LOCUS       DASQCV010000001         1626 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1658552, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000001 DASQCV010000000
VERSION     DASQCV010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1658552"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1375)
                     /gene="murF"
                     /locus_tag="VEQ16_00005"
     CDS             complement(<1..1375)
                     /gene="murF"
                     /locus_tag="VEQ16_00005"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HYP62233.1"
                     /translation="MRWTIAQVAGVLAARTGTGLDPLARLAGVSIDSRTLRPGELFVA
                     IHGPRHDGHDHVAGAFERGAVAALVAAEKMGRYPHPVLEKCVVVDDTFVALKQLARRV
                     REDWGGKIAGVTGSVGKTTTKEILAALLGARFRVLKSEGNFNNEYGLPLTLFRLEDTH
                     EAAVLEMGMSRRGELARLAEIARPDVGVVTRVSPAHLEFFSSLEEIALAKRELIEGLN
                     GKGSTAVLNADDPRVLAFGAHAPGRVLTYGIASPAFFSAENIEDRGALGTTFDYVSPE
                     GRVRLELALPGRHVIGNALASLAAASVWGIGIEEARTILPRLRPPAMRGELLRFSDGA
                     ALINDSYNSSPAALEAMTSLLAATPGFRRRILAAGEMRELGATSGELHRRAGVFAAAT
                     RAIDWVIGVAGDAGQLVEGARSAGIPPGQARFFVSSEEAAGFLAGLVESGDLLLVKGS
                     RSVKMERI"
BASE COUNT          278 a          592 c          472 g          284 t
ORIGIN      
        1 caatccgctc catctttacg ctgcgggatc ctttcaccag cagcaggtcg ccggactcga
       61 ctagtcccgc cagaaatccc gcggcttctt ccgaggaaac gaaaaatctc gcctgcccgg
      121 gcggaatccc ggcgctccgc gctccctcga ccagctgccc cgcgtcgccc gcaacgccga
      181 tcacccagtc gatcgctcgg gtcgcggcgg cgaatacccc tgctctgcgg tgcagttcgc
      241 cggaggtggc tccgagctcg cgcatttcgc cggcagcaag aatgcgccgg cggaatccgg
      301 gcgtcgccgc aagcagcgaa gtcatggcct ctaacgccgc cgggctggag ttgtagctgt
      361 cattgatcag cgccgctcca tcggaaaacc gcagcagctc gccgcgcatt gccggcggcc
      421 gcagcctggg caggatggtg cgcgcttctt cgatcccgat tccccacacg ctggccgccg
      481 ccagcgacgc caaggcattc ccgatcacgt gccggccggg cagggccaat tccaaccgta
      541 cccgcccttc cgggcttacg tagtcaaatg tggttccgag cgccccgcgg tcttcgatgt
      601 tttccgcgct gaaaaaagcg gggctggcaa ttccatacgt caggacgcgc ccgggcgcat
      661 gcgccccgaa cgccagcacc cgcggatcgt ccgcgttcag cacggccgtg gagccttttc
      721 cgttgagacc ctcgatcagc tcgcgtttgg cgagtgcgat ttcctccagc gaggaaaaga
      781 attcaaggtg cgccggcgaa acgcgcgtca ccacgcccac atcgggccgc gcgatctccg
      841 ccagccgcgc cagttccccg cgtcgcgaca tccccatctc cagaaccgcc gcttcgtgcg
      901 tatcctccag ccgaaacagc gtcaacggca gcccatactc gttgttgaaa tttccttccg
      961 atttcagtac gcggaaccgc gcgcccagca gtgccgccag gatctctttg gtcgtggttt
     1021 tcccgaccga accggtaacc ccggcgatct tgccgcccca gtcttcgcgc actcggcgcg
     1081 ccaactgctt gagggccacg aaggtgtcgt ccacgacaac gcatttctcg agaacggggt
     1141 gcggatagcg gcccattttt tccgcggcca ccagagctgc gacggcgcca cgctcaaacg
     1201 caccggcaac atgatcgtgt ccatcgtgac gcggtccgtg gatggccacg aacagttcgc
     1261 cgggacgtag cgtgcgagaa tcaatcgaga cgccggccag ccgggccagg ggatcgagtc
     1321 ccgttcccgt ccgcgccgcc agaacgccag ccacctgtgc aatcgtccac cgcataaata
     1381 cctcagcggg ttagccttat gagcgtaacc cagggttccc ttggtgctca ccggttcgca
     1441 gggttcctcc tcgtcggaag tctgcccgca gagcgggcag tgtgccgcct cgcttctggc
     1501 gcgttccagc gcgctcaaga ttcgcgccgg aaccctggcc gccggccctg gttacaggac
     1561 ctgcgcgcca ggtgccaaac cctgcgccgg attactctcg gttctcccca gcgtcttcaa
     1621 aaccgc
//
LOCUS       DASQCV010000002         3730 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_529, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000002 DASQCV010000000
VERSION     DASQCV010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3730
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..1042)
                     /gene="ispH"
                     /locus_tag="VEQ16_00010"
                     /gene_synonym="lytB"
     CDS             complement(116..1042)
                     /gene="ispH"
                     /locus_tag="VEQ16_00010"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017387043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HYP62234.1"
                     /translation="MRVILAQPRGFCAGVERAIDIVERALQKFGPPIYVRHEIVHNRH
                     VVEDLRARGAVFVDELDEVPEGAWTVFSAHGVARKVVQAAADRTLPVIDATCPLVAKV
                     HAEGRRYAGQGREIVLIGHAGHAEVEGTIGQIDGTVYLVQTVEDAEKLIVNKPDKLAY
                     ITQTTLSVDDTRGIIAALKARFPAITGPDVKDICYATQNRQEAVHQLAGLVDLILVVG
                     SKNSSNSNRLREIGAELGHPAYLIDDASALKAEWFEGISTVGLTAGASAPEVLVQGVI
                     EGLKQFGQVKVELLAGTPEDVKFKLPAEVAKI"
     gene            1405..3336
                     /gene="dxs"
                     /locus_tag="VEQ16_00015"
     CDS             1405..3336
                     /gene="dxs"
                     /locus_tag="VEQ16_00015"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HYP62235.1"
                     /translation="MPPRTPLLDRVNIPADLRNFSTEQLKQLADELRAETIDTVSTTG
                     GHLGSSLGVVELTVALHAVFETPRDRVIWDVGHQAYPHKILTGRRDRIRTLRQPGGLS
                     GFTRRSESEYDPFGAAHSSTSISAGLGMAVARDIKHEEDPRHVIAVIGDGSMSAGMAY
                     EAMNNAGAIRSRMIVILNDNDMSIAPPVGAMSAYLSKLISSRSFMSLRDFAAKMAKHF
                     PRPLERTARRAEEYARGILTGGTLFEELGFYYVGPIDGHNLDHLLPVLRNLRDTDTAE
                     PVLLHIVTQKGKGYAPAEAAADKYHGVQKFNVITGEQKKAPPGPPNYTSVFAKALITE
                     AEADPAIVAVTAAMSPGTGLDKFEAKFPNRMFDVGIAEQHAVTFAAGMATEGLKPFCA
                     IYSTFLQRGYDQLVHDVVLQNLPVRFAMDRAGLVGADGATHAGSFDLCYLGPMPNMVI
                     MAPSDEAELMHAVATAAAIDDRPSAFRYPRGEGVGIELPARGQIMEIGKGRILQEGNK
                     IAILALGPRLADAQKAAAELAAHGFPCTIADARFMKPLDTALIDQLARHHEVLITIEE
                     GAAGGFGAAVAHHLAWTGAFDKGLKFRPMTLPDRLIDHNTPAAQLIEAGLTASHIVTN
                     AIAALGLDSQHGMVAIPAQ"
     gene            3359..>3730
                     /locus_tag="VEQ16_00020"
     CDS             3359..>3730
                     /locus_tag="VEQ16_00020"
                     /inference="COORDINATES: protein motif:HMM:NF017319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP62236.1"
                     /translation="MKRRILIALLAVALGGATAARADTPEAAPVTALNSGLLAVMKAG
                     SGGANFATREASLTPVVQQSYDLQTVTQNSVGFLWSTLPAAQQQKLVELIGQFTTASY
                     ASQFNSYGGESFSVLPTEKPLG"
BASE COUNT          672 a         1203 c         1159 g          696 t
ORIGIN      
        1 ggctccagca tcagcaccag cggatagcgc ttattgcctt tcagcttctg ctgcagaatg
       61 taggtactga ccttgagggc ctggttaaac ggtacaccca tacgcgctgc gttccttata
      121 tcttggccac ttcggccggc agcttgaact taacatcttc cggcgtaccc gccaaaagct
      181 cgactttcac ctggccgaat tgcttcagcc cttcaatgac gccctggacc agcacttcgg
      241 gggccgaggc gccggcggtg aggccaacgg tggagatgcc ttcgaaccat tcggctttca
      301 atgcggaggc atcgtcgatc aggtatgcgg gatggcccag ctccgcgccg atctcgcgca
      361 ggcggttgga attggaggaa ttcttgctcc ccaccacgag gataaggtcc accagcccgg
      421 cgagctggtg caccgcttcc tgacgattct gggtggcgta gcagatatcc ttcacatccg
      481 gcccggtgat ggcggggaag cgggccttca gcgccgcgat gatgccgcgc gtatcgtcaa
      541 cagagagggt ggtctgggtg atgtaggcga gcttgtccgg cttgttcacg atcagcttct
      601 cagcatcttc gaccgtctgc accagataaa cggtgccgtc gatctggccg atcgtgccct
      661 cgacctcggc atggccggca tggccgatga gcacgatctc gcggccctgg ccggcatagc
      721 ggcggccttc agcatggact ttcgcgacca gcgggcaggt ggcatcgatg accgggagcg
      781 tgcggtccgc cgccgcctgg accaccttgc gggcgacgcc atgggcggaa aacacggtcc
      841 aggcgccttc cggcacctcg tccagctcat ccacgaacac cgccccgcgg gcgcgcaaat
      901 cctccaccac atggcggtta tggacgattt cgtgacgcac atagatgggc gggccgaatt
      961 tctgtaaggc gcgttccacg atatcaatgg cccgctcgac gcccgcgcag aagccgcgcg
     1021 gctgcgcgag gatgacccgc atggttttag cccccgctac gccattcgtc ataccatcca
     1081 tatagcccat cctgttgccg ctgtgtcacg ctgccgcgct ttctcggccc agcattaagt
     1141 cattgcctcc acaatccgca agctagtggt tacaattaac cttcacctgt gaccttttcg
     1201 cagagcgggg gtagcgcccg gtggctggct tttcggagcg ccgtcccgta tgggaaggga
     1261 ttcgtaagga tacatgccgg ccgactcggc ccggtaatgt aaagagaaga atgggttagg
     1321 ccgggttggg tgtgtgctta gtgttggtaa aggacgggat ttgatgcaaa tgagactgcc
     1381 gccgcgtgct gggggatgtc actaatgcca ccgcggaccc cgctcctgga ccgggttaat
     1441 attccagccg atctgcggaa cttctccacc gagcagctga aacagctggc tgatgagctc
     1501 cgtgccgaga cgatcgacac ggtatccacc accggcggtc atctcggctc ctcactcgga
     1561 gtcgtggaac tgaccgtcgc cctgcatgcc gtgttcgaga cgccgcgcga ccgcgtgatc
     1621 tgggatgtcg gccaccaggc ctatccgcat aagatactca ccggccgccg cgaccgcatc
     1681 cgcacgctgc gccagccggg cgggctgtcc ggcttcactc gccgctcgga gagcgaatac
     1741 gacccgttcg gcgcggctca ttccagcacc tccatctcgg ccgggctcgg catggccgtg
     1801 gcgcgcgaca tcaagcatga ggaagacccg cgccatgtca tcgccgtgat cggcgacggc
     1861 tccatgtccg ccggcatggc ctatgaggcg atgaacaatg ccggcgccat ccgctcgcgc
     1921 atgatcgtga ttctcaacga taacgatatg tcgatcgccc cgcccgtggg ggcgatgagc
     1981 gcgtacctgt ccaagctcat ttcttcccgc agtttcatga gcttgcgcga tttcgcggcc
     2041 aagatggcca agcacttccc ccgcccgctg gagcgcacgg cgcgccgtgc ggaagaatat
     2101 gcgcgcggca tcctcaccgg cggcacgctg ttcgaggagt tgggctttta ttatgtcggg
     2161 cccatcgacg ggcataatct cgaccatctg ctgcccgtgc tgcgcaatct gcgcgacacg
     2221 gatacggccg agccggtgtt gctgcatatc gtcacgcaaa agggcaaggg ctatgccccg
     2281 gctgaggcgg cggcggacaa gtaccatggc gtgcagaaat tcaacgtcat caccggcgag
     2341 cagaaaaagg ccccgcccgg cccgccaaat tataccagtg tcttcgccaa ggcgctgatc
     2401 accgaggccg aggccgaccc ggccatcgtc gccgtcaccg ccgccatgtc gcccggaacg
     2461 ggactcgaca agttcgaagc caaattcccc aatcgcatgt tcgatgtcgg cattgccgaa
     2521 cagcatgccg tgaccttcgc ggcgggcatg gcgaccgagg ggctgaaacc gttctgcgcc
     2581 atttattcca ccttcctgca gcgcggctat gaccagctgg tgcatgacgt ggtgctgcag
     2641 aacctgcccg tgcgcttcgc catggaccgc gccggtctgg tgggggcgga tggcgctact
     2701 catgccggtt cgttcgacct ttgttatctc gggccgatgc cgaacatggt catcatggcg
     2761 ccttccgacg aggctgagct gatgcatgcg gtggccaccg cggcagccat cgacgaccgg
     2821 ccctccgcct tccgctatcc gcgcggcgag ggcgtgggca tcgagctgcc cgctcgtggc
     2881 cagattatgg agatcggcaa ggggcgcatt ctgcaggaag gcaacaagat cgccatcctg
     2941 gcgctcgggc cccgtttggc tgatgcgcag aaggccgccg cggaacttgc cgcccatggc
     3001 ttcccctgca ccatcgccga tgcgcgcttc atgaagccgc tggatacggc actcatcgac
     3061 cagctggcgc gccaccacga ggtgctcatc accatcgagg aaggggccgc cggcgggttc
     3121 ggcgcggccg tggcgcatca tctggcctgg accggtgcct tcgataaggg gctgaaattc
     3181 cgcccgatga ccctgcctga ccggctgatc gaccataaca cgccggccgc gcagcttatt
     3241 gaagccggac tgacggcgag ccatatagtc accaatgcga tcgcggccct ggggctcgat
     3301 tcgcaacacg gtatggtcgc cataccggcg caatgaaaga aaggatagag cagggcgcat
     3361 gaaacgcagg attctcatcg ccctgttggc agtggcgctg ggcggcgcca ccgccgcccg
     3421 ggccgacacg ccggaggcgg cacccgtgac cgcgctcaat tccgggctgc tcgccgtaat
     3481 gaaagccggg tcgggcgggg ccaatttcgc tacgcgcgag gcttcgctga ccccggtggt
     3541 gcagcagagc tatgatctgc agaccgtgac gcagaattcc gttggctttc tctggtctac
     3601 cttgccggcg gcgcagcagc agaagctggt cgagctgatc ggacagttca cgacagcctc
     3661 ctatgccagc cagttcaata gctatggcgg cgagagcttc tcagtgctgc ccacggagaa
     3721 gccgcttggg
//
LOCUS       DASQCV010000003         2542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2985689, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000003 DASQCV010000000
VERSION     DASQCV010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2985689"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1185)
                     /locus_tag="VEQ16_00025"
     CDS             complement(<1..1185)
                     /locus_tag="VEQ16_00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007002470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HYP62237.1"
                     /translation="MTVAEPRTRRRQHVPEPPAVAHDPVCGMTVDPAKAKHHAEHAGH
                     SYVFCSARCREKFSADPARYVVSSPQGRAPAAAGEVLWTCPMHPQIVRKEPGNCPICG
                     MALEPMTPAAGDAENPELRAMTRRFWVGVVLSLPLLAIAMAEHFNKAALDTLIAPRLL
                     VWVQLILGTPAVLWGGWPFFARGWASIFSRRLNMFTLIALGTGVAYVYSLAAALAPGI
                     FPASFRDVDGQVPLYFEAAAVIVTLVLLGQVLELRARSQTSSAIRALLDLAPKRARRL
                     REDGSDEDIPLEEVVPGDRLRVRPGEKVPVDGAVLEGRSAVDEAMITGEPVPAEKNPG
                     DKVTGATVNTTGSFVMRAERVGSDTLLAQIVAMVAEAQRSRAPIQKLVDTISAWFVPA
                     VVV"
     gene            1364..1900
                     /locus_tag="VEQ16_00030"
     CDS             1364..1900
                     /locus_tag="VEQ16_00030"
                     /inference="COORDINATES: protein motif:HMM:NF019430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HYP62238.1"
                     /translation="MRHRKIWGSLVLMLALIAGPALAQQPQHDEHHPLGAANPEMPGG
                     MAGAGDIPMMGMMRMMMGRDGMSMMGAMARHVEGRLAFLKTELKITDAQLPLWNAVAD
                     AMRANAKTMGDIAGGMMGSSQTATLPDKLALREKMMTAHLEALRKFKAAVDPLYAALG
                     DEQKKTADELLIGPMGMM"
     gene            1921..2244
                     /locus_tag="VEQ16_00035"
     CDS             1921..2244
                     /locus_tag="VEQ16_00035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5676 family membrane protein"
                     /protein_id="HYP62239.1"
                     /translation="MSQMQSMAGPRPGAQSDVSRVGAIPIVTLGLSLSLFFVISYVIC
                     IAGYLWVPGFPVQHAALSIFLPGFELLSWRSFCLGMAEGFIWGWYIALVFGSLYNFFS
                     RRIER"
     gene            2260..2504
                     /locus_tag="VEQ16_00040"
                     /pseudo
     CDS             2260..2504
                     /locus_tag="VEQ16_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019460569.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2933 domain-containing protein"
BASE COUNT          468 a          779 c          844 g          451 t
ORIGIN      
        1 gacgacgacg gcaggcacaa accaggccga gatcgtgtcg accagtttct ggatcggagc
       61 ccgggagcgc tgcgcttccg ccaccatcgc tacgatctgg gccaagaggg tatcgctgcc
      121 gacgcgttcc gcacgcatca caaaactgcc cgtcgtattg accgtggcgc cggtcacctt
      181 gtcgccggga ttcttctcgg ccggcaccgg ctcgccggtg atcatggctt catcgactgc
      241 gctgcgccct tcgagcaccg cgccgtcgac cggcactttc tcgcccggcc gcacgcgcag
      301 gcggtcgccg ggaaccacct cttcgagcgg aatgtcctcg tcgctgccat cctcgcgcag
      361 ccggcgggcg cgtttcggcg ccaggtcaag gagggcgcgg atggcgctgc tggtctggga
      421 gcgggcgcgg agctcgagga cctggccgag cagcaccagc gtgacgatga cggccgctgc
      481 ctcaaaataa agcggcacct gcccgtcaac atcgcggaag gaggcgggaa agatccccgg
      541 cgccagcgcg gcggccaggc tgtagacata ggcgacgccg gtgccgagcg cgatcagcgt
      601 gaacatattg agccggcggc tgaagatcga ggcccagccg cgcgcgaaga acggccagcc
      661 gccccagaga acggccggcg tgcctaagat cagctgaacc cagacgagca ggcggggggc
      721 gatcaaggta tcaagcgccg ccttgttaaa atgttcggcc atggcaatgg ccagcaatgg
      781 cagcgacagc acgaccccga cccagaagcg ccgtgtcatg gcgcgcaatt cgggattctc
      841 ggcatcgccg gccgccggcg tcatcggctc cagcgccatg ccgcagatcg ggcagttacc
      901 gggctccttg cgcacgatct gcggatgcat cgggcaggtc cataagacct cgccggcggc
      961 ggcaggagcg cggccctgtg gggaagagac gacgtagcgc gccggatcgg cgctaaattt
     1021 ttcccggcaa cgcgcgctgc agaagacgta gctgtggccg gcatgttcgg cgtggtgctt
     1081 cgccttggcc ggatcgacgg tcatcccgca cacgggatcg tgcgcgactg ccggcggctc
     1141 cggaacatgc tggcgacgac gggttcgtgg ttcggctacg gtcatcaaag atagtcctta
     1201 cgcggaggcc tcctgcgctg gaaggtttac tttgccaaac cttcccgcgc tagaaggttg
     1261 ctatgcctct atttacatgc ggcaaatcga ccaccaattt gatctggatc aattccgccg
     1321 gttaacacac ctgatacagg tagtgaggtc tgagaggatt gacatgcgtc accgcaaaat
     1381 ttggggctcg ctggtgctga tgctggctct gattgccggc ccggcgctcg cacaacagcc
     1441 gcagcacgac gaacatcatc ccctgggcgc ggcgaacccg gagatgcccg gcggaatggc
     1501 cggcgccggc gacataccga tgatgggcat gatgcgaatg atgatgggcc gcgacggcat
     1561 gtcgatgatg ggtgccatgg cccgccatgt cgaaggccgg ctggcttttc tcaaaaccga
     1621 gctgaagatc accgacgccc agctcccgct atggaacgcg gtagccgacg cgatgcgtgc
     1681 gaacgccaaa accatgggcg acatcgcggg cggcatgatg ggtagctcac agacggccac
     1741 gctgccggac aaactggcgc tgcgggaaaa aatgatgacc gcgcatctcg aggcgctgcg
     1801 caaattcaag gcggcggtcg acccgctcta cgcggcgctc ggcgacgaac agaagaaaac
     1861 cgctgacgag ctgctgatcg gtccgatggg gatgatgtag cgaaagcgga aggtgtcacg
     1921 atgagccaga tgcaaagcat ggccgggccg cggcccggag cgcaatccga tgtcagccgc
     1981 gtgggcgcga tcccgattgt gactctcgga ctgagcctca gtctgttttt cgtgatctcc
     2041 tacgtgattt gcattgcggg gtatctgtgg gtcccgggtt tccccgtgca gcatgcggcg
     2101 ctgtcgatct tcttgccagg tttcgaactg ctgagctggc gcagcttttg tctgggaatg
     2161 gcggagggct tcatctgggg ctggtacatc gcgctcgtgt tcgggtctct ttacaatttt
     2221 ttcagccgcc gcattgagcg ctgaggaagg gctgcgccaa tgaaccatga acatcaggaa
     2281 ccgtcctggt ggcggagccc gatcggtatc gtcacctgcg ggttccttat tgtggcgggg
     2341 ttcttttact gacggagcat accgcgcatg tctttggcat gctgccctgg ctcctgatcc
     2401 tcgcctgtcc gctgatgcac atcttcatgc atcacggccg tcacggcggc cacggtcagg
     2461 cgccggggcc gaagccggat gaggaagcgg agggaaggcc atgacgcatg acactgtgcc
     2521 cgcctatggc ctctgggggc tg
//
LOCUS       DASQCV010000004         1567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2986088, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000004 DASQCV010000000
VERSION     DASQCV010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2986088"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            582..>1567
                     /locus_tag="VEQ16_00045"
     CDS             582..>1567
                     /locus_tag="VEQ16_00045"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYP62240.1"
                     /translation="MVLMAYVTGHLTNLAFGLVSLDMLDRLRIPLMAPWQSIPGQILL
                     YGALTSHLGLGLFAVAGRRSFASLNRSDAAQLALGLLIPVFLAWHVLRTRGAIGLGGE
                     HATYAVLMINYWKVTPFFGLLQVLGLVAAWVHGCLGLYGWLRLRQWWPVVAPFLYPVA
                     FALPILALLGFVEAGKQALARFAGSDNWPLQVRIALEKFAVLAPKLQVWRDYFLLGYA
                     TAAFAACLLFATQAIRHRRRTARVIHAGGHQIAASRGLSLLEIDRQQGMPHTSLCSGR
                     GRCGTCRVRVLDGMKNLSPPGAAETETLSRLHLCESDVRLACQAILLGPLVS"
BASE COUNT          249 a          472 c          512 g          334 t
ORIGIN      
        1 ttaccaacgc acttttgatg gccgcaaagc caactatgcc gtttttttcg agagaaatca
       61 gggccggcag caacaggctc agcctaggcg gcaggaagaa acgtgcgcgc tgggtcgggc
      121 aaatgtgcag tcgcggcaaa cgcggcaatt gatgtgggtt gatcggcgcc acaacgcgcc
      181 ttggggccaa cagtctctaa gccatgcaat tcatgagcgg cacctggtgc cggcagcgca
      241 cgaatttggg gtgctgctgc aggtcacccc gcaaccgacg gattggcggg ttatcgggaa
      301 tattcccagc agcgccgagg tctggggttt cgcacgggca ggccggcggg aggaggcgct
      361 tgccgcgaac atgctcagct cgcgaacgat gcttgggtcg gtatatgcgc ttacggaaac
      421 agtcgcggcc gcgagggttg ccagtcgaaa ccactccggt tgcgggctta ggcaccgcaa
      481 atgccacctg cagctaactt gatcggccga caacgggagc ttggatgaga agccgcagat
      541 cggccgccgc aatcgtccgc tcagtgcgcc tcactggcgg catggtgctg atggcatacg
      601 tgactggcca tctgacaaat ttggcgttcg gcctagtctc gctcgatatg ctcgaccgcc
      661 tgcgcattcc gctgatggcg ccctggcaga gcattcccgg ccagatcctg ctctacggcg
      721 ctttgacctc gcatctcggc ctgggtctgt tcgccgtagc gggccggcgt tcgttcgcct
      781 ccttgaatcg atcggacgcg gcgcagctgg cgctggggct gttgataccc gtctttcttg
      841 cttggcacgt gctgcgcacg cgcggcgcga tcggtctcgg tggtgagcac gcgacctacg
      901 cggtgctgat gatcaactat tggaaggtga cgccgttctt tggtctgttg caggtgttgg
      961 gcctggtcgc cgcctgggtg catggatgtc tgggtttata cggttggctg cggttgcggc
     1021 agtggtggcc ggtcgttgcg cccttcctct atccggtcgc cttcgcgctg ccgatcctgg
     1081 ctttgctcgg atttgtcgaa gccggaaagc aggcgcttgc gaggttcgct ggcagcgata
     1141 actggccgct tcaggtgcgc atcgccctcg agaaattcgc ggtcttggcg ccgaagttgc
     1201 aggtctggcg cgattacttt ctgctgggct atgcaactgc cgcctttgcc gcctgtctgc
     1261 tttttgccac gcaggcaatc cggcaccgcc gccgcaccgc gcgcgtaatc cacgccggtg
     1321 gtcaccagat tgctgccagc cgcgggttgt cgctcctcga aattgaccgt caacagggca
     1381 tgcctcatac cagcctctgc tccgggcgtg gccgttgcgg aacctgcagg gtgcgtgtcc
     1441 tcgacggcat gaaaaatctg tcgccgcccg gtgcggcgga gacggaaacg ctcagccggt
     1501 tgcacctttg cgaatccgat gtccggctgg cctgccaagc gatcttgctc gggccgctgg
     1561 tcagcat
//
LOCUS       DASQCV010000005         1588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_499209, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000005 DASQCV010000000
VERSION     DASQCV010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499209"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..1062)
                     /locus_tag="VEQ16_00050"
     CDS             complement(178..1062)
                     /locus_tag="VEQ16_00050"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYP62241.1"
                     /translation="MKLDLHRLRHVVTVAETRSFSQAADMLAITQPALSRSIATLETD
                     LGLRIFDRSRAGVFVTRAGEELIAGAVRLLAQAEALEQEVLQARNVEVGEVKFGMAPL
                     VASIYLPRLLAQLAKAQPTLLLRPLVRKGDELLELLAGGEIDSCYIASPYQPRHDQIL
                     FSSIGTVPIGIFARAGHPLAHGQALPPDVLREFSFAASEPQFPGRGGRPSFITSIVCD
                     NYFMMKELMLASDTVCLMSPLLLREELRSGKVVQLDVALIDLIAFDLCAVRLTNRSVS
                     PNTALLQDVFLEILSKSG"
     gene            1181..>1588
                     /locus_tag="VEQ16_00055"
     CDS             1181..>1588
                     /locus_tag="VEQ16_00055"
                     /inference="COORDINATES: protein motif:HMM:NF024744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004721 - phosphoprotein phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HYP62242.1"
                     /translation="MKKITFFAAPVMLAAAAPALAQEVINTPILSSISNFRDIAGVPT
                     SEGGSGLSYTTSKGGVMRTGVFYRSNALSSVSRTDEATLNTLGITEVIDLRTPGELAS
                     SPEVQNVPAGATYINVSVFGNSIPPPNLSSVAAA"
BASE COUNT          345 a          473 c          485 g          285 t
ORIGIN      
        1 aaattcgagg gcgacgaagc ctcgtgggat ttgccagtga aaaagcccgt ctctgtcaca
       61 ttgggtttcc gcgcgatcct ggatggggat gagatgtccg gcacagcgaa gattggaatg
      121 ttcggctccg cgaaattcac cggcgcgcgg acgccataac cgccgccgca ccgcccctca
      181 cccggatttg gacaggatct ccaaaaagac atcctgcagc agcgcggtat ttggcgatac
      241 gctgcgattg gtcaggcgga cagcgcaaag atcgaaggca atgagatcaa tcagcgccac
      301 gtcgagctgg acgaccttgc cgctgcgcaa ttcttcccgc aacagcaacg gggacatcag
      361 gcagaccgtg tcactcgcca gcatcagctc cttcatcatg aaataattat cgcagacaat
      421 gctggtgatg aacgacggcc gaccgccgcg gccgggaaat tgaggctcgc tggcggcgaa
      481 ggaaaattcc cgcagcacat cgggtggcag cgcctggcca tgggccaagg ggtggccggc
      541 gcgggcaaaa atgcctatgg gcacggtgcc aatagagctg aacagaatct ggtcatgacg
      601 cggctgatag gggctggcga tgtagcagct atcgatctca ccgccggcca gaagctcaag
      661 cagctcatcc cccttgcgta ccaatggccg cagaaggagg gtgggctggg ctttggctag
      721 ctgggctagc aggcgtggca gatagatgct ggcgaccaac ggcgccatgc cgaatttcac
      781 ctcacctacc tcgacattgc gggcctgcag cacctcctgc tccagcgcct cggcctgggc
      841 caatagccgc acggcaccgg cgatcagttc ctcccccgcc ctggtgacga atacgccagc
      901 gcggctgcgg tcgaaaatgc gcagcccaag atcggtctcc agcgtggcga tactgcggct
      961 cagggccggc tgcgtgatgg cgagcatgtc agctgcctgg ctgaaactgc gggtctcggc
     1021 gacggtcacc acatgacgca gcctgtggag gtcaagtttc atgcggtaca tttattgaaa
     1081 ctgtcatcaa aatgcattag actcatacaa aaattttggt cagaagccaa ctgccgggtt
     1141 ccgggagaag gccggttaaa cgacacagga aggtgaagca atgaaaaaga taacgttttt
     1201 tgccgcgccg gtgatgctgg cggcggccgc gcctgctttg gcgcaagaag tgatcaatac
     1261 gcctattctg agctcgatca gcaatttccg tgacattgcc ggggtgccga cgtccgaggg
     1321 cggcagcggc ctgtcctata ccaccagcaa gggcggtgtg atgcgcaccg gcgtgttcta
     1381 ccgctcaaac gccctgtcca gcgtgagccg gaccgacgaa gcgacgctca acacgctcgg
     1441 tattaccgaa gtcatcgatc tgcgcacacc gggcgagctg gcttcctcgc cagaggtaca
     1501 gaatgtgccg gccggtgcga cctatatcaa tgtcagcgtg ttcggcaatt ccatcccgcc
     1561 ccccaacctg tccagcgtgg cggccgcg
//
LOCUS       DASQCV010000006         2807 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2323524, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000006 DASQCV010000000
VERSION     DASQCV010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2807
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2323524"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..2005)
                     /locus_tag="VEQ16_00060"
     CDS             complement(155..2005)
                     /locus_tag="VEQ16_00060"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HYP62243.1"
                     /translation="MNMERNLTTAAALRDALRDGLLKGALLDGADLAGFDFAGARFSD
                     CVFKSCAISEAQLAGAAFLRCRFEGTGLEKANARKASFTECEFIEADLRAADLHGASF
                     TTCVVNGGTAQGADFEHAAISTSLWTGIKLGETKFAAAVCAQSVFTRCDFTGADLVKA
                     MFAMCGFKESVLPRTLSGGNFDACDFIGLDLTRRQAVGTRLTNSVLSGANLFGIDARG
                     ADLSRSILTGATLVRANLSGARLDAANLEKAKLVRANLEKTSLTKIKAAGADFTGARL
                     AGADFSDAALAGAKLLEATAPQAQEDDDSTIAMAPGRVSYNGTSFSGADFSGRIFRGH
                     DLSGTKFAGCDLSFAVFDGEALSYTQFFDCNLTGASFAGSRLERAVFQNCVLKDARFA
                     QAVLKHCDLASTQLGACDFIGAQLYRVDFQPADFRKVQFAGAQFSFCFLAGAVLAGCV
                     IEDADFPDCHFAGANFSQAKLRNCVLRGANFGGADFTGAEILRSPLTHANFSQAVLKD
                     ANLAELEARGAFFSKIDAPGLRLTSVNMPHAVFTAAQWSKGRCSNSDLRRSDFSHAML
                     ADTLFTQVNLSGANVHGAQGSMAEWVSVNRTGVKYTDEQQLAAESWLPPP"
     gene            complement(2002..>2807)
                     /locus_tag="VEQ16_00065"
     CDS             complement(2002..>2807)
                     /locus_tag="VEQ16_00065"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HYP62244.1"
                     /translation="SGANFTGANLSRCWLQQAHLERADFTDAIAEEAQFGGAHLAGAR
                     FTGANLKGARFGEAGLAGADFSKQTLPGASFDRAHGARANFSEANLAGASFRGATLPR
                     ADFSKANVTNAAFDNAVLTQANFTETLAERASFTRADMVNLRAHQTNAQGAVFTDVRA
                     ERSVWQRALLGKADFSRAALNQANFAEAVLEHAQFDRALLEAAQFGSADLRFAVVTNA
                     KLVRAILERADLRDADFSGSNLYKAGLFAAASSRIKLEGAFLAGTLMAS"
BASE COUNT          544 a          878 c          906 g          479 t
ORIGIN      
        1 ccgggcacgg ccagcgcggc gaaaaagcgg cgtccctcgg cctcaatctc gacctcgcgg
       61 ccgcacacac ccgtgaccaa agccgggccc atgcgctgca gcgtggaaaa ttccgagagg
      121 agattgaaac tcgtatccgg cattgcggtt ccccttatgg cggcggcagc cagctctcgg
      181 cggccagttg ttgttcatcg gtatatttca cgcccgtgcg gttcacggac acccattccg
      241 ccatgctgcc ctgggcgcca tgcacattgg cgccactgag attgacctgg gtgaacaagg
      301 tatccgccag catggcatga gaaaaatcgc tccggcgcaa atcggaattg ctgcagcgcc
      361 ctttgctcca ttgcgctgcg gtaaagacgg cgtgtggcat gttcaccgag gttaggcgca
      421 ggcccggcgc gtcgatcttg ctgaaaaagg cgccgcgcgc ttccagctcg gcgaggttcg
      481 cgtccttcag cacggcctgg gagaagttcg cgtgggtgag cggggagcgc agaatttccg
      541 cgccggtgaa atcggcgccg ccgaaattgg cgccgcgcag cacgcaattg cgcagcttcg
      601 cctgggagaa atttgctccg gcgaaatggc aatcggggaa atcggcatcc tcgatgacgc
      661 agccggccag cacggcgcca gccaggaagc agaagctgaa ctgcgcgcca gcgaactgca
      721 ccttgcggaa atccgcgggc tggaaatcca cccggtagag ctgcgcgccg atgaaatcgc
      781 acgcgccgag ctgggttgag gccagatcgc aatgtttgag caccgcctgg gcgaagcgcg
      841 cgtccttcag cacgcaattc tggaacacgg cccgctccag ccgggagccc gcgaaactgg
      901 cgccggtgag gttgcagtcg aagaactgcg tataggaaag cgcctcgcca tcgaacacgg
      961 cgaagctgag atcgcatccg gcgaatttcg tgccggacag atcatggccc ctgaagatgc
     1021 ggcctgagaa atcggccccg gaaaatgacg tgccgttata gctcacgcgg ccgggcgcca
     1081 tggcgatggt ggaatcgtca tcctcctgcg cctgcggggc cgtggcttcg agcaattttg
     1141 ccccggccaa agccgcgtcc gagaaatccg ccccggcgag acgtgcgcct gtgaaatcgg
     1201 ccccggccgc cttgatcttg gtgagcgagg ttttttccag attggcgcgg acgagcttgg
     1261 ctttttccag attggccgcg tcgagcctgg cgccggatag attggcccgg accaaggttg
     1321 cgcccgtgag gatggagcgc gataaatccg cgcccctggc gtcgatgcca aacagattgg
     1381 caccggaaag gacggaattg gtcaggcgcg tgcccacggc ttggcggcgc gtgagatcga
     1441 gcccgataaa atcgcaggca tcgaaattgc cgcccgaaag cgtgcgcggc aacacgctct
     1501 ccttgaagcc gcacatggcg aacatggctt tcaccaggtc tgcgccggtg aaatcgcatc
     1561 tggtgaaaac gctctgcgcg cagaccgcgg cggcgaattt cgtctcaccc aatttgatgc
     1621 cggtccagag gctggtggag atcgcggcat gctcgaaatc cgcgccttgc gccgtgccgc
     1681 cattgaccac gcaggtcgtg aaggaggcgc catgcagatc cgccgcccgc agatccgcct
     1741 cgatgaattc gcattcggtg aagctggcct tgcgcgcatt ggccttctcc agccctgtgc
     1801 cttcgaaacg gcagcgcagg aaggcggcgc cggcaagctg ggcctccgaa atggcgcagg
     1861 atttgaacac gcaatcgctg aacctcgcgc cggcgaaatc gaaaccggca aggtcggctc
     1921 catccagcag cgcgcctttc aggaggccat cccgcagggc gtcccgcagc gcggcggccg
     1981 ttgtgaggtt gcgctccata ttcatgatgc catcagcgtg cccgcaagaa acgccccttc
     2041 cagcttgatg cgtgacgaag ccgccgcgaa cagacccgcc ttgtagagat tggagccgga
     2101 gaagtcggca tcccgcaaat ccgcgcgttc caggatggcg cgcacgagct tggcgttggt
     2161 gaccaccgcg aaacggagat cggccgagcc gaattgcgcg gcctccagca aagcacggtc
     2221 gaattgcgca tgttccagca cggcctcggc gaaattcgcc tggttcaaag cggcgcgcga
     2281 gaaatcagcc ttgccgagta gagcgcgttg ccacactgaa cgttcggccc tgacatcggt
     2341 gaataccgcg ccttgcgcat tggtctgatg cgcgcggaga ttgaccatgt cggcacgggt
     2401 gaaggaggcg cgctcggcca gggtctcggt gaaattcgcc tgggtcagga cggcattgtc
     2461 aaacgccgcg tttgttacgt ttgccttgga aaaatcggcc ctcggcaatg tggcgccacg
     2521 gaaagaggcg ccggccagat tggcctcgct gaaattcgcg cgcgcgccgt gcgcccggtc
     2581 gaacgaggcg ccgggcagcg tctgcttgga gaaatctgcg cccgccagcc cggcctcgcc
     2641 gaagcgtgcg cccttgagat tggccccggt gaagcgtgcg ccggcaagat gcgcgccgcc
     2701 aaattgcgcc tcctccgcta tcgcatcggt aaaatcggct cgttcgagat gagcctgctg
     2761 cagccagcaa cgtgacagat tcgcgccggt gaaatttgcc ccgctga
//
LOCUS       DASQCV010000007         1533 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1660261, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000007 DASQCV010000000
VERSION     DASQCV010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1660261"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..539
                     /locus_tag="VEQ16_00070"
     CDS             <1..539
                     /locus_tag="VEQ16_00070"
                     /inference="COORDINATES: protein motif:HMM:NF020254.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MEKHLA domain-containing protein"
                     /protein_id="HYP62245.1"
                     /translation="AEDEGGIYRWCGVMKGAAMGVPEKIDLRLDENFAALLAGSFLRL
                     VGRHLGEGEGEGEGEGAAWLYAEAPFCLLAHDGADDPCFIYANAAAQNCFGYSWDEFV
                     GLPSRLSAEAPERGERERLLEAVRGQGFIADYRGVRVTKTGRRFLIEQAVVWELLDEA
                     GKRHGQAAMFWPPAAQNP"
     gene            602..>1533
                     /locus_tag="VEQ16_00075"
     CDS             602..>1533
                     /locus_tag="VEQ16_00075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62246.1"
                     /translation="MASMSGWRAAALFMGVLAAWFCPGRFAQAQTDVIAASVGDDDTP
                     FILDSTGKVWGFSTPDHLDGWVQIAGLPPVRQLVPFAALTQDGRVFTWGLTQPASSRA
                     QAVSYTAPLQVAGLSDVAAIFGGDSDGTDGHFLALLRDGRVAMFGRSLAGSQGVAGDP
                     AVEIVPAIANAVSAAVSDASETVLTSDGYAYSWGQLRLDGGTQFHAPASPVKIFVGAD
                     KQFVYGNADYVAALSGDGTLHHWGMCVSGAANSGMALAGVTDNVLGVRKYVKTARNEA
                     PDVYLLYDGRVAVAYPPGRSWAGGACTAGIAATM"
BASE COUNT          233 a          380 c          611 g          309 t
ORIGIN      
        1 tggcggagga cgagggcggg atttatcggt ggtgtggggt aatgaaaggg gcggcgatgg
       61 gcgtgccgga aaagattgat ctccgcctgg acgagaattt tgccgcgctg ctggcaggga
      121 gttttctgcg gctggtgggg cggcatcttg gcgagggcga gggtgagggc gagggcgaag
      181 gcgcggcatg gctgtacgcg gaggcgccct tctgcctgct ggcgcatgac ggggcggatg
      241 atccttgctt catctatgcc aacgcggcgg cgcaaaattg ttttggttat tcctgggacg
      301 agtttgtagg cctgccctcg cggctgtcgg cggaggcgcc ggagcgcggg gagcgggagc
      361 ggctgctgga ggcggtgcgg ggccaggggt tcatcgcgga ttatcgcggc gtgcgggtga
      421 cgaagacggg gcggcggttt ttgattgagc aggcggtggt gtgggagctg ctcgacgagg
      481 cgggcaagag gcatgggcag gcggctatgt tctggccgcc ggccgcacag aatccttgac
      541 gccgccgcaa cggacagcga tgctggaaaa gtctgggagt gtaacaaagg acaagagtaa
      601 aatggcaagc atgtctggct ggcgcgctgc tgcgctcttc atgggggttc tggccgcatg
      661 gttctgcccg gggcggttcg cgcaggcaca gaccgatgtc atcgccgcgt ctgtcggtga
      721 tgacgacacg cctttcattc tggacagcac cggcaaggtg tggggctttt ccacaccgga
      781 ccatctggat ggctgggtgc agatagcggg gctgccgcct gtgcggcagc tcgttccgtt
      841 tgcggcattg acgcaggacg ggcgcgtttt cacctggggg ttgacgcaac cggcctcttc
      901 ccgcgcgcag gcggtgagct atacggcgcc gttgcaggtt gcggggctga gcgatgtcgc
      961 ggcgatcttt ggcggggatt ccgatggcac cgacgggcat tttctcgcgc tgttgcggga
     1021 tgggcgggtg gccatgttcg ggcggagcct cgccggatct cagggggttg ccggcgatcc
     1081 ggctgtggag atcgttccgg ctatagcgaa tgctgtttcc gctgccgtca gcgatgcgtc
     1141 cgagacggtt ttgaccagcg atggctatgc ctatagctgg ggccagctga ggctggatgg
     1201 cgggacgcaa tttcatgcgc cggcgagccc ggtgaaaatt tttgtcggcg cggacaagca
     1261 atttgtctat ggcaatgcgg attatgtcgc cgctttgtcg ggcgacggga cgctgcatca
     1321 ttgggggatg tgcgtgtccg gcgcggcgaa tagcggtatg gcacttgccg gggtgacgga
     1381 taatgtgctg ggcgtgcgga aatatgtgaa gacggcacgc aatgaggcgc cggatgtgta
     1441 tctgctctat gacgggcgcg tcgcggtggc gtatccaccg gggcgctcct gggccggggg
     1501 cgcgtgcacg gcggggattg cggcgacgat gca
//
LOCUS       DASQCV010000008         1745 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_997159, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000008 DASQCV010000000
VERSION     DASQCV010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_997159"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..359)
                     /locus_tag="VEQ16_00080"
     CDS             complement(<1..359)
                     /locus_tag="VEQ16_00080"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013641069.1"
                     /note="involved in translesion DNA polymerization with
                     beta clamp of polymerase III; belongs to Y family of
                     polymerases; does not contain proofreading function;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HYP62247.1"
                     /translation="MPAFCRDCDMAVSTAACPRCGSVRIVRHAELFSLTIGHIDCDAF
                     FASIEKRDHPEWRDLPVIVGGGTRGVVSTCCYVARLYGVRSAMPMFKARKLCPQAIVV
                     PPDMRKYAAASRQIRAM"
     gene            complement(447..1556)
                     /locus_tag="VEQ16_00085"
     CDS             complement(447..1556)
                     /locus_tag="VEQ16_00085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
                     /protein_id="HYP62248.1"
                     /translation="MSESTGDKKHAPTERRLREAAERGDVGRSTELPKAAGVVALTLF
                     TLSAASGLGWKMLGIFAAMLAGAGTAPPQAAMGWAQGLMLAMLPLFGLVALISLASTL
                     VTGGFIFSLSLLKPDFSKILPQSGLAQVFSRNGFVETGKSLLKFAAIGGVGALSIWAR
                     QTDFAALASLSRPDFSAAIALVLQVVTAICVVLVLLAGGDAGLQFWLHRQKLRMSDAE
                     IREEMKDLAGNPHVKSRQRMLARKMARARQMSKIPEASVIVTNPTHYACAIRYRRGAD
                     KAPMLLAKGVGLLAEEIIAKGRGLGIPIVEAPPLARAVYRHVEPGDHVPVALYRACAE
                     VLAYVWRLQRWRAQGGAKPKPPPVREGEIQIGPRE"
     gene            complement(1549..>1745)
                     /locus_tag="VEQ16_00090"
     CDS             complement(1549..>1745)
                     /locus_tag="VEQ16_00090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HYP62249.1"
                     /translation="LAVNITVGLATVFAPSLNLLSIGFPLLILTGLWMMLASLPSVWP
                     MTVHLTTLCTAALGALLPHV"
BASE COUNT          340 a          532 c          605 g          268 t
ORIGIN      
        1 atcatcgcgc ggatctggcg cgaggcggcg gcatatttgc gcatatccgg cggcacgacg
       61 atggcctgcg ggcaaagctt cctggccttg aacatgggca tggcggagcg cacgccataa
      121 agccgcgcca catagcaaca ggtggacacc accccacgcg tgccgccgcc gacaatcaca
      181 ggaagatcgc gccattccgg atggtcacgc ttctcgatgg aggcgaaaaa cgcgtcgcaa
      241 tcgatatggc cgatcgtgag gctgaaaagc tctgcatgcc gcacgatgcg cacactgccg
      301 cagcgcgggc aggcggccgt cgagacggcc atatcgcagt cgcggcagaa ggcgggcatt
      361 gtgagtttgt agcagggggc tttgcaccct gcacccccac caaggactct acccctgatg
      421 gggtccaagg ggcgaagccc attgcctcac tcccgaggcc cgatctggat ctcgccctcg
      481 cgcacgggtg gcggtttggg tttggcgccg ccttgggcac gccagcgctg gaggcgccag
      541 acataggcca gcacttcggc gcaggcgcgg tagagggcaa cgggaacatg gtcgccgggt
      601 tcgacatggc ggtagacagc gcgcgccagg ggtggggctt cgacgatagg gatgccgagg
      661 ccgcgccctt tggcgatgat ttcctccgcc agcagcccta cgcccttggc cagcagcatg
      721 ggcgccttgt ccgcaccgcg acggtagcgg atggcgcagg cataatgggt ggggttggtg
      781 acgatgacgg aggcttccgg gattttgctc atctgccggg cgcgggccat tttgcgggcg
      841 agcatgcgct ggcgcgattt cacatgcgga ttgccggcga ggtccttcat ctcctcgcgg
      901 atttcggcgt ccgacatgcg caatttctgc cggtgcagcc agaattgcag cccggcatcg
      961 ccgccggcga gcagcacgag cacgacgcag atggcggtga cgacttgcag tacaagggca
     1021 atggccgcgc tgaaatcggg acgggacaag ctggcgaggg cggcgaaatc cgtctgccgg
     1081 gcccagatgg agagcgcgcc aacaccgccg atggcggcga atttcaggag ggatttgccc
     1141 gtctcgacga atccgttacg tgaaaaaact tgcgccagtc cactctgcgg caggattttc
     1201 gaaaaatccg gcttgagcaa ggagagcgag aaaatgaagc cgcccgtcac cagcgtggag
     1261 gcgagcgaga tgagcgcgac gaggccaaac agcggcagca tagcgagcat gagcccctgc
     1321 gcccagccca tggcggcctg tggcggcgcc gtgccggcgc cggccagcat ggcggcgaaa
     1381 ataccgagca ttttccagcc aagtcccgaa gcggcgctga gcgtgaacag agtgagagcg
     1441 acgaccccgg cggctttcgg caattcggtg gagcggccga catcgccacg ctccgccgcc
     1501 tcgcgcaggc gccgctctgt cggggcgtgt ttcttgtcgc cggtgctttc agacatgcgg
     1561 tagaagcgca cccagcgccg ccgtgcagag cgtggtgaga tgcacggtca tgggccagac
     1621 ggagggcagg ctcgccagca tcatccacaa cccggtaaga atgagcagcg gaaaaccgat
     1681 gctgagcaga ttgaggctag gcgcgaacac ggtggcgagg ccaaccgtga tgttgaccgc
     1741 cagcg
//
LOCUS       DASQCV010000009         1958 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1162977, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000009 DASQCV010000000
VERSION     DASQCV010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1162977"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..770
                     /locus_tag="VEQ16_00095"
     CDS             <1..770
                     /locus_tag="VEQ16_00095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62250.1"
                     /translation="VAPSAAPLPEFGQGAATAAVVGGAPVMAESQPVIDPGFTVPTPI
                     EPAAQGSRNFLLVVGVVVIAVLLAGAAVYRSRQHREAVVAPALTTNSPVTAGAPADSA
                     ASQSQSPAPPQAQATQLEATKPAVPHQPAVMARKDKAPGENPEAAAGPSAAELQAQQQ
                     AAWEQARLRDAMETESDQLDSRAATVESSLDTLEQQMHHDGMGLRGDMVAARSNMRTD
                     IAKAKQAMDAGDTERARRYLDMAHREVEKLEAFLGRR"
     gene            867..>1958
                     /locus_tag="VEQ16_00100"
     CDS             867..>1958
                     /locus_tag="VEQ16_00100"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYP62251.1"
                     /translation="MQKCSSCGSEIQPAAAFCPACGKPASSDVSETLAADTPTRPPVP
                     KARSSAPPSRPPSSATRQNRYEGRFLPGTLVAGRYRVIALLGRGGMGEVYRADDLSLG
                     QEVALKFLPESTADEETLERFRNEVRTARRISHPNVCRVFDIGQAGNQVFLSMEYVDG
                     EDLGSLLRRIGRLPGDKAAEIARKICAGIAAAHAKGVLHRDLKPANIMLDGRGEILIM
                     DFGLAGLAHEIEDYRSGTPAYMAPEQLAGEEVTAKSDIYSLGLVLYEVFTGKAAFDGR
                     TLEEIVRVRSDATPSRPSALVKDLDPAVEGIILRCLENDPAKRPESALGVAAALPGGD
                     PLAAALAAGETPSPQIVAAAGEKVGLKARA"
BASE COUNT          380 a          609 c          643 g          326 t
ORIGIN      
        1 aagtcgcgcc atctgcggcc ccgctgccgg agtttggaca gggcgctgcc actgcagccg
       61 tcgtcggagg agcgccagtc atggccgagt cccagcccgt catcgatccc ggtttcaccg
      121 ttcccacccc aatcgagccg gcagcgcagg gcagccgcaa tttcctgctg gtggttggcg
      181 ttgtcgtgat cgcggttctt ttggccggtg ctgcggtcta caggtcacga cagcatcgtg
      241 aagccgtagt tgcgcctgcc ctgacaacga actcgccggt cactgccggt gcgcccgccg
      301 acagtgcggc cagtcagagt cagagcccgg cgccgccaca agctcaggca actcagctcg
      361 aggcgaccaa gcccgccgtt ccccatcagc ccgcagtcat ggcgcgaaag gacaaggccc
      421 cgggcgagaa tccagaggca gcagcaggcc catcggcggc agagctccaa gctcagcagc
      481 aggctgcttg ggagcaagca agattgcggg atgccatgga gacggaaagc gatcagctcg
      541 acagccgcgc tgcgaccgtc gagagcagcc tcgatacgct tgagcagcag atgcaccacg
      601 acggcatggg cctgcgtgga gacatggtag ctgcccggag caatatgcga accgacattg
      661 ccaaagccaa gcaggcgatg gatgcgggcg acacggaacg cgcgcggcgc tacctcgaca
      721 tggcccaccg cgaagttgag aaactggaag cattcctcgg tcgccgctag gttccggttt
      781 gcggagaaaa ataccggtcc atttcccggg tccgggcccg ctgaatcagc gataagatat
      841 tgagaatttg gaagtgggtg tctcaaatgc agaagtgctc ttcctgcgga tcggagattc
      901 agccggcggc tgcgttctgt ccggcgtgtg ggaagcccgc cagttccgac gtgtcggaga
      961 cgctggcggc cgacactcca acccggcctc cagttcccaa ggcccgcagt tcggctccgc
     1021 cttcgcgccc gccatcttcg gccacccggc agaatcgata cgaaggccgc tttctgcccg
     1081 gaacgctggt ggctgggcgt taccgcgtca ttgcgctgtt ggggcggggc ggaatgggcg
     1141 aagtctaccg cgccgacgac cttagcctgg ggcaggaagt ggcgctcaag ttcctgcccg
     1201 aaagcaccgc ggacgaggaa acgctggagc gctttcgcaa tgaagtgcgc accgcacggc
     1261 ggatttctca tcccaacgtc tgtcgggtct tcgatattgg acaggccggg aaccaggtat
     1321 ttttgtcaat ggaatacgtc gatggcgaag acctgggctc gctgctgcgc cgcattggac
     1381 gcctgcctgg cgacaaagcc gctgaaattg cgcgcaagat ctgcgccggt attgcagctg
     1441 cgcacgccaa gggagtgctg caccgcgatt tgaagcccgc caatatcatg ctcgacggcc
     1501 ggggagagat cctcatcatg gacttcggcc tggccggatt agcgcatgaa atcgaagact
     1561 atcgcagcgg caccccggcc tacatggctc ccgaacagct tgcgggcgag gaagtcacgg
     1621 ccaagagtga catttattca ctcggcctcg tgttgtacga agtcttcacc ggaaaagccg
     1681 cattcgacgg ccgcaccttg gaagagatcg tgcgggtgcg cagcgacgca acgcccagcc
     1741 gcccatcagc gctggtcaag gacctggatc cggcagtgga agggatcatt ctgcgctgtc
     1801 tggaaaacga tccggcaaag cggcccgagt cggcgttggg ggtggctgcc gctttgcctg
     1861 gcggtgaccc gctcgcggcc gcactggcag cgggggaaac gccgtcgccg cagatcgtgg
     1921 ccgcagcggg agagaaggtc ggcctcaagg ccagggcg
//
LOCUS       DASQCV010000010         1736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_167994, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000010 DASQCV010000000
VERSION     DASQCV010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_167994"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1526)
                     /locus_tag="VEQ16_00105"
     CDS             complement(<1..1526)
                     /locus_tag="VEQ16_00105"
                     /inference="COORDINATES: protein motif:HMM:NF013109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HYP62252.1"
                     /translation="MHYDRGCWPQDLAAGLVVTLVLIPSAIAYADLAGLPPVAGLYAA
                     LGGMIAFALFTSSRHVIVGPDAALAIMVGAAVAPLADGDPSKAVALSAWLALLAAAIL
                     LLAAWLRLGAAADFLSSPVMLGFMNGAAVVIMVSQLGKLCRIPLEEDNTLLRLVEWVT
                     RFGETHWLTLGLGLAAIGILAALRLWQPRVPGTIVIFALALVAGRCVDFADAGMQVIG
                     PIDTRLAVPVPPELSFADVPRLFTAALGLAFLIFPEGILLGRAMADRHGYDIDPDREL
                     AAFGVANLVTGLLRSFAVGSSQSRTLLNSATGGRTQMVSFAAALLLIAFLYLLASWIA
                     TLPAVAIAAILIFTGFTLIEVRGYGKLWRLHRFSALVSLTTSAAVIILGVLPGILLGV
                     FLSLLNLLSQIARPQDALLGRVPGSPTLHDIGDDEAAHTIPGLVVYRFYGPLVFANIR
                     FFIERLEHFLADEAGPVRQVILDARAIPEIDVTAAEQLRVFVTRLGERGIRFVVAKAH
                     L"
BASE COUNT          376 a          554 c          577 g          229 t
ORIGIN      
        1 agatgggcct tggcgaccac gaagcggatg ccgcgctcgc cgaggcgggt cacgaaaacg
       61 cgcaactgtt ccgccgcggt cacgtctatt tccggaatcg cccgggcatc caggatcacc
      121 tggcgaacgg gcccggcttc gtcggcaagg aaatgttcca ggcgctcgat gaagaagcgg
      181 atgttggcaa agaccagggg gccatagaag cggtacacga ccagcccggg aatggtgtgc
      241 gccgcttcgt cgtcgccgat gtcgtgcaag gtgggcgagc ccggcacccg gccgagcagg
      301 gcgtcctgcg ggcgggcgat ctggctgagc aggttgagca aggacagaaa aactcccagc
      361 aggatgccgg gcagcacacc caggataatc accgcggccg atgtcgtcag cgacaccagc
      421 gcgctgaacc ggtgcagccg ccacagtttg ccgtagccgc gaacctcgat gagcgtgaat
      481 cccgtgaaga tcaggatggc ggcaatcgcg accgccggca gcgtggcgat ccacgatgcc
      541 aacaggtaca aaaacgcgat caggagcagc gcggccgcga agctgaccat ctgcgtgcgg
      601 cctcccgtgg cggaattgag cagcgtccgc gattggctgc tgcccaccgc gaagctgcgc
      661 aacaggccgg tcaccagatt cgccacgccg aacgccgcca gctcgcgatc cggatcgatg
      721 tcgtagccgt ggcggtccgc catggcccgg cccagcaaga ttccctccgg aaagatcaaa
      781 aacgccagtc cgagcgccgc cgtgaacagc cgcggcacgt cggcgaacga cagctcgggt
      841 ggcacgggga cggccaaacg cgtgtcaatg gggccgatga cctgcatgcc cgcgtcggcg
      901 aagtcaacgc agcggccggc caccagggcc agcgcgaaga tgacgatggt cccgggcacg
      961 cgcggctgcc acagccgcag cgccgcgaga atgccgatgg cggccaggcc cagccccagc
     1021 gtcagccagt gcgtttcccc aaagcgcgtg acccattcaa ccaggcgcag gagcgtgttg
     1081 tcttcctcca gggggatccg gcagagtttg ccgagctggc tgaccatgat gacgacggcg
     1141 gcgccgttca tgaaaccgag catgaccgga ctggacagga aatcggcggc cgcgcccagc
     1201 cgcagccagg cggccaagag cagaatggca gccgccagca aggccagcca ggcggacagg
     1261 gcgacggcct tgctcggatc gccgtccgcg agcggtgcga cggcggcgcc caccatgatg
     1321 gccagggccg cgtccgggcc gacaatcacg tgccgcgagc tggtgaacag ggcaaacgcg
     1381 atcatgcctc ccagggcggc atagagcccg gccacgggcg gcaacccggc caggtcggca
     1441 taggcaatcg ccgagggaat cagcaccagc gtgaccacca gcccggccgc caggtcttgc
     1501 ggccagcagc cgcgatcgta atgcaacagc agccgaacgc ccggcaacca atcgaggagg
     1561 cgctggaaat gggttggccg agtcatggga aaaataaagg ggacaggaaa tacaggggga
     1621 cattccttaa gctatcaatc acaacgcttg cgaattacaa aggatttttc atcgtactga
     1681 tattttccta attccaagtc agttgcaaac gttgtgagcc attcgcgaaa actgtc
//
LOCUS       DASQCV010000011         1605 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3153542, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000011 DASQCV010000000
VERSION     DASQCV010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3153542"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..435
                     /gene="fliS"
                     /locus_tag="VEQ16_00110"
     CDS             <1..435
                     /gene="fliS"
                     /locus_tag="VEQ16_00110"
                     /inference="COORDINATES: protein motif:HMM:TIGR00208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HYP62253.1"
                     /translation="YLESRVTSADPVELVNLLYQACTVAVREARHHLAEGRIAERSRE
                     INKAFEILVELEVSLDHERGGEISRRLAQLYVYMRQRLLDANMRQSDPPLTEVLGLLA
                     TLSEAWAGIRTPEPAAAQQAAAAWSQLPADEPVACGAHGWSL"
     gene            complement(459..770)
                     /locus_tag="VEQ16_00115"
     CDS             complement(459..770)
                     /locus_tag="VEQ16_00115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62254.1"
                     /translation="MSDFAVSSYLPGAAAPDAAMPPTGSRDPDRVHDAAQQFEALLMG
                     QILRSARQGGSGWLGSGEDSSAECATDFAEQQFAAALAHQGGLGLAALISSGLTAGVR
                     K"
     gene            complement(770..>1605)
                     /locus_tag="VEQ16_00120"
     CDS             complement(770..>1605)
                     /locus_tag="VEQ16_00120"
                     /inference="COORDINATES: protein motif:HMM:NF003676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HYP62255.1"
                     /translation="VTATLPAFAQPGMHIDITAAAIGDASNLQGGILVLTSLRGADGQ
                     VYAIAQGPVMTGGFSAGRGGNSQTVNHPTVGRAPAGATVERAAPSLAPKNAIRLQVRH
                     SDFTTASRIVAALNQRFTGDKPVARAENSGLVTVTVPTGYAARVTEFIAELEGLDVEA
                     DRPARVVINERTGTIVIGKDVRIAPVAILHGNLSVEIQTTMQITQPNALGQGTTEVVP
                     QTTTTAKEEKARSVLLRQGATVEELVRALAAIGSTPRDVIAILQNLRSAGALDAEIEV
                     I"
BASE COUNT          261 a          496 c          551 g          297 t
ORIGIN      
        1 tacctcgaga gccgggtgac ctccgcggac ccggtggaac tggtgaacct gttgtatcaa
       61 gcatgcactg tggcggtgcg ggaagcgcgt caccacctgg cggaaggccg gatcgcggaa
      121 cgctcgcggg agatcaacaa ggcctttgaa attctggtgg agttggaagt atcgctggac
      181 catgagcgcg gcggagaaat cagccggcgt ctggcccaac tctacgtcta catgagacag
      241 cggctgctgg atgccaacat gcggcagagc gatccgcctc ttaccgaggt cctgggattg
      301 ctcgcgacgc tttcggaagc ctgggccgga atcaggacgc cggaaccggc ggccgcccag
      361 caagcggcgg ctgcctggtc tcagctgccg gcggatgaac ccgtcgcgtg cggggcgcac
      421 ggttggagtc tgtaacttcc gtgagggcgg gccggcggct atttcctgac gccggccgtg
      481 aggccgctcg atatcagagc tgcaaggccg agaccgccct ggtgggcaag tgccgccgcg
      541 aattgctgct ctgcgaaatc ggtggcgcat tcggcagagg agtcttcgcc actgccaagc
      601 cacccgctgc cgccttgccg cgcactacgc aggatttgac ccatcaggag tgcttcgaac
      661 tgctgcgcgg cgtcatgcac cctgtcgggg tcgcgtgaac cggtaggagg catggccgcg
      721 tcgggcgctg ctgcgcccgg cagataactc gaaacggcga aatcgctcat cagatcacct
      781 ctatttcggc gtccagcgcg cctgcgctgc gtaggttttg cagaatggca atcacgtcgc
      841 gcggcgtgga gccgatcgcc gccagcgcgc gcaccagttc ttcgacggtg gcgccttgtc
      901 tcagtaacac gctgcgcgcc ttctcttcct tggccgttgt ggtggtttgc ggaaccacct
      961 cggtggtccc ttgacccagc gcattcggct gcgtgatttg catcgtggtc tggatctcca
     1021 cactgaggtt gccgtgcagg atggccactg gcgcaatacg tacatccttg ccgattacga
     1081 tggtgccggt tcgctcgttg atcacgacgc gcgccgggcg atcggcctcg acgtccagac
     1141 cctccagttc ggcaatgaat tcggtgactc gcgccgcata gccggtgggg accgtgaccg
     1201 tcaccagacc ggagttttca gcgcgagcca cgggcttatc gccggtgaag cgttggttga
     1261 gcgctgccac aatgcgggat gcggtagtga agtcggagtg gcggacttga aggcggatgg
     1321 cgttcttggg ggcaagcgat ggcgccgccc gttccacggt tgcgcccgcc ggcgcgcgcc
     1381 cgaccgtggg gtggttcacg gtctggctgt tgccgccgcg ccccgccgaa aacccgccgg
     1441 tcatcaccgg gccctgagca atggcgtaga cttggccgtc ggcgccgcgc agggaagtaa
     1501 gcacgaggat tccgccctgc agattgctgg catcgccgat ggcggctgcg gtgatgtcga
     1561 tatgcatgcc cggctgcgcg aatgcgggca aggtcgcggt cacca
//
LOCUS       DASQCV010000012         1540 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_168689, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000012 DASQCV010000000
VERSION     DASQCV010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1540
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168689"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            403..639
                     /locus_tag="VEQ16_00125"
     CDS             403..639
                     /locus_tag="VEQ16_00125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62256.1"
                     /translation="MNFQTVSLLMNYLEIGVLLAILFRLGRTFELIANTQRQLRRTIY
                     HLGEHRANEPGVNNALDGSSITLASGSARKPAEA"
     gene            1118..>1540
                     /locus_tag="VEQ16_00130"
     CDS             1118..>1540
                     /locus_tag="VEQ16_00130"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HYP62257.1"
                     /translation="MKQPVERRLTAVLATDVAGYSRLMGADEEGTHELLKAHFRQLIN
                     PKIKVHRGRTVKNTGDGMLVEFPSVVDAVRCAVEIQRAMIDRNADLPEDKHISFRIGV
                     NLGDVIVEDRDIFGDGVNIAARLEALAEPGGICISRTVR"
BASE COUNT          280 a          459 c          491 g          310 t
ORIGIN      
        1 tgacctgtta tttacccaca tattgtgtag gatgcgcccg gccttggtgt gccggccagg
       61 cccgcatggg gagcggtgtc ggggatgtcc cccaaacccg gcgccgctcc ttccctcgct
      121 ctctgctgct gcctggccag cgtcggcagc tttctggcga taatatcccg ccggcagcgt
      181 tggcgcatct tggggcttgt ccatgaggca cggcacagca gagaccccgc ggatcgggag
      241 ctttcccggc tactggccaa agaaacccct gcaagggacg ccttcttgac gctggcaagg
      301 gcagtgggtt gacgggtatt tgaataaaat ccgctccagt tagtttggat tggcggcatc
      361 ggggaatggt cagatgccca cccgagcgcc agggagcgga aaatgaattt tcaaacggtt
      421 agcctgctaa tgaactactt ggagatcggg gtgctgctgg cgatcctgtt ccgccttggc
      481 cgcacttttg agctgatcgc caatacacag cgccagctta gacgaacaat ctaccatctg
      541 ggggagcatc gcgccaatga accgggcgta aacaacgctc tcgatgggtc gagtatcaca
      601 ttggcttctg gctccgcgcg taaacctgcc gaggcgtaga gcacgattaa ttcgactctt
      661 tgggccgcct cccgcatgtg atcaacgctt gaacatcggc ctgtctgctc gcgcgatgac
      721 tgcccgctcg gcgtagcccg gtccgccgcg ccccggcaca cacaggccgc cgagacgcgg
      781 tcactcgcat tctcggacct ggtgggtggc gcgttgtgcg gggcgcggtg cagccttgcc
      841 gccgggcgac ccttagccca tgacggagag tgccgccgtg atttttttcg cagggtgtga
      901 gccagctcac acagccgcca cacatggcgc gagaatatcg gggtcgcggc gcaggcccaa
      961 ggggctgaac tgcagcgcat ttatctgcgg ccggggtcga tttgccgcag gtggcggctc
     1021 tctccgggcg ctggccacgg aagctgctgg gccgccgctg ttttcttggc atcagcgatt
     1081 gcggttctgc caatgttcgc cgttgctgaa ggaagctatg aagcagcccg tcgaacgccg
     1141 tctcaccgcg gtcctcgcca ctgatgtggc aggctattcg cgtctgatgg gcgccgacga
     1201 ggaggggacg cacgaacttc tcaaggcaca tttccgtcag ctgattaatc cgaagatcaa
     1261 ggtacatcgc ggccggaccg tgaagaatac cggcgatggg atgttggtgg aatttcccag
     1321 cgtggtggac gcggtgcgct gcgcggtgga gatccagcgc gcaatgatcg accgcaatgc
     1381 tgatctcccc gaagacaagc acatcagctt tcgaattggg gtcaacctcg gcgatgtaat
     1441 cgtcgaggac cgcgacatct tcggtgacgg cgtcaatatc gctgcgaggc tggaagcatt
     1501 agcagagccg ggcggcatct gcatctcgcg cacggtccgc
//
LOCUS       DASQCV010000013         2871 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2324771, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000013 DASQCV010000000
VERSION     DASQCV010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2871
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2324771"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..1249)
                     /locus_tag="VEQ16_00135"
     CDS             complement(86..1249)
                     /locus_tag="VEQ16_00135"
                     /inference="COORDINATES: protein motif:HMM:NF005077.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HYP62258.1"
                     /translation="MAEAYIVAARRTAGGRRNGRLAGVHPADLGAASVNAVLAETGLD
                     PAAVEDVIFGCVTQAGEQASHIGRHVVLASNLPQSVPAVSIDRQCGSSQQAVHFAAQA
                     IMSGTQDIVLAGGVESMSRVPMRLAHMTEQGYDQLSPAIHERYGVQEFSQFTGAAMIA
                     AKWGYTRERLDRFALSSHQKAIAATKEGAFAKEIVPVPVTLPDGTKMMHEVDEGIRFD
                     ASYESISAVKLLDPNGIISAANASQITDGSSAVLVVSEKALNEHRLAPLARIHSLTVT
                     AGDPVVMLEEPLYATEKALRKAGLKLDDIDLFEVNEAFASVPMAWQRELGADPAKLNV
                     NGGAVALGHPLGCTGAKLTATILHEMQRRQARYGMVTMCVGGGMGAAGIFERI"
     gene            complement(1420..1725)
                     /locus_tag="VEQ16_00140"
     CDS             complement(1420..1725)
                     /locus_tag="VEQ16_00140"
                     /inference="COORDINATES: protein motif:HMM:NF018717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1330 domain-containing protein"
                     /protein_id="HYP62259.1"
                     /translation="MPAYVIILREEPVQDPAAMAEYQRLISLGPPPENLKPLVLYGAQ
                     ESLLGTPPDGVVVLEFPTIKDAKEWYDSPRYREARVHRQKAARHREIIVEGFAFPAA"
     gene            complement(1753..2499)
                     /locus_tag="VEQ16_00145"
     CDS             complement(1753..2499)
                     /locus_tag="VEQ16_00145"
                     /inference="COORDINATES: protein motif:HMM:NF009466.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP62260.1"
                     /translation="MTRVALVTGAAAGIGKACAVRLAREGKAVGVLDLNLEGCQAVVD
                     EITAAGGKAIALQASIVDRAQMSAAVDKLRAAFGPVTIIVNNAGISNFIPFEELTDSD
                     WDRMFEVNTKGTFVVTQICLPDMKAAKWGRVINISSSSAQTGSIEQVHYSASKGAVVS
                     MTRSLAQALGPYGITVNNIPPGAVMQTIMSEANKHRFQIPMEQLVKIIPVGRTGVPDD
                     IANACAWLASEDSSYVSGQTIGVNGGRVVS"
BASE COUNT          507 a          888 c          905 g          571 t
ORIGIN      
        1 ggtcctccag tataaagctc ccgcctttga cgacttttct actctctgca atgctcgtca
       61 ttctcgtccc ctccgttggc ttcaactata ttctctcaaa aatacctgcg gcgcccatgc
      121 cgccaccgac gcacattgta accatgccgt atcgtgcctg gcggcgctgc atctcgtgca
      181 ggattgtcgc cgtcaatttc gcgccggtgc agccgagtgg atggccgagc gcgactgcgc
      241 cgccattgac attgagcttc gcaggatctg cgcccagctc acgctgccaa gccatcggga
      301 cgctggcgaa ggcttcgttg acttcgaaca gatcgatatc gtcgagtttg aggccagcct
      361 tcctgagggc tttctccgtg gcgtagagcg gctcctccag catgacgaca gggtcgccgg
      421 cagtgacggt gagggagtgg atgcgcgcca gcggggcaag gcgatgctcg ttcagcgcct
      481 tctcggaaac gaccagcacg gcggaggagc catcggtgat ctggctggcg ttggcagcgg
      541 agatgatgcc attggggtcg agcagtttca ccgccgagat ggactcatag gaggcgtcaa
      601 agcggatgcc ttcatcgact tcgtgcatca tcttggtgcc gtcgggcaaa gtgactggca
      661 cggggacgat ttccttggcg aaggcacctt ccttggtggc ggcgatggcc ttctggtggc
      721 tgctcagcgc gaagcggtcc agccgctcgc gcgtatagcc ccatttggcg gcgatcatgg
      781 ccgcacccgt gaactggctg aattcctgca cgccatagcg ctcatggatg gcggggctga
      841 gctggtcgta accctgctcg gtcatgtgcg cgagacgcat cggcacgcgg ctcatggatt
      901 ccacgccgcc ggccagcacg atatcctgcg tgccggacat gatggcctgg gcggcgaaat
      961 ggacggcctg ctgcgaggag ccacattgcc ggtcgatgga aacggcggga acactctgcg
     1021 gcaggttgga ggcgagcacg acatggcggc cgatatgcga ggcttgttcg ccggcctggg
     1081 tgacgcagcc gaagatcaca tcctccacgg cggcggggtc gagcccggtt tccgccagca
     1141 cggcattgac gcttgcggcc ccgagatcag cgggatgcac gcccgcgagg cggccattgc
     1201 ggcgcccgcc ggcggtgcgc ctggcggcga cgatgtaagc ttcagccatt cgactctcct
     1261 aatgacttat ccgcccggaa agcggacggt ttgttcgttc atgcctatct gttaccgcgc
     1321 acgcaatcgc gcaagcggcc ccgcgccggg gcaggcttgc gtctgtgccg tatggggtaa
     1381 acgcaacaag cccggcgcgg aggccgggct tgttgctggt tacgcggcgg ggaaggcgaa
     1441 gccctcgacg atgatctcgc gatgcctcgc cgccttctga cgatgcacgc gggcctcgcg
     1501 gtagcgcggg ctgtcatacc attccttggc gtccttgatg gtggggaatt ccaacaccac
     1561 cacgccatcc ggaggcgtgc ctagcagcga ttcctgggcg ccgtacagga cgagcggctt
     1621 caggttttcg ggaggcggcc ccagagaaat gaggcgctga tactcggcca tcgccgcagg
     1681 gtcttggact ggttcctcac gcagaatgat cacataggct ggcatgttag acctcgtgct
     1741 ggggtgaaaa ttttaggaaa cgacgcgccc gccattcacg ccgatggtct ggccggagac
     1801 ataggagctg tcttcggagg cgagccaggc gcaggcattg gcgatatcat ccggcacgcc
     1861 ggtgcggccg acggggatga tcttcacaag ctgttccatc ggaatctgga aacggtgctt
     1921 gttggcttcc gacatgatgg tctgcatcac cgcaccgggc gggatgttgt tcacggtgat
     1981 gccatagggg ccaagcgcct gggcgagcga gcgcgtcatg gacaccaccg cgcccttgga
     2041 ggcggaataa tgcacctgct cgatgctccc cgtctgcgcg ctggaggagg agatgttgat
     2101 cacgcggccc catttcgccg ccttcatgtc tggcaggcag atctgggtga cgacaaacgt
     2161 gcctttcgtg ttgacctcga acatgcggtc ccagtcggaa tccgtcagct cctcgaaagg
     2221 gatgaagtta gaaatgccgg cattgttcac gatgatggtg accgggccga aggcggcgcg
     2281 cagcttgtcc acggcggcgc tcatctgcgc gcggtcgacg atgctggcct gcaaagcaat
     2341 ggccttgccg ccagcagcag tgatttcatc caccacggcc tggcagcctt ccaggttcag
     2401 gtcgagcacg ccgaccgcct tgccttcgcg cgccagacga accgcgcagg ctttgccgat
     2461 ccccgccgcc gcacccgtga ccaatgcaac tcttgtcatt tcattcctct ttcttaacat
     2521 attcgcctgc ccccggcagg ccgtgacatt cttatccgcg atggtgatga caggcgccgg
     2581 ttcagcctgc cgcgttcctc accccgccac ctgtccagac aggtttttct ctttaatacc
     2641 ctggcacgcg cataaaacaa ccgcgccgcc ctgggagagc ggcgcgggag caaaaatcag
     2701 gcgtcctcgc cgtagccttc cttgaagtcg gtgtaccagg acttgaactc gtcataattg
     2761 ggcgattcca tcgcattcac atattcatcg atgggcacct ggatgacggc gggcttgccg
     2821 ctggctagag cgcgctcaat cgctggcacg atatcctcct cgcgctcgac a
//
LOCUS       DASQCV010000014         3317 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_334785, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000014 DASQCV010000000
VERSION     DASQCV010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_334785"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2569
                     /locus_tag="VEQ16_00150"
     CDS             <1..2569
                     /locus_tag="VEQ16_00150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62261.1"
                     /translation="AAPISSIRPPERTDEGARTRLTAIQAAAGQLPSLSVIIVAPRGR
                     AAAVNDTLESLHAQWFRPAAIRILAAEEVAIKGVTTVAVPPEPEAATRIACAELNLEA
                     NAADYVAIINAGDTLAPDACLRFALIAKAEDASMLYCDEIVPRAGGAWVRHKPGWDVT
                     RLRQAAYIGDWVWYRSQDVLRAGGFNPNRAGAEEYDMQLRLAELEAKIMRVPEALFTR
                     SAQSRRDDIKTDVFCARAASSLKQHLERMNLPAEVQNRQHPGLFHHMRLTPDPGTSIL
                     LLCDGGDIPALDAWLTALLSGDALSGPIILAGAALSQPMQAYLAAVTEQTAALEGKVL
                     AVAPSPDLTFPQALANAIAMAATPHLAILDIRCRPAEANWAQLLRSRLADPSVVMAGG
                     RTLVPSGPDLRQAAVQGPIIIGADTRLGAGHRPDDPGPGGWLLTDQEVSALAPPGLLV
                     RAAALQDCQFPALAGDALWIDVCAQLRAAGGTLVWTPDASFIAPPDAVQPDAASNFRA
                     GTDAARALPWADPYHHPALSLHGDLLAAEARSGLVRATPEDALSLLVSGDPLAGAPVL
                     NAARALRRAGIIEADWTPELPSAADLGRHAAAAWVRVNPMRIPQLHSPAYTAVYTQVP
                     AQEALPALEAAAAVYCTSPGLVTQLRRLGTPGREVTLWRPALSTRIWQELTFGTGLNT
                     KPRALWFDEGIAPSWLVELINDTLDIASWIVVERQGASYAGSVARIGVQESEFAWAQA
                     MAELGPQIMLRPAGPDTHADHYPSLLAAAAGCRLLVDERLDTPPSLGALALPSRAGVW
                     REALKKAINELKTTLEQGRATRAAALALPGLEAASPPWLGLELTPVPDDAAYRSAAE"
     gene            2566..3249
                     /gene="flgA"
                     /locus_tag="VEQ16_00155"
     CDS             2566..3249
                     /gene="flgA"
                     /locus_tag="VEQ16_00155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HYP62262.1"
                     /translation="MSPRLLAALLAAWPVLGWAAPEAGREDPSAVVASVRQAAQALAP
                     AGATLSLGPVNGAQSMQACPGALAVEMSGSAPYEQAAAHCPALGWTLYVTVTVTQREA
                     VVVAARPIAPGQPLTADDLTLATLPSQQFAGRQVYFDPSQLIGATPDMAIAAGMPLTA
                     DSVQAPVMVKAGQTVTVNVQSGGVLLTLDATAEQTGRIGDTILLSNPSTGRRFTAQVT
                     ADGVELLLQ"
BASE COUNT          517 a         1201 c         1091 g          508 t
ORIGIN      
        1 ggcggcgccc atcagctcca tccgccctcc cgagcgcacg gatgaggggg cacgcacgcg
       61 gcttacggca atacaagcgg cagcgggcca attgcccagc ctgtccgtca tcatcgtcgc
      121 cccgcgcggg cgtgccgccg cagtcaacga cacactggaa tcactgcatg cgcaatggtt
      181 ccggcctgct gccatccgca tcctcgccgc cgaggaggtg gcgatcaagg gcgtcactac
      241 cgtcgccgtg ccgccagagc cggaggcagc cacgcgcatt gcctgcgcgg agctgaatct
      301 agaagccaac gcggccgatt atgtcgccat catcaatgcc ggcgacacgc tcgcccccga
      361 tgcctgcctg cgcttcgcgc tcatagccaa ggccgaagat gcgtccatgc tctattgcga
      421 cgagattgtg ccgcgcgccg gcggcgcctg ggtgcggcac aagccgggct gggatgtcac
      481 aaggctgcgc caggccgcct atatcggcga ctgggtctgg taccgcagcc aggatgtgct
      541 gcgcgccggc ggcttcaacc ccaaccgcgc cggggccgag gaatatgaca tgcagctccg
      601 cctcgccgag ctggaggcga aaattatgcg cgtgccagag gccttgttca cgcgcagcgc
      661 gcagagccgg cgggacgaca taaaaacgga tgtgttctgc gcccgcgccg cgtcatcgct
      721 gaagcagcat ctggaacgga tgaacctgcc cgccgaggtg cagaaccgcc agcatcccgg
      781 cctgttccac catatgcgcc tgacgcccga tcccggcacc agcatcctgc ttctgtgcga
      841 tggcggagat atcccggcgc tcgatgcctg gctcaccgct ctgctcagcg gcgacgcctt
      901 gagcggcccc atcatcctgg ccggcgccgc gctcagtcag ccgatgcagg cctatctcgc
      961 cgccgtcacc gagcagacgg cggcgctgga gggcaaggta ctggcggtgg cgccatcgcc
     1021 agacctcact ttcccccagg ctctggccaa cgccatcgcc atggccgcca cgccgcatct
     1081 ggccattctc gacatacgct gccgcccggc cgaggcgaat tgggcgcagc tcctgcggtc
     1141 acgtttggcc gacccatcgg tggtcatggc gggcgggcgc acgctcgtac cgtcggggcc
     1201 ggatctgcgt caggccgcag tgcaggggcc catcatcatc ggcgccgata ccaggctcgg
     1261 ggccgggcac aggcccgatg atcccggccc cggcggctgg ctgctgaccg accaggaagt
     1321 cagcgcgctc gctcctcccg gactgctggt acgcgccgcg gcgctgcagg attgtcagtt
     1381 ccccgctttg gccggcgatg cgttgtggat cgatgtctgc gcccagctgc gcgcggccgg
     1441 cgggacattg gtctggacgc ctgacgcctc cttcatcgcc ccgcccgatg cggtgcagcc
     1501 cgatgcagcc agcaatttcc gcgccggcac agatgcggcg cgggcgctgc cctgggccga
     1561 cccttaccac catcccgcgc tctcgctaca tggcgacctg ctggccgcgg aggctcgctc
     1621 cggccttgtc cgcgccaccc cggaagatgc gctgagccta ctggtcagcg gcgatcctct
     1681 ggccggggcg ccggtactca atgccgcccg cgccttgcgc cgcgctggca ttatcgaggc
     1741 ggactggacg ccggaattgc caagcgctgc cgatctcggc cgccacgctg ctgccgcctg
     1801 ggtgcgcgtc aacccaatgc gcataccgca gcttcacagc cctgcttaca ccgccgtgta
     1861 cacgcaggtg cctgcgcagg aagcgctgcc ggcgctggaa gctgccgctg cggtttactg
     1921 cacctcgccg gggctggtca cacaattgcg ccggctcggg acgccgggcc gggaggtgac
     1981 gttatggcgc ccggcgctca gcacgcgcat ctggcaggag ctcaccttcg gcacagggct
     2041 caacaccaag ccacgcgcgc tctggttcga tgagggcatc gccccgtcct ggctggtcga
     2101 gctcatcaac gacacgctcg acattgcttc ctggatcgtc gtggagcgcc agggggcaag
     2161 ctatgccgga tctgtggcgc gcatcggggt gcaggaatcg gaattcgcct gggcccaggc
     2221 catggcggaa ttgggaccgc aaatcatgct ccgcccggcc gggcccgaca cccatgccga
     2281 ccattatccc agcctgctcg ccgccgctgc cggctgccgg ctgctcgtcg atgagcggct
     2341 cgatacgccg cccagcctcg gcgcgctggc actcccgagc cgcgccgggg tttggcggga
     2401 ggcgctgaaa aaggcgatca acgagctgaa gacaacgctg gagcaaggcc gcgccacccg
     2461 cgccgccgcc ctcgctctgc cggggctcga ggccgcgtcg ccgccctggc tggggctgga
     2521 gctcaccccg gtgccggacg acgccgccta caggagcgcc gcggaatgag cccgcgcctg
     2581 ctggccgccc tgctcgccgc ctggcccgtc ctcggctggg cggcgccgga ggcgggccgg
     2641 gaagatccaa gcgcggtggt ggcttccgtg cgccaggcgg cgcaggcttt ggccccagcg
     2701 ggcgccacgc tcagcctggg cccggtaaat ggcgcacaat ccatgcaggc ctgtcccggc
     2761 gcgcttgccg tggaaatgag cggctcggcc ccctatgagc aggccgccgc gcattgccct
     2821 gctttgggct ggacacttta cgttaccgtc accgtcacgc agcgcgaggc cgtggtggtg
     2881 gcggcacggc ccatcgcgcc gggccagccg ctcacggcgg atgatctcac gcttgccaca
     2941 ttgccgtcgc agcaattcgc cggccgccaa gtctatttcg acccttccca actgatcggc
     3001 gccaccccgg atatggcgat tgcagccggc atgccgctca ccgccgattc cgtgcaggca
     3061 cccgtgatgg tgaaggccgg gcaaaccgtg acggtgaatg tgcaaagcgg cggcgtgctg
     3121 ctcacgctcg atgccaccgc cgaacagacg gggcgcatcg gcgacaccat cctgctcagc
     3181 aaccccagca cagggcgccg cttcaccgcg caggtgacgg cggatggcgt cgagctgctc
     3241 ctgcaatgac gagggcaagg atgaagattt cctcacgaac aacgcaaatt aaaattgcgg
     3301 cgcaaggcaa acttcgc
//
LOCUS       DASQCV010000015         2372 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_998299, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000015 DASQCV010000000
VERSION     DASQCV010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_998299"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..242)
                     /locus_tag="VEQ16_00160"
     CDS             complement(<1..242)
                     /locus_tag="VEQ16_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012224745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TGS domain-containing protein"
                     /protein_id="HYP62263.1"
                     /translation="MPAITLPDGSVRSFDGAVTGTTIAQSIGPGLARAALVMVVNGQE
                     LDLSREITEDSSVRFITRKDTEALELIRHDAAHVMA"
     gene            complement(275..1150)
                     /locus_tag="VEQ16_00165"
     CDS             complement(275..1150)
                     /locus_tag="VEQ16_00165"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HYP62264.1"
                     /translation="MSRVLVIRHGAFGDMVLSFPAMAAIRAHHPYDNITILTTKLYAP
                     LLEASPWCDRVEVDEKPSWWDFSALVRLRRQLAGFDMVYDLQTSGRSSKYFALAGRPP
                     WSGIAKGCAFPDAPNRTALHTRERLAQQLRLAGIQALPQPDLSWLAGPVPELPARYAV
                     LVPGAAPHRPEKRFPAERFRQVAEGLDMKVVIVGTASERPLAQAIGGIDLTGKTDFLQ
                     LASVFRGASLAIGNDTGPMHLAAALGIPCISLFSAASDPDLTAPRYPDGGWPCILRSG
                     SLQELPVAQVCAALP"
     gene            complement(1147..2301)
                     /locus_tag="VEQ16_00170"
     CDS             complement(1147..2301)
                     /locus_tag="VEQ16_00170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYP62265.1"
                     /translation="MLPPAAMITRPKTILQLLPRLDHGGAERVVVEIAEAVTQSGHRA
                     IIAAEPGHLAGAAARAGAELVPLPLATKSPFKIWRNINRVVDLSLDEHVDLIHAHSRA
                     PAWSGYHAAKKLRVPFVTTYHGSYSENSAFKRRYNQIMVSGDRVVAVSEYIADLIRTR
                     YGTRDEKIRVVHGGVDTRIFDPDTVRGDRSVRLARAWRADAGHPAIMLPGRLTGWKGQ
                     KLFIQALAKMRHKDALGILVGSDQGRAAYTGSLVSLAEHLGVANRLRIVGHTDDMPAA
                     LMLADIVVNCSTSPEAFGRTIIEAQSMGRIVVAADHGGARETIIGGSTGLLFPSGNAA
                     ALAGILDDVLDQDVASRIAFGAGARAHIEENFSLKVMQNKMLAIYGELLG"
BASE COUNT          450 a          735 c          800 g          387 t
ORIGIN      
        1 tccgccatca catgggcggc gtcgtggcgg atcagctcca gcgcctctgt atccttgcgg
       61 gtgatgaagc gaacagagga atcctcggta atttcgcgcg agagatccag ctcctggccg
      121 ttgacgacca tgaccaaggc ggcgcgggcc agacccggac cgatggattg cgcgatggtc
      181 gtgcccgtca ccgcgccatc gaaggagcga acggaaccat cgggcaaggt aatggcgggc
      241 ataggtctct ctctggctga aaaatttgaa ggcgttatgg cagggccgcg cacacttgcg
      301 caaccggcag ctcttgcagg cttccgctcc gtaaaatgca gggccagccg ccgtccgggt
      361 agcggggtgc ggtcaggtcc gggtcggagg cggcggaaaa gagcgaaatg cagggaatac
      421 caagcgccgc ggcaagatgc atggggccgg tatcattgcc gatggccagg gacgcgccac
      481 ggaacacgct ggcaagctgg aggaaatcag tcttgcccgt gaggtcgata ccgccgatgg
      541 cctgcgccaa gggccgctca cttgccgtgc cgacaatgac caccttcatg tccagccctt
      601 cggccacctg gcgaaaccgc tccgccggaa aacgcttttc cggccggtgc ggggcggcac
      661 cgggcaccag cacagcatag cgcgcgggca gctctggcac gggaccagcg agccaggaca
      721 ggtccggctg cggcaacgcc tggatgccgg cgaggcgaag ctgctgcgct agccgctcgc
      781 gcgtatgcag ggcggtacgg ttgggcgcgt cggggaaagc gcaacctttg gcgataccag
      841 accagggcgg gcgcccggcc agggcaaaat atttcgagct acggccggag gtctgcaggt
      901 catacaccat atcaaacccg gcgagctggc ggcgcagccg caccagggcg gaaaaatccc
      961 accagcttgg cttctcatcc acctcgacgc ggtcgcacca gggcgaggcc tccagcaaag
     1021 gcgcgtaaag tttagtggtg aggatggtga tgttgtcata cgggtgatgc gcgcggatgg
     1081 cggccatggc cgggaaggac aggaccatat cgccgaaggc gccgtgacgg atgacgagta
     1141 cccggctcac cccagcaatt ccccgtaaat cgccagcatc ttattctgca tcaccttcaa
     1201 ggaaaaattc tcctcgatat gcgccctggc cccggcgccg aatgcgatgc gggacgccac
     1261 gtcctggtcc agcacatcat cgagtatacc cgccagcgcc gccgcattgc cagacgggaa
     1321 aagcaggccc gtgctgccgc caatgatggt ttcgcgcgcg ccgccatggt cggcggccac
     1381 cacgatgcgg cccatggatt gcgcctcgat gatggtgcgg ccgaaagctt ccgggctggt
     1441 cgagcaattc accacgatat cggccagcat caaggcagcc ggcatgtcat ccgtgtggcc
     1501 gacaatgcgc aagcggttgg ccacgccgag atgctccgcc agggagacga gactgcccgt
     1561 ataagccgcc ctgccctggt cgctgcccac gagaatcccg agcgcgtcct tatggcgcat
     1621 cttcgccagt gcctggatga agagtttctg ccccttccac cccgtcagcc ggccgggcag
     1681 catgatggcg ggatggccgg catcggcccg ccaggcgcgc gccaggcgca ctgagcggtc
     1741 gccacgcaca gtgtcgggat caaaaatccg cgtatcgacg ccaccatgca cgacgcggat
     1801 tttttcgtcc cgcgtgccgt agcgggtcct gatgaggtcg gcgatgtact cgctcaccgc
     1861 caccacgcgg tcgccgctga ccatgatctg gttgtaacgc cgcttgaagg cggagttttc
     1921 actatagctg ccatggtagg tggtgacgaa gggcacgcgc agcttcttcg cggcatgata
     1981 gccgctccag gccggggcgc gggaatgggc gtggatgagg tcgacatgct catccagcga
     2041 caaatcgacg acgcggttga tgttgcgcca gattttgaaa gggcttttgg tggcgagtgg
     2101 caagggcacc agctccgccc ctgcgcgggc ggcagcgccg gcgagatggc cgggctcggc
     2161 agcgatgatg gcgcgatggc cggactgcgt caccgcctcg gcaatctcca ccaccacccg
     2221 ctcagcgccg ccatggtcga gacggggcag gagctggaga atcgttttag ggcgggtgat
     2281 catggcggcg ggcggtaaca tggatcgggc ttgaagggga gattgccatg ccacgcattt
     2341 ttcgggagcc gggcgtgcct ctggcttatg ag
//
LOCUS       DASQCV010000016         2142 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_169041, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000016 DASQCV010000000
VERSION     DASQCV010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169041"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..742)
                     /locus_tag="VEQ16_00175"
     CDS             complement(<1..742)
                     /locus_tag="VEQ16_00175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62266.1"
                     /translation="MEALAGGLGIFGGLMNMFGSSPANNAMNIQAPPMYTQDPSAGFA
                     GQQSMIPGLGQYNLGGQNLGAYQSYLSSALSNPYGFGGQSAANAFSGAGMGTSLGALG
                     NAGALGGQVPGMIGASNAVLGSAFDPQGALYGRTLGQLTDQEGAYLANAGVGTSPYGA
                     GLMGQTLGNFNIDWQNQQLGREVQGLGAYTGGIGAAGQTASGAYGLGSQAAGGGAQFG
                     MLPWNTFNTLGGMPLNLLSGASQYGVGAA"
     gene            complement(744..1289)
                     /locus_tag="VEQ16_00180"
     CDS             complement(744..1289)
                     /locus_tag="VEQ16_00180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62267.1"
                     /translation="MSQPVTKLRVVTPSVDEKPSPKLRYGFEELIVTCRDYPPLLKQC
                     VKEVGPLRAKCPLDFDWRQAFQANAAGLLLILAARVDDDDDSLVGFCINVIGRPIKYS
                     TTLHAQVDMMYLHPAWRRGWAAINMLKANELRMRQIGVKRLLAAEPTRFKNHTGLRLR
                     QLFKFMGYHPVEIVWEKYLED"
     gene            complement(1426..1941)
                     /locus_tag="VEQ16_00185"
     CDS             complement(1426..1941)
                     /locus_tag="VEQ16_00185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62268.1"
                     /translation="MLKKLLRSLAFVAALTVTALAGGIQSMPTTAPFNEPSQTVATWN
                     AFVQYLNGTAGLYTAGTAPTGTALPSIGAFCSASGGTPQTCNGQRGVITTNSLATAAS
                     TAANFVINNSLITANNACTATIGNTTSTGTPTIAQVVTGAGTITINIANVATAAALNN
                     TVNINFSCYVN"
     gene            complement(1951..>2142)
                     /locus_tag="VEQ16_00190"
     CDS             complement(1951..>2142)
                     /locus_tag="VEQ16_00190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62269.1"
                     /translation="SSTYWVGAGSATGFAAINGGSVTIGQATITFTPSGSVSLGNMGS
                     GGGHPTGAPDFGFYKMIKL"
BASE COUNT          403 a          691 c          638 g          410 t
ORIGIN      
        1 tggcagcacc aacaccgtac tgcgatgcac cgctcaacag gttcaacggc atgccgccca
       61 gcgtattgaa ggtgttccac ggcagcatgc cgaactgggc accaccacct gcggcttgcg
      121 accccaggcc gtaggcgccg gacgccgtct gcccggcagc gccaatgccg ccggtatagg
      181 cgcccaggcc ctgcacctcc cgcccgagct gctggttttg ccagtcgata ttgaagttgc
      241 cgagcgtctg ccccatcaac ccggcaccat aaggcgaggt gcccacacca gcattggcca
      301 gatacgcccc ttcctgatcg gtgagctgcc ccaaggtccg gccgtagagc gctccctgcg
      361 gatcgaaggc agagccgagc accgcgttgg aggcaccaat catgcccggc acctgcccac
      421 caagcgcgcc ggcattgccg agcgcgccca gactggtacc catgccagca ccgctgaagg
      481 cgttggccgc gctttgcccg ccgaagccgt agggattgct aagcgccgag ctgagataac
      541 tctgataggc gcccaggttc tggccaccga gattgtattg cccgagaccg gggatcatgg
      601 actgctgccc ggcaaagccg gcagacgggt cctgcgtata catcggcggc gcctggatgt
      661 tcatggcgtt gttggcaggg ctgctgccga acatgttcat caagccgccg aatattccca
      721 aaccgcctgc caatgcttcc atatcaatcc tccaggtact tctcccagac gatctcgacc
      781 ggatgatagc ccatgaactt gaaaagctgg cgcaggcgca ggccggtatg gttcttgaac
      841 cgcgttggtt ctgccgccaa aaggcgcttg accccgatct gccgcatgcg cagctcgttc
      901 gccttcagca tgttgatcgc cgcccatccc cgccgccacg ccggatgcag atacatcatg
      961 tcgacttgtg catgcagcgt cgttgagtac ttgatcggcc tgccgatgac attgatgcag
     1021 aagccgacca gactatcatc atcgtcatcc acgcgcgcgg ccaggatcag cagcaggccg
     1081 gcggcattcg cctggaaagc ctgccgccaa tcgaagtcga gcgggcactt ggcccgcagc
     1141 ggcccgactt cctttacgca ttgcttcagc agcggcgggt aatcacgaca ggtgacgatc
     1201 agctcctcga agccgtagcg gagcttgggg ctaggcttct cgtccaccga tggagtgact
     1261 acgcgcaact tcgttacggg ttggctcact gtctacgctc ccacccttgc agcccatgga
     1321 ggcatcagga accttcggct cccgatcgac catgcccttc tgatggatct tgtgatccgg
     1381 cactccactt ccgtgtgatt tccttgtcgt tggcatgcca acctcctagt tcacgtagca
     1441 ggagaagttg atgttcaccg tgttgttcaa cgccgccgcc gtggccacgt tggcgatgtt
     1501 gatggtgatg gtgccggcac cggtcaccac ctgcgcaatg gtcggcgtgc cggtcgaggt
     1561 ggtattgccg atcgtggcgg tgcaggcgtt gttggccgtg atcaagctgt tgttgatcac
     1621 gaagttggcg gcagtcgatg ccgccgtggc cagcgagttg gtggtgatga cgccgcgctg
     1681 accattgcag gtctgcggcg tgccaccgct ggccgagcag aaagcaccga tcgacggcag
     1741 cgccgttccg gtcggcgcag tgccggcggt atagagaccg gccgtaccat taagatattg
     1801 aacaaaagca ttccacgtcg ccaccgtctg gctgggctcg ttgaacggcg ccgtcgtcgg
     1861 catcgactgt atgccgccgg ccagggcggt caccgtcaat gcagcgacga aagcgagaga
     1921 tcggagcagc ttcttgagca tgagcgcctc ctatagcttg atcatcttgt agaacccgaa
     1981 atcgggagcc ccagtcggat gcccaccccc gctgcccatg ttgccaagtg acacgctgcc
     2041 agacggcgta aaggtgatcg tggcttgccc gatcgtaaca ctgccgccat ttatggctgc
     2101 aaagccggta gcactgcccg cacccaccca ataggtggag ga
//
LOCUS       DASQCV010000017         4185 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2822404, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000017 DASQCV010000000
VERSION     DASQCV010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4185
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2822404"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1528)
                     /locus_tag="VEQ16_00195"
     CDS             complement(<1..1528)
                     /locus_tag="VEQ16_00195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011631123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein"
                     /protein_id="HYP62270.1"
                     /translation="MDIPDLKQKPEISAALAGLLGNAEKLQRDAALAGFRRQLGRLQG
                     HVQQCFENDGLNGLAAARLHAGLMDELIGGLFSYALSVMPIGAQDRLSVAATGGYGRA
                     TLAPFSDIDLLFLTGETPSPAVDRAVEFVLYFLWDLGLKVGHATRSIASCLTEAKEDV
                     TIRTSLLDARCLAGDRALFVEFQTAFRAGCAADGPGEYIQAKQAERAARHRRFGDTPF
                     MVEPNVKEGRGGLRDLQTLYWLARYVFNTFAMTELVGKDAPGGGILTETEARACKRAW
                     EYLWTVRFHLHYVAGRAEERLTFDLQPVVGARMGYTRHGRQNGVERFMRHYFLVVREV
                     ARVTGVLEPALVRAALGPPAIAATTDAALIEAGFVLADGQILFAPGHDPSTDPTSVFR
                     ILIEARDRGLELHPLARRMLIRSAPLGAELRSNKQAASLFMNLLCGPNESGHDPECNS
                     ASWMAILNESGILGRYMPDWRRIVGQMQFDTYHVYTVDVHTVQCIRNLNSIERGTLKE
                     V"
     gene            complement(1572..4184)
                     /gene="mutS"
                     /locus_tag="VEQ16_00200"
     CDS             complement(1572..4184)
                     /gene="mutS"
                     /locus_tag="VEQ16_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019088368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HYP62271.1"
                     /translation="MNDATGASPAMAQWFAIKARHEDALLFFRMGDFYELFFADAQAA
                     SAALDIALTARGQHQGRPIPMCGVPVSQAEMYLARLIRRGFRVAIVEQMEDPAAAKAR
                     GAKGPLARDVVRLVTPGTLTEEALLEAGRANFLLAVAVEGSALGVAWADISTGLFETE
                     GTDAAGLGAILGRLDPAEILAPENVELGPFTVRRVGTGRLAMAVPASVEAARRELAQR
                     FGAASLDAFGEFSGAEALATSQVLAYIAATQMGASPHLSHPVSAGVAGKLAMDAATRA
                     SLELLTARGGNEAGSLLGAVKRTVSPAGARKLASWIAAPLCELEPLVARQAAWLALRD
                     AGQAELVRGTLRGTPDMARALGRIALGRASPRDLAAVKGGLEVAARLQALLPGGSKML
                     DEAIAVLDPAPDLLATLRQALAEPAPLRLEDGGAIAPGFDGELDAECRLRDDTKQVIA
                     AFQSELAQRYGVAALKIRHHAQLGYVLEAPAASVEKLRAFPELQLRQGMANGARFTHP
                     ELSELDRRITEAAARAAARERLVFGWLVKQVLAAAEALAACAEALALADVLQSAAQLA
                     LSGRFCCPELSEDAEFHIEAGRHPVVEAALPPGVGFIPNGCELSASQRLMLLTGPNMA
                     GKSTYLRQNALLVILAQAGLPVPADAMRLGLVDRLFSRVGAADDLASGRSTFMVEMIE
                     TAAILHQAGPKSFVIVDEIGRGTGTRDGLAIAQAVLESLHNQNRCRAIFATHFHELCG
                     LTEALPRLKAHTMRVKEFRGEVVFMHEVVEGAAQKSWGVHVARLAGVPETIAKRAETL
                     LKMAERNQSAMSPLPLFASAVTPVDERDEANEAFRQRLAALDPDAMTPREALDALYEL
                     RDEMCKDEGRKNGI"
BASE COUNT          752 a         1559 c         1214 g          660 t
ORIGIN      
        1 ccacttcctt gagcgtgccg cgctcgatgg agttgaggtt gcggatgcac tgcaccgtat
       61 gcacatccac cgtgtagaca tggtaggtgt cgaactgcat ctgcccgacg atgcggcgcc
      121 agtccggcat atagcggcca agtatgccgc tctcattcaa aatggccatc cagctggcgg
      181 agttacattc cgggtcgtgc ccggattcat tcggcccgca tagcaggttc atgaaaagcg
      241 aagcggcctg cttattgctg cgcagctcgg cgcccagcgg cgcggagcgg atcagcatgc
      301 gcctggcgag tggatgcaac tccagcccgc ggtcgcgcgc ctcgatgaga atgcggaaca
      361 cgctggtcgg gtcggtcgag ggatcatgcc ccggcgcgaa caagatctgc ccatccgcca
      421 gcacgaagcc cgcctcgatc agcgccgcgt cggtcgtcgc cgcgatggcc ggcgggccca
      481 gagccgcccg caccagagcc ggctccaaca ccccggtcac gcgcgccact tcgcgcacca
      541 ccaggaaata atggcgcatg aagcgctcca ccccattctg gcggccatgg cgcgtataac
      601 ccatgcgcgc gcccaccacg ggctgcaggt cgaaggtcag ccgctcctcg gcccggcccg
      661 cgacgtaatg cagatggaag cgcacggtcc aaagatattc ccaggcgcgt ttgcaggccc
      721 gtgcctcagt ctcggtaaga atcccgccgc ccggcgcatc cttgcccacc agctcggtca
      781 tggcgaaggt gttgaacaca tagcgcgcga gccaatagag cgtctgcaaa tcgcgcaggc
      841 ccccgcgccc ttccttcaca ttgggctcga ccatgaaggg cgtgtcgcca aagcggcgat
      901 gacgcgcggc gcgttcggcc tgcttggcct ggatatattc gcccggcccg tccgccgcgc
      961 agcccgcgcg gaaggcagtc tggaattcca cgaacaaagc gcggtctccg gccaggcagc
     1021 gcgcatccag cagcgaggtg cggatggtca catcctcctt cgcttccgtc aggcagctgg
     1081 cgatggagcg cgtggcatgg cccactttca gccccaggtc ccacaggaaa tacaggacaa
     1141 attccaccgc ccggtccacc gccggagacg gcgtctcgcc ggtgaggaaa agcaggtcga
     1201 tatcggagaa gggcgccaaa gtggcgcgcc catagccgcc tgtcgccgcc acgctcaaac
     1261 ggtcttgcgc accaatgggc atcacggaca gtgcataaga gaacagcccg ccgatcagct
     1321 catccatcag cccggcatgc agcctggccg cggccaggcc attcaacccg tcattctcga
     1381 aacattgctg cacatggccc tgcagccgcc ccagctggcg gcgaaacccc gccagcgcgg
     1441 catcacgctg aagcttctcc gcgttcccca gcaaaccggc cagggcggcg gaaatctcgg
     1501 gtttctgttt caaatcgggt atgtccaaga agctagatcc attcaatcat ctgggaattt
     1561 gggttgcgcg gtcaaatgcc atttttgcgc ccctcatctt tgcacatttc gtcacgcaat
     1621 tcatacagtg cgtccagcgc ctcgcgcggg gtcatggcgt ccggatcgag cgccgcgagg
     1681 cgctggcgga acgcctcatt cgcctcgtcc ctctcgtcca ccggtgtcac ggcgctggcg
     1741 aataatggta aaggagacat tgccgattgg ttgcgttcgg ccattttcag caatgtttcc
     1801 gcgcgcttag caatggtttc aggcacgcca gcaaggcgcg cgacatgcac gccccagctc
     1861 ttctgcgccg ctccctcgac cacctcgtgc atgaacacga cctctccccg gaactctttt
     1921 acccgcattg tatgggcctt taaccgcggc agagcctcgg tcagtccaca taattcatgg
     1981 aaatgtgtgg caaatatggc gcggcagcgg ttctgattat gcaggctttc cagcaccgcc
     2041 tgggcgatgg cgagcccgtc ccgcgtgccg gtgccacgcc cgatctcatc gacgatgacg
     2101 aagcttttcg gcccggcctg gtgcagaatg gcggcggtct caatcatttc caccatgaaa
     2161 gtggagcgcc cagaggccag gtcatccgcc gcgccgacgc gggagaagag ccggtccacc
     2221 agccccagcc gcatcgcatc cgccggcacc ggcagccctg cctgggcgag gatcaccagc
     2281 agcgcgttct ggcgcagata tgtggatttg ccagccatgt tcggcccggt cagcagcatc
     2341 aggcgttgcg aggcggaaag ctcgcagcca ttgggaatga agcccacccc cggtggcagt
     2401 gccgcctcca ccaccggatg ccgcccggcc tcgatatgga attccgcgtc ctcgctcagc
     2461 tccgggcagc agaaccggcc cgaaagcgcc agctgcgcgg cggattgcag cacatcggcc
     2521 agcgccagcg cctcggcgca ggcggccaaa gcttccgccg ccgccagcac ctgcttcacc
     2581 agccagccaa aaaccagccg ctcccgcgcc gccgcccttg ccgccgcctc ggtgatgcgc
     2641 cggtccagtt cggacagctc gggatgggtg aagcgcgccc cgttagccat gccctggcgc
     2701 agctgcagct caggaaacgc ccttaatttc tcgacgctcg cggcaggcgc ctcgagcaca
     2761 tagccaagct gcgcatggtg gcggattttc aaggctgcca ccccgtagcg ctgcgccagc
     2821 tcgctctgga aggcggcgat cacctgcttc gtatcatctc gcagccggca ttccgcatcc
     2881 agctcgccat cgaatcccgg cgcgatcgcc ccgccatctt ccagccgcaa cggcgccggc
     2941 tcggccaagg cttggcgcag cgtggccagc aagtccggcg ccgggtccag caccgcgatg
     3001 gcctcatcca gcattttgct cccgcctgga agcaaagcct gcagccgtgc cgccacctcc
     3061 agcccgcctt tcaccgccgc cagatcgcgc gggctggccc gccccagcgc gatccgcccg
     3121 agggcacgcg ccatatccgg cgttccccgc aatgtgccgc gcacaagctc ggcctggccc
     3181 gcatcgcgca acgccagcca cgccgcctgc cgagccacaa gcggctccaa ctcgcacaaa
     3241 ggtgccgcaa tccaggaggc cagcttgcgc gccccggccg gactcaccgt ccgcttcacc
     3301 gcccccagca ggctgcccgc ctcattgccg ccgcgggcgg tgagcagctc caaactcgcc
     3361 cgtgttgctg catccatggc cagcttcccg gccacgccgg cgctgacggg atgcgacaga
     3421 tgcgggctcg cccccatttg cgtcgccgcg atgtaggcga gcacctgcga cgttgctaaa
     3481 gcctcggccc cggaaaactc gccgaacgca tccaggctcg ccgcgccaaa acgctgcgcc
     3541 agctcgcgcc gcgccgcctc caccgaagcc ggtaccgcca tggccagccg cccggtaccc
     3601 acgcgccgta ccgtgaacgg ccccagctcc acgttctccg gggccaaaat ctccgccggg
     3661 tccagccgcc ccaaaatcgc gcccaacccc gccgcatccg tgccctcggt ctcgaacaaa
     3721 ccggtggaaa tatccgccca ggccaccccg agcgcactgc cctccacggc cacggcgagc
     3781 agaaaattcg cccgtcctgc ctccagcagc gcctcttccg tcagcgtccc cggcgtcacc
     3841 agccgcacca catcgcgcgc cagcggcccc ttggcacccc gtgccttcgc cgccgcaggg
     3901 tcctccatct gctcgacaat ggccacccgg aacccgcgcc gtatcagccg cgccagatac
     3961 atctcggcct gcgaaacagg taccccgcac atcggaatgg gccgcccctg atgttgcccc
     4021 cgcgccgtca gcgcaatgtc caaggccgca ctcgccgcct gcgcatccgc gaagaacagt
     4081 tcgtaaaaat cgcccatccg gaaaaacagc aacgcatcct catgcctcgc cttgatggcg
     4141 aaccactgcg ccatcgccgg cgatgctccc gtcgcgtcat tcatg
//
LOCUS       DASQCV010000018         2385 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1164363, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000018 DASQCV010000000
VERSION     DASQCV010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1164363"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1032)
                     /locus_tag="VEQ16_00205"
     CDS             complement(<1..1032)
                     /locus_tag="VEQ16_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HYP62272.1"
                     /translation="MSEIFNSLWPDYDPGRFFCELTAKRADAGPVPQMLAERLGRIGL
                     TDLRARADAAENDLIDLGITFTVYSDATAIDRILPFDCIPRVLTASEWDLLERACKQR
                     VAALNAFLGDIYTKGRVVKDGVIPGELVYKNSNYRPEMQDFPVPHGTYAHICGIDIIR
                     DEHGDFRVLEDNARTPSGVSYVIENRHLMLRTFPDLMAGIKLRPVDDYGRRLRAAMAE
                     VAPASGGEDPQVVLLSPGIYNSAYFEHVFLAREMGVPLVVGADLVVENDRVYMRTTAG
                     LKPVHTIYRRLNDDFLDPLVFRADSMLGVPGLIGAWKAGNVAIANAVGTGVADDKAVY
                     AYMPRVIRYY"
     gene            1446..>2385
                     /locus_tag="VEQ16_00210"
     CDS             1446..>2385
                     /locus_tag="VEQ16_00210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HYP62273.1"
                     /translation="MHRLASACDEMIDRHGRIRAPWSPIMAASREIGHEELNRRAVAL
                     NRQMGLAAPINGTPKRYYDPLPVLLTSDEFTFLEAALKQRAGLLNHVLEDLYGPQHLL
                     RSGAIPPALVLGEPHFLRPLHTQTPLPAPRFALYAADIVRGPDGNFSLLRDHTGIIPG
                     LGHALSLRRLAAGTLPELFRAGGIRSLRPARDMLIDHVRREAEGGLVAVLSGGGSVPD
                     ADTLDDALLARALGILLIEPGDLAARNGSLHMKTLSGLLSVSALIRGVSGIDLDPLEQ
                     GGRPGRGIAGAFGAIRAGVLTMLNAPGSNLVTAPALH"
BASE COUNT          457 a          798 c          712 g          418 t
ORIGIN      
        1 gtaatagcgg atgaccctcg gcatataggc gtagaccgcc ttgtcgtcgg cgacacctgt
       61 acccaccgcg ttggcgatgg cgacattgcc cgccttccag gccccaatga gccccggcac
      121 gccgagcata gagtcagcac ggaacaccag cggatcgaga aaatcgtcat tgagccggcg
      181 atagatggta tgcaccggct tcagcccggc ggtggtgcgc atatagacgc ggtcattctc
      241 caccacgaga tcggcgccaa cgacgagcgg cacgcccatc tcgcgcgcca ggaacacatg
      301 ctcgaaatag gcggagttat agatgccagg cgagagcagc accacttgcg ggtcctcgcc
      361 gccgctggcg ggcgccacct cggccatggc ggcgcgcagg cgtcggccat aatcatccac
      421 cgggcgcaat tttatccccg ccatcaggtc ggggaaggtg cggagcatca gatgacggtt
      481 ctcaatcacg taggaaacgc ctgaaggcgt gcgggcatta tcctccagca cgcggaaatc
      541 gccatgctcg tcgcggatga tgtcgatacc gcaaatatgc gcataggtgc cgtgcggcac
      601 aggaaaatcc tgcatttccg gacggtaatt gctattcttg tagaccagct caccaggaat
      661 cacgccatcc ttcaccaccc gccccttggt gtagatgtcg cccaggaaag cattcagcgc
      721 cgccacgcgc tgcttgcagg cgcgctcgag caaatcccat tccgaagccg tcaacacgcg
      781 cgggatgcag tcgaagggca gaatacggtc gatggcggtg gcatcggaat aaactgtgaa
      841 agtgatgccg agatcgatca gatcattctc cgccgcatcg gcacgggcac gcaaatcagt
      901 caggccgata cggcccaggc gctcggccag catctgcggc accggcccgg catcggcgcg
      961 cttggccgtc aactcgcaga agaagcgccc gggatcatag tctggccaga ggctgttaaa
     1021 aatctcgctc actgcagacc ctccggttga attttctcac gcacggccag ccggcagagc
     1081 cggtggcggc aagtatgata tgctgaaatt cgcgccaata gtgtagagat tgctgaaatt
     1141 cgcgccgccg gcgagcagat tactgaagtg cgcgccgccg gcgcgcggga catgcggagt
     1201 tccaggctcg tcccaatggt cttcattcaa ccatgaccca ttcttgccac cgattcgtca
     1261 tgtatttcac caagctgccc ccaaatccgg ttgccctgca agccctgtta tgcgggctct
     1321 ccaaaaggga gcatgcaagc aacggaccag ccttacgctc gatcaatttg ctctgggcaa
     1381 ttttgcgccg gggaacaagg ctttcgcggt aggcactcgc gccgccgtct gttaagcctc
     1441 ctgcaatgca tagattagct tccgcctgcg atgagatgat cgaccggcac gggcggattc
     1501 gtgcgccctg gtcgcccatc atggcggcat cacgcgaaat tgggcacgaa gaactcaacc
     1561 gccgcgccgt ggcgctcaac cggcagatgg ggctagccgc cccgatcaac ggcacgccca
     1621 agcgttatta cgacccgctg cccgtgctgc tcacttccga cgaattcacc ttcctcgaag
     1681 ccgcgctgaa gcagcgcgcc gggctgctga accatgtgct ggaagatttg tacgggccgc
     1741 agcacctgct gcgctccggc gccatcccgc ccgccctggt actgggagag ccgcatttcc
     1801 tgcgcccgct gcatacgcaa acgccactcc ccgccccgcg cttcgccctc tacgccgccg
     1861 acatagtgcg cgggccggac ggcaattttt cgctcctgcg cgaccatacg ggcatcatcc
     1921 ccggccttgg ccatgcctta agcctgcgcc gcctcgctgc cggcaccctg ccggaattgt
     1981 ttcgcgctgg cggcatacgc tccctgcgcc cggcgcgcga tatgctgata gaccatgtgc
     2041 ggcgcgaggc cgaaggcggg ctggtggccg tgctttctgg cggcggtagc gtgccggacg
     2101 ccgacacgct ggatgacgcg ctgctggcac gcgcgctcgg catattgctg atcgagcccg
     2161 gcgacctcgc cgcgcgcaac ggcagcctgc atatgaaaac cctgagcggg ctgctcagcg
     2221 tctccgccct catacgcggc gtctcgggca tcgatttaga cccgctggaa caaggcggca
     2281 ggcccggcag gggtattgcc ggcgcgttcg gcgccatccg cgcgggcgtg ctgaccatgc
     2341 tgaacgcacc tggcagcaat ctggtcaccg cccccgccct gcacc
//
LOCUS       DASQCV010000019         1715 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_998997, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000019 DASQCV010000000
VERSION     DASQCV010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_998997"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            36..>1715
                     /locus_tag="VEQ16_00215"
     CDS             36..>1715
                     /locus_tag="VEQ16_00215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62274.1"
                     /translation="METLEDRLQLGETVLGVLTGLTLLESLAPAPELSELPALVSPRP
                     LPVTSPGLLDSYSAAAPQSGAIYEIVNHADSPNPTPGGDTADFWPSAGQASPAFWRAS
                     GPLGAARQDPFFLSMVPFTGSAGPAAFSAPVQAFPPTFSRTDAPGALRDSASGTDFAT
                     LTDSTPLAFDIGTGQLGIHRDANDHTVRTTINAAGFLEVTRAGQLHSSDPASAGFDRA
                     LAGAMAANLRAVRFDGGAEDQLAVSASCLPGAFVVRAGAAEVIAGAVTAAGAVSIQAP
                     KVTVTGAVHAPAVSLNATGWVVIEATGEVSTGRDGTGGQIAIVADKFVNSGRVHADGA
                     AGGQIQLHAGNILNGGPISADGTQSGPGGSVQVSFTGVYIGTVAGLTSANSQPEPGAS
                     APGVGGTVIINGGATGRLFSSGKHEATGATGGEVDLLGREIVLPGASIDTSGNNGGGL
                     VHIGGDFHGGTVGASLQLARSQGQVTNLPHNASTVTVTSATTIHADAWQNGDGGRVAV
                     WSEEGTDFSGTASARGGITGGAGGFIEVSSKGKLNFAGSGDAGAPRGQAGKL"
BASE COUNT          289 a          599 c          525 g          302 t
ORIGIN      
        1 aacttcgttc actggcgctc caacaccgtc cccgcgtgga aaccctggag gatcggctcc
       61 aactcggcga aaccgtcctg ggcgtgctca ccgggctgac attactcgaa tcgctcgcgc
      121 cggcgcccga actttccgaa ctccccgcgc tcgtatcccc gcggcctctt ccagttacat
      181 cgcccgggtt gctcgattcc tattcggcag ctgcaccgca atcgggcgcc atttacgaaa
      241 tagttaacca cgcggattca ccaaacccaa cgcctggcgg cgacaccgcg gacttttggc
      301 catccgccgg acaggcatcc cctgcctttt ggcgcgcctc aggtccgctc ggcgcagcca
      361 gacaggaccc cttcttttta tcgatggtgc catttaccgg ctcggccggc ccggcggctt
      421 tttccgcgcc ggtccaggca ttccctccca ccttttcccg gacggatgcg cccggcgctt
      481 tgagggactc ggcctcaggt accgattttg ctactctgac agattccacc cctctggcgt
      541 ttgacatcgg caccggtcaa ctcgggattc accgggatgc caatgaccat accgtacgta
      601 cgacgatcaa cgccgccggc ttcctggagg tgactcgcgc gggccaattg cactcgagcg
      661 acccggcctc cgccggcttc gaccgcgcac ttgcgggcgc catggccgcc aacttgcgtg
      721 cagtccgctt cgacggcgga gcggaagacc agctcgccgt ttccgcttcc tgtcttcccg
      781 gcgcattcgt cgtccgcgcc ggtgctgcgg aagtgatcgc gggggctgtg accgctgccg
      841 gagccgtgtc gatccaagcc ccaaaggtca cggtgaccgg cgccgtgcac gcccccgcgg
      901 tctcgctcaa tgcaaccggg tgggttgtga ttgaggcaac cggcgaagtg tccaccggcc
      961 gggatgggac cggcggccaa atcgcgattg tcgccgacaa atttgtaaac agcggccgcg
     1021 tgcacgccga tggcgctgcc ggcggtcaaa tccagcttca cgccggcaac atcctcaacg
     1081 gcgggcccat ctccgccgat ggcacgcaat cgggccccgg cggcagcgtg caggttagct
     1141 tcaccggcgt ctatatcggc acggtcgctg gcctgacctc ggccaacagc caacccgagc
     1201 cgggggcgtc agcccccgga gtcggcggca ccgtaatcat caacggcggc gccacaggcc
     1261 ggctgttcag cagcggcaag cacgaagcca ccggcgctac tggcggcgag gtggacctcc
     1321 ttggccgcga aatcgtgcta cccggggcat ccatcgatac ctccggaaat aatggcggtg
     1381 gcctcgtgca catcggcggc gattttcatg gcggcactgt gggggcaagt ttgcaacttg
     1441 cccgttccca agggcaagtt acaaacttac cccacaacgc ctccacggtc accgtgacct
     1501 ccgccaccac cattcacgcc gacgcctggc agaatggcga cggcggccgg gtggccgtct
     1561 ggtcggagga ggggaccgac ttttcgggga cggcgtccgc ccggggagga attaccggag
     1621 gtgcgggcgg cttcatcgaa gtttcctcga aaggcaaatt gaacttcgcg ggttccggcg
     1681 atgccggagc gccacggggg caagccggca aattg
//
LOCUS       DASQCV010000020         2500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2823080, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000020 DASQCV010000000
VERSION     DASQCV010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2823080"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            225..866
                     /locus_tag="VEQ16_00220"
     CDS             225..866
                     /locus_tag="VEQ16_00220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011389141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HYP62275.1"
                     /translation="MSTPPSERARVKRYNHIASYDRDTVHAILDAMPLCHVGYVFKGS
                     PYVTPTLQWRDGDRIFWHGSSASRMLESAEAHDVCVTVSLYDGLVMARSAYNYNINHR
                     SVMIFGKPEKLANEEKEAQLRNFVNKTIPGQWERLRPVLPKELKATTVLTMPITEASA
                     KLRDGHTDDDDDADFPVWTGIIPVRYEIGAPIANPKNLPGVEMPEEALQFKIG"
     gene            complement(932..>2500)
                     /gene="mutL"
                     /locus_tag="VEQ16_00225"
     CDS             complement(932..>2500)
                     /gene="mutL"
                     /locus_tag="VEQ16_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004448937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HYP62276.1"
                     /translation="ELALALERHATSKLADETLVRIATLGFRGEALPSIGAAAKLTLI
                     SRPAGQDSAYRVHVAGGAIGDVAPAPGVKGTRAIVEDLFYATPARRKFLRSPRAEGEA
                     AEKAVWRLALAAPQAAFRLVADERVIFDLPAQDEPARVAALFGRETASSLLPLQAERD
                     GVTLTGLIGPASLSRATMALQSFVVNGRPVADPLLRLALRLAYRDVVPAGRHAVAALR
                     LTVPDEALDVNVHPAKTELRFADGNGVRSLVIGAIGRALERPVSLASAPVAMPALALR
                     PPSSASWSSPAPPSPAARGFAETELALAAPRATRVFTQPAPLPEAAAIPAPEHPLGAP
                     IAQILDTYILAAAPDGALVLVDQHAAHERLTEERLRDEFLSGRIAAQPLLVPVVVDFS
                     PSEAARLLAEAETLTKLGLEIEAFGPGAILVRAVPAALKNPDAAGLLRDLAEEFAESD
                     APLALEARLDAALARLACHRSIRAGRRLQREEMEALLREMEATPRAATCSHGRPTFLR
                     LTRAELEKMFGRRT"
BASE COUNT          498 a          833 c          781 g          388 t
ORIGIN      
        1 atcctcggcc agcaatgcca ccatggcaga ggcatcaccc gcgttgaagg catcgtaata
       61 ggcagtgatc agcgttttgg cggtttcgtt catgatcggc gttcctgtca tcggctggcg
      121 aacaaaaata tcttataaat aaacaagttt tcttgacaat tacctttccg cttggtcatc
      181 tgaatggcga gcctcagccg caaaccacag cctcaggaga agtcatgtcc accccgccca
      241 gtgagcgcgc ccgggtcaag cgctataacc atatcgcctc ctatgaccgc gacaccgtcc
      301 atgcgattct cgacgccatg ccgctttgcc atgtcggcta cgtcttcaaa ggcagcccct
      361 atgtcacccc cactttgcaa tggcgcgatg gtgaccgcat tttctggcac ggctcctccg
      421 ccagccgtat gctggaaagc gcggaagccc atgatgtgtg tgtcacggtc agcctctatg
      481 atgggctggt gatggcgcgc tcagcctata actacaacat caaccatcgc tccgtgatga
      541 ttttcggcaa accggaaaag ctggcgaatg aggagaaaga ggcgcaactg cgcaatttcg
      601 tcaacaaaac cattcccggc cagtgggagc gcctgcgccc cgtgctgccg aaggagctga
      661 aggcgaccac cgtgctgacc atgcccatca ccgaagccag cgccaaattg cgcgacggcc
      721 atactgatga tgacgacgat gcggatttcc ctgtctggac cggcatcatt cccgtccgtt
      781 acgaaatcgg cgcgcccatc gccaacccga aaaacctgcc gggcgtggaa atgccggaag
      841 aagcgttgca gttcaaaatc ggctaagggc aataaagctg tggcccggtc ctgaggatcg
      901 atccacagcc ctcaaattgc gcgccggaat tttaagttcg gcgtccgaac attttctcca
      961 gctcggcacg cgtgaggcgc agaaacgtgg ggcggccatg gctgcaggtg gcggcgcgcg
     1021 gggtggcttc catctcgcgc agcagcgcct ccatttcctc gcgctgcaac cgccgcccgg
     1081 cgcggatgga gcgatggcag gcgagccgcg ccagggccgc gtccagccgc gcctccagcg
     1141 ccagcggcgc atcggattcg gcgaattcct cggccaggtc gcgcaacagc ccggcagcgt
     1201 cagggttttt cagcgccgca ggtacggcgc gcaccagaat cgcgccaggg ccgaaagctt
     1261 cgatctccag ccccagtttc gtcaacgtct ccgcctcggc cagcaggcgc gccgcctcgc
     1321 tgggcgaaaa atccaccacc accggcacca gcaaaggctg cgcggcgatg cggccggata
     1381 aaaattcgtc acgcaaccgt tcctcggtga ggcgctcatg cgccgcatgc tggtcaacca
     1441 gcaccagcgc cccatccggg gcggcggcaa ggatgtaagt gtcgagaatc tgcgcaatgg
     1501 gggcgccgag cggatgctcc ggcgccggta tggcagcggc ctcgggcaat ggcgccggct
     1561 gggtgaaaac gcgcgtggcg cgtggcgcgg ccagagccaa ttccgtctcg gcaaaaccac
     1621 gcgcagccgg gctgggcgga gccggggagg accatgaggc actggacggc gggcgcagtg
     1681 ccaaggcggg catggccaca ggcgcgctgg ccagcgaaac gggccgctcc agcgcccggc
     1741 cgatggcgcc gatgaccagg ctgcgcacgc cattgccatc ggcaaagcgc aattccgtct
     1801 tggccgggtg cacattcaca tccagcgcct catccggcac ggtgaggcgc aaagccgcca
     1861 cggcatggcg tcccgccggc accacgtcac gataggccag acgcaacgcc aggcgcagca
     1921 gcggatcagc caccgggcgg ccattcacca cgaaactctg caacgccatg gtggcgcgcg
     1981 acaggctggc cgggccgatg aggccagtaa gtgtgacgcc atcgcgctcc gcttgcagag
     2041 gcagcagcga agaagccgtc tcgcgcccga acaaggcagc aacgcgggca ggctcatctt
     2101 gcgccgggag atcaaaaatc acgcgctcat cggcgacgag gcggaacgcg gcctgcggcg
     2161 ccgccagtgc cagacgccag accgcttttt ccgccgcttc gccctcggcg cgcgggctgc
     2221 gcaaaaattt acgccgtgca ggggtggcgt agaacagatc ctcgacaatg gcgcgggtgc
     2281 ccttcacccc cggcgccggg gctacatccc caatagcgcc gcccgccaca tgcacgcggt
     2341 aggcggaatc ctgccccgcc gggcggctga tgagagtgag ctttgccgcc gccccaatgg
     2401 agggcaaagc ctcgccgcgg aaaccgagcg tggcgatgcg caccagcgtc tcgtcggcaa
     2461 gcttggaggt cgcatgacgc tccagcgcga gcgccagctc
//
LOCUS       DASQCV010000021         8374 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_667417, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000021 DASQCV010000000
VERSION     DASQCV010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 8374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8374
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_667417"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..442
                     /locus_tag="VEQ16_00230"
     CDS             <1..442
                     /locus_tag="VEQ16_00230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010515002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase fold domain-containing
                     protein"
                     /protein_id="HYP62277.1"
                     /translation="LLARDRGGPKLAFQHLIYPMLDDRTCTAEDPHPFTGEFVWTAVQ
                     NRYGWGALLGQAPGGAGISPYAAAGRAEDLSGLPPSFIAVGALDLFLEEDLDYARRLT
                     RAGVPVELHVYPGAYHGFHFAGDAAVTRAANRDSLEALRRGLAG"
     gene            complement(459..2057)
                     /locus_tag="VEQ16_00235"
     CDS             complement(459..2057)
                     /locus_tag="VEQ16_00235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019089859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HYP62278.1"
                     /translation="MPGPEAGAMPAHAAKDLDAGTGRVFLAVFGVILLVGLIYTAVSL
                     GKDLSSVRSPGTLPYILLGIALTIALGFEFINGFHDTANAVATVIYTNTMPANLSVIW
                     SGFFNFLGVLTSTGGVAFTIVSLLPVELILQVGSASGFAMVFALLVAACIWNLGTWYI
                     GIPNSSSHTLVGSILGVGFANQLINGASGTSGVDWTQVSKVFEALLFSPLAGFILASL
                     LMLILRVTLFRFPALFRTPEGNKPPPLLVRALLVLTCTGVSFSHGANDGQKGMGLIML
                     ILIGTVPTVYALNGAVTSNQIASFHQSSQAAISTLHSLSDNAAAPDNAKAAITVAVQK
                     RALQPDTLPALASLLGDIDRQIVNRPSLRDIPPAQVGNVRNDLYLADTALAMVLKKVP
                     MEAGQKAALKGWQADATHATQFIPVWVKVVVALALGMGTMVGWKRIVRTVGEKIGKTH
                     MTYAQGLSAEVVAMGLIQAATAWHLPVSTTHVLTSGVAGTMAANGSGLQWGTIRNLAA
                     AWVFTLPASILIAGVLFWIFRATF"
     gene            complement(2169..3575)
                     /gene="dnaA"
                     /locus_tag="VEQ16_00240"
     CDS             complement(2169..3575)
                     /gene="dnaA"
                     /locus_tag="VEQ16_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014104004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HYP62279.1"
                     /translation="MREGDALLKSHALRTEEPGMTEQWARVRARLQAEVGDVEYRTWL
                     KQVTFSGMAGDEVTVVLPTRFLRDWVNKEYGELITALWQAENPAVRRVEFRTAATARA
                     AAPNLAEPASGPVAVPAAVRPESAAALDQRFTFETFVVGKPNEFAYACARRVAEAPAT
                     AGFNPLFLYGGVGLGKTHLMHAIAWELSNRPQGGRPVTVAYMSAEKFMYRFINALRSQ
                     STLEFKNELRSVDVLMIDDLQFLIGKDNTQEEFFHTFNALVDAGKQIVISADKSPSDL
                     SGLEDRLRTRLGCGMVADLHATTFELRYSILEAKAARAGVEVPAKVLEFLARKITSNN
                     RELEGALNRLVAHANLFSRPLTMETAHEVLHDVLKAHDRKVSIQEIQKRVAEHFNIRV
                     AEMSSARRARNIARPRQVAMYLAKQLTSKSLPDIGRHFGDRDHTTVMHAVSRVTELIG
                     QDAAFAEDVDLLRRMLET"
     gene            complement(3999..4268)
                     /gene="rpsT"
                     /locus_tag="VEQ16_00245"
     CDS             complement(3999..4268)
                     /gene="rpsT"
                     /locus_tag="VEQ16_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011253998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HYP62280.1"
                     /translation="MANIASAEKRIRQTAKRTARNKARKSRVHTAIRKVEEAVAAGDK
                     TAAQAAFQAAQPELQRAVGKGVLKLNTVSRKLSRLSARVKAVAVA"
     gene            4261..4464
                     /locus_tag="VEQ16_00250"
     CDS             4261..4464
                     /locus_tag="VEQ16_00250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62281.1"
                     /translation="MAMVSKNKVFEEARGLAGRAEKVKHYGRMEPLGKRLLVSRLRVF
                     GEHRSKEKHPHAAASKRFPAIRG"
     gene            complement(4451..4810)
                     /locus_tag="VEQ16_00255"
     CDS             complement(4451..4810)
                     /locus_tag="VEQ16_00255"
                     /inference="COORDINATES: protein motif:HMM:NF017690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYP62282.1"
                     /translation="MSRLHPLPATADAPWDDVPWEDVPAEKRLAGAPRIRTVLLYESP
                     AEKLYAGEWEATAGKWRISYSEWEYMEIISGACVVEGDDGTRIEAGPGTRFVIEPGFT
                     GTWEVLAPMRKSWVIRE"
     gene            complement(4807..5565)
                     /locus_tag="VEQ16_00260"
     CDS             complement(4807..5565)
                     /locus_tag="VEQ16_00260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62283.1"
                     /translation="MKKILRLLPALALAGCSSSPPAQNFAPLDYSYLRPIIFKVTTLN
                     VVNNYTPGTDEQPLIASNPAPPAATLMAMLQNRMQPSGQPGSGTITVQQASITEAGGN
                     LSGQMTVDLNLTSADGHSTGFAEASVSRSETAPNDDPTSPDMKAALYQMTKDLMTAIN
                     VELPYQIAHNIPNWVSWTSPAGAAGGLPAAGGGAAPGTIQSSPLGAPGAATGTAPVPA
                     ASAPTPLSAPVNSNSAVPNYLPGAGPAALGTTPP"
     gene            complement(5577..6539)
                     /locus_tag="VEQ16_00265"
     CDS             complement(5577..6539)
                     /locus_tag="VEQ16_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HYP62284.1"
                     /translation="MTELPAFLDSSRPHVPDLSVPRGITPFYLPDQPVRGRLVRLGPL
                     AATLLSRHEHATPVKALLGEALALAAALASALKFKGSFSVQARGDGPVPMLLADCTDS
                     GALRGYARTTEEAEILDDADAGAMLGSGYLAFTVDFGLEHDPQQGIVALQGGSLAAMA
                     EYYFAQSEQLPARVFLAAGETPSGWRASALVLERVAGAGGIAPDMSADMQEEAWRTAC
                     ILAETITAGELLDDSLSPERLLYRLFHGEGVAVAKPRPLSYGCRCSRARLSGILEGFC
                     TDDLDHMAVDGDIVMTCEFCNFDFRFPRDTITGRPDHKAPDHKA"
     gene            6606..8066
                     /gene="rfaE1"
                     /locus_tag="VEQ16_00270"
     CDS             6606..8066
                     /gene="rfaE1"
                     /locus_tag="VEQ16_00270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HYP62285.1"
                     /translation="MTADTPADLGQYVKRLNRASVLVVGDAMLDRYVYGEVNRVSPEA
                     PVPILTVTREVAMPGGAGNVVRNLIALDAAAAFVSVVGDDQAGSDLTGLVGGQERVEP
                     WLLVHGGRTTTLKTRYIAQGQHLIRADREETVELPPKLAERLVRIALDAMAATSVTVL
                     SDYRKGVLSEPVCRALIEGAKTLGRRVIVDPKGRDWSRYRGADVVTPNRKELHEATGL
                     AVDNEAGVVAAAQVILQRHEFGAVLVTRAEDGMTLVTASDVRHYPAEAREVFDVSGAG
                     DTVVAALAAALAAEVPLAEAARLANIAGGIVVGKVGTAVARPADILAALAPATGALQK
                     VVTPAAAAEAAERWRLRGYKVGFTNGCFDLLHPGHVHLLEQCRAMCDRLVVGINSDAS
                     VKRLKGPTRPAQTEAARAAVLASLASVDQVCLFEEDTPIELIKQIKPDVLIKGADYTR
                     ETVVGADLVESWGGSVALAELLPGHSTTATLARLRG"
     gene            8099..>8374
                     /locus_tag="VEQ16_00275"
     CDS             8099..>8374
                     /locus_tag="VEQ16_00275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP62286.1"
                     /translation="MTLPLGPEVDSFPRPLPAREKILGNRVSLEPLQRRHGAELFEAA
                     RGADESFAYMSYGPFGARPQIDGFIAQHASLTHAAFWAVRPVTTGRAS"
BASE COUNT         1506 a         2475 c         2953 g         1440 t
ORIGIN      
        1 gctcctggcg cgggaccgcg gcgggccgaa gctggcgttc cagcatctca tttatcccat
       61 gctcgatgac cgcacctgca cggcggagga cccgcatcct tttaccggcg aatttgtgtg
      121 gacagcggtg cagaaccgct atggctgggg ggcgctgctc ggccaagcgc cgggcggagc
      181 aggaatatcg ccttatgcgg cggcggggcg ggcggaggat ttgtcggggt tgccgccttc
      241 tttcattgcc gtgggcgcgc tggatttgtt tctggaggaa gacctcgact atgcgcggcg
      301 gctgacgcgg gccggggtgc cggtggagtt gcatgtctat ccgggggcgt atcacgggtt
      361 tcatttcgcg ggagatgcgg cggtgacgcg ggcggcgaac cgggatagtt tggaggcgtt
      421 gcggcggggt ttggcggggt aggctgagcg ctaaactcct agaatgtcgc gcggaaaatc
      481 cagaacagca caccggcaat caggatcgag gctggcaggg tgaacaccca ggccgcggcg
      541 agattacgga tcgtgcccca ttgcagcccc gaaccgttcg ccgccatcgt gcccgcgacg
      601 ccggaggtga gcacatgcgt cgtgctgacc ggaagatgcc aggccgtggc cgcctggatc
      661 agccccatcg ccaccacctc cgccgagagg ccctgcgcgt aggtcatgtg cgtcttgccg
      721 attttctcgc ccaccgtgcg gacaatccgc ttccacccca ccatcgtgcc catgccgagt
      781 gccagcgcca ccaccacctt cacccatacg ggaatgaatt gcgtggcatg agtggcatcc
      841 gcttgccagc ccttcagtgc cgccttctgc ccggcctcca tgggcacttt cttcaacacc
      901 atcgccagcg ccgtgtcggc cagatacaga tcgttgcgca catttcccac ctgcgcgggc
      961 ggaatgtccc tgagcgatgg ccggttgacg atctgccggt cgatatcgcc cagcagcgac
     1021 gccagcgcgg gcagcgtgtc cggctgcaac gccctttttt gcaccgcgac ggttatcgcc
     1081 gccttggcat tatccggtgc cgccgcgttg tcagagaggc tgtgcagcgt gctgatcgcg
     1141 gcctggctcg actggtggaa tgaggcgatc tggttgctgg tgacggcgcc gttcagcgca
     1201 tagaccgtcg gcaccgtgcc gatgaggatc agcatgatga ggcccatgcc cttctgccca
     1261 tcattcgcgc catggctgaa ggagacgccg gtgcaagtga gaaccagtaa ggctcgaaca
     1321 agcaaaggcg gcggcttgtt gccttccggc gtgcggaaca aagccggaaa gcggaacaag
     1381 gtgacacgca gaatgagcat cagcaggctg gccaggatga agccggcgag cggcgagaac
     1441 agcagcgcct cgaacacctt cgacacctgc gtccaatcca cgccgctggt gccggacgcg
     1501 ccgttgatga gctggttggc gaagccgacg ccaaggatgg agccgaccag cgtgtgcgag
     1561 gaggaattgg ggatgccgat ataccaggtg ccgagattcc agatgcaggc cgccaccagc
     1621 agcgcgaaca ccatggcgaa accggaggcg ctgccgacct ggagaatcag ctccaccggc
     1681 agcagcgaga cgatggtgaa ggcgacgcca cccgtggagg tgagcacgcc gagaaaattg
     1741 aaaaaaccgg accagatgac ggaaagattg gccggcatgg tattggtgta gatgaccgtc
     1801 gccaccgcat tggcggtgtc gtgaaacccg ttgatgaatt cgaagccaag cgcgatggtg
     1861 agcgcgatgc caagcaaaat gtaaggcagc gtgccggggc tgcgcacgct cgacagatcc
     1921 ttgcccaggc tgacggcggt atagatcagc ccgacgagaa ggatgacacc aaataccgcg
     1981 aggaaaacgc gtccggttcc ggcatctaga tccttggcgg catgcgccgg catcgcgcca
     2041 gcctcggggc ccggcatatg cttctcccga tccagtatgt tccggctacg ggaggtacat
     2101 aatggccatg gggtgtagcg ggcatagcgc catcattaca aatcggaacg gccaaagccc
     2161 gccccgcttt atgtctcgag catacgccgc agcaaatcga catcttcggc gaaagccgcg
     2221 tcctggccga tgagctcggt cacacgggag acggcgtgca tgactgtggt atggtcgcgg
     2281 tcgccgaaat ggcggccgat atcgggcagg gatttgctgg tgagctgctt ggccaggtac
     2341 atggcgacct ggcgcgggcg ggcgatgttg cgggcgcggc gggcggagga catctccgcc
     2401 acgcggatat tgaaatgttc cgccacgcgt ttctggattt cctggatgga aaccttgcgg
     2461 tcatgcgcct tgagcacgtc gtgcagcact tcatgcgcgg tttccatagt gagggggcgc
     2521 gagaagagat tggcgtgggc gacgaggcgg ttgagcgcgc cttcgagctc gcggttgttg
     2581 gacgtgatct tgcgggcgag gaattccagc actttcgcgg gaacttcgac accggcgcgg
     2641 gcggccttgg cttccaggat ggagtagcgc agctcgaagg tggtggcgtg caaatcggcg
     2701 accatgccgc agccgaggcg cgtgcgcaga cggtcttcga ggccggagag gtcggaaggg
     2761 gatttgtcgg cggagatgac gatctgcttg ccggcatcga ccagagcgtt aaaggtgtgg
     2821 aaaaattcct cttgcgtatt gtccttgccg atgaggaatt gcaggtcgtc gatcatcagc
     2881 acgtccacgc tgcgcagctc gttcttgaat tcgagcgtgg attgcgagcg cagcgcgttg
     2941 atgaagcggt acatgaattt ttccgccgac atataggcga cggtgacggg cctgccgcct
     3001 tgcgggcggt tggagagctc ccaggcgatg gcgtgcatga gatgggtctt gcccagcccg
     3061 acgccgccat agaggaagag cgggttgaag ccggcggtgg ccggggcctc cgccacgcgg
     3121 cgggcgcagg cataggcgaa ttcgttgggc ttgccgacga cgaaggtctc gaaggtgaag
     3181 cgctggtcga gcgcggcagc actttccggg cgcaccgcgg cgggcaccgc gaccgggccg
     3241 ctggcgggct cggcgagatt gggggcggcg gcgcgcgcgg tggcggccgt acggaactcc
     3301 acgcgccgca cggcggggtt ctcggcctgc cacagggcgg taatcaactc gccatattct
     3361 ttgttcaccc agtcgcgcag aaagcgcgtt ggcagaacga ccgtgacttc gtcgcccgcc
     3421 atgcctgaaa aggtgacctg cttgagccag gtgcgatatt cgacatcgcc cacctcggcc
     3481 tgcagccggg cgcgcacccg ggcccattgc tcggtcatcc ctggctcctc tgtccgcagc
     3541 gcgtgagatt taagcaaagc gtcgccctcg cgcatggaac tgatctccag gctcatccta
     3601 accaccccgc tccccccggc caaccctaca acctacactc ggcgcacagc ttccccgtca
     3661 agaaaaagcc gctggagggc ctttactttc tcagaaaaga gacaacaatc gaaggtatct
     3721 tgaggctctg acagtaaggc gaaaaggcta ccctgtgcaa gcgctgaaat gagtccgcgt
     3781 tggcaggcaa gttgctgttt cgccatgaaa aagtataaaa gtcagatagt tagtttagaa
     3841 gccctcttga aacagaaagt ttaaattgcg ctgctgtaat ataaaaacca tgcgcggaaa
     3901 cgcaccgctg ccatttctgt gttacgacag aatgacaacg gggcgaaaca tgtctcgttt
     3961 tttcaaactg agggttacaa cgccaggtag gcgttgtatt acgcgacggc gacagccttc
     4021 acgcgtgcgg acaggcggga gagcttgcgc gacacggtgt tgagcttcag cacgcccttg
     4081 ccgacggcgc gctgcagctc gggctgcgcg gcctggaagg cggcctgggc ggctgtcttg
     4141 tcaccagcgg cgacggcctc ctccaccttg cggatggcgg tgtggacgcg agacttgcgc
     4201 gccttgttgc gcgccgtgcg cttggcggtc tgacggatgc gtttctcagc agatgcgata
     4261 ttggccatgg tgtccaaaaa caaagtgttc gaagaagcgc gcggtctagc cggacgcgcg
     4321 gagaaggtca agcactatgg gcgcatggag ccattaggga aacgcttgct ggtgagtcga
     4381 ttgcgggtgt ttggcgagca ccggagcaaa gaaaaacacc cgcacgcggc cgcaagcaag
     4441 cgtttcccgg ctattcgcgg atgacccagg atttgcgcat gggcgcaaga acctcccagg
     4501 tgcccgtgaa accaggctct atgacaaagc gcgtgccagg gccggcctcg atgcgggtgc
     4561 cgtcatcgcc ttccacgacg caggcgccgg agatgatctc catatattcc cattcgctat
     4621 aggagatgcg ccatttgccc gctgtggcct cccattctcc ggcatagagt ttctcggcgg
     4681 gagactcgta gagcagaacg gtacggatgc gcggggcgcc tgccaggcgt ttttccgccg
     4741 gtacatcttc ccagggcaca tcgtcccagg gcgcgtctgc agtggcgggg agcggatgca
     4801 gccggctcat ggcggcgtgg tgccgagggc ggcggggccg gcgccgggca ggtaattagg
     4861 taccgcgctg ttgctattaa caggcgcgga caagggcgtt ggagcgctcg ccgccgggac
     4921 gggggccgtg cccgtagcgg cgccgggggc gcccagcggg ctggattgta tggtgcccgg
     4981 cgcggcgccg ccacccgcgg cagggaggcc gcccgcagcc ccggcgggtg aagtccagga
     5041 cacccagttc gggatgttat gggcgatctg gtagggcagc tcgacattga tcgcggtcat
     5101 cagatccttt gtcatctgat ataaggccgc cttcatatcc ggcgaggtgg gatcgtcgtt
     5161 cggcgcggtc tcgctgcgcg agacagaagc ctcggcaaag ccggtggaat ggccatcggc
     5221 gctggtgagg ttgagatcca ccgtcatctg accgctgaga ttgccacctg cctcggtgat
     5281 gctggcctgc tgcacggtga tggtgccgga gccgggctgg ccggagggct gcatgcggtt
     5341 ctgcagcatc gccatcagcg tggcggccgg aggcgcgggg ttgctggcga tgagaggctg
     5401 ctcatcggtg ccgggggtgt agttgttcac cacattcagc gtggtgacct tgaagataat
     5461 gggccgcaga taggaataat cgagcggcgc gaagttctgc gccggcggcg aggaagagca
     5521 gcccgccagg gccaaagcgg gaagcaggcg caggattttc ttcatgtggt tttgtctcat
     5581 gccttatggt cgggtgcctt atggtcgggc cggccggtaa tggtatcgcg cgggaaacgg
     5641 aaatcgaaat tgcagaactc gcaggtcatc acgatgtccc catcgaccgc catgtggtcg
     5701 agatcgtcgg tgcagaaacc ttcgagaatg ccggagaggc gggcgcgcga acagcggcag
     5761 ccatagctta aaggacgcgg cttggcgacc gccacgccct cgccatggaa caagcggtag
     5821 agcaggcgct caggactcag gctgtcatcg agcagttccc cggccgtaat ggtctcggcc
     5881 aggatgcagg cggtgcgcca ggcttcctcc tgcatgtccg cggacatgtc cggagcgatg
     5941 ccgccggccc cggccacacg ctccagcacc aaagccgagg cacgccagcc ggacggggtt
     6001 tcccccgccg cgaggaagac gcgggcgggc agctgctcgg actgggcgaa ataatattcc
     6061 gccatggcgg cgagcgagcc cccctgcagc gcgacgatgc cttgctgggg gtcgtgctcc
     6121 agcccgaaat cgacggtgaa ggcgagatag ccgctgccca gcatggcgcc ggcatcggca
     6181 tcgtccagga tttccgcctc ttccgtggta cgggcatagc cgcgcagggc gccgctatcg
     6241 gtgcaatcgg ccagcagcat gggcaccggc ccgtcgccgc gcgcctggac ggagaaggag
     6301 cccttgaatt tcagcgccga ggcgagggca gcggccaggg ccagcgcctc gccgagcagg
     6361 gctttgaccg gggtggcatg ctcatggcgc gacagaaggg tggcggcgag cggccccagg
     6421 cgcaccagcc ggccgcgcac gggctggtcg ggcagataga acggagtgat gccgcgcggc
     6481 acggagaggt cgggcacatg cgggcggctg gaatcgagga aggctggcaa ctctgtcatg
     6541 acgcctacag ttaagcatgt tttggcgccg ttgccagaag ccgcttggca ggttagcggt
     6601 tggcaatgac tgccgatacc ccggccgatc ttggccagta tgtaaagagg ctcaaccgcg
     6661 ccagcgttct ggtggtgggg gacgccatgc tcgaccgtta tgtatatggc gaagtgaacc
     6721 gcgtgagccc ggaggcgccg gtgccaattc tcaccgtgac gcgcgaggtg gcgatgccgg
     6781 gcggggcggg caatgtggtg cgcaatctca tcgctttgga tgccgcggcc gccttcgtgt
     6841 ccgtggtggg ggatgaccag gcgggctcgg acctgacagg cctcgttggc gggcaggaac
     6901 gcgttgagcc ctggctgctg gtgcatggcg gccgcaccac cacgctgaag acgcggtata
     6961 tcgcgcaagg gcagcatctg atccgcgccg accgcgagga aaccgtggaa ttgccgccga
     7021 aactggccga gcggctggtg cgcattgcgc tcgatgccat ggcggcgacg agcgtgaccg
     7081 tgctgtccga ctaccgcaag ggcgtgctga gcgagccggt gtgccgggcg ctgatcgagg
     7141 gcgccaagac gctggggcgg cgcgtgatcg tggaccccaa ggggcgggat tggagccgct
     7201 atcgcggcgc cgacgtggtg acgccgaatc ggaaggaatt gcacgaggcg accgggctcg
     7261 ctgtggataa cgaggccggc gtggtcgcgg cggcgcaggt tatattacag agacatgaat
     7321 ttggcgccgt gctcgtcacc cgcgccgagg acgggatgac cctggtgacg gcaagcgatg
     7381 tgcgccatta tccggctgag gcgagggaag tgttcgacgt gtccggcgcc ggcgacacgg
     7441 tggtggcggc gctcgcggcg gcactcgcgg cggaggtgcc tttggccgag gcggcgcggc
     7501 tggccaacat tgccggcggc atcgtggtgg gcaaggtggg cacggcggtg gcgcggccgg
     7561 ccgatattct cgccgccttg gccccggcca cgggcgcctt gcagaaagtg gtaaccccgg
     7621 cggcggcggc ggaagcggcg gagcgctggc ggctgcgcgg ctacaaggtg ggcttcacca
     7681 atggctgttt cgacctgctg catcctggcc atgtgcatct gctggagcag tgccgggcga
     7741 tgtgcgaccg gctcgtggtg gggatcaatt ccgacgcctc ggtgaagcgg ctgaagggcc
     7801 cgacgcgccc agcccagacc gaggcggcac gggcggcggt gctggcctcg ctggcgagcg
     7861 tcgaccaggt gtgcctgttc gaggaggaca cgccgatcga gctgatcaag cagatcaagc
     7921 cggatgtgct gataaaaggc gcggattata cacgcgagac agtggtggga gcggatctgg
     7981 tggagagctg gggcggcagc gtggcgctgg ccgagctgct gccggggcat tcgaccacgg
     8041 cgactttggc gcggctgcgc gggtaggcgg cactgaaccg ccggaggact cccgcattat
     8101 gacgctcccc ctcggcccgg aagtggacag cttcccccgc cccctgcctg cgcgggaaaa
     8161 aattctcggc aaccgcgtct ctctggagcc gctgcagcgc cggcacgggg cagaactctt
     8221 tgaagcggcg cgcggcgcgg atgagagttt tgcctatatg tcctacggcc ccttcggcgc
     8281 gcggccgcag atcgacggct tcatcgccca gcacgcctcc ctcacccatg ccgccttctg
     8341 ggcggtgcgg ccggtgacga ccgggcgggc ctcg
//
LOCUS       DASQCV010000022         1658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2325983, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000022 DASQCV010000000
VERSION     DASQCV010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2325983"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1279..>1658)
                     /locus_tag="VEQ16_00280"
     CDS             complement(1279..>1658)
                     /locus_tag="VEQ16_00280"
                     /inference="COORDINATES: protein motif:HMM:NF039957.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF6010 family protein"
                     /protein_id="HYP62287.1"
                     /translation="WEQIFWACFLVVIAAFYLSFAAYFGASPDAWRTELVGVVIFLIC
                     AVCGLFFRPAIAIGYVMHGLWDLSHSLSGSSIAGLSITDIPLGYGLFCSTYDFVVAGY
                     LMISDTAWHELGKFDLYFWRHSP"
BASE COUNT          384 a          606 c          469 g          199 t
ORIGIN      
        1 ccaccgccga acaacgtgat ctacaacaac gttcacaaca cggtcgtcgt caacaatgtg
       61 acgaacaccg tgacgattac gaatccgggc ggccagaccc agaccatgac gccagcggca
      121 gcgatggcgc ctgcggccca gcccgccgcc gtgtcgccgc aagcggtgca ggcgcctgca
      181 gcgcacgtcc ctgcagcctc cctcgcgccg gcgctgccgc cttcggtcgc gcacaaggcc
      241 gccacgcttg agacccaggc cccgcacgga ggggcgcagc cgagcgctgg cggatcagca
      301 gcgacacaac cgccggctca accaggccaa cctttgcctg ggatgaaagg gcagcctctg
      361 ccgtcggcga ccggcactcc gttgacgccg acaacgcagc cacgcacgcc atcacccacg
      421 cctggaggca gcaccaagcc cgcggcactc ccgtcgcaag ggcctgctgc aaaagcggtg
      481 acaccatcat cgccgtcggc cgtgacaacg ccaggaactc cgtcagccgc acccggaggc
      541 agcgccaagc ctggaacgcc accctcgcag gcgccgtctg caactacgcc cgcccccgcg
      601 atcacgccgg gaacgccggc accggcaccg ggaggaggtg ccaagcgtga aacgaagcca
      661 tcgcaaacgc cggctagcaa gccgtcgacc ccgacgccct cagccgcggt cacgccgctc
      721 gcgccatcat ccgcgcccgg agacagcgcc aagcctgcaa gtcccccacc ccaaacgccg
      781 gctgccaagc cctccacacc aacagcgcca tcagccacga ttacacctgg cacgcaaacg
      841 cctggaggca agcccgcaac gtcgccaccg caagtgcccg ccggaaaacc agcaaaacca
      901 tcatcgttac cggcgccgag caagcccgtc acggcctcgc cgtcgccacc tccgggaggg
      961 ggtgccaagc ctgcaacacc gccaccacga gtccccgccg caagtccggt gacgccgcct
     1021 gccggcccaa agccgatggc accagcggcc gccgcagcga gccgggcacc gcctccgcct
     1081 gcgcccaagc ctgttcaacc gcagccaaag ggatgcccgc cagggaagaa tatggccgtg
     1141 gtcaatggcc agccaagttg taggtgaatc cgatcggcac tcgcgcgccg cgcggcttcg
     1201 gacaccgcgc cccgccgagc agcgtgatga actcgcggcg gttgttcatt caatcacctc
     1261 gtcggcgcgc aggagctatc atgggctgtg ccgccagaag taaaggtcga acttgcctaa
     1321 ctcatgccag gcggtgtcac ttatcatgag atagcccgcg accacaaaat cgtacgttga
     1381 gcaaaagaga ccgtaaccta gtggaatgtc cgttatcgat aggcccgcaa ttgaagagcc
     1441 ggagagagaa tgggataggt cccatagacc atgcatgacg tagccaattg cgatagcagg
     1501 tcggaaaaac agcccacaca cggcacaaat aaggaaaatg acaacgccga ctagttcagt
     1561 tcgccaagca tcaggtgaag ctccgaaata ggcagcgaaa cttaggtaaa aggcagcgat
     1621 cactacaagg aaacaggccc agaatatctg ttcccatc
//
LOCUS       DASQCV010000023         2534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1828285, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000023 DASQCV010000000
VERSION     DASQCV010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1828285"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..369)
                     /locus_tag="VEQ16_00285"
     CDS             complement(<1..369)
                     /locus_tag="VEQ16_00285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62288.1"
                     /translation="MAAAIPDTEIAQYAAKPCARRNPASNPLKPIEIGQSHRRGDGRA
                     RTPVTRRGTPSTAPNRLGDFHHGRLIALLACVSSGAETPEDSGPGRHKVKDFKMKIRI
                     EKAQCVGNARCHAVAEHLYPL"
     gene            515..1807
                     /locus_tag="VEQ16_00290"
     CDS             515..1807
                     /locus_tag="VEQ16_00290"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HYP62289.1"
                     /translation="MADVVNSAAIGHEGRNTTSGLHTEHWGSGGPGHDERSAWMETDK
                     IMFARRALLSSIFGAGCGAALVAPALVAPAWADVAQYPQLADPAIPVRNLTRLYFVAG
                     ASAGSRVFAGGQEGVIIYSDDKGQTWAQANVPVSATITSIAFASPKVGWATGALGVIL
                     KTEDGGKSWVKQLDGIAEIALMNSTTQAYDAAEQADQAKQKPNSDAANADADAIDRAN
                     RRQQILAGQGPDKAFLSLLPVSETEVFAFGAYRFAEYSTDGGKTWADWSMHIGDEKSQ
                     NIYGAAAIGGAFYLTSETGLIFRSTDGGQSFTQLAQPGNATFFGIMDTGAGGLLAYGV
                     AGEMYLSTDQGKSWNQPNFTGTSNVNSVVALPDSGLLVAGDAGGGLWISKDHGNSFIL
                     ANRNPIMSINALLATGPTSFLILSGVGVFPVDLSKMGG"
     gene            1903..>2534
                     /locus_tag="VEQ16_00295"
     CDS             1903..>2534
                     /locus_tag="VEQ16_00295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HYP62290.1"
                     /translation="MDKPSIAPVIADLNDFDKGSGSLIERVLFNNRPLIMILCAIATI
                     FLGYQATKVRLSADYSSMIPVHQPYIVNFLNHYDDLSTQSNAVQIAVVADNGSILDKH
                     YLEVLQNLSNDVYLLPGINRPFMQSLWTPQTTWQLVTPDGITGGRVIDTNYDGSAAAL
                     QAVGTHIQNAGIIGQLVGLDYKSSMIYAPLLLNVEGKPLNYGQLARQLNQL"
BASE COUNT          480 a          778 c          782 g          494 t
ORIGIN      
        1 cagggggtag agatgctcgg ccacggcatg gcagcgggca ttgccgacac actgagcctt
       61 ctcgatacgt attttcatct tgaaatcttt cactttatgg cggccggggc cgctatcctc
      121 aggcgtttcc gccccactag agacgcaagc aagcagggcg atcaatcggc catgatggaa
      181 atcgcccagg cgattaggtg cggtggaggg cgtgccgcgt ctcgtcacgg gcgttcgcgc
      241 cctgccatcg ccgcggcggt ggctttggcc gatttcgata ggtttcaaag gattgctggc
      301 ggggttccgg cgggcgcacg gctttgcagc atattgagca atttcagtgt ccgggatggc
      361 ggccgccatg cctcgtgcca cggcacgcca gccaggaggg tcagggtcac tactcttctt
      421 gcgcgccgca aaaaccgggc gtccagacgg tttaagggtt ggaaatggcg gttcacctgg
      481 gatttcaaac ggaaatatga tgcataattt ggtcttggct gatgttgtca atagcgcggc
      541 catcgggcat gaagggcgca atacgacgtc cgggctgcat acagaacatt ggggaagtgg
      601 cggaccgggc catgatgaac gaagtgcctg gatggaaacc gacaagataa tgtttgctcg
      661 ccgcgccctg ctttcgtcta tttttggcgc cggttgcggc gccgccctgg tggcgccggc
      721 tttggtcgcg ccggcctggg ccgatgtcgc gcaatatccg cagctggccg atccggcgat
      781 tccggtgcgc aatctcacgc gcctgtattt tgttgccggt gccagcgctg gctcgcgcgt
      841 cttcgccggc gggcaggaag gtgtcatcat ctattcggat gacaagggcc agacctgggc
      901 ccaggccaat gtgccggtca gcgcaaccat tacctccatc gctttcgcct cgcccaaggt
      961 gggctgggcc actggcgcgc tgggcgtgat cctgaagacc gaggatggcg gcaagagctg
     1021 ggtgaagcag ctcgacggca ttgccgagat cgcgctgatg aacagcacga cccaggccta
     1081 tgacgcggcc gagcaggccg accaggcgaa gcagaagccc aattccgacg ccgccaacgc
     1141 ggatgcggac gccatcgacc gcgccaaccg ccgccagcag attttggccg gacaaggtcc
     1201 ggacaaggcg ttcctctcgc tcctgccggt cagcgagacg gaagtgtttg ccttcggcgc
     1261 ctaccgcttt gctgaataca gcacggatgg cggcaagaca tgggccgact ggtccatgca
     1321 tatcggcgat gagaagagcc agaacattta tggcgcggcg gccattggcg gcgcctttta
     1381 cctcacctcg gaaaccgggc tgatcttccg ctccaccgat ggcggccaga gcttcaccca
     1441 gctggcacag ccgggcaatg ccactttctt cggcatcatg gacacgggcg ctggcgggct
     1501 gctggcctat ggcgtggcgg gcgagatgta tctcagcacc gaccagggca agagctggaa
     1561 ccagccgaac ttcaccggca cctccaacgt gaattccgtt gtcgccctgc ccgactctgg
     1621 cctgctggtc gcgggcgatg ccggcggcgg cctgtggatc agcaaggatc atggcaacag
     1681 cttcatcctg gccaaccgca acccgatcat gagcatcaat gcgctgctcg ccaccggccc
     1741 cacgagcttc ctcatcctgt ccggcgtcgg cgtgtttccg gtcgatttgt cgaagatggg
     1801 tggatgaatt gagccttctc acggtcaggg gcgctgccgc cgccgtgcat gtcaacaaga
     1861 tcgggccagg caggtccggc caagtagagg aaattgggta agttggataa gccgagtatc
     1921 gcgcccgtca tcgctgacct gaatgatttc gacaagggat cgggctccct catcgaacgc
     1981 gttctgttca acaaccgccc gctcatcatg atcctgtgcg cgatcgccac gatcttcctg
     2041 ggataccagg cgaccaaggt ccggctgtcc gccgactatt cgtcgatgat cccggtgcac
     2101 cagccctaca tcgtcaattt cctcaatcat tatgacgatc tctcgacgca gtcgaacgcg
     2161 gtgcagatcg ccgtggtggc cgataatggc agtatcctgg acaagcatta tctcgaagtg
     2221 ctgcagaatc tcagcaacga tgtgtatctg ctgccgggca tcaaccgccc gttcatgcag
     2281 tcgctctgga cgccgcaaac cacctggcag ctcgtcacgc ctgacggcat caccggcggc
     2341 cgcgtcatcg acacgaatta tgacggttcg gcggcggcgc tgcaggcggt cggcacccat
     2401 atccagaatg ccggcatcat cggccagctc gtcgggctcg attacaaatc ctcgatgatc
     2461 tacgcgccgc ttctgctgaa tgtcgaaggc aagccgctga attacggcca gctcgcccgc
     2521 cagctcaacc agct
//
LOCUS       DASQCV010000024         2112 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2823434, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000024 DASQCV010000000
VERSION     DASQCV010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2112
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2823434"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VEQ16_00300"
     CDS             <1..421
                     /locus_tag="VEQ16_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP62291.1"
                     /translation="AAVIVAHDGERVVGVSTCLPLAAEHPPVQQPFLDAGMDVSRIFY
                     FGESVLEKAYRGRGIGVTFFQAREAQAAGYATTAFCAVIRPPDHPLRPKDYVPLDEFW
                     RHRGYRPRPELVCTMSWRDITETQESPKRLQFWTKDL"
     gene            418..1290
                     /locus_tag="VEQ16_00305"
     CDS             418..1290
                     /locus_tag="VEQ16_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HYP62292.1"
                     /translation="MKLALAACGVNPPSSPKFFFARLDRLAADAALAGAELLMVPEYV
                     SMVLAGAEVKSPDLAAELLSVLNQTDALLDNFSTIAQRHKLHILGGSLPMRDAGSGKI
                     RNRAPFIAPSGKILFQDKQSMTRFEAEEWDISGGEGPRLFDTALGRIGVSICYDSEFP
                     LHVRTQVAAGAKLILIPSCTSTPAGFNRVRFSARARAVENQCYTAMVPLVGKAAWSGA
                     IDVNIGHSALFAPCDEGFPDDGVIAAGPLNEPGITFAEVNFTAIDIVRSNGNVLNHRD
                     WGAAVPPCPVVELI"
     gene            1303..>2112
                     /locus_tag="VEQ16_00310"
     CDS             1303..>2112
                     /locus_tag="VEQ16_00310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HYP62293.1"
                     /translation="MTRIFVIAGEASGDVLGSRLMTALRALEPGVSFSGIGGARMAEA
                     GLSSLFPMQELALMGLAEILPKLRHLKKRLDQTIAAIRAEKPDILLTIDSPGFTLRVL
                     KAIGPGGPKRVHYVAPQVWAWRQERVKHYPGLWDELLCLLPFEPAFFAPHGLHPVFTG
                     HPVLESGADKGDPAAFRARHNLAPDAVPIMLMPGSRVTETKRLLPVFRQTLALLAAEE
                     KSLVPVLAAAAGLADAVAAQTSDWAVRPIIVRDVAERYDAFAAAHAALTKSG"
BASE COUNT          339 a          755 c          628 g          390 t
ORIGIN      
        1 cgctgccgtc atcgtcgcgc atgatggcga gcgcgtggtc ggcgtctcca cctgcctgcc
       61 tctggcagcc gagcacccgc cggtgcagca acccttcctc gatgcaggca tggatgtgtc
      121 ccgcatcttc tatttcgggg aatccgtgct ggagaaagcc tatcgcggcc gcggcatcgg
      181 cgtcaccttc ttccaggccc gcgaggccca ggccgcgggc tacgccacca ccgccttctg
      241 cgccgtcatc cgcccgccgg accatccgct ccgccccaag gactatgtgc ccttggacga
      301 attctggcgc catcgcggct accgcccgcg cccggagctt gtctgcacca tgagctggcg
      361 cgatattacg gaaacacagg aaagcccgaa gcgcctgcaa ttctggacca aggatttatg
      421 aagctcgctt tggccgcctg cggcgtcaac ccgcctagct cccccaaatt cttcttcgcc
      481 cgcctcgacc gcctcgccgc cgacgctgcc ctggccggtg cagagctgct gatggtgccg
      541 gaatatgtat ctatggtgct ggctggcgca gaggtgaaat cccccgattt ggcggcggaa
      601 cttttgtccg tcctcaacca gacagacgcg ctgctggaca atttttccac catcgcccag
      661 cgccacaaac tgcatattct gggcggctcc ctgcccatgc gcgacgctgg cagcggtaaa
      721 atccgcaacc gtgctccatt catcgccccg tccggcaaaa tcctgttcca ggacaagcag
      781 tccatgaccc gcttcgaggc ggaggaatgg gacatttcgg gcggcgaggg cccgcgcctg
      841 ttcgataccg cgctcggccg catcggcgtg tcgatctgct atgattcgga attcccgctc
      901 catgtccgca cccaggtggc ggcgggggca aaactcatcc tcatccctag ttgcacctct
      961 accccggccg gcttcaaccg ggtgcggttt tccgcccgcg cccgcgcggt ggaaaaccaa
     1021 tgctacacgg ccatggtgcc gctggtgggc aaggccgcct ggtccggcgc catcgacgtg
     1081 aatatcgggc acagcgccct cttcgcccca tgtgacgaag gcttccccga tgacggcgtc
     1141 atcgccgccg ggccgctcaa cgagccgggc ataaccttcg ccgaagtgaa tttcacagcc
     1201 atcgacattg tgcgcagcaa cggaaacgtg ctgaatcacc gcgactgggg cgcggccgtt
     1261 ccgccctgcc cggtcgtgga gcttatctag gctggagctt atgtgacgcg catttttgtc
     1321 atcgccggcg aagcaagcgg cgacgttctt ggctcccggc tgatgaccgc cctgcgcgct
     1381 ttggagccgg gcgtgagctt ttccggcatt ggcggcgcgc gcatggcgga ggccgggctc
     1441 agctcgctct ttcccatgca ggagctggcc ctgatggggc tcgcggaaat cctgcccaag
     1501 cttcgccatc tcaagaagcg gctggaccag accatcgccg ccatacgcgc cgaaaagccg
     1561 gatattctgc tcaccatcga ttcccccggt ttcacactgc gcgtgctgaa agccataggt
     1621 ccgggcggac caaagcgcgt gcattatgtc gccccgcagg tctgggcctg gcggcaggag
     1681 cgcgtgaaac attatcccgg cctgtgggac gagctgctct gtttgctacc cttcgagccg
     1741 gcatttttcg cgccgcacgg gctgcatccc gtcttcaccg ggcatccggt gctggaatcc
     1801 ggcgcggaca aaggcgatcc tgccgccttc cgcgcccgcc ataaccttgc ccccgatgcc
     1861 gtgcccatca tgctcatgcc gggctcgcgc gtaacggaaa ccaagcgcct gctgcccgtc
     1921 ttccgccaga ccctggcgct cctcgccgcc gaggagaaga gcctggtgcc cgtactggcc
     1981 gccgccgcgg gcctggccga tgccgtcgcg gcgcagacat ccgactgggc ggttcgcccc
     2041 atcatcgtgc gcgatgtggc cgagcgctac gacgccttcg ccgccgccca tgccgcactc
     2101 accaaatccg gc
//
LOCUS       DASQCV010000025         1863 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1994754, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000025 DASQCV010000000
VERSION     DASQCV010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1994754"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            229..>1863
                     /gene="dnaG"
                     /locus_tag="VEQ16_00315"
     CDS             229..>1863
                     /gene="dnaG"
                     /locus_tag="VEQ16_00315"
                     /inference="COORDINATES: protein motif:HMM:TIGR01391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HYP62294.1"
                     /translation="MDFAEHLKSSVDIVKVIGEYVRLRRVGTTGRYTGLCPFHQEKTP
                     SFGVHQVRQFYKCFGCDAKGDLINFVMQIEGLTFWEALKLLAERNGIPLPKRSDYSDA
                     ETKLRAALMEMHSIAAETFQANLHGPQGVEARAYLERRGVAAEMIEAFGLGFADTSGQ
                     TLVRRLSESGFAPESLEASGLVRRRQEGGGFYDAFRGRLMFPIHNESGKTIAFGGRAM
                     RDDDQPKYLNSPETPIYRKTSILYNLHRAKEQMRRLNRAVLVEGYMDVIGTYAAGVRE
                     VVASCGTALTPAQVRAMRRHADGVVVNFDPDAAGANAAERAIPMLLEEGVDVKVLALE
                     GGLDPDEYVKENGADAYLAKLSAAAGYFHWLADRARTKFDMRSAHGRVEAFKSLLPAV
                     QKIPDRLERAAVADDLSSYLGLERSLVLDQLKRAAADRRSEPRAPSEVAIPANERILL
                     SALLASDQARQEVLPLLTPEMLANFQTREIFEALRHSAEASGPAAFAATEARLGERAQ
                     KLLHQAAAADEVSDEESGLEQARSCLRRLQEGQRKKQ"
BASE COUNT          375 a          548 c          612 g          328 t
ORIGIN      
        1 atccgccgcc ccacgcgctg ccgatgcaga atttcgaaac gaacccagca gcgtccaact
       61 gccgaattct ataccttacc tgcactcgct cgatcacggg accgcccgta gaagactctt
      121 tccgtcaatc caccagtcaa gcgggtcacc ttgatagagg cgccggcgcc tcagcatcgg
      181 cgcaaccatc cttgcaacgg ccacgctacc atagcgaatg caggcctgat ggacttcgcc
      241 gagcatctca aatcctccgt tgacattgtc aaagtgatcg gcgaatacgt ccggctgcgc
      301 cgcgtcggca cgaccgggcg gtacaccggc ttgtgcccgt tccatcagga aaagacgcct
      361 tcatttggcg tccatcaagt ccggcagttc tacaaatgct tcggctgcga cgccaagggc
      421 gacttgatca acttcgtcat gcagatcgaa gggctgacct tctgggaagc gttgaagctg
      481 ctggcggaac gcaacggcat tccactgccc aagcgttcgg actattccga cgcggagacc
      541 aagctgcgcg cggcgctcat ggagatgcac tcgatcgcgg cagagacgtt ccaggcgaat
      601 ctgcatgggc ctcagggcgt ggaggcgcgc gcatatctgg agcgtcgcgg cgtcgcagcg
      661 gaaatgattg aagcattcgg attaggcttc gccgatacgt ccggccagac gctggtccgg
      721 cggctgagtg aaagcggatt tgcgccggaa tcgctggagg cgtcaggatt ggtccggcgc
      781 cggcaggagg gcggcggctt ttacgatgct ttccgcggcc ggctcatgtt tccgattcat
      841 aacgaatccg gaaaaaccat cgccttcggc gggcgcgcca tgcgcgatga cgaccaacca
      901 aaatatttaa attctcccga aacaccgatt taccgtaaga catccatcct gtacaacctg
      961 caccgtgcta aagaacaaat gcgccggctc aaccgggccg tgctggtaga aggatatatg
     1021 gacgtgatcg gaacctatgc cgcgggcgtg cgggaagtgg tggcgagctg cggcactgcc
     1081 ttaacgccgg cgcaggtccg ggcaatgagg cggcacgccg atggcgtggt ggtgaatttc
     1141 gacccggacg cggcgggcgc caatgccgcc gagcgcgcca ttcccatgct gctggaggaa
     1201 ggcgtagacg tgaaggtgtt ggcgctggag ggcgggctcg atcctgatga atatgtgaag
     1261 gaaaacggcg cggacgccta cctcgccaag ctgagtgcgg ctgccggcta ctttcactgg
     1321 ctggcggatc gggcgcggac aaaattcgat atgcgctccg cccacgggcg tgtagaggct
     1381 ttcaagagct tgctgcctgc cgtgcagaag atcccggacc ggctggagcg cgcggccgtg
     1441 gcggacgatt tgtcgtcgta cctgggattg gagcgaagct tggtgctgga tcagttgaag
     1501 cgcgcggcgg cggaccgccg gtccgagccc cgcgccccgt cggaagtcgc gattccggct
     1561 aatgagcgga tcttgttatc cgcgctgctg gcgagcgatc aggcgcggca ggaggtgctg
     1621 cccctgttga cgccggaaat gctcgcgaac ttccagacca gggagatttt cgaagcgctg
     1681 cggcacagcg cggaggcaag cggcccggct gcattcgccg ccaccgaggc gaggcttgga
     1741 gagcgggcgc aaaagctgct acatcaggcg gcggctgccg atgaggtaag cgatgaggag
     1801 tccggcctag agcaggcgcg ttcctgcttg cggcgactgc aagaggggca aaggaagaag
     1861 caa
//
LOCUS       DASQCV010000026         1917 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2990066, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000026 DASQCV010000000
VERSION     DASQCV010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2990066"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..804
                     /locus_tag="VEQ16_00320"
     CDS             <1..804
                     /locus_tag="VEQ16_00320"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYP62295.1"
                     /translation="VDKVQFVGSGATAKKVLRNAADTLKPCGLELGGKSAVIVFADAD
                     LQNAAKRGLSGAVSANGQGCVNGTRLLVERPIYDQYLAMLTAMAGHIKIGDPLDNGTM
                     VGPVISEHSLTRILGIVDRAVKEEGGRLVTGGQRLGGDAADGFFLPITIVADVGNDAN
                     IAQHEVFGPVLTVSPFDAEEEAIALANGTAYGLGGYIHTNNLRRAHYMASSLDSGMIH
                     VNGSGEGMTPCCPFGGMKQSGYGRLGGEAGLHEFLRIKNVWMSLSKPGV"
     gene            810..1592
                     /locus_tag="VEQ16_00325"
     CDS             810..1592
                     /locus_tag="VEQ16_00325"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HYP62296.1"
                     /translation="MNLLDPAVRTQAGIARRADLTGLAPPEPATLLDASWRDYIYAEV
                     WTRPGLDLRSRFLISMASAAGARDHDATERYARGALHKQELTLAELREAALHVAVYAG
                     WTSGQVLDDAITRAATVLGLEAAKIPPIRAEPWDPAVRHKEGQANFATVMCFGGPPPK
                     TAYFEGGIVNFVFGEMWMRPGLDQRSRRWLTLVGVCDSSSSTPIRSHIWAAMASGNAT
                     AGEMYEFVLQYAIHAGWPKGSVAQGAVMEQADRVAKGLPFEA"
     gene            1603..>1917
                     /locus_tag="VEQ16_00330"
     CDS             1603..>1917
                     /locus_tag="VEQ16_00330"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP62297.1"
                     /translation="MVQATDMAGRAALVTGAASGLGRATALALTKAGADVCIVDVNPK
                     GLEETAASIRELGGKVLVHAADLSVAENCAPAVEAALAEFGRLDALCNVAGLIMFTNT
                     PEM"
BASE COUNT          329 a          598 c          632 g          358 t
ORIGIN      
        1 gtcgacaagg tgcagttcgt cggctccggc gccaccgcca agaaggtgct gcgcaatgcg
       61 gcggacacgc tgaaaccctg cgggctggag ctgggcggta aatcggccgt catcgtcttc
      121 gccgatgcgg atttgcagaa tgccgccaag cgcggcctgt ccggcgccgt ttcggccaac
      181 ggccagggct gcgtgaatgg cacgcgcctg ctcgtggagc gcccgattta tgaccaatat
      241 ctcgccatgc tcaccgccat ggctgggcat atcaagatcg gcgacccgct ggataacggc
      301 accatggtcg ggccggtgat ttccgaacat tcgctcaccc gcattctcgg cattgtagac
      361 cgtgcggtaa aagaggaagg cgggcgcctc gtcaccggcg ggcagcgcct gggcggcgac
      421 gcggcggatg ggttttttct ccctatcacc atcgtcgccg atgtcggcaa cgacgcgaat
      481 attgcgcagc atgaagtgtt cggcccggtg ctcaccgtgt cgccgttcga tgcggaagag
      541 gaagcgatcg cgcttgccaa tggcacggcc tacgggctcg gcgggtatat ccacaccaat
      601 aatctgcgcc gcgcgcatta catggcctcg tcgctcgatt ccggcatgat ccatgtcaac
      661 ggctccggcg aaggcatgac gccttgctgc ccgttcggcg gcatgaagca gagcggctat
      721 ggccgcctcg gcggcgaagc cggcctgcat gagttcctgc ggatcaagaa tgtgtggatg
      781 agcctgtcca agccgggagt ttgaaattca tgaaccttct cgatcctgcc gtccgcaccc
      841 aggcgggcat tgcgcgccgt gccgacctca ccggtttggc cccccccgaa cccgccacgc
      901 tgctcgacgc ttcctggcgc gattatatct atgccgaagt ctggacccgt ccagggctcg
      961 atctgcgctc gcgcttcctc atctccatgg ccagcgccgc cggcgcacgt gaccatgatg
     1021 cgacggaacg ttacgcgcgc ggcgccctgc acaagcagga gctgaccctc gcggaattgc
     1081 gcgaggcggc cttgcatgtt gccgtttatg ccggttggac ctcgggccag gtgctggatg
     1141 atgccatcac ccgcgccgcc acggtgctgg ggctggaggc ggctaaaatt ccgcccatcc
     1201 gcgccgagcc ctgggaccct gcggtgcgcc ataaggaagg ccaggccaat ttcgccaccg
     1261 tgatgtgctt cggcggtccg ccgccgaaga cagcctattt cgaaggcggc atcgtcaatt
     1321 tcgtgttcgg cgagatgtgg atgcgccccg gcctcgacca gcgctcacgc cgctggctca
     1381 ctttggtggg cgtatgcgat tcctcctcca gcacacccat ccgctcgcat atctgggcgg
     1441 ccatggcgag cggcaatgcg accgctggcg aaatgtatga attcgtgttg caatatgcca
     1501 ttcatgcggg ctggccgaag ggctcggtgg cgcagggcgc ggtgatggaa caagctgacc
     1561 gcgtggccaa gggactgccg ttcgaggcgt aaggggagaa aaatggttca agcaacggat
     1621 atggcgggca gggctgccct ggtgactggc gcggcctcgg gcctcgggcg cgccacggct
     1681 ttggcgctga cgaaagcggg cgcggatgtc tgcattgtcg atgtgaatcc caagggactt
     1741 gaggaaacgg cggcttccat ccgtgagctg ggcggcaagg ttctggtaca tgccgccgat
     1801 ctttcggtgg cggaaaattg cgcgccggcc gtagaagcgg cgctggcaga attcggccgg
     1861 ctcgacgctt tgtgcaacgt cgccgggctt atcatgttca ccaacacgcc ggagatg
//
LOCUS       DASQCV010000027         3655 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1995154, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000027 DASQCV010000000
VERSION     DASQCV010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3655
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1995154"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..536
                     /locus_tag="VEQ16_00335"
     CDS             <1..536
                     /locus_tag="VEQ16_00335"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HYP62298.1"
                     /translation="RLLWPGVAQMNGHAQIFVQMVGLGFDGAVVQGIQPLLKRVIGRG
                     AYVWQSLWESVAYRFPPLHLSIDGEAHEAASVVVSKGRLYGGPYLMAPEARPEAPGFQ
                     VVLFENPGTLPALLSGTALPLGLLPCCPGVRILPARHVQFEPDSARIPAQADGDKMPA
                     APCEVRDAAAPISLVVG"
     gene            606..1586
                     /locus_tag="VEQ16_00340"
     CDS             606..1586
                     /locus_tag="VEQ16_00340"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003653591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016615 - malate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HYP62299.1"
                     /translation="MKTPVRVAVTGAAGQIGYAILFRIANGDLLGKDQPVILNLLDLP
                     QAQKALAGVIMELNDCAFPLLAGIVPTDDPNVAFKDVDIAILIGSRPRGPGMERRDLL
                     AANAEIFKVQGKALNDVAKRDVKVLVVGNPANTNAYIAMKSAPDLPKENFTAMLRLDH
                     NRAVSMLAEKAGVAVKEIEKVAVWGNHSPTMYADYRNASAGGKALPALINDEAWYKDT
                     YLSAVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGSNGRWVSMGIPSDGSYGVPK
                     DVMFGVPVTTEGGKYKRVEGIAIDEFSQSRLDITLKELLEEQEAVAGLLG"
     gene            complement(1743..2114)
                     /locus_tag="VEQ16_00345"
     CDS             complement(1743..2114)
                     /locus_tag="VEQ16_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-binding protein"
                     /protein_id="HYP62300.1"
                     /translation="MHMIHDPSAPASPTITFDQFLAVDIRAGRVIEVEPFPEARKPSY
                     KLRIDFGPVIGVKRSSAQITEHYTLKELHGRMIAAVVNFPPRQIGKFMSEVLTLGFPD
                     ENGAVVLVAPGKDVPLGGRLF"
     gene            complement(2160..2861)
                     /locus_tag="VEQ16_00350"
     CDS             complement(2160..2861)
                     /locus_tag="VEQ16_00350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HYP62301.1"
                     /translation="MPDYELYYWSVPFRGQFVRAVLAHAGKDWTEGGGAAIPKLMDSP
                     VKRMPVPFMGPPLLIDKKADFAIAQMPAIILYLGETLGLLPATPALRALTMKTVNDAN
                     DVIDEITLDGGRLMWTKKSWKEFTPRLRKWMSFWEETGRRHGLTAESGYLLGGEAPGI
                     ADVVMATLWSTMTERFDKIEAILEDEAPMTAALTRRVAALPAQAKLAAKAKRDYGDSY
                     CGGQIEASLRKVLKT"
     gene            3046..>3655
                     /locus_tag="VEQ16_00355"
     CDS             3046..>3655
                     /locus_tag="VEQ16_00355"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYP62302.1"
                     /translation="MDIVDAQLHMGRGKIEAALEAMDALGIESAVLDELWGMQPGAGI
                     THYDPGHVLPNGAWRTGFPTAHEAALIYPERFAFLVRIDRLDPQLESVMRVVGSTKGA
                     CAFRLQPVWTQDEAEAFVAGAYDGLLDIAQDIGLPICWFVPGFVEQLRPYIEKYPKLN
                     FVIDHCGMGFTGVSTWRPAQETALANSPAYFERVLALAEFPNV"
BASE COUNT          626 a         1115 c         1228 g          686 t
ORIGIN      
        1 ccaggctgct ctggccgggg gtggcgcaga tgaacggaca tgcgcagatc ttcgtgcaga
       61 tggttgggct ggggtttgac ggtgctgtgg tgcagggcat ccagccgctg ctcaagcgtg
      121 tcatcggccg cggggcctat gtgtggcagt cgctatggga gagtgtcgcc taccggtttc
      181 cgccgttgca tctgtccatc gatggcgagg cgcatgaggc ggcgagcgtg gtggtgagca
      241 aggggcggct ttatggcggg ccctatctga tggcgcccga ggcgaggccc gaggcgccgg
      301 gcttccaggt ggttttgttc gaaaaccccg gcacgctgcc ggctttgctc tcgggcacgg
      361 cgctgccgct ggggctgctg ccgtgctgcc ccggcgtgcg cattctgccg gcccgccatg
      421 tgcaattcga gccggattcc gccagaattc cggcccaggc cgatggcgac aagatgcctg
      481 ccgcaccctg tgaggtacgg gacgcggcgg cgccgatttc gctggtggtg gggtaagtcc
      541 aggcggggct tgacctcttg ccctgaagtt ttaagggaag ccgtccactc aagggagacc
      601 gacatatgaa gacccccgtg cgcgttgccg tcaccggtgc ggctggccag atcggctatg
      661 ccatcctgtt ccgtatcgcc aatggcgacc ttttggggaa ggaccagccg gtcatcctca
      721 acctgctgga cctgccgcag gcgcagaagg ctctcgccgg cgtcatcatg gaactgaatg
      781 actgcgcctt cccgctgctg gccggtatcg tgcccaccga cgacccgaac gtggccttca
      841 aggacgtgga catcgccatt ctcatcggct cgcgcccgcg cggccccggc atggagcgcc
      901 gcgacctgct cgccgccaat gccgagatct tcaaggtgca gggcaaggcg ctcaacgatg
      961 tcgccaagcg cgatgtgaag gtgctggtcg tcggcaaccc ggccaatacc aatgcctata
     1021 tcgccatgaa gtccgccccg gacctgccga aggaaaactt caccgcgatg ctgcgcctcg
     1081 atcacaaccg cgccgtgtcc atgctggcgg agaaggccgg cgtggcggtg aaggaaatcg
     1141 agaaggtggc cgtttggggc aaccactcgc ccaccatgta tgccgattac cgcaacgctt
     1201 ccgcgggcgg caaagccctg ccggcgctca tcaatgacga ggcctggtac aaggacacct
     1261 atctctccgc cgtcggcaag cgtggtgcgg ccatcatcga ggcgcgcggc ctgtcttccg
     1321 ccgcttcggc cgccaatgcc gccatcgacc atgtgcgcga ctgggtgctg ggctccaatg
     1381 gccgctgggt ctccatgggc attccctcgg acggctccta tggcgtgccg aaggacgtga
     1441 tgttcggcgt gccggtgacc accgagggcg gcaaatataa gcgtgtcgaa ggcatcgcca
     1501 tcgacgagtt ctcacagagc cgcctggaca tcacgctgaa ggaactgctc gaggagcagg
     1561 aagccgtcgc cgggctgctg ggctaaggcc ccgccgcgtg cgccagggga cgctgtccct
     1621 tggtgtacgc ccggttctga aaaagagggc catgccgtgc gtgctgcgag cgcgtgccgg
     1681 tatggctctc tctttttctg actggggcga tgctcccagg ctcgtgcggc ctgttcaatg
     1741 cgtcagaata accgcccgcc cagcgggaca tccttgcccg gggccaccag gaccacggcg
     1801 ccattttcgt ccgggaaacc cagcgtcagc acttcggaca tgaacttccc gatctgacgg
     1861 ggcggaaaat tcaccacggc ggcgatcatg cgaccgtgca gttccttcag cgtgtaatgc
     1921 tctgtgatct gcgcgcttga acgcttgacg ccgatcacgg gaccgaaatc gatccgcagc
     1981 ttgtaggaag gcttccgcgc ctcgggaaag ggctcgactt cgatgacgcg gccggcacgg
     2041 atatcgaccg cgaggaactg atcgaacgtg atggtgggag acgcgggggc ggaaggatca
     2101 tgtatcatgt gcatggcacg cgactttata gagacagggc gccgcggcaa gaacctggcc
     2161 tatgtcttta aaaccttgcg cagagatgcc tcgatctgcc cgccgcaata ggaatcgcca
     2221 tagtcacgct ttgccttggc agccagcttg gcttgtgccg gcagggcagc gacccgccgc
     2281 gtcagagcgg ccgtcatggg ggcttcgtcc tccaggatcg cttcgatctt gtcgaaacgc
     2341 tcggtcatgg tcgaccataa agtcgccatc accacatcgg cgatgccggg cgcctcgccg
     2401 cccagcaggt agccggactc cgccgtcagc ccgtggcggc gtcctgtctc ttcccagaag
     2461 gacatccatt tgcgcaggcg gggcgtaaat tccttccagc ttttcttggt ccacatcagg
     2521 cgcccgccat cgagggtgat ttcgtcgatc acgtcattgg cgtcgttgac ggtcttcatc
     2581 gtcaaggcgc gcagggcggg ggtggcgggc aggaggccga gcgtttcgcc gagatagagg
     2641 atgatggcgg gcatctgcgc gatggcgaaa tccgcttttt tgtcgatgag cagaggcggg
     2701 cccatgaagg ggacgggcat gcgcttgacc gggctgtcca tcagtttggg gatggccgcg
     2761 ccgccaccct cggtccagtc tttgccagca tgggccagca cggcgcggac gaactggccg
     2821 cggaatggca cggaccagta atagagctcg taatcgggca tggcagggct cccgttgcgg
     2881 ggggacccgc ctgcatagcg ccgccgggcg ggcggctgta acggaagaaa cggaaggacc
     2941 ggacaagttt gactcccgcc ttagcatccc ccaagattgc cctcaaagcc cggccggact
     3001 ttgtatacaa acgcataata gggccagggc tggaggaaac gcgaaatgga catcgtggat
     3061 gcgcagctcc atatgggccg cggcaagatc gaggcggcgc tggaggcgat ggatgcgctc
     3121 ggcatcgagt ccgcggtact ggacgagctt tggggcatgc agccaggggc cggcatcacc
     3181 cattatgatc ccggccatgt cctgcccaat ggcgcctggc gcaccggctt tccgacggcg
     3241 cacgaggcgg cgctgattta tcccgagcgt ttcgcgtttc tggtgcgtat cgaccggctg
     3301 gacccgcaat tggagagcgt gatgcgggtg gtgggctcga ccaagggggc ttgcgccttc
     3361 cggttgcagc cggtctggac ccaggatgag gcggaggcgt ttgttgccgg cgcctatgac
     3421 gggttgctgg acatcgcgca ggatattggc ttgcccatct gctggttcgt gcccggcttt
     3481 gttgagcagc tgcgccctta tatcgagaaa tatccaaagc tgaatttcgt catcgaccat
     3541 tgcggcatgg ggtttaccgg cgtttccacc tggcggccgg cgcaggagac tgcgttggcc
     3601 aacagcccgg cctatttcga gcgcgtgctg gcgctggcgg agtttcccaa cgtgg
//
LOCUS       DASQCV010000028         1690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_834314, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000028 DASQCV010000000
VERSION     DASQCV010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1690
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_834314"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1548)
                     /gene="cydD"
                     /locus_tag="VEQ16_00360"
     CDS             complement(<1..1548)
                     /gene="cydD"
                     /locus_tag="VEQ16_00360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055051 - ATP-binding cassette (ABC)
                     transporter complex, integrated substrate binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0033230 - ABC-type cysteine transporter
                     activity [Evidence IEA];
                     GO_process: GO:0033228 - cysteine export across plasma
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductant ABC exporter subunit CydD"
                     /protein_id="HYP62303.1"
                     /translation="MARAARVDSRLMQEGRRSSGALYANIGLGLVSGWAVIAQAVCLA
                     QIVNGLSILHRPLGAETPWFIALALLFLLRAALAYAAEIAAFRASSRIKTGLREALLA
                     RLFAAGPLAASGEASADVAATLLEGVEALEPYFSRYMPQMALCVAVPLAILALVFPLD
                     LYSGLILLIAGPLVPVFMVFVGYRAEAINQRQWDKLLRLSSHFLDVLQGLTTLKLFGR
                     ARDEIAIATRLSEDYRRTTMQGLRVAFLTSAVLEFFASLAIALVAVLFGARLIHGHID
                     FYRAFLVLLLAPEYFVPLRGLSVHYHARMTAIAAARRMFDLLDTPPLPQGRKILPRLP
                     QIGLTCTELSFSYGGIKVLDGLNADFPAGKITAIVGASGAGKTTLARLLLKFAAPESG
                     HVILNDAHDLAELAAEAWWPMLAWVPQNPRLFHGSIAENLRIARLGAPLEALREAAAR
                     ARALDFIEALPHGFDTVIGDQGAGLSGGQIQRLALARAWLKDAPLLILDEATASLDPD
                     SEAEILDA"
BASE COUNT          351 a          558 c          560 g          221 t
ORIGIN      
        1 cgcgtcgaga atctccgcct cgctatccgg gtccaggctg gccgtggctt cgtccaggat
       61 gagcagcggc gcatccttca gccaggcgcg ggcgagggcg aggcgctgga tctgcccgcc
      121 cgagagcccc gccccctggt cgcctataac cgtgtcgaac ccgtgcggca gcgcctcgat
      181 gaaatccagc gcccgggcgc gggcggcggc ctcgcgcagc gcctccagcg gcgcaccgag
      241 ccgggcaatg cgcagatttt cggcgatgct gccatggaac aggcgcggat tttgcggcac
      301 ccaggccagc atcggccacc aggcctcggc ggcgagctcg gccaggtcat gcgcatcatt
      361 gaggatgaca tggccggact caggtgcggc gaatttcagc agcagccgcg ccagcgtggt
      421 cttgccggca cccgaggcgc cgacgatggc ggtgatcttc ccggccggaa aatcggcatt
      481 caacccgtcc agcactttta tcccgccata ggagaagctg agttccgtgc aggtaaggcc
      541 gatctgcggc agacgaggca gaatcttgcg cccttgcggc agaggcggcg tgtccagcag
      601 gtcgaacatt cgccttgccg cggcaatcgc cgtcatgcgc gcatggtaat gcacggagag
      661 cccgcgcagc ggcacaaaat attctggcgc caggagcaac accagaaagg cacggtaaaa
      721 atcgatatgg ccatggatga gccgcgcccc gaacagcacg gcgacgagcg cgatggcgag
      781 cgatgcgaaa aattccagca ccgcgctagt gagaaacgcg acacgcaggc cctgcatggt
      841 ggtgcggcgg taatcctccg agaggcgcgt ggcaatggcg atctcatcgc gcgcccggcc
      901 gaacagcttc agcgtggtga gcccctgcaa cacgtcgaga aaatggctgg agaggcgcag
      961 caacttgtcc cattggcgct ggttgatggc ctccgcccgg tagccgacga acaccatgaa
     1021 gacaggcacc agcggcccgg caatgagcag gatgaggccg gagtaaagat cgagcgggaa
     1081 gaccagcgcg agaatggcga gcggcacggc cacgcagagc gccatttgcg gcatatagcg
     1141 ggagaaatag ggctccagcg cctccacgcc ctccagcaag gtggcggcga catcggcact
     1201 cgcctcgccc gaagcggcca gcgggccggc ggcaaacaaa cgggcgagca gagcttcgcg
     1261 caacccggtc tttatgcgcg acgaggcccg gaaagcggcg atttccgccg cataggccag
     1321 cgcggcgcgg agcaaaaaca acagggccaa cgcgatgaac cagggcgtct ccgcgccgag
     1381 cgggcggtgc aagatggaaa gcccattgac gatctgcgcc aggcacacag cctgggcgat
     1441 gacggcccag ccggacacca gccccagccc aatgttcgca taaagcgcgc cgctgctgcg
     1501 gcgcccttcc tgcatcaacc tcgaatcgac acgcgctgcc ctagccacgc ccctccccta
     1561 gccttagcct ggggcgggag gcaaatcatc cgcccggtgc ccagcgcagc aggcggcgca
     1621 gtaccgcatc cacaatcacg taaagcccga tcgtcatggc ggcgagaatg accagggcgg
     1681 cgaacatgag
//
LOCUS       DASQCV010000029         2183 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_834438, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000029 DASQCV010000000
VERSION     DASQCV010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_834438"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            113..814
                     /locus_tag="VEQ16_00365"
     CDS             113..814
                     /locus_tag="VEQ16_00365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine rich repeat-containing protein"
                     /protein_id="HYP62304.1"
                     /translation="MKRLTILALGLSAAVALAPNAFAWGAYHGGFGGGAYHGAWGGGA
                     WHSGAFGTTGVHYGPSGATAYHSGAYGTSAYHIGAFGTGTYHSGAYGTYGYHYGGGAY
                     YGGAYYHGGTYYGGTAVVTPVYTGRGAAAAGAAVGAAATSAGATSAAYAPATTNYYPP
                     PYYQPNALLSASGATAQMRPGAQAVLTECKPDIARFCSQVAPSQDRIKACMTEHLREL
                     SEPCKEGLFQAWLRQ"
     gene            complement(990..>2183)
                     /locus_tag="VEQ16_00370"
     CDS             complement(990..>2183)
                     /locus_tag="VEQ16_00370"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP62305.1"
                     /translation="AAPDGRLFIVPPPPIQGIGNAGGIQMQLELLGGSYNYQKLDEVT
                     QQLVKQATANPQLQHVLTTFSPGGPHVSVTVDRARAQTLRVSVGDVFSALSSYLGSTF
                     VNQFNKFGQVFQVYVQAESQFRLQPDDLLNLYVRSSDNQMVPIGAVAHLGEEVGPSLI
                     TLYNLYPSATIIGAPARGVSSGQSLTAMEDIAKRTLPSDVGYQWTAMSFQEKLTGNQL
                     YYLFGLSVLLVYLCLAGQYESWILPLAVLSAVPLALLGPVIALTSLGVANNLYTQIGL
                     ILMIALSAKNGILIVEMAREGRIMHGKPIREAAIDAARSRFRPILMTSFAFGLGVVPL
                     VLATGAGADGRISLGLSVLSGIVASTCLAVLFVPSFFTVLQGFEEWRKARKKAAPVAA
                     PRAAE"
BASE COUNT          419 a          722 c          671 g          371 t
ORIGIN      
        1 tcaacatcca tcccgccgat gccgagttcg cctttcagcc accggccgga gcggaacagg
       61 tggcgttgaa gccggcagcc acgccggctc cggccaagaa aggaggcaag tgatgaagcg
      121 gctgacgatc ctcgcgctgg gcctctcagc ggcggtagcg ctggcgccca atgcattcgc
      181 gtggggagct tatcacggcg ggttcggtgg cggggcctat cacggggcct ggggcggcgg
      241 cgcctggcac agcggcgcct tcggcaccac cggtgtccac tatggccctt ccggcgccac
      301 cgcctaccac agtggcgcct atggcacgag cgcgtaccac atcggcgcct tcggcaccgg
      361 cacttatcac agcggcgcct acggcaccta cggttaccac tacggtggcg gcgcctatta
      421 tggcggcgcc tactaccatg gcggcaccta ctatggcggg acggcggtcg tcaccccggt
      481 ctacacgggg cggggtgccg ccgcagctgg cgcggcggtt ggcgccgccg ctacctccgc
      541 cggcgctacc tccgccgctt acgcaccggc aaccacgaat tattatccgc cgccctacta
      601 ccagccaaac gcgttgctct ccgcatcggg cgcaacggca caaatgcggc ccggcgcgca
      661 ggcggtcctg acagaatgca agcccgacat tgcgcggttc tgtagtcagg tcgcacccag
      721 ccaagacagg atcaaggcct gcatgacgga gcatctccgc gagctttcag agccctgcaa
      781 agaagggctc ttccaagcct ggcttcgaca gtgagcagct gattctcgtc cagtccttac
      841 ctctgctgcc accgctacct ccgccgctta tgcgagggcg tgcacgaact attgtccgcc
      901 gcccctactc ccggccatat acgtggtagc agcggccgaa ttcaaagccg gtgggctttc
      961 tcgcaagtct tagagcctgg atgctctgct cactccgcgg cgcggggggc cgcaaccggc
     1021 gccgcctttt tgcgcgcttt gcgccactcc tcgaagccct gcagcaccgt gaagaaggaa
     1081 gggacgaaca gcacggcgag acaggtcgac gcgacgatgc cactcagcac gctgaggccc
     1141 agcgaaatgc ggccatccgc tccggctccg gtcgccagca ccaatggcac gacccccagc
     1201 ccgaaggcaa acgacgtcat caaaatcggc cggaaccgtg agcgcgctgc gtcgatcgcg
     1261 gcttcgcgga tcggcttgcc gtgcataatt cggccttcgc gggccatctc gacgatcagg
     1321 atgccgttct tcgccgacag cgcgatcatc aggatcaggc cgatctgggt gtagaggttg
     1381 ttggcgaccc cgaggctggt cagagcgatg accggcccca gcagtgccaa tggcaccgcc
     1441 gacaacaccg ctaatggcaa gatccagctc tcgtactggc cggcgaggca gagatagacc
     1501 agcagcaccg acaatccgaa taggtaatag agctggttgc cggtcaattt ttcctgaaag
     1561 gacatcgccg tccattgata gccgacatcg ctcggcaatg ttctcttcgc gatgtcttcc
     1621 attgccgtca gcgactggcc cgagctgacg ccgcgggcgg gcgcgccgat aatcgtagca
     1681 gacggataga gattatacag cgtgatgagc gacggcccga cctcctcgcc gagatgcgcg
     1741 actgcgccga tcggcaccat ctggttatcc gagctgcgga catagaggtt caacagatca
     1801 tcaggctgta gccggaactg tgactctgcc tgcacgtaaa cctggaatac ttggccaaat
     1861 ttgttgaact gattgacaaa cgtcgacccc aaataggagg agagagcgga aaacacgtcg
     1921 ccgaccgaga cacgcaaggt ctgcgcccgg gctcggtcca cggtcaccga gacgtgcggg
     1981 ccgcccgggc tgaacgtcgt cagcacatgc tgcaattgcg gattggccgt ggcctgtttg
     2041 accagctgct gggtgacctc atccagcttc tgataattgt agctgccacc gagcagctcg
     2101 agctgcattt gaatgccgcc ggcattgccg ataccctgga tcggcggcgg cggcacgatg
     2161 aaaagccggc cgtcgggagc cgc
//
LOCUS       DASQCV010000030         2051 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3156174, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000030 DASQCV010000000
VERSION     DASQCV010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2051)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2051)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2051
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3156174"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..800
                     /locus_tag="VEQ16_00375"
     CDS             3..800
                     /locus_tag="VEQ16_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HYP62306.1"
                     /translation="MKEQNIAQARGLIEGLVAAQKPDLIALPEIWTCLGGTRAQKFAA
                     AEALPEPGGQGGEAYEFLRSIAMTHNIHVHGGSIGELKGDKLYNTSLVFNPAGEELAR
                     YRKIHLFDITTPDGQGYRESATYGDGQEVVTCMVGETRVGLAICYDLRFPELFLALRR
                     AGAELIILPAAFTLQTGKDHWEVLLRARAIETQCWFAAPACTGAHKEGCSGETRYTYG
                     HSLIADPWGHVVAKASDGVGWAVATIDKSFMARVRANMPVLEHRKLA"
     gene            886..1644
                     /locus_tag="VEQ16_00380"
     CDS             886..1644
                     /locus_tag="VEQ16_00380"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019674 - NAD metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HYP62307.1"
                     /translation="MKLSFVAASSPGPEEARARLVARYGDASAKEADVIVALGGDGLM
                     LETLHRVLGTPMPVYGMNCGSVGFMMNEFNEEDLPGRITRAHPAVLHPLRMHAVTASG
                     VVEEAMALNEVSLLRQARQAAKIRISVDHTERLHELICDGVLISTPAGSTAYNLSAHG
                     PIIPLSANLLPLTPISAFRPRRWRGALLPSTVDVLFEVLESEKRPVAAVADFTEVRDV
                     VSVAVSEDRSLGATVLFDPDRALSERIIAEQFTV"
     gene            1712..>2051
                     /locus_tag="VEQ16_00385"
     CDS             1712..>2051
                     /locus_tag="VEQ16_00385"
                     /inference="COORDINATES: protein motif:HMM:NF014697.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00366 family protein"
                     /protein_id="HYP62308.1"
                     /translation="MDAGQQVPAQRSISPLARVTSAFVYMFERLLPDPFVFAVLLTLL
                     TAVLAFVFAPKNSLPDVLGGWYDGIFKIFPFAFQMVLILVTGYALTSSKPVSAALRWL
                     ASLPKTPREAV"
BASE COUNT          340 a          645 c          665 g          401 t
ORIGIN      
        1 aggtgaagga gcagaacatc gcccaggcgc gcggcctgat cgaggggctg gtggcggcgc
       61 aaaaacccga cctcatcgct ttgccggaaa tctggacctg cctcggcggc accagggcgc
      121 aaaaattcgc cgctgccgag gcgttgcctg agccgggcgg gcaggggggc gaggcctatg
      181 aattcctgcg cagcatcgcc atgacgcata atattcacgt gcatggtggc agcatcggcg
      241 agttgaaggg tgacaagctc tacaacacgt cgctcgtctt caacccggct ggcgaggagc
      301 tggcgcgcta tcgcaagatc catctcttcg acatcaccac ccccgacggc caaggctaca
      361 gggagagcgc cacttatggc gacggccagg aggtagtcac ctgcatggtc ggtgaaaccc
      421 gcgtcgggct cgccatctgc tatgatctgc gttttccgga actcttcctt gccttgcgcc
      481 gcgccggcgc ggaattgatc atcctgcccg ccgccttcac gttgcagacc ggcaaggacc
      541 attgggaagt gctgctgcgc gcccgcgcca tcgagacgca gtgctggttc gctgctcccg
      601 cttgcaccgg tgcgcacaag gaagggtgca gcggcgagac gcgctatact tacggccatt
      661 ccctcatcgc cgatccatgg ggccatgtcg tggccaaggc atccgacggg gtgggatggg
      721 ccgtggcgac catcgataaa tcattcatgg cccgggtgcg cgccaatatg ccggtgctcg
      781 agcatcggaa gctcgcatga ggcgcatggg gctggtgggg cggccatgcg cccaggacaa
      841 gtggcgcatg gggctggtgg ggcggccatg tgcccaggaa aaatcatgaa gctgtccttc
      901 gtcgccgcgt cctcgccagg acccgaagag gcacgggcgc gactggtcgc ccgctatggc
      961 gatgcgtcgg ccaaggaggc ggatgtcatt gtcgcattgg gcggcgatgg gttgatgctg
     1021 gagacgctgc atcgcgtgct cggcacgccg atgccagtct atggcatgaa ttgcggctct
     1081 gtcggcttca tgatgaacga gttcaacgag gaggatctgc ccggccgcat cacccgcgcc
     1141 catcctgccg tgctgcatcc tctgcgtatg cacgccgtca ccgcctccgg cgtcgtggaa
     1201 gaggcgatgg cgctcaatga ggtgtcgctg ctgcgccagg cgcgccaggc ggcgaaaatc
     1261 cgcatctctg tggaccatac ggagcggctg catgagctga tctgcgatgg cgtgctgatt
     1321 tccacgcccg cgggctccac tgcctataat ctctccgcgc acggccccat catcccgctt
     1381 tccgctaatc ttctaccact cacccccatc tcagccttcc gcccgcggcg ctggcgtggc
     1441 gcgctgctgc cttccaccgt ggatgtgctg ttcgaggtgc tggaatccga gaaacgcccc
     1501 gtcgcggcgg tggcggattt caccgaggtg cgcgatgtcg tctccgtggc ggtgagcgag
     1561 gataggagcc tgggggcgac cgtgctgttc gaccccgacc gcgcgctttc cgagcgcatc
     1621 atcgcagagc agttcaccgt ttagcgtgtc ttgtaaatcc gccctgcggg cccaaactgc
     1681 ccctcattaa aaacgacagg ggcgtaaatc catggatgca gggcagcaag tgccggcaca
     1741 gcgcagtatc tcgcctttgg cccgggtgac gagtgcgttc gtctatatgt tcgagcggct
     1801 gctgccggac ccgtttgtgt tcgccgtgct gctcacgctg ctcactgccg tgcttgcctt
     1861 cgtctttgcg ccgaagaaca gcctgccgga tgtgcttggc ggctggtatg acggcatctt
     1921 caagattttc ccctttgcct tccagatggt gctcatcctg gtcacgggct atgcgctgac
     1981 cagttcgaag cctgtctcgg cggcgttgcg ctggcttgcg agtttgccga aaaccccgcg
     2041 cgaggcggtg g
//
LOCUS       DASQCV010000031         4072 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1996093, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000031 DASQCV010000000
VERSION     DASQCV010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4072)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4072)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4072
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1996093"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            9..167
                     /locus_tag="VEQ16_00390"
     CDS             9..167
                     /locus_tag="VEQ16_00390"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP62309.1"
                     /translation="MLGTGTGSELRHPLGVAIVGGLMVSQVLTLFTTPAIYVAFDSLS
                     QRLKRAPS"
     gene            164..3460
                     /locus_tag="VEQ16_00395"
     CDS             164..3460
                     /locus_tag="VEQ16_00395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP62310.1"
                     /translation="MNISSIFIRRPVATILLTLGIAMSGILGFVRMPVAPLPQIAFPT
                     IQVQANMAGGSPETMASTVAAPLERHLGSIADVTEMTSQSGVGNTRITLQFGLDRNLN
                     GAARDVEAAIQAARADLPTTLRANPTYEKFNPAEAPIMVLALTSSTLTPAQLYDSADS
                     VLEQQFSQISGVGDVELGGAALPAVRVELEPGPLATYGIGLEDVRAAIAAANANAPKG
                     YFNAAGTRYQIYTNDQATVASQYKDLVIAYRKGQAVRLRDVAQVLDSVENLQNAGFYN
                     GKQAVIVVIHPSPNANVIKTVDAIKALLPQLRAALPPAVNINVAMDRSVSIRAALGDT
                     ERTLFIAVLLVVGVVFVFLRSPRATLIPGLAVPISIIGTFGPMYLLGFSIDNLSLMAL
                     TIAVGFVVDDAVVVTENTMRHLEAGMSPREAALRGGAEVSFTVLSMSASLVAVFLPIL
                     LMPGLLGRLFQEFAETLSIAILISLLVSLTTTPMLCSLLLRPEAAHGQSRSRFINWLE
                     SGFEAARGAYESSLRWALRHARLVGFSLILTIILNIVLFVVVPKGFFPEQDNGLLIGS
                     VTADQAISFDAMKQKLLQLQTIIQNDHGVAAVAGFTGGRATNSAFLFVTLKPLNERHA
                     NATQIVARLRRPLSKIAGAQTFLVPAQDLRVGGRQSNAEYQYTLQSDDTEALYEWTPK
                     IVAALQKDKTLVDVNSDMQQGGLETDIKINRSRAAQYGLTPQQIDETLYDAFGQRTVS
                     TIYNELNQYEVVMEFAPKYQQTPADLARIYISTSGGSASGTSSTQLAAGSVSTSTSTT
                     ASSTTSTVALDSATNAAINSIAASGHSSGSSGAAVSTNQETMVPLSAVAGFEAGTTPI
                     SVNHQGGWAAATISFSLPQGVALSQGAAAIKKTMADLDVPLSITGSFAGTAAAFQSSS
                     SSEPLLILAALATVYIVLGILYESTIHPLTIISTIPSAGLGATLFLLVLNTPLTIIAL
                     IGVILLIGIVKKNAILMIDFALQLERGENLPPEEAIFRAASLRFRPILMTTFAAIFGA
                     MPLALALGQGASLRQPLGLTIIGGLAVSQALTLYTTPVVYLWLDRLGAKLRGGQDKAA
                     PRSGSIVEAL"
     gene            3457..>4072
                     /locus_tag="VEQ16_00400"
     CDS             3457..>4072
                     /locus_tag="VEQ16_00400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HYP62311.1"
                     /translation="MRRLCLLSLLALSSCMVGPDYHKPVIAVPAAFKTAPGWVPAAPN
                     DGAPKGDWWTAFNDPVLDQLMPQVAVNNATVKADYYAYMQAADLVREAQGQLYPTLTI
                     TPSFTRASGSSSGASTSSSGLISSGPSNSGTFEGQASWVPDIWGKVRRQVQESSAAAQ
                     VSAADFANATLSAQAALAQDYVSLRTQDATIALFQQTVAAYQRSL"
BASE COUNT          683 a         1352 c         1260 g          777 t
ORIGIN      
        1 tcccgctgat gctgggcacc ggcaccgggt cggagctgcg ccacccgctg ggcgtcgcga
       61 tcgtcggcgg cctgatggtg agccaggtgc tcaccctctt caccaccccg gccatctatg
      121 tggcgtttga cagcctgtcg cagcgtttga agcgcgcgcc gtcatgaata tctcctccat
      181 cttcattcgc cgccctgtcg cgaccatcct gctcaccttg ggcatcgcga tgtccgggat
      241 tctcggcttc gtgaggatgc cggtggcgcc gctgccgcag atcgcttttc ccaccatcca
      301 ggtgcaggcc aacatggcgg gcggcagccc ggagacgatg gcctccaccg tggcagcacc
      361 tttggagcgg catctcggca gcattgccga cgtgacggag atgacctcgc aatcgggcgt
      421 cggcaatacg cgcatcacgc tgcaattcgg gctggaccgc aacctgaatg gcgccgcgcg
      481 cgacgtggag gcggcgatcc aggccgcgcg cgcggatctg ccgaccacgc tgcgcgccaa
      541 cccgacctat gaaaaattca acccggctga agcaccgatc atggtgctgg cgctcacctc
      601 cagcacgctg acgccggcgc agctttatga ttccgcggat tccgtgctgg agcagcaatt
      661 ctcgcaaatc tccggcgtgg gcgatgtgga gcttgggggc gctgcgctgc ccgccgtgcg
      721 cgtggagctg gagccggggc cgctcgccac ctatggcatc gggctcgagg atgtgcgcgc
      781 cgccatcgcc gcggccaacg ccaatgcgcc gaaaggctat ttcaacgccg ccggcacgcg
      841 ctaccagatt tacaccaacg accaggcgac ggtggcgtcg caatataagg atctcgtcat
      901 cgcctatcgc aagggccagg cggtgcggct gcgtgacgtg gcgcaggtgc tggattcggt
      961 tgagaatttg cagaatgccg gcttctataa cggcaagcag gcggtgatcg tcgtcatcca
     1021 tcccagcccg aatgccaacg tcatcaagac ggtcgacgcc atcaaggcgc tgctgccgca
     1081 actgcgcgcg gccttgccgc cggcggtgaa catcaatgtc gccatggatc gcagcgtctc
     1141 catccgcgcc gcattaggtg ataccgaacg cacgctcttc atcgccgtgc tgctggtggt
     1201 gggggtggtg ttcgtgtttc ttcgttcgcc gcgcgcgaca ctcattcccg gcctcgccgt
     1261 gcccatctcc atcatcggca cgttcgggcc gatgtatctg ctgggcttct ccatcgataa
     1321 tctctcgctg atggcgctca ccatcgcggt gggtttcgtg gtggatgacg cggtggtggt
     1381 gaccgagaac acgatgcgtc atctcgaagc cggcatgagc ccgcgcgagg cggcgttgcg
     1441 cggcggcgcg gaggtgagct tcacggtcct ctcgatgagc gcctcgctcg ttgccgtgtt
     1501 cctgcccatt ctgctgatgc cggggctgct gggccgtctg ttccaggaat ttgccgagac
     1561 tttgtcgatt gccatcctca tctcactgct cgtctcgctc accacgacgc cgatgctgtg
     1621 cagcctgctg ctgcgcccgg aggcggcgca tggccagagc aggtcgcgct tcatcaattg
     1681 gctggaatcc ggcttcgaag cggcgcgcgg cgcctatgaa agctcgctgc gctgggcgct
     1741 gcgccatgcg cggctggtgg gattctcact cattctcacc atcatcctca acatcgtgct
     1801 gttcgtggtg gtgccgaaag ggtttttccc cgagcaggat aatggtttgc tcatcggcag
     1861 cgtcaccgcc gaccaggcca tctccttcga cgccatgaag cagaaattgc tgcagctgca
     1921 gaccatcatc cagaatgatc acggcgtcgc tgcggtggcg ggcttcaccg gcggccgcgc
     1981 caccaacagc gccttcctgt tcgtcacgct caagccgctg aacgagcgcc atgccaacgc
     2041 cacgcaaatc gtggcgcggc tgcgccggcc tttgtccaag attgccgggg cgcaaacctt
     2101 cctggtgccg gcgcaggatt tgcgcgtcgg cgggcgtcag tccaatgccg aatatcaata
     2161 cacgctgcag agcgacgata ccgaggcgct ctatgaatgg acgccgaaga tcgtcgccgc
     2221 gctgcagaag gacaagacgc tggtcgatgt gaattcagac atgcagcaag gcgggctgga
     2281 gacggatatc aagatcaacc gctcccgcgc cgcgcaatat ggcctcaccc cgcagcagat
     2341 cgacgagacc ttgtacgatg cgttcgggca gcggactgtc tcgaccattt ataacgagct
     2401 gaaccagtat gaggtggtga tggaattcgc ccccaaatac cagcagacgc cagctgacct
     2461 cgcgcgcatc tatatctcca cctctggcgg ttcggcgagc ggcacgtcct ccacccagct
     2521 tgccgcgggc agcgtgagca cctccacaag cacgaccgcc agcagcacga cctctaccgt
     2581 ggcgttggat tccgcgacga atgcggcgat caactccatc gctgcgagcg gccattcttc
     2641 cggctcctcg ggcgccgcgg tgagcaccaa ccaggagacg atggtgccac tctccgccgt
     2701 tgccggcttc gaagccggca ccacgcctat ttcggttaat caccagggcg gctgggcggc
     2761 ggccaccatc tccttctcgc tgccgcaggg ggtggcgctg agccagggtg ctgccgccat
     2821 caagaaaacc atggcggatc tcgatgtgcc gctctccatc accggcagtt tcgccggcac
     2881 ggcggcggcg ttccagtcct catccagctc cgagccgctg ctgattctcg ccgccctggc
     2941 cacggtctat atcgtgctcg gcattctcta tgagagcacc atccacccgc tcaccatcat
     3001 ctccaccatt ccctcggcgg ggctgggcgc taccttgttc ctgctggtgc tgaatacgcc
     3061 gctcaccatc atcgcgctca tcggcgtcat cctcctcata ggcatcgtga agaagaatgc
     3121 gattctgatg atcgacttcg cgctgcagct tgagcgcggt gaaaatctgc cgccggagga
     3181 agccatcttc cgggctgcct cgttgcgttt ccggccgatt ctcatgacga cattcgccgc
     3241 cattttcggt gccatgccgc tggccctcgc gctggggcag ggggcgagcc tgcgccagcc
     3301 gctcggcctc accatcattg gcggcctggc ggtgagccag gctttgacat tgtacaccac
     3361 gcccgttgtc tatctgtggc tcgaccggct cggcgcgaaa ttgcgcggcg ggcaggacaa
     3421 ggcggcgccg cgttcgggaa gtattgtgga ggctctatga ggcggctttg tcttttatcg
     3481 ctcctggcct tgtcctcctg catggtgggg ccggattatc acaagccggt catcgccgtg
     3541 ccggccgcct tcaagaccgc gcccggctgg gtgccggccg cgcccaatga cggtgcgccg
     3601 aaaggcgatt ggtggaccgc tttcaacgat ccggtgctgg accagctcat gccgcaggtg
     3661 gcggtgaata atgccacggt gaaggcggat tattacgcct atatgcaggc agcagatctg
     3721 gtgcgcgagg cgcaagggca gctctatccc acgctcacaa tcacccccag cttcacgcgt
     3781 gccagcggga gctccagcgg cgccagcacc tccagctccg gccttatcag cagcgggccg
     3841 agcaattccg gcacattcga gggccaagcg agctgggtgc ccgatatctg gggcaaggtc
     3901 cgccgccaag tgcaggagag cagcgctgcg gcgcaggtga gtgccgcgga cttcgccaat
     3961 gccacgctga gcgcccaggc ggctttggca caggattatg tcagtctgcg cacccaggac
     4021 gcgacgatcg ccctcttcca gcagacggtc gcggcctatc agcgcagcct gc
//
LOCUS       DASQCV010000032         1610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1830037, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000032 DASQCV010000000
VERSION     DASQCV010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1830037"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VEQ16_00405"
     CDS             complement(<1..245)
                     /locus_tag="VEQ16_00405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62312.1"
                     /translation="MSTQEDYLNEPPRKQGMSSTAKVLIVLGSIAGVCLLACCGGVVF
                     FVYKAKDAFQIATDAADIQQRAQKIIHITVPDDFAPA"
     gene            complement(326..>1610)
                     /locus_tag="VEQ16_00410"
     CDS             complement(326..>1610)
                     /locus_tag="VEQ16_00410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62313.1"
                     /translation="TCAWGQVLWKEYPGMGARFAGSQRLGDRRRRRLAVETEELSEIA
                     EASNRLRAPAGKTRIPDEAHADQRPGDSVRIDALPIAAVVPRQWWHYLIGAMACLLVA
                     GGLILGGIRITASTHAAGGAMASLFALPQGRIAGWFSSLLLILAAQLALLIWWVRSQS
                     LKDFDGHYRLWIRVAFLWTAVSLGTATNGPEAIQQVVQSCCGSKAGGYSHLGWLIPAL
                     LASLWVFWTVAAEMRGCLWSRWLLRVSVACHTAAAAVYLEPYQAVPADARDLWLAILI
                     LAGHVGIFLSMWLHARHVIYCTSEPAARRPSSWRIPRPHFGMPAMRLPRSRRRNRPTT
                     KPEPVATEPSPHVGEAPQPAARHSIEKPPPIAPVELSTLVPERGAESSAEVDPAQAQD
                     VETREPAKPDLRGLSKKQRRRVLQELRDRERAAGQ"
BASE COUNT          312 a          517 c          502 g          279 t
ORIGIN      
        1 tgggccggcg cgaagtcgtc gggaaccgtg atgtgaatga ttttctgggc gcgctgttgg
       61 atgtcggcgg catcggttgc gatctggaaa gcatctttcg ccttgtacac aaaaaagacg
      121 acgccaccgc agcaggccag caggcacacg ccggcaatcg atcccagaac aatcaggacc
      181 ttggcggtcg agctcatgcc ctgcttgcgc ggcggttcgt tcagataatc ttcctgcgtc
      241 gacatattgg agctttctca aacaagacgt cccacaaact ggtgatgcta caatagcagc
      301 agcatcggtg gattcgcaat cgtcgctatt ggcctgcggc gcgctcgcga tcccgaagct
      361 cctggagcac gcgccgccgc tgcttcttgc tcaggccgcg caaatcgggt ttggccggct
      421 cgcgagtttc gacatcctgg gcttgggcgg ggtcaacctc ggcagacgat tccgcgccgc
      481 gttcgggaac cagtgtcgag agctcgaccg gtgcaatcgg cgggggcttt tcgatcgaat
      541 gccgcgcggc cggctgcggc gcttccccga cgtgagggct gggttcggtg gcaaccggct
      601 caggttttgt cgtgggccgg tttcgccggc gagagcgggg caatcgcatt gccggcatac
      661 cgaagtgtgg acggggaatc cgccaggacg aggggcgcct cgccgccggt tcagaagtac
      721 agtagatcac gtggcgcgca tgcagccaca tgctgaggaa gatcccgaca tgcccggcca
      781 gaatcaggat tgcaagccat agatcacggg cgtccgccgg gaccgcctga taaggttcaa
      841 ggtatacggc ggcggcggcc gtatggcagg ccacgctcac ccgcagcagc caccggctcc
      901 agaggcaccc tctcatctct gccgcgactg tccagaaaac ccagagcgat gccagcagcg
      961 ccggaatcag ccagccgaga tgcgaatatc cgccggcttt gctgccgcaa caggattgca
     1021 ccacctgctg tatcgcttcg ggaccattgg ttgccgtgcc gaggctgact gcagtccaca
     1081 agaaggcaac tcgaatccac agccggtaat gcccgtcgaa gtctttgaga ctctgtgagc
     1141 gcacccacca gattaaaagc gccagttgcg cggcgaggat cagcaacagg ctcgagaacc
     1201 acccggcaat tctcccctgc ggaagggcaa acagggaggc catcgcgccg cctgccgcgt
     1261 gcgtcgacgc cgtgatcctg atgcctccca gaataagccc gccagcaacc agcagacacg
     1321 ccatcgcccc gatcagatag tgccaccatt gacgcgggac cactgcggca atgggcaagg
     1381 cgtcgatgcg gaccgagtcg cccgggcgct gatcagcgtg cgcttcgtcg gggatcctgg
     1441 tctttccagc cggcgcccgc aggcgattgc tggcctcggc aatctccgaa agttcttccg
     1501 tctcgaccgc caggcggcga cggcggcgat cccccaggcg ctgcgatcct gcgaagcgtg
     1561 cccccatccc tggatactct ttccaaagaa cctggcccca agcgcatgta
//
LOCUS       DASQCV010000033         1657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2493741, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000033 DASQCV010000000
VERSION     DASQCV010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2493741"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(31..1533)
                     /locus_tag="VEQ16_00415"
     CDS             complement(31..1533)
                     /locus_tag="VEQ16_00415"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
                     /protein_id="HYP62314.1"
                     /translation="MIGQSTAFSGALMVLARLISRVIDLMTMLILARMLVPADFGLVA
                     IAMTVVSILEAALELPLSEAMVRLPELKQSHYDTAFTLGLLRGLLICALVSAIAVPFA
                     NFYGHKQLVPLIAFLSLAPAARGLLNPRLAYYAKNLNFAYEFRFELVGKIAAFLISVA
                     TALLTHSYWSIAVCTVGGPLVIALQSYVLFPFRPRLTLVEWRKFVDFLGWITLSQIVL
                     AITWQSDQLLLGKVVRPAQLGLFSIANNVTNIPLAALFGPLLRPLLSAFTMLRDDRIR
                     LQNSFQSAASAVVAIGLPILVGQSLVAGPMVRLLLGPKWLGAIPFVSLLDYSLIPVLF
                     GMLLTPLSMAQGETRAMLWRNMVQMCVKLPLVIAGALLYGFMGVIAARIVSEIVTAFY
                     CMVIIRHLCGLPVARQFFGCWRSVAAVLFMAGVLKMTNAYFGSEKQMIWVAVQLFTEI
                     AIGAVAYAGCLLFLWLLAGKPQGLETLVLRLLAGLRQRLARRSAGVAPLT"
BASE COUNT          394 a          498 c          522 g          243 t
ORIGIN      
        1 cgacgcaatc acgtagcttt ttccaaaaac tcatgtcaaa ggtgccacgc cggccgagcg
       61 gcgcgcgagc cgctggcgca ggcccgcgag caggcgtagc acaagcgttt ccagcccctg
      121 cggtttgcct gccagaagcc agaggaaaag caggcagccc gcataggcca cggcaccgat
      181 tgcgatctcc gtgaagagtt gtaccgccac ccagatcatt tgcttttcag aaccgaaata
      241 ggcgtttgtc atcttgagaa cgcctgccat gaacagcacc gcggcaacac tgcgccagca
      301 gccaaaaaat tgccgtgcca cgggaagccc gcaaagatgc ctgatgatga ccatgcaata
      361 aaaggccgtc acaatctcgg agacgatgcg ggcggcgatg acgcccatga agccgtagag
      421 cagcgcgccg gcgatgacga gcggcagctt cacgcacatt tgcaccatgt tgcgccagag
      481 catggccctg gtctcaccct gcgccatgct caacggcgtg agcagcatgc cgaagagcac
      541 cgggatgagg ctataatcca gcagcgatac gaaagggatg gcgcccagcc atttcggccc
      601 cagcagcagc ctcaccatgg ggccggcgac aaggctctgc ccgactagaa tgggcaggcc
      661 gatggcgacc acggcactgg cagcgctctg aaaactattc tgcagccgta tgcggtcgtc
      721 gcgcagcatg gtgaaggccg aaaggagcgg gcgcagaagc ggcccgaaca aggccgcaag
      781 cgggatattg gtgacattat tggcgatgct gaacaggccg agctgggccg gacgcaccac
      841 cttgccgagc agcagctggt cggattgcca ggtgatggcg aggacgattt gcgacagggt
      901 gatccagcca agaaaatcca cgaatttccg ccattccacc aaagtgagac gtggacggaa
      961 cggaaacagc acataggatt gcagcgcgat gaccagaggg ccgccgacag tgcagacggc
     1021 gatggaccaa taggaatgcg taagaagggc cgtcgccacg ctgatgagga aagccgcaat
     1081 cttgcccacc agctcaaaac ggaattcata cgcgaaattg agattcttcg cgtaataagc
     1141 cagcctcgga ttgagcagcc ccctggcggc cggggccagg ctgagaaagg cgatgagcgg
     1201 cacaagctgc ttatggccat agaaattcgc aaacggcacg gcgatggcag aaaccaaggc
     1261 acagatcagc aacccgcgca gcagccccag cgtgaaggcg gtatcgtaat gggattgctt
     1321 gagttccggc agccgcacca ttgcctcgct cagcggcaat tccagcgccg cctccaggat
     1381 cgagacgacg gtcatggcga tggcgacgag gccgaaatca gccggcacga gcatgcgcgc
     1441 caggatgagc atcgtcatca ggtcgatcac acggctgatc agccgcgcca gcaccatgag
     1501 cgcgccgctg aaggcggtgc tctggccgat catgcgatgg ctttcgccgg tggcgggctc
     1561 acaagctccg gcagggcagc ctccagcgcg gttccggaga ggcggcgcgt caacaccgcg
     1621 gggttgccgg cataaagccc gtccggttcc gtggagc
//
LOCUS       DASQCV010000034         1941 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_172273, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000034 DASQCV010000000
VERSION     DASQCV010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172273"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            42..830
                     /gene="fabI"
                     /locus_tag="VEQ16_00420"
     CDS             42..830
                     /gene="fabI"
                     /locus_tag="VEQ16_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008943505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004318 - enoyl-[acyl-carrier-protein]
                     reductase (NADH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HYP62315.1"
                     /translation="MSDENLAHLFSLTGKRGLVLGIANEHSIATGCARAFAACGATLA
                     ATYLNGKARPYVEAVTNSLPCDILLPCDVHEPGALEAVFAEIKQRWGRLDFLLHSIAF
                     APAEDLRGRVVDSSAAGFALAMDISCHSFLRAAHLAAPLMPEGGCLLAVSYLGSQRVV
                     PNYNLMGPVKAALESAVRYAAAELGPQDIRVHAISPGPIATRASSGIPHFDDLLTTAV
                     REAPARRLATIEECGGLAAFLVSDAAKMLTGTVIPIDGGQHLLA"
     gene            847..>1941
                     /locus_tag="VEQ16_00425"
     CDS             847..>1941
                     /locus_tag="VEQ16_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYP62316.1"
                     /translation="MTEDSDLRDFDRTLHAMQARFSGGLSPASVALAVADWAMHLSGQ
                     PGRRLALGHQLGADWAALTRQVLGLPTETLVPAPGDRRFIDPGWQHGPAAFAMQAFLR
                     AERFWDSATTAIPGVARESERIVNFTARQLMDMMAPSNIPALNPEVLTKTQTTYGENL
                     RDGAQHFIADLRAAGGAASQPLPMEPGREVAVTPGAVIFRNELIELLQYSPATETVHP
                     EPILIVPAWIMKYYILDLSPQNSMVRYLTAQGFTVFCISWVNPDASLRDTGMDDYRRL
                     GIMAALDAITAICGEQKIHATGYCLGGTLLAITAATMARDHDDRLATITLLAAQTDFT
                     EAGELQLFINESQLAYLDDAMWDQGYLDSSQ"
BASE COUNT          308 a          748 c          537 g          348 t
ORIGIN      
        1 cgcccggccg aggctgtgca ccggcgggac cgcgacgctt catgagtgat gaaaatttgg
       61 ctcatttgtt cagcctgacg ggcaagcgcg gtctcgttct cggcatcgcc aacgagcaca
      121 gcatcgccac cggctgcgcc cgcgccttcg ccgcctgcgg cgccacgctc gccgccacct
      181 atctcaacgg caaggcccgc ccctatgtgg aggcggtcac caatagcctg ccatgcgaca
      241 tcctgctccc ctgcgatgtg catgagccgg gcgcgctgga agctgtattt gccgaaatca
      301 agcagcgctg gggccggctc gatttcctgc tccattccat cgccttcgcc ccggccgagg
      361 atctgcgtgg ccgcgtggtg gacagttccg cggccggctt tgccctcgcc atggatattt
      421 cctgccactc ctttctccgc gccgcgcatc tcgccgcgcc gctcatgccg gaaggaggct
      481 gcctgctggc tgtcagctat ctcggctccc agcgcgtcgt gcctaattat aacctcatgg
      541 gcccggtcaa ggcggcgctc gaaagcgcgg tgcgctatgc cgccgccgaa ctcgggcccc
      601 aggatatccg cgtgcacgcc atctcgcccg ggcccatcgc cacccgcgcc tccagcggca
      661 tcccgcattt cgacgatctg ctgaccaccg ccgtccgcga ggccccagcc cgccgcctcg
      721 ccaccatcga ggagtgcggc ggcctcgccg ccttcctcgt ctcggatgcc gcgaaaatgc
      781 tcaccggcac cgtcattccc atcgatggcg gccagcatct gctcgcctga ccctggagcc
      841 cgcaacgtga ccgaagactc tgacctgcgc gatttcgacc gcacattgca cgccatgcag
      901 gcgcgcttca gcggcggcct ctcccccgcc tctgtggcac tcgccgtcgc cgactgggcc
      961 atgcatctct ctggccagcc cggccgccgg ctcgccctcg gccaccagct tggcgccgac
     1021 tgggccgccc tcacccgcca ggttttaggc ctgcccacgg aaacgcttgt ccccgccccc
     1081 ggagaccgcc gcttcattga ccctggctgg cagcacggcc ccgccgcctt cgccatgcag
     1141 gcctttctgc gcgcagaacg attctgggac agtgccacca ccgctatccc cggtgtcgcc
     1201 cgcgagagcg agcgcattgt caatttcacc gcgcgccagc tcatggacat gatggcgccc
     1261 tccaacattc cggccttgaa tccggaagtg ctgaccaaaa cccagaccac ctacggcgaa
     1321 aatctgcgcg acggcgcgca gcatttcatc gcagacctgc gcgcggccgg cggcgccgcg
     1381 tcccagcctc tgcccatgga gcccggccgc gaggtcgccg tcacgcccgg cgccgtcatc
     1441 ttccgcaacg agctgatcga gttgctgcaa tacagccccg ccaccgagac ggtccacccc
     1501 gagcccatcc tcatcgtgcc ggcctggatc atgaaatatt acattctcga tctatcgccg
     1561 cagaactcga tggtccgcta tctcaccgcc caaggtttta cggttttctg catttcctgg
     1621 gtcaatccgg atgcgagcct gcgcgatacc ggcatggatg attatcgccg ccttggcatc
     1681 atggcggcgc tggatgccat caccgccatt tgcggggagc aaaaaatcca cgccaccggc
     1741 tattgcctcg gcggcacgtt gctcgccatc accgccgcca ccatggcgcg cgaccatgat
     1801 gaccgcctcg ccaccatcac tttgctcgcc gcccagaccg acttcaccga agctggcgag
     1861 ctgcagctct tcatcaatga atcccagctc gcctatctcg acgacgcgat gtgggaccaa
     1921 ggctatctcg actcctcgca g
//
LOCUS       DASQCV010000035         1812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1996766, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000035 DASQCV010000000
VERSION     DASQCV010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1812
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1996766"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..266
                     /locus_tag="VEQ16_00430"
     CDS             <1..266
                     /locus_tag="VEQ16_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014246541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYP62317.1"
                     /translation="WTLKFLEEGANHLLLGGKIPITCPVRFLHGMKDSAVPWDLSLRI
                     AAALESEAVRITFVKDGDHRLSRPEDLALLDSNLRGLLVQDGA"
     gene            complement(228..1118)
                     /locus_tag="VEQ16_00435"
     CDS             complement(228..1118)
                     /locus_tag="VEQ16_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP62318.1"
                     /translation="MNLLIFGLGYTGRAIARAAVAAGCNVTATTRGGAAPEPGVTLVP
                     FNRAQSAIEAATHVVSTAAPDEHGDPVLARYHAALEAAPHLRWLGYLSTTGVYGDANG
                     AWVDETTKPNPNVERTRRRVAAEWAWQRLTRSDDGNVLAAEDEGEEQSFAVAIFRLAG
                     IYGPGRSLFDDLRAGQGRHVLKPGHMFGRIHRDDIAQGVLAAMQAEAVGIFNFADDEP
                     AASTDVVCEAARLLGISPPPPVPFEEAIEAMSPMARSFWADNRKVSAERTKRALGIEW
                     RYPTYREGLRAILDEEAAQV"
     gene            1368..>1812
                     /locus_tag="VEQ16_00440"
     CDS             1368..>1812
                     /locus_tag="VEQ16_00440"
                     /inference="COORDINATES: protein motif:HMM:NF024189.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YXWGXW repeat-containing protein"
                     /protein_id="HYP62319.1"
                     /translation="MRQMRFATPLMLGLAAATIPFMPPPAHAQIVMGTSITIAPPILP
                     VYEQPPIPAPGYIWVPGYWAWGPGGYYWVPGTWVLPPEPELLWTPAYWGWDDGAYVYH
                     AGYWGPHIGFYGGINYGFGYTGEGYEGGYWRGGAFFYNRTVNNITN"
BASE COUNT          327 a          614 c          565 g          306 t
ORIGIN      
        1 cctggacgct gaaattcctc gaagaaggcg ccaaccacct actcctgggc ggcaaaatcc
       61 ccatcacctg ccccgtgcgc ttcctgcacg gcatgaagga cagcgccgtg ccctgggacc
      121 tctcgctccg catcgcagcc gcgctggaga gcgaggcggt acgcattacc ttcgtgaagg
      181 atggcgacca tcgcctgtcg cggcccgagg acctcgcttt gctcgactca aacctgcgcg
      241 gcctcctcgt ccaggatggc gcgtagaccc tcccggtagg tcggatagcg ccattctatc
      301 cccagggcgc gcttggtgcg ctccgccgaa accttccggt tatccgccca gaaggagcgg
      361 gccatgggcg acatcgcctc tatcgcctct tcaaacggca caggcggcgg cggcgagatc
      421 ccgagcagcc gggccgcctc gcagaccacg tcggtgctcg cggcgggctc atcatcggca
      481 aaattgaaga tgccaacggc ctcggcctgc atggcggcga gcacaccctg ggcgatgtcg
      541 tcgcgatgga tacgcccgaa catatggccg ggcttgagca catgccgccc ctgccccgcc
      601 cgtaaatcat cgaacaaaga gcgccccggc ccataaatcc cggcaaggcg gaaaatggcg
      661 acagcgaaac tctgctcctc cccctcatcc tcggcggcaa gcacattgcc atcatcggaa
      721 cgcgtcagac gctgccaggc ccattccgcg gccacgcggc ggcgggtgcg ctctacattg
      781 gggttgggtt tggtggtctc atccacccag gcgccattgg catctccata cacgccggtg
      841 gtggagagat agccaagcca gcgcagatgg ggtgctgctt ccagcgcggc gtgatagcga
      901 gccaagaccg ggtcgccatg ctcgtccggg gcggcggtgg agacaacatg ggtggcggcc
      961 tcgatggcgc tttgcgcgcg gttgaagggc accaaggtca cgcccggttc gggtgcggcc
     1021 ccgccccttg tcgtggcggt aacattgcag ccggcggcca cagcggcccg tgcgatggcg
     1081 cggccggtat agcccaggcc gaaaataagc aggttcatgg ctcaatcagc ccaagcccgg
     1141 cccgtggcgt caagtccggg ttacgaagcg ttacgaaatg ccctgaaatt gcacgatttg
     1201 tggcacgtca tcgccatgcc ggtgcggctt tatgagggcg ctggaaggtg gggtaacgcc
     1261 gatttaacag ctttgcagct atgccaaggt tgaagccgct ccgcccctca gcaagtacag
     1321 gcacggcagg gccaggccct gaaaaacgcc acgaggagaa gtgaagaatg cgccagatgc
     1381 gtttcgccac cccactcatg ctcgggctgg ccgctgccac catccccttc atgccacctc
     1441 ccgcccacgc ccagatcgtg atggggacct ccatcaccat cgccccgccc atcctgccgg
     1501 tctatgagca gccgcccatc cccgcgcccg gctatatctg ggtaccgggc tactgggcct
     1561 ggggaccggg cggctattac tgggtgccgg gcacctgggt gctgccgccg gagcctgagc
     1621 tgttgtggac gcccgcctat tggggctggg acgacggcgc ctatgtctac cacgccggct
     1681 attggggacc gcacatcggc ttctatggcg gcatcaatta cggcttcggc tacaccggcg
     1741 agggttacga aggcggctat tggcgtggcg gcgccttctt ctataaccgc accgtcaaca
     1801 acatcaccaa cg
//
LOCUS       DASQCV010000036         3695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2992009, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000036 DASQCV010000000
VERSION     DASQCV010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2992009"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1389
                     /locus_tag="VEQ16_00445"
     CDS             <1..1389
                     /locus_tag="VEQ16_00445"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HYP62320.1"
                     /translation="RQRFERGIDSQLLPAALDAATAMVQQICGGIASDITEAGARPEW
                     NRAAKLRFARIKSFGGSDISAPEAVAALQRLGFEVQEEDAASVTVAVPSWRNDVAQPQ
                     ALDQAPDLPGAMAAAEGAAAIEPEVDLIEEVLRLKGLDAITPVSLPVDRLISAPILTP
                     KQVRTALARRILAARGLLECVTFSFADDATCALFGGGSERLRLANPIAADLNQMRPTP
                     LVTLAQAASRNVSRGFGDFGLFETGPAYAEDTTQSLVATGLRCGASPLSALSPARTYD
                     ALDAKADAIAVLSALGMPMDAVTTNPGGPSYYHPGQSGALMQGPKTVLARFGALHPSL
                     CQKLDLPVGSVAFEIFLDAIQDPKRRKKSAPALPPFQPLRRDFAFLVDEKTGAEAVLR
                     AAKGAERNLITGATLFDRYQGKGVPDGQVSLAIAVTLQPVEKSLTDAEIEAVCTKIVA
                     EVGKKTGATLRG"
     gene            1407..1988
                     /locus_tag="VEQ16_00450"
     CDS             1407..1988
                     /locus_tag="VEQ16_00450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014249924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HYP62321.1"
                     /translation="MEKDRLAAFSDGVIAVIITIMVLDLKTPHEPSLAALRQVLPTFT
                     SYVLSFVYVAIYWNNHHHFFHLVKRVNGALLWANLHLLFWLSLIPFATSWLGENDNEA
                     WPAALYGMVLLFTAVAWFIMQNSIIRAQGPDSALGKAVGRDLKGKISPFLYVTGTGLA
                     FIAPHLAELFYALVALMWIIPDRRVEAKLEEAE"
     gene            complement(1992..2201)
                     /locus_tag="VEQ16_00455"
     CDS             complement(1992..2201)
                     /locus_tag="VEQ16_00455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012223668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HYP62322.1"
                     /translation="MLGVLEKRSFSLSGHRTSVALEPAFWTALEAIAAGEGIALSALI
                     TRLDAGRGENQPLASALRVFALHAK"
     gene            complement(2176..>3695)
                     /locus_tag="VEQ16_00460"
     CDS             complement(2176..>3695)
                     /locus_tag="VEQ16_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HYP62323.1"
                     /translation="GPALEETARQAGGQIALAATATASGFFAFSPTSFVGVAELGEIA
                     GAGMFIAFFCTITFLPALLTVFRPRAEMVPVGLPGGAKADAWLRRHSRLVLGFFGVMA
                     LAGMLSAVNINFDANPLDTKDPNTESMRTIRSMLADPATNPFYADMLVANLDEARALS
                     AKLSALPEVAQVLSGATFIPQQQDQKLAMLTQARSLLAPTLQAVDDPPTAQVSAADIR
                     AAMIKTRDAINQVAPQLPKDSPLLGIAAALDKLQGQDDAQIEAMNAGITRFLPSALEQ
                     FSTSLNAGPITREALPPAVAQSWFLPDGRVRVEALPSAAAQTNAGLRQFSEAVLRVAP
                     DAGGPAISTIATAGTILTSFREAALLAFTAIAVILLIVFRTIRATLLVLATLTLSSLL
                     TALFAKMAHMSINYANIIALPLLLGVGVSFNVYFVMNFRAGMRRFLSSATAHAVLFSA
                     LTTGTAFGTLAASHDRGTASMGELLFLSLGAVLIATFAFLPALLYAVDAWRAGKA"
BASE COUNT          690 a         1271 c         1165 g          569 t
ORIGIN      
        1 cgacagcgtt tcgagcgcgg catcgacagc cagctcctcc ccgccgcgct ggatgccgcc
       61 accgccatgg tgcagcaaat ctgcggcggc atagcgagcg acatcaccga agccggcgcc
      121 cgcccggaat ggaaccgcgc cgccaaactc cgcttcgccc gcatcaaaag cttcggcggc
      181 tccgacatct ccgcgcccga agccgtggcg gcgctgcaac gcctcggctt cgaggtgcag
      241 gaggaagatg ctgcctccgt caccgtcgcc gtgccaagct ggcgtaacga cgtggcgcag
      301 ccccaagcgc tcgaccaggc gcccgacctg cccggcgcca tggccgccgc cgaaggagcc
      361 gccgccatcg agccggaagt ggatctcatc gaggaggtgc tacgcctgaa agggctggac
      421 gccatcaccc ccgtatccct gccggtggac cggctgattt ccgcacccat tctcacaccg
      481 aaacaggtcc gcaccgcgtt ggcccggcgc atcctggcgg cgcgcggcct gctggaatgc
      541 gtcaccttct ccttcgccga cgacgcaacc tgcgccttgt tcggcggcgg gagcgaaaga
      601 ttgcgcctag cgaaccccat cgccgccgac ctcaaccaga tgcgcccgac cccgctggtc
      661 accctggccc aggcggcatc gcgcaatgtc tcgcgcggct tcggcgattt cggcctgttc
      721 gagaccgggc ctgcttacgc ggaagacacg acacagtcgc tggtcgccac cggcctgcgc
      781 tgcggcgcct cgccgctctc agccctcagc ccggcgcgca cctatgacgc gctggatgcc
      841 aaggccgatg ccatcgccgt gctctccgcc ctcggcatgc ccatggatgc agtcaccacc
      901 aatccgggcg ggccgtccta ctaccatccg ggccagagcg gcgcgctgat gcagggaccg
      961 aagaccgtgc tggcccgttt cggcgcgctg catcccagcc tgtgccagaa gctcgacctg
     1021 ccggtgggca gcgtggcgtt cgagatcttc ctcgacgcca tccaggaccc caagcggcgc
     1081 aagaaatccg cccctgccct gccgccgttc cagcccttgc ggcgcgactt cgccttcctg
     1141 gtggacgaaa aaaccggcgc cgaggccgtg ctgcgcgccg ccaagggtgc cgagcgcaac
     1201 ctcatcaccg gcgccacctt gttcgaccgc taccagggca agggcgtgcc ggacgggcag
     1261 gtctcgctcg ccattgccgt gacgctgcaa cccgtcgaaa aaagcctaac cgacgccgag
     1321 atcgaggcag tctgcacgaa aatcgtggcc gaggtgggca agaagaccgg ggccactttg
     1381 cgggggtaag atttgcgggg gtaagaatgg agaaggaccg gctggcggcg ttcagcgacg
     1441 gggtgatcgc ggtcatcatc accatcatgg tgctggacct gaaaaccccg catgagccca
     1501 gcctggccgc cctgcgccag gtgctgccca ccttcacctc ctatgtgctg agcttcgtct
     1561 acgtcgccat ctactggaac aaccaccatc atttcttcca tctggtgaaa cgggtgaatg
     1621 gcgcgctgct ctgggccaat ctgcatctgc tgttctggct gtcactcatc cccttcgcca
     1681 caagctggct gggcgagaat gacaatgagg cctggcccgc cgccctctat ggcatggtgc
     1741 tgctgttcac ggcggtcgcc tggttcatca tgcagaacag catcatccgc gcccaggggc
     1801 cggactccgc cctgggaaaa gccgttggcc gagatttgaa aggcaagatc tcgccctttc
     1861 tctatgtcac cggcaccggg cttgccttca tcgcgcccca tctcgccgaa ctattctacg
     1921 cgctggtggc gctgatgtgg atcatccccg accggcgggt tgaggcaaag ctggaagagg
     1981 cggaataggc gctatttcgc gtgcagcgcg aacacccgca gggccgacgc cagcggctgg
     2041 ttctcgcccc gccccgcatc gagccgcgtg atgagtgcgg acagggcgat cccctcaccc
     2101 gccgcaatcg cctccaacgc cgtccaaaat gctggctcca gcgccacgct cgtacggtgg
     2161 ccggagagcg aaaaactacg cttttccagc acgccaagca tccaccgcgt aaagcagcgc
     2221 cggcagaaag gcaaaagtgg caatcagcac cgcgcccagg ctcagaaaca gcaactcgcc
     2281 catgctggcc gtgccccggt catggctcgc cgccagcgtg ccgaaggcgg tgccggtggt
     2341 gagcgccgag aacagcaccg catgcgccgt ggcggaggag agaaagcgcc gcatccccgc
     2401 gcggaaattc atcacgaaat acacattgaa cgacaccccc accccgagca gcagcggcag
     2461 cgcgatgatg ttggcgtaat tgatcgacat atgcgccatt ttcgcgaaca gagccgtcag
     2521 cagcgacgag agggtcaatg tggccagcac cagcagtgtc gcgcggatgg tgcggaacac
     2581 gatcagcaag atcaccgcga tggcggtgaa ggcgagaagg gccgcctcgc ggaaggaggt
     2641 caggatagtg ccagcggtgg caatggtgga gatggccgga ccacccgcat caggcgccac
     2701 tctcagcacc gcctcggaaa attgccgcaa cccggcattg gtctgcgccg cggcgctggg
     2761 cagcgcttcc acccgcaccc tgccatcggg caggaaccaa ctctgcgcca cggccggcgg
     2821 tagagcctcc cgcgtgatgg ggccggcatt caggctggtg gaaaactgct ccagagcgga
     2881 gggcagaaag cgcgtgatgc ccgcattcat cgcttcgatc tgcgcgtcat cctggccctg
     2941 cagcttgtcc agcgcggcgg caatgccgag cagcggcgaa tccttcggca attgcggcgc
     3001 cacctggttg atggcgtcac gcgtcttgat catggcggca cgtatgtcgg cggcgctcac
     3061 ctgggctgta ggcgggtcgt caaccgcctg cagggtgggc gccagcaggg acctggcctg
     3121 ggtcagcatg gccagtttct ggtcctgctg ctgcgggatg aaggtggcgc ccgagagcac
     3181 ctgcgccacc tccggcaggg cggagagctt ggccgacaga gcccgcgcct catccagatt
     3241 agccaccagc atgtcagcat aaaacgggtt ggtggccggg tccgccagca tcgagcggat
     3301 ggtgcgcatc gattccgtgt tgggatcctt ggtgtccaga ggattggcgt cgaaattgat
     3361 attcactgcg gacagcatac ctgccagcgc catcacaccg aaaaacccaa gcaccaagcg
     3421 gctatggcgg cgcagccagg catccgcctt ggccccgccc ggcaacccca caggtaccat
     3481 ctccgccctg gggcggaaga ctgtcagcaa ggctggcaga aaggtgatgg tgcagaaaaa
     3541 ggcgatgaac atgccagcgc cggcaatctc acccagctcc gccacgccga caaaggaagt
     3601 tggggagaac gcgaaaaagc ccgaggcggt agcggtcgcc gccagggcaa tctgcccgcc
     3661 cgcctggcgc gcggtttcct ccaaggcggg gccga
//
LOCUS       DASQCV010000037         1577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2826862, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000037 DASQCV010000000
VERSION     DASQCV010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2826862"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1525)
                     /locus_tag="VEQ16_00465"
     CDS             complement(<1..1525)
                     /locus_tag="VEQ16_00465"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP62324.1"
                     /translation="MSAEATDTKPAAAAREGHRWWLFAACVLVSLTNELSTAVTNLSL
                     GPMRRDLGASSAVMQMAVTLGKLMLGAFMLAGGVAGDIYGRRRVLVLGALGMMGASLL
                     AAVAQTGGMLLVARALDGLASAAIGPMALALIASAFSQAEQARVIGLFLGLSGLGAAL
                     GPLGAGLVVQAQGWRAGFLMPAAVAALGGCGVFLFATGSGAKTEGRRLDGIGALTCAA
                     GLLGLVFGIIQINQVGLLHPRVLQSLSVGMGALLAFVWWERRARDPLLDVRLFRSRTV
                     SVAVTAGLLAALVIGGALLPLLYFLQTVQKVGQISAIVRLMPLMVAAAAFAPMAGEMT
                     AKIGPRKVIVAGLLLMAAGSSLLILLGPETPYGQLMLALVLLGAGDIAVVTPVADVIL
                     SAVPRERTGSAAAVNGAAMQIGGALGTAVLSSVLIAAARATYYQRLEASGLSGQEIAA
                     ATEALRRSIQKGAQSGGEAIPEAVRTQLFDAYQYAFSTGAGGVFTCSALVSLLCAMLV
                     "
BASE COUNT          332 a          534 c          474 g          237 t
ORIGIN      
        1 aaacgagcat cgcacaaagg aggctaacaa gcgcggagca ggtaaatacc cccccggcgc
       61 ccgtcgagaa cgcgtattga taggcatcga aaagttgtgt ccggaccgcc tcaggaatgg
      121 cttcgccgcc gctctgcgcc cccttctgga tggatcggcg caaggcttcc gtcgcggcgg
      181 caatctcctg acctgatagc ccgctcgctt ccagacgttg gtaatacgtg gcgcgagcgg
      241 cggcgataag gacgctgctt aacaccgctg ttccaagggc accgccgatt tgcattgccg
      301 ctccgttgac cgcggcggcg ctgccggtcc gctcccttgg cacggcactg aggataacgt
      361 cggctacggg cgttacgaca gcaatgtcac cggcacccag caggacgagc gcaagcatca
      421 gttgcccgta aggcgtttcc gggccgagca aaatcaacaa gctgctaccg gcggccataa
      481 gcagcagtcc cgccacaatg acctttcttg gtccgatttt ggcggtcatt tcccccgcca
      541 tgggcgcgaa cgccgcggcg gcaaccatca gcggcatgag ccgcacaatc gctgagatct
      601 ggccaacctt ttgcacggtt tgcaggaaat agagcagcgg taaaagggcg ccgccgatga
      661 ccagtgcggc caataatccg gccgtgacgg ccacagagac ggtgcgactc cgaaagagcc
      721 tgacatccag tagcggatcc ctggcccgcc gttcccacca gacgaaagca agcaatgctc
      781 ccatgccaac ggaaagcgat tgcaacaccc gcggatgcag caagccgacc tggttgatct
      841 gaatgatccc gaagaccagt ccgagcagac cggcagcaca agtgagcgcg ccgatgccat
      901 ccagccgccg cccttcggtt tttgcgccgc ttccggtggc aaacaggaat accccacagc
      961 cacccagggc ggccaccgcg gcaggcatca gaaaaccggc acgccaaccc tgcgcttgca
     1021 ccaccaggcc cgcgccgagc ggcccaagcg ccgcaccgag cccggacagc ccgagaaaga
     1081 gtccgatgac tcgcgcttgt tcagcctggc tgaacgcgct tgcgattaac gcgagcgcca
     1141 tcggcccgat cgcggcgctg gccaatccgt caagggcgcg cgctaccagg agcattcctc
     1201 ccgtctgcgc gaccgctgcg agtaaggatg cgcccatcat gccgagggcg ccgagcacca
     1261 gcacgcgacg ccgaccatag atatcgcccg caacgccgcc ggcgagcata aaggccccga
     1321 gcatcagctt gccaagggtg acggccattt gcatgaccgc ggaagatgcg cccaggtcgc
     1381 ggcgcatcgg gcctaaggaa aggttcgtga ccgcggtgct cagctcgttc gtcaggctga
     1441 ccagcacgca agcggcaaaa agccaccagc gatgcccctc ccgtgcggcg gccgctggct
     1501 ttgtgtcggt ggcttcggcg ctcatagtga cagcagtgta ccgcctcgca tataatggtg
     1561 acatcgccgc agggtca
//
LOCUS       DASQCV010000038         1813 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2329649, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000038 DASQCV010000000
VERSION     DASQCV010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1813
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2329649"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VEQ16_00470"
     CDS             <1..207
                     /locus_tag="VEQ16_00470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008942749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HYP62325.1"
                     /translation="VIAAGLGALQERYPALEIGSYPFFRQGRYGASFVLRGTVQGLID
                     AAAAELRALIRQLGAEPIEGEAPG"
     gene            210..1652
                     /locus_tag="VEQ16_00475"
     CDS             210..1652
                     /locus_tag="VEQ16_00475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62326.1"
                     /translation="MRPSPNWRRIAARLEGPWPPARYWLLSAAAVLALLCWLPHPYYG
                     EEPVYAITTVETWWHGSWLSPVQLGSQYGRTPFLNWVAMLGVWLLGWDHLLLALRLIA
                     ALSTLGMAAMAAFFAYHLSRDRLLAAFTTACFLTGDLLTQRGWMAYSDPLFSLAIFGS
                     ILCLWLAVDRRSPALLVVAAIAISAGFLTKALTAYGFYGAAGLVLLLRHENRRFLLSP
                     VSLAIHAAILGFMPLWIFAIGGWSSNARLFADIADRANTGGFGHFIGSVLSYWGEMVL
                     RLLPVSAVVLALLIRPKLGSKEAGAVAAPCPSWSITLRWILLLGALPYLVTADNHPRH
                     LLPLYPIFAIVAAELALRRGQRLLAPLHAALIAWIVVTIPVALVISPWISTRQHGNSA
                     KVAAEIDALTKGQPLYTGDGGSETLAVIAHLDVLRLPAEPIGTGPRQAKDGFFLFRVP
                     APEWAGKEVASFSLGRMPLGLLCRGSACKP"
BASE COUNT          223 a          663 c          589 g          338 t
ORIGIN      
        1 gtgatcgccg ccgggctggg ggcgctgcaa gagcgctatc cggcgctgga gatcggcagc
       61 tatcccttct ttcgccaggg ccgctacggg gcgagcttcg tgctgcgcgg cactgtccag
      121 ggcctgatcg atgccgccgc cgcggagctc cgcgccttga tccgccagct cggcgccgag
      181 cccatcgaag gcgaggcgcc gggctaggca tgcggccatc tcccaactgg cgtcgcatcg
      241 cggcgcggct cgaggggccc tggccgccgg cgcgctattg gctgctctcg gccgcggccg
      301 tgctcgccct gctctgctgg ctgccgcatc cctattacgg cgaggagccg gtctatgcca
      361 tcaccaccgt cgagacctgg tggcatggaa gctggctgag cccggtgcag ctcggctccc
      421 aatatggccg gacgccgttt ctcaactggg ttgccatgct gggcgtctgg cttctgggct
      481 gggaccatct gctgctggcg ctgcgcctga tcgcagcgct ctcgaccctc ggcatggcgg
      541 cgatggcggc cttcttcgcc tatcatctct cgcgcgaccg gctgctcgcc gccttcacca
      601 ccgcctgctt cctgaccggc gatctcctga cccagcgcgg ctggatggcc tattccgatc
      661 cgctcttctc gcttgcgatc ttcggctcga tcctctgcct ctggctcgct gtcgaccgcc
      721 gcagccccgc actgctggtg gtggcggcca tcgccatcag cgccggcttt ctcaccaagg
      781 cgctgaccgc ctatggtttc tacggcgccg ccgggctggt gctgctgctc cgccatgaga
      841 accggcgctt cctgctctcg cccgtgagcc tcgcgatcca tgccgcgatc ctgggattca
      901 tgccgctctg gatcttcgcc atcggcggct ggagcagcaa tgcccggctg ttcgctgata
      961 tcgccgaccg ggccaatacc ggcggcttcg gccatttcat cggaagcgtg ctcagctatt
     1021 ggggcgagat ggtcttgcgc ctcctgccgg tcagcgccgt ggtgctggcg ctcctgatcc
     1081 ggcccaagct cggcagcaag gaggcgggcg cggtcgccgc accttgccct tcctggagca
     1141 tcacgctgcg ctggatcctg cttctgggcg cgctgcccta tctcgttacc gccgacaacc
     1201 atccgcgcca tctgctgccg ctctatccga tcttcgccat cgtggcggcc gagctcgcgc
     1261 tgcgccgggg acagcgcctc ctggcgccgc tccatgccgc gctgatcgcc tggatcgtcg
     1321 tcaccatccc ggtggcgctc gtgatcagcc cctggatatc gacccgccag cacggcaatt
     1381 cggccaaggt ggcggccgag atcgacgcgc tcaccaaagg ccagccgctc tataccgggg
     1441 atggcggcag cgagaccctt gcggtgatcg cccatctcga cgtgctgcgc cttccggcgg
     1501 agcccatcgg caccggcccc cggcaggcca aggacggctt cttcctgttc cgggtcccgg
     1561 cgccggaatg ggccggcaag gaggtcgcga gcttctcgct gggccgcatg ccgctcggcc
     1621 tgctctgccg cggcagcgcc tgcaagccgt gacggagcgg cgaggggcac aggccccagg
     1681 ccccggcttc tagccccttt ggcagcgatg ctctaggctt gggcgcgcca gggcccgctt
     1741 ggtgaaactg gtagacacaa gggacttaaa atcccttggc cggcaacggc cgtgccggtt
     1801 caagtccggc agc
//
LOCUS       DASQCV010000039         2379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_8136, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000039 DASQCV010000000
VERSION     DASQCV010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2379
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8136"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1691)
                     /locus_tag="VEQ16_00480"
     CDS             complement(<1..1691)
                     /locus_tag="VEQ16_00480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYP62327.1"
                     /translation="MTPVLEIRGLTVTLPRAGRDVPILEDFNLTIAPGRMLALVGESG
                     AGKSVAALSVLRLLPPGAKISGEIRLDGTRVEKAGLQRLRGAVASMVFQDPLAALNPT
                     QTVAAQIGEAWRVHKGGSKAEARAKALALLEEVGIADAATRLDDYPHQFSGGQRQRVM
                     IAMALVCGPKLLIADEPTTGLDPLVAQQIMSLIAGLRRSKNLAVLFVTHDLSLVAEHA
                     DEVHVLYAGRSVEWGAAKEFFAQPRHPYSAALRGAVAWLGQKKLAAIPGQLPEPEARP
                     PGCRFAPRCGFAQVDCTRAYPAPVQTDGTIAACLYPLQGRQTFTPAAGAPAAQRFAPL
                     LEVQNLSLRYGKKPVLADVSLTVGQGECLGIVGESGSGKSSLGKAILQMLPYAGRVAL
                     EGQDFAALRGAKMRAARRRVQVVFQDPRESLNPRLRIGEIIAEPLRLAGMKRGEAAAK
                     VETLLHDVGLSPALMGRLPGSVSGGQAQRIAIARALAAEPALLVLDEPTSALDVSNQA
                     LLLNLLRGLAQERGLSCLLISHDFAVVSFLSDRIAVLRKGRVVETGETSGLLAAPR"
     gene            complement(1688..>2379)
                     /locus_tag="VEQ16_00485"
     CDS             complement(1688..>2379)
                     /locus_tag="VEQ16_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP62328.1"
                     /translation="YALRGPSLAFPLGTDELGRNGLALLLAGGQATLIVSLPAALLAF
                     CSGLGYGLLTGLGAGWLDKILMRLLDVFLALPSLVVLIFFAALVPLNNVSLVLLLGFL
                     SWPALARLVRNEVVAQRGRDFILAAEQSGAGRFYIARVHIMRMIAPVLVVNATFLVGD
                     TIFSLSALSFLGLGVQPPHVSWGSSLQSALDIIALAPWWLIIPPGLMIFGSLLAASLA
                     GQGLVRREGAR"
BASE COUNT          448 a          880 c          712 g          339 t
ORIGIN      
        1 cgcggcgcgg ccagtaaccc ggacgtctcg cctgtctcga ccacccgccc cttgcgcagc
       61 accgcgatcc ggtcgctaag aaaactcaca acggcgaaat catggctgat gagcaggcag
      121 gagagcccac gctcctgcgc caggccgcgc agcagattca gcaacagcgc ttggttcgag
      181 acatcgagcg ccgaggtcgg ctcatccagc accagcaaag cgggctctgc ggccagcgcg
      241 cgggcgatgg cgatgcgctg cgcctgcccg ccggagacgc tgcctggcag ccgccccatc
      301 agcgcggggc ttaagcccac atcgtgcaac agcgtctcca ccttcgccgc cgcttcaccc
      361 cgcttcattc cggccaggcg taacggctcg gcaatgatct cgccgatccg caaacgcgga
      421 ttcagactct cgcgcgggtc ctggaacacc acctgcacgc gccgccgcgc tgctcgcatt
      481 ttcgcgccgc gcagcgcggc gaaatcctgt ccttccaatg caacccggcc ggcataaggc
      541 agcatctgca aaatcgcctt gcccaggctt gattttcccg aaccgctctc gccgacaatg
      601 ccgagacact cgccctgccc caccgtcagg gacacatccg ccaaaacggg ttttttgcca
      661 tagcgcaggg agagattttg cacctccagc agcggcgcga aacgctgcgc cgccggtgcc
      721 ccggcggccg gcgtaaatgt ttggcgccct tgtagcggat acaggcaggc cgcgatggtc
      781 ccatccgttt gcacaggggc aggataggcc cgtgtgcagt ccacctgcgc aaaaccacag
      841 cgcggcgcga agcggcagcc cggcggccgc gcctcaggct ccggcagctg ccccggaatc
      901 gccgccagct tcttctgccc cagccacgcc accgcgccgc gcagcgccgc gctgtagggg
      961 tggcgcggct gcgcgaaaaa ttctttcgcg gcgccccatt ccacactgcg cccggcatag
     1021 agcacatgca cctcgtccgc atgctccgcc accagggaga gatcatgcgt cacaaacagc
     1081 acagcgagat ttttgctccg ccgcagcccg gcgatgagcg acatgatctg ctgcgccacc
     1141 agcgggtcga gcccggttgt cggctcatcg gcaatgagaa gctttggtcc gcagacaagc
     1201 gccatcgcaa tcatcacgcg ctggcgctgg ccgccggaaa attgatgcgg gtagtcatcg
     1261 agtctcgttg ccgcgtcggc aatccccacc tcttccagca gcgccaaggc ttttgcccgc
     1321 gcttcggcct tgctgccgcc cttatgcacg cgccaggcct cgccgatctg cgccgccacg
     1381 gtctgggtcg ggttcagcgc cgccagcggg tcctggaaca ccatggaagc caccgccccg
     1441 cgcaggcgct gcagcccggc tttttccacg cgcgtgccat cgagcctgat ttccccgctg
     1501 atcttcgcac ccggcggcaa aagccgcagc acggacaggg ccgcaacgct cttgccggcg
     1561 ccgctttccc ctaccagcgc cagcatcctg ccgggcgcga tcgtcaggtt gaaatcctcc
     1621 aatatcggca catcgcgccc ggcgcgcggc agggtcacgg tcaggccgcg tatctccagc
     1681 acaggcgtca tcgtgcgccc tcgcgccgca ccagcccctg tcctgccagc gatgccgcca
     1741 gaagcgagcc gaaaatcatc agtccgggcg ggatgatgag ccaccagggg gcgagggcga
     1801 tgatgtcgag cgcgctttgc agcgagctgc cccagctcac gtgcggcggc tgcacgccga
     1861 ggcccagaaa gctcaaggcg gagagcgaga aaatcgtatc gccgacgagg aaggtggcgt
     1921 tcaccaccag caccggcgcg atcatgcgca ttatatgcac ccgcgcgata tagaaccgtc
     1981 ctgccccgga ctgctccgcc gccaggatga aatcgcggcc gcgctgcgcc accacctcat
     2041 tgcgcaccag ccgcgccaga gccggccagg agagaaagcc cagcagcagc acgaggctca
     2101 cattattcaa cggcaccaag gcggcgaaga aaatcagcac cacaaggctc ggcagcgcca
     2161 ggaaaacatc cagcagccgc atgaggattt tatcgagcca tcccgccccc agccccgtca
     2221 gcagcccgta gccaagcccg gagcaaaaag ccagcagtgc cgcgggaagc gaaacgatga
     2281 gcgtcgcctg cccgcccgcc agcagcagcg ccagcccgtt gcgccccagc tcatccgtgc
     2341 ccagcggaaa ggcaaggctc ggcccgcgca gcgcgtagg
//
LOCUS       DASQCV010000040         2613 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1832037, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000040 DASQCV010000000
VERSION     DASQCV010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2613
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1832037"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..320
                     /locus_tag="VEQ16_00490"
     CDS             <1..320
                     /locus_tag="VEQ16_00490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003622250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HYP62329.1"
                     /translation="APEETVLRVADLTLDRLSHKVTRRAEEIVLQPREFRLLEYLMQN
                     AGKVVTRTMLLEHVWDYHFDPQTNVIDVHVSRLRQKIDKPFELPLLHTVRNAGYMLRA
                     EEI"
     gene            371..1804
                     /locus_tag="VEQ16_00495"
     CDS             371..1804
                     /locus_tag="VEQ16_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYP62330.1"
                     /translation="MGQNSKLVADLPQTMRQEQAARAPGLRVIRSAGRRFAVLYALMF
                     GVSSFLLAASLWYSTIGLVQHQVESAIHTDDQALVALAQPPAGSIALVAQAIATRLAS
                     PVDTGSIYLLVDPTGNRVAGNLDSWPEGLTQMDAWYQLPVSRAGSASVALLRAEALPG
                     GARLLVGRDVLVRAQLWRVLRNGLIWTGFLMVALGLAGAVVIRSIFRRMVRDISITSR
                     AIARGDLSRRLPVGVGEEFDELATIINDMLDRISRLMDGVRQVSNAIAHDLRTPVTRA
                     RARLEDAALHAETMEDMQAAVERAMLDLDGIVGVFEALLRIAEIEAGSRRAAFAPVDL
                     TQTLWDMDELYRAVAEERGLHLHAIINAPLPILGDRELVQQAVANLLDNALKFSAPGT
                     VIDLVARLEDKVVQIMVADRGPGIAAADRDRATERFFRAETARTTAGSGLGLALVSAV
                     AQLHNGTLQLFDNHPGLRAVICLPAQG"
     gene            complement(1931..>2613)
                     /locus_tag="VEQ16_00500"
     CDS             complement(1931..>2613)
                     /locus_tag="VEQ16_00500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62331.1"
                     /translation="AISSGIFFMITTYAITQGFGDDGSALGGSAAPIGDIANKLGKWM
                     TAPVYFGATVSSFACALASLNAFGRMLFSLGRYQFVHNSMGVVHKTHRTPIVALSAGA
                     VLNFAVCAAFAGQTETNTYGWYGTLASYGFIIVYLMCSIAAPVLLKRTGELTGGAIAI
                     GVLGVVFMLFALGGSVYPVPSAPYNYFPYAFAIYLLIGFAWFSFIKVRSPQVLAGIEH
                     DLEAAAAE"
BASE COUNT          448 a          821 c          911 g          433 t
ORIGIN      
        1 gcgcgccgga ggagacggtt ctgagggtcg ccgacctgac gctcgaccgg ctgtcgcaca
       61 aggtcacccg gcgggccgag gaaatcgtcc tgcagccgcg cgaattccgg cttctggaat
      121 atctgatgca gaacgccggc aaggtggtca cgcgcaccat gctgctcgag catgtttggg
      181 attaccactt cgatccgcag accaatgtga tcgatgtgca tgtgtcgcgc ctgcgccaga
      241 agatcgacaa gccgttcgag ctgccattgc tgcacaccgt gcgcaatgcc ggctatatgt
      301 tacgtgctga agagatctga gcggctgggg cgcggcgtgg cgggaatggg agatttatga
      361 cgcggcgtcc atgggtcaga attcgaaact cgtagcagat ctgccgcaga ccatgcggca
      421 ggagcaggct gcgcgggcac ccggcttgcg ggtgatccgc tccgccgggc ggcgctttgc
      481 cgtgctctac gcgctgatgt tcggcgtctc ctccttcctg ctcgccgcct cgctctggta
      541 ctccaccatc gggctggtgc agcatcaggt ggaaagcgcc atccataccg acgaccaggc
      601 cctggtggcg ctggcgcagc cgccggcagg cagcatcgcg ctcgtggcgc aggccatcgc
      661 cacgcgtctc gcctcgccgg ttgataccgg cagcatctat ctgctggtgg acccgacggg
      721 gaaccgcgtg gccggcaatc tcgattcctg gcccgagggg ctgacgcaga tggatgcctg
      781 gtaccagctg ccggtgagcc gggccggctc ggcctcggtc gcgctgctgc gggcggaagc
      841 cctgcccggc ggggcaaggc tgctcgtggg acgcgatgtg ctggtgcgcg cgcagctctg
      901 gcgcgtgctg cgcaacgggc tcatctggac cggctttctc atggtggcgc tggggctggc
      961 gggggccgtt gtcatacgct ccatcttccg gcgcatggtg cgcgatatct ccatcaccag
     1021 ccgcgccatc gccaggggcg acctctcgcg ccgcctgccg gtcggcgtgg gcgaggaatt
     1081 cgacgagctg gccaccatca tcaacgacat gctggaccgc atctcgcggc tgatggacgg
     1141 ggtaaggcag gtctccaacg ccatcgcgca cgacctccgc acgccggtga cgcgcgcccg
     1201 tgccaggctc gaggatgcgg cgctgcatgc cgaaaccatg gaggatatgc aggcggccgt
     1261 ggaacgcgcc atgctggatc tggacggcat tgtcggcgtg ttcgaggcgc tgctgcgcat
     1321 cgccgagatc gaggccggct cgcgccgcgc cgccttcgcg ccggtcgacc tcacgcagac
     1381 gctgtgggac atggatgaac tgtaccgcgc cgtggcggag gagcgggggc tgcatctgca
     1441 cgccatcatc aacgctccct tgccgatcct gggcgaccgc gagctggtgc agcaggccgt
     1501 ggccaatctg ctcgacaatg cgctgaaatt ttccgcgccc ggcactgtca tcgacctcgt
     1561 ggcgcggctg gaggacaagg tggtgcagat catggtggcg gaccgcggcc ccggcatcgc
     1621 cgcggctgac cgcgaccgcg cgacggagcg gtttttccgc gccgagacgg cgcgcaccac
     1681 ggcaggctcg ggactggggc tggctttggt ctcggccgtc gcgcagctgc ataacggcac
     1741 gctgcagcta ttcgacaatc atccggggtt gcgggcggtg atctgcctgc cggcgcaggg
     1801 gtagcttcat tccggcctgg tccagctcga cctggtccag cgtgccgcaa agcgtggcgt
     1861 tgttaatgat ctgaaacgac aaacggcgcc ggagtccggc gccgtttcgt tgcgggggtg
     1921 agactacgct ctattcggcg gcggccgctt ccagatcatg ctcgatgccg gccagaacct
     1981 gcggcgaacg caccttgatg aagctgaacc aggcgaagcc gatgagcagg taaatggcga
     2041 acgcgtaggg gaagtagttg tagggcgccg acggcaccgg atagaccgac ccgcccagcg
     2101 cgaacagcat gaacaccacg cccagcacgc cgatggcaat ggccccgccg gtgagctcgc
     2161 ccgtgcgctt cagcagcacg ggtgctgcaa tggagcacat cagatagacg atgatgaacc
     2221 cataggaagc gagcgtgcca taccagccat aggtgttggt ctcggtctgg ccggcaaagg
     2281 cagcgcagac ggcgaagttg agcacggcac ccgcgctgag cgcgacgatg ggggtgcggt
     2341 gcgtcttgtg cacaacgccc atggaattat gcacgaactg gtagcggccg agcgagaaca
     2401 gcatgcgccc gaatgcgttc agcgaggcca gcgcgcaggc gaaggacgac acggtggcgc
     2461 cgaaatagac cggggccgtc atccatttgc cgagcttgtt ggcaatgtcg ccgatgggcg
     2521 cggcgctgcc gccaagcgcg gagccgtcat caccgaaacc ctgggtgatg gcataggtgg
     2581 tgatcatgaa gaaaatgccc gaggaaatcg ccg
//
LOCUS       DASQCV010000041         3788 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1666259, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000041 DASQCV010000000
VERSION     DASQCV010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3788
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1666259"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1437)
                     /locus_tag="VEQ16_00505"
     CDS             complement(<1..1437)
                     /locus_tag="VEQ16_00505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011385785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP62332.1"
                     /translation="MRLSHFFIERPIFAVVVSLFITIAGAVAYFTLSVAQYPGIVPPT
                     ISVTTSYPGASADVVSQTVATPLEQQINGVENMLYMSAQSTGDGKLTITVTFRQGSDV
                     DTDQVLTQNRVSAALARLPDAVQRQGVMVQKQSPDLLMVIHLISPKNSRDLLYLSNYA
                     TLSVRDTLLRQPGVGDVQVFGARDYAMRIWLDPNKVAARGLTADEVIAALRAQNQQVS
                     AGVLGQPPDPTHSAFQMNLQVLGRLTDPSQFADIIIKTGAGGQVTRIRDVGRVELGSQ
                     DYGATGYLDNKDAVPILIFQQPGSNAIKTADGVRAAMRQLSQNFPPDLKYDIVYDTSR
                     FVAESVHDVFKTILIAIMLVVFVVIVFLQTWRASIIPIIAIPVSLIGTFGVMAVLGFS
                     LNSLSLFGLVLAVGIVVDDAIVVVENVERNLRAGMTPKEAAHRTMNEVGGALIAIALT
                     LCAVFVPSSFISGLPGEFFRQFAATISAS"
     gene            complement(1447..2661)
                     /locus_tag="VEQ16_00510"
     CDS             complement(1447..2661)
                     /locus_tag="VEQ16_00510"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYP62333.1"
                     /translation="MSDTALHRLTLRFYRRSLWLGLGALGAAALAAAIYTRSASSSAQ
                     AALAPPPPPAVTVSPALVTRTADWAAFTGQFSAVNSVEIRAQVSGYLTEIHFTDGQIV
                     HKGDLLFVIDPRPYQIQLEQAQASLLAAQAQLAFAQKETRRLSVLQSSGAATVESYDQ
                     RVQDQAAAQAAVDQAQAAVQSAQLNLQFCHITAPFTGRISAHRMSIGGLVNGGPNAAD
                     STLLTTIVSLDPIYLDFDMSEDDYLAYEHYLHSAQPGGKVDDTVQAELSDENFYPRKG
                     KLNFIDNAIDESSGTMHVRATFANPDLAITPGDFAQLRLPIAAPRKVLLVPDEALQAD
                     QSNQVLMTVAPDGTVVSKIVTTGALVEGLREIESGISPSDKIVINGLMRAWPGTKVTP
                     ELGSITANAKAD"
     gene            2917..3660
                     /locus_tag="VEQ16_00515"
     CDS             2917..3660
                     /locus_tag="VEQ16_00515"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYP62334.1"
                     /translation="MPRQDVTIQTSDGVCPASLFTPGTGSGPWPGVIFFMDGLGIRPA
                     MWEMGQKLADAGYTVLLPDAYYRFGAYPPMNPGETFADTAKRTKLMEWVGSLTRERKV
                     ADMDAYIKFLAARPEVKNPVFGATGYCMGGQAALTAAGAFPGSFAAIASFHGGNLAAD
                     APDSPHQFAGNIKARLYIAGAIEDPSFDETQKARLEKALTDAKVDHVVETYDGAYHGF
                     AVRDLPVYNEAAAARHWDALLKLFRETLG"
BASE COUNT          737 a         1194 c         1214 g          643 t
ORIGIN      
        1 cgaagccgaa atcgtcgccg cgaactggcg gaagaattcg cccggcaggc cggagatgaa
       61 ggaggacggc acgaacacgg cgcacaaggt cagcgcgatc gcgatcagcg cgccgcccac
      121 ctcgttcatc gttctgtgcg ccgcttcttt cggcgtcatg ccggcgcgca gattgcgttc
      181 cacattctcc accacgacga tggcgtcatc caccacgatg ccgaccgcca ggacgagccc
      241 gaacagggac aacgaattga gcgagaagcc gagcaccgcc atcacgccga acgtgccgat
      301 gagcgacacg ggaatggcaa tgatggggat gatggacgcg cgccaggtct gcaggaagac
      361 gatgaccacg aacacgacaa gcatgatggc gatgaggatc gtcttgaaga cgtcatgcac
      421 cgattccgcc acgaagcgcg aggtatcgta gacgatgtcg tatttcaggt ccggcgggaa
      481 attctgcgat aattgccgca tcgccgcgcg cacgccatcg gccgtcttga tagcgttgga
      541 gcccggctgc tggaagatga gaatgggcac ggcatccttg ttgtcgagat agccggtggc
      601 gccataatcc tgcgagccca gttccacccg tccgacatcg cggatgcgcg tcacctggcc
      661 gccggcgccg gtcttgatga tgatgtcggc gaattgcgac gggtcggtaa ggcggcccag
      721 cacctgcaga ttcatctgga aggcggaatg ggtcgggtca ggcggctggc cgagtacgcc
      781 ggcggacact tgctggttct gcgcgcgcag ggccgcgatc acctcatcgg ccgtcagccc
      841 gcgcgcggcg accttgttcg ggtccagcca gatgcgcatc gcataatcgc gcgcaccaaa
      901 cacctgcaca tcgccgacac cgggctggcg cagcagcgtg tcgcgcacgc tcaacgtggc
      961 ataattggaa agatagagca ggtcacgcga gtttttcggc gagatgagat ggatcaccat
     1021 cagcaggtcg ggcgattgct tctgcaccat gacaccctgg cgctgcaccg catccggcag
     1081 gcgcgccagc gcggcggaga cgcggttctg cgtcagcacc tggtcggtat ccacgtccga
     1141 gccctggcgg aaggtgacgg tgatggtgag cttgccatcg ccggtggatt gcgcgctcat
     1201 atagagcatg ttttccacgc cgttgatctg ctgctccagt ggtgtcgcca ccgtctggct
     1261 caccacatcg gccgaggctc cgggataaga ggtcgtcacc gagatggtgg gcggcacgat
     1321 cccaggatat tgcgcgacgg acaacgtgaa atacgccacc gcgccggcaa tggtgatgaa
     1381 caggctgacg acgaccgcga aaatcggccg ctcgatgaag aagtgggaga ggcgcatggc
     1441 agggccttag tcagctttgg cgttcgcggt gatggagccc agctccggcg tcactttcgt
     1501 gcccggccag gcgcgcatca gcccgttaat gacgatcttg tccgacggcg aaatgccact
     1561 ctcaatctcg cgcaaccctt ccaccagcgc gccggtggtg acgatcttcg aaaccaccgt
     1621 gccatccggc gccacagtca tcagcacctg gttggactgg tcagcctgca gcgcctcatc
     1681 cggcaccagc agcaccttcc gcggcgcggc gatgggcagg cgcaattgcg cgaaatcgcc
     1741 tggggtgatg gcgaggtcgg ggttggcgaa ggtggcgcgc acatgcatgg tgccgctgct
     1801 ttcatcgatg gcattatcga tgaagttcag cttgcccttg cgcggataga aattctcgtc
     1861 gctcagttcc gcctgcaccg tgtcatccac cttgcccccc ggctgggcgc tgtgcaggta
     1921 atgctcatag gccagataat catcctcgct catatcgaaa tcgagataaa ttgggtcaag
     1981 cgagacgatg gtggtgagca aggtggaatc agccgcattt ggtccaccat tcaccagccc
     2041 gccaatggac atgcggtgcg cggagatgcg cccggtgaag ggcgcggtga tgtggcagaa
     2101 ttgcagattg agctgcgcgg attgcaccgc cgcctgggcc tggtccaccg ccgcctgcgc
     2161 cgccgcctgg tcctgcacgc gctggtcata gctttccacc gtcgccgcac cgctgctctg
     2221 cagcacgctc aaacggcgcg tctccttctg ggcgaaggcc agctgcgcct gcgccgccag
     2281 cagcgaggcc tgggcctgct ccagctggat ctgatagggg cgcgggtcga tgacgaacag
     2341 cagatcgccc ttatgcacga tctgcccgtc ggtgaagtga atctccgtga ggtagccgct
     2401 cacctgggcg cggatttcca ccgaattcac agccgagaac tggccggtga aagcggccca
     2461 gtcggccgtg cgcgtcacca aagccgggct cactgtcacg gcgggcggcg gcgggggcgc
     2521 caatgccgcc tgggcggaag agctggcgga gcgggtataa atcgccgccg ccaaggctgc
     2581 cgcgccgagg gcgcccagcc ccagccagag gctgcgcctg taaaagcgaa gggtgagacg
     2641 gtgcaaagct gtgtcggaca tcgtggttaa cccagaacag gcggtgcaac aacgcggaac
     2701 aggccggcgc ggccctgcgg cgtgggaaga cgccagggaa gcggggatcg tgctccattc
     2761 tgtatcggtt actacaaaat agatcaggca acggagggtt caatggggga gcccgaaata
     2821 ttccatgccg cacaaatttt cccgcgccgg cgcgccattg cccctcggcg tccgtctcct
     2881 taagctcaag aaaactctgg caaaaggaaa acgaccatgc cccggcaaga cgtgacgatt
     2941 caaaccagcg acggcgtttg ccctgcttcc ctcttcaccc ctggcacggg cagcgggccc
     3001 tggcccggcg tgattttctt catggacggg ctcggcatcc gccctgccat gtgggagatg
     3061 ggccagaaac tcgccgatgc gggttacacg gtgctgctgc ccgacgccta ttaccgcttc
     3121 ggcgcctacc cgccgatgaa tccgggcgag accttcgccg acacggcgaa gagaaccaag
     3181 ctgatggaat gggtcggcag ccttacgcgc gagcgcaagg tcgcggatat ggacgcctat
     3241 atcaaattcc tcgccgcccg gccggaagtg aaaaaccccg tcttcggcgc caccggctat
     3301 tgcatgggcg gccaggccgc cctcactgcc gccggagcct tccccggcag tttcgccgcc
     3361 atcgcctcgt tccatggcgg caacctggcc gcggatgcgc cggacagccc gcaccagttc
     3421 gcgggcaaca tcaaagcgcg actctatatc gcgggcgcca tcgaggaccc gtccttcgac
     3481 gaaacgcaga aggcgcgcct ggaaaaggcg ctgacggatg ccaaggtgga tcatgtcgtc
     3541 gagacctatg acggggcgta tcatggtttc gctgtgcgcg acctgccggt gtacaatgaa
     3601 gccgcagcag cgcgccactg ggacgcgctg ctgaaactct tcagggaaac gctgggctag
     3661 gcgaaaactt cgccgaccca ttcctcgctc ttggcccaga acgccttcgc gtgctccggg
     3721 tcgagagcat aaggccgcac gccttccttc atgacgccga gcggcccatc agtgacataa
     3781 gcggtgac
//
LOCUS       DASQCV010000042         2196 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1998313, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000042 DASQCV010000000
VERSION     DASQCV010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1998313"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(83..583)
                     /locus_tag="VEQ16_00520"
     CDS             complement(83..583)
                     /locus_tag="VEQ16_00520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012223656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HYP62335.1"
                     /translation="MAFTVRSNSFKDGDYLAADHILSADYGFGCQGGNKSPHLAWSEA
                     PVGTRSFAITCFDPDAPTGSGFWHWLVVNIPAGVSELAVDAGNRSAPKLPAGALQTRT
                     DFGSPGYGGPCPPAGDHPHRYLFTIFAVGADSLQVTADTSAAVVGFQLHFNTLAKAAI
                     MGLYKR"
     gene            complement(757..>2196)
                     /locus_tag="VEQ16_00525"
     CDS             complement(757..>2196)
                     /locus_tag="VEQ16_00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004272520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP62336.1"
                     /translation="FAEAAQDTTPEQMMALLRKFGDVVLKDPEVANFATFTGTTGGAQ
                     TANTGRGFIVLKPRDERELTASQIIDRLRPHLAKIKGATLFMQPNQDITVGGRIARAS
                     FQYTLQDTDINELNEWSDKLVEKMRALPELADVSSDLLASAPQLKITINRDQASRFGI
                     SPQVIDDTINDAFGQRQITQYFTQLKTYWIILEILPELQKDIESLNLLYVKSPLTGGA
                     VPLSALVDVDPNKAGPLSIAHQGQFPAVTLTFNLQPGVALGQAVDAITQAAREIGMPA
                     SIIGTFQGNAQAFQSSLASEPALIAAALVVVYIILGILYESFIHPLTILSTLPSAGVG
                     ALLALNLGHMDLSVIGIIGIILLIGIVKKNGIMLVDFAITAERDQGMAPLAAIREACM
                     LRFRPILMTTAAAMLAGVPLAFGHGTGSELRQPLGYSMVGGLALSQLLTLYTTPVIYL
                     YLDRVQVWLRGGRHVRQHEDEPIHAIAAE"
BASE COUNT          424 a          669 c          706 g          397 t
ORIGIN      
        1 cgattgcgac agatgatatt cgggggtgcc accaggcaca ttctcgccaa cgccacaatc
       61 cccgtgctga tggcgcgctg atttagcgct tgtacagacc catgatggcg gccttggcca
      121 gcgtgttgaa atggagctga aagccgacca cggcggcaga ggtgtcggcg gtgacctgga
      181 ggctgtccgc accgacggcg aaaatagtga acagataacg atgaggatgg tcgcctgcgg
      241 gcggacaagg accgccatag cccggcgagc cgaaatcggt gcgcgtctgc aatgcgcctg
      301 ccggcagctt cggggcgctg cggttgccgg catccacggc cagctcgctt acgcccgcgg
      361 gaatgttcac caccaaccag tgccagaatc cgctgccggt cggcgcatcc ggatcgaagc
      421 aggttatggc aaagctccgg gtcccgaccg gcgcctccga ccatgcaagg tgcggtgact
      481 tgtttccgcc ctggcagccg aagccgtagt ccgccgacag gatgtgatca gctgcaagat
      541 agtcgccgtc cttgaagctg ttgcttctga ccgtaaacgc cattcgctgc cctccatcgc
      601 atgtgaaacg ggcatgcgcg cggttttata actgcgccca gcatcaccat cctactccaa
      661 aaacgctcgc gcgttttaag aggcccctca cagccgccct gtcgcaagaa gtgcacaatc
      721 ggacagaggc cgggcttaaa acccgtccta caaaggctat tccgcggcga tcgcgtgaat
      781 aggctcgtcc tcgtgctgcc gcacgtgcct gccgccgcgc agccatacct gcacgcggtc
      841 gagatagaga tagatgacgg gcgtggtgta gagcgtgagc agttggctca gcgcaagccc
      901 tcctaccatg gaatagccga gcggctggcg cagctccgaa ccagtgccgt gcccgaaggc
      961 gagcggcacg ccggcgagca tggcggcggc tgtcgtcatc aggatcggcc ggaaccgcag
     1021 catgcatgcc tcgcggatcg ccgccaaagg cgccatcccc tgatcgcgct cggcggtaat
     1081 ggcgaagtcg accagcatga tgccgttctt cttgacgatg ccgatcagca ggatgattcc
     1141 gatgattcct atcaccgaaa gatccatgtg gccgagattg agcgcgagca gcgcgccgac
     1201 gcccgccgag ggcagcgtcg aaaggatggt cagtgggtgg atgaagctct cataaaggat
     1261 tcccaggatg atgtagacga cgacgagggc agccgcgatc agggccggct cgcttgccag
     1321 cgaagactgg aacgcctgtg cattgccctg gaaggtgccg atgatcgaag cgggcatgcc
     1381 gatctcgcgc gccgcctgcg tgatcgcatc gaccgcctgt ccaagcgcca cgcccggctg
     1441 caggttgaag gtcagcgtaa cggcggggaa ctggccctgg tgcgcaatgg agagcgggcc
     1501 ggctttgttg ggatccacgt cgaccagcgc cgaaagcggc accgccccgc cggtgagcgg
     1561 ggacttcaca tagagcagat tgagcgattc gatgtccttc tgcagctcgg gcaggatctc
     1621 cagaatgatc cagtaggtct tcagctgagt gaaatactgc gtgatctgac gctggccgaa
     1681 ggcatcattg atcgtgtcat cgatcacctg cggcgagatg ccaaagcgcg aggcctggtc
     1741 ccggttgatg gtgatcttga gctggggtgc gctcgccagc agatcgctcg agacatccgc
     1801 cagctccggc agcgcgcgca tcttctccac gagcttgtcc gaccactcat taagctcgtt
     1861 tatatcggtg tcctgcagcg tgtactgaaa gctggcgcgt gcaatgcggc cgcccacggt
     1921 gatgtcctgg ttcggctgca tgaacagggt ggcccccttg attttggcta ggtgcggccg
     1981 caggcggtcg atgatctgcg aggcggtaag ctcgcgctcg tcgcgcggct tgagcacgat
     2041 gaagccgcgg ccggtattgg cggtctgcgc gccgccagtg gtgccggtaa acgtagcgaa
     2101 gtttgcgact tcaggatcct tgaggaccac atcgccgaac ttgcgcaaca gcgccatcat
     2161 ctgctcgggc gtcgtatcct gcgccgcctc ggcaaa
//
LOCUS       DASQCV010000043         5093 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1003189, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000043 DASQCV010000000
VERSION     DASQCV010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5093
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1003189"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            274..1242
                     /locus_tag="VEQ16_00530"
     CDS             274..1242
                     /locus_tag="VEQ16_00530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYP62337.1"
                     /translation="MRVLVTGAAGFIGYHVAQALLARGIEVVGVDDLNPYYDVRLKQA
                     RLARLGQGFSFHHLDIAEHEAVMRLGDGVEVIIHVAAQAGVRYSLANPFAYASSNLTG
                     HLSILELARHSRSVKHLIYASSSSVYGTGSVLPYVETERADRPSSLYAATKRADELMS
                     ASYTHLFGLRQTGLRFFTVYGPWGRPDMAYFSFAEAISAGTPITLYEGGQLQRDFTYI
                     DDIIAGILGVFDHPPTDEAPHRLYNIGNNRAEYVTDLVRLLEDGLGRKAVTIAKPKPE
                     ADPDKTCANVDALHALCGYVPSTKLAEGIPRFIAWYKQWQAMREAS"
     gene            complement(1239..2135)
                     /locus_tag="VEQ16_00535"
     CDS             complement(1239..2135)
                     /locus_tag="VEQ16_00535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007435320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP62338.1"
                     /translation="MRVFVTGATGFVGAAVVQELLSAGHKVLGLARSEASASSLEAAG
                     AAVHRGTLADLHLLARGAAQADGVIHLAFNHDFSKFAENCAEDGRAIEALGAALEGST
                     RPLLVTSGVALLAPGRTATEEDAPHAGFPRLSETAMNSLAARGVHASVVRLAPSVHGA
                     GDHGFVPHLIQLARETGISAYVGDGQNRWPAVHRADAARLYRLALEHNGIGQHYHAIA
                     EEGVPFKDIASLIGRHLNLPVVSKTPEEAQQHFGWFTLFASMNLPASSAWTQKQLGWT
                     PSFPGLLADIVQAGYFNARAAA"
     gene            2228..3070
                     /locus_tag="VEQ16_00540"
     CDS             2228..3070
                     /locus_tag="VEQ16_00540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011632486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYP62339.1"
                     /translation="MTGPAASNKLLGAFLKDRRLKLDPAAFGIPLVRRRTPGLRREEV
                     AQRANISATWYTWLEQGRGGAPSADVLERVARALMLTDAEREHMFLLGLGRLPDIRPA
                     ETEAVTPRLQRLLDALEVSPALIKTPSWDVVAWNRAATFVLSDYASIPPGQRNILRLM
                     FLSPHIRAAQYDWESVARFVVAAFRADVARAGATAKVEALVEELHALSPEFARLWQDN
                     DVRHYGEGVKRLRHPVLEEMVFEYSSFTVDGRLDLSMVVYNPATAENAQRIRALMAAT
                     TVAA"
     gene            3262..4803
                     /locus_tag="VEQ16_00545"
     CDS             3262..4803
                     /locus_tag="VEQ16_00545"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HYP62340.1"
                     /translation="MNIQEAVGDDPASARTYPQLLRAVASAYGDDIAITLTGETIPDD
                     ALSFVELERKSAELAKGLIARGVGKGTRVGFIYGNSPSFALMLAAIARVGGIAIPIST
                     LLKSDELVRVLRQSDLTGLIVQRQLLGHDYVARLCDALPELRAAGPDLRIAKVPYLRW
                     IVSTGQDLPPSIHDMEFLTGAAGTVSEELLREVEAEVYPTDQMVEIYTSGSMALPKGV
                     KHNHGPVLFRTHWLRPMLQVERHKTVPAVLPMFWVGGLMMYLLPGLAAGAVVTCTEGT
                     STSSRFAMGTVMAEDDLKAMPRMGTIWALGMSETLGPYSYADELRVPGYPLCAPLDHV
                     AERFEIRIADENGQPVPEGERGEIQVRGYAVTPGLHKIERAEYFESDGFYRTGDMGFA
                     EGSRILFVGRNGDMIKSASSNVSPAEVEMEMQQLEGIYSAYVVGLPDKGRGQLVVAAV
                     VAREGAKLDFAEIEATLRRKLSSFKVPRAYVEITREEVPMLPSNKVSRRLMERLMAEK
                     LGRSL"
BASE COUNT          934 a         1418 c         1761 g          980 t
ORIGIN      
        1 gaaatatgac atcaccatcg aaggcgacaa gctcaccggc aaggtgaaaa tgggcttctt
       61 cggcaatgcc aagctgacgg gcgagcgttt atagcgctcg cccgtcaggc gcatcgtgaa
      121 attgtcacaa tcggcgccca agaagaaaca ggacggccgg gtggcgcggc ttgattcgct
      181 gccgccgctt cgccagaagg gcagcatggc tgggtgacgc ctgtcttgcg gacacggccc
      241 aagattgaga cgatcctgtt cgtggggcgg atgatgcgtg tactggtcac gggggctgcg
      301 gggtttatcg gctatcatgt cgcccaggca ttgctggctc gcggcatcga ggtggtgggg
      361 gtggatgacc tcaaccccta ttatgatgtg cggctgaagc aggcgcggct ggccaggctg
      421 ggccagggat tcagctttca ccatctcgat attgccgagc atgaggcggt gatgcggctg
      481 ggggatgggg tggaggtcat catccatgtc gcggcccagg ccggggtgcg ttattcgctg
      541 gccaatccct tcgcctatgc cagttccaat ctcaccgggc atctctccat cctggagctg
      601 gcgcgccata gccggagcgt gaagcatctc atctatgcct cttcctcgtc agtctatggc
      661 accggctcgg tgctgcctta tgtggagacg gagcgggccg accgcccctc ctcgctctat
      721 gccgcgacca agcgggcgga tgagctgatg agcgcttcct atacgcatct gttcgggctc
      781 aggcagacgg gcttgcggtt tttcaccgtg tatgggccct gggggcggcc ggacatggcc
      841 tatttcagct tcgcggaggc catcagcgcg ggcacgccga ttactttgta tgaaggcggg
      901 cagctgcagc gcgatttcac ctatatcgac gatattattg ccggaattct gggtgtgttc
      961 gaccatccgc ccacggacga ggcgccgcac cggctgtata atatcggcaa taaccgggcg
     1021 gaatatgtga cagatctggt gcggctgctg gaggacgggc tggggcgcaa ggcggtgacc
     1081 attgccaagc ccaaaccgga ggctgacccg gacaagacct gcgccaatgt cgacgcgctg
     1141 cacgcgctgt gcggctatgt cccctccacc aagctggcgg aggggattcc gcgcttcatc
     1201 gcgtggtaca agcagtggca ggcaatgcgt gaagcctctt aagccgccgc gcgcgcgtta
     1261 aaataacctg cctggacgat gtcggcgagc aggccgggga agctgggggt ccagccgagc
     1321 tgcttctgtg tccaggcgct ggaggccggc aggttcatgc tggcaaacaa agtgaaccag
     1381 ccgaaatgct gttgcgcttc ttctggcgtc ttgctcacga ctggcaggtt gagatggcgg
     1441 ccgatgagac tggcaatgtc cttgaagggc acgccttcct cggcgatggc atgataatgc
     1501 tggccgatgc cgttatgttc cagcgccagg cggtagaggc gggcggcgtc tgcgcggtgc
     1561 acggcgggcc agcgattctg gccgtcgcct acataagccg agatgcctgt ctcgcgcgcc
     1621 agctggatga ggtgcgggac aaaaccatgg tcgccagcgc catggaccga gggggccagc
     1681 cggacgacgg aggcgtgcac gccacgcgcc gcgaggctgt tcatggctgt ttccgagagg
     1741 cgagggaaac cggcatgggg cgcgtcctcc tccgtggcgg tacggccagg ggccaggagg
     1801 gcgacgccag aagtgacgag cagcgggcgg gtgctgcctt cgagcgcggc gccaagcgcc
     1861 tcgatggcac ggccatcttc cgcacaattc tcggcgaatt tcgagaaatc atggttgaag
     1921 gcgagatgga tgacgccgtc cgcctgggcg gcgccgcgcg ccagaagatg caaatcggcc
     1981 aatgtgccgc gatgcacggc cgcacccgcc gcttccagag agctcgccga agcttcggac
     2041 cgcgccaggc caagcacctt gtgccccgcg gagagcaatt cctggacaac agccgcgccg
     2101 acaaaacccg tggcgccggt gacaaataca cgcatggcta aaactcctgt tggtggatgg
     2161 cgctcatttt ggtatttgtt ttatcctggt aaagtagtga cattatacag gtataatatc
     2221 taacagtatg actggacccg ctgccagcaa caagctcctc ggcgccttcc tcaaggatag
     2281 gcggctgaaa ctcgaccccg ccgccttcgg catcccgctt gtgcgccggc gcacgccggg
     2341 gctgcggcgc gaggaggtgg cgcagcgcgc caatatcagt gccacctggt acacatggct
     2401 ggagcagggg cgcggcggcg cgccttcggc cgatgtgctg gagcgtgtgg cgcgggcgct
     2461 gatgctgacc gatgcggaac gggagcatat gttcctgctc gggctggggc ggctgccgga
     2521 tatacgcccg gccgagacgg aggcggtgac accacggttg caaaggctgc tggatgcgct
     2581 ggaagtgagt ccggcactga ttaaaacccc gagctgggac gtggtggcct ggaaccgcgc
     2641 cgcgaccttc gttctcagcg attatgcttc catcccgccg ggccagcgca atattttgcg
     2701 gctcatgttt ctcagcccgc atatccgcgc cgcgcaatat gattgggaaa gcgtggcgcg
     2761 gtttgtggtg gcggccttcc gcgcggatgt ggcgcgggcc ggcgccacgg cgaaagtgga
     2821 ggcgctcgtg gaggagttgc acgcgctgag cccggaattt gcccgcctgt ggcaggataa
     2881 tgatgtgcgc cattatggcg agggggtgaa gcggctgcgg catccggtgc tcgaggaaat
     2941 ggttttcgaa tattcgtctt tcactgtcga tggccggctc gacctcagca tggtggtcta
     3001 caacccggcg acagcggaga atgcgcagcg gatcagggcg ttgatggcag ccacgacagt
     3061 agcggcttga ggcacgcacc ggcgatggac aggcccgacg atcaacccgc tacaaggagc
     3121 tgcgtgaatt gatggcggcg gtgctgcgca atgcggcaca gcgcgcgggc aaggtgggac
     3181 ggacggaacg ctggcctgat ggcttgcgcc gtttcatgat gtgagggatg gagacgcaag
     3241 aatgatgggg accctttgac ggtgaacata caggaagctg ttggcgatga tcccgcttca
     3301 gcacggacat atccccagct gctccgcgcc gtcgcttctg cttatggcga tgatattgcc
     3361 attacgctga cgggcgagac aattcccgac gatgcgctga gttttgttga actggagcgc
     3421 aaatccgcgg aactggcgaa agggttgatc gcccggggcg tgggcaaggg cacgcgcgta
     3481 ggcttcatct atggcaacag cccgtctttt gccttgatgc tggcggcgat cgcgcgggta
     3541 ggcggcatcg cgattcccat cagcaccttg ctgaaatccg atgagctggt gcgggtgctg
     3601 cgccagtccg accttaccgg cctcatcgtg caaaggcagc tgctggggca tgattatgtg
     3661 gcgcggctgt gcgatgcgct gccggagttg cgcgccgctg ggccggattt gcggattgcc
     3721 aaggtgcctt atctacgctg gattgtttcg acgggccaag atctgccgcc atccatccat
     3781 gatatggaat tcctcaccgg tgcggcgggc acggtaagcg aggaattgct gcgggaggtg
     3841 gaggcggagg tttatcccac cgaccagatg gtggagattt atacttccgg ctcgatggcc
     3901 ttgccaaagg gcgtgaaaca taatcatggg ccggtgctgt tccgtaccca ttggctgcgg
     3961 ccgatgctgc aggtggagcg gcacaagact gtgccggcgg tgctgccgat gttctgggtg
     4021 ggcgggctga tgatgtatct gctgccgggg ctggcggcgg gggcggttgt gacctgcacc
     4081 gagggcacct cgacgagcag ccgttttgcc atgggcactg tgatggccga ggatgatttg
     4141 aaggcgatgc cacgcatggg caccatctgg gcactgggga tgtcggaaac gctcgggcct
     4201 tattcctatg ccgatgagtt gcgcgtgccg ggctatccgc tctgcgcgcc gctggaccat
     4261 gttgccgagc gcttcgagat acggattgca gacgagaatg gccagcctgt gccggaaggc
     4321 gagaggggtg agattcaagt gcgcggctat gcggtgacgc cggggctgca taagatagag
     4381 cgcgctgaat atttcgaatc cgatgggttc taccgcacgg gcgatatggg gtttgccgag
     4441 gggagcagaa ttctctttgt tggccgcaat ggcgatatga tcaagagcgc cagctccaat
     4501 gtgtcgccgg ctgaggtgga gatggaaatg cagcaactgg aggggattta ttccgcctat
     4561 gttgttggtt tgccggataa ggggcggggc caactggtgg ttgcggcggt ggtggcgcgt
     4621 gaaggagcaa aactggattt tgctgagatt gaagccacgc tgcggcggaa attatcgagc
     4681 ttcaaggtgc cgcgcgcgta tgtggagatt acgcgcgagg aggtgcctat gctgccgagc
     4741 aacaaggtgt cgcggcgcct gatggagcgg ctgatggcgg agaagttggg gcggagtctg
     4801 taaggcgccc cgattgttga gtgtcgcaat tggccccggc gggagacgcc ctttacccca
     4861 cacctagcga gccaaaactc cgtgccgctc aaccgcgctg cccagccggt tgacgaacag
     4921 accggtaacg gcggggtcca cgcgtgacgc gcgggggcca cttcatgctg cgcatcgcca
     4981 gatcgacccg tccgaaaccg ccctaaccgt catttcgttt gctgcggggc tgccctgacc
     5041 cgccggcttg gcaacaaaat cttgcaaacc cataaggtta gtacaccagc gca
//
LOCUS       DASQCV010000044         2837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1003355, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000044 DASQCV010000000
VERSION     DASQCV010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1003355"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..474)
                     /locus_tag="VEQ16_00550"
     CDS             complement(<1..474)
                     /locus_tag="VEQ16_00550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HYP62341.1"
                     /translation="MSNLRKSGGLLYALGDLRPSVDPTAWIAPTAVLIGDVRIGPGAN
                     IWFNCVLRGDTNPVIIGARTNIQDGTVVHVDHDDYPAIVGDDVTVGHAAILHACRIEN
                     NAFIGMGTTILDGAVVEEGGMLAARGFLGPGKRIGRYEMWMGSPAKFVRTMNEAER"
     gene            complement(474..1403)
                     /gene="argC"
                     /locus_tag="VEQ16_00555"
     CDS             complement(474..1403)
                     /gene="argC"
                     /locus_tag="VEQ16_00555"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019462594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HYP62342.1"
                     /translation="MSKISCKNLFIDGQAGTTGLGIAQRVAGLKELRLITLPEEERKQ
                     PAARAAAMAQADLTILCLPDEAAREAVALAPKGARILDASTAHRVAPGWVYGFAEMAP
                     GQEARIAAAQYVSNPGCYATGAIALLRPLVEQGLLPPAHHLSINAVSGYSGGGKSMIA
                     SHEAEGGPAFELYGLGLGHKHIPEIMQYGLLTQRPLFVPSVGHFTQGMLVCIPLFLEQ
                     LPGMPKATRLVELYRDYYAGGGNVVAHPGLWSENLQPEALNNTDRLEIFIAASEAHGH
                     AVAIARLDNLGKGASGAAVQNLRLMLELDAGAE"
     gene            1472..1999
                     /gene="secB"
                     /locus_tag="VEQ16_00560"
     CDS             1472..1999
                     /gene="secB"
                     /locus_tag="VEQ16_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051262 - protein tetramerization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HYP62343.1"
                     /translation="MSEQGVAPGPQPLLLNVQYTKDLSFEVPGAPAIFTQLRQPPHVA
                     INLDVQVQRLEEGDNVFEVGLAIRAEGTLTPPKSAGGTEEKPGVVFIADLVYAGVFTL
                     NNIPDNQQEPILLVECPRLLFPFARNILADVTRDGGIPPVLLGPIDFVGLWQQRRTAA
                     MAAMGAGGTPNGAPN"
     gene            complement(2234..>2837)
                     /locus_tag="VEQ16_00565"
     CDS             complement(2234..>2837)
                     /locus_tag="VEQ16_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYP62344.1"
                     /translation="VPVGVGAGIYLSEYGKNKTGSIIRFLSDVLTGTPSIVLGYFSYI
                     VFIISFGWGFSLAAAAITIAILIVPYLARITELALQQVPNTMREAAFALGGTDATVVF
                     KVILPAASSGVITGALLALAISVGETAPLIYTAGWSDYTWSGRFTHSPVAYLTYVIWT
                     FIDQPDPHSHALAYAAAFLVMLVVLAINIGVRMTVKRGVK"
BASE COUNT          550 a          943 c          858 g          486 t
ORIGIN      
        1 gcgctccgcc tcgttcatgg tgcgcacgaa cttggccggg ctgcccatcc acatctcata
       61 gcggccgatg cgcttgccgg ggcccagaaa gccgcgtgcc gccagcatcc cgccttcctc
      121 caccacggca ccgtcgagaa tggtcgtgcc catgccgatg aaggcgttat tctctatacg
      181 gcaggcatgc agaatggcgg catggccgac cgtgacatca tcgccgacga tcgccgggta
      241 gtcgtcatga tccacatgca ccaccgtgcc gtcctggata ttcgtccgtg caccaatgat
      301 cacgggattc gtgtcgccgc gcagcacaca attgaaccag atgtttgcgc ctgggccgat
      361 gcggacatcg ccgatcagca ccgccgtggg cgcgatccag gccgtgggat caacggaggg
      421 acgcagatcg cccaaggcat agagcagacc gccactcttt cgcaggttac tcatcattca
      481 gctccagcat ctaattccag catcaagcgc aaattttgca ccgccgcgcc cgaagcgccc
      541 ttgcccagat tatccagccg cgcaatcgcc accgcatgac catgcgcctc gctggcggcg
      601 ataaaaatct ccagcctgtc ggtattgttc agcgcctcgg gctgcagatt ttcgctccac
      661 aggccgggat gcgccacaac attgccgccg cctgcataat agtcacggta cagttccacc
      721 agccgcgttg ccttgggcat gccaggcagc tgctcaagaa acagcggaat gcagaccagc
      781 atgccttgcg tgaaatggcc gaccgacggc acgaaaagcg gccgctgcgt gagcaagcca
      841 tattgcatga tctcgggaat atgcttgtgc ccaaggccta gcccgtaaag ctcgaaggca
      901 ggtccgccct ctgcctcatg cgaggcgatc atcgacttgc cgccgccgga atagcccgac
      961 accgcattga ttgagagatg atgcgccggc ggaagcagcc cctgctccac cagcggccgc
     1021 aagagcgcga tcgcgcccgt ggcatagcag ccggggttgg acacatattg cgccgccgcg
     1081 atgcgcgcct cctggcccgg tgccatctcg gcaaacccgt acacccagcc cggtgccacg
     1141 cggtgcgccg tgctcgcgtc caatatgcgt gcccccttcg gcgccagcgc caccgcctcg
     1201 cgcgccgcct cgtccggcag gcacagaatg gtcaaatcgg cctgcgccat cgccgctgcc
     1261 cgtgccgccg gttgcttgcg ctcttcttct ggcagggtaa tgaggcgcag ctccttcagc
     1321 cccgccacac gctgcgcaat gcccagcccg gtggtgcccg cctggccatc gataaacaaa
     1381 ttcttgcacg aaatcttgct catgcacctc tcttatcatg gccgggccgc cgtgctaggc
     1441 gggtcacaaa ctacgagcag gaaaaccaga tatgtctgaa caaggtgtcg ccccgggccc
     1501 gcagccgctg ctgctgaacg tccaatatac caaggacttg tccttcgaag tgccaggggc
     1561 ccccgccatc ttcactcagc tgcgccagcc gccacatgtc gccatcaatc ttgatgtgca
     1621 ggtgcaacgg cttgaggaag gcgacaatgt cttcgaagta ggcctcgcca tccgcgccga
     1681 aggcactctt accccgccga aatccgctgg aggcactgag gaaaagccgg gcgtcgtgtt
     1741 catcgccgat ctcgtctatg caggcgtctt caccctgaac aacatccccg acaaccagca
     1801 ggaacccatc ctgctggttg aatgcccgcg cctgctcttc cccttcgcgc gcaacatcct
     1861 tgccgacgtc acccgcgacg gcggcatccc tcccgtgctg ctcggcccca tcgacttcgt
     1921 cggcctctgg cagcagcgcc gcaccgccgc catggcagcc atgggcgccg gcgggacgcc
     1981 gaacggggca ccgaactaag attgtgcttg tgactcgcag gggggacgct gtcccccctg
     2041 caccccccag ctaagggccg cgggccctta ggatctcatt cacttcgggt ctaaaaagaa
     2101 gagggccatc ccttgctcgt gatacacacg tgctgggatg gccctcttct ttttagaccc
     2161 gggcggggtt ctaggggcct tcggccccta gcgggggcca gggggcagag ccccctgggg
     2221 taacagcaca ctcttacttg acaccccgct tcaccgtcat gcggacgccg atattgatgg
     2281 cgagcacgac gagcatgacg aggaaggcgg cggcataggc gagggcgtgg gagtgcgggt
     2341 ctggctggtc gatgaaagtc cagatcacgt aggtgaggta agccaccggc gagtgggtga
     2401 agcggccgga ccaggtatag tcggaccagc ccgcagtata gatcagcggc gcggtttcgc
     2461 ccacggagat ggcgagcgcg agcagcgcgc cggtgatgac gcccgaggag gcggccggca
     2521 ggatgacctt gaacaccacc gtggcatcag tgccgccgag cgcgaaggcg gcttcacgca
     2581 tggtgttggg cacctgctgc agcgccagtt ccgtgatgcg cgctagatag ggcacgatga
     2641 ggatggcgat ggtgatagcc gcggcggcga gcgagaagcc ccagccaaag ctgatgatga
     2701 agacgatgta ggagaaatac cccagcacga tcgagggcgt gccggtcagc acgtcggaga
     2761 ggaagcggat gatcgagccg gttttgttct tgccgtattc ggagagatag atgcccgcgc
     2821 ccacgccgac gggaaca
//
LOCUS       DASQCV010000045         2385 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2827532, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000045 DASQCV010000000
VERSION     DASQCV010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2827532"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(209..1393)
                     /locus_tag="VEQ16_00570"
     CDS             complement(209..1393)
                     /locus_tag="VEQ16_00570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HYP62345.1"
                     /translation="MDMMSDSRTHPPAPSKRRSKPIATIPRPHGCDGIGLILQGGGAL
                     GAYQAGVYQALHEAGLEPDWVAGVSIGAVNSAIIAGNKPEDRLTKLQRFWLDITGRDP
                     YTIWPEGDAARMARNMFSAMNGILFGQPGFFRPVPFSGFLAPRGSRAATSFYDTAPLR
                     HTLQRLVDFNLINNGGMRFAVGAVEVTTANFEYFDNHETEICPEHIMASGALPPGLPM
                     VRIGHQYYWDGGLVSNTPLQHLLDNLGGKNMLVFQVDLFSAHGALPRDMPEVLSRQKD
                     IQYSSRTRSTTDHFLQVHRLRQELRDALQLIPEDKLTDEQRAQKATLERLPEINIMQL
                     IYQQKAYEGDAKDYEFSRLSMKEHWRTGYFDTRNTLAHTDWLQFDGTGGIRSFDIHRN
                     GE"
     gene            1515..2258
                     /locus_tag="VEQ16_00575"
     CDS             1515..2258
                     /locus_tag="VEQ16_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetate decarboxylase"
                     /protein_id="HYP62346.1"
                     /translation="MTRDEILNASSMPLASPSYPKGPYRFIGREYLLINYETDPEALR
                     AFLPEPLVPDGNRVYFEWMKMPDSTGFGDYEESGCGIAALYNGEPCNYSVMMYLDDES
                     PTTGGREIWGFPKKYGVPRLQVIHETLTGTLYYDDERVALGTMVYKQKPTDPADLVTG
                     LKKLNVNLKWLPGVDGKPEIAQLIGYHLTDIDVKFAFTGDARLHLVPHVNCKLADLPV
                     RKYLGGSHFKVDLTLPYGRVLHDYLAETK"
     gene            2270..>2385
                     /locus_tag="VEQ16_00580"
     CDS             2270..>2385
                     /locus_tag="VEQ16_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003113501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP62347.1"
                     /translation="MALKGKVALVTGSTSGIGLGIARALAADGADIMLNGFG"
BASE COUNT          454 a          617 c          822 g          492 t
ORIGIN      
        1 cgccttctcg tccgtgccgc cgatatacat gccggggcgg cggcggacgg gctcgagtcc
       61 ttccagaacc tcgatatggg ccgcgccgta gctgtccttg gcggggctat tctcaaaaag
      121 gtcgctcaac actcagactc cggcttggca tggggtgtcc tggttgccat ggccggtgcg
      181 cctgaggcaa ggggctgggc gccgggcctc actcgccgtt gcggtggatg tcgaaggagc
      241 ggatgccgcc tgtgccatcg aattgcagcc agtccgtatg ggccagggtg ttgcgcgtgt
      301 cgaaatagcc ggtgcgccaa tgttccttca tggagaggcg gctaaactca taatccttgg
      361 cgtcgccctc ataggctttc tgctggtaga tgagctgcat gatgttgatt tcgggtaggc
      421 gctcaagcgt ggctttctgc gcgcgctgct catctgtgag cttgtcctcg gggatgagct
      481 gcaaggcatc gcgcagttcc tggcgcaggc gatggacctg gaggaaatgg tccgtggtgc
      541 tgcgggtgcg cgaggaatat tgaatgtcct tctgacggga cagcacttcg ggcatatcgc
      601 gcggcagggc gccatgggcg gaaaacaaat ccacctggaa gaccagcatg ttcttgccac
      661 caagattatc gagcagatgc tgcagcggcg tgttggaaac gaggccgcca tcccagtaat
      721 attggtggcc tatgcgcacc atgggcaggc cgggcggcag ggcgccggag gccatgatat
      781 gttccgggca gatttcggtc tcgtgattgt cgaaatattc gaaattggcg gtggtgacct
      841 cgaccgcgcc aacggcgaag cgcatgccgc cattattgat caggttgaaa tcgaccagcc
      901 tttgcaaggt gtggcgcagg ggcgccgtgt cgtaaaaaga ggtagctgcg cgcgagcccc
      961 gcggggcgag gaagccggag aaggggacgg gacggaagaa gcctggctgg ccgaataaga
     1021 tgccgttcat ggccgagaac atgttgcggg ccatacgcgc ggcatcgcct tccggccaga
     1081 tggtgtaggg gtcgcggccg gttatatcga gccagaagcg ctgcagcttg gtgagccggt
     1141 cttccggctt gttgccggcg atgatggcgg aattgacggc gccgatggag acgccggcga
     1201 cccagtccgg ctccagcccg gcctcgtgca aggcctggta gacgccggcc tgataggcgc
     1261 cgagggcgcc gccgccctgc agaatgaggc cgataccgtc gcagccatgc gggcggggga
     1321 tggtggcgat gggcttgctc cggcgcttgg aaggggcggg gggatgggtc cggctgtcgc
     1381 tcatcatatc catgcggcta tctccttggc cggtttgtct cataaagatg gggcggctgg
     1441 aagccgtcat atgatgatca tatggaaatc gcgggaattt catctacata ggtggggcag
     1501 ccggaggatt ttgcatgacc cgtgacgaaa ttctgaatgc cagctccatg ccgctcgcat
     1561 ccccgagcta tccaaagggg ccataccgct tcattggacg tgaatatttg ctcatcaatt
     1621 acgaaaccga cccggaggcg ctccgcgcct tcctgcctga acccttggtg ccggatggca
     1681 accgggttta tttcgaatgg atgaagatgc cggactccac cggctttggc gattatgagg
     1741 agagcggctg cggcatcgcc gcgctctata atggcgagcc gtgtaattac agtgtcatga
     1801 tgtatctgga tgacgagtcc ccgacgacgg gtggacgcga gatctgggga tttccgaaaa
     1861 aatatggcgt gcccaggctg caagtgattc acgagacgct gaccggcacg ctttattacg
     1921 atgatgagcg cgtggcgttg ggcacgatgg tgtacaagca gaagccgacg gacccggcgg
     1981 atctcgtgac cgggttgaag aagctgaacg tgaatcttaa gtggctgccg ggcgttgatg
     2041 gaaagccgga aatcgcgcag ctgatcggct atcatttgac ggatatcgat gtgaaattcg
     2101 cctttacggg tgatgccagg ctgcatctgg tgccgcatgt aaactgcaag ctcgctgacc
     2161 tgccggtgcg caaatatctg ggcgggtcgc atttcaaggt ggatttgaca ctgccttacg
     2221 ggcgggtgtt gcatgattat ctcgcggaaa cgaagtgaag gaggttagca tggctttgaa
     2281 gggcaaggtg gcgctggtga cgggctcgac cagtgggatt ggcttgggca ttgcgcgggc
     2341 gctggcggcg gatggcgctg acatcatgct caacggcttt ggcga
//
LOCUS       DASQCV010000046         2809 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_506299, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000046 DASQCV010000000
VERSION     DASQCV010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506299"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(196..405)
                     /locus_tag="VEQ16_00585"
     CDS             complement(196..405)
                     /locus_tag="VEQ16_00585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62348.1"
                     /translation="MRFRPNLFLVWLLICCLVGLLLLRLIHLLFWAGFLLAAAGLLIN
                     SIVAARDEHWPGRFLTPSPPKKPDI"
     gene            complement(423..496)
                     /locus_tag="VEQ16_00590"
     tRNA            complement(423..496)
                     /locus_tag="VEQ16_00590"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(462..464),aa:Gly,seq:tcc)
     gene            complement(572..1033)
                     /locus_tag="VEQ16_00595"
     CDS             complement(572..1033)
                     /locus_tag="VEQ16_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014246689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYP62349.1"
                     /translation="MDKNLDLVLERTVKASPAQLWRAWTEPDLLKQWFAPKPYGVAKA
                     EIELAPGGAFNVVMCSPEGQAFPEKAGCILVVEPERRLVWTDGLGPLFRPNAESFMTA
                     EISMAPVDGGTRYRALVRHKSGEDRAKHEEMGFFQGWGTCLTQLEELAAQI"
     gene            complement(1026..1367)
                     /locus_tag="VEQ16_00600"
     CDS             complement(1026..1367)
                     /locus_tag="VEQ16_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012975126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYP62350.1"
                     /translation="MAQLDRVFHSLSDGTRRAVIAQLANGPASVGDLAQQHRMALPSF
                     MKHMRVLEESEIIVSRKMGRVRMCQLRPEALTMAQGWLEQERRIWEARLDRLDAFVET
                     LAEKEKPRGHG"
     gene            complement(1602..1687)
                     /locus_tag="VEQ16_00605"
     tRNA            complement(1602..1687)
                     /locus_tag="VEQ16_00605"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1651..1653),aa:Tyr,seq:gta)
     gene            1757..2806
                     /locus_tag="VEQ16_00610"
     CDS             1757..2806
                     /locus_tag="VEQ16_00610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019085858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrmH family RNA methyltransferase"
                     /protein_id="HYP62351.1"
                     /translation="MSRTPPPRNKSGRPGDDKSGRPGENRSGRPGGKPRSGPHQNKPR
                     PDRNQDRNQDRQERPRDERPHSENRLSLPGGAPRPERGTPRPQGREGNREHGLGRGQN
                     RAPATPAGTVWLYGTHAIAAALKNPSRLFRRLVITEEAQASLAAECPQPWPIPPEITP
                     RDKIDQLLGARQNSGIVHQGIALLTDQLQAPALLDAIQRPGPVLVLDQIFDPRNVGAL
                     MRTAQAFGACAVIAQDRNAPEETGALAKAASGALETIPLLRTVNIARALIVLKSAEFW
                     VVGLDGHAPTKLNGPSFKQRRVALVLGSEGEGMRRLTRETCDEVCALAMPGGMESLNV
                     SAAGAVALYEITRKE"
BASE COUNT          567 a         1012 c          805 g          425 t
ORIGIN      
        1 ccccagcctc cggttttgga gaccggcgct ctagccaatt gagctacgcc cctatccgta
       61 ccagcacgga aagcgccttc cacacgttgg cgcgtccaat gtcaagtgtc ggtcatcgac
      121 ggaggtactt ttacggcagg ccgaaccctc tggccagcca tgacgggaca gaaaatccgc
      181 ggggatgcct ccctctcaga tatcaggttt tttcggcggc gagggggtaa gaaacctgcc
      241 gggccagtgt tcgtcccgcg cggccacgat gctgttgatg agcaaaccgg ccgcggccag
      301 cagaaagccg gcccagaaga gcagatggat cagccgcagc agcaacaagc cgacaaggca
      361 gcagataagc agccacacca ggaacagatt cggacgaaac cgcattgcct gatccccaaa
      421 actggagcgg gtgacgggaa tcgaacccgc acagccagct tggaaggctg ggactctacc
      481 attgagctac acccgcgcgc ctccccgcat aagccattgg ccagggggtc gtaaaccctc
      541 tgaccgaatc gaccgcaagg aaaacgcggc gtcagatctg cgcggccagc tcctccagct
      601 gcgtcaggca tgtgccccag ccctggaaga accccatctc ctcatgtttc gcccggtcct
      661 ccccgctttt atggcgcacc agcgcgcggt agcgcgtgcc gccatcaacc ggcgccatgg
      721 agatttccgc cgtcatgaag gattcggcat tgggccggaa cagcggccca agcccatcgg
      781 tccagaccag acgccgttcc ggctccacaa ccagaatgca gcccgccttt tccggaaaag
      841 cctgcccctc gggcgagcac atcaccacgt tgaacgcccc gcccggcgcc agctcgattt
      901 cggccttggc cacgccatag ggcttcggcg cgaaccattg tttcagcaga tcgggctccg
      961 tccaggcccg ccaaagctgg gccgggctgg ccttcaccgt gcgctccagc acgagatcga
     1021 gatttttatc catgtccacg cggtttttcc ttttcagcca atgtttcgac aaacgcatcc
     1081 agccggtcca ggcgggcttc ccatatgcgc cgctcctgct ccagccagcc ttgcgccatg
     1141 gtcagcgcct cgggccgcag ctggcacatg cgcaccctcc ccatcttgcg ggagacgata
     1201 atctcgctct cctccagcac gcgcatatgt ttcatgaagc tgggcagcgc catgcgatgc
     1261 tgctgcgcca gatcccccac actcgccggc ccattcgcca gctgcgcaat caccgcacgc
     1321 cgcgtcccgt ccgacaaaga gtgaaaaacc cgatcaagct gagccatatg gctaagtgac
     1381 agcacccaag ccaccccgtc aagacaataa tccatctagc taagtatcgg gctacaaatt
     1441 gtcggtgaga cgttgcgcca cccttgcttc aaaatgtgct caggtgggtc agctggcgtg
     1501 cagattcgag caccggagcg gagcgtactt aatgtacgcg agcaccggag cgcagaagat
     1561 gcgcgtcaga tggcccgcct gagtgcattt tgaagcaagg gtggtggaag gggttggatt
     1621 cgaaccaacg taggcgcacg ccaacggatt tacagtccgt cccctttagc cactcgggca
     1681 cccttccgtg tgggggcccc tttgccccga atccggcgcg gttgtcaacg caaaggcagg
     1741 gggatagtga aacgccatga gccgcacgcc cccgccccgc aacaaatccg gccgtcccgg
     1801 cgacgataaa tctggccgcc ccggcgagaa tcgatctggc cgccccggcg gcaagccgcg
     1861 ctccggcccg caccagaaca agccgcgccc cgatcggaat caggaccgga atcaggaccg
     1921 gcaggagcgc ccgcgcgacg agcgcccgca cagcgaaaac cggctgagcc tgccaggcgg
     1981 cgcacccagg cccgaacgcg gcacgccccg cccgcaaggc cgcgaaggca accgcgagca
     2041 cggccttggc cgcggccaga accgcgcccc cgccacccca gccggcacgg tctggctgta
     2101 tggcacccat gcgatcgcgg cggccctcaa aaacccgtcc cgcctcttcc gccgcctcgt
     2161 catcacggaa gaagcgcaag cctccctcgc cgccgaatgc ccgcagccct ggcccatccc
     2221 gccggaaatc acgccccgcg ataaaatcga ccagctcctg ggcgcgcggc agaatagcgg
     2281 catcgtccac cagggcatcg ccctgctgac cgaccagctc caggcccccg ccctgctgga
     2341 cgcaatacaa cgccccggcc cggtcctggt gctcgaccag attttcgacc cccgcaatgt
     2401 cggcgccctc atgcgcaccg cccaggcctt cggcgcctgc gccgtcatcg cccaggaccg
     2461 caatgcaccc gaggaaaccg gcgccctggc caaagccgcc tccggcgcgt tggaaaccat
     2521 cccgctgctg cgcaccgtca acatcgcccg cgccctcatt gtgctgaaat cggccgaatt
     2581 ctgggtcgtc ggcctggacg gccacgcccc caccaaactc aacggcccca gcttcaagca
     2641 gcgccgcgtc gctttggtgc tgggcagcga aggcgaaggc atgcgccgtt taacgcgcga
     2701 gacatgcgac gaggtctgcg ccctggccat gccgggggga atggagagct tgaacgtatc
     2761 agcggccggg gcagtcgcgc tctacgaaat tacccggaaa gaataagac
//
LOCUS       DASQCV010000047         4205 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2993769, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000047 DASQCV010000000
VERSION     DASQCV010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4205
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2993769"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(299..1018)
                     /locus_tag="VEQ16_00615"
     CDS             complement(299..1018)
                     /locus_tag="VEQ16_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HYP62352.1"
                     /translation="MKCLIVAAGQGTRLREKGALKPLIPIEGVPLIERVIANARAGGA
                     DEFFAVTGYRSDELQAQLGELSARADVSITRIFNRNWARANGVSVLAAKQFIDEPFLL
                     TMCDHLVDPEIFRALISAGTEPDTVTLAVDFNIENPLNDPEDVTRVKCEGTMLKHIGK
                     VIRDFNCFDTGVFLCTPVMFEALSESQARGDDSISGAMNVLAEWGKARVFDIGDKVWV
                     DVDDPIAFGKAEMLLEQGQLS"
     gene            complement(1015..2148)
                     /locus_tag="VEQ16_00620"
     CDS             complement(1015..2148)
                     /locus_tag="VEQ16_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HYP62353.1"
                     /translation="MAGKSGIRIAIAGIGNCASSLIQGIHYYTPARCRENVIGLMHTE
                     IGGYYPHDISVVAAFDVDARKVGQDVHRAIFAKPNCTKVFQTDIPDSGVIVQMGQVLD
                     GISEHMDSYEDDRTFIKSDARELTKAEIVAELRRSRTDVLLNYMPVGSEKAARFYAEC
                     ALEAGVGFINNMPVFIASDKSFADRFAARNVPIIGDDIKSQLGATITHRVLTDLFAKR
                     GIKLLRTYQLNTGGNTDFLNMKNQERLASKKKSKTEAVQSVAKTRLENENIHIGPSDY
                     VPWQNDNKICFIRMEGQMFGDVPMDLELRLSVQDSPNSAGVVIDMIRCCKIALENGVG
                     GVLAGPSAYFCKHPPAQVTDDMAYEMTEEFIASCTAEKVAAAE"
     gene            complement(2295..3251)
                     /locus_tag="VEQ16_00625"
     CDS             complement(2295..3251)
                     /locus_tag="VEQ16_00625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012553820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP62354.1"
                     /translation="MTIPARVHFCWIGPALPWAYVFAVLSAAARGEMDEVILHHTDEL
                     ADGPELAALRQAKGVRLERLDPQACLGLAEAQLGLAGQLTALYRGLASPVQRADVLRA
                     AILFLQGGIYLDLDTVTVASLRPLLQAPQFVGTEYIVWPHWVRASRSPLVWAKHLALD
                     VLRKMLRLAPNGWRAFRLVEDWYFPGVNNAIMGAAPGAPLFAAYLRAMAQLPPAQRTQ
                     PYALGPDLLQGLVYQFPEAGLTLHKPAVFYPLAPEISEHWFRPTRRAQPARALRPQTK
                     VVHWYASVRSKPHVAKIDPDFVRAHREIQLYSALVCAALPGL"
     gene            3406..>4205
                     /locus_tag="VEQ16_00630"
     CDS             3406..>4205
                     /locus_tag="VEQ16_00630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011253571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYP62355.1"
                     /translation="MVYANFGTIAEALDYAAEGVTGFNIYSGKGVLTEILPYKTLRKQ
                     ALDLAGRLLGAGLKPGERVGLVAESDGDFLRAFCACQYAGLVPAPLPLPAAFGGREGY
                     IAHLRRMVETAQAHALFGPDMLEGWIAEAAEGLNLQLSGSYKQLAAAPSAPLPPQNPD
                     ALAYLQFSSGSTRFPLGVAVTQRAFMANAHYMARDGLAVTEEDRCTSWLPFYHDMGLV
                     GFFLMPMACQLSVDILPTREFARRPLLWLELISRNGGSVSFSPSFGYEL"
BASE COUNT          825 a         1364 c         1213 g          803 t
ORIGIN      
        1 caccggcggc aatgccgcag cccatgccgg ccagcgagac ctggttcggc gtaatccccg
       61 ctcgcgcaaa ataaggcaca atccaggccg agagcgggtg gatgacataa aggttgctcg
      121 gctcctcgat ctccgccgcg cgccgcacag gctcactcat cccaggctcc taaactcgtc
      181 gcggcacgat cctcaaggtc gaagatttct tgcgccgctt gcgtcgcgat gacgaagcaa
      241 cgaagtcgcg taatctgaat cgggacgcca gccaaacttc aaaaaagcgg caaagaccct
      301 aagagagctg cccctgctcc agaagcatct ccgccttgcc gaaggcaata ggatcatcga
      361 catcgaccca gaccttatcg ccaatgtcga acacccgtgc cttgccccat tccgccagca
      421 cattcatggc gcccgagatg ctgtcgtctc cgcgtgcctg gctttcactt agcgcctcga
      481 acatcaccgg cgtacacagg aacacgccag tatcgaaaca attaaagtcg cggatcactt
      541 tgccgatatg ctttagcatt gttccctcgc atttcaccct ggtcacgtcc tcggggtcgt
      601 tgagcgggtt ctcaatgttg aaatccacgg ccagcgtcac cgtatccggc tctgtgccgg
      661 ccgagatcaa ggcccggaaa atctccggat caacgagatg gtcgcacatg gtcagcagga
      721 acggctcgtc gatgaactgc ttcgccgcca gcacggacac gccattggcg cgggcccaat
      781 tgcgattgaa gatacgcgtg atgctcacat ccgcgcgcgc ggaaagctcg cccaactgcg
      841 cctgcagctc gtccgaccgg tagccggtca cggcgaaaaa ctcgtccgcg ccgcccgccc
      901 gagcattggc aatgacgcgc tcgatgagcg gcacgccttc tatggggatc agcggcttca
      961 gagcgccctt ttccctcagc ctagttccct ggccggcggc gacgatcagg cacttcattc
     1021 ggcggcggcg actttctcag ccgtgcagga ggcgatgaat tcctccgtca tctcataggc
     1081 catatcgtcc gtcacctgcg ccggcggatg cttgcagaaa taggcggaag gcccggccag
     1141 cacgccgccc acgccgtttt ccagcgcgat tttgcagcag cggatcatgt cgatgaccac
     1201 gccagcggaa ttcgggctgt cctgcaccga gaggcgcagt tccagatcca tcggcacgtc
     1261 gccgaacatc tgcccttcca tgcggatgaa gcagatctta ttgtcattct gccagggcac
     1321 ataatcgctc gggccgatat ggatattctc gttctccagc cgcgtcttgg ccacggactg
     1381 cacggcttcc gtcttcgact tcttcttcga agccaggcgc tcctggttct tcatgttcag
     1441 gaagtcggtg ttgccgcctg tgttgagctg ataggtgcgc agcaatttta tcccgcgctt
     1501 ggcgaacaga tcggtcagca cgcggtgcgt gatggtggcg ccgagctgcg atttgatgtc
     1561 gtcgccgatg atggggacgt tgcgcgcggc gaagcggtcg gcgaagctct tatcggaggc
     1621 gatgaagacc ggcatattgt tgatgaagcc cacgcccgcc tccaacgcgc attcggcgta
     1681 gaagcgcgcc gccttctcgg agcccaccgg catatagttc agcagcacat cggtgcggct
     1741 gcggcgcagc tcggccacga tttcggcttt ggtcagctcg cgcgcatcgg atttgataaa
     1801 ggtgcggtca tcctcatagg agtccatgtg ctcggaaatg ccgtcaagca cctggcccat
     1861 ttgcacgatc acgccgctat ccgggatgtc cgtctggaac accttggtgc agttgggttt
     1921 ggcgaaaatc gcgcgatgta catcctggcc caccttgcgg gcatccacgt cgaaggcagc
     1981 gacaacgctg atgtcgtggg gataataacc gccgatctca gtatgcatca gcccgatgac
     2041 gttctcgcgg cagcgtgccg gcgtataata atggatgccc tgaatcaggg agctggcaca
     2101 attaccgata ccggcgatcg cgatgcggat gccgctttta cctgccattt gaaacctcat
     2161 ctgcctgaaa acgccggcca tccgcgcgta tatgaatgaa ttgttaccct acaagcttgc
     2221 cagatatgtc gcaagtatga caggggacaa atgaatcaat gatttagcgt cagattgtgg
     2281 cagacatgcg cttgctacag gccaggaaga gcagcacaga ccagagcgct ataaagctgg
     2341 atttctctat gtgcgcgcac gaaatcggga tcgattttag ccacatgagg tttgctgcgc
     2401 acggaggcat accagtgcac cacctttgtc tgcggccgca gcgcccgcgc aggttgcgca
     2461 cggcgcgtcg ggcggaacca atgctcggaa atttccggcg ccagagggta aaacaccgcg
     2521 ggtttatgaa gcgtgagccc tgcctccggg aactggtaga ctagtccctg cagcaaatcc
     2581 ggccccagag cgtaaggttg cgtgcgctgc gccggcggca attgcgccat ggcgcgcaga
     2641 taggcggcaa aaagcggcgc cccaggtgcc gcgcccatga tggcattatt tacgcccgga
     2701 aaataccaat cttccaccag ccggaaggcg cgccagccat ttggcgccag gcgcagcatt
     2761 tttcgcaaca catcgagcgc cagatgcttc gcccatacca acggcgagcg cgaggcccgc
     2821 acccaatgcg gccagacgat atattccgtg ccgacaaatt gcggcgcctg cagcagtggc
     2881 cgcagcgagg cgacggtgac agtatcaaga tcgagataga tgccgccttg caggaacaaa
     2941 atcgccgcgc gcagcacatc ggcccgctgc accgggctcg ccagcccacg gtagagcgcc
     3001 gttagctgcc ctgcgagccc gagctgcgcc tcggccagac ccaggcaggc ctgtggatcg
     3061 agtcgttcca gcctcacccc tttcgcttgc cgcaatgccg ccagttccgg cccgtcagcc
     3121 aattcgtcag tgtgatgaag aattacctca tccatctccc cccgcgccgc cgcggagaga
     3181 acggcaaaca cataagccca tggcagggca ggtccgatcc agcagaaatg cacgcgggca
     3241 ggaatggtca tggcgggaga taggcgtcgg tgcggccggc cgtcaaatgc agccctgtca
     3301 cgccattgcc atgttgaggc aggtctgtta gccggaacaa ctgtgccgca gctagaaata
     3361 tcttccaaga ctgagcctac ccccacccgc acaccgggcc gcgccatcgt ctacgccaat
     3421 ttcggcacca ttgccgaggc gctggattac gctgccgagg gtgtcacagg cttcaatatc
     3481 tattccggca agggcgtcct caccgagata ttgccgtata aaaccttgcg caaacaggcg
     3541 cttgacctgg ccggccggct gctcggcgcc gggctgaagc cgggcgagcg tgtcgggctg
     3601 gtggctgaga gcgacggcga tttcctgcgc gccttctgcg cctgccagta tgccgggttg
     3661 gtacccgcgc ccctaccgtt gccggccgcg ttcggcggac gcgagggcta tatcgcgcat
     3721 ctgcgccgca tggtcgaaac cgcccaggcc cacgctctgt tcggcccaga catgctggaa
     3781 ggctggattg ctgaggccgc cgaggggctg aatctgcagc tttccggcag ctataaacag
     3841 cttgccgccg cgccgtccgc ccctctgcca ccgcaaaacc cggatgcgct cgcctatctg
     3901 caattctcct ccggcagcac gcgtttcccg cttggcgtcg ccgtcaccca gcgcgccttc
     3961 atggccaacg cccattacat ggctcgcgac ggcctcgccg tgacggaaga agaccgttgc
     4021 accagctggc tgcctttcta tcacgatatg ggcctggtcg gcttcttcct catgccgatg
     4081 gcctgccagc tctcggtcga catcctgccc acccgcgaat tcgcccgccg cccgctgctc
     4141 tggctggagc tcatcagccg caatggcggc tccgtctcct tcagcccctc cttcggctac
     4201 gagct
//
LOCUS       DASQCV010000048         2864 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1666866, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000048 DASQCV010000000
VERSION     DASQCV010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2864
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1666866"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..438)
                     /locus_tag="VEQ16_00635"
     CDS             complement(<1..438)
                     /locus_tag="VEQ16_00635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62356.1"
                     /translation="MEILDLRHFSSADLRPLLAQEVQLWGKTLSWDYRSSSEMILRYV
                     DAKILPGYAAVERGSLMGYAFFVYEGSKGVIGDLFVAPGRSDVRAVEIRLLDHMIETL
                     QQSPGIHRVEAQLLAHPTGELAELFLANGFQRFRRLFLQLGLSG"
     gene            complement(580..2220)
                     /locus_tag="VEQ16_00640"
     CDS             complement(580..2220)
                     /locus_tag="VEQ16_00640"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYP62357.1"
                     /translation="MQDPKQFGERARRSTDLLALIAICGFLFFAGLQVIGLVGVDEPR
                     YAQVAREMLQRHDWVTPVLWGQPWLEKPPLYYWCAVLAYKAAGSATGWAARLPSAVLS
                     TLMVFFIYVWGRRFRRGMQLDAALITAACAMVIGFGRAASTDMPLTATFTIAMLCWYA
                     WYESQNRTWLVGFYLSAGLAALAKGPVAALLAALILAVFAALRRDWRLLARTLWMPGV
                     LLYALVTLPWFLAVQRANPEFFRLFILQHNLARYTSNIYRHQQPFWYYLPAVLLGLVP
                     WVVFVLVALIDALRDWRYSLRQPAGKEDLRTYLAIWFLLPIGFFSLSQSKLPGYILPA
                     IPAGTILLADFILRREQEGDKPGLPLAGAHAVLCAALMVAALVVPFRLVHLAISRPAL
                     IVAGALAAIGVLSVMASLRTQGYRMLRFTTLVPLLIAYALVLRGTAPMIDVLQSARPV
                     QLTLSETAIGEIATVAVYDVPRALEYGLGFYRDQKIFSYERNEIPDGDHLVVAAAGSK
                     GELEYRLQGRRVTYVGGFAPQHLDFYLVSGSGQPQARP"
     gene            complement(2244..>2864)
                     /locus_tag="VEQ16_00645"
     CDS             complement(2244..>2864)
                     /locus_tag="VEQ16_00645"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HYP62358.1"
                     /translation="ADVNWIDPSACATAEMIFRLARQAGVRISAEVATCLYTAVLTDT
                     GSFCFGGTTERTFALAQELVRCGADPVKIAHNVYFSTQLSKMRLLGAALGTLHQHGSL
                     AWMHVSHRTMERCNAHEEDCEGLVNYALAIQGIEVALFFREQPGGRFRVSLRSKGAVN
                     VAAVAECFGGGGHQCASGCAIDGPLSVATERMIAQLHIRGYHNKVQ"
BASE COUNT          613 a          889 c          910 g          452 t
ORIGIN      
        1 accggagagg ccgagctgca agaacaagcg gcgaaagcgc tggaacccgt tagccaggaa
       61 cagttcggcc agctcgccgg tggggtgggc cagcagctgc gcctctacgc gatggatccc
      121 gggagactgt tgcagggttt cgatcatgtg gtcgagcagg cggatctcga cggcgcgcac
      181 atcggaacgc ccgggagcca cgaacaggtc gccgatcacg cccttgctgc cttcatacac
      241 aaagaatgcg tagcccatca ggctgccacg ttccacggcg gcatagccgg gcagaatctt
      301 ggcatcgaca tagcgcagga tcatttccga tgagctgcgg taatcccagg agagggtttt
      361 gccccacagc tgaacttcct gcgccagcaa gggtcgcagg tccgcggacg aaaaatgcct
      421 aagatcgagg atttccacgc tgatcgccgg tctgactgga ttgcgtactg ccatacatcg
      481 atgtccccgc aggtcgactt ggccggcagc cgacctatgg acgcggtttc agtctattgt
      541 ggcggcaagg gggacgcaaa ccttcgaacc agcgttctcc tagggcctgg cctgcggttg
      601 gccgctgccc gagaccaggt agaaatcaag gtgctgcggt gcgaagcctc caacataagt
      661 cacgcggcgt ccttgcaatc gatattccag ctcgcccttc gatcccgcgg cggctaccac
      721 caggtgatcg ccgtcgggaa tttcattgcg ctcgtagctg aaaattttct gatcgcggta
      781 gaagccgaga ccatactcaa gggcgcgcgg aacgtcatag accgcgacgg tggctatttc
      841 gccgatggca gtctccgaca atgtcaattg cacgggccgc gccgattgga gcacatcgat
      901 catgggggcg gtgccgcgca gcaccagagc ataggcgatc agcagcggca ccagcgtggt
      961 gaagcgcaac atgcggtatc cctgggtgcg caggcttgcc atcacggaca gcactccaat
     1021 cgccgccagg gcgccagcca cgatgagcgc cggccggctg attgcgagat gcacgagccg
     1081 gaagggaacc accagtgccg ccaccatcag ggcagcacac agaaccgcgt gggcgccggc
     1141 cagcggcaga cctggcttgt cgccctcctg ctcccggcga agaataaaat ctgccagcag
     1201 gatggtaccc gcgggaatcg ccggcaggat gtatcccggc agcttcgact gcgacagcga
     1261 aaagaacccg atcggcagca ggaaccagat tgccaggtag gtgcggaggt cttccttgcc
     1321 tgctggctgg cggagtgaat aacgccaatc gcgcagagcg tcgatgagcg caaccaggac
     1381 aaaaactacc cacggtacca atcccagcaa aaccgccggc aggtaatacc agaatggctg
     1441 ctggtggcgg taaatgttgc tggtgtatcg cgccaggttg tgttgcagga taaagagccg
     1501 gaagaactcc gggttggccc gctgcacggc gaggaaccag ggcagtgtca ccagggcata
     1561 gagcaggacg ccaggcatcc aaagagttcg cgccagcagt cgccagtcac gccgtagagc
     1621 ggcgaaaacc gcgaggatga gggcggccag aagggcagct accggaccct tggccagggc
     1681 cgccaagccg gccgacaagt aaaaccccac cagccaggtg cggttctgcg attcgtacca
     1741 agcgtaccag cagagcatgg cgatggtgaa agtcgccgtc agcggcatgt ccgtgctggc
     1801 ggcgcgacca aacccgatta ccatggcgca cgcggcggtg ataagcgccg cgtcgagctg
     1861 catgccgcgg cgaaatcgcc gcccccacac ataaatgaag aagaccatca acgtgctcag
     1921 cacggccgaa ggcaggcgcg ccgcccagcc ggtggcgctg cccgcagctt tatacgccag
     1981 cacggcgcac cagtagtaca aaggaggctt ctccagccag ggctgacccc acagcaccgg
     2041 cgtcacccag tcgtggcgct gcaacatctc gcgtgcgacc tgcgcgtagc gcggttcgtc
     2101 caccccgacc aggccaatga cctggaggcc ggcaaagaac aggaatccgc aaattgcgat
     2161 gagagcgagc agatcggtgg accgccgggc gcgctccccg aattgcttgg gatcctgcaa
     2221 cctggaattc gcgggggtga tgactactgc accttgttgt ggtatccgcg gatatgtaac
     2281 tgcgcaatca tacgctcggt agcgacggac agcgggccat cgatggcgca tccgctggcg
     2341 cattggtgac cgccaccacc gaagcactcg gcaaccgcgg caacgttgac cgcacctttg
     2401 cttcgcaggc ttacccggaa gcggcccccg ggctgctccc ggaagaacag agcaacttca
     2461 atcccctgga tggcaagggc atagttgacc agcccttcgc agtcctcctc gtgggcgttg
     2521 cagcgctcca tggtgcggtg ggagacgtgc atccaggcga ggctgccgtg ctgatgcagg
     2581 gtgccgagcg cggctcccag caacctcatc tttgacagct gggtcgagaa gtagacgttg
     2641 tgcgcgatct ttaccggatc ggcaccgcag cgcaccagct cctgggccag ggcgaaggtc
     2701 cgctccgtgg ttccaccaaa acaaaaggaa ccggtatcgg tgaggactgc ggtgtacagg
     2761 caagtcgcca cctcggctga aatcctgacc ccggcctggc gcgccaggcg aaagatcatc
     2821 tccgcggtgg cacaggcgct gggatcgatc cagttcacgt cggc
//
LOCUS       DASQCV010000049         1553 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_837976, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000049 DASQCV010000000
VERSION     DASQCV010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_837976"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..639
                     /locus_tag="VEQ16_00650"
     CDS             <1..639
                     /locus_tag="VEQ16_00650"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HYP62359.1"
                     /translation="AAATQTLNDAKTSLAALRATGAGQARDITAPFAGIVTTIAATPG
                     GALPAGTLLLRLAAGSGLSIVASLPEHDALRVRPGAQASLTLLNSNATMPAIVAQRAA
                     MLDPQTGLINITLIPQGTPLLGEPVAARISAGSVTGYPVPRAAVLNDAQGDYVYQLDA
                     KDIAHRVNVRVLDSEGDTSILAPGLDASMRLATTGAYQLSDGMSATLQGNPP"
     gene            636..>1553
                     /locus_tag="VEQ16_00655"
     CDS             636..>1553
                     /locus_tag="VEQ16_00655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP62360.1"
                     /translation="MSFFPWLDRHRRSILIAAAALAVAGLTAALSLPIGLYPDASFPR
                     LRFNIEAASQPAAQMVLQTTQPAEQAIRAVPGVVDVTSITSRGSAQIIVDFAWGTDMT
                     AATLAANAAMTQSLPNLPPGTNYTVLHMTPNVFPFMAYALTSNSVSQARLQDLAAHRL
                     VPLLSGVQGIARAQVQGGDVSEVEVDADPRRLAAFHLTLDDLVQALQAANTLQSVGRV
                     EDHEQLYLLMATNAMHGLTDVQQTVLRAGPSGVVRLGDVANVHMGAVPQFLGVQANGK
                     RAVTLLLYQQPGTDMVRIARAADAALAGFA"
BASE COUNT          240 a          564 c          492 g          257 t
ORIGIN      
        1 gccgccgcca cgcaaacgct gaatgatgcc aagacgagcc tcgccgcgct gcgcgccacc
       61 ggcgcggggc aggcgcggga tattacggcg cccttcgccg gcattgtcac caccattgcc
      121 gccacgcctg gcggagcgct acctgccggt accttgctgc tcaggctcgc cgctggtagc
      181 ggactttcga ttgtggcgag cctgcccgag catgatgccc tgcgcgtgcg gcccggcgcg
      241 caagccagcc tcactctgct caacagcaac gcaacaatgc ccgccatcgt cgcgcagcgc
      301 gccgccatgc tcgacccgca gacagggctc atcaacatca ccctcatccc gcaaggcacg
      361 ccactgctcg gcgagccggt ggcggcgaga atctccgccg gcagcgtcac cggctacccc
      421 gtgccgcgcg ccgccgtgct caatgacgcg cagggcgatt atgtttatca gctcgacgcc
      481 aaggacatcg cccaccgcgt caatgtgcgc gtgctggatt ctgaaggcga caccagcatc
      541 cttgccccag ggctcgacgc cagcatgcgc ctcgccacca cgggcgccta ccagctctcg
      601 gacggcatga gcgcaacgct gcagggcaac ccgccgtgag ttttttcccc tggctcgacc
      661 ggcatcgccg ctccatcctc atagcggccg cagcgctcgc cgtggccggg ctgacggccg
      721 ctctgtcctt gcccatcggc ctgtatccgg atgcgtcctt cccgcgcctg cgcttcaata
      781 tcgaggccgc cagccagcct gcggcgcaga tggtgctgca gaccacccag cccgccgagc
      841 aggccatccg cgccgtgccc ggcgtggtgg atgtcacttc catcacctcg cgcggctcgg
      901 cgcagatcat tgtggatttc gcctggggca cggatatgac cgccgcgacg ctggcggcga
      961 atgcggccat gacgcagagc ctgcctaacc tgccacctgg cacgaactac accgtgctgc
     1021 atatgacgcc gaacgtgttt cccttcatgg cttatgcgct gacctccaac agcgtgagcc
     1081 aggccaggct gcaggatctt gccgcccacc ggctcgtgcc gctcctctct ggcgtacagg
     1141 gcatagcccg cgcccaggtg cagggcggcg atgtgagcga ggtggaggtg gatgccgacc
     1201 cgcgccgcct cgccgccttc catctcacgc tcgatgatct ggtgcaggcg ctgcaggcgg
     1261 ccaacacgct gcaatcggta gggcgggtgg aggatcatga gcagctctat ctgctcatgg
     1321 cgaccaacgc gatgcatggg ctgacggatg tgcagcagac cgtgctgcgc gccgggccgt
     1381 ccggcgtggt gcggctcggc gatgtcgcca atgtgcatat gggtgccgtg ccgcaatttc
     1441 tcggcgtgca ggccaatggc aagcgcgccg ttactttgct gctctaccag cagccgggca
     1501 cggacatggt gcgcatcgcc cgcgccgcgg atgcggctct ggccgggttc gcg
//
LOCUS       DASQCV010000050         2986 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3159646, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000050 DASQCV010000000
VERSION     DASQCV010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2986
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3159646"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..669
                     /locus_tag="VEQ16_00660"
     CDS             <1..669
                     /locus_tag="VEQ16_00660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493862.1"
                     /note="catalyzes the hydrolysis of allophanate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allophanate hydrolase"
                     /protein_id="HYP62361.1"
                     /translation="ASFTVAQMQADPLGANAKLGLYTNFVNFMDLAAIALPAGFGANG
                     LAYGVTLIAPAFTDAALAALADGLHRALGAGAGKSKTQPQTSLPPPAPEVTLVVAGAH
                     LSGMVLNHELLALDARLIAATRTAPGYKLFALDTIPPKPGLVHSPGFAGAGIAVELWS
                     LTAEALGKFVAALPAPMGIGKVQLADGSTHPGFLCEAWALEGAEDITPHGGWRAYRAA
                     LAVK"
     gene            881..2083
                     /locus_tag="VEQ16_00665"
     CDS             881..2083
                     /locus_tag="VEQ16_00665"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYP62362.1"
                     /translation="MSTTLDASQTGAKTSIKVIDADTHYTEPHDLWTSRAPAKWRDRV
                     PQVKLLDGQMSWVIDGDKSIGTGAHPNSAILKDGSKVRKLDQFLGLKFADVHLGSSSV
                     KERLAVMDETGIYAQIVYPNILGFGGQAAAKVDVELRQICVEIYNDAMAELQETSGQR
                     LFPMALLPWWDVQAAVKETERCAKLGLRGININSDPHLIKDEDGNFIPDLGRPHWDPL
                     WEVCAGQHMPVNFHIGASETAIDWMGQQGWPSLPRDLRSGISGAMLFFNNGKVVSNLI
                     YSGVLDRFPALKFVSVESGVGWIPFLMEALDYQLLEIAEGKNFALKPSEYFKRNFYAC
                     FWFERRDISATLRKVGIDNVLFETDFPHPTGLYPIENLEERLAGLTREERAKALGGNA
                     ARLYNITI"
     gene            2102..>2986
                     /locus_tag="VEQ16_00670"
     CDS             2102..>2986
                     /locus_tag="VEQ16_00670"
                     /inference="COORDINATES: protein motif:HMM:NF022586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2889 domain-containing protein"
                     /protein_id="HYP62363.1"
                     /translation="MLSSPPKSPAGPAPFRQPGSVRRTSSIDADWPEGRNGAMRLIGR
                     ARDIATPPDATDIVLLAQGAFEARIDPDRHVLALNASPSPAGLPQLVGERAGGHLRRA
                     IDRVLPEERRGGTPLHLILDDIAGTSLIAPWAWSRWDPDWLAQMQARKADPKYAAAFN
                     RENICTGLRTGSSGLSLMAEGVDAGQLRQPEDETGWHDFPAAPGPGMRRARRIDVARD
                     QLIRIDAHFQDSATMPDGTRAALHEYRILGSADPVSLEILSLEAQPRVLPFVECPDAA
                     ANMHRLVGKPLPLLREIVL"
BASE COUNT          536 a         1056 c          902 g          492 t
ORIGIN      
        1 gccagtttca cggtggcaca gatgcaggcc gacccgctcg gcgccaacgc caagctcggg
       61 ctctacacca atttcgtgaa tttcatggac ctcgccgcca tcgccttgcc cgccgggttc
      121 ggcgccaacg gcctcgccta tggcgtcacc ctcatcgccc ccgccttcac cgatgccgcc
      181 ctggcggcgc tggcagacgg gctgcaccgc gccctcggcg ccggcgccgg caaaagcaaa
      241 acccagccgc aaaccagcct gcccccgccc gcgcccgagg ttacgctcgt ggtggccggt
      301 gcgcatctct ccggcatggt gctgaatcac gagcttctgg cgctggatgc gcgcctcatc
      361 gccgccacgc gcaccgcgcc tggctataaa ctcttcgccc tggacaccat tccgcccaag
      421 cctggtctcg tccacagccc cggcttcgct ggtgccggca tcgcggtgga gctctggtcg
      481 ctcaccgcgg aggcgctggg caaattcgtc gccgccctgc ccgcgcccat gggcatcggc
      541 aaggtacagc tcgccgatgg cagcacccat cccggcttcc tgtgcgaggc ctgggcgctg
      601 gagggcgctg aggacatcac cccccatggc ggctggcgcg cctaccgcgc ggcgctggcc
      661 gtgaaatagc cctcgcaacc catcggtttc accgatgacc catatcctga gatgccgcat
      721 ttgctgcaag gggcagcggg gctaactctg gcaacggaaa gctttggcgc cggccaaatc
      781 ttgacgcgga cgccgatcaa cgataaaaaa ccaagcgctt gctacaattt catccggcgc
      841 cgaagccatt tgaaatgaaa tgtggaaggg ggaacaagcc atgagcacga cgttggacgc
      901 atcgcagaca ggggcgaaga ccagcatcaa ggtgatcgac gcggacacgc attacaccga
      961 gccgcatgat ctctggacca gccgggcgcc cgccaaatgg cgcgaccgcg tgccgcaggt
     1021 gaagctgctg gacgggcaga tgagctgggt catcgatggc gacaaatcca tcggcactgg
     1081 cgcgcatccc aacagcgcca tcctcaaaga tggcagcaag gtgcgcaaac tcgaccaatt
     1141 cctcggcctc aaattcgccg atgtgcatct cggctcctcc agcgtgaagg agcggctcgc
     1201 cgtgatggac gagaccggaa tctatgccca gattgtctat cccaacattc tcggcttcgg
     1261 cggccaggcg gcggcgaaag tggatgtcga gctgcgccag atctgcgtcg aaatctataa
     1321 cgacgcgatg gccgaattgc aggaaacctc cggccagcgc ctcttcccca tggcgctgct
     1381 gccctggtgg gatgttcagg cggcggtgaa ggagaccgag cgctgcgcga aactcggcct
     1441 gcgcggcatc aacatcaatt ccgacccgca tctgatcaag gatgaagacg gcaatttcat
     1501 ccccgatctc ggccgcccac attgggaccc gctctgggag gtctgtgccg gccagcacat
     1561 gccggtgaat ttccatatcg gcgccagcga aaccgccatc gactggatgg gccagcaggg
     1621 ctggccatcc ctgccgcgcg atctgcgctc cggcatttcc ggcgccatgc tgttcttcaa
     1681 taacggcaag gtcgtctcca acctcatcta ttccggcgtg ctggaccgct tccccgcgct
     1741 gaaattcgtc tccgtggaaa gcggcgtggg ctggattccc ttcctgatgg aagcgctcga
     1801 ctatcagctg ctggaaatcg ccgaaggcaa gaattttgcc ctgaaaccct cggaatattt
     1861 caagcgcaat ttctacgcct gcttctggtt cgagcgccgc gacatctccg ccacgctgcg
     1921 caaggttggc atagataacg ttctgtttga aacggacttc ccccacccga ccggcctcta
     1981 cccgatcgag aacctcgaag agcgcctcgc cggcctcacc cgcgaggagc gcgccaaagc
     2041 ccttggcggc aatgccgcgc ggctctacaa catcaccatt taggtgcgcc cagcgaatag
     2101 aatgttatct tcccctccca aatcccccgc cgggcccgcg ccgttcaggc agcccggcag
     2161 cgtccgccgt accagcagca tcgatgccga ctggccggag ggccgcaacg gcgcgatgcg
     2221 gctcatcggc cgcgcgcggg acatcgccac cccgcccgat gccacggata tcgtcctgct
     2281 ggcgcagggc gcgttcgagg ccaggatcga tcccgatcgc cacgtcctgg cgctcaacgc
     2341 ctcccccagc ccagccgggc taccgcagct cgtcggcgag cgggcgggcg ggcatctgcg
     2401 ccgcgccata gaccgcgtcc tgccggaaga gcggcgcggc ggcacgccgc tgcatctcat
     2461 cttggacgac attgccggca ccagcctcat cgccccctgg gcctggtcgc gctgggaccc
     2521 ggactggctg gcccagatgc aggcgcgcaa ggccgacccg aaatatgccg ccgccttcaa
     2581 ccgcgaaaat atctgcaccg gcctgcgcac cggctccagc gggttgagcc tgatggccga
     2641 gggcgtggat gccggccagc tgcgccagcc cgaggacgaa accggctggc atgatttccc
     2701 cgccgcgccc ggccccggca tgcgccgtgc ccggcgcatc gatgtggcgc gggatcagct
     2761 gatccgcatc gacgcgcatt tccaggacag cgccaccatg ccggacggca cgcgcgccgc
     2821 tctgcatgaa taccgcatcc tcggcagcgc agatcccgtc tcgctggaaa tcttgtcgct
     2881 cgaggcgcag ccgcgcgtgc tgccttttgt tgagtgcccg gatgcggcgg cgaacatgca
     2941 caggctggtg ggcaagccct tgcccctgct gcgggagatc gtgctc
//
LOCUS       DASQCV010000051         3027 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_506789, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000051 DASQCV010000000
VERSION     DASQCV010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3027
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506789"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            83..2485
                     /locus_tag="VEQ16_00675"
     CDS             83..2485
                     /locus_tag="VEQ16_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019013154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HYP62364.1"
                     /translation="MALDLGRRQFISSSLKAQLRRRAGELAGICLAVVALTLALALVT
                     YNPADPSFDTASGTRPTNLAGLAGAKMADLLLQGFGVAGAVPVACLLAWAYRLATRGG
                     ITRVKTRIVLGGLSMPLLAAALALGVAEIPGAAVTWPVPPGIGGTAGYVLANAFAGSS
                     SGFGRTGAGILLALSLATSLGCFLYALGFTPGEWHAGGKRAARAAAASVQQGVRGAEA
                     VTSWISPLLQTVAAEEAAPRRLWAPMPEPEDDNGDERGYVAPPEPSVPMLSFKAKPAV
                     KAAPIPKPAARQERLPLLEIGWTPPSLDLLRPAPPRAGTQLSEEALQANARLLENVLQ
                     DYGVQGKIVEIRPGPVVTLYELEPAPGIRSARVIGLAEDIARSLAVIAVRIAVVAGRN
                     VIGIEVPNAKRETVYLSELLGSALWENLHGALPLALGKDISGAPILADLARMPHLLIA
                     GTTGSGKSVGVNAMIMSLLYRLSPEQCRLILIDPKILELSVYDGIPHLLTPVVTEPAK
                     AVAALKWVVREMDRRYRNMSQLSVRNIAGYNDRVNEARARGEVVTRRVQTGFDSETGK
                     PVFEEQPLALEPLPFIVVFIDEMADLMLVAGKDIEICVQRLAQKARAAGIHVIMATQR
                     PSVDVITGTIKANFPTRISFQVISKFDSRTILGEQGAEQLLGQGDLLYMQGGGRITRV
                     HGPFVSDQEVEAVVEYLREQGEPAYLDEVTEPMDDEDGPAMPVGAIGGNTNAEGALYD
                     QAVAIVARDRKASTSYLQRCLTIGYNRAAKLIEQMEKDGIVSPANHVGKREVLVRAER
                     DE"
     gene            2492..>3027
                     /locus_tag="VEQ16_00680"
     CDS             2492..>3027
                     /locus_tag="VEQ16_00680"
                     /inference="COORDINATES: protein motif:HMM:NF014816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HYP62365.1"
                     /translation="MAGLVLYGEPGWGSAIAEAQLVWYGLEFAFVRTGDLFAEPGARA
                     KLQDVNPLGQIPTLVLEDDSIMTESAAITLYLADLTGRDDLVPPPSHPARGAFLRWLV
                     FIVANIYPTYTYADDPSRFVSVEAARAPFKSAVHDYAKRLYAQLDEAAGSPWFLGNRL
                     SALDFYLVVLTHWEPGRD"
BASE COUNT          482 a          938 c         1028 g          579 t
ORIGIN      
        1 ggtggcgtaa atccgtcatc actccctcct tgccagggaa aaaactttga aaatcagccg
       61 ttccgcttgt atggttcgag tcatggcact cgatctgggc aggcggcaat tcatctcatc
      121 ctcactaaag gcgcaattgc gtcggcgggc cggggagctt gccggcattt gcctggccgt
      181 cgtcgcgctc acgcttgcgc ttgcgctggt tacctataac ccggcggacc cgtcttttga
      241 taccgcttcc ggtacgcgcc cgaccaatct ggccgggctg gcgggtgcga aaatggcgga
      301 tctgctgctg cagggctttg gcgtggccgg ggctgtgcca gtggcgtgcc tgctggcctg
      361 ggcgtaccgg ctcgccacgc gcggcggtat cacgcgggtg aagacccgca tcgtgctggg
      421 cgggctgtcc atgccgctgc tggcggcggc tttggcgctg ggggtggcgg aaattcccgg
      481 ggcggcggtg acctggccgg tgccgcccgg cattggcggc acggcgggct atgttctggc
      541 caatgcgttt gccgggagca gctccggctt cggccgcacg ggcgccggca tattgctggc
      601 gttgagcctc gccacctcgc tgggctgttt cctctatgcg ctcggcttta cccctggcga
      661 atggcatgcc ggcggcaagc gcgcggcgcg cgccgccgcg gcctcggtgc aacagggggt
      721 gcgcggggcg gaggcggtga catcctggat ctcgccgctg ctgcagactg tggcggcgga
      781 agaggcggca ccgcgccggc tctgggcgcc catgccagag ccggaggatg ataatggcga
      841 tgagcgcggc tatgtcgccc cgcccgagcc cagcgtgccg atgctgtcct tcaaggccaa
      901 gccggcggtg aaggccgcac ccatccccaa gcctgcggcg cggcaggagc gcctgcctct
      961 gctcgaaatc ggctggacgc cgccatcgct cgatctgctc cgcccggccc cgccgcgcgc
     1021 cggcacgcag ttgtcggagg aggcgctgca ggccaatgcg cgtttgctgg agaatgtgct
     1081 ccaggattac ggcgtgcagg gcaagattgt ggaaatccgc cccggccctg tggtgacttt
     1141 gtatgagctg gagccggcgc ctggtatccg ctccgcgcgc gtcatcggcc tcgcagagga
     1201 tattgcccgc tcgctcgccg tcatcgccgt gcgcattgcc gtggtggcgg ggcgcaatgt
     1261 catcggcatc gaggtgccga atgccaagcg cgagacggtg tatctctccg agctgctcgg
     1321 cagcgccttg tgggagaatt tgcatggcgc tttgccgctg gcgctgggca aggatatttc
     1381 cggcgcgccg attttggcgg atctcgcccg tatgccgcat ctgctcatcg ccggcaccac
     1441 cggctcgggt aaatccgtcg gcgtgaatgc gatgatcatg agcctgctct accggctctc
     1501 gccggagcag tgccggctca tcctgatcga tccgaaaatt cttgagctct ccgtttatga
     1561 cggcatccca catctgctca cccctgtagt gaccgagccg gcgaaagcgg tggcggcgct
     1621 gaaatgggtg gtgcgcgaga tggaccgccg ctatcgcaat atgagccagc tctcggtgcg
     1681 caacatcgcc ggctataatg accgcgtgaa tgaggcccgc gcccgcggcg aggtggtgac
     1741 gcgccgggtg cagaccgggt tcgattccga aaccggcaag ccggtgttcg aggaacagcc
     1801 tctggcgctg gaaccgctgc ccttcatcgt cgtgtttatc gacgaaatgg cagacctgat
     1861 gctcgtcgcg ggcaaggaca tcgaaatctg cgtgcaacgc ttggcgcaga aggcgcgcgc
     1921 ggcggggatt catgtaatca tggcgacgca gcgcccctcg gtggacgtca tcaccggcac
     1981 catcaaggcc aatttcccga cgcgtatctc cttccaggtc atctccaagt tcgatagccg
     2041 caccatcctg ggcgagcagg gggcggaaca gctgctaggg cagggcgatc tgctctacat
     2101 gcagggcggc gggcgcatca cccgcgtgca tgggccgttc gtctccgacc aggaggtgga
     2161 ggcggtggtg gaatatctgc gcgagcaggg cgagccggcc tatctcgatg aagtcaccga
     2221 accgatggat gacgaggacg ggccggcgat gcccgtgggc gccatcggcg gcaatacgaa
     2281 tgccgagggc gcgctgtatg accaggccgt cgccatcgtg gcgcgggacc gcaaggccag
     2341 cacctcctat ctacagcgct gcctcaccat cggctataac cgcgcggcga aactcatcga
     2401 gcagatggag aaagacggca tcgtcagccc ggccaaccat gtcggcaagc gcgaggttct
     2461 ggtgcgcgca gagcgggacg agtagacggc catggccggg ctcgtccttt acggcgaacc
     2521 aggctgggga tcggccatcg ccgaggcgca gcttgtctgg tatgggcttg aatttgcctt
     2581 tgtccgcacc ggcgacttgt ttgccgagcc aggggcccgg gctaagctgc aggacgtcaa
     2641 tccgctgggg caaattccga ctttggtgct tgaagacgac agcatcatga cggaaagcgc
     2701 ggctatcact ctgtatttgg ctgatttgac gggccgggac gatctcgtgc caccaccctc
     2761 tcaccccgcg cgcggggcat ttttgcgctg gctggttttc atcgttgcca atatctaccc
     2821 gacctacact tatgcggatg atccctcccg ttttgtgtcc gtggaggcag cgcgggcgcc
     2881 atttaaaagc gcggtgcatg attatgccaa gcggctttat gcgcagctcg atgaagccgc
     2941 cggcagcccg tggtttctcg gtaaccgctt gtcagcgctc gatttttacc ttgtggtgct
     3001 gacccattgg gagccggggc gggattg
//
LOCUS       DASQCV010000052         1567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3159811, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000052 DASQCV010000000
VERSION     DASQCV010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3159811"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            37..861
                     /locus_tag="VEQ16_00685"
     CDS             37..861
                     /locus_tag="VEQ16_00685"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HYP62366.1"
                     /translation="MQDIIFWATMAYAFGGCETASFMGEEIQDPRRNIPRALLVAGAI
                     ITLAYIIGTIFVLLAVPSREVNEIQGLIQALSLTAERLGLPILIPIGALLIAISNLGA
                     SGAYLTATARLPFVAGIDHYLPPAFGRLHPRWKTPHVALWTQSIAGMIFIFLGQAGTS
                     VKGAYDVLVSMSTITYFIPYLFVFASMIALQREPAGPDVIRVPGGRLIAVAVAAVGFA
                     TTAFTIFLSLLPPPGEPNKALAVFKILGLTAVLLGIGVIIYQKAKAGARQPEAKKP"
     gene            complement(903..>1567)
                     /locus_tag="VEQ16_00690"
     CDS             complement(903..>1567)
                     /locus_tag="VEQ16_00690"
                     /inference="COORDINATES: protein motif:HMM:NF013237.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HYP62367.1"
                     /translation="GRSRSIPTMMDNTFASPALQQPLKLGVTVAVHSATKYLCGHGDA
                     MGGLIVGPKAYISELLHEIYRDFGGVISPFNAWLILRGIRTLHVRMPAHCSNARQIAE
                     FLARHPKIERVNYPGLERHAGHEIARKQMRDFGAMLSFEVKGGYEGGKRVMDGVRIFA
                     RAASLGDTRSLIVHSASTSHRAVPRDQRLAMGITDGLVRLSVGIEAVEDLLADLDQAL
                     AS"
BASE COUNT          275 a          518 c          464 g          310 t
ORIGIN      
        1 acacacttta ctggtaattt gcttcccagc gcgcgtttgc aggacatcat cttctgggcc
       61 acgatggcct acgcgttcgg aggttgcgaa accgcttcct tcatgggcga ggagatccag
      121 gatccgcgcc gcaacattcc gcgggcgctg ctggtggctg gagccatcat caccctcgcc
      181 tacatcatcg gaaccatttt tgtcctgctc gccgtgccga gccgcgaagt gaacgagatt
      241 cagggattga tccaggcctt gagtctgacc gcggaacgcc tgggcctgcc catcctcatt
      301 cccatcggcg ccctgctgat cgcgatcagt aatctcgggg cttcaggtgc gtatctcacc
      361 gccaccgccc gcctgccttt cgtggccggc atcgatcact acctaccgcc ggcctttggc
      421 cgcctgcatc cgcgctggaa gacgccgcac gtggccctgt ggacgcagtc catcgcgggt
      481 atgattttca ttttcctcgg gcaggccggc accagcgtca aaggggcata cgatgtgctg
      541 gtctcgatga gcaccatcac ctacttcatc ccgtacctct tcgtctttgc ctctatgatc
      601 gccctgcaac gcgaaccggc cgggccggac gtgattcgag tgccgggcgg gcggctcatc
      661 gccgtcgcgg tcgcggctgt cgggtttgcg accacagcct tcaccatttt tctctcgctc
      721 ctgcctccgc cgggcgaacc caacaaagcc ctcgccgtgt tcaagattct gggactgacg
      781 gcagtcctgc tcggcattgg agtgatcatt taccagaagg cgaaggcggg agcgcgccag
      841 cccgaagcga aaaaaccttg atcggctccg attgatcgcg gcacaagctc acgcaccgca
      901 catcaggagg ccagcgcctg atccagatcg gcgagcaggt cttcgaccgc ttcgatccct
      961 accgacaggc gtaccagtcc gtccgtgatg cccatggcga ggcgttgatc gcggggcact
     1021 gcgcggtgac tggtggacgc cgaatgcaca atcagggagc gcgtatcacc caggctcgcc
     1081 gcgcgcgcga aaatcctgac gccgtccatc acccgcttgc cgccttcgta gccgcccttg
     1141 acctcgaagc tcagcatggc gccgaagtcc ctcatctgct tcctggcgat ttcgtggccg
     1201 gcgtggcgct caagcccggg ataattcact cgctcgatct tcggatggcg cgccaggaac
     1261 tcggcaatct gccgggcgtt cgagcagtgg gccggcatgc gcacgtgcag cgtccggatc
     1321 ccgcgtagaa taagccaggc gttgaacggg ctgatcactc cgccgaagtc gcggtaaatc
     1381 tcatggagca gctcggagat gtaagccttg gggcccacaa taaggccgcc catggcatca
     1441 ccgtgcccgc agagatactt ggtggccgaa tggaccgcta ccgtcacacc cagtttcaag
     1501 ggttgctgca gggcggggct ggcgaacgtg ttgtccatca tggtcggaat gctgcgcgac
     1561 ctgccga
//
LOCUS       DASQCV010000053         2336 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_506978, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000053 DASQCV010000000
VERSION     DASQCV010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2336
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506978"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..329
                     /locus_tag="VEQ16_00695"
     CDS             <1..329
                     /locus_tag="VEQ16_00695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase"
                     /protein_id="HYP62368.1"
                     /translation="LLGAHIIKVKPPTDVISLEAAKKSYEGFDASTMAKRVQHVVQSC
                     FNGKRIVVFSGGESKSLDGLYEEIRGLRDGGANGSIIGRNTFQRPREEALAMLQKIID
                     IYLNKA"
     gene            465..1115
                     /gene="thiE"
                     /locus_tag="VEQ16_00700"
     CDS             465..1115
                     /gene="thiE"
                     /locus_tag="VEQ16_00700"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012973588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HYP62369.1"
                     /translation="MGTDSMGRLMSRDCRLYLITPPVLPSDFERQLAAALDAGDVAAL
                     QLRLKDVPDDELLRTIDKLRPIAQSRGVAFLLNDRPDLAVKSGCDGAHVGQTDTPVKQ
                     ARTILGDLTLGVTCHNSRHLAMEAGEAGADYVAFGAFFATSTKEPPEMAEIDTLKTWA
                     ETMEIPCVAIGGITAENCAPLVQAGAEFLAVVSAVWNHAHGPAAGVQAMLKAIAAA"
     gene            1178..1636
                     /locus_tag="VEQ16_00705"
     CDS             1178..1636
                     /locus_tag="VEQ16_00705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004273082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYP62370.1"
                     /translation="MSDTMSDRIEKTIELAAPIARVWRALTDHEEFGTWFRVKLETPF
                     AAGATARGRITHPGYEHLAWHVHVTAMEAPRYFAFTWHPYAVDPKVDYTTEPPTLVEF
                     RLAEIPSGTRLTVTESGFSKIPLHRQAEAFRMNNEGWSIQVQNIKTHVDG"
     gene            1623..1940
                     /locus_tag="VEQ16_00710"
     CDS             1623..1940
                     /locus_tag="VEQ16_00710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007088870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYP62371.1"
                     /translation="MLTAERASIFAALGDATRLSLLTRLNDGQDHPINRLTATAPLSR
                     QAVTKHLHVLEQAGLVQSRRAGRETLYRLRPGTLSAARDYLIEISRQWDAALGRLRDF
                     VER"
     gene            complement(2008..2289)
                     /locus_tag="VEQ16_00715"
     CDS             complement(2008..2289)
                     /locus_tag="VEQ16_00715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62372.1"
                     /translation="MISFMGASESTLIQSLGVPDKQINVNGVSYFAYVRQRTQVLSTG
                     PFWGGPYWWPYGGFAGPVSSSVQVWSCETTFTIQNGKVVYVSFKGNDCN"
BASE COUNT          448 a          814 c          654 g          420 t
ORIGIN      
        1 cgctgctcgg cgcccatatc atcaaggtga agccgcccac ggatgtcatc tcgctcgagg
       61 ccgcgaagaa atcctacgaa ggcttcgacg cctcgaccat ggccaagcgc gtgcagcacg
      121 tcgtgcagtc ctgcttcaac ggcaagcgca tcgtcgtgtt ctcgggcggc gagtccaaga
      181 gcctggacgg gctctatgag gaaatccgcg gcctgcgcga cggcggcgcc aatggctcca
      241 tcatcggccg caacaccttc cagcgccccc gcgaggaagc gctggccatg ctgcagaaga
      301 ttatcgatat ctatctgaat aaggcctgaa ctggggcttc gccccagacc ccagcagggg
      361 gtttcacccc ctgccccccg cccggggccg tcgccccgaa ggggcgccgt tttttatttt
      421 aggcgcgcct tcagcgcgac ggcccggacc ccttaactgg gggcatgggt actgactcta
      481 tgggacgcct catgtcgcgc gattgccgtc tttaccttat tacacctccg gtcctgccct
      541 ccgattttga gcgccagctc gcggccgctt tggacgccgg cgacgtcgcc gccctgcaac
      601 tgcgcctgaa ggacgtgcca gacgacgagc ttcttcgcac catcgacaag ctccgcccca
      661 tcgcgcaaag ccgcggcgtc gccttcctcc tcaatgaccg cccggacctt gccgtgaaat
      721 ccggctgcga cggcgcccat gttggccaga ccgatacgcc ggtaaaacaa gcccggacaa
      781 tcctcggcga cctcaccctc ggcgtcacct gccataattc ccgccatctc gcgatggaag
      841 ctggtgaagc cggcgccgac tatgtcgcct tcggcgcctt cttcgccacc agcaccaagg
      901 aaccgccgga aatggcggag atcgacacgc tgaaaacctg ggccgagacg atggaaatcc
      961 cctgcgtcgc catcggcggc attacggcgg aaaattgcgc cccgctggtg caggcaggtg
     1021 ctgaatttct ggcggtcgtt agcgccgtgt ggaaccacgc gcacggcccc gcagccggcg
     1081 tgcaggccat gttgaaagcc atcgcggccg cctgatgagc aacttttaag ttgctcatct
     1141 ccgcgcggtg caggaatatg caacgcggag gttgcccatg tccgacacca tgtccgatcg
     1201 catcgaaaag accatcgagc ttgccgcccc catcgcccgc gtctggcgcg ccctcacgga
     1261 tcatgaggaa tttggcacct ggttccgggt aaaactcgaa acccccttcg ccgccggtgc
     1321 caccgccagg ggccgcatca cccatcccgg ctatgagcat ctggcctggc atgtccatgt
     1381 caccgccatg gaggcgccgc gctatttcgc cttcacctgg cacccttacg ccgttgatcc
     1441 gaaggtggac tacaccaccg agcccccgac tctggtggaa ttccgcctcg cggaaatccc
     1501 ctccggcaca cgcctcaccg tcacggaatc cggcttcagc aaaatcccgt tgcaccgcca
     1561 agccgaggct ttccggatga ataacgaagg ctggtcgatc caggtacaga atatcaaaac
     1621 ccatgttgac ggctgaacgc gcttccatct tcgcggccct gggtgacgcc acgcgcctta
     1681 gcctgctcac ccggctgaat gacgggcagg accatcccat caaccgcctc accgcaacgg
     1741 cgccgctctc gcgccaggcc gtgacgaaac atctgcatgt gctggaacag gccgggctgg
     1801 tgcaaagccg ccgggccggg cgcgaaacgc tctatcgcct gcgccccggc accctctccg
     1861 ccgcgcggga ctatctcatc gagatttccc ggcaatggga cgccgccctt ggcagactaa
     1921 gggacttcgt cgagcgctag agcaatatcc gtttagctgg aatcgccaga ttccagctaa
     1981 acggatattg ctcgctaaaa tctggcacta gttgcagtca ttccccttga acgacacgta
     2041 caccaccttg ccattctgta tggtgaatgt tgtctcacag ctccagacct gcaccgagct
     2101 gctcaccggc cccgcgaaac cgccatatgg ccaccagtac ggtcctcccc agaaggggcc
     2161 cgtcgataac acctgcgtcc gctgccgcac ataggcgaaa tagcttaccc cgttcacatt
     2221 gatctgcttg tcgggcacgc cgagcgactg gatgagcgtg ctttccgaag cgcccatgaa
     2281 agagatcatg cgcgtctgca ggctgggacc tgtttggcag gcggcgagca gcaagg
//
LOCUS       DASQCV010000054         2036 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1169721, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000054 DASQCV010000000
VERSION     DASQCV010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1169721"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..918)
                     /gene="ald"
                     /locus_tag="VEQ16_00720"
     CDS             complement(<1..918)
                     /gene="ald"
                     /locus_tag="VEQ16_00720"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011391433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000286 - alanine dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006522 - alanine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HYP62373.1"
                     /translation="MLIGLPREIKDNEFRVGLTPAAVRELKAHGHDVLVEKNAGAGID
                     APDEAYVKAGANIIDTATEIFARADMVVKVKEPQPQECKMLRQGQILFTYLHLAPDPE
                     QAKLIEASGAIAIAYETVTDNNGRLPLLAPMSEVAGRMAVQVGAVSLQKANGGRGVLL
                     AGVPGVPPGKVVVLGGGVVGTNAARIAHGLGADVTIFDKSIARLAYLDDLYGPHLKTC
                     YSSAEAVEEAVFNADMVIGAVLVPGAAAPKLVTRAMLPQMRAGAVLVDVAIDQGGCFE
                     SSRPTTHSDPTYIVDNVVHYCVANMPGAVA"
     gene            complement(1108..1734)
                     /gene="alkB"
                     /locus_tag="VEQ16_00725"
     CDS             complement(1108..1734)
                     /gene="alkB"
                     /locus_tag="VEQ16_00725"
                     /EC_number="1.14.11.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA oxidative demethylase AlkB"
                     /protein_id="HYP62374.1"
                     /translation="MSGDLFDGAKIPGLSLLPGFALPEETALIETAMAVASTSSFRIM
                     ATPGGAKMSAAITNCGAAGWVSDRRGYRYEPRDPLTGQPWPDMPELFRGLATRAAAQA
                     GFADFCPDVCLMNRYMPGGKMGLHQDRDERDFSAPIVSVSLGLPASFLWGGPKRTDKT
                     QRLALQSGDVVVWGGAQRLFFHGIATIGQGSHPALGAVRLNLTFRRAL"
     gene            complement(1731..>2036)
                     /locus_tag="VEQ16_00730"
     CDS             complement(1731..>2036)
                     /locus_tag="VEQ16_00730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HYP62375.1"
                     /translation="RLNREALGNMDLGIAAPWPGGEADFEVRAFAPEIATEDPVTGSL
                     NAGLARWLIGAGLAPARYVAAQGTCLGREGRVHVAQDGTDTWIGGDCVTCIEGTLTL"
BASE COUNT          350 a          646 c          690 g          350 t
ORIGIN      
        1 ggccacggcg ccgggcatgt tggcgacgca gtaatgcacc acgttatcga cgatgtaggt
       61 ggggtcggag tgcgtggtgg ggcggctgga ttcgaagcac ccgccctggt cgatggcgac
      121 gtcgaccagc acggcgccgg cgcgcatttg cggcagcatg gcgcgggtga cgagtttcgg
      181 cgcggcggcg ccggggacga gcacggcgcc gatcaccata tcggcattga acacggcttc
      241 ttccacggct tcggcggagg agtagcaggt cttcaggtgg ggcccgtaca gatcgtcgag
      301 ataggcgagg cgggcgatgg atttatcgaa gatggtcaca tcggcgccga ggccgtgggc
      361 gatgcgcgcg gcattggtgc caaccacgcc gccgccgagg acgacgactt tgcccggcgg
      421 cacgcccggc acgccggcga ggagcacgcc gcgcccgcca ttggctttct gcagggaaac
      481 agcgccgacc tgcaccgcca tgcggccggc cacttcgctc atgggggcga gcagcggcag
      541 gcggccatta ttgtcggtga cggtttcata ggcgatggcg atggcgcccg aggcttcgat
      601 gagcttggcc tgctccgggt ccggcgccag gtgcaggtag gtgaacagga tctggccctg
      661 gcgcagcatc ttgcattcct gcggctgcgg ctctttcacc ttcaccacca tgtcggcgcg
      721 cgcgaagatt tcggtggcgg tgtcgattat gttggcaccg gccttcacat aggcctcatc
      781 cggcgcgtcg atgccggcac ccgcattttt ttccaccagc acgtcatggc catgcgcctt
      841 caactcgcgc accgcggcag gcgtgagccc gacgcggaat tcattatcct taatctctcg
      901 aggcaagccg ataagcatgg tgttctcctg tttcctggga ccgcgcgcgg cggtgcggcc
      961 ggtgcggttt ttgaaccttg gctgggggag ctatagttta aaatattaaa cccagcaacc
     1021 aaatcgtcgc gcagagctgc tatctctcgc ggcaaacctg cgagctgtat taaaatctaa
     1081 caattatatt aaacagtgag cgcggtgtta caaagcgcgg cgaaaggtca ggttgagtcg
     1141 cacggcgccc agcgcgggat ggctgccttg tccgatggtg gcgatgccat ggaagaaaag
     1201 gcgctgcgcc ccgccccaca ccaccacgtc gccgctctgc agggccaggc gctgggtttt
     1261 gtccgtccgc ttcggcccgc cccacaaaaa tgaagctggc aggcccaagg aaacagagac
     1321 gatgggggcg gaaaaatccc gctcgtcgcg gtcctggtgc agccccattt tgccgccagg
     1381 catgtagcga ttcatcaggc agacatcagg gcaaaaatcc gcgaacccgg cctgtgccgc
     1441 cgcccgcgtg gcgaggccgc ggaacagttc cggcatgtcc ggccagggct ggccggtgag
     1501 cgggtcgcgc ggctcgtagc gatagccgcg ccggtcgctc acccagcccg ccgcgccgca
     1561 attggtgatg gcggccgaca ttttggcgcc gcccggcgtc gccatgatgc ggaaggatga
     1621 agtggaagcg accgccatgg cggtttcgat cagcgcggtc tcctcgggca gcgcaaagcc
     1681 gggcaggagc gaaagcccgg ggattttggc tccgtcgaaa agatcgccgc tcacagcgtc
     1741 agcgtgccct ctatgcaggt tacgcaatcg ccaccgatcc aggtatccgt gccatcctgc
     1801 gccacatgca cccggccttc gcgtccaagg caggtgccct gcgctgccac atagcgcgcg
     1861 ggtgccagcc cggcgccgat gagccagcgc gccagcccgg cattgaggct gccggtcacc
     1921 gggtcctcgg tggcgatttc cggggcgaag gcgcgcacct cgaaatcggc ctccccgcct
     1981 ggccaggggg cggcgatgcc gagatccatg tttcccagcg cctcgcggtt gaggcg
//
LOCUS       DASQCV010000055         5932 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_341011, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000055 DASQCV010000000
VERSION     DASQCV010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5932
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341011"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /locus_tag="VEQ16_00735"
     CDS             <1..413
                     /locus_tag="VEQ16_00735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62376.1"
                     /translation="VTLFIVLFAHNAWLWLVYITGVMILPPYFASTMFLAVYASNKGY
                     VATHGESKANALITGIIGSVYALWMLYAAGPEFLLMSTIVFAVGVPVFWWAQREHHPD
                     QPVFNKIERGAVVLLLAVAALALVLFMKGIVSVT"
     gene            586..2904
                     /locus_tag="VEQ16_00740"
     CDS             586..2904
                     /locus_tag="VEQ16_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019462826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Orn/Lys/Arg decarboxylase N-terminal
                     domain-containing protein"
                     /protein_id="HYP62377.1"
                     /translation="MRFETMFRFLIAVEAAQMSGTERRHLDGITEALTERGITLTQAA
                     DLADAAQAVQADAAIGCILMEWGASPAFGDVGGFIAFLRGRGLEMPVFLLARRHQIEE
                     IDPDSLRHVAGFVFAGEDTPDFLARNMADHLCRYAASLKTPFFGAMVDYAEQGNQLWT
                     CPGHNGGVFYRKSPIGHVFVEHLGEAIFRNDLDNSVVELGDLLVHEGPARQAEIEAAK
                     IFGAERTYFVLNGTSASNKIVLSAIVAPGDLVLFDRNNHKAAVHGALLFGGGIPIHLP
                     TTRNAQGLIGPLDWKALDEQAIRDAIRANPLVTDKSLAEKPRPFRALVVEQCTYDGTI
                     YSAEMILKKLGHLCDYILFDEAWAGFMKFHSLFKDRFAMGLEPRQEDPGIIATQSTHK
                     QLAGFSQASQIHVKDSHVAGRARVEPRRFNELYMLHYSTSPFYPLFASLDVGAQMMKG
                     RAGEVLWDDTIRMGIEIRKTLRRLGKQFAAEAGTPEEAWFFDPFVPDVFAGLPWEEMP
                     TDTLAADPHAWALAPGASWHGFPGLTPGFAMTDPNKLTLLTPGFNRVTGEYTNHGVPA
                     PVLAQFLRERRIVPEKNDFNSILFLLTPGLEASKAGTLLAGLTAFKQMHDANAPLSVA
                     LPAFFARHEAHYAGMGLRDLCASLHEFYRRHGASELQRELFQAAHLPAPAVPPRTAWE
                     EFLRNRVDYLPLEKLPGRIAATLALVYPPGIGLILPGERYGAVDSPLLAYLRMVEAGG
                     NEFPGFEAEIQGIYRETGADGTTRLFTYVLAG"
     gene            2970..4196
                     /locus_tag="VEQ16_00745"
     CDS             2970..4196
                     /locus_tag="VEQ16_00745"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007434796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016990 - arginine deiminase activity
                     [Evidence IEA];
                     GO_process: GO:0019546 - arginine deiminase pathway
                     [Evidence IEA];
                     GO_process: GO:0019547 - arginine catabolic process to
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HYP62378.1"
                     /translation="MTAFNPAPGVFSETGKLREVLVHRPDLSLSRLTPANCHELLFDD
                     VIWVKKARQEHDAFVDTMRERGVEVMEFGHALAETMADQTARGWLLDHRLPPLQDGAD
                     EELRAWLTEMPAAELATFLIGGIARAELPFAPRSLFGMTRAPHEFVLPPLPNQLFTRD
                     TSCWVGSGVFINPMHWPARQQEAANVAALYKFHPRFKNSLFNTWFDATTEAPGQLSLE
                     GGDVMPVGDGLVLIGMGERSTPQAVSLYARRLFAAGAATRIIAAQMPSDRSFMHLDTV
                     FTFCDRDLVTIYPDVVHRLKAYSLYPEGADGLRIIEEKDSFLDVAAGALGLNRLRIIE
                     TGGDSSEAEREQWDDGNNVFALEPGVVLAYDRNVYTNTRLRKAGVEVITIEGAELGRG
                     RGGSHCMTCPIRRDAL"
     gene            4207..5202
                     /gene="argF"
                     /locus_tag="VEQ16_00750"
     CDS             4207..5202
                     /gene="argF"
                     /locus_tag="VEQ16_00750"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008282902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HYP62379.1"
                     /translation="MTHLRGRSVLTVEDFSQAELLDLLRLGAELKAARRGGYEAQLLK
                     GKTIALIFEKDSTRTRSGFEVAAYHQGAHVTYMGPGGSHIGHKESVKDTARVLGRMYD
                     AIEFRGFAQADVEALAQYSGVPVYNGLTDTSHPTQVLADFMTMREFSDKPLKEISFTF
                     LGDGRNNMALSLAMGAAKLGMKMRIGAPRSLWPDDATTAKLQALAAQSGADIGFEADP
                     QKSVAGADFLYTDVWLSMGEDEHLWGERIKLLLPYQINKALMQATGNAAAKFMHCLPA
                     FHNTETSVGHDIETRFGIPAMEVTDEIFEGATSIVFDQAENRLHSIKAILVATLA"
     gene            5202..>5932
                     /locus_tag="VEQ16_00755"
     CDS             5202..>5932
                     /locus_tag="VEQ16_00755"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="reversible synthesis of carbamate and ATP from
                     carbamoyl phosphate and ADP; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HYP62380.1"
                     /translation="MRILAALGGNAMLRRGEPLTEAAQQANIAQAAAALAALAADGHS
                     LILTHGNGPQVGLLALQAEAGPAGAAQPLDSLDAESEGWIGYLLEQELANALPAGTEI
                     ATLLTRIEVDAGDPAFAAPSKPIGPVYDEATAKNLATQRGWRVAPDGKYWRRVVPSPA
                     PMRLLNEASIARLVAAGTLVICAGGGGIPVIRGGNGLWRGTEAVIDKDAAGALLAARL
                     QADLFLMLTDVDAVYLDYGTPSQQK"
BASE COUNT         1034 a         1908 c         1870 g         1120 t
ORIGIN      
        1 aggtcacctt gttcatcgtg ctgttcgcgc ataatgcctg gctgtggctg gtttatatta
       61 ccggcgtgat gatcctgccg ccttatttcg ccagcaccat gttcctggcc gtctatgcca
      121 gcaataaggg ctatgtggcg acgcatggcg agagcaaggc caatgcgctc atcaccggca
      181 ttatcggctc cgtctacgcg ctgtggatgc tctacgccgc cgggccggaa ttcctgctga
      241 tgtccaccat cgtcttcgcc gtgggcgtgc cggtgttctg gtgggcgcag cgcgagcatc
      301 acccggacca gcccgtgttc aacaagatcg agcgcggcgc ggttgtcctg ctactcgccg
      361 tggcggcgct ggcgctggtg ctgttcatga agggcatcgt ctcggttacc tgaggcgcaa
      421 aaatattcct gcgaagggcg ccggatttcc ggcgcccttt tttattgccc atttttacag
      481 tgccccattt ttacagtgcg atgaatcccg cgcggccttg acctcgctca aagcgctgca
      541 atgccaggcc cttatgctgc gcccagccag acagggagag agtatatgcg cttcgagaca
      601 atgttccgtt ttctgatcgc cgtcgaagcc gcgcagatga gcggcaccga gcgccggcat
      661 ctggatggaa tcaccgaggc gctgacagag cgcggcatca cgctgacgca ggccgccgat
      721 cttgccgatg cggcccaggc cgtgcaggcc gacgcggcaa tcggctgcat tctgatggaa
      781 tggggcgcct cgcccgcctt cggcgatgtt ggcggattca tcgccttcct gcgcgggcgc
      841 gggctggaaa tgcccgtctt cctgctggcg cggcggcatc aaatcgagga aatcgatccc
      901 gactcgttgc ggcatgtcgc cggcttcgtc ttcgccggcg aggacacgcc ggattttctc
      961 gcccgcaaca tggccgacca tctctgccgc tacgccgcca gcctgaaaac accgtttttc
     1021 ggcgccatgg tggattatgc cgaacagggc aaccagctct ggacctgccc cggccataat
     1081 ggtggcgtgt tctatcgcaa aagcccgatc ggccatgtgt ttgtcgagca tctcggcgag
     1141 gccatattcc gtaacgatct cgataattcc gtggtcgagc tgggcgattt gctggtgcat
     1201 gagggcccgg cgcgccaggc ggaaatcgag gccgcgaaaa ttttcggcgc cgagcgcacc
     1261 tatttcgtgc tcaacggcac ctccgcctcc aacaagatcg tgctgtccgc catcgttgcg
     1321 cccggcgatc tcgtgctgtt cgaccgcaat aaccacaagg ccgcggtgca tggcgcgctg
     1381 ctgttcggcg gcgggattcc catccatctg ccgacaacgc gcaatgcgca aggtctgatc
     1441 ggcccgctcg actggaaggc gctggacgag caggcgatcc gcgacgcgat ccgcgcgaat
     1501 cctttggtca cggataaatc cctggccgag aagccgcgcc ccttccgcgc cctggtggtg
     1561 gagcaatgca cgtatgatgg cacgatctac agcgcggaga tgatcctcaa gaagctcggg
     1621 catctgtgcg actatattct cttcgacgaa gcctgggccg gtttcatgaa attccattct
     1681 ctgttcaagg accggttcgc gatggggctg gagccgcggc aggaggatcc gggcatcatc
     1741 gccacgcaat ccacccacaa gcagctcgcc ggtttttccc aggcctcgca gattcacgtg
     1801 aaggattcgc atgtcgcggg ccgcgcgcgc gtcgagccac ggcgcttcaa cgagctgtac
     1861 atgctgcatt attccacctc gcccttctat ccgctgttcg cctcgctcga tgtcggcgcg
     1921 cagatgatga aggggcgtgc cggcgaggtg ctgtgggatg acacgattcg catgggtatt
     1981 gaaatccgca agacgctgcg ccggctcggc aagcaattcg ccgccgaggc agggacaccg
     2041 gaagaggcgt ggttcttcga cccattcgtg ccggatgttt tcgccggcct gccctgggag
     2101 gaaatgccaa ccgacacgct ggcggcggac ccgcacgcct gggccctggc acctggcgct
     2161 tcatggcacg gcttccccgg cctcacgccc ggttttgcga tgaccgaccc caacaagctc
     2221 accttgctca cgcccggttt caaccgtgtc acgggtgaat ataccaacca tggtgtgccc
     2281 gccccggtgc tggcgcaatt cctgcgcgag cggcgcatcg tgccggagaa gaatgatttc
     2341 aattccatcc tgttcctgct cacgccgggg ctggaggcga gcaaggccgg cacgctgctg
     2401 gcggggctca ccgccttcaa gcagatgcat gacgccaatg cgcccctgag cgttgcgctg
     2461 cccgctttct tcgcccgtca cgaggcgcat tatgccggca tggggctgcg cgacctgtgc
     2521 gcttcattgc atgagttcta ccgccgtcac ggcgccagcg agctgcagcg ggagctgttc
     2581 caggcggcgc atctgcccgc gcccgccgtg ccgccccgca ccgcctggga agagtttttg
     2641 cgaaaccgcg tcgattatct gccgctggaa aaactgcccg gccgcatcgc cgccacgctc
     2701 gcgttggtct acccgcccgg catcggcctc atcctgcccg gcgagcgtta cggtgctgtg
     2761 gattcaccgc tgcttgccta tctgcgcatg gttgaggctg gcggcaatga atttcccggc
     2821 ttcgaagccg aaattcaggg catttaccgc gaaacgggtg cggacggaac aacgcgcctg
     2881 tttacctacg tgctcgccgg ttgatcgacc gcaaggcggc caacgccgcg cctttctaac
     2941 atccgctcaa tcaacacagg aaatccgtga tgacggcatt caatcccgct ccaggtgtgt
     3001 tctccgaaac cggcaagctg cgcgaagtgc tcgtgcaccg gccggacctt tccttaagcc
     3061 gcctgacccc ggccaactgc catgaattgc tgttcgacga cgtgatctgg gtaaagaagg
     3121 cgcgccagga acatgacgcc ttcgtggaca cgatgcgcga gcgtggcgtg gaggtgatgg
     3181 agttcggcca tgcgctggcc gaaacgatgg ccgaccaaac cgcgcgcggc tggctgctgg
     3241 accaccgcct tcccccgctg caggacggcg cggacgagga attgcgcgct tggctgacag
     3301 aaatgccggc ggccgagctt gccacctttc tgattggcgg cattgcccgc gcggagttgc
     3361 ctttcgcgcc gcggagcctg ttcggcatga cgcgcgcgcc gcatgagttc gtgctgccgc
     3421 ctttgcccaa ccagcttttc acgcgcgaca ccagctgctg ggttggttcc ggcgtgttca
     3481 tcaacccgat gcattggccc gcccgccagc aggaggcggc gaatgtcgcc gccttgtaca
     3541 aattccatcc gcgcttcaag aatagcctgt tcaacacctg gtttgacgcc accacggaag
     3601 cgcccgggca actcagcctc gaaggcggtg acgtgatgcc ggtgggcgat gggctggtgc
     3661 tcatcggcat gggcgagcgt tccacgccgc aggcggtctc gctctatgcg cggcggctgt
     3721 tcgccgcagg agccgcgacg cgaatcatcg ccgcgcagat gccgagcgac cgctccttca
     3781 tgcatctcga tacggtcttc accttctgcg accgcgatct cgtcaccatc tatccggacg
     3841 tggtgcaccg gctgaaagcc tactcgcttt atccggaagg cgcggatggg ctgcgcatca
     3901 tcgaggaaaa agacagcttc ctcgatgtgg ccgctggcgc cctcgggctg aaccgcttac
     3961 gaatcatcga gaccggcggc gattccagcg aggccgagcg cgagcaatgg gacgatggca
     4021 ataatgtctt cgccctggag cccggcgtgg tgctggccta tgaccgcaac gtctatacca
     4081 acacgaggct gcgcaaggcc ggggtggaag tcatcaccat cgagggcgcc gagctcggcc
     4141 gcgggcgcgg cggctcgcat tgcatgacct gccctatccg ccgcgacgct ttgtaaggag
     4201 ataaacatga cccatttgcg tggacgctcg gtgctgactg tggaggattt ctcgcaggcg
     4261 gagctgctcg acctgctgcg gctcggcgcg gaactgaaag ccgcgaggcg cggcggctat
     4321 gaggcgcagc ttctgaaagg caagaccatc gcgttgatct tcgagaagga ttccacacgc
     4381 acgcgctccg gttttgaagt tgcggcttat caccagggcg cgcatgttac gtatatgggg
     4441 ccgggtggct cgcatatcgg ccataaggaa agcgtgaagg atacggcgcg cgtgctgggg
     4501 cgcatgtatg acgccatcga gttccgcggc ttcgcgcagg ccgatgtcga ggcgctggcg
     4561 caatattccg gcgtgccggt ctataacggg cttaccgaca cctcgcatcc cacgcaggta
     4621 ctcgccgatt ttatgacgat gcgggaattt tccgacaagc cgctgaagga gatcagcttc
     4681 accttcctgg gcgatgggcg caacaacatg gcgctctcgc tggccatggg cgccgccaag
     4741 ctcggcatga agatgcgcat cggcgcgccg cgatcgctct ggccggatga cgccaccacg
     4801 gcgaagctgc aggcgctggc ggcgcagagc ggcgccgata tcggcttcga ggccgatccg
     4861 caaaaatccg tggcgggcgc ggatttcctc tataccgatg tgtggctctc gatgggcgag
     4921 gatgagcatc tgtggggcga gcggatcaaa cttctgctcc cttatcagat caacaaggcg
     4981 ctgatgcagg ccaccgggaa cgccgcggcg aaattcatgc attgcctgcc ggcctttcat
     5041 aataccgaga ccagcgtcgg ccacgatatc gaaacgcgct tcggcatccc cgcgatggag
     5101 gtgacggacg agatattcga aggtgctacc tccatcgtgt tcgaccaggc cgagaaccgg
     5161 ctgcattcca tcaaggcgat cctggtcgcc acgctcgcct gatgcgtatc ctggcagccc
     5221 tgggcggcaa cgcgatgctc cggcgcggcg agcctctgac cgaggcagcg cagcaggcca
     5281 atatcgccca ggccgccgcc gcgctggcgg cattggcggc tgacgggcac agcctcatcc
     5341 tcacccatgg caatggcccg caagtggggt tgctggcttt gcaggcggaa gcggggccgg
     5401 ccggcgcggc ccagcctctc gacagcctgg atgcggaaag cgaaggctgg atcggctatc
     5461 ttctggaaca ggagctggcc aacgcgctgc ccgccggaac cgagatcgcc accttgctca
     5521 cgcgcatcga ggtagatgcg ggcgaccccg ccttcgccgc gccgagcaag cctatcggcc
     5581 cggtctatga tgaagccacg gccaaaaacc tggccacgca gcgcggctgg cgcgtggcgc
     5641 cggacggcaa atattggcgg cgcgtcgtgc cctcacctgc ccccatgcgc ctgctcaacg
     5701 aagccagcat agcccggctg gttgcggctg gcacgctggt catctgcgcc ggcggcggcg
     5761 gcattcccgt gatacgcggc ggcaacggtc tatggcgcgg caccgaggcg gtcatcgaca
     5821 aggatgcggc tggcgcgctg ctcgcggcgc ggctgcaggc ggatctcttc ctgatgctga
     5881 ccgatgtcga tgccgtctat ctcgattacg gcacgccatc ccaacagaag tt
//
LOCUS       DASQCV010000056         1736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1667768, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000056 DASQCV010000000
VERSION     DASQCV010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1667768"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..445
                     /locus_tag="VEQ16_00760"
     CDS             <1..445
                     /locus_tag="VEQ16_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HYP62381.1"
                     /translation="KTGRLDLLTFSRNILSLAQASKDSTPAETDATEAPLHALLHPGS
                     SLTRQEKAKWLVEAQRRLTAPLTAVSFTLIGLVATLGGVFRRHGGLVRPAGAVALVTF
                     LVALGLGVNNLAARDVSLLPLIWVETLIPGLIAAFLLLRQTGPRG"
     gene            442..1554
                     /gene="lptG"
                     /locus_tag="VEQ16_00765"
     CDS             442..1554
                     /gene="lptG"
                     /locus_tag="VEQ16_00765"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019090094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HYP62382.1"
                     /translation="MRLPITLSLYFGRQFAFAVVVMLFALAILVALFDFLELLRESTS
                     APAATFGIVVEIELLRLPWSFMQILPFAVLLGGIYAFWRLARSSELVVARAAGISAWQ
                     FLAGPVLLACFFGMFGTGAISPLSAMTYGRAETLDNIYLKPNGGPLSLNGGDLWVRQA
                     DNGLTQHGVAVLHAKNVRLHDKVLEADNVTILRLDPLNTLLARIEAQHAILDSGNWAL
                     SGVNVLRPDADPQPAEHLDFPTDLTVNRVQESFASPDSLSFWALPSFIALLKRSGFST
                     IQHELAFQALSALPLLCATMALVAAGFSMRPSRRGGAGTTLVSGVGCGFALFMVSEVA
                     NQFGTSGAIPVMLAAWAPSVAGLFLALALLLHLEDG"
BASE COUNT          239 a          636 c          514 g          347 t
ORIGIN      
        1 gaaaaccggc cggctcgacc tgctcacatt cagccgcaac atcctctcgc tcgcccaggc
       61 cagcaaggac agcacgccgg cggaaacgga cgccaccgag gcgccgctgc atgccttgct
      121 ccatcccggc tcctcgctca cgcggcagga gaaggccaaa tggctggttg aggcgcagcg
      181 ccgcctcacc gctccgctca ccgcggtcag cttcaccctc atcgggctgg tcgccacgct
      241 gggcggggtg ttccgccgtc atggcgggct cgtccgcccg gccggcgccg tggcgctggt
      301 caccttcctc gtcgcgctgg ggctcggggt gaataatctc gccgcccgcg atgtcagcct
      361 gctgccgctc atctgggtcg agacgctgat ccccggtctc atcgccgcct ttctgctcct
      421 acgccagacg gggccgcgcg gatgaggctg cccataaccc tgtccctcta tttcggccgc
      481 cagttcgcct ttgccgtggt ggtgatgctg ttcgcgctcg ccatcctggt cgccctgttc
      541 gacttcctgg agctcctgcg cgaatccacc agcgcgccgg cggcgacatt cggcatcgtg
      601 gtggaaatcg agctgctgcg cctgccctgg agcttcatgc agatactgcc ctttgccgtg
      661 ttgctgggcg gcatctatgc cttctggcgc ctggcccgct cctcggagct ggtggtggcg
      721 cgcgccgccg gcatctccgc ctggcaattc ctcgccggcc cggttctgct cgcctgcttt
      781 ttcggcatgt tcggcaccgg cgccatctcc cccctctcgg ccatgaccta tggccgcgcc
      841 gagacgctgg ataatatcta tctcaagccc aatggcggcc cgctctcgct caatggcggc
      901 gatctctggg tgcgccaggc cgataacggc ctcacccagc acggcgtggc ggtgctgcat
      961 gcgaaaaatg tgcggctgca cgacaaggtg ctggaggccg acaatgtcac catcctgcgc
     1021 ctggaccctc tgaacacgct gctggcgcgc atcgaagcac agcacgctat actggattcc
     1081 ggcaactggg cgctgagcgg ggtcaatgtg ctgcgtcccg atgccgaccc gcaacccgcc
     1141 gaacatctgg atttccccac cgacctcacg gtgaaccgcg tgcaggagag cttcgcctca
     1201 cccgattcgc tgtccttctg ggcgctgccc tccttcatcg cgctactgaa acgctccggc
     1261 ttctccacca tccagcacga actcgccttc caggccctgt ccgccctgcc cttgctatgt
     1321 gccaccatgg cgctggtcgc ggccgggttt tccatgcgcc cctcgcgccg tggcggcgcc
     1381 ggcaccacgc tggtgtccgg cgtgggttgc ggctttgcgc tgttcatggt ctcagaggtc
     1441 gccaatcagt tcggcacttc aggcgccatc ccggtcatgc tcgcggcctg ggcgccttcg
     1501 gtggcgggat tgtttttggc gcttgccttg ttactgcatc tggaagatgg ctgacgcatg
     1561 aatcgtccca agagactcct cagcctgctg gccgccacca cctgcctgat gccctcggcc
     1621 gccctgatga tgcctcccgc catggcccag gacctgatgg gcatcgccgg caacacatcc
     1681 ggttcctcca attccaaagc cccggtcagt ttcactgcgg acacggtgag ctacga
//
LOCUS       DASQCV010000057         3451 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2828672, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000057 DASQCV010000000
VERSION     DASQCV010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3451
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2828672"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..467)
                     /locus_tag="VEQ16_00770"
     CDS             complement(<1..467)
                     /locus_tag="VEQ16_00770"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP62383.1"
                     /translation="MNRQQRRAEQKRSGTAKLAPESLFAAALAHHKAGRLNEAGRRYR
                     QILETYPDYADALHMLGMVAHQQGDFASAIDLIGEAVRLTDAAPCHFNLARALEDAGR
                     LEEAAARYRKTIALWPGNADAHANLGNLLQGLGELGEAAASFRRAIALEPGFA"
     gene            complement(545..1327)
                     /locus_tag="VEQ16_00775"
     CDS             complement(545..1327)
                     /locus_tag="VEQ16_00775"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008177 - succinate dehydrogenase
                     (ubiquinone) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HYP62384.1"
                     /translation="MAEFTLPANSKVGEGKTYKAPTGATRVKEFKVYRWNPDDGKNPV
                     IDTYEVDLDKCGPMVLDAIIKIKNEIDASLTFRRSCREGICGSCAMNIDGTNTLACLK
                     PIDEVKGAVKITPLPHMPVVKDLVPDLNQPYAQLRSIEPWLQADTAPPPDAERLQSKE
                     ERAEIDGLWECILCFCCSTSCPSYWWNGDRYLGPAVLLQAYRWIADSRDEATGKRLDA
                     LEDPFKLYRCHTIMNCTQTCPKGLNPAKAIGKIKQLMLERQG"
     gene            complement(1344..3155)
                     /gene="sdhA"
                     /locus_tag="VEQ16_00780"
     CDS             complement(1344..3155)
                     /gene="sdhA"
                     /locus_tag="VEQ16_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003629438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HYP62385.1"
                     /translation="MNAISNLSNGAYNVIDHTYDVVVVGAGGSGLRTTLGMGAAGLKT
                     ACITKVFPTRSHTVAAQGGISAALGNMGEDDWRWHMYDTVKGSDWLGDQDAIEYMCRE
                     AVPAIRELEHFGMPFSRTEDGKIYQRPFGGHMKDYGKEPAMRACAAADRTGHAMLHTL
                     YQQSLKHEVEFFVEYFALDLIMDADGACRGVMAWCLEDGTIHRFRAQMVVLATGGYGR
                     AYLSCTSAHTCTGDGGGMVIRAGLPVQDMEFVQFHPTGIFPAGCLITEGARGEGGYLT
                     NSEGERFMERYAPTAKDLASRDVVSRSMTIEINEGRGVGQAKDHILLHLEHLGADILH
                     ERLPGISETARVFAGVDVTKEPIPVLPTVHYNMGGIPTNYHAEVLRPTAANPDAVVPG
                     LMAVGEAACVSVHGANRLGTNSLLDLVVFGRAAAHRAAEIIKTGATQAPLPAGAGDAS
                     LASFDATRHAKGSTSVAELRDNLQRTMQAHAAVFRNSKSLTEGVAKMETLWAGQADMK
                     VADRSLIWNSDLMEALEFQNLMGNAAATMVGAEARKESRGAQAHDDFPERDDHEWMKH
                     TVAHVHENGQVDLTYRPVKMQTLTNEVSVFPPKKRVY"
     gene            complement(3171..>3451)
                     /gene="sdhD"
                     /locus_tag="VEQ16_00785"
     CDS             complement(3171..>3451)
                     /gene="sdhD"
                     /locus_tag="VEQ16_00785"
                     /inference="COORDINATES: protein motif:HMM:TIGR02968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HYP62386.1"
                     /translation="LPLVLYFIVSVLILKGADQAAMAVYMAEPWNAVLFIALILALFY
                     HLNLGMQVVIEDYVRHDAPRITLLLVVKAVIALLALACIISVLKLAFS"
BASE COUNT          633 a         1075 c         1110 g          633 t
ORIGIN      
        1 tcggcaaaac ccggctccag cgcgatggcg cggcggaacg aggccgcggc ttcgcccaat
       61 tccccaagcc cctgcaacag attgccaaga ttggcatgag cgtccgcatt accgggccag
      121 agcgcgatgg ttttccggta acgcgccgcc gcctcttcca gccgtcccgc atcctcaagg
      181 gcacgggcaa gattgaaatg gcaaggtgcc gcatccgtca gccggacggc ctcgccgatc
      241 agatcgatgg cagacgcaaa atccccctgc tgatgcgcca ccatgcccaa catgtgcaga
      301 gcatccgcat aatcaggata ggtttccaga atctgtcgat aacgccgccc cgcttcattc
      361 aggcgtccgg ctttatgatg tgcgagcgcg gcggcaaata atgattccgg cgcaagcttc
      421 gcggttccgg atcgtttctg ctcggcacgg cgctgctggc ggttcatggc cccactctgt
      481 cacagccgcc caaaaccaaa aaggcccggc agttgccggg ccttttcagt tttagcgcaa
      541 aaaatcagcc ttggcgttcc agcatcagct gcttgatctt gccgatcgcc ttggccgggt
      601 tcaggccttt cgggcaggtc tgggtgcagt tcatgatggt gtggcagcga tagagcttga
      661 acggatcctc cagcgcatcc aggcgcttgc cggtggcctc gtcacgggaa tcggcgatcc
      721 agcgataagc ctgcagcagc acggcggggc cgagataacg gtcgccattc caccaatagc
      781 tcgggcagga ggtggagcag cagaagcaca ggatgcactc ccacagcccg tcgatctccg
      841 cgcgctcttc cttggactgc agacgctcgg catcgggcgg cggggccgtg tcggcctgca
      901 gccagggctc gatggagcgc agttgcgcgt aaggctggtt aaggtcgggc accagatcct
      961 tcaccaccgg catatgcggc agcggggtaa tcttcaccgc gcccttcacc tcgtcgatgg
     1021 gcttcaggca cgcgagcgtg ttggtgccgt cgatattcat ggcgcaggag ccgcaaatgc
     1081 cctcgcggca ggagcggcgg aaggtcagcg aggcgtcgat ctcgttcttg atcttgatga
     1141 tcgcgtcgag caccatcggc ccgcatttat cgagatcgac ctcgtaagtg tctatcaccg
     1201 gattcttccc gtcatccggg ttccagcgat acaccttgaa ctctttcacg cgcgtcgcac
     1261 cggtcggagc cttgtaggtc ttgccttcac caaccttcga attcgcaggc agcgtaaatt
     1321 cagccatttc tctgcttcct tccttagtac acgcgcttct tgggcgggaa gacggagact
     1381 tcgttggtca gagtctgcat cttcaccggg cggtaggtga ggtccacctg gccgttctca
     1441 tgcacatggg caaccgtgtg cttcatccat tcatggtcat cgcgctcggg gaaatcatca
     1501 tgcgcctggg cgccgcggct ttccttgcgg gcctcggcgc cgaccatggt ggcggcggcg
     1561 ttgcccatca ggttctggaa ttccagagct tccatcaggt cggaattcca gatcagcgag
     1621 cggtcggcaa ccttcatgtc cgcctggccg gcccagagcg tctccatctt cgcaacaccc
     1681 tcggtgaggg acttggagtt gcggaacacg gcggcatggg cctgcatggt gcgctgcaga
     1741 ttgtcgcgca gctcggcaac ggaagtgctg cccttggcgt ggcgcgtcgc atcgaagctt
     1801 gccagcgagg catcgcccgc gccggccggc agcggcgcct gggtggcgcc cgtcttgatg
     1861 atctcggcgg cgcggtgcgc ggcggcgcgg ccgaacacca cgaggtcgag cagcgagttg
     1921 gtgccgaggc ggttggcgcc atgcacggag acgcaggcgg cctcgcccac ggccatcagg
     1981 ccgggcacga cggcatccgg attcgccgcc gtcgggcgca gcacttcggc atgatagttc
     2041 gtcggaatgc cgcccatgtt gtaatgcacg gtcggcagca cggggatggg ctccttggtc
     2101 acatccacgc cggcgaacac gcgcgccgtc tcggaaatgc ccggcaggcg ctcatgcaga
     2161 atatcggcgc cgagatgctc gagatgcagc aggatgtggt ccttggcctg acccacgcca
     2221 cggccttcat tgatctcgat ggtcatcgag cgcgacacca cgtcacgcga ggcgaggtcc
     2281 ttcgccgtcg gcgcatagcg ttccatgaag cgctcgcctt cggaattggt gagatagccg
     2341 ccttcgccgc gggcgccctc ggtgatgagg cagccggcgg ggaagatgcc ggtcgggtgg
     2401 aactgcacga attccatgtc ctgcaccggc aggccggcgc ggatgaccat gccgccgccg
     2461 tcacccgtgc aagtatgggc ggaggtgcag ctgagataag cgcggccata gccgccggtg
     2521 gcgagcacga ccatctgcgc gcggaagcgg tggatggtgc cgtcttccag gcaccaggcc
     2581 atcacgccac ggcaggcgcc gtcggcatcc atgatgaggt cgagcgcgaa atattcgacg
     2641 aagaactcca cctcatgctt caggctctgc tgatagagcg tgtgcagcat ggcgtggccg
     2701 gtacggtcgg cggcggcgca ggcgcgcatc gccggctcct tgccgtaatc cttcatatgg
     2761 ccgccgaacg ggcgctgata gatcttgcca tcctcggtac gcgagaaggg catgccgaaa
     2821 tgttccagct cacggatggc cggcacggcc tcgcggcaca tatattcgat ggcatcctgg
     2881 tcgccgagcc agtccgaccc cttcacggtg tcgtacatat gccagcgcca atcatcctcg
     2941 cccatattgc cgagcgcggc ggagataccg ccctgcgccg ccacggtgtg ggagcgggtc
     3001 gggaagacct tggtgatgca ggcggtcttg aggccggcag cgcccatgcc gagcgtggtg
     3061 cgcaggcccg agccgccggc gccgacaacg accacatcat aggtatggtc gatgacatta
     3121 taggcgccgt tggagagatt tgagatcgcg ttcatgtgcg cagtcttccg ttacgagaag
     3181 gcgagtttaa ggacggagat gatgcaggcc agcgccagca gggcgatgac ggccttcacc
     3241 acgagcagga gcgtaatgcg cggcgcatcg tggcgcacat aatcctcgat gaccacctgc
     3301 atgccgagat tgagatggta gaacaaagcc aggatgaggg cgatgaacag caccgcattc
     3361 cagggctcag ccatatagac ggccatggca gcctggtcgg cgcctttgag gatgagcacc
     3421 gagacgatga aatagagcac cagcggcagc a
//
LOCUS       DASQCV010000058         3958 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1833984, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000058 DASQCV010000000
VERSION     DASQCV010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3958
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1833984"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..612)
                     /locus_tag="VEQ16_00790"
     CDS             complement(<1..612)
                     /locus_tag="VEQ16_00790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014189470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HYP62387.1"
                     /translation="MEHRLLGAAGPRVSALGLGCMGMSGMYGPSDRAESIATIHAALD
                     AGMSLIDTGDFYGMGHNEMLIGEALQGVARDKYQVSVKFGAQRDPVGAFIGFDGRPAA
                     VKTALAYSLQRLGLDHIDIYRPARLDPNVPIEDTIGAISDMVKAGYVRHIGLSEVGST
                     TIRRAATVHPIVDLQIEYSLISRGIEESILPTLRELGIAVTAYG"
     gene            717..1607
                     /locus_tag="VEQ16_00795"
     CDS             717..1607
                     /locus_tag="VEQ16_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYP62388.1"
                     /translation="MTQPDFADLDAFAAVAQTRNFRRAAKLRGVSASALSEAVRRLEA
                     RLGVRLLNRTTRSVTPTEAGQKLLERLTPAFAEVAAALDAVNDFRESPRGTLRLDVPT
                     IVAREILPPIATSFLAAHPGIVLDVTANDSYVDVMAAGFDAGIRYEERLEKDMIAIPL
                     GPRRQRYMAAAAPSYLARHGRPHHPHELLNHACIRHRFASGVIAAWEFERDGEVIRII
                     PDGPLVGSVIELELAAAVAGLGVIATFEEFLLPHLTRGALVPVLGDWCPEFSGPYLYY
                     PSRRHMPAPLRAFVDFLKAS"
     gene            1735..2187
                     /locus_tag="VEQ16_00800"
     CDS             1735..2187
                     /locus_tag="VEQ16_00800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HYP62389.1"
                     /translation="MTETLQHPETSHAVALAVELRVLIGLLRRRLRELTDAGEMSWTQ
                     ISVLGRIENAEKATVTGLARAEGIRPQSMGAVIAALEAVGYVQGTPDPEDGRQTILSL
                     TKRGQGWVETNRAARLDWLSRAIETRLSAAQQERLGEALELLRLLAEP"
     gene            2216..3937
                     /locus_tag="VEQ16_00805"
     CDS             2216..3937
                     /locus_tag="VEQ16_00805"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP62390.1"
                     /translation="MKTADATARRESPRYKWLVLSNTTIAVLLATIDSSIMLIAMPEI
                     FRGINLNPLQPANTFYLLWMLLGYLMVSSVLVVSFGRLGDIFGRVKMYNLGFAIYTFF
                     SLVLALDPFSARAGALWLVIGRIFQGVGAAFLTGNSSAILTDAFPPNQRGLALGINTV
                     TAISGSFIGLVLGGVLAAIDWRLIFLVSVPFGVFGTIWSYMKLHGVRQQEPVPIDWLG
                     NGTFALGFISLMLGITFGIEPADGHAMGWSSATVLSLLGTGVVFLVAFIIIESRVPHP
                     MFRLALFKIRAFTFGTLSTFLSAMSRGGLMFLLVIWLQGIWLPLHGYSFEETPFWAGI
                     LMLPLSIGALVAGPLSGYLSDRFDARYFTAGGMLITAVSFLLLAVLPADFQYADFAVL
                     LFLNGFSMGAFSSPNRAAIMNALPSRDRGAGGGMNATFQNSAQVFSIGIFFSLILSGF
                     AATLPDTLTQGLVQYGVSPELAAQVAHLPPASILFASFLGFNPIKNLVPASALQSLPA
                     QNQAILGGHEFFPNLIAPSFHAGLTEAFTFAACLCLVAAASSWTRGRRYVHEDEVLAV
                     PAFAAEE"
BASE COUNT          644 a         1199 c         1254 g          861 t
ORIGIN      
        1 gccataggcg gtaacggcga tgccgagctc gcgcaaggta ggcaggatgc tttcctcgat
       61 gccgcgcgag atgagcgaat attcgatctg caggtcgacg atgggatgca cggtggcggc
      121 gcggcggatg gtggtggagc cgacctcgga cagcccgata tgccgcacat agccagcctt
      181 caccatgtcg gaaatcgcgc cgattgtgtc ctcgatgggc acgttgggat caagccgcgc
      241 cgggcggtag atatcgatat gatcgagccc gaggcgctgc aatgaatagg ccagagcggt
      301 cttcaccgcg gcgggacggc catcgaagcc aatgaaggcg cccaccgggt cgcgctgggc
      361 gccgaatttc acgctgacct ggtatttgtc gcgggctacg ccctgcaacg cctcgccgat
      421 aagcatctca ttatggccca tgccgtagaa atcgccggtg tcgatgagag acatgccggc
      481 atcgagggcg gcatggatgg tggcgatgct ctcggcccgg tcggatggcc catacatgcc
      541 ggacatgccc atgcaaccca ggccgagggc ggaaacgcgc ggcccggccg cgcccagaag
      601 acgatgttcc atggtctgat gttcccttca cgctgtgata tggctgcttc tatggcgcga
      661 tttggactgt atgataatta cgcttactct aaacgggctg tacggaaatc cgcacaatga
      721 cccagcctga ttttgccgat ctcgacgcct tcgccgccgt ggcgcagacg cgtaatttcc
      781 gccgtgccgc caagctgcgc ggcgtgtccg cctccgcgct cagcgaggcc gtgcgccgcc
      841 tcgaggcccg gctcggcgta aggctgctca accgcaccac ccgcagcgta acaccaaccg
      901 aggcgggaca gaagctgctg gagcgtctca ccccggcttt tgccgaagtc gccgcggcgc
      961 tggatgcggt gaatgatttc cgtgaatcgc cgcgcggcac gctgcggctc gatgtgccga
     1021 cgatcgtcgc ccgtgaaatc ctgccgccga tcgccacaag ctttctcgca gcacaccccg
     1081 gcattgtgct cgatgtaacg gcgaatgaca gctacgtgga tgtgatggcc gccgggtttg
     1141 atgccgggat tcgttacgag gagcggctgg agaaggacat gatcgcgatt ccgctcgggc
     1201 cgcgccggca gcgttatatg gctgccgccg cgccttccta tctcgcccgg catggcaggc
     1261 cgcatcatcc gcacgagctg ttgaaccatg cctgcatccg gcaccgtttc gcgagcggcg
     1321 tgatcgcggc ctgggagttc gagcgggatg gcgaggtgat ccgcatcata ccggacgggc
     1381 cgctggtcgg ctcggttatt gagctggaac tggccgccgc tgtggccggg ctcggcgtga
     1441 ttgcgacctt tgaggaattt ctgctcccgc atctcacccg tggcgcgctg gtgccggtgc
     1501 tgggcgattg gtgtccggag ttctccgggc cgtatctcta ttatcccagc cggcgccata
     1561 tgccggcacc gctgcgcgcg ttcgtggatt tcctgaaagc aagttgaaag cgggttgcgg
     1621 ccagttttgg gcgcaggcgg cgtatattca tttgaaaata tgcctatttt tttgtgaagc
     1681 tagactacga agattacctt tgtagtttcc tttctatatg ctagacatgc atccatgacg
     1741 gaaacattgc agcacccgga aacgagccac gccgtggctt tggccgtgga gctgcgcgtc
     1801 ctgatcggct tgctgcggcg gcgcctgcgg gagctgacgg atgcgggcga gatgagctgg
     1861 acgcagattt cggtccttgg ccgcatcgaa aatgctgaga aggcgacggt gaccggcctg
     1921 gcgcgggcgg aagggatacg cccgcaatcc atgggcgccg tcatcgccgc gctggaggcg
     1981 gttggatatg tccagggcac acccgaccct gaggatgggc gccaaaccat tctctctctt
     2041 accaaacgcg gccagggttg ggttgagacc aacagggcgg cgcggctcga ttggctgtcg
     2101 cgcgccatcg agaccaggct gagcgccgcg cagcaggaaa ggctgggcga ggcgctggaa
     2161 ttgctgaggc tgctggctga gccctgaaat tgaaatgatg aaggacgata ccggcatgaa
     2221 gaccgcggat gcaaccgcac ggagggaatc gccgcgctat aaatggctgg tgctgtccaa
     2281 cacgaccatc gcggtgctgc tggcgaccat cgattcatcg ataatgctga tcgccatgcc
     2341 ggagattttc cgtggcatca atctcaatcc gctgcagccg gccaatacgt tctatctgct
     2401 gtggatgctg ctcggctatc tcatggtgag cagtgtgctc gtggtcagct ttggacgtct
     2461 gggcgatatt ttcgggcgcg tcaaaatgta taatcttggc tttgccattt atacattctt
     2521 ctcgctcgtg ctggcgctgg acccgttcag cgcgcgggcc ggggctctct ggctcgtcat
     2581 cgggcgtatc ttccagggtg ttggcgcggc atttctcaca ggcaattcca gcgccattct
     2641 caccgatgcg tttccgccca accagcgcgg gctggcgctc ggcatcaata cggtcacggc
     2701 catcagcggc tccttcatcg ggctggtgct gggcggggtg ctggcggcca tcgattggcg
     2761 gctgatcttt cttgtctccg tgccgtttgg cgtgttcggc accatctggt cctatatgaa
     2821 gctgcatggc gtgcggcagc aggaaccggt gccgatcgac tggctgggga atggaacctt
     2881 cgcgcttggc ttcatctccc tgatgctcgg catcaccttc ggcatcgagc ccgccgatgg
     2941 ccatgccatg ggctggagca gtgccacggt attgtcgctg ctgggcaccg gcgtggtctt
     3001 cctggttgcc ttcatcatca tcgaatcccg cgtgccacat ccgatgttcc ggctggcttt
     3061 gttcaagatc cgcgctttta cgttcggcac gctctccacc ttcctctccg ccatgagccg
     3121 cggcgggctg atgttcctgc tggtcatctg gctgcaggga atctggctgc cgctacatgg
     3181 ctacagcttt gaagaaacac cgttctgggc tggcattctc atgctgccgc tctccatcgg
     3241 cgcgctggtg gcggggccgc tgtccggcta tctgtccgac cggttcgatg cgcgctattt
     3301 taccgcgggc ggcatgctca tcaccgcggt gagcttcctg ctcctcgctg tcctgcctgc
     3361 tgacttccaa tatgccgatt tcgcggtgct gctgttcctc aacggttttt ccatgggcgc
     3421 cttcagttcg ccgaaccggg ccgcgatcat gaacgccctg ccctcgcgcg accgtggcgc
     3481 cgggggcggc atgaatgcga cctttcagaa ttccgcgcag gttttttcca tcggcatctt
     3541 tttctcgctg atcctgagcg gtttcgcggc cacgctgccg gacacgctga cgcaggggct
     3601 ggtgcaatat ggggtctcgc ctgagctcgc cgcgcaggtg gcacatttgc cgcctgcctc
     3661 gatcctgttt gcctcttttc tgggcttcaa ccccatcaaa aacctggtgc ccgcgagcgc
     3721 cttgcaatcc ttgccggcgc agaatcaggc catcctgggc gggcatgaat tcttcccgaa
     3781 tctcatcgcc ccctcttttc acgccgggct gacagaagct tttacgtttg ccgcctgttt
     3841 gtgcctggtc gccgcggctt cgtcctggac gcgcgggcgg cgttatgtgc atgaggacga
     3901 agtgctggcg gtgccggctt ttgccgccga ggagtaagcg gcagaatttc gttacgat
//
LOCUS       DASQCV010000059         1721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2165955, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000059 DASQCV010000000
VERSION     DASQCV010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2165955"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..1623)
                     /locus_tag="VEQ16_00810"
     CDS             complement(112..1623)
                     /locus_tag="VEQ16_00810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HYP62391.1"
                     /translation="MPNSATAGGFLLVLAIVLPVCGVLLSLVLGGRHAERIALILMPA
                     GLAIALAIAGAVWSTHNVLQYSVGNWSPPLGVAFRADGLSTAMMVTTAVLICGIGLFA
                     RGQFPSPQQSELRAPLVFWTLMPAVWGALNAVFIGGDLFNLYVALELLTFAAVPLVSL
                     DGRAETLAAALRYLLFALFGSILYLLGAVLLYGAYGTLDIVLLSGHIQAEPIAWAAIS
                     LMTTGLLAKAALYPFHLWLPPAHAGAPAPASAILSGLVVKAPFFLVIRLWFDIMPRMP
                     QPAAAQVLGILGAAAILVGSVVALRQVRLKLLIAYSTVAQIGYLFLMFPLAIKPEMGH
                     PWNTTAWTGGVLQAISHAFAKAAMFMSAGLIAEALGHDRIAELSGIGRALPITVFAFA
                     LGGVSLMGLPPSGGFVAKAMLLTAAVAEGQWWWAVVVLVGGLLAGGYVFLVLARALAD
                     ASQPLTLLSPVSPSRQAVVVVLALCAVLLGFVPLRPLELLQIGRPDIAVGGMK"
BASE COUNT          405 a          563 c          529 g          224 t
ORIGIN      
        1 cgcgacacac aggccaacag catggcgagg ggcacggcca gggcagcgaa aagcagtgcc
       61 cctgcgacag tcataaccga cagtccgcag atattggcgt cgggcaggac ttcacttcat
      121 cccccctacc gctatgtcag ggcggccgat ctgcagcagt tccaaagggc gcagcggaac
      181 aaagcccagc agcaccgcgc atagcgccaa caccacaacc accgcttgcc ggcttggaga
      241 gacgggtgag agcagagtca acggctggct cgcatcggcc aatgctcggg ccagcaccag
      301 aaatacgtaa ccaccggcga gcagcccgcc caccaagacg accacggccc accaccattg
      361 gccttcggca accgccgcag tcagcaacat ggctttcgcc acaaacccgc cgctcggcgg
      421 caggcccatc agagacacgc cgccgagcgc gaaggcgaac acggttatcg gaagtgcgcg
      481 gccgataccg gatagctccg caatccggtc gtgtccgagc gcttccgcga tcaaccccgc
      541 cgacatgaac atggcggctt tggcaaaagc gtgcgagatg gcctgaagaa cgccaccggt
      601 ccaagcggtc gtgttccagg gatggcccat ttcgggtttg atggcgagcg ggaacatcaa
      661 aaacagatag ccgatctgcg cgaccgtcga gtaggcgatc agtagtttca gtcgcacttg
      721 ccgaagcgcc acaacactgc caaccaggat cgcagcggca ccaaggatgc cgagaacctg
      781 cgccgccgcc ggctgcggca ttctgggcat gatgtcgaac caaagccgga tgacgagaaa
      841 gaatggcgcc ttgacaacca gccccgacag tatggcgctc gccggggcgg gagccccggc
      901 atgggccggc ggcagccata agtggaacgg gtaaagtgcc gccttggcca acagtcctgt
      961 cgtcatcagc gaaatcgcgg cccacgcgat cggctccgcc tggatgtggc cggacaacag
     1021 aacgatatcg agggtcccgt aagcgccata tagcagaacc gcgccgagca aatagagaat
     1081 tgaaccgaac aacgcgaaaa gcaggtaccg caacgcggca gcgagcgtct ccgcgcggcc
     1141 gtctagggag accaacggca ccgcggcaaa ggttagcagc tcgagggcga cataaaggtt
     1201 gaataggtcg ccgccgataa agacggcatt gagcgctccc caaacggccg gcatcaatgt
     1261 ccagaatact agcggcgcac gcagttctga ttgctgcggg ctggggaact gccctcgcgc
     1321 gaacagcccg atgccgcaga tcagcaccgc tgtggttacc atcattgctg tcgaaagccc
     1381 gtccgcgcgg aacgccacac caagcggcgg gctccagttg ccgacagagt actgcagcac
     1441 attgtgggtg ctccagacgg cgccggcgat cgccaatgcg atggcgagcc cggccggcat
     1501 cagaatgagg gcaatgcgct ccgcgtgacg tccgccgagc accagcgata gaagcacacc
     1561 acaaacgggc aggacgatcg ccagaacgag caggaacccg cccgccgttg cggaattcgg
     1621 catcagggct ggctatccat ccgaccctag ggtcgcccgc ccagtctccc gaaacagccg
     1681 gagcagcagc gctatcgcta gcgctgtcgc cgcaaaggcg a
//
LOCUS       DASQCV010000060         1673 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2166207, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000060 DASQCV010000000
VERSION     DASQCV010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2166207"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1614)
                     /locus_tag="VEQ16_00815"
     CDS             complement(<1..1614)
                     /locus_tag="VEQ16_00815"
                     /inference="COORDINATES: protein motif:HMM:NF021456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2169 domain-containing protein"
                     /protein_id="HYP62392.1"
                     /translation="MLNPNGGCRHSAMKIIKPLTISLLTRPFEFRRELWLGLSTFAFV
                     PVGEMEILLPETAMWPFLAEELPPEQPLDAAIPKARAEFLAIAHAFAPGGVPAPLVSV
                     AVQLGNLVKRLSVFGDRQISRSQASEPAPFTTLPIDWAHAFGGTGFAANPFGKGAVPI
                     HGTDGRVHPAPNVVDPKLAGEAHRTPSSFAPVDQMWPTRAQFGGTWDEAWLKQDFPGL
                     PRDIDWRFFNCAPPDQWLPDGLTGDETYAFKNLHPTQPLLEGRLPGMAPRLFLVRKGQ
                     EEDGFEEIPLTLTTVWCFPHRERLVLVHHGRARLAEEDASDIVRVVVGADRLGALRPA
                     DEFRAVMAKRLDRTNGAIHALRDAELVPAEWLRPDPALAVTESEAQRQIRARFRRRAE
                     QELAAKREEMKARGLDPDKFVPQALPPERPPPTLDELPAFMAEMEAEAETQKKKAEAE
                     VAANKAQMVERLAAAGIPKEEIQKRLNAKPKGPPAFSAAGFRAEQRKRAVAMRLAGID
                     TSGLEARLASPEFNAQLEQAEAAVRNAYRL"
BASE COUNT          289 a          568 c          512 g          304 t
ORIGIN      
        1 aaggcggtaa gcattgcgca ctgccgcctc cgcctgctcc agctgggcgt tgaattcggg
       61 agaggcgagc cgcgcttcca atcccgatgt gtcgatcccg gccaggcgca ttgccaccgc
      121 ccgtttcctc tgttccgccc gaaatcctgc ggcgctgaat gccggaggcc ccttcggctt
      181 cgcattgagc cgcttttgga tctcctcctt cgggattccc gcggcggcga gccgctccac
      241 catctgggcc ttgttcgccg cgacttccgc ctctgccttt ttcttttgcg tctccgcctc
      301 cgcctccatc tcggccataa aggccggcag ctcatccaat gtgggcgggg gccgctcggg
      361 cggcaaagcc tgcgggacga acttgtcggg atcgagcccg cgcgctttca tttcctcgcg
      421 cttcgctgcg agctcctgct ccgcgcggcg gcggaagcgc gcgcgaattt gccgctgcgc
      481 ttcggattca gtcacggcta acgcggggtc cgggcgcaac cattcggcag gtacgagctc
      541 ggcatcacgc aacgcgtgga tcgcaccatt cgtccgatcg aggcgctttg ccatcaccgc
      601 acgaaactcg tcggccggcc gaagcgcgcc gaggcggtcc gccccgacca ccacgcgaac
      661 gatgtcggag gcatcttcct cggcgagccg cgctcggccg tgatgcacca gcaccagccg
      721 ctcacgatgc ggaaagcacc agaccgtggt caacgtcagg gggatttcct caaacccgtc
      781 ttcctcctgc cccttgcgga ccaggaatag tcgcggcgcc ataccaggca gtcgtccctc
      841 tagcagaggc tgagtgggat gcagattctt gaatgcgtag gtttcatcgc cggttaggcc
      901 gtccggcagc cattgatccg gcggcgcgca gttgaagaag cgccaatcga tgtcacgcgg
      961 gagaccggga aaatcctgtt tcagccacgc ctcgtcccag gtgccgccga actgcgcgcg
     1021 cgtcggccac atctgatcta ccggcgcgaa actgctgggg gtgcgatgcg cctctccggc
     1081 cagtttcgga tcgacgacat tgggtgccgg gtggacccgc ccgtccgtgc catggatcgg
     1141 caccgccccc ttgccaaagg gattggcggc aaagcccgtg ccaccgaagg catgcgccca
     1201 gtcgatcggc agggtcgtga acggggccgg ctcgctcgcc tgggaacggc tgatctgccg
     1261 atcgccgaag acgctaagcc tcttaaccaa attgccaagc tggacggcca cgctgaccag
     1321 cggcgccggc acgcctcccg gtgcgaatgc atgggcgatc gccaggaact ccgcccgggc
     1381 cttcgggatc gccgcgtcca gcggctgttc cggtggcagt tcctcggcca gaaagggcca
     1441 catcgcggtt tccggcaaca agatctccat ctcgccgacc ggcacgaatg cgaaagtgga
     1501 aaggccaagc cagagttcgc ggcggaactc gaacggccgg gtcagcaggc tgatagtcaa
     1561 aggctttata attttcatgg ctgagtgccg gcagccgccg ttcggattca gcaacgaatc
     1621 gcttagtgat accctcaacc accaagaatc aacttcaatg tagcctgatc taa
//
LOCUS       DASQCV010000061         2996 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2498083, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000061 DASQCV010000000
VERSION     DASQCV010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2996
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2498083"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..724)
                     /locus_tag="VEQ16_00820"
     CDS             complement(<1..724)
                     /locus_tag="VEQ16_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease N-terminal domain-containing
                     protein"
                     /protein_id="HYP62393.1"
                     /translation="MDFEKFTERARGFVQAAQTIAMREYNQQITPEHLLKAFLDDEEG
                     AASGLIRMAGGDQAAAKRAADEAVRKIPKVQGSGAGQPGITPDLVRVLDAAQQAATKA
                     GDAFVAQDRMLVALAASSTPAGKALQAAGVSAQTLERAVNEVRKGRKVDSATAEQQFD
                     ALKKYARDVTELAKDQKLDPVIGRDEEIRRTIQVLARRTKNNPVLIGEPGVGKTAIVE
                     GLALRIVNGDVPESLRNKRVLSL"
     gene            862..1632
                     /locus_tag="VEQ16_00825"
     CDS             862..1632
                     /locus_tag="VEQ16_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC N-terminal beta barrel domain-containing
                     protein"
                     /protein_id="HYP62394.1"
                     /translation="MKIESLYRYPVKGLTAEPLTAARLSPGRCIPFDRAFALAQGDAN
                     LDIEHPAWISKVNFLCLAKNPATARLRATFDEGMGLLHIHDPMGTDITASPFTEEGRD
                     ALTIYLTTALGDEARYGENGKAPRFHHFPIHSFCDHKTQVISLIGLGSLAALEQAVGV
                     ARAKLRFRANLYIENIEPWAEFSLLGKVLQAGDTTMLVQERIDRCPATMVNPDTAEKD
                     ANPVKELREHFGHIDMGVFAEVLRPGTIRPGDMIKIID"
     gene            1660..2145
                     /locus_tag="VEQ16_00830"
     CDS             1660..2145
                     /locus_tag="VEQ16_00830"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HYP62395.1"
                     /translation="MDQTINRYPFPAANHSQGPQSGDSQLQSGGALPFLLAAGVPAGQ
                     ELVFFSGHTPPVTNPAAAPDSIAAFGDTYTQTIGALRELGDSLARLGLGFGHLVQLRA
                     LLVGDPALGGRMDSAGFSRAYAEFFGTAQNPHLVARTRLQVVGLVNPGWLVELEAVAS
                     R"
     gene            complement(2099..>2996)
                     /locus_tag="VEQ16_00835"
     CDS             complement(2099..>2996)
                     /locus_tag="VEQ16_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP62396.1"
                     /translation="IESFAPRLQGAALAGEVWGWRVAFLVSNAGVIALSIKTGWHVAV
                     ALMALLALLGPLAALLAPEPVVEREAAAGGFKARFLQAVREPLTEFLSRRGAAVAIGF
                     ILLFRLGGALGATMLAPFYTSLGFNRAAIAVASGPISLVCGLAGTGLGAVLVARIGVG
                     RALLFTALLQVAALCLYPVLGLYPHLPHILLIISAVESFTDAFSDTAFLSYMSGLCHP
                     EHTATQYALLSSLAPLALHTVAGGSGFLAARIGFVPFFITAAAAALPGIVLLLVILRF
                     YPPGAWRVNARLQPPAPPASPD"
BASE COUNT          576 a         1057 c          865 g          498 t
ORIGIN      
        1 caagcgaaag cacgcgcttg ttgcggagcg attccggcac atcgccattc acaatgcgca
       61 gcgccagccc ttcgacgatc gccgtcttgc ccacgcccgg ctcgccgata agaaccggat
      121 tattcttggt tcggcgcgcc agcacctgaa tggtgcggcg gatttcctca tcgcgcccga
      181 tcaccggatc caatttctgg tccttggcca gctccgtcac gtcccgcgca tatttcttca
      241 gcgcgtcaaa ttgctgctcc gccgtggcgc tatccacctt gcgccccttg cgcacctcat
      301 tcacggcgcg ctccagcgtc tgcgcggaaa caccggccgc ctgcagcgcc ttgcccgccg
      361 gcgtgctgct ggccgccagt gccaccagca tcctgtcctg tgccacgaag gcatcgcccg
      421 ccttggtcgc ggcttgctgc gcggcatcga gcacccgcac caagtccggc gtgatgcccg
      481 gctgcccggc gcccgaaccc tgcactttcg gtattttccg taccgcctca tccgccgccc
      541 gcttggcggc agcttggtcg ccccccgcca tgcggatcag cccgctggcc gccccttcct
      601 catcatccag aaacgccttc agcaaatgct ccggcgtgat ctgctggtta tattcgcgca
      661 tcgcgattgt ctgcgccgcc tgcacgaaac cacgcgcgcg ctcggtgaat ttctcaaaat
      721 ccatatgtca gctccttatc tcgtccccga ataggcaacg tttggacctt gtccctgaat
      781 aggcaacaaa gaccttgcca gcccaatatg ggcaaggcca tgatttgcct caagtgctta
      841 tcgcaaggtg aagaccaact catgaagatc gagtccctct accgctaccc cgtcaaaggc
      901 ctgaccgcgg aacccctcac cgccgccagg ctctcccccg gacgctgcat ccccttcgac
      961 cgcgccttcg ccctggccca gggcgacgcc aatctcgata tcgagcaccc ggcctggatt
     1021 tcaaaggtca atttcctctg cctggccaag aaccccgcca ccgcgcgcct gcgtgcgacg
     1081 tttgatgaag gaatgggact gctccatatc cacgacccca tgggcacgga catcacggcc
     1141 tcgcccttca ccgaggaggg ccgtgacgcc ctcaccatct atctcaccac cgcgctcggc
     1201 gatgaggccc gctatggtga aaacggcaag gcgccgcgct tccatcattt ccccatccat
     1261 agtttctgcg accataaaac tcaggtgatc agcctcatcg gcctgggctc gctcgcggca
     1321 cttgagcaag ccgtcggcgt cgcgcgcgca aaactgcgtt tccgcgccaa tctctacatc
     1381 gaaaatatcg agccctgggc ggaattctcg ctcctcggga aagttttgca ggcaggcgac
     1441 acgaccatgc tggtgcagga gcgcatagac cgctgcccgg cgacaatggt gaacccggac
     1501 actgccgaga aagacgccaa cccggtgaag gaactgcgag agcatttcgg acatatcgac
     1561 atgggcgtgt tcgccgaggt tttacgcccc ggcacgatcc ggccaggaga tatgataaaa
     1621 attatcgatt aattttagct aaactaacaa gggaaattta tggatcaaac gatcaaccgc
     1681 tacccgttcc cggccgccaa ccattcccag gggccgcaat cgggggattc gcagctgcaa
     1741 tcgggcggcg cgctaccctt cctgctcgcc gccggggtgc cggccgggca ggagctggtg
     1801 tttttctccg gccatacccc gccggtgacc aaccccgccg ccgcgccgga cagcatcgcc
     1861 gcctttggcg atacctacac gcaaacaatc ggcgctctgc gggagcttgg tgactctctg
     1921 gcacggctgg ggctggggtt tgggcatctg gtgcaattgc gcgccttgct ggtgggcgac
     1981 ccggctttgg gcgggcgcat ggacagcgct ggcttctcac gcgcctatgc ggaatttttc
     2041 ggcacggcgc agaatccgca tctggtggcg cgcacgcggc tacaggtggt ggggctggtc
     2101 aatccgggct ggctggtgga gctggaggct gtagcctcgc gttaacgcgc caggcgccgg
     2161 gcgggtagaa gcgcaaaatc accaacagga gcacgatacc cggcagcgcg gcggcggcgg
     2221 cggtgatgaa gaaaggtaca aacccgatcc gcgccgccag aaacccgctc ccccccgcca
     2281 ccgtatgcag cgccagcggc gccagcgagg acagcagcgc atattgcgtg gctgtatgct
     2341 cgggatggca cagaccggac atataagaga ggaaggccgt gtcggaaaaa gcgtcggtga
     2401 aggattccac cgccgagatg atgagcaata tatgcggcag atgcgggtac agccccaata
     2461 ccggatacag gcacaaggcc gccacctgca gcagcgccgt gaacagcagc gcccgcccca
     2521 cgccaatgcg cgccaccagc accgccccaa ggccggtccc cgccagcccg cagacaagcg
     2581 aaataggccc gctcgccacc gcaatcgcgg cgcggttgaa gccgagcgag gtgtagaaag
     2641 gggcgagcat cgtcgccccc agcgccccgc ccagacggaa cagcaggatg aagccgatgg
     2701 ccaccgccgc gccccggcgc gacagaaatt ccgtcagcgg ctcgcgcact gcctgcagga
     2761 aacgcgcctt gaacccgccc gccgccgcct cccgctccac caccggctct ggcgccagaa
     2821 gcgcggcgag cggcccgagc aaggcgagca gcgccatcag cgccaccgcc acatgccagc
     2881 ctgttttaat ggacagcgcg atgaccccgg cattggagac caggaacgcc acgcgccagc
     2941 cccatacctc gccggccagc gccgcgccct gcagccttgg ggcaaaactc tcgatg
//
LOCUS       DASQCV010000062         1585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2498119, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000062 DASQCV010000000
VERSION     DASQCV010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2498119"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            251..1120
                     /locus_tag="VEQ16_00840"
     CDS             251..1120
                     /locus_tag="VEQ16_00840"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HYP62397.1"
                     /translation="MADTAALSIAETIRQSLARLTPTERRPALALLANYPVPGLEPVA
                     QFARRSGVSGPTILRLVAKLGFPSYPDFQKALRDELELRLQTPLAKAARPDRRSPAPA
                     RDFIDSYGRAMIANVERSLAEVPRPVFEAAVELLADRRRRVLLMGGRFTGSVALQFYL
                     HLRELRPRVQLVSGQTATWVEHLLDIGRQDLLVVYDIRRYQEDVVRFARQAAGLGASV
                     ILFTDQWLSPIAAIARHVFALRTSMPSSWESFAALSALTEAMVVRIHERRWGEAKQRM
                     ERLETMRGRLNPQ"
     gene            1152..>1585
                     /locus_tag="VEQ16_00845"
     CDS             1152..>1585
                     /locus_tag="VEQ16_00845"
                     /inference="COORDINATES: protein motif:HMM:NF028262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62398.1"
                     /translation="MNREPLVMVCTCEMAGRVRGKGFPLKDLPERLIKGVGWVPTNSM
                     INCFGIIGDTPFGATGDLILVPDSETAVRVRFDDDSALEHFYLGDIRETDGTPWVCCP
                     RDFLRRGLAALEAAAGYRLYAAFEQEFVYTGVEELPGASYSL"
BASE COUNT          232 a          543 c          529 g          281 t
ORIGIN      
        1 ggcttccctc agatgcgctc gctcggccat gccgtccatc cctgactgct cgcggcgcca
       61 taggctggag ccggaagaac gggtgtgacc cgcccgtccg gattccatct ccgacggcgt
      121 ccgatggctg cctccgcgtg aggccgcgat cctgcagcgg ccgatttggt tgtatccaga
      181 atttcacaat gccaaatctc agtcaaatct gtaatctttg ttcggggtat tcccgccgtc
      241 agagcaggtc atggccgaca ccgcggcgct ctccatcgcc gagaccatcc gccagagctt
      301 ggcgcggctg acgccgaccg agcgccggcc ggcgctcgct ttgctggcca actatccggt
      361 cccgggactg gagccggtgg cgcagttcgc gcgccgttct ggcgtcagcg gcccgaccat
      421 cctgcgcctc gtcgccaagc tcggctttcc cagctatccc gatttccaga aggcgctgcg
      481 cgatgagctg gagctgcgcc tgcagacgcc gcttgccaag gcggcgcggc cggacaggag
      541 atcgccggcc ccggcgcgcg acttcatcga cagctatggc cgcgccatga tcgccaatgt
      601 ggagcgctcg ctcgccgagg tgccgcgccc ggtcttcgag gcggcggtgg agctgctcgc
      661 cgaccgccgc cgccgtgtgc tgctgatggg cgggcgcttc accggcagcg tggcgctgca
      721 gttctatctc catctgcgcg agctccgccc gcgggtgcag ctggtgagcg gccagaccgc
      781 gacctgggtc gagcatctgc tcgatatcgg ccgccaggat ctcctggtgg tctatgacat
      841 ccggcgctat caggaggatg tcgtgcgctt cgcccgccag gcggcgggcc tcggcgcctc
      901 ggtgatactg ttcacggatc aatggctctc ccccatcgcc gccatcgccc gccatgtctt
      961 cgcgctgcgc accagcatgc cgtcgagctg ggaatccttc gccgccctct cggccttgac
     1021 cgaggccatg gtggtgcgca tccatgagcg ccgctggggc gaggcgaagc agcgcatgga
     1081 gcggctcgag accatgcgcg gccggctgaa tccccaatga atctcaggaa cgagggaccc
     1141 agagcccaat gatgaatcgc gaaccgctgg tcatggtctg cacctgcgag atggcgggac
     1201 gggttcgggg caagggcttc ccgctgaagg acctgccgga acggctgatc aagggcgtgg
     1261 gctgggtccc gaccaacagc atgatcaact gcttcgggat catcggcgac acgcccttcg
     1321 gggccaccgg cgatctgatc ctggtgcccg attcggagac cgcggtccgc gtgcgctttg
     1381 acgacgacag cgcgctggag catttctacc tcggcgacat cagggagacc gatggcacgc
     1441 cctgggtctg ttgcccgcgc gattttctgc gccgggggct ggcggcgctg gaggcggccg
     1501 ccggctatcg cctctacgcc gccttcgagc aggagttcgt ctataccggg gtggaggagc
     1561 tgcccggcgc ctcctacagc ctgga
//
LOCUS       DASQCV010000063         2198 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2995878, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000063 DASQCV010000000
VERSION     DASQCV010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2198)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2198)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2198
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2995878"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..296)
                     /locus_tag="VEQ16_00850"
     CDS             complement(<1..296)
                     /locus_tag="VEQ16_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HYP62399.1"
                     /translation="MPKHSYYITTPIYYVNGAPHLGHAYTSTAADVLARWHRLEGHDV
                     FFLTGTDEHGQKVEAAARLAGIPPQQFTDQVSDDFRDMARVMNISNDDFIRTTEP"
     gene            complement(309..1298)
                     /locus_tag="VEQ16_00855"
     CDS             complement(309..1298)
                     /locus_tag="VEQ16_00855"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HYP62400.1"
                     /translation="MPPEPRANPLFVGHEAAIASLHHAASSGRLHHGWLFTGPPGIGK
                     TTLAFRFARWLLAGGQSPDLSTPESAPLFRRVAAGTHPDLFTAERRINEKTEKLQSEI
                     VIATIREANAFMRLTPAEGGWRVIIVDGAEDMNTNTANALLKMLEEPPPRAILLLTSA
                     TPGRLLPTIRSRCRVLPMAALTDETMHRLLTAYAPELAQAERARLVELAEGSIGAALS
                     LAAEDGIALAGLVDEALDAPVAPARAQAIADIVARTVEGVDKFETFFALLRARLAART
                     RLAARESKRAGGDSRLAGSVALWQEFGRMEREVLGLNLDKRAAIIVALTQLHK"
     gene            complement(1298..1924)
                     /gene="tmk"
                     /locus_tag="VEQ16_00860"
     CDS             complement(1298..1924)
                     /gene="tmk"
                     /locus_tag="VEQ16_00860"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HYP62401.1"
                     /translation="MIAARRGLFITLEGGEGAGKSTAAAGLKRLLDEEGQEALLTREP
                     GGTAGAEAIRELLLSNVPLTSLAQTMLHFAARAEHVERLIRPALEEGRVVICDRFYDS
                     TMAYQAFGQGVAVEAVASLIRLINLRPDISFLLDLPDDVARARVTSRAGGSDRYEAMG
                     EQFFARVRSGFKSIAASEPGRFVLIDATKPPAQLVEDMRAAIRTRAGR"
     gene            complement(1921..>2198)
                     /locus_tag="VEQ16_00865"
     CDS             complement(1921..>2198)
                     /locus_tag="VEQ16_00865"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HYP62402.1"
                     /translation="NANVTLPGTITASQPAPGPLYIQIPGFGTTGGAYQAMARVPGVN
                     ARVVPQPGEDRPYWAVNIGPYHSVADADAALQQVLNDGITDPEIIVR"
BASE COUNT          346 a          686 c          799 g          367 t
ORIGIN      
        1 ggctcggtgg tgcggatgaa atcatcgttg gagatgttca tcacccgcgc catgtcgcgg
       61 aaatcgtccg agacctggtc ggtgaattgc tgcggcggga tgccggccag gcgggccgcg
      121 gcctcgacct tctggccatg ctcgtccgtg ccggtgagga agaacacatc atgcccttcc
      181 agcctgtgcc agcgggccag cacgtcggcg gccgtggagg tataggcatg gccgagatgc
      241 ggcgcgccgt tcacgtaata gatgggcgtc gtgatgtagt agctgtgctt cggcatgacc
      301 tgtgcagttt atttgtgcag ttgtgtgagc gcgacgatga tggccgcgcg tttatcgaga
      361 ttgaggccca aaacctcacg ctccatgcgg ccgaactcct gccagagcgc gaccgagccg
      421 gcaagccggg aatcgccccc tgcccttttg ctttctcggg cggccagcct tgtgcgggcg
      481 gcaagccggg cgcgcagcag ggcgaaaaaa gtctcgaact tgtccacccc ttccacggtg
      541 cgggcgacga tgtcggcgat ggcctgggcg cgggcgggcg ccacgggggc gtccagtgct
      601 tcatctacca gcccggccaa ggcaatgccg tcctcggcgg cgagagaaag ggcggcgccg
      661 atgctgccct cggccagctc caccagccgg gcgcgctcgg cctgggcgag ctccggcgcg
      721 taggcggtga gcagcctgtg catggtctca tccgtcaggg cggccatggg cagcacgcgg
      781 cagcggctgc ggatggtggg cagcaagcgc ccgggggtgg cgctggtgag gagcagaatg
      841 gctcgcggcg gtggctcctc gagcattttc agcagcgcgt tggcggtatt cgtgttcatg
      901 tcctcggcgc catcgacgat gatgacgcgc cagccgcctt cggccggcgt caggcgcata
      961 aaggcgttgg cctcgcggat ggtggcgatg acgatttcgc tctgcagctt ttccgtcttc
     1021 tcgttgatac ggcgctcggc ggtgaagagg tccggatgcg tgccggcggc gacgcggcgg
     1081 aagagcggcg cgctttccgg ggtggaaaga tcggggctct ggccgcccgc cagcagccag
     1141 cgggcgaagc ggaaggcgag cgtggtctta ccgatgccag gcgggccggt gaagagccag
     1201 ccatgatgca gccgcccaga gctggcggca tggtggagcg aggcgatggc cgcctcatgg
     1261 ccaacgaaaa gcgggttggc gcgtggttct ggcggcatta ccgccccgcc ctggtccgga
     1321 tggcggcgcg catatcctcg accagctggg ctgggggctt cgtggcgtcg atgagcacga
     1381 aacgtccggg ctcggacgcg gcgatgcttt tgaaaccgct cctcacgcgt gcgaaaaact
     1441 gctcgcccat ggcctcgtag cggtcggacc cgccggcgcg gctggtcacc ctggcacggg
     1501 ccacatcgtc cgggaggtcg agcaggaagg agatgtccgg gcgcagattg atgagacgga
     1561 tgagcgaggc cacggcctca accgccacgc cctggccgaa ggcctggtag gccatggtgg
     1621 aatcatagaa gcggtcgcag atcaccaccc tgccttcctc aagcgccggg cggatgagcc
     1681 gctccacatg ctcggcgcgg gcggcgaaat gcagcatggt ctgggccaga gaggtgagcg
     1741 gcacgttgct gagaagcagc tcgcggatcg cctcggcgcc cgccgtgccg cccggctcac
     1801 gtgtcagcag ggcctcttgc ccctcttcgt ccagcaggcg tttcagcccg gcggcggcgg
     1861 tggatttgcc agccccctcg ccgccttcca gcgtgatgaa cagaccacgc cgcgcggcaa
     1921 tcatctaacg ataatctccg ggtccgtgat gccgtcattg agcacctgct gcagggcggc
     1981 atcggcatcg gcgacggaat ggtacgggcc gatattcacc gcccaatagg ggcggtcttc
     2041 gcccggctgc ggcaccaccc gggcattgac gcccggcacc ctggccatgg cctggtaggc
     2101 gccgccggtc gtgccgaagc cggggatctg gatataaagc gggccaggcg caggctggct
     2161 ggcggtgatg gtgcccggca gggtgacatt tgcattgc
//
LOCUS       DASQCV010000064         1583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1337612, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000064 DASQCV010000000
VERSION     DASQCV010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1337612"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..371)
                     /locus_tag="VEQ16_00870"
     CDS             complement(<1..371)
                     /locus_tag="VEQ16_00870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYP62403.1"
                     /translation="MGSGHLIDPELVEGLSLLPTLDFSGVDIVQVRALLAMGWGTVPE
                     VEVPGVESSWLTVPGPAGAPDVRVAVHRPVAAAGPLPAILHIHGGGYVIGEPGIADIA
                     NRMLVAELGCAIYSVDYRLAP"
     gene            523..>1583
                     /gene="dnaN"
                     /locus_tag="VEQ16_00875"
     CDS             523..>1583
                     /gene="dnaN"
                     /locus_tag="VEQ16_00875"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019085734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HYP62404.1"
                     /translation="MKFKADRATLMKSLAHVQNVVEKRNTIPILANVLLAVRDGQLTL
                     AATDLEISLVEEVAAETARNGAITVPAATLYEIVRRQPDNAVIELDHPGGDAQLALRA
                     GRYSTSLVALSVDEFPKLDAGKLTHHFVLSAAELRGLIDRTRFAISTEETRYYLNGIF
                     IHAAEGESGPVLRAVATDGHRLARVEEPLPEGAAGMPGIIVPRKTVTELRKLLDEVSG
                     EVEIALSETRIQFAIGTMKLTSKLIDGTFPDYERVIPRSNDKVLRVDKRDFNDAVGRV
                     SAISAEKHRPVKLSLAEDLLVISAASAEQGSASEELGGDLVDYQFGPLEIGFQARYLS
                     DVTDQVKGKVEFVFADGAAP"
BASE COUNT          287 a          598 c          443 g          255 t
ORIGIN      
        1 tccggcgcca gccggtaatc caccgaataa atggcacagc ccagctctgc caccagcatc
       61 cggttggcga tgtccgcaat ccccggctcg ccgatcacat aaccgccgcc atgaatatgc
      121 agaatcgcgg gcagggggcc cgctgccgcc accggccggt gcaccgccac ccgcacatcc
      181 ggcgcgcccg ccggccccgg cacggtgagc caggaactct ccaccccagg cacttccact
      241 tccggcaccg tcccccagcc catcgccagc agggcccgta cctgcacgat atccacgccg
      301 gaaaaatcca gcgtgggcag gagcgacaac ccctccacca gctccgggtc tatcagatgc
      361 ccactgccca tggccttcct ctttttttgc ttctctgccg ccaccctggc acgccgctta
      421 gccccggcca agcgcgcacc ttccctagcg ccggtcccct tgctacgcta agccacgaat
      481 cggtctaaaa ccaaaaattc gtgctttgtc tggaagggta ccatgaaatt caaggccgat
      541 cgcgccaccc tgatgaaatc tctggcccat gtgcagaacg tggtggagaa gcgcaacacc
      601 atccccatcc tggccaacgt cctgctcgcc gtgcgcgacg gccagctcac tttggccgcg
      661 accgacctgg aaatctcgct ggtcgaggaa gtcgccgccg agaccgcgcg caatggcgcc
      721 atcacggtcc ccgccgccac cctgtatgaa atcgtccgcc gccagccgga caatgcggtc
      781 atcgagctcg accatccggg cggtgacgcc cagctcgctc tgcgcgccgg ccgctattcc
      841 accagcctgg tggcgctttc cgtggatgaa ttccccaagc tcgatgccgg caagctgacg
      901 caccatttcg tgctctccgc cgccgagctg cgcggcctca tcgaccgcac gcgcttcgcc
      961 atctccaccg aggagacgcg ctattacctc aacggcattt tcatccacgc cgccgagggt
     1021 gaatccggcc ccgtgctgcg cgccgtggcg accgacggcc accgcctcgc ccgcgtcgag
     1081 gagccgctcc ccgagggtgc ggcgggcatg cccggcatca tcgtcccgcg caagacggtg
     1141 acggagctgc gcaagctgct ggacgaggtt tccggcgagg tggaaatcgc cctctccgag
     1201 acgcgcatcc agttcgccat cggcacgatg aagctgacca gcaaactcat cgacggcacc
     1261 ttccccgatt atgagcgtgt gatcccccgc agcaacgaca aggtgctgcg cgtcgacaag
     1321 cgggatttca acgacgccgt cggccgcgtc tccgccatct cggccgagaa gcaccgcccc
     1381 gtaaaactct ctttggcgga agacctgctc gtcatctccg ccgccagcgc ggagcagggc
     1441 agcgcctccg aagagctagg cggtgatctg gtggactatc agttcggccc cctggaaatc
     1501 ggcttccagg cccgctacct ctcggatgtc acggaccagg tgaagggcaa agtcgaattc
     1561 gtcttcgccg acggcgccgc gcc
//
LOCUS       DASQCV010000065         3782 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2332690, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000065 DASQCV010000000
VERSION     DASQCV010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3782
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2332690"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1555
                     /gene="murJ"
                     /locus_tag="VEQ16_00880"
     CDS             <1..1555
                     /gene="murJ"
                     /locus_tag="VEQ16_00880"
                     /inference="COORDINATES: protein motif:HMM:TIGR01695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HYP62405.1"
                     /translation="SFVMIRGAFTVGLWTMASRILGFVRDILIAAILGTGPIADATFV
                     ALRLPNLFRRLFGEGAFNAAFVPAISSILHREGLEAATGFAEEATAVMAFWLGGVVIL
                     GEIFMPWVLFVLAPGFAGNHEKFTLAVALTRIMFPYLFFVCLTALFSGVLNAMGRFAA
                     AAAAPVLFNVFSIGFLLGLTPYVPNPGFAFAWGVSISGIAQLALVLWDIRRAGMRFTL
                     PRLRFSPRIKGLFQRMAPALVGAGVTQLNVSIDIIIGTLLPAGSVSILYYADRVNQLP
                     LGIIGTAAGTALLPAVTKHIALGEEKAAMGALNRAFESVLMLTLPAAVGLSVAGKQVM
                     DVLFVRGAFTEHNAIMAGHVLAAFALGLPVFALIKIFTPGFYARGDTVTPLKIGVGAV
                     ALNLCLNLLFMHPLKAVGPALATSLSSAFNAFLLFLLLRRREHFALDMLCRQRVPRIL
                     LSGLIMAGALYGTERLLPGTKTSIPEFLLLTIIGGVFYFGPGVLFGALDVEVFLRPLR
                     RRIGAGRKA"
     gene            complement(1699..2985)
                     /locus_tag="VEQ16_00885"
     CDS             complement(1699..2985)
                     /locus_tag="VEQ16_00885"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF006873.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HYP62406.1"
                     /translation="MAKLIVNGGKPLSGTIIPSANKNAVLPVLCATLATDAPITLRNV
                     PDITDVRKLLDYFRGIGSQVEADLNSGIVKLRHADPLTPEAARLPMGMRSTIMLIPAL
                     LHRFGKVILEDDSKGCTLGIREIDPHIELFRAFGAMVTAQPGGVEIIAPGPFQPIQHW
                     LDYASVTTTENFLICAVLAGGDSRLVNAACEPHVQEFSQFLQRMGARINGVGTSTLEV
                     TGGQALGGAEHVFADDFHEIVTFLALGAITGGKVRVRNKSPEQFQLLDRTFAKFGARV
                     HHEAGWSEAGGGPLRVQKTFTAHMIQKVEAAPWPYIPADLLPIFIALGMRAEGSVMFW
                     NKVYEGALGWTSELTKFGGQVVTCDPHRIITFGGAPLVPAEVESPYIIRAAIALLMLA
                     ASIEGRSVIINADPIRRAHPRFVENFQSLGADVSWA"
     gene            3248..>3782
                     /gene="trpS"
                     /locus_tag="VEQ16_00890"
     CDS             3248..>3782
                     /gene="trpS"
                     /locus_tag="VEQ16_00890"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003630976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HYP62407.1"
                     /translation="MARIFSGIQPTGIATLGNYLGALRNWVALQDGPDECAFCLVDLH
                     AITVFQNPEALRQQTRQMAALLLACGIDPKRSILFHQSGVSAHARLAWIFNCIARMGW
                     LKRMTQFKDKAGKNQEEVSTGLFVYPNLMAADIHAYHATKVPVGDDQLQHLELANDIA
                     EKFNHDYGVSFFPRIEPL"
BASE COUNT          576 a         1227 c         1196 g          783 t
ORIGIN      
        1 gagcttcgtc atgatacgcg gcgccttcac ggtcgggctc tggacaatgg caagccgcat
       61 tctcggcttt gtgcgtgata ttctcatcgc cgccatcctc ggcacaggcc ccattgccga
      121 tgccaccttc gtggcgctgc gcctgcccaa tctgttccgc cgtttatttg gcgagggcgc
      181 cttcaacgcc gcctttgtcc ccgccatctc ttccattctg catagagagg ggctggaggc
      241 cgcgactggc ttcgccgagg aggcgacggc ggtgatggcc ttctggctcg gcggcgtcgt
      301 catattgggc gagattttca tgccctgggt gctgttcgtg ctggcccccg gctttgccgg
      361 aaaccacgag aaattcaccc tggccgtggc gctgacgcgg atcatgtttc cgtatctgtt
      421 cttcgtctgc cttaccgccc tgttctcggg cgtgctcaac gccatggggc ggtttgcggc
      481 ggcggcggcg gcaccggtgc tgttcaatgt gttttccatc ggctttttgc tgggcctcac
      541 gccttatgtg cccaatcccg gttttgcctt cgcctggggc gtgagcattt ccggcatcgc
      601 ccagctggcc ctggtgctgt gggacatacg ccgcgccggc atgcggttta ctctgccgcg
      661 cctgcgcttc tcgccgcgca tcaaaggcct gttccagcgc atggcgccgg ctttggtggg
      721 ggcgggggtg acgcagctca atgtgtccat cgacatcatc atcggcacgc tgctgcccgc
      781 cggttcggtc tctatccttt attacgccga ccgcgtgaac cagctgcccc tcggcatcat
      841 tggcaccgcc gccggcacgg ctctgctgcc ggccgtgacc aagcatatcg ccctcggcga
      901 ggaaaaggcg gcgatgggag cgctcaaccg ggccttcgaa tcggtgctga tgctgaccct
      961 gcctgcggcc gttgggctct ccgtggcggg caagcaggtg atggatgtgc tgttcgtgcg
     1021 cggtgccttc accgagcata atgccatcat ggccgggcat gtgctggcgg ctttcgcgct
     1081 cggtctgccc gtcttcgcgc tgatcaagat ttttaccccc ggcttctatg cccgcggcga
     1141 tacggtgacg ccgctgaaga tcggcgtggg cgccgtggcg ttgaatttgt gcctcaacct
     1201 gctcttcatg cacccgctga aggcggtggg gccggccctg gccacctcgc tttcctcggc
     1261 cttcaacgcg tttctgctct tcctgctcct gcgccgccgc gagcattttg ccctggacat
     1321 gctctgccgc cagcgcgtgc cgcgtatcct tctctcaggc ctcatcatgg ccggggcgct
     1381 ctacggcacc gagcgcctgc tgccgggaac gaagaccagc atccccgaat ttctgctcct
     1441 caccatcatc ggcggcgttt tctatttcgg gccgggcgtg ctgttcggcg cgctggacgt
     1501 ggaggtattc ctgcggccgc tgcggcggcg tatcggcgcg gggcggaagg cttaagagac
     1561 tgttccagaa gtctactctg acggccgtct agcggcgttt ttctgcgctc cggtgctcgc
     1621 gtacttcatg tacgctccgc tccggtgctc gaaaaacacc accagccgac tcgccagagc
     1681 gacttctgaa acagtctctt aggcccagct gacgtcggca ccgagcgact gaaaattttc
     1741 gacgaaacgc ggatgggcgc ggcggatcgg gtcggcattg atgatcaccg aacgtccctc
     1801 gatgctcgct gccagcatca gcagcgcgat ggcggcgcgg atgatatagg ggctctccac
     1861 ctcggcgggc acgagcggcg cgccgccgaa ggtgatgatg cggtgcggat cgcacgtcac
     1921 cacctggccg ccgaatttgg tcagttccga agtccagccc agcgcgccct catagacctt
     1981 gttccagaac atgaccgagc cttccgcgcg catccccagc gcgatgaaga ttggcagcag
     2041 atcggccggg atatagggcc agggcgcggc ctccaccttt tggatcatat gcgcggtgaa
     2101 tgttttctgg acgcgtaagg gcccgccgcc tgcttccgac cagccggcct catggtgcac
     2161 acgcgcgccg aacttggcga aggtgcggtc gaggagctgg aactgttcgg gcgatttgtt
     2221 tcttacccgg accttgccgc cggtgatggc gccgagggcg aggaaggtga cgatctcgtg
     2281 gaaatcatcg gcgaagacat gctccgcgcc gcccagcgct tgcccgcccg tcacctccag
     2341 cgtggaggtg ccgacgccat tgatgcgcgc ccccatgcgc tgcaggaatt ggctgaattc
     2401 ctgcacatgc ggctcgcacg cggcattcac cagccgtgag tcaccgccag ccaggacggc
     2461 gcagatgagg aagttctccg tggtggtgac ggaggcataa tccagccaat gctgaatggg
     2521 ctggaacggg cctggggcga tgatttccac cccgccaggc tgggccgtga ccatggcgcc
     2581 gaaggcacgg aagagttcga tatgcgggtc gatctcgcgt atgccgagcg tgcagccttt
     2641 ggaatcatcc tccagaatca ccttgccgaa ccggtgcagc aaagcgggga tcagcatgat
     2701 ggtggagcgc atccccatgg gcaggcgcgc ggcctcgggg gtcagcgggt ccgcatggcg
     2761 cagttttacg atcccggagt tgaggtcggc ttccacctgg ctgccgatgc cgcggaaata
     2821 gtcgagtaat ttgcggacgt ccgtgatgtc gggaacattg cgcagggtta tcggcgcgtc
     2881 cgtggccagg gtggcgcaca gcaccggcag cacggcattc ttgttcgcgg agggaatgat
     2941 tgtgccgctg agtggcttac cgccattcac gatgagtttt gccatgggcc ttgctccttg
     3001 cggccagctt atcgcgccgg cgcgcggcgg caacgggccg ccaggcatgg cgcccttgtg
     3061 caatgcgggg cttgcgcgtt aggctcgcgc ccatggacat tgccctgctc tcccgcccgt
     3121 ttttctggtg gcgccgcgcc tgacgcgcgg tgcaggcttg tccctcccgc cgcgcgcacc
     3181 cgcccggcgc cttgtctcat cctgcgccgg cggctaactc cagccccaca ttccaggata
     3241 caattacatg gcacgcattt tttcaggcat tcagcccacc ggcatcgcga cccttggtaa
     3301 ttatctgggc gcgctgcgca actgggtggc gctgcaggat gggccggatg aatgcgcctt
     3361 ctgcctggtc gatttgcacg ccatcaccgt gtttcagaac cccgaggcgc tgcgccagca
     3421 gacgcgccag atggcggccc tgctgctggc ctgcggcatc gaccccaagc gctccatcct
     3481 gttccaccag tccggggttt cggcccatgc gcgcctggcc tggattttca actgcattgc
     3541 ccgcatgggc tggctgaagc gcatgacgca gttcaaggac aaagcgggca agaaccagga
     3601 ggaggtttcc accggcctgt tcgtgtaccc caacctgatg gccgcggaca ttcacgccta
     3661 ccacgccacc aaagtgccgg tgggggatga ccagctgcag catctggagc tcgccaacga
     3721 cattgccgag aaattcaacc atgattacgg cgtgtccttc ttcccgcgca tcgagccgct
     3781 gg
//
LOCUS       DASQCV010000066         1606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_176939, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000066 DASQCV010000000
VERSION     DASQCV010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_176939"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1029)
                     /locus_tag="VEQ16_00895"
     CDS             complement(<1..1029)
                     /locus_tag="VEQ16_00895"
                     /inference="COORDINATES: protein motif:HMM:NF014683.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015129 - lactate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015727 - lactate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HYP62408.1"
                     /translation="MSMWHQPIDPVLHSMALSALAAVVPLAFLLILMGILRKSAYVSA
                     AWALAVSLLVAIAVWRMPAGLAVMSAVYGFVYGLWPIMWIVFAALWLYNLAVDTGSFD
                     MLRHWMTEQASGNMCVQAIVVAFCFGALLEGTAGFGAPVAIGAFLLVAMGFTARRAVT
                     VALIGNTVPVAFGALGTPIVALAGVTGLDLNKLSSMVGRQLPFLSLVIPIYLVLVVAG
                     LKGLKEVWPAALVGGGAFALTQFGVSNFWGPYAPDILASAASIAALVVLLHFWRPSVS
                     PGVADPPENTAPASSHVVRAWLPWAVLAAVMVTWSYLKLFDRGSLKLAVPHLHNAIFI
                     SLYGKPYAA"
BASE COUNT          339 a          505 c          516 g          246 t
ORIGIN      
        1 cgcggcgtag ggcttgccgt aaagcgaaat gaagattgca ttgtgaagat gcggtactgc
       61 cagcttcagc gatcctcgat cgaacagctt caagtaagac cacgtcacca tcaccgccgc
      121 gagcaccgcc cagggcagcc aggctcggac cacgtggctg gaagctggcg ccgtgttttc
      181 cggcggatcg gcaacacccg gcgaaacgga aggccgccaa aagtgcagaa gcacaaccag
      241 cgcggcaatt gaggccgccg aagcgagaat atccggcgcg tagggacccc agaaattgga
      301 caccccgaac tgagtcaggg caaaagcccc gccgcccacg agcgccgctg gccagacctc
      361 cttcagacct ttgagcccag caaccaccaa caccagatag ataggaatta ccagagaaag
      421 aaagggaagt tgccgcccta ccatgctaga gagcttgttg aggtcgaggc cggtgacgcc
      481 cgccagtgcc acgatcggag tgcccagcgc cccgaacgcc acgggcacgg tgttgccgat
      541 cagcgccacg gtgaccgccc ggcgggcagt gaatcccatg gccaccagaa gaaaggcgcc
      601 gatggccacg ggcgcaccga aacccgccgt gccttcgagc aaggctccga agcaaaaagc
      661 cacgacgatg gcctgcacgc acatgttgcc ggaagcctgt tcggtcatcc agtgccgcag
      721 catatcgaaa ctgcccgtgt cgaccgccag gttataaagc cacagcgccg cgaagacgat
      781 ccacatgatg ggccagagcc cgtagacgaa accgtagacg gcgctcatga cggcaagccc
      841 cgccggcatg cgccacaccg cgatagcgac cagcagcgat accgccagcg cccaagccgc
      901 cgaaacgtac gctgacttgc gcaagatgcc catcaggatg agaaggaatg cgagaggcac
      961 gacggcggcc agcgccgaca aagccatgga gtgcaacacg gggtcgatag gctggtgcca
     1021 catgctcatg gcgactcttc tcctcgaatg ccgtctcgca agcacagcgc cctgcgagtt
     1081 ccgaaatcga agcagatacc ctatcacagc attcaagagg ctgcgaagaa gtgttgcggt
     1141 tatcgatttg cttagcctcg gagcttttga ggatcgcgct ccgggatctt caggcgggac
     1201 gcaggcacga ggcgatgctg gcaggcgcga tgggatgctc cccatcaccg atcattgcgg
     1261 cttatgttcc gggtgactcg cgccctttgt ttgcgctgga ggcccgccct gcgtccgggg
     1321 cggtgttgcg gtatgcggcg gcggcgcggg atgcgccgga acctctgtgt cgcgcatggg
     1381 gccggcgggc cttccctgac ggatgttgtc ctcctgctgg ggctcgagtg ggcggcccgg
     1441 gtgctggccc atcgccggtt catgcgcggt gaacggcaca tcgcgaggag gctctgcgct
     1501 ccgggtaatc acacgcggag aagtgaccgg cggcggaccg ctgaaggtgt accactgcct
     1561 ggtctcattt ttgctggccg ctggaggcgc tggcctggca ggttgc
//
LOCUS       DASQCV010000067         2743 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_11887, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000067 DASQCV010000000
VERSION     DASQCV010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2743
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11887"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..451)
                     /locus_tag="VEQ16_00900"
     CDS             complement(<1..451)
                     /locus_tag="VEQ16_00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HYP62409.1"
                     /translation="MRETAPAPSRAAILLPWDKQAAHEASRLAGRLRPAEARLAEAVG
                     LAASIGLVVVRERIFPLRSVTPATLFGKGQVEMEAPLLGEAEVDVVVVDAALTPVQQR
                     NLEKAWGAKVIDRTGLILDIFGARTRTREGALQVELAHLEYQRSRLVR"
     gene            complement(471..800)
                     /gene="hfq"
                     /locus_tag="VEQ16_00905"
     CDS             complement(471..800)
                     /gene="hfq"
                     /locus_tag="VEQ16_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HYP62410.1"
                     /translation="MANEKSQNVQDVFLNHVRKSKTPVTVFLVNGVKLQGVITWFDNF
                     SVLLRRDGHTQLVYKHAISTVMPGAPIMLFDASRTEGAAPAPVETSGKLTLSRQPEPQ
                     YDPDHED"
     gene            complement(971..1972)
                     /locus_tag="VEQ16_00910"
     CDS             complement(971..1972)
                     /locus_tag="VEQ16_00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A deacylase LpxR family protein"
                     /protein_id="HYP62411.1"
                     /translation="MKTVLSFRAALLAATVTLVLVPTAHADGTSSGGIWTLQGENASI
                     STTSPTDRYYVNGLHLGWTSPEGAVPGFIANAGHALLGEGTQRVSLGLTQQLYTPDNT
                     EAINPPTDDEPYAGYLVINLGFIQDTENTRTMLGANLGVIGRDAGGEITQNDFHSIIG
                     QKGTHGWAYQLPSEPAVDFLGARIWRIPLGHVGGLETDMLPQISGMAGLTAVYVQPAI
                     GFRIGSGLQSDYGPPLLAPSPYGGDAYTTVQPVAWYFFTSAASKFVGHDEVLEGSDFQ
                     NSRGVEVTRVVGTFNVGFAVIWRGLRFSYTQVFQTSRFHNQKGNIHEFGSFAVSGTF"
     gene            complement(2032..2700)
                     /locus_tag="VEQ16_00915"
     CDS             complement(2032..2700)
                     /locus_tag="VEQ16_00915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HYP62412.1"
                     /translation="MNILAPLPARLVIEIVFDFVCPWCYLGVKRLSFLLSRRQELDVT
                     LRWRPFLLNPDMPRGGMSRADYMIRKFGAEDRARRLYASIAELGAAEGIAFDFGAIRR
                     TPNSVDAHRLVREAGKLGVADALVQRLFAAHFVEGLDIGSHEVLATLAARHGMNEAVT
                     LEFLASGEGTEIIHAENLHAHRLGINGVPCFLIDGEHAIAGAQEMEVLERLIDLAICT
                     GRDR"
BASE COUNT          579 a          850 c          825 g          489 t
ORIGIN      
        1 accgcaccag gcgcgagcgt tgatattcca gatgcgccag ctccacctgc agcgcgcctt
       61 cgcgcgtacg ggtgcgggcg ccaaaaatgt ccaggatcag cccggtgcgg tctatgactt
      121 tcgcgcccca ggctttttcc agattacgct gctgcaccgg ggtaagggcg gcgtctacca
      181 ccacaacatc cacctcagcc tcgcccagca acggcgcctc catctccacc tggcccttgc
      241 cgaacaaggt ggcaggcgta acggaccgaa gcggaaagat acgctcgcgc accaccacca
      301 gcccgatgga ggcggccagc cctacagcct cggccagacg cgcctcggcc gggcgcaggc
      361 ggcccgccaa gcgacttgcc tcatgggcgg cttgcttgtc ccagggaagc agaatggcgg
      421 cgcggcttgg cgcgggtgcg gtctctctca tgcccgcacg atcatctcgc tcagtcttcg
      481 tggtccggat cgtattgcgg ctccggctgg cggctcaggg tcagcttgcc gcttgtctca
      541 acgggcgcgg gcgccgcgcc ttcggtccgg gaagcatcga agagcatgat cggcgcaccc
      601 ggcatcaccg ttgaaatcgc atgcttatag acgagctgcg tatgcccatc acggcgcagc
      661 agaaccgaga aattatcaaa ccaggtaatg accccctgca gcttcacacc attcaccaga
      721 aacaccgtca ccggcgtctt gctcttgcga acatggttga ggaacacgtc ctgcacattt
      781 tgcgattttt cgttggccac ggcggcatcc ttgtttttgt cacccgtgca tgggcgatgt
      841 ttcagttaat ctagaccaaa aatgaaagtt tcaagcggct gcgtggcgcg caccgccacc
      901 taacttctac actaaaattg tgcagtgcgg caagaaccgt aagttccgcc gcgccgccag
      961 agccccgggg ctagaaggtg cccgagaccg cgaaggagcc aaattcgtgg atattgccct
     1021 tttggttatg aaaacggctg gtttggaaca cttgtgtata gctgaaacga agccctcgcc
     1081 agatgaccgc gaaaccgaca ttgaacgtgc cgacgacgcg ggtcacctcc acgccgcggc
     1141 tattctggaa gtcggagccc tccagcacct cgtcatggcc gacgaatttg gaggcggcgg
     1201 aggtgaaaaa ataccatgcg accggttgca cagtggtgta ggcgtcaccc ccgtaaggag
     1261 acggggcaag caaaggcggg ccgtaatcgc tctgcaggcc gctgccgatg cggaacccga
     1321 tggccggctg cacataaacg gcagtgagcc cagccatgcc tgagatttgc ggcagcatgt
     1381 ctgtctccag cccgccgaca tggccgagcg ggatacgcca gatgcgcgcc cccaggaaat
     1441 ccacggccgg ctcggagggg agctgatagg cccagccatg ggtgcccttc tggccgataa
     1501 tggagtggaa atcattctgg gtgatctcgc cgcccgcatc ccggccgatg acgcccaaat
     1561 tggcaccgag catggtgcgg gtattctcgg tatcttggat gaagccgaga ttgatgacga
     1621 gatagccggc ataaggctcg tcatcggtgg gcgggttgat cgcctccgtg ttgtccggcg
     1681 tgtagagctg ctgcgtaagc cccaggctga cgcgctgcgt gccctcacca agcaaggcat
     1741 ggccggcatt ggcgatgaag ccaggcaccg cgccttccgg actggtccag cccagatgca
     1801 gcccgtttac ataataacgg tccgtcggag aggttgtgga aatggaggca ttctcgcctt
     1861 gcagcgtcca aataccaccg gaggaagtgc catcagcatg tgccgtgggt acaagcacaa
     1921 gcgtcaccgt ggcggccagc aatgccgcgc ggaaggataa gactgtcttc atagccccgc
     1981 agaatcataa aattagcaac agggtaagct tagccgatgc ggggaataaa gctaccggtc
     2041 ccggccagta cagatggcca gatcgatcaa acgttcgaga acctccatct cctgtgcccc
     2101 ggcgatggcg tgttcgccat cgataagaaa acagggcacg ccgttaattc ccagcctgtg
     2161 cgcatggaga ttctcggcat ggattatttc cgtgccttcg cccgaggcca ggaattccag
     2221 ggttacagcc tcgttcatgc catgccgtgc cgccagtgtt gcaagaacct catggctgcc
     2281 aatgtccagc ccctcgacga aatgggccgc gaacaagcgc tgcaccaggg catcggccac
     2341 ccccaatttc ccagcctccc gcaccagccg gtgggcgtcc actgagttgg gggtacggcg
     2401 gatagcgcca aaatcgaacg ctataccttc ggcggccccc aattcggcga tggaggcgta
     2461 caaccggcgg gcacggtcct cggcgccgaa tttgcggatc atgtaatcag cgcgcgacat
     2521 gccgcccctg ggcatgtccg ggttgagcaa gaaggggcgc cagcgcaacg tcacatccag
     2581 ctcctgccgg cgggacagca ggaaggacag gcgcttcacc cctagatagc accaggggca
     2641 gacgaaatcg aacacgatct cgatgaccag ccgcgctggc aatggggcga gaatgttcat
     2701 ggccctgcaa cctaatggaa ttgaccggcc aaggcgagat gtt
//
LOCUS       DASQCV010000068         3085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1670335, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000068 DASQCV010000000
VERSION     DASQCV010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1670335"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1219)
                     /locus_tag="VEQ16_00920"
     CDS             complement(<1..1219)
                     /locus_tag="VEQ16_00920"
                     /inference="COORDINATES: protein motif:HMM:NF017077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE3 domain-containing protein"
                     /protein_id="HYP62413.1"
                     /translation="MRQAVRTMQSRNARAFLLGAFALLLALILLAAWYGQVARDGARA
                     ESRLEQEQIQLTSLLYYVQQAETAQRGYLLMGEERYLTPYDIAVPQVPVVLAELGTMT
                     DISAVRPLVEGKMGELADTLALAKAGQRDAALALVRTDDGLHYMRQTRAWVAAQQQDV
                     AQRLAAIRAADERNASLFEITALLCVLATGGLAWAVISVYHRQTRRLIDLHDELNRVF
                     TLSADILAVVDQEGRLLSANPAWTKVTGRRADTNLFAAAHPEDGTALRAAFAPAGADA
                     DLREAEARLRCADGGEARVAWRVVTLPEAGQFYAIGRDVTHERAREEQLRQSQKMEMV
                     GQLTGGIAHDFNNLLTVIVGSLELLQRDAAGHDHKAARRIEAALEGGRRAAALTHRLL
                     AFARRQPLSPKTLE"
     gene            complement(1542..2960)
                     /locus_tag="VEQ16_00925"
     CDS             complement(1542..2960)
                     /locus_tag="VEQ16_00925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain fatty acyl-CoA regulator family
                     protein"
                     /protein_id="HYP62414.1"
                     /translation="MQKKIFAGERLRRAREQAGLKQTALAQRLGISASYLNQIEADQR
                     PLTPALLERLTDALHLPASHFADSEDARRETQLREDLADPLFRPFPNAPGELRALVRA
                     APAFAEAFMALYRAYSAQGEQLAAPDASLPRFPYDEVRDWVQSHQNHFGPLDRAAEQL
                     FEEKKFSSANLREDLRRYLRDAHGLVTASAPGLLGTGLFWRLNRQAKRLYLAEDVAPE
                     SETFWLAHVIGQLEQKALIEKELRRAIFTSPEALRLARIALANYFAGALMLPYTRLHE
                     AARAVRHDIQRLQHQFGASFEQIAHRLSTMQRPDLPGIPFYFAKTDIAGNILKRSSAT
                     RFQFAQFGGPCPLWNVYRAFAHPGEILVQLARTPDDVTYLNIARTVGRGAGSYLSRPR
                     AVAVVLGCETRYAAQTVYGAGLNLAPEALAPEAADLIGPGCRACERTNCRHRSVPPMG
                     RALDMGTAERGVVPYRLKGGLG"
BASE COUNT          550 a         1027 c          992 g          516 t
ORIGIN      
        1 cctccagcgt cttcggcgac agaggctggc ggcgggcgaa agccagcagc cggtgggtca
       61 gcgcggcggc gcggcgcccg ccttccagcg cggcctcgat gcgccgcgcc gccttatggt
      121 catgccccgc ggcgtcgcgc tgcagcagct ccaggctgcc gacgatgacg gtgagcagat
      181 tattaaaatc atgcgcgatg ccgcctgtaa gctgcccgac catttccatt ttctggctct
      241 gccgcagctg ctcctcgcgg gcgcgctcat gcgtcacgtc gcggcctatg gcgtagaact
      301 gtcccgcctc cggcagcgtc acgacccgcc acgccacgcg cgcctcgccg ccatcggcgc
      361 aacgcagcct ggcctccgct tcgcgcagat ccgcatccgc cccggctggg gcaaaggcgg
      421 cgcgcagggc ggtcccatcc tcgggatgcg ccgcggcgaa cagattggtg tcggcgcgcc
      481 tgccggtaac cttggtccag gccggattgg cgctgagcag ccgcccctcc tggtccacca
      541 ccgccagaat atcggcggag agcgtgaaaa cacggttcag ctcgtcatgc agatcgatca
      601 gccgccgcgt ctgccggtga tagacgctga tcaccgccca ggcgagcccg cctgtcgcca
      661 gcacgcaaag cagcgccgta atctcgaaca aactggcatt gcgctcgtcg gcggcgcgga
      721 tggcggccag gcgttgcgcc acatcctgct gctgcgccgc cacccaggcg cgggtctgcc
      781 gcatgtaatg cagcccgtca tcggtgcgca ccagggccag cgccgcatcg cgctggcccg
      841 ccttggccag ggccagcgtg tccgccagct cccccatctt gccctcgacc agcgggcgca
      901 cagcggaaat gtcggtcatg gtgccaagct cggccagcac caccggcacc tgcggcacgg
      961 cgatatcata tggggtaaga taacgctctt cgcccatcag cagataaccg cgctgtgctg
     1021 tttctgcctg ctgcacgtaa tagagcaggc tggtgagctg gatctgctcc tgctccagcc
     1081 gggattctgc ccgcgccccg tcccgcgcca cctggccgta ccaggcggca agcaggataa
     1141 gcgcgagcag caacgcgaag gcccccagca ggaaggcccg tgcattccgg ctctgcattg
     1201 tgcgcaccgc ctgcctcatg ccaccatctc cagggattaa aattcctcca tgatgtatgg
     1261 gttgtggcag agggtaccag cagcgtccag ccccgcgccg cccaggcggc agcttgatga
     1321 aacatttaat gcggggaggg ggacggggcg ttgggagcga aacaactata cgaaatattt
     1381 gtaattcctg gtaacttcaa taagcgtaaa ggcggattta cagctgggat acgggccgta
     1441 tgatcatgca tgggctgatt gagcgtctgc tgcgggcacg cggccgcctc ggccattgaa
     1501 gtacgccccc tcgcgctcag cgtaacgggc tacgccagaa tctagcctaa cccccccttc
     1561 aaccggtacg gcaccacccc gcgctccgcc gtccccatat ccagcgcgcg gcccatcggc
     1621 ggcacggagc ggtggcggca attggtgcgt tcgcaggcgc ggcagccggg gccgatcagg
     1681 tcggccgctt caggtgcaag cgcttcaggt gcaaggttaa ggcccgcgcc ataaaccgtc
     1741 tgcgccgcgt agcgcgtttc gcagcctagc accacggcca cggcgcgcgg gcgggagagg
     1801 taggagcctg ccccccgtcc cacagtgcgg gcgatgttga ggtaggtcac atcatccggc
     1861 gtgcgcgcga gctggaccag aatttcgccg ggatgagcga aggcgcggta cacgttccac
     1921 agcgggcagg ggccgccgaa ctgcgcgaac tgaaaccgcg tcgcgctcga acgtttgagg
     1981 atattcccgg caatatcggt tttcgcgaaa tagaacggaa tgcccggtag atccggccgc
     2041 tgcatggtgg aaagccggtg cgcgatctgc tcgaaactgg cgccgaactg gtgttgcagc
     2101 ctttgtatgt catgccgcac ggcgcgcgcc gcctcatgca aacgcgtata aggcagcatc
     2161 agcgcgccag cgaaataatt ggccagtgcg atgcgcgcca gccgcagcgc ctcgggcgaa
     2221 gtgaagatgg cgcggcgcag ctccttctcg atgagcgcct tctgctccag ctggccgatg
     2281 acgtgtgcca gccagaaagt ctcgctctcc ggtgccacat cctcggccag gtaaagccgc
     2341 ttcgcctgcc ggttgaggcg ccagaacagc ccggtgccga gcagccccgg cgcgctggcg
     2401 gtgacgagcc cgtgcgcatc ccgcagatag cggcgcaaat cctcccgcag attggcggag
     2461 gagaatttct tctcctcgaa aagctgctcg gccgcgcggt cgagcggacc aaaatggttc
     2521 tgatgggact gcacccagtc gcgcacttca tcatagggaa agcgtggcag tgaggcatct
     2581 ggtgctgcga gttgctcgcc ctgcgcgcta taggcgcggt acagcgccat gaaggcctcg
     2641 gcgaaagcgg gcgcggcgcg caccaaagcg cgcagctcgc ccggcgcgtt gggaaagggg
     2701 cggaagagcg ggtcggccag atcctcgcgc agctgggtct cgcgtctggc atcctcgcta
     2761 tcggcaaaat ggctcgccgg caggtggagt gcatcggtaa gccgttccag aagagcgggc
     2821 gtgagcgggc gctgatcagc ctcgatctgg ttgagatagc tggccgaaat ccccagacgc
     2881 tgggccaaag cggtctgttt cagcccggcc tgctcgcggg cgcggcgtag ccgctcaccg
     2941 gcaaagatct tcttctgcaa aagtttgctt ctccgtcacg gcgcaatttt tgcaaaattt
     3001 acaaaacccc gcaaggtttt cgctcttatc cgcaacgccc atactggacg gcgcccggtt
     3061 ttggcgcaaa gacatcggct caatc
//
LOCUS       DASQCV010000069         3802 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2168529, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000069 DASQCV010000000
VERSION     DASQCV010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3802
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2168529"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1120)
                     /gene="ccsA"
                     /locus_tag="VEQ16_00930"
     CDS             complement(<1..1120)
                     /gene="ccsA"
                     /locus_tag="VEQ16_00930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019090443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HYP62415.1"
                     /translation="MIPELGHFALACAVALAFAQGVVGIFGPSLRDARALFAAPVLAC
                     SHFAAVGTAFLALVWAGIVSDFTVENIADFSSAAVPLMYRISGVWGNHDGSILLWCLI
                     LSLCGLAVALFGGELPASLRARVLGVLGLVSGGFLLFTLTVSDPFTRLWPPPLDGAGM
                     NPILQDPGLAFHPPVLYTGYVGFSVAFAFAIAALIEGRVDAAFGRWVRPWALLSWCFL
                     TGGIALGSWWSYYTLGWGGYWFWDPVENAALLPWLTGTALLHCAIVVEKREALKAWTV
                     LLAIATFSLSLCGTFLVRSGILNSVHSFAAAPDQGMFILALLGLTIGGSLLLFAIRAP
                     VLAATGIYAPISRESALVLNNVFLCAIAAVVFTGTLYPP"
     gene            complement(1117..1644)
                     /gene="ccmE"
                     /locus_tag="VEQ16_00935"
     CDS             complement(1117..1644)
                     /gene="ccmE"
                     /locus_tag="VEQ16_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011630978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HYP62416.1"
                     /translation="MRTPKRRRLYLVLACGICFAAAVGLTLAAFSSSLTYFLSPRQLV
                     ASPPPAGQSFRLGGIVEVGSVDTILAGQTPTTHFAVTDGRAAVNVTFTGVLPDLFREG
                     QGVVAIGAMGPGGVFVADEVLAKHGAAYMPKDVEQALQDAGKWDPKFGPPPNASSWNT
                     MQLPASGGAQVKAGS"
     gene            complement(1646..1774)
                     /locus_tag="VEQ16_00940"
     CDS             complement(1646..1774)
                     /locus_tag="VEQ16_00940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62417.1"
                     /translation="MNPWPFINGAYGVSVLFLAVAGGLSFARYRRARRRLAAAEKA"
     gene            complement(1771..2547)
                     /gene="ccmC"
                     /locus_tag="VEQ16_00945"
     CDS             complement(1771..2547)
                     /gene="ccmC"
                     /locus_tag="VEQ16_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010668633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease CcmC"
                     /protein_id="HYP62418.1"
                     /translation="MNEEVLSGTRPVRAGGWLHYLANPARFMRVAVPTLPWLSGIALL
                     LCVVGIVWGYAIAPADWEQGDAARIMYVHVPAAWVAMVGYAALAVCSLLSIVWRHPLA
                     DIAAEEIGPVGAGFTAVCLISGSLWGKPMWGAYWVWDARLTSVLILFFLYLGHVALIR
                     AFDNKAHGYRAAAILALAGAVNLPIIVYSVQWWNTLHQGNTISLSGGAKIYITMLYPL
                     LISTLGFYLAFIAMVVARICAAICERKTASALLAAAERRA"
     gene            2612..3028
                     /locus_tag="VEQ16_00950"
     CDS             2612..3028
                     /locus_tag="VEQ16_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HYP62419.1"
                     /translation="MTNYWLVKSEPDAFSWDQQVKNGVEPWTGVRNHTAKLNLKAMKK
                     GDYAFFYHSNTGKEIVGIVKVVKEAYPDPSAESGGWVCVDMKAVKPLKHPVTLAAIKA
                     DPRFAELALLRQSRLSVGPVSAEHWAMLCEMGGVHV"
     gene            3021..3551
                     /gene="msrA"
                     /locus_tag="VEQ16_00955"
     CDS             3021..3551
                     /gene="msrA"
                     /locus_tag="VEQ16_00955"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HYP62420.1"
                     /translation="MSEIAVLAGGCFWCLEAAYDELRGVLNVKSGYAGGSTANPTYKQ
                     VCSGTTGHAEVVQIEFDPAVISFADLLDVFFTIHDPTTLNRQGADVGTQYRSAIFYTS
                     PEQKAESEAAVEKFAPHWGKIVTEIVPLTMFYPAEKEHEDYFVNNPWSGYCQAVIAPK
                     IAKLRKTFRERLKAAA"
     gene            complement(3567..>3802)
                     /locus_tag="VEQ16_00960"
     CDS             complement(3567..>3802)
                     /locus_tag="VEQ16_00960"
                     /inference="COORDINATES: protein motif:HMM:NF012308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serpin family protein"
                     /protein_id="HYP62421.1"
                     /translation="LYVGAVMHKAHIGVDEQGTEAAAATAVVMMADAAAPMPGPPPPP
                     PVPFIADHPFLYLIRSAQTGEILFMGRVDDPTQ"
BASE COUNT          850 a         1220 c         1183 g          549 t
ORIGIN      
        1 aaggcgggta gagcgttccg gtgaacacca cagcggcgat ggcgcagaga aacacattat
       61 tcagcaccaa ggcgctctcg cgcgaaatgg gcgcgtaaat cccggtcgct gccagcaccg
      121 gcgcgcgtat ggcgaaaagt agcagcgagc cgccgatggt caggccaagc agtgccagaa
      181 tgaacatccc ttggtccggc gccgcggcga agctgtgcac cgaattgaga atgccggacc
      241 ggaccagaaa cgtgccgcag agcgagagcg agaatgtggc gatggccagc agcacggtcc
      301 aggccttcaa cgcctcgcgc ttctccacca cgatggcaca atgaagcagt gccgtgccag
      361 tgagccaggg tagcaaagcc gcattctcca ccgggtccca gaaccagtac ccgccccagc
      421 ccagcgtgta gtagctccac cagctgccca gcgcgatgcc gccggtgagg aagcaccagg
      481 agagcagggc ccagggccgc acccagcgcc cgaaagcggc atccacgcga ccctcgatga
      541 gcgcggcgat ggcgaacgcg aaagccaccg agaacccaac atagccggtg tagagaaccg
      601 gcggatgaaa cgccaagcct gggtcctgca aaatcgggtt catccccgcg ccatccaaag
      661 gcggcggcca taggcgggtg aacgggtcgg acacggtcag ggtgaagagt aaaaacccgc
      721 ccgagaccag ccccagcacg cccagcaccc gtgcccgcag gctcgccggc agctcgccgc
      781 cgaacaaggc cacggccagg ccgcaaagcg aaagaatgag gcaccagagc aggatggagc
      841 cgtcatgatt cccccacaca ccggagatgc gatacatcag cggcacggcg gcggaggaaa
      901 aatccgcgat attttcgacc gtaaaatccg agacgatacc ggcccacacc aaagccagaa
      961 acgccgtacc aacggcagcg aaatggctgc aagcaagcac aggtgcggcg aacaacgccc
     1021 gcgcatcgcg caaggatggg ccaaaaatcc ccaccacccc ctgggcgaag gccaaagcca
     1081 ccgcgcaggc caaggcgaaa tgaccaagtt cggggatcat gagccggcct tcacctgcgc
     1141 cccgccggag gcgggcaact gcatggtatt ccagctgctg gcattgggcg gcggcccgaa
     1201 tttcgggtcc catttgccgg catcctgcaa cgcctgctcg acatccttcg gcatataggc
     1261 ggcgccatgc ttggccagta cctcatccgc cacgaatacc ccgcccggcc ccatggcgcc
     1321 gatggccacc acaccctggc cctcgcggaa cagatccggc agcacacccg taaaggtgac
     1381 attcacggcg gcgcggccat cagtgacggc gaaatgggtg gtcggggtct ggccggcgag
     1441 aattgtatcc acgctgccca cctcgacgat gccgcccagc cggaaactct gccccgccgg
     1501 cggcgggctt gccacgagct ggcgcggcga gaggaaatag gtgagggagg aggaaaaagc
     1561 cgcgagcgtc agccccacgg cggcggcaaa gcagatgccg caggccagca cgaggtacag
     1621 gcggcggcgc ttgggcgtac gcatgtcagg ccttttccgc tgccgccagg cgccggcgcg
     1681 cgcgccggta gcgcgcaaaa ctcaagcccc cggccacggc caggaacagt accgagacgc
     1741 cataggcgcc attgatgaag ggccagggat tcatgcgcgc cgctccgccg ccgccagcag
     1801 cgcgctcgcc gtcttgcgct cgcaaatggc ggcgcagatg cgcgccacca ccatggcgat
     1861 gaaggccaga tagaacccca gcgtcgagat aagcagcggg tagagcatgg tgatgtagat
     1921 ttttgcgcca cccgacaagg aaattgtgtt gccctggtgc agcgtgttcc accactgcac
     1981 cgaataaacg atgatgggca ggttcaccgc cccggccagc gccagaatgg cggcggcgcg
     2041 gtagccatgg gccttgttgt cgaacgcgcg gatgagcgcg acatggccga gatagaggaa
     2101 aaacaggatg agcaccgagg tgagccgcgc atcccacacc caataggcgc cccacatcgg
     2161 cttgccccag agcgagcccg agatgaggca cacggccgta aacccggccc ccacaggccc
     2221 gatttcctcg gccgcgatat ccgccagcgg gtggcgccag acgatggaga gcagcgagca
     2281 gaccgccagc gccgcatagc ccaccatggc cacccaggca gccgggacat gcacatacat
     2341 gatgcgcgcc gcgtcgccct gctcccagtc cgctggggca atggcatagc cccacacgat
     2401 tcccaccacg cacagcagca aggctatgcc ggagagccag ggcaaagtcg gcaccgccac
     2461 gcgcataaaa cgcgccggat tcgccagata atgcagccag ccaccagctc ttaccggccg
     2521 ggtgccagac aggacttcct cattcatagc ttggtcatat gccatacgcg ccgcgatttg
     2581 aaggcagagt taattgcgat aagctcatat catgacaaat tattggctcg taaaatccga
     2641 acccgacgcc ttttcctggg accagcaggt gaaaaacggc gtggagccct ggaccggcgt
     2701 gcgcaaccac accgccaagc tcaacctcaa agccatgaaa aagggcgatt acgccttctt
     2761 ctaccattcc aataccggca aggagattgt cggcatcgtg aaagtggtga aggaggccta
     2821 ccctgatcct tcggccgaga gcggcggctg ggtctgtgtg gacatgaagg cggtgaaacc
     2881 ccttaagcat cctgtaaccc ttgcggccat aaaagcggac cccagattcg cggaactggc
     2941 tctgttgcgt cagtcccgcc tgtcggtcgg gcctgtcagc gccgagcatt gggcgatgtt
     3001 gtgcgagatg ggaggggttc atgtctgaaa tcgcggttct ggcgggtggc tgcttctggt
     3061 gcctcgaggc ggcctatgac gagctgagag gagtcttgaa cgtcaaatct ggctatgccg
     3121 gcggtagcac ggccaacccc acctacaagc aggtctgcag cggcaccacc ggacatgccg
     3181 aagtggtgca gatcgagttc gacccggcag tgatcagctt cgccgacctc ctggacgtgt
     3241 tcttcaccat ccacgacccc accaccctca accgccaggg cgcggatgtc ggcacgcaat
     3301 atcgctccgc cattttctac acctcgccgg agcagaaggc ggaatcggaa gcggcggtgg
     3361 agaaattcgc gccgcattgg ggcaagatcg tcacggaaat cgtgccgctc acaatgttct
     3421 atccggcgga gaaggagcat gaggattatt tcgtgaataa tccctggtcc ggctattgcc
     3481 aggcggtgat tgcgccgaag attgcgaagc tacggaagac gttccgggag cggctgaagg
     3541 cggcggcgta ggcgccgtca attgctctac tgagttggat catccacccg gcccatgaac
     3601 aatatctcgc cagtctgtgc cgagcggatc aggtaaagaa acggatggtc ggcgatgaat
     3661 ggcacaggcg gtggcggggg tggtcctggc attggcgcag ccgcatcggc catcatcacg
     3721 acggctgtgg ccgccgccgc ctcggtgcct tgctcatcga caccgatatg ggccttatgc
     3781 atgaccgctc cgacataaag cc
//
LOCUS       DASQCV010000070         3108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2665874, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000070 DASQCV010000000
VERSION     DASQCV010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2665874"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..739)
                     /gene="bioB"
                     /locus_tag="VEQ16_00965"
     CDS             complement(<1..739)
                     /gene="bioB"
                     /locus_tag="VEQ16_00965"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HYP62422.1"
                     /translation="MPDSYNVTISRWSRADVAALLALPFPELLFRAQSVHREHFDPTK
                     IQISTLLSIKTGGCPEDCGYCPQAAGYETGTKAGKLMAVEKVLEEARAAKAKGAARFC
                     MGAAWRNPKEHDLDSVCEMVAGVKALGMESCVTLGMLTGAQAEKLKLAGLDYYNHNLD
                     TSPEYYGQVISTRTYQDRLDTLANVRDAGINVCCGGIVGMGEDESDRAGLIATLASLE
                     VPPESVPINALVAVEGTPLAKAEPIDAI"
     gene            806..1468
                     /gene="bioD"
                     /locus_tag="VEQ16_00970"
     CDS             806..1468
                     /gene="bioD"
                     /locus_tag="VEQ16_00970"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: protein motif:HMM:NF024891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HYP62423.1"
                     /translation="MTSYFITATGTDIGKTHTIAGLIRAGRELKRDFAAIKPILTGYD
                     NETAPKSDPAVLLNAMGRPNNPRNIATISPWRFTAPLSPDMAAAREGKHIILKDVVTF
                     CEAAIAAAPGTLLIEGIGGVAVPLNEENIVSDWISALNIPAILVAGTYLGTLSHIITA
                     GALLSAQGIQIAAIVLNESENAPVLGEEIAATLERFAACPIHIIPRSFDDGSFKKLAA
                     SL"
     gene            complement(1661..>3108)
                     /gene="groL"
                     /locus_tag="VEQ16_00975"
     CDS             complement(1661..>3108)
                     /gene="groL"
                     /locus_tag="VEQ16_00975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423234.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HYP62424.1"
                     /translation="LGAQLIREVASKTNDLAGDGTTTATVLAQAIVREGVKAVAAGLN
                     PMDLRRGIDKAVAAVVEELKAKSKKITNPAETAQVGTISANGETEIGDMISQAMQKVG
                     NEGVITVEEAKGIQTELDVVEGMQFDRGYVSPYFITNPEKMVADLDSPYILIFEKKLS
                     QLQPMLPLLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRK
                     AMLEDIAILTGGQVISEDLGIKLESVTLAMLGRAKKILIEKENTTIIEGVGAKDDITG
                     RVNQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGASEVEVKERKDRVDDALHA
                     TRAAVEEGIVPGGGVALARASQILNNIKTENNDQQTGIEIVRRAIQVPLRQIAENAGE
                     DGAVIAGKVLDNKEYEHGFDAQTGAFKNLVGAGIIDPTKVVRTALQDAASVASLIITT
                     EAGVTEKPEKKAPMGAPGGMGGMGGMGDMDF"
BASE COUNT          562 a         1037 c          885 g          624 t
ORIGIN      
        1 cgatcgcatc gatcggctcg gccttggcca aaggtgtgcc ctcgaccgcc accagcgcgt
       61 tgatgggcac ggattcgggc ggcacctcaa ggctcgccag cgtcgcgatc agcccggcgc
      121 ggtcgctctc atcctcgccc atgccgacga tcccgccgca gcacacgttg atcccggcat
      181 cccgcacatt ggccagggta tccagccggt cctgataggt gcgggtggaa atcacctgcc
      241 cataatattc cggcgaggtg tccaggttgt gattataata atccagccca gcgagtttca
      301 gcttctccgc ctgcgccccg gtgagcatgc ccaaagtcac gcaactctcc atgcccagcg
      361 ccttcacccc ggccaccatc tcgcacacac tgtccagatc atgctctttc gggttgcgcc
      421 acgcagcacc catgcagaag cgcgcagcac cctttgcctt ggccgcccgc gcctcctcca
      481 gaaccttctc caccgccatc agcttcccgg ccttggtccc agtctcatac cccgccgcct
      541 gcgggcaata accgcaatcc tcagggcagc cgccggtctt gatggagagc agcgtggaaa
      601 tctgaatctt cgtcggatcg aaatgttccc ggtgcacgct ctgggcccgg aacagcaatt
      661 caggaaacgg caatgccagc agagccgcca catccgcccg gctccaacgc gaaattgtca
      721 cattatagct atctggcacc cgaaaactcc aaaaatcgat tgtgacccaa ttaaacccat
      781 gcttcaaatg agggaagaga gggtcatgac aagttacttt atcacagcga ctggtacaga
      841 tatcgggaaa acccacacga ttgcaggcct catccgcgcc ggccgcgagc tgaagcgaga
      901 tttcgccgcc ataaaaccga tccttaccgg ctatgataat gaaactgctc ccaaatccga
      961 ccccgcagtg ctgctgaacg ccatggggcg ccccaataat ccgcgcaata ttgctacaat
     1021 aagcccgtgg cgcttcactg ccccgctctc gccggacatg gccgctgccc gcgaaggcaa
     1081 gcacataatc ctgaaagatg tcgtcacctt ctgcgaagcc gccatcgccg ccgcccccgg
     1141 cactctcctt atcgaaggta tcggcggcgt cgccgtcccg ctcaacgagg aaaacatcgt
     1201 ctcagactgg atttccgccc tcaatatccc ggccatcctg gtcgcaggca cctatcttgg
     1261 cacgcttagc cacatcatca ccgcgggcgc cctcctttct gcccagggca tccaaatcgc
     1321 cgccatcgtg ctgaatgaaa gcgaaaacgc ccccgtgctg ggcgaggaaa tcgccgcgac
     1381 gctggaacgt ttcgccgcgt gcccgatcca tatcattccg cgtagtttcg atgatgggtc
     1441 gtttaagaag ttggcggctt ctttgtaggg tttttacgcc ttttgcaaaa agacgcgcca
     1501 taaattttca taccttgggc cacgggctgt gacttcatgg ggggcttccc atggagtcac
     1561 agcccgtggc ccaaggtatg ggggtctggg gcaaagcccc taaacaagaa accccggcat
     1621 ctctgccggg gtttctttcg tcctaacgtc agagcgtgga ttagaaatcc atatcgccca
     1681 tgccgcccat gccgcccatg ccgccgggcg cgcccatcgg ggccttcttc tcgggcttct
     1741 cggtcacgcc ggcttcggtc gtgatgatca gagaggccac ggaagcagcg tcctgcaggg
     1801 cagtgcgcac aaccttggtc gggtcgatga tgccggcgcc aaccaggttc ttgaacgcgc
     1861 cagtctgagc gtcgaagcca tgctcgtact ctttattgtc gagcaccttg ccagcgatca
     1921 cggcgccgtc ttcaccggcg ttctcggcga tctggcgcag cggcacctgg atggcgcggc
     1981 gcacgatctc gatgccggtc tgctggtcgt tgttctcagt cttgatgttg ttcaggatct
     2041 gagaggcgcg ggccagggca acaccgccgc ccggcacaat gccttcctcg acggcagcgc
     2101 gggtggcatg cagcgcgtcg tccacgcggt ccttgcgctc cttcacctca acctcggaag
     2161 ccccgccgac gcggatgacg gcaacgccgc cagccagctt ggccagacgc tcctgcagct
     2221 tctcgcggtc atagtccgag gtggtctcct cgatctgtgc gcggatctgg ttgacgcggc
     2281 cagtaatgtc gtccttggcg ccaacaccct cgatgatcgt ggtgttttcc ttctcgatga
     2341 ggatcttctt ggcgcggccc agcatggcca gcgtcacgga ctcgagcttg atgccgagat
     2401 cctcggagat cacctggccg ccggtgagga tggcgatgtc ttccagcatg gccttgcggc
     2461 ggtcgccgaa gccaggggcc ttcacggcag cgatcttcag gccgccgcgc agcttgttca
     2521 ccaccagggt ggccagggcc tcgccctcaa cgtcctcggc gatgatcagc agcggcttgc
     2581 cggtctgcac cacggcttcc agcagcggca gcatgggctg cagctgagac agcttcttct
     2641 cgaagatcag gatgtacggg ctgtcgaggt ccgcaaccat cttctccggg ttggtaatga
     2701 agtaggggga gacatagccg cggtcgaact gcatgccctc gacgacgtcc agctcggtct
     2761 ggatgccctt ggcttcctca accgtgatca cgccttcatt gccgaccttc tgcatggcct
     2821 gggagatcat gtcgccgatc tcggtctcgc cattggcgga gatggtgcca acctgcgcgg
     2881 tctcggccgg gttggtgatt tttttgctct tcgccttcag ctcctcgacg acggccgcaa
     2941 ccgccttgtc gatgccgcgg cgcaggtcca tcgggttcag accggcggca accgccttca
     3001 cgccctcgcg cacgatggcc tgggccagca cggtcgcggt ggtggtgccg tcgccggcga
     3061 ggtcattggt cttggaggcg acttcgcgga tcagctgggc gccgaggt
//
LOCUS       DASQCV010000071         1971 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2500161, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000071 DASQCV010000000
VERSION     DASQCV010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2500161"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..333)
                     /locus_tag="VEQ16_00980"
     CDS             complement(<1..333)
                     /locus_tag="VEQ16_00980"
                     /inference="COORDINATES: protein motif:HMM:NF015658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF305 domain-containing protein"
                     /protein_id="HYP62425.1"
                     /translation="MAMRVRIVPSWRRWTRPRRAGLRGRVTPRLATDGTGEDEDAICF
                     AGFLPAASARRFRWTGAGHGFVAMMIPHHEGAVNMAGTELKYRKYPEMRQLAASIVAA
                     RKREIAEMR"
     gene            complement(236..679)
                     /gene="cueR"
                     /locus_tag="VEQ16_00985"
     CDS             complement(236..679)
                     /gene="cueR"
                     /locus_tag="VEQ16_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006878 - intracellular copper ion
                     homeostasis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HYP62426.1"
                     /translation="MTLVTIAQASAATGVSAKMIRHYESIGLIRAPVRTENRYRHYAE
                     ADLHDLGFIRRARDLGFSFEDIRQLLDLWRNKGRSSAEVKAIALRHIQELDEKAAQLA
                     AMSRTLKQLAEACHGDARPDCPILEALDAPAPRRSARAGDASFGH"
     gene            complement(676..>1971)
                     /locus_tag="VEQ16_00990"
     CDS             complement(676..>1971)
                     /locus_tag="VEQ16_00990"
                     /inference="COORDINATES: protein motif:HMM:TIGR01525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HYP62427.1"
                     /translation="EALPVPRSEGARLLAGTLNLDGVLRLRVTAPAGESFLDRMARLI
                     AAAQSEKPPIQRLVDKVAAVFVPVVLALAVFTFALWCLHGAPVGTAIINAVSVLVIAC
                     PCALGLATPAALLAGTAAGARLGILFRNAAALQAAARADMVVFDKTGTLTSGTPHLAS
                     VTQLGAMPVSRAREIAAALAAGDTHPLSAALRLPDVAPAAEVRALPGQGLRGVVAGRA
                     YLLGSAALVPGVSAPADGASWSYLAEEGGAPLAGFAFTDSLRPGAREAVIRLRQDGLR
                     VLLLTGDRREAAEALGLDIDIVAGATPEKKLEVIRDLRAAGHEVAMLGDGINDAAALA
                     AATIGVAMGAGAEVAIEAADISLLRPDPLLAVAALHLARKYWAVLWQGLFWAMFYNVI
                     AIPAAAFGLLNPTLAGAAMAASSLCVLGNALRLRHWRFQ"
BASE COUNT          366 a          732 c          594 g          279 t
ORIGIN      
        1 tcgcatctcg gcaatctccc gtttccgcgc cgcgacgatg ctggccgcca gttggcgcat
       61 ttcgggatac ttgcggtatt tcagctcggt cccggccata ttcaccgcgc cttcatggtg
      121 tggaatcatc atcgccacga aaccatgccc tgcacctgtc cagcggaaac gccgggcaga
      181 agcagcgggg agaaaaccgg caaagcatat cgcatcttca tcttcacccg tcccgtcagt
      241 ggccaaacga ggcgtcaccc gcccgcgcag accggcgcgg cgcgggcgcg tccagcgcct
      301 ccaggatggg acaatccgga cgcgcatcgc catggcaggc ttcggcaagc tgcttcaacg
      361 tgcggctcat tgccgccaat tgcgccgcct tctcgtccag ctcctggata tggcgcagcg
      421 caatcgcctt cacctcggcc gagctgcgcc ccttattgcg ccataaatcc agcaactggc
      481 ggatatcctc gaaggagaaa ccaagatcgc gggcacggcg gatgaagccg agatcatgca
      541 gatcggcctc ggcataatgg cggtagcgat tctcggtgcg caccggcgcc ctgatgaggc
      601 cgatgctctc atagtgccgg atcattttcg ccgagacccc ggtggcggcc gaagcctgcg
      661 cgatcgttac caatgtcatt gaaacctcca atggcgcagt ctgagcgcat tgccaagcac
      721 gcagagcgat gaggccgcca tggccgcccc tgccagcgtg gggttgagca gcccgaatgc
      781 ggcggcggga atggcgatga cgttataaaa cattgcccag aacaacccct gccacagcac
      841 cgcccagtat ttccgcgcca gatgcagcgc cgccacggcc agcagcgggt ccggccgcag
      901 gagtgagata tcagccgcct cgatggccac ttccgcgccc gcccccatgg ccacgccgat
      961 cgtcgcggca gccaaagcgg cggcgtcgtt gatgccatcg cccagcatcg ccacctcatg
     1021 cccagcggcg cgcagatcgc ggatcacttc gagctttttc tccggggtgg cgccagcgac
     1081 gatatcgatg tccagcccca gagcctccgc cgcctcgcgc cggtcgccgg tcagcagcag
     1141 cacgcgcaaa ccatcctggc gcagccgtat caccgcctca cgcgcgccag ggcgcaagct
     1201 atccgtaaag gcgaagcccg ccaatggcgc gccgccctcc tcggcaagat aggaccagct
     1261 ggcgccatct gcgggcgcgc tcacgcccgg caccagggcg gcagagccca gcagataagc
     1321 acgccccgcc accacgccgc gcaggccctg gcccggcagc gcccgcacct ccgcggccgg
     1381 cgccacgtcc ggcaggcgca acgccgcgct caaaggatgc gtatcacccg ccgccagcgc
     1441 cgccgcgatt tcacgagcgc gggataccgg catggcgccc agctgagtca cgctcgccag
     1501 atgcggcgtg ccactggtca aagtgccggt cttgtcgaac accaccatgt ccgcccgcgc
     1561 cgccgcctgc agcgcggcgg cattgcggaa taagatgccg agccgtgccc ccgccgctgt
     1621 acccgccagc aaagcggcag gcgtggccag gcccagcgcg caagggcagg caatcaccag
     1681 cacggacacc gcattgatga tcgccgtgcc cacgggcgcc ccatgcaggc accacagcgc
     1741 gaaggtgaac accgccaacg ccagcacaac gggcacgaaa accgccgcca ccttgtccac
     1801 cagcctctgg atgggcggct tttcgctctg cgccgcggcg atgagccgcg ccatgcggtc
     1861 gaggaaactt tcccccgccg gggcggttac gcgcaggcgc agcacgccat ccagattcag
     1921 cgttcccgcc agcaacctcg caccctcact gcgcggcacg ggcaaggctt c
//
LOCUS       DASQCV010000072         3704 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1505341, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000072 DASQCV010000000
VERSION     DASQCV010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3704
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1505341"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..221)
                     /locus_tag="VEQ16_00995"
     CDS             complement(<1..221)
                     /locus_tag="VEQ16_00995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62428.1"
                     /translation="MTQNMARNPLFDAQWRARLASAEAALQAARAEETSCAATGFGSH
                     AHRHALARLDAARAARHDAWRMQFETVAT"
     gene            complement(228..1106)
                     /locus_tag="VEQ16_01000"
     CDS             complement(228..1106)
                     /locus_tag="VEQ16_01000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYP62429.1"
                     /translation="MTLADDNQLLPNLGQRVKLARARRGMTRRILAEEAQVSERHLAN
                     LESGTGNVSILVLAQVAQALGCSLAELLGDETTSSPEWLMVRRLLHDRTPAELARARQ
                     ALSELFGDSSAAQGRRDRIALVGLRGAGKSTLGQMAANELGVPFIELRAEITRIAGCA
                     PIEIQALYGSNAYRRYERQALEETLRDNKACVIATAGGLVGDTATFGLLLQNCFTVWL
                     QAKPEDHYARVLAQGDQRFMPGNRNGVDDIRLTLESRAGFYSKADLAFNTSGQTLDEA
                     FTGLMKVLRRETGRVF"
     gene            1302..1853
                     /gene="hslV"
                     /locus_tag="VEQ16_01005"
     CDS             1302..1853
                     /gene="hslV"
                     /locus_tag="VEQ16_01005"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HYP62430.1"
                     /translation="MTEHYDPVGWHGTTILSVRRGDQVVVAGDGQVSLGNTVVKGNAR
                     KVRRIGGGSVLAGFAGATADAFTLLERLESKLERFPNQLERACVELAKDWRTDRYLRR
                     LEAMLIVADKERGFTVTGNGDVLEPNDGIIAIGSGGNYALSAARALITVPDLSAEEIA
                     RRAMKIAADICIYTNENLIVETL"
     gene            1853..3166
                     /gene="hslU"
                     /locus_tag="VEQ16_01010"
     CDS             1853..3166
                     /gene="hslU"
                     /locus_tag="VEQ16_01010"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010506524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HYP62431.1"
                     /translation="MDAPVYSPREIVSELDRFIIGQNDAKRAVAIALRNRWRRQQLPE
                     EMRDEVVPKNILMIGPTGCGKTEIARRLAKLAQAPFLKVEATKFTEVGYVGRDVESIV
                     RDLVETSITMLREQNRKGVEAKAELAAEERLITALVGEGASADTRVKFRRMLRAGELE
                     DKEIEISLSDGGTPIGVIDLPNMPQGGSINIGDMMKGMFGRPTTRKKMHVPDARRALA
                     REEADKLLDTEALTKDALSHAEQNGIVFLDEIDKICAHSEGGFRGADVSREGVQRDLL
                     PLIEGTTVSTKYGPVKTDYILFIASGAFHVAKPADLLPELQGRLPIRVELNSLSRDDF
                     KRILTETEHSLLKQSTALLGTENVTLNFADDAVDAIAGLAFDINDRVENIGARRLATV
                     IERLLEEISFTASDRSGDTLTIDAAYVNERVAPLAAKGDLSRFIL"
     gene            3287..>3704
                     /locus_tag="VEQ16_01015"
     CDS             3287..>3704
                     /locus_tag="VEQ16_01015"
                     /inference="COORDINATES: protein motif:HMM:NF014639.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HYP62432.1"
                     /translation="MNHRLAGLSAALVALAALAAAYYAQYVLHLTPCELCLWERWPYR
                     VVVVLGLLAMMGRPRTARWLLGVAGFVMLANVAIAGLHAGVEFNWWNSPLPECNGALV
                     PGQALPLTPATPCDRPVYPITLVPISMAQMDFALSAL"
BASE COUNT          642 a         1212 c         1169 g          681 t
ORIGIN      
        1 taggtggcga cggtctcgaa ttgcatgcgc caggcatcat gccgtgccgc gcgcgccgca
       61 tccagcctgg ccaaagcatg acgatgggca tggctgccaa aaccggtggc ggcgcagctt
      121 gtctcctcgg cgcgggccgc ctgtagtgcc gcctcggcag aagccagccg cgcccgccat
      181 tgcgcatcaa agagcgggtt gcgcgccatg ttctgtgtca tgggggctta aaaaacccgg
      241 ccggtttccc gccgcagcac cttcatcagc ccagtaaaag cctcgtccag cgtctgcccg
      301 ctggtgttga aggcgagatc cgccttggaa tagaagcccg cgcggctttc cagggtcagg
      361 cggatatcgt ccaccccgtt gcggttgccg ggcatgaagc gctggtcacc ctgcgccagc
      421 acgcgggcat aatggtcctc gggtttcgcc tgcagccata cggtgaagca attctgcagc
      481 agcaggccga aggtcgcggt gtcgccgacc aggccgccgg ccgtggcgat gacgcaggcc
      541 ttgttgtcgc gcagcgtctc ctccagcgcc tggcgctcat agcggcgata ggcgttggag
      601 ccgtacaaag cctggatctc gatcggcgcg cagccggcga tgcgggtgat ttcggcgcgc
      661 aattcgatga agggcacgcc cagctcgttt gccgccatct gccccagcgt ggatttgccg
      721 gcgccgcgca ggcccacgag cgcgatgcgg tcgcgccgcc cctgggccgc gctgctgtcg
      781 ccgaataatt cggacagcgc ctggcgcgcg cgcgccagct cggctggcgt gcggtcatgc
      841 agcaggcggc gcaccatcag ccattccggc gagctggtgg tctcgtcccc cagcaattcc
      901 gccagcgagc agcccagcgc ctgcgccacc tgagccagta ccaggatcga cacgtttcct
      961 gtgccggatt cgagattcgc cagatgccgc tcggacacct gcgcctcctc ggccaggata
     1021 cggcgcgtca tgccgcgccg ggcgcgggcg agttttaccc tctggcccag attgggcagc
     1081 agttggttgt catcggcgag tgtcatttgt ggttcaattc ggaagccatt gaggggcgtt
     1141 accaactttt ggccattgaa cataggggga agggtggaaa aattgcacta tgttgcactg
     1201 tcgctctaga atctaatgca tattgcagca aggcagaggc ctcacggccg cattgcgggc
     1261 cgctcttggc aaggccgggg ggcaatgcca tctcatggcg catgacagaa cattatgatc
     1321 cggtcggctg gcatggcacg accattcttt cagtccggcg tggcgaccag gtggtggtcg
     1381 cgggcgacgg tcaggtatct ctcggtaaca cagtggtcaa gggcaatgcc cgcaaggtgc
     1441 ggcgcattgg cggcggcagc gtgctggccg gctttgccgg cgccacggct gatgccttca
     1501 ctctgcttga gcggctggag agcaagctcg agcgcttccc caaccagcta gagcgcgcct
     1561 gcgtggaact tgccaaggat tggcgcacgg accgctatct gcgccggctt gaggcgatgc
     1621 tcatcgtcgc cgacaaggag cgcggcttca ccgtcaccgg caatggcgac gtgttggagc
     1681 ctaacgatgg catcatcgcc atcggctccg gcggcaatta cgccctctcc gccgcgcgcg
     1741 cgctcatcac cgtgcccgac ttgtcggccg aggagatcgc ccgccgcgcg atgaagatcg
     1801 ccgccgatat ctgtatctac accaacgaga atctgatcgt agaaacgcta taatggacgc
     1861 acctgtttat tccccccgcg agattgtctc cgagcttgac cgtttcatca tcggccagaa
     1921 cgacgccaag cgcgccgtgg ccatcgcctt gcgcaaccgc tggcgccgcc agcagctccc
     1981 tgaggagatg cgcgacgagg tggtgccgaa gaacatcctc atgatcggcc ccaccggctg
     2041 cggcaagacc gagatcgcgc gccgcctggc gaagctcgcc caggcgcctt tcctcaaggt
     2101 cgaggccacg aaattcaccg aggtcggcta tgtcggccgc gacgtggaga gcatcgtgcg
     2161 cgacctggtc gaaacctcca tcaccatgct gcgcgagcag aaccgcaagg gcgtcgaagc
     2221 caaggccgag ctcgccgccg aggagcgcct catcaccgct ttggtgggcg aaggcgcatc
     2281 cgccgacacg cgggtaaaat tccgccgcat gctgcgcgcg ggcgagcttg aggacaagga
     2341 gatcgaaatc tccctgtccg atggcggcac gcccatcggc gtgatcgatt tgcccaacat
     2401 gccgcagggc ggctcgatca atatcggcga catgatgaaa ggcatgtttg gccgccccac
     2461 gaccaggaag aaaatgcacg tccccgacgc gcgccgcgct ttggcgcgcg aagaggccga
     2521 caagctgctg gacaccgaag cgctaaccaa ggacgcgctg agccatgccg agcagaacgg
     2581 catcgtcttc ctcgatgaaa tcgataaaat ctgcgctcac tccgagggcg ggttccgcgg
     2641 cgccgatgtc tcgcgcgaag gcgtgcagcg cgatctgctg ccgctcatcg aaggcaccac
     2701 ggtctcgacc aaatacggcc cggtgaagac ggattatatc ctcttcattg cttccggcgc
     2761 cttccatgtc gccaagccgg ccgatctgct gcccgagttg caggggcgcc tgcccatccg
     2821 cgtcgagctg aattcgctct cgcgcgatga tttcaagcgc atcctcacgg agacggaaca
     2881 ttccttgctg aagcaatcca ccgccctgct cggcactgag aatgtgacgc tgaatttcgc
     2941 cgatgacgcg gtcgacgcca tcgctggcct cgccttcgac atcaatgacc gcgtcgagaa
     3001 tatcggcgcg cgccgcctcg ccacggtcat tgagcgtctg ctggaggaga tcagcttcac
     3061 cgcctccgac cgttccggcg acacgctgac gatcgacgcg gcctatgtga atgagcgcgt
     3121 cgccccgctg gcggccaagg gcgacctgtc gcgcttcatt ctgtaagctg atgtaacgtc
     3181 gccggagcgt tcaagcctcg caatgaacgc tccggcttta ttcccggccg ccggcacaat
     3241 ttgcgcggct ttggagcttt ccggaattta agctaagcct gccgacatga accatcggtt
     3301 agcaggctta tcggcggctt tggtggcgct cgcggcgctg gccgcggctt attacgcgca
     3361 atatgtcctg cacctcaccc cgtgcgagct atgtttgtgg gagcgctggc cctaccgtgt
     3421 cgtggtggtg ctggggttgc tggccatgat gggccggccg cgcaccgcgc gctggctgct
     3481 tggcgtggcc gggttcgtca tgctcgccaa tgtagccatt gccgggctgc atgccggagt
     3541 ggagttcaac tggtggaatt cccccctgcc ggaatgcaat ggcgcgctgg tgccggggca
     3601 ggctttgccg ctcacccccg ccacgccgtg cgaccggccg gtctatccca tcaccctcgt
     3661 cccaatctcc atggcgcaga tggattttgc cctctccgcc ctgt
//
LOCUS       DASQCV010000073         2928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3163536, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000073 DASQCV010000000
VERSION     DASQCV010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3163536"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1284
                     /locus_tag="VEQ16_01020"
     CDS             <1..1284
                     /locus_tag="VEQ16_01020"
                     /inference="COORDINATES: protein motif:HMM:TIGR00797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HYP62433.1"
                     /translation="ILQSINASINTAWIGQLLGPRALTASANANAVLFFLLSISFGLS
                     MAATILIGQSFGARDMVQCKRVMGTSSMFFSIASTALAALGFLIAPIILRGMQTPPDA
                     EPLASAYLRIIFLGVPAIFFFNFMMMALRGAGDSRTPFYFMLIGAAFDIGLNPLLIRG
                     LGPVPALGIAGSALATTIAQWSALLLLIAWLYLKNHPLCLRRADAGYFRIDRVILRSL
                     LTKGIPMGLQVVVVSSAMILMISLVNRFGSLTVAAYGACFQLWNYIQMPTFAVGSAVS
                     SMAAQNVGAGRWDRVNRVTMVAVIYNVLLTGTLVSAVTLFDHAAFWLFLGGNEEAIEI
                     AKHMHLIASWSFILFGVAFMMASTVRATGAVMVPLLILIVAIWGVRLPVAAFLSHTGV
                     DGVLWGFPAGSVASVLLTAAYYRYGGWRRAKMLED"
     gene            complement(1571..2086)
                     /locus_tag="VEQ16_01025"
     CDS             complement(1571..2086)
                     /locus_tag="VEQ16_01025"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014189731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HYP62434.1"
                     /translation="MNDLYLDQMDTPIGPALLVTDAEGAVRALDFADYEPRMTRLLRL
                     HYGKATPRPGAAPASVKDRLTRYFTGELDALDNIRCATGGTEFQRRVWAALRTIKPGT
                     TLSYGRLAAQLGHPLASRAVGLANGANPISIIVPCHRVIGANGTLTGYGGGLPRKQWL
                     LAHEGGADRLV"
     gene            complement(2083..>2928)
                     /locus_tag="VEQ16_01030"
     CDS             complement(2083..>2928)
                     /locus_tag="VEQ16_01030"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlkA N-terminal domain-containing protein"
                     /protein_id="HYP62435.1"
                     /translation="AMLGFLRLRAIPGVESVGANHYARSIAIGTDQGVISVRPGTGDF
                     LAVDIWFPRLSSLPAIIARIRRVFDLTADPHTINEALEQDEILAPLVAARPGLRVPGA
                     WDGFELAVRAILGQQISVTAATRLGAKMAAAYGTPLPSSLQGRVEGLTHLFPGPAELA
                     DADLTRLGIIRTRAACLSSLAQAMLADSLLLSPRASLEEAVARLISLPGIGEWTAHYI
                     AMRALREADAFPHGDIGLRRALADNNGRPSAAALLARAEAWRPWRAYAALHLWTSEPT
                     QEALQ"
BASE COUNT          431 a          915 c         1006 g          576 t
ORIGIN      
        1 atcctgcaat ccatcaacgc ctccatcaac accgcctgga tcggccagtt gcttgggccg
       61 cgcgccctca ccgccagcgc caacgccaat gccgtgctgt tcttcctgct cagcatcagc
      121 ttcggcctct ccatggcggc caccatcctc atcggccaga gttttggcgc gcgcgacatg
      181 gtgcagtgca agcgggtgat gggcacgtcc tcgatgttct tcagcatcgc ttccactgcc
      241 ttggccgcgc tcggctttct catcgcgccc atcatcctgc gcggcatgca gaccccgccg
      301 gatgccgagc cgctggcctc ggcctatctg cgcatcatct tcctcggtgt gccggccatc
      361 ttcttcttca atttcatgat gatggcgctg cgcggggcgg gcgattcgcg caccccgttc
      421 tatttcatgc ttatcggcgc ggcgttcgat atcgggctca acccgctgct gatacgcggt
      481 ctcggcccgg tgccggcgct gggcatcgcc ggctcggcgc tggccaccac catcgcgcaa
      541 tggagtgcgc tgctgctgct cattgcctgg ctgtatctga aaaaccaccc gctctgcctg
      601 cgccgcgccg atgctggtta tttccgaatc gaccgcgtca ttctgcgcag cctgctcacc
      661 aagggcatcc ccatggggct gcaggtggtg gtggtgtcgt cggcgatgat cctgatgatc
      721 agcctggtca accgcttcgg ctcgctcacc gtggcggcct atggcgcctg tttccagctc
      781 tggaactata tccagatgcc gaccttcgcg gtgggcagcg ccgtctcctc gatggcggcg
      841 cagaatgtcg gggccggacg ctgggatagg gtcaatcgcg tcactatggt ggctgtgatc
      901 tataatgtgc tgcttaccgg cacgctggtc agcgccgtca ctttgttcga ccatgccgcc
      961 ttctggctct tccttggcgg caatgaagag gccatcgaga ttgccaaaca catgcatctc
     1021 atcgcctcct ggtcattcat tctgttcggc gtcgccttca tgatggcaag cacggtgcgg
     1081 gccaccgggg cggtgatggt gccgctgctc atccttatcg tcgccatctg gggcgtgcgc
     1141 ctgccggtgg cggcgtttct ctcccatacc ggggtggatg gcgtgctctg gggcttcccc
     1201 gccggctccg tcgcctcagt gctgctgacc gcagcctatt accgctacgg cggctggcgc
     1261 cgtgcgaaga tgctggagga ctgaggggct ggtttaaagc cctgtggtgg ggggagtgcc
     1321 cgattttgga aggaagtaag gccaggggct ctgcccctgg accccgctgg gcctgaggcc
     1381 cagaccccat tagcttttaa ggtttgaaaa agggcctgcc accaagccgt ttcgcggcac
     1441 ggaggcaggc cctttttcaa accttcttaa aaagttacgg gggtctgggg cctcaggccc
     1501 cagcgggtcc agggcggagc cctggcctta cttgctttcc aagaccggat atttccccca
     1561 cagcggggtt ttaaaccagc ctgtcagcgc ccccttcatg tgccagcagc cattgcttgc
     1621 ggggcaggcc gccgccgtag ccggtgagtg tgccgttggc gccgatgacg cggtggcagg
     1681 gcacgatgat gctgatgggg ttggcgccgt tggccaggcc cacggcgcgt gaggcaagtg
     1741 ggtggccgag ttgggcggcg aggcggccgt agcttagcgt ggtgccgggt tttatggtgc
     1801 gcagggcggc ccagacgcgg cgttggaatt cggtgccgcc ggtggcgcag cggatattgt
     1861 ccaacgcgtc cagttcgccg gtgaagtagc gtgtgaggcg gtctttcacc gaagcgggcg
     1921 cggcgccggg gcgcggcgtg gccttgccgt aatgcaggcg cagcagccgt gtcatgcggg
     1981 gttcgtaatc ggcgaaatcg agggcccgca cggcgccttc cgcgtccgtg acgagcagag
     2041 cggggccgat gggggtgtcc atctggtcca ggtagagatc gttcattgca acgcctcctg
     2101 cgttggttcg gatgtccaga gatgcagggc cgcataggcc cgccaggggc gccaggcttc
     2161 ggcccgggcc agcagggcgg cggcgctggg gcggccgtta ttgtccgcca aagcgcgccg
     2221 cagcccgata tcgccgtggg ggaaggcatc tgcttcgcgc agtgcccgca tggcgatgta
     2281 gtgcgctgtc cattcgccga tgccgggcag ggagatgagc cgtgccacgg cctcctccag
     2341 cgaggcgcgg gggctgagca gcagcgagtc agccagcatg gcttgcgcca gggaggataa
     2401 gcatgccgcc ctggtgcgga tgatgccgag tcgggtgagg tcggcgtccg ccagttccgc
     2461 cggaccgggg aagagatgcg ttagaccttc tacccgcccc tgcagggaag agggcagtgg
     2521 tgtgccatag gcggcagcca tttttgcgcc gagcctggtt gcggcagtca cgctgatctg
     2581 ctggccgagg atggcgcgca cggccaactc gaacccgtcc catgctcccg gcacgcgcag
     2641 gcctggccgt gccgcgacca ggggggccag gatttcgtcc tgctccagag cttcattgat
     2701 ggtgtgcggg tcggccgtga ggtcgaacac gcgcctgatg cgggctatga tggcaggcaa
     2761 ggaggagagg cggggaaacc agatgtccac ggcgaggaaa tcgcccgtgc cggggcggac
     2821 cgagattacg ccctggtccg tgccgatggc gatgctgcgg gcgtaatggt tcgcgcctac
     2881 gctttccacg ccggggatgg cgcgcaggcg gaggaagccg agcatcgc
//
LOCUS       DASQCV010000074         3902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2003280, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000074 DASQCV010000000
VERSION     DASQCV010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3902
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2003280"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1112)
                     /locus_tag="VEQ16_01035"
     CDS             complement(<1..1112)
                     /locus_tag="VEQ16_01035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HYP62436.1"
                     /translation="MSALSDAAQALLGAAKRAGAEVAEVVLHDGASVSVQRRLGKIEE
                     TERAETREIGLRVFIGRSGASVSASSIDPASFNRLAEQAVSMARVVPEDPYAEIPPAP
                     APLDAGFLQLDDPVEPKADVLIARAAVAEEAALAVPGITNSEGASSSWSRTVSLLATS
                     HGFLGEYARSYHGVSVTAIAGTGVDMQRDYDYSSSLHGSDLDDPAQLGRNAAARALAR
                     LNPKRPGTAKLPILFDPRVAGSILGHFSSAISGASIARGTSFLKDALGQAVFAPGIVI
                     TDEPLRVRGRRSRPFDREGQTVKQMNFIEGGALTSWILDTRSANQLGLKTTGHAGGLS
                     NFYMTPDRLSQAELMADIGEGLFVTEMIGMGVNGLTG"
     gene            complement(1109..2374)
                     /locus_tag="VEQ16_01040"
     CDS             complement(1109..2374)
                     /locus_tag="VEQ16_01040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019088363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HYP62437.1"
                     /translation="MSEQVSITTLASGLTVLTERMERVETVSFGAYVGAGTRHETAAE
                     NGVAHFLEHMAFKGTTTRSAVDIAEAIENVGGHINAYTSREQTAYYVKLLKEDLALGA
                     DIIGDILCNSTFEPDEVERERGVILQEIGQANDTPDDIVFDHFQSAAYPAQPMGRPVL
                     GTEQIIRNMKRETLHGFMQAHYTPQNMVLAASGNLHHHQVVELAERHFGKLPRAERTA
                     PMPSDYMGGEYREMRDLDQAHIVLGFDAPGYGEADYYPSMLLSTILGGGMSSRLFQEI
                     REKRGLVYSIYSFTSPAQDGGLFGIYAGTGESEAAELMPVTLEELAKVQREVSEAELA
                     RARAQLKAGLLMSLESTGSRCEQLARQWQIFGRIIPVSETVQKIEAVTVDDVRAAGAK
                     IFRQKPTLASIGPVGQVPKFSAIIDRLAA"
     gene            complement(2371..3774)
                     /gene="thrC"
                     /locus_tag="VEQ16_01045"
     CDS             complement(2371..3774)
                     /gene="thrC"
                     /locus_tag="VEQ16_01045"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HYP62438.1"
                     /translation="MRYLSTRGQAPELDFAGVLLAGLANDGGLYMPAAWPRFSAAELR
                     ALRGLPYPELAARVLAPFTEGSISFAELQVMCRRAYAGFTHKAIVPLVQLDANIFALE
                     LFHGPTLAFKDMALQLVGHLFEHVLERESKKISIVGATSGDTGSAAIEAVAGRKNISI
                     TILHPAGKTSEVQRRQMTGVAADNVLNLAIDGNFDDCQAIVKSLFADGAFRAKMNLSA
                     VNSINFARIAAQIPYYVFAALNLGAPEREVAVAVPTGNFGNILAAWAAKQMGLPISRF
                     IVASNRNDILTRFLDANDMSLRAVEPSLSPSMDIGISSNFERLLFEFLHRDAAQTRHQ
                     LSAFAKEAKMPIPDAVWQDVRREFTGFRLSDEQTLAEIARLYRETGYLADPHSVIGIA
                     AAREKGPVGLPVIAAATAHPAKFPDAIEKAVGSRPPLPNHLSDLYDREERYEHAPNDW
                     KAIARTVEQRFANRNSE"
BASE COUNT          712 a         1268 c         1236 g          686 t
ORIGIN      
        1 ccggtgagcc cgttcacccc catgccgatc atttccgtca cgaacaatcc ttcgccaata
       61 tccgccatca gctccgcctg gctcaaccgg tccggcgtca tgtagaaatt ggacagcccg
      121 ccggcatggc cggtggtttt caaacccagc tggttggcgc tgcgtgtatc cagaatccag
      181 ctggtcagcg cgccgccttc gataaagttc atctgcttca ccgtctggcc ttcacggtcg
      241 aacgggcgcg agcgccggcc gcgcacgcgc aagggctcgt cggtgataac gatgcccggc
      301 gcgaacaccg cctgccccag cgcatccttc aggaaggaag tgccgcgcgc gatggaggcg
      361 ccggaaatgg cggatgaaaa atgccccagt atggagcccg cgacgcgcgg gtcgaacagg
      421 atggggagtt tcgccgtgcc tgggcgtttc gggttgagcc gtgccagtgc ccgcgcggcg
      481 gcattgcgcc caagctgtgc tggatcatcg aggtccgacc catgcagcga ggaggagtaa
      541 tcataatcgc gctgcatatc cacgcccgtt cccgcaatcg cggtgacgga gacgccatga
      601 taggagcgcg catattcgcc caaaaaccca tggctcgtgg cgagcagcga aacggtgcgc
      661 gaccaggagg aagacgcccc ttcggaattg gtgatgcccg gcacggcgag tgccgcttcc
      721 tcggcgacgg cggcgcgggc gatcagcaca tctgccttcg gctcaaccgg gtcgtccagc
      781 tgcaggaagc cggcatccag cggcgccggg gcgggcggga tttccgcgta agggtcttcc
      841 ggcaccacgc gcgccatgga aacggcctgt tcggccaggc ggttgaaact cgcagggtct
      901 atggaactgg cggaaacaga cgcgccggag cggccgatga acacgcgcag cccgatctcg
      961 cgcgtctccg cccgctcggt ctcctcgatc ttgcccagac ggcgctgcac cgagacggag
     1021 gcgccgtcat gcagcaccac ttctgccacc tccgcgccag cgcgcttcgc agcacccagg
     1081 agcgcctggg cggcgtcgga cagcgcgctc acgcggccag cctgtcgatg atggcggaga
     1141 atttcggcac ctgccccacc ggcccgatgc tggccaaggt cggcttctgg cggaagattt
     1201 tggcgcccgc cgcgcgcacg tcatccaccg tcacggcctc gattttctgc accgtctccg
     1261 agacggggat gatgcggccg aaaatctgcc attgccgcgc cagctgctcg cagcgggagc
     1321 cggtggattc caggctcatc aacagcccgg ccttcaactg cgcccgggcg cgggccagct
     1381 cggcctcgct cacctcgcgc tgcaccttcg ccagctcctc caaggtcacc ggcatcagct
     1441 cggccgcctc ggactcgccg gtgccggcat aaatcccgaa cagcccgcca tcctgcgccg
     1501 ggctggtaaa actatagatg gaatagacca gtccgcgctt ctcacggatt tcctggaaca
     1561 ggcgcgagga catgcccccg cccagaatgg tggagagcag catcgaggga taataatcag
     1621 cctcgccata gcccggcgcg tcgaacccca gcacgatatg cgcctggtcg aggtcgcgca
     1681 tctcccggta ctcgccgccc atatagtcgg aaggcatcgg cgctgtccgc tcggcgcgcg
     1741 gcagcttgcc aaaatggcgc tccgccagtt ccaccacctg atggtggtgc aggttgccgc
     1801 tcgcggcgag gaccatgttc tggggtgtgt aatgcgcctg catgaagcca tgcagcgtct
     1861 cgcgcttcat gttgcggatg atctgctccg tgcccagcac cggccgtccc atgggctggg
     1921 ccggataggc ggcggactgg aaatggtcga acacgatgtc atcaggcgtg tcgttggcct
     1981 ggccgatttc ctgcaggatg accccgcgct cgcgctccac ctcgtccggc tcgaaggttg
     2041 agttgcagag gatgtcgccg ataatatcgg cccccagcgc cagatcttcc ttgagcagct
     2101 tcacgtaata ggcggtctgc tcgcgcgagg tataggcgtt gatatgcccg cccacattct
     2161 cgatggcctc ggcgatgtcc acggcggagc gcgtcgtggt gcccttgaag gccatatgtt
     2221 ccaggaaatg cgccaccccg ttctctgcgg cggtctcatg cctggtgccg gcgcccacat
     2281 aggcgccgaa agaaaccgtc tccacccgct ccatgcgctc ggtcagcaca gtgaggccgg
     2341 aagccagggt ggtgatggaa acttgttcgc tcattcagaa ttcctgttcg caaatctctg
     2401 ctctacggtc cgcgctatgg ctttccagtc atttggagca tgctcatatc tttcctccct
     2461 gtcatatagg tcagaaagat gattggggag gggtgggcgg ctgcccacag ctttttcgat
     2521 agcatccggg aacttggctg gatgcgccgt ggccgcggcg atgacaggca ggccgaccgg
     2581 ccccttctcg cgtgcggcgg cgatgccgat gacggaatgc gggtcggcga gatagccggt
     2641 ctcgcggtaa agccgggcga tttccgccaa agtctgctcg tccgagaggc ggaagccagt
     2701 gaattcccgg cgcacatcct gccacaccgc atcggggatg ggcattttcg cttccttggc
     2761 gaaggcgctc aactggtggc gcgtctgcgc cgcatcgcgg tgcaaaaatt cgaacaaaag
     2821 ccgctcgaaa ttggagctga tgccgatatc catggaaggc gacaggctcg gctccacggc
     2881 gcgcagcgac atgtcgttgg catccaggaa gcgggtgagg atgtcgttgc ggttgcttgc
     2941 cacgatgaag cgggaaatgg gcagccccat ctgcttcgcc gcccaggcgg ccaggatatt
     3001 gccgaaattg ccggtcggca cggcaaccgc cacctcgcgc tccggcgcgc cgagattgag
     3061 cgcggcgaac acataatagg ggatctgcgc ggcaatccgg gcgaaattga tggaattcac
     3121 cgccgagagg ttcatcttcg cccggaaggc accgtccgcg aacaatgatt tcacgatggc
     3181 ctggcaatca tcgaaattgc cgtcgatggc cagattcaac acgttatccg ccgccacgcc
     3241 ggtcatctgc cggcgctgca cctcggaggt cttacccgcc gggtgcagga tggtgatgga
     3301 aatattcttc cgccccgcca ccgcctcgat ggccgccgag cccgtatcgc cggaagtggc
     3361 gccgacgatg gagatttttt tgctctcccg ctccagcaca tgctcgaaca gatgcccgac
     3421 cagctgcagc gccatgtcct tgaaggcgag ggtcggcccg tggaacagct ccagggcaaa
     3481 aatattcgca tccagctgca ccaacggcac gatggccttg tgcgtgaagc ccgcataggc
     3541 gcggcggcac atcacctgca gttcggcaaa gcttatgctc ccctcggtaa acggcgccag
     3601 cacgcgcgcc gccaattcgg ggtaaggcag cccgcgcaga gcccgcagct cggcagccga
     3661 gaagcggggc caggcggccg gcatatagag cccgccatca ttggccagcc ccgccagcag
     3721 cacaccggca aaatccagtt ccggcgcctg gccgcgggtc gagagatagc gcatcgagca
     3781 gaaatccttg atactttgcc agggcctata ctatcggagc aaagcgggca gcaatgcgtt
     3841 gagccgttgg cggccttgtg atgtcgcggc gaggcgctcc ggggtgaggg tgaggtagcc
     3901 tt
//
LOCUS       DASQCV010000075         2081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2832982, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000075 DASQCV010000000
VERSION     DASQCV010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2832982"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1095)
                     /locus_tag="VEQ16_01050"
     CDS             complement(<1..1095)
                     /locus_tag="VEQ16_01050"
                     /inference="COORDINATES: protein motif:HMM:NF024829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HYP62439.1"
                     /translation="MIPRLRQLLPKAANQGALAAADEPLPLAVLEFQSPTAAVIATPM
                     PPVARSTTHILTALVATLLVIGVTFELDQQVSGTAVLTSSAPDFSVQTFNSSSILRDV
                     NVHPGQLVRKGQVVATLDPTYVTADLTGLTQQEQNYAAQVAQLQAQESGKPYVPDPNN
                     PYGALQLQTYDQQMGQYNFSMENYQQQINQLQTQIDGYNGQAAYFRQRLGIASNVENM
                     RKKLQQLQVGSELDTEAATDDRVSMQAEMENNVSEAQAAQKQLAAVTAQMNSFAQQFK
                     AQASTQLATALNNLAQAQQDLTKAKLNSQEVYLTAPQDAVVESVAQASPGSVLQPGET
                     LLTLSPVNAPFTVEAQIDATRSGYVHVGDKV"
     gene            complement(1055..>2081)
                     /locus_tag="VEQ16_01055"
     CDS             complement(1055..>2081)
                     /locus_tag="VEQ16_01055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP62440.1"
                     /translation="YGAVTLGAFIALHSNSAFDAGSIAGFMLLGGRVAGPLVSLASVM
                     EDVQKAQASIEHVAWVLNRPNEKHALTHGLRPRFEGAIEFDDVTFKYEGSKTPALDKM
                     SFKIPAGTMLGLVGRSGSGKSTITRLLQGINRDYTGAIKIDDNDMREINLRHLRKSFG
                     MVLQDNFLFRGSVRENIIAGRPGLSFEDAVRAARLAGAEEFIERMPNGYDTFIQEGSP
                     NLSGGQKQRLAIARALVSDPKVLIMDEATSALDPESEALVNANIQRIAKGRTMVIVSH
                     RLSSLLDCDLIMVLDRGRTVDIGTHHELVERCAIYRHLWFQQNRHLAPEGFENDSSTP
                     PALTQGR"
BASE COUNT          366 a          616 c          669 g          430 t
ORIGIN      
        1 caccttgtcg ccgacatgga catagcccga tctggtggcg tcgatctgcg cctcaacggt
       61 gaagggggcg ttgaccggtg agagcgtcag cagggtttca cccggctgca gcaccgaacc
      121 cggtgaggcc tgggccacgg attctaccac agcatcctgc ggcgcggtga ggtagacctc
      181 ctggctgttc aacttggcct tggtcaaatc ctgctgtgcc tgggccagat tattcagggc
      241 cgtcgccaac tgcgtcgagg cctgcgcctt gaattgctgg gcgaagctgt tcatctgcgc
      301 ggtcacggcg gcaagctgct tttgcgcggc ctgcgcctcg gagacattat tctccatttc
      361 cgcttgcatg gaaacacggt catcggtcgc cgcctcggtg tccagctcgc tgcccacctg
      421 gagctgctgc agcttcttgc gcatattctc tacattcgaa gcaatgccga gacgctgacg
      481 gaaataagcg gcctggccgt tatagccgtc gatctgggtc tgcagctgat tgatctgctg
      541 ctggtagttc tccatcgaga aattatactg acccatttgc tggtcatagg tctgcagctg
      601 cagggcgccg taagggttgt tcggatctgg cacgtagggc ttgccactct cctgggcttg
      661 aagctgagcc acctgggcag cgtaattctg ctcctgctgt gtcagcccgg tcaggtccgc
      721 tgtgacataa gtcgggtcca gggtcgccac cacttgcccc ttacgcacga gctggccggg
      781 atgcacgttg acgtcgcgca ggatggaact gctgttgaag gtttgaacgc tgaaatccgg
      841 tgcgcttgag gtgagcacgg cggtgccact cacctgctgg tcgagttcga aggtcacccc
      901 gatcaccagc aatgtggcga ctagtgcggt caatatatgt gtggtggagc gcgccaccgg
      961 cggcatcggc gttgcgatca ccgccgccgt cggcgactgg aattccagca cggcgagcgg
     1021 caagggctcg tccgccgccg ccagcgcgcc ttgattagcg gccttgggta agagctggcg
     1081 gagtcgagga atcattctca aagccttcgg gagcgaggtg acggttttgc tggaaccaga
     1141 gatggcggta gatggcgcag cgctcgacga gctcgtggtg cgtgccgata tccaccgtgc
     1201 ggccgcgatc gagcaccatg atcaggtcac aatcgagcag ggaagagaga cggtgtgata
     1261 cgatgaccat cgtccgccct ttggcgatgc gctggatatt ggcattgacc agcgcctcgg
     1321 actcaggatc gagtgccgag gtcgcctcgt ccatgatcag cactttcggg tcggagacca
     1381 aggcgcgggc gatggccagg cgctgcttct gcccgccgga caggttgggc gagccttcct
     1441 ggatgaaggt gtcatagccg ttgggcatgc gctcgatgaa ttcctcggcg cccgcgaggc
     1501 gcgccgcgcg taccgcatcc tcgaaggaca ggcccggccg gccggcgatg atattctccc
     1561 gcaccgagcc gcggaacagg aagttgtcct gcagcaccat gccgaaactt ttgcgcagat
     1621 gccgcaggtt tatctcgcgc atgtcgttat catcaatttt gatggcgccg gtataatcgc
     1681 ggttgatgcc ctgcagcagg cgggtgatgg tggatttgcc agagcccgag cgcccgacca
     1741 gcccgagcat ggtgccggcc ggaatcttga agctcatctt gtccagcgcc ggggttttcg
     1801 acccctcata tttgaacgtc acgtcgtcga actcgatggc gccttcaaag cgtggccgca
     1861 gcccgtgtgt cagcgcatgt ttctcgttgg ggcggttgag cacccaggcc acatgctcga
     1921 ttgaggcttg agccttttgc acatcctcca tcacgctggc gaggctgacc agcggcccgg
     1981 cgacgcgccc gcccagcagc atgaagccgg cgatgctgcc ggcatcgaac gcggaatttg
     2041 aatgtaatgc gataaaggcg ccgagcgtga ccgcgccgta g
//
LOCUS       DASQCV010000076         7234 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1838567, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000076 DASQCV010000000
VERSION     DASQCV010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 7234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7234
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1838567"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1746
                     /locus_tag="VEQ16_01060"
     CDS             <1..1746
                     /locus_tag="VEQ16_01060"
                     /inference="COORDINATES: protein motif:HMM:NF012481.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase flavoprotein subunit alpha"
                     /protein_id="HYP62441.1"
                     /translation="PEETGLLALENLPGPALAADERLYLRGFMQGVAMRPEGVPELPA
                     TAPVAPERRVFLNGVLAGMFARLTPAPTLAPATAPALTILYASQTGTAEAAARAAAAR
                     LAAVAKPLNDVAPCTLAGTVLFYTSSFGDGDPPDNGARFWRALMQEPAPALGAVRFGV
                     LAFGDSAYAQFCGFGRKLEERLLALGAQKLLERAECEPGDEGMKDAWLARAEVVLGAP
                     EASVKAVLRRPSGISRNAPYRARLVANKRLNMPGSEKDTRQLIFDLGNSGLVYEPGDA
                     LGVWPQSDPADLAAFMHLAGVDGDFADRDVTRLTPALLKFYAARAPSLAAHLAGLDEA
                     GLRDFTWGRQLIDLLAAYQVQASADEWRAVLKPLAPRLYSISSSLKAHPGEVHLTINI
                     LRYQCGGRQSGGLGSRFLADRAEDAEIFVQPTSHFRLPEDDSVPVIMIGPGTGIAPFR
                     GFLQERRMRGAKGRNWLIFGEQRAACDFYYCEELEGLAREGILQRLSTAFSRDQEHKI
                     YVQDRLRAEGDILWAWLQEGAHLYVCGDAVRMARDVDAALRDIVAVHGGITGPAAGEF
                     VDSLMAQGRYLRDVY"
     gene            2004..2954
                     /locus_tag="VEQ16_01065"
     CDS             2004..2954
                     /locus_tag="VEQ16_01065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYP62442.1"
                     /translation="MRQLPSFRMSPIISVSDLRKTYKSGLIALDGVDLAVARQEIFAL
                     LGPNGAGKTTLISIICGTVGLSAGQVLVDGHDIVRDYRAARRLIGLVPQEISLDIFAT
                     VRDTVSFSRGLHGCRPDPAHIERLLRDLSLWDKRDCRVIELSGGMKRRVMIAKALSHE
                     PKILFLDEPTAGVDVNLRRDMWALVRGLREKGVTVILTTHYIEEAEEMADRVGVIAQG
                     RLLLVEETAALMRKLGKRRLSLVLQQPLAAIPAELAPWNPELEDDGRVLSYNFDANAE
                     HTGIPELLRCLGGLGIDFRDLDTSRSSLEDIFVSLVEPAP"
     gene            2951..3727
                     /locus_tag="VEQ16_01070"
     CDS             2951..3727
                     /locus_tag="VEQ16_01070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP62443.1"
                     /translation="MSAGWPNFAGMWTIYRAEMARMRRTIWQSVATPVVTTVLYFVVF
                     GGAIGSRIQHVGGVGYGSFIVPGLIMLTLLTQSIGNASIGIYFPIFTKTVYEILAAPL
                     SAMETVFAYVGAAATKSVLLALIILGTATFFTQLHVLHPFWMVAFMLLTSVAFSLFGF
                     IIGIWAQNFEQLAIIPALVVTPLTFLGGAFYSIDMLPQPWRTVNLLNPVVYLVSGFRW
                     SFFGVGDVGVGLSLACTGIFMAACLVAIWWIFRTGYRLKP"
     gene            complement(3800..4522)
                     /gene="hutC"
                     /locus_tag="VEQ16_01075"
     CDS             complement(3800..4522)
                     /gene="hutC"
                     /locus_tag="VEQ16_01075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011252715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine utilization repressor"
                     /protein_id="HYP62444.1"
                     /translation="MDKPPKLYEQVKQYLRDGIAAGTWSEGGRIPSEFELMERLGASR
                     MTVHRALREMSAEGLLLRIQGVGSFVQRQKPRSALLEIHDIAEDITARGHTHRAVVLC
                     LEARRADSALAEDFRLSPARKINYSEIVHFEDDVPVQLEERFISPDFAPNYLRQDFTR
                     MTTNRYLLSITPPDELEHVIHAVAPDERVQKRLRIGPREPCLRLLRRTWINTKLVTFS
                     ILTHPGERYSLGSRYRLGDTPR"
     gene            complement(4525..5817)
                     /locus_tag="VEQ16_01080"
     CDS             complement(4525..5817)
                     /locus_tag="VEQ16_01080"
                     /EC_number="3.5.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamate deiminase"
                     /protein_id="HYP62445.1"
                     /translation="MDETLIFQHALLPDGWARDVRLTLSGGLISKIETGIANGRDIAL
                     PGMPNLHSHAFQRAMAGHAEKRGAAQDSFWTWRELMYKLALSMQPEDVETAATLTFIE
                     MLEGGFTSVAEFHYLHHAPDGTSYADIGEMAARLVSAAQTAGIELLLLPVFYAHAGFG
                     GTRLHNEQRRFGNTLESYAKLYERCAQLAPSGIAPHSLRAATIEELSHLSALAGTRPF
                     HIHIAEQAAEVEACLAFSGERPVEYLLRRAPVGRNWCLVHATHVTPQELAGITASGAV
                     AGLCPITEANLGDGIFPAYDFTGTFGIGSDSNVLIDAAQELRMLEYSQRLATRQRNVM
                     ATIAIQATATALYMRAVAGGAQALGIGGGLTPGAPASFVTMAGDDPDIALAQSVFSSR
                     ASMVRDVWVRGHRVVRDGRHELARTARARFDAMLSKLV"
     gene            5929..7068
                     /gene="hutI"
                     /locus_tag="VEQ16_01085"
     CDS             5929..7068
                     /gene="hutI"
                     /locus_tag="VEQ16_01085"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050480 - imidazolonepropionase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HYP62446.1"
                     /translation="MDPALPGLGIVEKGMVAESGGRIVYAGPETGIEADEIVDCAGRW
                     ISPGLIDCHTHLVYGGDRSGEFEARLEGASYEEIARAGGGIAATVKATRAATEDELLS
                     GAKARLRALLGEGVTTVEVKSGYGLSAGFEYKLLRVIHALGDDVDISSTFLGAHALPP
                     DMARADYVALLCDEMIPRIAAEGLADAVDGFCETIAFSPEEIARVFAAARARGLPVKL
                     HADQLSNLHGAALAAQFGALSADHLEYTDEAGVCAMADAGTVAVLLPGAFYTLRETKL
                     PPVETLRAHGVRMAIATDLNPGTSPLNSLLLAANMAATIFRLTVTECLLGITRNAAAA
                     LGRADVGVLKAGAKCHLAIWDIERPAELVYKIGYNPLHKRIWSAA"
     gene            7065..>7234
                     /locus_tag="VEQ16_01090"
     CDS             7065..>7234
                     /locus_tag="VEQ16_01090"
                     /inference="COORDINATES: protein motif:HMM:NF012447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid lyase"
                     /protein_id="HYP62447.1"
                     /translation="MKFTPGNVRLVQWRAIYRGAGLVLDETCLPAIAAGAEAVEEILA
                     RGEPVYGINTGFG"
BASE COUNT         1278 a         2051 c         2397 g         1508 t
ORIGIN      
        1 ccggaggaaa ctggcctgct ggcgcttgag aatttgcccg gtccggcctt ggcggcggat
       61 gaaaggctct atctgcgcgg attcatgcag ggtgtggcga tgcgccccga gggtgtgccg
      121 gaactgcccg caaccgcccc agtggcaccg gagcggcgtg tgtttttgaa cggcgtattg
      181 gccgggatgt tcgcccgcct gacgccagcc cccacgctgg cacccgccac ggcgccggcc
      241 ttgaccattc tctatgcctc gcagaccggc acggccgagg cggcggcgcg tgcggcggca
      301 gcgcgcctag cggccgtggc aaagccgttg aatgacgttg cgccctgcac gttggccggc
      361 acggtgctgt tctacaccag cagctttggc gatggcgatc cgccggataa tggcgcgcgc
      421 ttctggcggg cgttaatgca agaaccggcg ccggctttgg gcgcggtacg atttggcgtg
      481 ctggcctttg gcgattctgc ctatgcgcaa ttttgcggtt ttgggcgcaa gctggaggag
      541 cggctgttgg cgctgggggc gcagaaattg ctcgagcgcg ccgagtgcga accgggcgac
      601 gagggcatga aggatgcgtg gcttgcgcgt gccgaagtgg tcctgggcgc acccgaggcc
      661 tccgttaaag ccgtcctgcg gcggcctagt ggtatctccc gcaatgcgcc ttacagggcg
      721 cgcctcgtcg ccaataaacg actgaatatg ccgggctcgg agaaggacac gcggcagctc
      781 atttttgatt tgggcaactc cgggcttgtc tatgaaccag gtgacgcctt gggtgtatgg
      841 ccgcaaagtg atcccgcgga tctcgccgct ttcatgcacc tagccggagt ggacggtgat
      901 ttcgcggacc gggatgtgac gcgtctgacc ccggcgctgc tgaaattcta tgccgcgcgg
      961 gcgccgtctc tggcggcgca tctggccggg cttgatgagg cggggctgcg cgattttact
     1021 tgggggcggc agctcatcga tctgctggcg gcctaccagg tgcaggcttc ggcggatgag
     1081 tggcgtgccg ttctcaagcc gctggcgcca cggctctatt ccatttcgtc atcgttgaag
     1141 gcgcaccccg gcgaggtgca tctcaccatc aatattctgc gttaccaatg tggggggcgg
     1201 cagagtggcg ggctggggtc acgttttctg gcggaccgtg ccgaagatgc agaaattttt
     1261 gtgcagccga cctcacattt ccgcctgccg gaggatgatt ccgtgccggt gatcatgatt
     1321 ggcccgggta caggcatcgc accgtttcgc ggctttttac aggagcggcg gatgcgcggt
     1381 gccaaggggc gcaactggtt gattttcggt gagcagcgcg cggcgtgcga cttttactac
     1441 tgcgaggaac tcgaaggctt ggcccgagaa gggatattgc agcgtctctc caccgctttt
     1501 tcacgggacc aggagcataa aatttacgtc caggaccggc tgcgagcgga gggggacatc
     1561 ctatgggcct ggttgcagga gggtgcgcat ctctatgtat gtggcgatgc agtgcgcatg
     1621 gcgcgggatg tggatgcagc gttgcgagac atcgttgcgg tacatggtgg cattacgggg
     1681 ccggcggcgg gtgaatttgt cgattctctc atggcgcagg ggcggtattt gcgcgacgtg
     1741 tattaatgga aggcagatat cccccgcttg atggaacgcc agccctgtgg gctaaatctt
     1801 ggtgagtgcg attaactatt tgaaataata aggttttatg agaattgacg cggcgctgag
     1861 atgggctaac ggcttttgtt ctgatccgtc cgaaaatata gaaaacaaaa tcaaggctag
     1921 tccagccgcg aggggcgtca catttccagt aactggtcgt tgagtggttg aaccgtcttg
     1981 cgaaagtaaa gaagcttcct attttgaggc agcttccgag ttttcgcatg tcccccatca
     2041 tttccgtctc tgatcttcgc aaaacctata aatccggcct tattgcgctt gacggcgtcg
     2101 atcttgcggt tgcgcggcag gagatttttg ccttgctcgg ccccaacggc gccggcaaga
     2161 cgacgcttat tagtattatc tgcggcacag ttggcctcag tgcgggccag gtgttggtgg
     2221 acggacatga cattgtccgg gactaccgcg ccgcgcggcg cctgattggg ctggtgccgc
     2281 aggagatatc gctcgacatt tttgccacgg tccgggacac agtcagtttt agccgcggat
     2341 tgcatggctg caggcccgac ccggcccata ttgagcgctt gttgcgcgac ttgtcgctat
     2401 gggacaagcg tgactgccgg gtgatcgaat tgtccggcgg tatgaagcgc cgggtcatga
     2461 tcgccaaggc gctcagccat gagcccaaaa ttctctttct agacgaacca acagccggcg
     2521 tggacgtcaa cctgcggcgc gacatgtggg cattggtgcg tggcctgcgg gagaaggggg
     2581 tcacagttat cctcacaact cattatatcg aggaagcgga agaaatggcc gaccgggtcg
     2641 gtgtcatcgc acagggccgc ttgctgctgg tggaggagac ggcggcgctg atgcgcaaat
     2701 tgggcaagcg ccggctctcc ttggtattgc agcagccgct tgctgccatt ccggccgaac
     2761 tggccccctg gaatccggaa ctcgaggatg acgggcgcgt gctgtcctat aatttcgatg
     2821 ccaatgcaga gcataccggc attccggaat tgctgcgctg cctgggcggg ctgggtatcg
     2881 atttcaggga tctcgacacc agccgcagct cgctggagga tattttcgtc agcctcgtgg
     2941 agccggcgcc gtgagcgctg gctggccgaa ttttgccggc atgtggacga tctaccgggc
     3001 ggagatggcg cgcatgcgcc gcaccatctg gcagagtgtc gcgacacccg tcgttactac
     3061 ggtgctatat ttcgtggtct ttggcggcgc catcggctcg cgcatccagc atgttggcgg
     3121 ggtcggttat ggctctttca ttgttcccgg cctcatcatg ctcacgctgc tcacccaaag
     3181 cataggcaac gcctcgatcg gtatctattt tccgattttc acgaagaccg tctatgaaat
     3241 ccttgccgcg ccactctccg ccatggaaac cgtgtttgcc tatgtcgggg cggcggcgac
     3301 caagtcggtc ctactggcct tgattatcct tggcacggcg accttcttca cgcagctaca
     3361 tgttttgcac cccttctgga tggtcgcatt catgttgctc acttcggttg ccttcagcct
     3421 gtttggcttc atcatcggca tctgggcaca gaatttcgag cagcttgcca tcatccctgc
     3481 tttggtggtg actccgctca ccttcctggg cggcgctttt tactcgatcg acatgctgcc
     3541 gcagccctgg cggacggtga atttgctcaa ccctgttgtc tacctcgtga gcggcttccg
     3601 ttggagcttt tttggcgtcg gagatgtcgg ggtagggctc agcctcgctt gcacgggcat
     3661 cttcatggca gcctgcctgg tcgcaatctg gtggattttc cggacaggct atcggttgaa
     3721 gccgtagatg agcaaacggg cggcctgata cctgggccgc ttggtacccg gaacaataaa
     3781 gcgccgcgcg gggccggttc taccgagggg tgtcacccaa gcgatagcgg ctgccgagac
     3841 tgtagcgctc ccctggatga gtgaggatcg agaaggtgac cagcttcgtg ttgatccatg
     3901 tacggcgcag caggcgcaag cacggctccc gcggaccgat gcgaagccgc ttctgcacgc
     3961 gctcgtcagg ggcaacagca tgaatgacat gctccagctc atccggcggc gtgatgctca
     4021 gtaaatagcg gttggtcgtc atgcgcgtga aatcctggcg cagataattg ggggcgaaat
     4081 ccggcgagat gaaacgctcc tccagctgga cgggtacgtc gtcctcgaaa tgaacgatct
     4141 cggaataatt aatttttcta gcgggcgaca agcggaaatc ctctgccagg gctgaatcgg
     4201 cgcggcgcgc ttccaggcat agtacgaccg cccggtgtgt gtggccgcgc gcggttatgt
     4261 cttctgcgat atcgtggatt tccagcaatg ccgagcgtgg tttctgccgc tgcacgaaac
     4321 tgccgacgcc ctggatgcgc aggagcagcc cctcggccga catttcccgc aaggcgcgat
     4381 gcactgtcat gcgcgaggcg ccgagccttt ccatcaactc gaattcggac gggattctgc
     4441 cgccctcgct ccaggtgccg gcggcaatgc cgtcgcgcag atattgcttc acctgttcat
     4501 agagttttgg cggtttgtcc atgctcagac gagcttcgag agcatggcgt caaagcgggc
     4561 gcgggcggtg cgggcaagct cgtgccgccc gtcccgcacc acgcggtgcc cacgtaccca
     4621 gacatcgcgg accatggagg cgcggctgga gaaaacggat tgggcgaggg cgatgtccgg
     4681 atcatctccc gccatagtga cgaaactcgc tggcgcgccc ggcgtgagac ctccgccgat
     4741 gcctagcgcc tgcgcgccgc ccgctacggc gcgcatgtag agcgccgtgg ccgtagcctg
     4801 gatggcgatt gtggccatca cattgcgctg gcgcgtggcc agccgctgcg aatattccaa
     4861 catccgcagc tcctgcgccg cgtcgatgag cacgttggag tccgagccga tgccgaacgt
     4921 gcctgtgaag tcataggcag gaaaaatgcc gtcgcccaga ttggcctcgg tgatggggca
     4981 gaggccggcc accgcaccgc tggcggtgat gccagcaagc tcctgcggcg tgacatgggt
     5041 ggcatggacc agacaccaat tgcggccaac cggggcgcgg cgcagcagat actccaccgg
     5101 gcgctcgccg gagaaggcga ggcaggcttc gacctcggca gcctgctccg cgatatgaat
     5161 atgaaaaggc cgcgtaccgg ccaaggcgga aagatggctc aactcctcga ttgtcgcggc
     5221 gcgcagcgaa tgcggcgcga taccggaggg ggcaagctgg gcgcagcgtt catagagttt
     5281 tgcataggac tcaagcgtat tgccgaagcg gcgctgctcg ttatgcagcc ttgtgccgcc
     5341 gaacccggca tgggcgtaga agacgggaag cagcagcaac tcgatccctg cggtctgtgc
     5401 ggccgagacg aggcgcgcgg ccatttcgcc aatatcggca taggacgttc cgtccggcgc
     5461 gtgatggaga taatgaaatt ccgcgacgga cgtgaagccg ccctccagca tctcgatgaa
     5521 ggtaagcgtt gcggctgttt ccacatcttc gggctgcatg gacagagcga gcttgtacat
     5581 caattcacgc caggtccaga aactatcctg cgccgcgcca cgtttttcgg cgtggccggc
     5641 catggcgcgt tgaaaggcgt ggctgtgcag attcggcatg cccggcaggg caatgtcccg
     5701 cccgtttgca atgcctgtct cgattttgct gatcagcccg ccggataaag tgagcctcac
     5761 gtcccgcgcc cagccgtccg gaagcagcgc atgttggaaa atgagcgtct catccactgg
     5821 acaggtcctc cttgggctcc taattgtata tacaactagc gacgatccaa gcaaggtgcc
     5881 atgatgcagc gtgcagttcg cctttttcgt aatgccaggc tgatgacgat ggaccccgcg
     5941 ctgccggggc tcgggattgt ggagaagggc atggtggcgg aatccggcgg gcggattgtc
     6001 tatgccgggc ctgaaacggg gatcgaggcg gacgagattg tggattgcgc ggggcgctgg
     6061 atatcccccg ggctgatcga ttgtcatacg catctcgtct atggcggcga ccggtccggc
     6121 gaattcgagg cgcggctgga aggggcgagc tatgaagaga tcgcgcgcgc cgggggcggt
     6181 atcgccgcca cggtgaaggc gacgcgtgcc gcgacggagg atgagcttct cagcggcgcc
     6241 aaagcacgcc tgcgggcttt gctgggtgag ggcgtcacca cggtggaagt gaaatccggc
     6301 tacgggcttt ccgcagggtt cgagtataaa ttattgcgcg tcattcacgc gcttggagat
     6361 gatgtcgata tttccagcac gtttctgggc gcgcatgcgc ttccaccaga catggcacgg
     6421 gcggattatg tggcgctgtt atgcgatgag atgattccgc gcattgccgc cgaagggctg
     6481 gcggacgcgg tggacgggtt ctgcgagacg atcgcctttt ctcctgaaga gatcgcgcgg
     6541 gttttcgcgg cggcgcgggc gcgtgggctg ccggtaaaac tccatgcgga ccagctttcc
     6601 aatttgcatg gcgcggcgct ggcggcgcag ttcggggcgt tatcggcgga tcatctggaa
     6661 tatacggatg aggcgggcgt gtgcgcgatg gcggatgccg gcacggttgc cgtgcttctg
     6721 ccgggcgcct tctacacgct gcgggaaacg aaactgccac ctgtggagac cttgcgcgcg
     6781 catggcgtac ggatggccat tgccacggac ctcaatcccg gcacgtcacc gctcaattcc
     6841 ctgttgctgg ccgcgaacat ggcggcgacg atattccgtt tgacagtgac ggaatgcctg
     6901 ctcggcatca cccgcaacgc ggctgccgcc ctggggcgcg cggatgttgg tgtgctgaag
     6961 gcgggagcaa aatgccatct cgccatctgg gacatcgagc gtccggctga gctggtctac
     7021 aagattggct ataacccatt gcacaagcgt atttggagtg ccgcatgaaa ttcacgccgg
     7081 gaaatgtgag gctggtgcaa tggcgggcca tttatcgtgg cgcggggctg gtgctggacg
     7141 aaacctgcct gcccgccatt gctgcgggcg ctgaggcggt ggaagaaatc ctggcgcgcg
     7201 gcgagccggt ctacggcatc aataccgggt tcgg
//
LOCUS       DASQCV010000077         2005 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_843931, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000077 DASQCV010000000
VERSION     DASQCV010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2005
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_843931"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..328
                     /locus_tag="VEQ16_01095"
     CDS             <1..328
                     /locus_tag="VEQ16_01095"
                     /inference="COORDINATES: protein motif:HMM:NF023482.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3540 domain-containing protein"
                     /protein_id="HYP62448.1"
                     /translation="VLNATGPSIIRADGDLRLLAPNGEIVLQGVAVAANAEELRLNAQ
                     NLAVTAERATERFGSVRRFVTQIFDLDAGELRTRISGTFALLTKRLRAQAEEDVKIEG
                     QKIHLG"
     gene            339..749
                     /locus_tag="VEQ16_01100"
     CDS             339..749
                     /locus_tag="VEQ16_01100"
                     /inference="COORDINATES: protein motif:HMM:NF025047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4150 domain-containing protein"
                     /protein_id="HYP62449.1"
                     /translation="MFASTMGMGNCEAMPDVCKTPTPAGPVPIPYPNMASLAMANPGT
                     CAETVFIVNKPAATIQTIITMSEGDEAGSAGGVISGVVSGPCQFMLGSLVVMIEGCDA
                     AYMGSIVGHNGEGSANMPMGAQISPSQTVVDVAP"
     gene            complement(761..1480)
                     /locus_tag="VEQ16_01105"
     CDS             complement(761..1480)
                     /locus_tag="VEQ16_01105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HYP62450.1"
                     /translation="MTVTKSWARTDVGAVRKHNEDNLLHRPDIGLWVVADGAGGHDSG
                     EVASGLIVSSLDQLASAVSAPELLSQVRHHVGDVHLQLRDMAAARGGNSMIASTFVGL
                     IIRDGHFACLWAGDSRAYLLRHGTLSQISRDHSLVQELVDSGHLAPEDAETHPHANII
                     TRAVGADADTLELDKVIGETEPGDRFLLCSDGLTKTLSDPEIAAVLSRNGEASPADRL
                     IAAALAQDVNDNVTAVVVDVV"
     gene            complement(1487..>2005)
                     /gene="tagF"
                     /locus_tag="VEQ16_01110"
     CDS             complement(1487..>2005)
                     /gene="tagF"
                     /locus_tag="VEQ16_01110"
                     /inference="COORDINATES: protein motif:HMM:NF021393.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system-associated protein
                     TagF"
                     /protein_id="HYP62451.1"
                     /translation="PARGDFVRAGLPEDFVAPLDLWCRECLTASRAALGEDWEAAWMI
                     APIWQFWLPPGACGPRAVLGVWMPSIDRAQRHYPFMLCALAESLYDLADGAAWAAAAE
                     EAGLDCVVDDAPPERLGALLAAQMEDAPLPAPGWWTAGSEHVRPQRFDIPGLLPPIEA
                     GALLRDASPAEF"
BASE COUNT          393 a          653 c          647 g          312 t
ORIGIN      
        1 cgtgctcaac gccaccggcc cgtcaattat ccgcgcggac ggggatttgc gcctgctggc
       61 gccgaatggc gagattgtgc tgcagggggt cgcggtggcg gccaatgcgg aggaactacg
      121 gctgaatgcg caaaatctgg ccgtcacggc ggagcgggca accgagcgct tcggctccgt
      181 gcggcgcttc gtgacacaga ttttcgacct cgatgccggc gagctgcgca cgcgcatcag
      241 cggcacattc gcgctcctca ccaaaaggct gcgcgcccag gccgaggaag atgtgaaaat
      301 cgaaggccag aaaatccatc tcgggtaagg atcaaaaaat gtttgcatcg acaatgggga
      361 tgggaaattg cgaggcgatg ccggatgtct gcaagacgcc gacgccggct ggacccgtgc
      421 ccattcccta tcccaacatg gctagcctgg cgatggccaa tcccggcacc tgcgccgaga
      481 ccgtcttcat cgtcaacaag ccggcggcga caatccagac cattatcacc atgtccgagg
      541 gcgacgaggc cggctcggcg ggcggtgtca tctccggcgt ggtgagcggc ccgtgccagt
      601 tcatgctggg cagcctggtg gtgatgatcg aagggtgcga cgccgcctat atgggcagca
      661 ttgttgggca taacggcgaa ggcagcgcca acatgccgat gggcgcgcag atttcaccaa
      721 gccagaccgt cgtcgacgtc gcgccgtagg caaaacggct ttacacgacg tccaccacca
      781 ccgcggtgac attatcgttt acatcctgag ccagcgccgc ggcgatgagc cggtcggcag
      841 gcgaggcctc gccattgcgc gaaagcacgg cggcgatttc gggatcggac agagtcttgg
      901 tcagcccgtc gctgcagagc aggaaacggt cgcccggctc tgtttcgccg atcaccttgt
      961 ccagctccag cgtgtcggca tcggcgccca cggcgcgggt gatgatattg gcgtgcggat
     1021 gcgtctcggc atcctccggc gcgagatgcc cggaatcaac cagctcctgc accagtgaat
     1081 gatcgcggct gatctgcgag agcgtgccat gacgcagcag ataggcgcgt gaatccccgg
     1141 cccagaggca ggcgaaatgc ccgtcgcgga tgatcagccc gacaaaggtg gaggcaatca
     1201 tggaattgcc gccccgcgcg gcggccatgt cgcgcaattg tagatgcaca tcccccacat
     1261 ggtggcgaac ctgggacagc aattccggcg cggaaacggc actggccaat tggtcgagtg
     1321 acgagacgat caggccggac gcgacctcgc cggaatcatg cccgcccgcg ccgtctgcca
     1381 ccacccacag gccaatatcc ggccggtgca gcagattatc ctcgttatgt ttgcgcaccg
     1441 cgccgacatc ggttctggcc caggattttg taactgtcat tgccctctaa aactccgccg
     1501 gagacgcatc gcgcaacagg gcgccggcct cgatgggggg aagaagtccc ggtatgtcga
     1561 aacgctgcgg gcgtacatgt tcgctccccg cggtccacca gccgggagcg ggtagaggcg
     1621 catcttccat ctgcgccgcg agcaatgcgc cgagccgttc aggcggcgca tcatccacaa
     1681 cgcaatcaag gcccgcctct tccgccgccg cagcccatgc agcaccatcc gccagatcat
     1741 acagcgactc ggccagcgcg cagagcatga acggataatg gcgctgggcg cggtcgatgc
     1801 tcggcatcca caccccgagc acggcgcgcg gcccgcaggc gccggggggc agccagaatt
     1861 gccagatggg ggcgatcatc caggctgcct cccaatcctc gcccagagcg gcgcgcgagg
     1921 cggtgaggca ttcgcggcac cagagatcca gcggcgccac gaaatcctcg ggtagcccgg
     1981 cgcggacgaa atccccccgc gccgg
//
LOCUS       DASQCV010000078         3628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3165534, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000078 DASQCV010000000
VERSION     DASQCV010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3628
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3165534"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..293
                     /locus_tag="VEQ16_01115"
     CDS             <1..293
                     /locus_tag="VEQ16_01115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019015634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HYP62452.1"
                     /translation="YLIGTGVSAAAIWRMREALDEAGFGAVRIVASSGFGMEKCSVMA
                     DAKAPIDVVGTGSFIPEIWSETYATADIIAYDGTPRVKIGREFLLRGQKHGE"
     gene            407..2071
                     /locus_tag="VEQ16_01120"
     CDS             407..2071
                     /locus_tag="VEQ16_01120"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HYP62453.1"
                     /translation="MTETLKIAIAQMNLHLGAIDKNVAAIRAARAKAAAMGADLVVTP
                     ELSIAGYPPEDLVLKPAFVAACAAAAAELAEDTADGGPGLIVGLPWREGHKLYNAAFL
                     LEGGIIAARRAKVELPNYGVFDEKRVFDAGPCPGPIPFRGFRIGLMICEDWWLPAVSE
                     TLAETGAEMLLSINGSPFEDGKQGRRIQLAVRRVVETGLPYVFAAMVCGQDEVVFDGA
                     SFVLNGDRSLALQMPYFQEAVTLTTWTRTENGLVCTKQPLPPEPDRLELIYQAMMWGL
                     RDYVNKNGFPGVVLGLSGGIDSAISAAVAADALGPERVRAVMLPSPYTSDDSLEDAAS
                     CAQMLGIPYETIPISGPMEAFAEALAPAFGNRGPDITEENIQSRSRGLILMALSNKFG
                     PMLLTTGNKSEMSVGYATLYGDMCGGYSVLKDIYKMTVFALSRWRNTHHPVGALTQPG
                     PAMPERIITKPPSAELRPNQTDQDSLPPYEVLDAILERLIEGEKSPDEIVAEGFDRPT
                     VLRVQKLLDRAEYKRRQAPPGVKITSRAFGRDRRYPLTNGFTALLK"
     gene            2209..>3628
                     /locus_tag="VEQ16_01125"
     CDS             2209..>3628
                     /locus_tag="VEQ16_01125"
                     /inference="COORDINATES: protein motif:HMM:NF012403.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140658 - ATP-dependent chromatin
                     remodeler activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SNF2-related protein"
                     /protein_id="HYP62454.1"
                     /translation="MPVPFSAEDFDRVFDSAVLRRAQSVIALGFVKDVTLQGDTIEGA
                     VEDMDGTRRICSITPEKKGSRISFAERECTCGERGCRHLAATALAALAKFPELRKPEP
                     KSMIDTIIPARERPPGPPPPPRIRATGRRPRPAAIISPVLPEAPEAGATMLERQAVPV
                     LHLRRVHGPDEFNRPRMIDVLTLDFDYGGVRVDGASEDQFIRVRSAGQIAFIRRDNAA
                     EAEALDLLRPDGFVQMRVADGKSARGQRVLAFRGGEAAAKWHHFVAVRIPELTALGWQ
                     SHIDANFGPQLAENVGNIDVTVEDGDKGTFSLEFGIEIDGERHPLLPILEHLLARGGI
                     EAAQIVEGEIITSLDDGRVIKLPAERIKRLLAVMGDLIEAAGRTAEKALVLPMGAAAT
                     VLELEDVLTTSWTNAADIEAYVERFRGEPEIIPVEVPESFKGTLRPYQQQGVDWLQHL
                     ASHGLGGFLADDMGLGKTAQTIA"
BASE COUNT          606 a         1183 c         1172 g          667 t
ORIGIN      
        1 gttatctgat cggcaccggc gtctccgccg ccgccatctg gcgcatgcgc gaggctttgg
       61 acgaagctgg gtttggtgct gtgcgcatcg tcgcatcgtc cgggtttggc atggaaaaat
      121 gctccgtgat ggctgacgcc aaggcgccca tcgatgtggt gggaacgggc agcttcattc
      181 ctgagatttg gagtgagact tacgccacgg cggatatcat tgcctatgac ggcacgccgc
      241 gggtgaagat cgggcgtgag tttttgctgc gggggcagaa acatggggaa taagtcaggg
      301 ctccgccctg cgacccgctg ggaccgtcac gccggcggcg tgccgctgat gaaaatcggc
      361 ggccctctga gccgacggct ccggaccccc attactttgg gcaaccatga ctgaaactct
      421 caaaatcgcc atcgcgcaga tgaacctgca tctcggcgcc atcgacaaga atgtcgccgc
      481 cattcgcgcc gcgcgggcga aggcggctgc catgggggcc gatttggtgg tcaccccgga
      541 actctccatc gccggctatc cgcccgagga cctcgtgctg aaacccgctt tcgtcgcggc
      601 ctgcgcggcg gcggcggcgg aattggctga ggatacggcg gatggcgggc ccggactcat
      661 cgtcggcctg ccctggcgcg agggccacaa gctttataat gccgccttcc tgctcgaagg
      721 gggtattatc gccgcgcgcc gggcaaaagt ggagctgccc aattacggcg tgttcgacga
      781 aaaacgcgtc ttcgatgccg gtccctgccc cggccccatc ccttttcgcg gcttccgtat
      841 tgggctgatg atctgcgagg attggtggct gcccgccgtg tccgagaccc tggccgagac
      901 cggcgcggaa atgctccttt ccattaatgg ctcgcctttc gaggatggca agcagggaag
      961 gcgcatccag ctcgctgtgc ggcgcgtggt ggagaccggc ctgccttatg tcttcgccgc
     1021 catggtgtgc ggccaggacg aagtggtgtt cgatggcgcc tctttcgtgc tcaatggcga
     1081 ccgctcgctc gctttgcaga tgccctattt ccaggaagcg gtgacgctca ccacctggac
     1141 ccgcacggaa aacggcctcg tctgcacgaa gcagcctctg ccgccagagc cggaccggct
     1201 ggaactcatt tatcaggcca tgatgtgggg cctgcgcgat tatgtgaaca agaacggctt
     1261 tcccggcgtg gttctgggcc tctctggcgg catcgattcg gccatttccg ctgccgttgc
     1321 cgccgatgcg ctgggcccgg agcgggtgcg cgccgtgatg ctgccgagcc cctacacctc
     1381 cgatgactcc ctggaggatg ccgcctcctg cgcgcagatg ctcggcatcc cctacgagac
     1441 catccccatc tccgggccga tggaggcttt tgcggaggcg ctggccccgg cctttggcaa
     1501 tcgcgggccg gatattacgg aggaaaatat ccaatcccgc tcgcgcggcc ttatcctcat
     1561 ggctttgtcc aacaaattcg gccccatgct gctcactacc ggcaataaat ccgagatgtc
     1621 cgtgggttac gctaccctat atggcgatat gtgcggcggc tactcggtgc tgaaggacat
     1681 ctataagatg accgtcttcg cgctctcgcg ctggcgcaac acgcaccatc cggtgggggc
     1741 cctgacgcaa cccggcccgg ccatgcccga gcgcatcatc accaagccgc ccagcgcgga
     1801 attgcgcccc aaccagacgg accaggatag cctgccgccc tatgaggtgc tggacgccat
     1861 cctggagcgg ctgatcgagg gcgaaaaatc cccggacgag atcgtcgccg aaggcttcga
     1921 ccgccccacc gtgctgcggg tgcagaaact gctcgaccgc gcggaatata agcgccgcca
     1981 ggccccgccg ggggtcaaaa tcacctcccg cgcctttgga cgcgaccggc gctacccctt
     2041 aaccaacggc tttaccgcgc tgctcaaata acgccgtatc gcctgcgaaa aatcatctaa
     2101 ttcctctcgc cttttgcggc gaatagggta ttacaccctt tggccctgtc ctttggggcg
     2161 ttttcctcgg gcgccgcccg gatcgactgt tgggagtgag tagagccgat gccggtgccg
     2221 ttttccgccg aggattttga ccgggttttt gattccgccg tgctccgccg ggcccagagc
     2281 gtcatcgccc tgggattcgt gaaggatgtg acactgcagg gcgacacgat cgaaggcgcg
     2341 gtcgaggaca tggacggtac gcgccgcatc tgctccatca ccccggagaa gaagggcagc
     2401 cgcatctcct ttgccgagcg cgaatgcacc tgcggcgagc gcggctgccg gcatctcgcg
     2461 gcgacggccc tggccgcgct ggcgaaattc cccgagctgc gcaagcccga gccgaagagc
     2521 atgatcgaca cgatcatccc cgcgcgtgag cgcccgcccg gcccgccccc gccgccgcgc
     2581 atccgcgcca ccggccgccg tccgcgcccc gccgccatca tctcccccgt gctgcccgag
     2641 gcgcctgagg ccggcgccac aatgctggag cgccaggccg tgccggtgct gcatctgcgc
     2701 cgcgtgcatg ggccggacga gttcaaccgc ccgcgcatga tcgacgtgct gacgctggat
     2761 ttcgattatg gcggcgtgcg cgtcgatggt gcgtccgagg accagttcat ccgcgtgcgt
     2821 tccgccgggc agatcgcctt tatccgccgc gacaatgccg ccgaggctga ggccctggac
     2881 ctgctgcgcc cggatggctt cgtgcagatg cgcgtggcgg acggcaaatc cgcccgcggc
     2941 cagcgtgtgc tcgccttccg cggtggggag gcggcggcga aatggcacca tttcgtcgcg
     3001 gtgcgcatcc ccgagctgac ggcgcttggc tggcagagcc atatcgacgc taatttcggc
     3061 ccgcagctcg ctgagaatgt cggcaatatc gatgtgacgg tcgaggatgg cgacaagggc
     3121 acgttcagcc ttgaattcgg catcgagatc gatggcgagc gccatccgct tctgcccatt
     3181 cttgagcatc tgctggcacg cggcggcatc gaggcggcgc agatcgtgga gggcgagatc
     3241 atcacctcgc tcgatgatgg ccgcgtgatc aagctgccgg cggagcgcat caaacgcctg
     3301 ctcgcggtga tgggcgatct catcgaggcg gcggggcgca cggcggaaaa agcgctggta
     3361 ctgccgatgg gggcggccgc caccgtgctg gagctggagg atgtgctcac cacctcctgg
     3421 accaatgccg cggatatcga ggcttatgtc gagcgtttcc gtggcgaacc ggaaatcatt
     3481 ccggtcgagg ttccggaaag cttcaaggga acgctgcggc cttaccagca gcagggcgtg
     3541 gactggctgc agcatctggc cagccatggg ctgggcggct tccttgccga cgatatgggc
     3601 cttggcaaaa ccgcgcagac catcgcta
//
LOCUS       DASQCV010000079         1558 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2668190, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000079 DASQCV010000000
VERSION     DASQCV010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2668190"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            171..>1558
                     /locus_tag="VEQ16_01130"
     CDS             171..>1558
                     /locus_tag="VEQ16_01130"
                     /inference="COORDINATES: protein motif:HMM:NF021456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2169 domain-containing protein"
                     /protein_id="HYP62455.1"
                     /translation="MRLLHHGEAGKNANLAWFHRIAPGKGGAPVLVLCGSLLVSHDGA
                     TVAREETPRMAGHRKAPRKVAGDLLVSGRAWPNAAEYGHERAVRIAVEQGRWRKELAV
                     FGDRLWHIGVLGASITEPVPFSSIPVIYERAFGGTGYTPNPVGRGMGEGTQGDLLPNI
                     EYPDHQVQLRTHRPPPAGFGPIPASCNPRAERLGTYDAAWLVQDWPGMPQDFDPRFWN
                     EAPADQQFPEFFKGDERFTVLNMHQEKKRAELSLPGKKLRAFLQRQDGAFAEMPLALD
                     TVDIDMEAGRTELVWRGAAAVKSPRLRDIKFLFTAIEPLAAPVPLETYRAQFEARRRA
                     TYPTREEAQADREEAEAKRQKEADAAKAKLEASLKEAQDITKAANAFAAGQAAKAGKY
                     PPAKHQPAQRDAMALLAAHDPEKAALLNTKLASAAESIKAAQGEKGPVWTRERVAEAH
                     AQGASMAGVDLSG"
BASE COUNT          316 a          503 c          512 g          227 t
ORIGIN      
        1 gcggctcttg caggtgatgc tgtcgtttcc gcgactggaa ccgccacctt cgggggcgcg
       61 gttgccacag tcctaggcac gggtggtggc gcgacgacga tcagcggatc ggatgttaca
      121 attatcggcg aactcatcca gctcggctga ggcaaggcgg tagaaaactc atgcgcctgc
      181 tgcatcacgg cgaagccgga aagaacgcca atctagcctg gttccaccgc atcgcccccg
      241 gcaaaggcgg agcgccagtg ctcgtgctgt gcggctcgct gctggtctcg catgatggcg
      301 cgacggtggc tcgtgaggaa accccgcgca tggcggggca cagaaaagcc ccgcgcaagg
      361 tggcgggcga tctgctcgtc tccggccgcg cttggcccaa cgcggcggaa tatgggcatg
      421 agcgcgcggt gcgcatcgcc gtggaacaag ggcgctggcg caaggagctg gcggtgttcg
      481 gcgaccggct ctggcatatc ggtgtgcttg gcgcttccat caccgagccc gtgcccttca
      541 gctccatccc tgtcatttat gaacgcgctt tcggcggcac gggctatacg cccaacccgg
      601 tagggcgtgg catgggcgag ggcacgcaag gcgatctgct gcccaatatc gaatatcccg
      661 accatcaggt gcagctgcgc acccaccgcc caccacccgc cgggttcggc cccatccccg
      721 cctcctgcaa cccgcgcgcg gaaaggctgg gcacgtacga tgccgcctgg ctggtgcagg
      781 actggcccgg catgccacag gatttcgatc cacgcttctg gaacgaagcg cccgccgacc
      841 agcaatttcc agaattcttc aagggtgatg agcgttttac cgtgctcaac atgcaccagg
      901 agaaaaagcg ggccgagcta tccctgcccg gcaagaagct gcgcgccttc ctgcagcgcc
      961 aggatggcgc cttcgccgaa atgccactgg cgctcgacac ggttgatatc gacatggaag
     1021 ccgggcggac ggagctggta tggcgcggcg cggcggcggt gaaatcgccc cggctgcggg
     1081 acataaaatt cctctttacc gccatcgaac cactagccgc cccggtgccg ctcgaaacat
     1141 atcgggccca gttcgaggcc cgccgccgcg ccacctaccc cacgcgcgaa gaggcgcagg
     1201 cggacaggga agaggcggag gcaaaacggc agaaagaagc cgatgcggcc aaagccaagc
     1261 tagaagccag cctgaaagag gcccaggaca tcaccaaggc ggccaacgca tttgccgccg
     1321 ggcaggccgc caaggccgga aaatatccgc cggcgaaaca ccagccggcg cagcgcgacg
     1381 ccatggcgct gctcgccgcg catgacccgg aaaaagccgc gctgctcaac acgaaattgg
     1441 cgagcgcggc ggaaagcata aaagcagcgc aaggggaaaa aggcccggtt tggacgcgtg
     1501 aacgcgtggc cgaagctcat gcgcaaggcg ccagtatggc gggggttgat ctttcagg
//
LOCUS       DASQCV010000080         1923 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_346663, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000080 DASQCV010000000
VERSION     DASQCV010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1923
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346663"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..294
                     /locus_tag="VEQ16_01135"
     CDS             <1..294
                     /locus_tag="VEQ16_01135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62456.1"
                     /translation="ALLFPPTATFFTFLGDPVNEAITGTVAGPGSIKVAEVSLLSPAQ
                     LFALQPASFPLFDCNGSHYLPSTFSRYVPADFSYSLAAECLMARTSGIGYSPV"
     gene            complement(573..1562)
                     /locus_tag="VEQ16_01140"
     CDS             complement(573..1562)
                     /locus_tag="VEQ16_01140"
                     /inference="COORDINATES: protein motif:HMM:NF024872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYP62457.1"
                     /translation="MKAAAASPAEVVLSLGQLLEQQPAAAPPCLVESALLPPQGILFV
                     GGEPKVGKSLLVANLALSLAAGVDRIGFPIPAARRVLVCQFELPTAQFVSRLASMRRA
                     LGSAADERLLVDTRAAGHLLSATQGLGHFLAAAKAAAAEVIVLDPLYSTHDQDENDTR
                     AMASLCQSLLRLRDASGAALIVVHHVRKSIGRHEIGSAFRGSSALHAVGDSYLLLTRP
                     SPQLATIELRFQFRYAAAQPPRLLELNPQTLWFSSTASSSTASPAAPRRKVEKTDVTR
                     AIANIGEQVHYTQLRGEIVNLTECSKRTAQLAISDACREGWIEQANGQYRLPL"
     gene            complement(1559..>1923)
                     /locus_tag="VEQ16_01145"
     CDS             complement(1559..>1923)
                     /locus_tag="VEQ16_01145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62458.1"
                     /translation="NFDMDASRYLTLLLVGQPLLRRTLSLQMHEPLRQRIAVQYHLEG
                     LSREELDAYLAHQLKAAGVTQPLFDDTARQALYQATKGILRKVNKLALTALRIAAARK
                     ASLVQEAILLDATSEALL"
BASE COUNT          364 a          588 c          626 g          345 t
ORIGIN      
        1 gcattgttgt ttccacccac ggctaccttc tttacgtttc ttggagatcc agtcaatgaa
       61 gcgattacag gcactgttgc agggccaggt tctatcaagg tggcggaagt ttcgttgctc
      121 agcccggcac agttgttcgc cctccaaccg gcgagcttcc cactgttcga ctgtaacggg
      181 tcacattatt tgccctcgac cttctcacgc tatgtcccgg ccgacttctc gtattcactc
      241 gctgccgagt gcctgatggc aagaacgagc gggataggat actcgcctgt gtaggcacgg
      301 cgtgtatccc atcggaaagg catatggagc gcccggcaaa agcggccggg cgattttcgc
      361 gtttgatagc ccagggcctc cgctcgggag cttcaccaaa gaaatgcagg ctttttgttt
      421 tcttgatccg aaaagaagaa gccctcccac gcccgatcag gagcatggga gggcttagga
      481 gccgatttct tcggagccag ctccgtcgca tcggccctgg gcatccgccc gggcgcgacc
      541 ccgtgcggac aatcgagaca gccaaccgcc gcctacagcg gcaaacgata ttggccgtta
      601 gcctgttcga tccagccttc gcggcaagca tcggagatag cgagttgagc ggtgcgtttg
      661 gaacattccg taaggttaac gatctcgccg cgtaactggg tataatgcac ctgctcgccg
      721 atattggcga tggcccgcgt aacgtcggtc ttctccacct tgcgacgtgg cgcagcgggg
      781 gaggcggtgc tggaggaagc ggtggaggag aaccagagcg tttgcggatt cagctccagc
      841 agccgcggcg gctgggccgc ggcgtagcgg aactggaagc gcaactcgat ggtggccagt
      901 tgcggagagg gccgcgtcaa cagcaagtag ctatcgccca ccgcatgcag agcgctggaa
      961 ccgcgaaagg cgctgccgat ctcgtgacgg ccaatcgatt tgcgcacgtg atgcaccacg
     1021 atgagagcag caccagaggc gtcgcgcagg cgcagtagcg actggcacag cgatgccatg
     1081 gcgcgcgtgt cattttcgtc ctggtcgtga gtggagtaga ggggatcgag cacgatgact
     1141 tccgccgcgg cagccttggc cgcggccagg aaatgaccaa gcccctgggt ggcactgagt
     1201 aagtggccgg cagcccgcgt gtccaccagc agccgctcgt cagcggctga gcctagcgcg
     1261 cggcgcatgc tggccagacg gctgacaaac tgcgctgtgg gcagttcgaa ctgacagacc
     1321 aggacacgcc tcgcggccgg aatggggaag ccgatgcgat ccacgccggc cgccagcgat
     1381 aatgccagat tggccaccag cagcgacttg cccaccttgg gttcaccgcc cacgaacaga
     1441 atgccttggg gcggcagcag ggccgactcc accaggcacg gcggtgccgc cgctggctgc
     1501 tgctccagca actggcccag cgaaagcacc acctccgctg gcgaagccgc cgccgccttc
     1561 acagcagcgc ctcgctggtg gcgtccagca gaatcgcttc ctggacgagg gaggccttgc
     1621 gcgccgcggc gatccgcagc gcggtcagag ccagtttgtt gaccttgcgc aggatgcctt
     1681 tggtggcttg atacagagcc tgccgcgcgg tgtcgtcaaa cagcggctgg gtgacgccgg
     1741 cggccttgag ctgatgcgcc agataggcgt cgagttcctc acgcgagagg ccttccaggt
     1801 gatactgcac ggcgatgcgc tggcgcagcg gctcgtgcat ctgcagcgat agcgtgcggc
     1861 gcagcagcgg ttggcccacc agtaacagcg tcaggtagcg ggaggcatcc atgtcgaagt
     1921 tca
//
LOCUS       DASQCV010000081         1842 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1010201, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000081 DASQCV010000000
VERSION     DASQCV010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1010201"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..862)
                     /locus_tag="VEQ16_01150"
     CDS             complement(74..862)
                     /locus_tag="VEQ16_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019086628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP62459.1"
                     /translation="MDLQLTGKLALVSGSTAGIGHAIAASLAREGAKVIVNGRKQGAV
                     EEAVTALQAKGGDVIGFAGDLSDAATAALLAKLHPVVEILVNNLGIFEPKAFLDIPDE
                     DWSRFFDVNVLSGVRLARLYLPAMQAKNWGRIIFISSESGVQIPAEMIHYGMTKTAQL
                     AISRGLAESLAGTGITVNAVLPGPTRSRGVGDFVEALANDQGKSVVQAEAEFFRDVRP
                     TSLLKRFATSEEVASMVTYVASPLASATTGAALRVDGGVIKSAF"
     gene            complement(923..>1842)
                     /locus_tag="VEQ16_01155"
     CDS             complement(923..>1842)
                     /locus_tag="VEQ16_01155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011631543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TRCF domain-containing protein"
                     /protein_id="HYP62460.1"
                     /translation="APSELERVMTDFGEGKYDILLATNIVESGLDMPAVNTLIIHRAD
                     MFGLAGLYQLRGRVGRGKQRGYAYLTWPPHHRLSAAAEKRLEVMQTLDQLGAGFTLAT
                     HDLDLRGAGNLLGDEQSGHIREVGIELYQQMLEDAVNAIRASAREKVVERGWTPNINL
                     GLPVLIPETYVADLPVRLGLYRRIGALPGDEESEALAAELADRFGPLPAEVENLLETV
                     ALKRACRNANVEKLDAGPKGMVIAFRKNDFANPTGLIQWMSSRGGTVKLRPDQKLVVA
                     RDMDVAARMKIARDVLGALVKLAKLEKAA"
BASE COUNT          342 a          595 c          556 g          349 t
ORIGIN      
        1 cagccttctg gcagtcgctc taggcagcac gcatggggcg gcccgctcta acaaaggcgg
       61 accgtttttt tcgtcagaaa gcactcttga tcacaccgcc atcaacgcgc aaggcggccc
      121 ccgttgtggc ggaagcgagc gggctggcga cataggtgac catcgaggcc acctcctccg
      181 acgtggcgaa gcgtttcagc agcgaggtgg gacggacatc gcggaaaaat tctgcctcgg
      241 cctgcaccac actcttgccc tggtcattcg ccaaggcctc gacaaaatcc cccacaccgc
      301 gcgagcgagt cgggccaggc agcacggcat tcacggtgat gccggtgccg gcaagcgatt
      361 ctgcgaggcc gcgcgagatg gcgagttgcg cggtttttgt catgccgtaa tgaatcatct
      421 cggctggaat ctgcacgcca ctttccgagg agatgaagat gatgcggccc cagttcttcg
      481 cctgcatggc gggcagataa agccgcgcca ggcgcacgcc gctcagcaca ttcacgtcga
      541 agaagcggct ccaatcctcg tccggaatat cgaggaaggc tttcggctcg aaaatgccga
      601 gattattcac caggatctcc acgacaggat gcagcttggc cagcagtgcg gccgtggcgg
      661 catcggagag atcacccgcg aagccaatga cgtctccgcc cttggcctgc aacgctgtca
      721 cagcctcctc caccgcgccc tgcttccggc cattgacgat gactttcgcg ccctctcgcg
      781 ccaggctggc ggcgatggca tggccgatac cggccgtgct gccggacaca agggcgagtt
      841 ttcctgtcag ctgaagatcc atgatatgcc tcctcacaaa tgccgtcccc gatgtaagga
      901 cggcattttg ctccgcaagc actcaggccg ctttttccag cttcgccagt ttcaccagcg
      961 cgcccaatac gtcgcgggca attttcatgc gcgccgccac atccatgtcg cgcgccacca
     1021 ccagtttctg gtcgggacgc agttttacgg tacctccgcg tgaggacatc cactggatca
     1081 acccggtagg gttcgcgaaa tcgttcttgc ggaaggcgat caccatgcct ttcggcccgg
     1141 catcgagttt ttccacattg gcgttgcggc aggcgcgttt cagcgcgacg gtttccagca
     1201 gattttccac ctcggcgggg agcgggccga agcggtcggc aagctcggcg gccagcgcct
     1261 cactctcttc atccccaggc agcgcgccga tgcgccggta caggccgagc cgcaccggca
     1321 aatcggccac ataggtttcg ggaatgagca ccggcaggcc gagattgatg ttgggcgtcc
     1381 agccgcgctc caccactttt tcacgggccg aggcgcggat ggcattcacc gcgtcttcca
     1441 gcatctgctg gtacaattcg atgccgacct cgcggatatg gccggattgt tcgtccccca
     1501 acagatttcc cgcgccgcgg aggtcaaggt catgcgtggc aagggtgaag ccggcgccga
     1561 gctggtcgag cgtctgcatc acttcgaggc gcttctctgc tgccgcactc aaacgatgat
     1621 gcggcggcca ggtgagatag gcatagccgc gttgcttgcc gcgcccgacg cgaccgcgca
     1681 gctggtacaa tccggcgagg ccgaacatat cggcgcggtg gatgatcagc gtgttcaccg
     1741 ccggcatgtc gagtccggat tccacgatgt tggtggcgag caggatgtcg tatttgccct
     1801 cgccgaaatc ggtcatcacc cgctccaact cggagggagc ga
//
LOCUS       DASQCV010000082         2925 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_844584, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000082 DASQCV010000000
VERSION     DASQCV010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2925)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2925)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2925
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_844584"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..719)
                     /locus_tag="VEQ16_01160"
     CDS             complement(<1..719)
                     /locus_tag="VEQ16_01160"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP62461.1"
                     /translation="MAVFRHNLFKISEVFITEQVRHYRRYQPFFLGRLRQGAVPEGMD
                     SLALGDLCPRAPLLPAGWHMLSRAIGPFERLLAERRPALIHAHFGIEGVYALPLAARL
                     GVPLVTTFHGFDATLSTLGFFGSPAWAWYPLLRPKLARQGDLFLCASNFIREQLLAQG
                     FPSERTRVHYIGVDSASIAPRAQEEETPVILHVARLVEVKGTEFLVRAFAALGPEYSA
                     VRLIIIGDGPLRGRLERLARE"
     gene            complement(733..1974)
                     /locus_tag="VEQ16_01165"
     CDS             complement(733..1974)
                     /locus_tag="VEQ16_01165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007400084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYP62462.1"
                     /translation="MTLLDKYAALAAQYRQLEEAGSNPFNVAFETILSPTEAIIGGRT
                     TLLLGTNNYLGLTYDPAVIAKSVEAVELSGTGTTGSRIANGSYDGHRGLERALADFYG
                     RKHGMVFSTGYQANLGILSALAGKDDHLILDADSHASIYDGARLGHAQVTRFRHNSPE
                     DLANRLRRLKDTPGDKIIVVEGIYSMLGDTAPLREFAAVKREYGAYLVVDEAHSLGVL
                     GATGRGLAEAAGVEKDVDFIVGTFSKSLGGVGGFCVADIDGFDILRVVSRPYMFTASL
                     PPAVIAATLEALHQLRLQPSLRHQLISNSRRLYDGLCVLGFTVGPEPSPVVSTVMPDP
                     ETAFAFWSRLLAAGLYTNVSLPPATPKGLALLRSSVSAAHSTAQIDHAIGLFAEAGRE
                     LGLIPPAGVPARGEVYLAAAK"
     gene            complement(1993..2244)
                     /locus_tag="VEQ16_01170"
     CDS             complement(1993..2244)
                     /locus_tag="VEQ16_01170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HYP62463.1"
                     /translation="MKDSDGDLREIIFETLRGALPRPVELSEQTHIVDDLGLDSVAVM
                     DFVMELEDRLDVSVPLDRIAEIETLGDLVGALRDLMARV"
     gene            2460..>2925
                     /locus_tag="VEQ16_01175"
     CDS             2460..>2925
                     /locus_tag="VEQ16_01175"
                     /inference="COORDINATES: protein motif:HMM:NF015684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HYP62464.1"
                     /translation="MIITEYLAREIGKPFAVILAILCALFGGYSISSSLADPANGLLP
                     TAIIFELAGLKLLISQDVLIPVALYFAVLLSFSRLHADREIAAMQALGASPIRAVRAV
                     LGIAVVTALAVCVMAMLARPWAYRTSHDITWLGATKVDLDAMQPGTFYASQDG"
BASE COUNT          600 a         1016 c          802 g          507 t
ORIGIN      
        1 cattcccgcg ccagccgctc caaccgtccg cgcaacggtc catcgccaat gatgatcagc
       61 cgcacagcag aatattccgg cccaagcgca gcaaaagcgc ggaccagaaa ttcggtccct
      121 ttaacttcca ccagcctggc cacatgcaag atcaccggcg tttcctcctc ctgcgcccgt
      181 ggcgcgatgg aagcgctatc cacccctata tagtgcacgc gcgtgcgttc cgatggaaaa
      241 ccctgcgcca gcagctgctc tcgaatgaag tttgacgcac acagaaacaa atctccttgc
      301 cgcgccagct tcggccgcag cagcgggtac caggcccagg ctggcgagcc gaaaaacccc
      361 aatgtcgaaa gcgtcgcgtc aaacccgtga aaagtcgtta ccagaggcac acccagcctc
      421 gccgccagcg gcaaagcata aaccccctcg ataccgaaat gcgcatgaat cagcgctggc
      481 cgccgttccg ccagcagccg ctcaaacggc ccgatggcgc ggctcaacat atgccacccc
      541 gccggcagca gcggcgcgcg cgggcacaaa tctcctagcg ccagcgaatc cattccttcc
      601 ggaaccgcac cctggcgcag ccgccccaaa aagaacggct gataccggcg ataatgccgg
      661 acctgctcgg taataaaaac ttcggaaatc ttgaacaggt tgtggcggaa gactgccact
      721 tccggcctgg tgttatttgg cggcggcgag atagacctct cctcgagccg gcacgccggc
      781 aggcggaatc agccccagct cccgtcccgc ctcggcgaac aggccgatgg catggtcgat
      841 ctgcgccgtg ctgtgcgcgg cactcacgct cgagcgcagc agcgccagcc ccttcggcgt
      901 ggccggcggc aggctcacat tggtgtacag ccccgcagcc agcagccgcg accagaaggc
      961 gaaggccgtc tccgggtccg gcatcacggt ggacacaacc gggctcggct ctggccccac
     1021 ggtgaagccc agcacgcaaa gcccgtcata gaggcgcctt gagttgctaa taagctggtg
     1081 gcgcaaggag ggctgcaggc gcaactggtg cagcgcctcc agcgtcgcgg caatcaccgc
     1141 cggcggcagc gacgccgtga acatgtaagg ccggctcacc acgcgcagaa tatcgaatcc
     1201 gtcaatatcc gccacgcaga acccgccaac cccgcccagg ctcttggaga aggtgccgac
     1261 aataaaatcg acatcctttt ccactccggc cgcttcggca agaccgcgcc cggtcgcgcc
     1321 cagcacgccc agcgaatgcg cctcatccac cacgaggtaa gcaccatatt cgcgcttcac
     1381 cgcagcgaat tcgcgcaatg gcgctgtgtc gcccagcatg gaatagatgc cctcgacgac
     1441 gataatcttg tcgcccggcg tatccttaag ccgccgcagc cggttggcga ggtcctccgg
     1501 gctgttgtgc cggaaacgcg tcacctgtgc atgacccagc cgcgccccgt catagatgct
     1561 ggcatgggag tcggcatcca ggatcagatg atcatccttg cccgccagcg cggacaaaat
     1621 gccgagattg gcctgatacc cggtggaaaa caccatgcca tgcttgcggc catagaaatc
     1681 ggccagtgcc cgctccagcc cgcgatgccc atcatagctg ccattagcga tgcgcgagcc
     1741 cgtggtcccg gtaccggaaa gttccaccgc ttccaccgac ttggcgatca ccgccgggtc
     1801 ataggtcagg ccgagataat tgttcgtccc caacagcaat gtcgtgcgcc cgccgataat
     1861 cgcctcagtg ggcgacaaga tggtctcgaa cgcgacgttg aacgggttgc tgccagcctc
     1921 ttccagctgg cgatactgcg ccgcgagcgc ggcatacttg tctaagagcg tcatcagcga
     1981 aacatcacac cgtcaaacgc gggccatcag gtcgcgcaac gcgcccacga ggtcgcccag
     2041 cgtctcaatc tcggcaatcc tgtccagtgg caccgacaca tcgagcctgt cctcaagctc
     2101 catgacgaaa tccatcaccg ccacggaatc gagcccaaga tcatcgacga tatgcgtctg
     2161 ttccgataat tccaccggcc gtggcagcgc accgcgcaat gtctcgaaga tgatctcacg
     2221 gagatcgccg tcagaatcct tcatgtcgtg ggtcagtccc tctgtagccc atggtccaac
     2281 tttgcatgtc cacaccgagt cggcactcgc gcggatgaca atttcataac atcggctata
     2341 cttgccaacg caaataaatt aaagggcagc cttgccttag agagggcgtg tttacagatg
     2401 gcagcatccc gcgattccgg ccccgccagc gccggccggg cagtggatgg cttaacgctt
     2461 tgattatcac cgaatatttg gcccgagaaa tcggcaaacc gtttgccgtc atcctagcca
     2521 tattatgcgc cttgttcggc ggctatagca tctcctccag cctggccgac ccagccaacg
     2581 gcctgctgcc caccgccatc atcttcgagc tggccggtct caagctgctg atttcccaag
     2641 atgtcctcat ccccgtggcg ctttatttcg ccgtgctgct cagtttcagc cgtctgcatg
     2701 cggaccgcga aatcgccgcc atgcaggcgc tgggcgcctc gccgatccgt gccgtgcgcg
     2761 cggtgctggg catcgccgtt gtcaccgcct tggccgtctg cgtcatggcc atgctggccc
     2821 ggccctgggc ctaccgcacc tcgcatgaca tcacttggct tggcgccacc aaggtcgatc
     2881 tcgacgccat gcagcccggc accttctatg ccagccagga tggca
//
LOCUS       DASQCV010000083         1615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3166096, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000083 DASQCV010000000
VERSION     DASQCV010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3166096"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..526)
                     /locus_tag="VEQ16_01180"
     CDS             complement(<1..526)
                     /locus_tag="VEQ16_01180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007088854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HYP62465.1"
                     /translation="MGAAFWDWVNLLLRWSHVMLGIAWIGTSFHFIWLDASLRREEGQ
                     PEGVSGGSWMVHGGGFYHARKFLVAPAALPKELHWFKYEAYFTWVSGFLLLAVVYYLG
                     ANEFLIDPAVMALSPAAAIAISMGSLIAGWICYDQLCRSPIGQKTGPLAVGVFILALG
                     AAYAFSQVFSGRAAF"
     gene            612..1562
                     /locus_tag="VEQ16_01185"
     CDS             612..1562
                     /locus_tag="VEQ16_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008888429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYP62466.1"
                     /translation="MPDTEDIAIFVRVVELGSLTAAGRDMRMSVAVVSNRIARLEGRM
                     GARLLNRTTRRVQPTQEGALFYEHSVAILNELEQAESGISERTDDPRGPIRVTMPAAF
                     GRMHVAPYIPAFVQRYPNVQIRLHLTDQFMDLIQDRMDLAIRIAELGDSNAIARKLAP
                     NRRFIVAAPGYLLRHGHPYQPADLLKHNCLLLRFPGSKQFRWTLETPEGPQTLRVAGT
                     MDSNNGEVLRQWCLAGQGLALKSLWEIAEDLNAGRLQIVLPEYPPPGHAIHALYPQNR
                     FLSSRVRVFIDYLAEIYGPVPPWERVIKVKLPEPRATAAS"
BASE COUNT          295 a          542 c          519 g          259 t
ORIGIN      
        1 gaaaggccgc ccggccgctg aagacctggg agaaggcata ggccgcgccc agggcgagga
       61 tgaagacacc gaccgccagg gggccggtct tctggccgat gggcgagcgg cagagctggt
      121 cgtagcagat ccagccggcg atgaggcttc ccatgctgat ggcgatcgcc gcggcggggg
      181 agagcgccat gacggcggga tcgatcagga actcgttggc accgaggtaa tagacgacgg
      241 ccagcagcag gaagccgctg acccaggtga aataggcctc gtatttgaac cagtgcagct
      301 ccttgggcag ggctgccggc gccaccagga acttgcgggc gtgatagaag ccgccgccat
      361 gcaccatcca gctgccgccg gacaccccct cgggctggcc ctcctcgcgg cgcaggctgg
      421 cgtcgagcca gatgaaatgg aaggaggtgc cgatccaggc gatgccgagc atcacatggc
      481 tccagcgcag aagcaggttc acccaatccc agaaagcggc ccccatcccg ccagcatgag
      541 gttttttcga ttatcgtgct tcatgctatg aatagataca ttttcaacga ttcttagata
      601 atcgggacgg aatgccggat accgaggaca tcgcgatctt cgtgcgagtg gtggagcttg
      661 gcagcctgac cgccgccggg cgcgacatgc gcatgtcggt ggcggtggtc agcaaccgca
      721 tcgcccgcct cgagggtcgc atgggcgcgc gcctgctgaa ccgcaccacc cggcgtgtgc
      781 agccgaccca ggagggtgcc ctgttctacg agcacagcgt ggcgatcctg aacgagctgg
      841 agcaggccga gagcggcatc tccgagcgca ccgacgatcc ccgcgggccc atccgggtga
      901 ccatgccggc ggccttcggg cggatgcatg tggcgcccta tatccccgcc ttcgtccagc
      961 gctatccgaa cgtccagatc cgcctgcatc tgacggatca gttcatggac ctgatccagg
     1021 accgcatgga cctcgccatc cgcatcgccg agctcggcga ttccaacgcc atcgcccgca
     1081 agctcgcgcc caaccggcgc ttcatcgtcg ccgcccctgg ctatctcctg cgccatggcc
     1141 acccttacca gcccgccgat ctgctgaagc acaactgcct gctgctgcgc ttccccggct
     1201 cgaagcagtt ccgctggacc ctggaaactc cggaaggacc ccagaccctc agggtggccg
     1261 ggaccatgga ttccaacaat ggcgaggtgc tgcgccaatg gtgcctggcg gggcaggggc
     1321 tggcgctgaa atccctctgg gagatcgcag aggatctgaa tgccgggcgg ctgcagatcg
     1381 tgctgccgga atatccgccg ccgggtcatg cgatccacgc cctctatccc cagaaccgct
     1441 tcctctcctc ccgggtcagg gtcttcatcg actacttggc ggagatctac gggccggtgc
     1501 cgccctggga gcgcgtgatc aaggtcaagc tgccggagcc gcgggcgacc gccgcttcct
     1561 agctagggcg ccaccgccgc ggcgttgcaa gccgccagaa acttctggat cgcct
//
LOCUS       DASQCV010000084         1798 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1010480, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000084 DASQCV010000000
VERSION     DASQCV010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1010480"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..619
                     /locus_tag="VEQ16_01190"
     CDS             <1..619
                     /locus_tag="VEQ16_01190"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HYP62467.1"
                     /translation="SAAHQLGALDAETRAAIATVNGIISATGISPARAVRPQSSLPAA
                     PSQNQATALHKDLAQLAALSEFLRKMPLARPVTQMAMSSPFGYRPDPWTGAREFHVGI
                     DLRGPEGTPVYATAPGIVIFAGVQTGYGEIIEIDHGYGLSTRYSHLDRILVRRGDKVA
                     LHEEIGLLGNTGWSTGPHLLYETRLDGAPENPLNFLKVSANEVQD"
     gene            603..1004
                     /locus_tag="VEQ16_01195"
     CDS             603..1004
                     /locus_tag="VEQ16_01195"
                     /inference="COORDINATES: protein motif:HMM:NF016408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HYP62468.1"
                     /translation="MKFKTSPAPSPFGNARGVPTIISADMVIEGHFKTPGDIQVEGTI
                     TGQIEAGRLVLAESGVINGNVTAETARICGTLNGCVTGGSITLTATAKLTGDVYHDVL
                     AIEAGGLLDGLSRRRGAAKPIALVEAPQAAE"
     gene            1135..>1798
                     /locus_tag="VEQ16_01200"
     CDS             1135..>1798
                     /locus_tag="VEQ16_01200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011253378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HYP62469.1"
                     /translation="MSSARHTAPVTFIPEKPEPKALVKPLRVVSDYQPAGDQPTAIKQ
                     LVEGISAQDRDQVLLGVTGSGKTFTMAKVIEAIQRPTLVLAPNKTLAAQLYAEMKGFF
                     PDNAVEYFVSYYDYYQPEAYVPRSDTYIEKDSAINETIDRMRHAATQALLERGDVVIV
                     ASVSCIYGIGSVETYSKMVVRLETGGRIERDALAKALVDLQYRRNDMAFARGTFRIRG
                     ENV"
BASE COUNT          343 a          585 c          556 g          314 t
ORIGIN      
        1 gagtgccgcg caccagctcg gcgcgctgga cgccgagacc agggccgcca tcgccacggt
       61 gaatggcatt atcagcgcga ccggcatcag tcccgcccgg gccgtgcggc cgcaatcttc
      121 cctgcccgcc gcgcccagcc agaaccaggc cacagcgctg cacaaggatc tggcgcagct
      181 cgccgcgctg agcgagtttc tgcgcaagat gccactggcc aggccggtga cgcagatggc
      241 gatgtccagc ccgttcggct accgtcccga tccctggacc ggcgcgaggg aattccatgt
      301 cggcatcgat ctgcgcgggc ctgaaggcac gccggtttat gctaccgcgc ccggcatcgt
      361 catttttgcc ggcgtgcaga cgggctatgg cgagatcatc gagatcgacc atggctatgg
      421 gctttccacg cgctattcgc atctcgaccg catcctcgtg cgccgcggtg acaaggtggc
      481 gctgcatgag gagatcgggc tgctcggcaa taccggctgg agcacggggc cgcatctgct
      541 ctacgagacc aggctcgatg gcgcgcctga aaatcccctc aactttctga aggtcagcgc
      601 gaatgaagtt caagactagc ccggccccct ccccgttcgg caacgcgcgc ggcgtgccca
      661 ccatcatcag cgccgacatg gtgatcgagg gccatttcaa aacccccggc gacatccagg
      721 tggaaggcac catcaccggg cagatcgagg ctgggcggct ggtgctggcc gagagcggcg
      781 tgatcaatgg caatgtcacg gcggagacgg cgcgcatctg cggcacgctg aatggctgcg
      841 tgacgggcgg cagcatcact ttgaccgcga ccgcgaaatt gaccggcgat gtgtatcacg
      901 atgtgctggc gatcgaggcc ggcgggctgc tggacggcct gtcccgccgc cgcggcgcgg
      961 ccaagcccat cgcgctcgtt gaggccccgc aggctgcaga gtaagccccc taaaagtcac
     1021 aaaagttttt ggcgcgcctt ttttcaaaag gcgcaatcgc cgaggttttt gtgcggccct
     1081 gcctccatgc agcagcttct tcctttcaca gcacggcaag ccatatagtg gcccatgtcc
     1141 agcgcacgtc acacggcccc cgtcaccttc atccccgaga aaccggagcc aaaggcgctg
     1201 gtgaaaccct tgcgcgtggt gtccgactac cagccggccg gcgaccagcc caccgccatc
     1261 aagcagttgg tggagggcat ttccgcgcag gatcgcgacc aggtgctgct cggcgtcacc
     1321 ggctcgggca agacgttcac catggccaag gtcatcgagg cgatccagcg ccccactctg
     1381 gtactggcgc cgaacaagac tctcgcggca cagctctatg ccgagatgaa aggattcttc
     1441 cctgacaatg ccgtcgaata tttcgtcagc tactatgatt attaccagcc cgaagcctat
     1501 gtgccgcgct cggacacata catagaaaaa gattccgcca tcaacgagac catcgaccgc
     1561 atgcgccatg ccgccacaca ggcgctgctg gagcgcggcg atgttgtgat cgtcgcatcg
     1621 gtgtcctgca tctatggtat cggctcggtc gaaacctatt cgaaaatggt ggtgcggctg
     1681 gaaacaggcg ggcgcatcga gcgtgatgcg ctggccaagg cgctggtgga tctgcagtat
     1741 cgtcgcaacg acatggcgtt cgcgcgcggc acattccgga ttcgtggcga aaatgtcg
//
LOCUS       DASQCV010000085         6739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1508283, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000085 DASQCV010000000
VERSION     DASQCV010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6739
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1508283"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="VEQ16_01205"
     CDS             complement(<1..544)
                     /locus_tag="VEQ16_01205"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HYP62470.1"
                     /translation="MSLVPAPRINTNDDQVGVVAWHVEDGAFVNIGDDLADLETSKAV
                     VTITAEIAGYVQRIARKGDIVKVGMPICRVSSTLQEEVREPAMALAVNDVAPPPLLPS
                     GPYGHTRFSPQARKLLAMLDIPELAFEGAGLVTGRMVKDHKEGKRQPEPRPRGALSPA
                     LMPAAPGAREDVTPLAKRAEI"
     gene            complement(541..2445)
                     /locus_tag="VEQ16_01210"
     CDS             complement(541..2445)
                     /locus_tag="VEQ16_01210"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HYP62471.1"
                     /translation="MKSRLVEEALLEMFSRGKLHGTVHTCIGQELSGAIITEFLQPGD
                     TIFSNHRCHGHFISRNDDIEGLIAELMGRKTGVSGGLGGSQHLCKDGFYSNGIQGGIV
                     PVAAGLALGHELRGHGDISVVFIGDGTLGEGVIYETFNLISKWNLPLLIVLEDNKYSQ
                     STAQAETLAGDICARAAAFGIETAKGDTWNWPALCDTAGELIAAMRQDQRPRFLQVET
                     FRLKAHSKGDDTRERSLVEPFELSDPLTLFLSAAAAEDQVWIEEIRQRVIKAEQQADL
                     APPAMLPDLSSAPAALQWRELHSDEDKSRMVVSLAGTFETLMRERADMFMMGEDIVSP
                     YGGAFKATKGLSDLFPGRVRNTPISEACITGMGAGLALAGFRPLVEIMFGDFIGLAFD
                     QIINHAAKFRQMYNEQVNCNLIVRTPMGGGRGYGPTHSQTLDKHFLGVPGLRVVAQNI
                     FVPPAQIYRPLLEQESGPVLMIENKLLYGSYIPARIPAGFDLLLSNELVPSAWIRPDA
                     GAYDLTLLGYGGTAEMLLEAADRLFEEHDLVAQIFVATQIYPFDARSVLDILTRAPRL
                     LIVEEGQGFAGFGAELLAQLAESGVLEKISVRRVMPQAFCIPSCGPLEKEYLPSTASI
                     IAQAVDWSAA"
     gene            complement(2890..4365)
                     /locus_tag="VEQ16_01215"
     CDS             complement(2890..4365)
                     /locus_tag="VEQ16_01215"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HYP62472.1"
                     /translation="MMRRSISTLLLGLLSGCSLIPAYQRPAAPIAADWPASAGATGTG
                     PAAADMGWHEFFSDPALQSLIALGLENNRNLRIAVLNVQQAQAQYASDRANLFPMIDA
                     TAAMQRERIPADLSNSGAAENFSEYSIGAGTVSWELDLFGKIRSQAKAAEETYLGDAD
                     TQLSTQISLVAQIASSYYAWLADREALQVAQETAATEANSLQLTQLQLAHGAATAQDV
                     AQAQSALYTAQASVAAFTRQVSQDMDELVLLVGTPLPGELLTQMNEVSGLDAEPPLPE
                     LPAGLPSDLLWRRPDIRAAEHNLLAANANVGAARAAFFPSITLTANGGTASSGLAHLF
                     AAGQGSWLFEPTVTVPIFTAGQNLANLDIARIEKRVEIATYEQTIQSAFHDTADALNA
                     RATYGAQVEAEQNLVNADSTYYNLASMRFQGGIDSYLNVLVATNSLLQARLSLIALKL
                     ETRQNDITLYKALGGGWEENSTPASVQNVTAAPQPIALKPG"
     gene            complement(4362..>6739)
                     /locus_tag="VEQ16_01220"
     CDS             complement(4362..>6739)
                     /locus_tag="VEQ16_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012812324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP62473.1"
                     /translation="VRLHDVGHVELGAQSYSVSGLYNNMPASGIGLKLTPGGNQISTE
                     NAVKAELATLSKSLPPGLKIVYPFDTQPYIVLSLTEVVKTLFLAIGLVFLVMLLFLQN
                     FRATLIPTIAVPVVLLGTFAVMAALGYSINTLTMLAMVLAVGLLVDDAIVVVENVDRL
                     MHERKLSAREAARQSMDEISGALVGIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISA
                     MALSVVTALIFTPALCATLLRPPEEAGLHHHGFFAWFNRGFNAIRERYLGITRKMTRH
                     RRLTMLGFLGIVALMAFLFMRMPVGFLPDEDQGLLVGQAVLPAGSTAEQTAALNKQMT
                     DYALSHESKNVASAFTATGFSLAGQAQNQGFLVLNMKDWSQRPDPSQSVSAVAGRMMA
                     HFADNRDGKVIIFQPPPVIELGNATGFDMELENTGNLSHADFLAARNQLLGMAAQSPL
                     FAAVRPNGLEDAPQFNLNVDRERASAMGISIANLNTTIQGALASEFVDQFTRGGRVKQ
                     VYVQGVPDARMQPSDLARWYVRNGSGSMVPFDAFVTGDWGVGPQKVELYNGNLSYEIQ
                     GQPAPGVSSGAAMAEMEKLVAKLPPGVGLEWTGLSYEQVKAGSQTMALYSVSVVVVLL
                     CLAALYESWSIPAAVILVIPLGIIGAILATLLRGLDNDVYFQVGLLTTMGLATKNAIL
                     IVEFARAFFEQGASLAEAALHAAQERFRPILMTSIAFIFGTFPLAVATGAGAASRMAI
                     GTAVVGGMLSATILAVFFVPVFFVVVLTFTKVRRRSELAALAAAIDTGRAE"
BASE COUNT         1445 a         2079 c         1979 g         1236 t
ORIGIN      
        1 caatctcggc gcgcttggca agcggcgtaa cgtcctcccg cgcccccggc gctgccggca
       61 tcaatgctgg cgaaagcgcg ccacgcggcc gcggctctgg ctgcctcttt ccttccttgt
      121 gatccttgac catacgcccg gtgaccaacc ccgcgccctc gaaagcaagt tcgggaatat
      181 cgagcatggc gagaagtttt ctagcctgag gcgagaagcg tgtgtggccg tagggcccgg
      241 aaggtaacag tggcggcggt gcaacatcat tcaccgccag cgccattgcg ggctctctca
      301 cttcctcttg caatgtcgaa gaaacccggc agatcggcat ccccactttc acgatatcgc
      361 ccttgcgggc aatccgctgg acatagccgg caatctccgc cgtgatggtg acaacagcct
      421 tcgatgtttc gagatccgca agatcatcac caatattgac gaaggctcca tcctcaacat
      481 gccacgccac gacgccaacc tgatcatcat tcgtgttgat gcgtggcgcc gggacaaggc
      541 tcatgccgcg ctccaatcga cagcctgcgc gatgatgcta gccgtgctcg gcagatactc
      601 cttctcaagc ggcccacagc tcgggataca gaaggcctgt ggcatcacgc gccgcaccga
      661 aattttctcc agcacgccgc tctccgccag ttgggcgaga agctcggcac cgaaccccgc
      721 gaagccctgc ccttcctcga caatcagcag ccgcggcgcg cgcgtcagaa tatcgagcac
      781 ggaccgcgcg tcgaaagggt agatttgcgt ggccacgaaa atttgcgcca ccagatcatg
      841 ctcctcgaac agccggtccg ccgcttcgag gagcatctcg gccgtgccgc catagccgag
      901 caaggtgaga tcgtaagcgc cggcatcggg gcgaatccag gcggagggaa caagctcgtt
      961 tgacagcaaa agatcaaatc cggcgggtat ccgcgcggga atatagctgc cataaagcag
     1021 cttgttctcg atcatcagaa caggcccgct ctcctgctcc agcagcggcc tgtaaatctg
     1081 cgccggcggc acgaatatgt tctgtgccac gacgcgcaat ccgggtacgc cgagaaaatg
     1141 cttgtccagc gtctggctat gggttggtcc atagccgcgg ccgccgccca tgggcgtacg
     1201 gacgatgaga ttgcagttca cttgttcatt atacatctgc cggaatttcg cggcatgatt
     1261 gatgatctgg tcgaatgcca ggccgatgaa atcgccaaac atgatctcga caagcggacg
     1321 gaatccggca agggccagtc cggcacccat gccggtaatg caggcttccg agatgggcgt
     1381 gttccgtacc ctgcccggaa ataaatctga gagacccttc gtcgccttga aggcgccgcc
     1441 atagggagag acgatgtcct cacccatcat gaacatatcg gcacgctcgc gcatcagagt
     1501 ctcaaacgtg cccgccaagg atacaaccat gcggcttttg tcctcatccg agtgcagttc
     1561 gcgccactgc aatgcggccg gcgccgacga cagatcgggc agcatcgcag gtggagcgag
     1621 atcagcctgc tgctccgcct tgatgacgcg ttgccggatc tcctcaatcc agacctgatc
     1681 ttctgccgcc gccgcgctaa ggaacaaggt gagcgggtcg ctgagctcga acggttcgac
     1741 caagctgcgc tcgcgtgtgt catcgccttt tgaatgggcc ttcagcctga aggtttccac
     1801 ttgaaggaaa cgcggccgct ggtcctggcg catggccgca ataagctcac cggcagtgtc
     1861 gcacagcgcc ggccagttcc atgtatctcc cttggccgtt tcaatgccga aagcagcagc
     1921 acgggcgcag atatctcccg ccagcgtttc agcctgcgct gtggattgcg agtatttatt
     1981 gtcttccaga acgatcagaa gtggcagatt ccattttgat atgagattga atgtctcata
     2041 gatgacgcct tccccgagcg tgccatcgcc gatgaagacg acgctgatat cgccatgccc
     2101 gcgcaattca tgccccagcg ccagcccagc cgccacgggc acgatgccgc cttgaatgcc
     2161 gttggaataa aacccatcct tgcataaatg ctggctgccg cccaacccgc ccgatacgcc
     2221 ggtcttccgc cccatcaatt cggcgatcag cccctcaata tcatcgttac gggaaataaa
     2281 atgcccgtga cagcgatgat ttgaaaagat tgtatcacct ggctggagaa attcggtgat
     2341 gatcgcgccg gaaagctcct ggccgatgca ggtatgcacc gtgccatgca gcttgcccct
     2401 ggagaacatc tcgagcagag cctcttccac caaccgtgac ttcacagctt tctgaaaaat
     2461 gctcagggca cgcggatgta ggtgcagggc aagcgagcca atgtccgtgt cccgagacgc
     2521 aacagccttc aatccagcca tgtattaact ttcacatgcc gcaggagaag caaagccgca
     2581 aatagccatc acattaccgg aacatggcta gatttatgat ctgaccatta catttccaga
     2641 caagcgtcag tctgaaccac ggggcaaata actgtcaatg acaaaatcta caactttaac
     2701 attttatatc aggaatgatg aattttgccc agcaaaaccc tttgatttcc gagggaaaca
     2761 acgaaccatc ctgacagatc cgtgacgatt tatggtttta tgacaggcaa tcccacgacc
     2821 aaaacagcaa ccatagatat caaaatctac caagccagga cacgttttgg ttgttaattg
     2881 ctcacggacc tagcctggct tcagtgctat gggctgcggc gctgccgtga cattttgcac
     2941 agatgccggg gttgaatttt cctcccagcc gccaccaagc gccttataga gcgtgatgtc
     3001 attctgccgc gtctcaagct tgagcgcgat tagtgacagc cgtgcctgca gcagcgagtt
     3061 tgtcgccacc aatacgttaa ggtaactatc gataccaccc tggaaacgca tactggcgag
     3121 attgtaatag gtgctgtcgg cattaacgag attctgttct gcctcgacct gcgccccata
     3181 ggttgcccgc gcgttcagcg catcagcggt atcgtggaag gcggactgga tggtctgctc
     3241 ataggtagcg atttccacgc gcttctcgat ccgcgcaatg tccagattgg cgagattctg
     3301 tcccgcggtg aaaatcggca cggtgaccgt gggctcgaac agccatgatc cctggccggc
     3361 cgcgaacaaa tgagcgagcc cgctgctggc tgtgccgcca ttggcggtga gggtgatgga
     3421 ggggaagaag gccgcccgcg ccgcgccaac attggcgttg gcggcgagta gattatgctc
     3481 cgctgcacgg atatcaggcc ggcgccagag caggtcggaa ggcaggccgg ccggcagctc
     3541 aggcagtggc ggctccgcat ccagcccgga cacttcgttc atctgcgtga gcagttcgcc
     3601 cggcagcggc gtgccgacga gcagcaccag ctcatccatg tcctggctca cctgccgcgt
     3661 aaaggctgcc acgctcgcct gcgccgtata gagggcggat tgcgcctgag cgacatcctg
     3721 cgccgtcgcc gcgccatggg cgagctgcaa ttgtgtgagc tgcagcgaat tcgcctcggt
     3781 ggcggcggtt tcctgggcca cctgcagcgc ctcgcggtcc gcgagccaag cataataact
     3841 agaggcaatt tgcgcgacga ggctgatctg cgtggagagt tgcgtatcgg catcgccgag
     3901 ataagtctcc tccgccgcct ttgcctgact gcggatcttg ccgaacagat cgagctccca
     3961 cgacaccgtg ccggcgccga tgctgtattc gctgaaattt tccgccgcac cgctgttcga
     4021 gagatcggcc gggatacgct cgcgctgcat ggccgccgtg gcgtcgatca tggggaagag
     4081 attggcgcgg tccgaagcat attgcgcctg cgcctgttgc acattgagga cggcgatgcg
     4141 caggttgcga ttattctcca agcccaaggc aatgagggat tgcaaggcgg gatcgctgaa
     4201 aaactcgtgc cagcccatat ccgcggcggc ggggccggtt cccgtggcac cggcactggc
     4261 gggccagtcg gcggcgatgg gcgccgccgg gcgctgatag gcggggatga ggctgcagcc
     4321 gctaagcaga cccaacagca aggtggaaat ggaacgccgc atcattcggc cctcccagta
     4381 tcaatggcgg cggcaagcgc cgccagttcc gagcgccgcc tgactttggt gaacgtcagc
     4441 acgacgacga agaagacagg cacgaagaac accgcgagga tggtggcgct gagcatgccg
     4501 ccgaccacgg cggtaccgat ggccatgcgg ctggccgccc ccgcgccggt tgccaccgcc
     4561 agcggaaacg tgccgaagat gaaagcgatc gaggtcatga ggatgggacg gaaccgttcc
     4621 tgcgccgcat gcaaggcagc ctcagccaag gacgcgccct gctcgaagaa agcgcgggca
     4681 aattcgacga tgagaatggc gttcttggtg gccagcccca tggtggtcaa cagcccgacc
     4741 tggaaataca catcattatc cagcccgcgc aacagcgtgg cgaggatggc gccgatgatg
     4801 ccgagcggaa tgacgaggat caccgcagcg gggatcgacc agctctcata gagcgcggcc
     4861 aggcatagca gcacgacgac cactgagacc gagtacagcg ccatggtctg cgagccggcc
     4921 ttcacctgct cgtaggacag gccagtccat tccagcccca cgcccggcgg gagcttggcc
     4981 acaagcttct ccatctccgc catagcggcg ccactgctca cgccgggcgc cggctggccc
     5041 tggatttcgt aagacaggtt gccgttatag agctccactt tctgcggccc cacgccccaa
     5101 tcgccggtca cgaaggcatc gaaaggcacc atggagcccg aaccgttgcg gacataccag
     5161 cgcgccaaat cggaaggctg catgcgcgca tccggcacgc cctgcacata gacctgtttc
     5221 acccgcccgc cgcgggtgaa ctggtcgaca aactccgagg ccagcgcgcc ctggatcgta
     5281 gtattcaggt tggcgatgga aatgcccatg gccgaggctc tttcacgatc cacattcaga
     5341 ttgaattgcg gtgcatcctc cagcccgttg gggcggacgg cggcgaacag cgggctctgc
     5401 gccgccatac cgagtagctg gttgcgcgca gcaagaaaat cggcatggct gagattgccg
     5461 gtgttttcca gctccatatc gaagcccgtg gcattgccga gctcgatcac cggcggcggc
     5521 tggaagataa tgaccttgcc atcccggttg tcagcgaaat gcgccatcat ccgccccgcc
     5581 accgcgctaa cggattgcga ggggtccggc cgctgcgacc agtctttcat gttgagcacg
     5641 aggaagccct gattctgtgc ctgtccggca aggctgaaac ctgtggcggt gaaggccgaa
     5701 gctacattct tcgactcatg tgaaagagcg taatctgtca tctgcttgtt gagggcggca
     5761 gtctgctccg cggtggagcc cgccggcagc acggcctggc cgaccagcag cccctgatcc
     5821 tcatccggca ggaagccgac gggcatgcgc atgaacaaga acgccatcag cgccacgatg
     5881 cccagaaagc ccagcatcgt gaggcggcgg tggcgcgtca tttttcgggt aatgccaaga
     5941 taacgctcgc gtatggcatt gaagccgcga ttgaaccagg cgaagaaacc gtgatgatgc
     6001 agtcccgcct cctcgggcgg ccgcagcaat gtcgcgcaca aagccggcgt gaagatgagc
     6061 gcagtgacga cggagagcgc catcgctgaa atgatggtga cagaaaattg ccggtagatc
     6121 acacccgtgg agccgccgaa gaaggccatg ggcaggaaca cggcggagag cacgagcgcg
     6181 atgccgacca gcgcgccgga aatctcatcc atcgattgtc ttgccgcctc gcgcgcggag
     6241 agtttgcgct catgcatcag ccggtcgaca ttctccacca ccacgatggc gtcgtcgacc
     6301 agcagcccca cggcgagcac catcgccagc atggttagcg tgttgatgga atagcccaaa
     6361 gccgccatca ccgcgaaggt gcccagaagc accacgggca cggcgatggt ggggatgagg
     6421 gtggcgcgga aattctgcaa gaacagcagc atcacaagaa agacgagacc aatggcaaga
     6481 aacagcgtct tcaccacctc ggtgagcgac aacacgatat aaggctgggt gtcgaacgga
     6541 tagacgatct tgagtcccgg cggcaggctc ttgctcaatg tcgccagctc cgccttcaca
     6601 gcattctcag tcgaaatctg gttgccgccc ggcgtcagct tcagcccgat gccgctggct
     6661 ggcatgttgt tgtacaagcc ggagacggaa tagctctgcg cgcccagctc gacatgcccc
     6721 acgtcatgca gccgcacct
//
LOCUS       DASQCV010000086         3185 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1342529, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000086 DASQCV010000000
VERSION     DASQCV010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3185
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1342529"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..230)
                     /locus_tag="VEQ16_01225"
     CDS             complement(<1..230)
                     /locus_tag="VEQ16_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494353.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0015837 - amine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYP62474.1"
                     /translation="MFDFAGYGPQLVSGTITTIELSLLSLLASFLLGLVGASARLSKN
                     PVYKGIATIYTTIIRGVPDLVLMLLIFYSLQI"
     gene            complement(283..1101)
                     /locus_tag="VEQ16_01230"
     CDS             complement(283..1101)
                     /locus_tag="VEQ16_01230"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP62475.1"
                     /translation="MRKIFRSVVSAACALAVASAPLAAHAKEMHELRFGVDATYPPFE
                     SLSPSGAFQGFDIDLGKAICNELATKCVFISQSFDGIIPALQARKFDAILSSMTVTPE
                     RQQQISFSSEMYNEPTALIVKKGSGLKPTAESLKGKTVGVESGTIQESYAKTYWAPNG
                     VTVVSYPGQDQVYADLLSGRLDASLQDSVEADYGFLRTPKGAGFEFGGDVSSDPKDVL
                     GSYIAIGVRKDDTELLKKIDWAIGELHKKGIYKQLEAKYFNFDVYGATPAPSKS"
     gene            complement(1446..1961)
                     /locus_tag="VEQ16_01235"
     CDS             complement(1446..1961)
                     /locus_tag="VEQ16_01235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HYP62476.1"
                     /translation="MNYGAFTGQAFYQHGAFWVFVAVAIFALVAGRQIARAIAGLLDK
                     RTASVSAALAEAAQLKAEAEAMLADAKDRQKQAEEDAKKILETAHVEAASLAAALAAE
                     AEASAKRRERMALDRIAAAEASALAEIRATAIDVATAASTTLLAETFGPQADAALIDK
                     AIAAAPTALRG"
     gene            complement(1963..2532)
                     /locus_tag="VEQ16_01240"
     CDS             complement(1963..2532)
                     /locus_tag="VEQ16_01240"
                     /inference="COORDINATES: protein motif:HMM:NF012645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HYP62477.1"
                     /translation="MRKLSTATLLLALVPSASFADTMPQMDFANPLTFDQVGWMAVIL
                     VVLYLLLSRWGLPQVGKVLENRAAVIAADLSAARAAKQEADKAVAALNATISQARAVA
                     QAEVAKAVNDAKAKAAAEAATLHASLEAKLDAAEAQIATARAAALAAIKPVAAEAAST
                     ILQKLTGQAPDDAALAPRLDSALAARKVA"
     gene            complement(2532..2768)
                     /locus_tag="VEQ16_01245"
     CDS             complement(2532..2768)
                     /locus_tag="VEQ16_01245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit C family protein"
                     /protein_id="HYP62478.1"
                     /translation="MDPQSAALLAKDIGGGLATIGVAGAGVGIGNLFGAFVSAVGRNP
                     AARDTMFKDVLLGFALTEAVALYALVIALVILFT"
     gene            complement(2832..>3185)
                     /gene="atpB"
                     /locus_tag="VEQ16_01250"
     CDS             complement(2832..>3185)
                     /gene="atpB"
                     /locus_tag="VEQ16_01250"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000276 - mitochondrial
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_component: GO:0045264 - plasma membrane
                     proton-transporting ATP synthase complex, coupling factor
                     F(o) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HYP62479.1"
                     /translation="FYTHGFRYFKFFVPEGVPGWLLPLLVPIEIISYLSRPVSLSVRL
                     FANMTAGHVMWEVFAGFMLLLTASLGILGAFASAVPLGLNVALAALELLVAGLQAYVF
                     AILTCLYLHDAVHMH"
BASE COUNT          598 a          971 c         1077 g          539 t
ORIGIN      
        1 cagatctgca gcgaatagaa gatgagcagc atcagcacca ggtccggcac gccgcggatg
       61 atggtggtgt agatggtggc gatgcccttg tagaccgggt tcttcgacag cctggccgag
      121 gcgccgacca ggccgagcag aaaggaggcg agcagggaca ggagcgacag ctcgatcgtc
      181 gtaatcgtgc ccgacaccag ctgcggacca tatccggcga aatcgaacat gaatgttccc
      241 taaaagcggc cggccccggt ggtaccgggg ccggtgcgcg gatcagctct tggagggcgc
      301 gggcgtggcg ccgtacacgt cgaaattgaa atatttcgct tcgagctgtt tgtagatgcc
      361 cttcttatgg agctcgccga tggcccagtc gatcttcttc agcagttcgg tgtcgtcctt
      421 gcgcacgccg atggcgatat aggagcccag cacgtccttc ggatcgctgg agacgtcgcc
      481 accgaactcg aaaccggcgc ccttcggcgt gcggaggaag ccataatcag cctcgaccga
      541 atcctgcagc gaggcgtcca ggcggccgga aagcaggtcg gcatagacct ggtcctggcc
      601 gggataggac acgaccgtca cgccattggg cgcccagtag gtcttggcat agctctcctg
      661 gatggtgccg gattcgacgc ccaccgtctt gcccttgagg ctctcggccg tcggcttcaa
      721 accggagccc ttcttcacga tgagggcggt tggctcgtta tacatttcgg acgagaagct
      781 gatctgctgc tggcgttccg gcgtaacggt catcgaggac agaatcgcat cgaacttgcg
      841 cgcctgcagg gccggaatga tgccgtcgaa gctctgcgaa atgaacacac acttcgtggc
      901 cagctcgttg cagatcgcct tgccgagatc aatgtcgaaa ccctggaagg cgccggaggg
      961 ggacaggctc tcgaacggcg ggtaggtggc atcgacgccg aaccggagct catgcatctc
     1021 cttggcatgc gcagccagag gcgcggacgc aacagccagc gcacaggcgg cactgacgac
     1081 agaccggaag atttttctca ttttgcgacc cccatgttga aagtttcgca tcgatgcgcc
     1141 catcgcaggg atgccatccc aagcttaacc gattcgccgc actgcgcaac ggtgcctgga
     1201 cgaataggtt aggggtgtga cccaaggggg acgctgtccc ccttgccccc ctgccagggg
     1261 ccgaaaggcc cctggacccc gcccggcact ggaaaaaggg gagaccctgc ccggttatgt
     1321 gcaagcacgt tgtgcttgca cataaccggg cagggtctcc cctttttcca gtgccgggcg
     1381 gggtctgggg cctcaggccc cagcttgggt ccagggggca gagccccctg ggtcactccc
     1441 ggaacttatc cgcgcagtgc cgtcggcgca gcggcgatgg ctttgtcgat cagcgcagcg
     1501 tcggcctggg ggccgaatgt ttcggccagc agggtggtgg aggcggcggt ggcgacatcg
     1561 atggcggtgg cgcggatttc ggccaaggcc gaggcttccg ccgcggcgat ccggtcgagg
     1621 gccatgcgtt cgcggcgctt ggcggaagct tccgcctcgg cagccagggc ggcggcgagg
     1681 ctggcggctt cgacatgcgc ggtttcgagg attttcttgg cgtcttcctc ggcttgtttc
     1741 tggcggtcct tggcgtcggc cagcatggct tcggcttcgg ctttcagctg tgccgcctca
     1801 gccagggccg cgctgacgct ggcagtacgc ttatcgagca agccggctat ggcgcgggcg
     1861 atctggcgcc cggcgaccaa agcgaagatg gcaacggcaa caaaaaccca gaacgcgcca
     1921 tgctggtaga aggcctgccc ggtgaaagct ccgtaattca tgttacgcca ccttccgtgc
     1981 tgccagggcg ctgtcgaggc gcggcgcgag ggccgcgtca tccggcgcct ggcctgtgag
     2041 tttctgcagg atggtgctgg ccgcctcggc cgcgacgggc ttgatggcgg cgagcgccgc
     2101 tgcccgcgcg gtggcgattt gcgcttccgc cgcgtccagc ttggcctcga gcgaggcgtg
     2161 cagcgtggcg gcttcagcag cggctttcgc cttggcatcg ttgaccgcct tggccacctc
     2221 ggcctgcgcc acggcacggg cctgggagat ggtggcgttc aacgccgcca cggccttatc
     2281 ggcctcctgc ttggcggcgc gggcggcgga aagatcggcc gcgatgaccg cggcgcggtt
     2341 ttccagcacc ttgccgacct ggggcaggcc ccagcgcgac agcagcagat acagcaccac
     2401 gaggatgacg gccatccagc ccacctggtc aaaggtgagc gggttggcga aatccatctg
     2461 cggcatggta tccgcgaatg aggcggaggg caccagggcc agcaggaggg ttgcggtgct
     2521 gagcttgcgc attaggtgaa caggatgacc agcgcgatga ccagcgcgta gagcgcgacc
     2581 gcttccgtca gcgcgaagcc gagcaacacg tccttgaaca tggtgtcgcg cgcggccggg
     2641 ttgcggccga cggcggacac gaacgcgccg aacagattgc cgataccaac gcccgcaccg
     2701 gcaacgccga tggtggcaag gccaccgcca atatctttcg cgagcagagc ggcagactgg
     2761 ggatccatgt aactttcctt tccgaagaac tctttatggt gaagtcttag tgcatatgca
     2821 cggcatcatg cctagtgcat gtgaacggca tcgtgcagat acaggcaggt gaggatggca
     2881 aacacatagg cctgcagccc cgccaccagc agctcaagcg cggcaagcgc cacattgagc
     2941 cccagcggca ccgccgaggc aaaggcgccg aggatgccga gcgaagcggt gagcagcagc
     3001 atgaagccgg cgaacacctc ccacatcacg tgtccggccg tcatgttggc gaaaagacga
     3061 acggagagcg aaacgggacg cgagaggtag gagatgatct cgatgggcac cagcagcggc
     3121 aacagccagc cgggcacacc ctcgggcacg aagaatttaa agtagcggaa accgtgcgtg
     3181 tagaa
//
LOCUS       DASQCV010000087         5723 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_347424, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000087 DASQCV010000000
VERSION     DASQCV010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5723
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347424"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1200)
                     /locus_tag="VEQ16_01255"
     CDS             complement(<1..1200)
                     /locus_tag="VEQ16_01255"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYP62480.1"
                     /translation="MAQGQQDGVQDCDVLVVGGGPAGASVAALLAERGRRVVLVEKDR
                     HPRFHIGESLLPHNLPLLDRLGVRAQIETSGQHKHGIEFVSPFHGKSVRYDFAKAWDK
                     RFPYAFQVRRSVFDEILFRNAAAKGAEVIEECRVTSVDLTQERPLVTAGERRWRARFV
                     VDASGRDTLLASQLNAKARNPRNDSAAIFGHFTGARRLEGQAEGNITIVWFDKGWFWF
                     IPLADGTTSIGAVCPAGVFKNRGTDLQSFFMGLIASSPEIADRLKDATLVGEVTATGN
                     YSYESKITSGRNYLMAGDACAFIDPVFSTGVYLAMKTGFWAAEAVEACLEKPQAASRV
                     LKRYDALTRRALGSFTWFIYRIREPAMRNLFMSPRNIFRLEEAVLSLLAGGIFEGWGI
                     RLRLYLFR"
     gene            1358..2650
                     /locus_tag="VEQ16_01260"
     CDS             1358..2650
                     /locus_tag="VEQ16_01260"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HYP62481.1"
                     /translation="MTPPALNPQQATETLLFSILIQLAIMIGAARLMSAAFRRLGQPG
                     VIGEIVAGLLLGPSLFGHFCPHLSAAIFGAKPAPSIVILSQIGLILLMFQIGMSFEFT
                     HLRQPRAQRALLPLAAASVLVPLACGIWLGHLSAPLYAGGIAVPVYALFCGVAVAITA
                     VPILGRILDGYGLTQHELGVLAISAAALNDVTGWVLLAAISAIATATFAPSHLALQLA
                     GLVAFAFVCFLLLRPAAERLLKSFPINNGEVPPTLMSILLIAVFFLGMCTEKLGVFSI
                     FGGFIGGLLVHHDTAFVAAWRRQVGGFVLIFFLPVFFTFTGLHTNLLGLTTGTDWLWL
                     ALFCAVSIGAKIIPVALVSRFAGYDSNSSLLLGVLMNTRALMELIVLNIGLETGFLPQ
                     KIFTMLVIMAVVTTLMAGPALKFLLPRLGLPIPANIEA"
     gene            complement(2687..3706)
                     /locus_tag="VEQ16_01265"
     CDS             complement(2687..3706)
                     /locus_tag="VEQ16_01265"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HYP62482.1"
                     /translation="MSSNKPAGSLASEDLQLGILRPYQAPVFGTALMQAISTFGLYIA
                     CTVAMYISLRVSAWITLALAIPASGLIVRIFMLQHDCGHNSFFRSRRLNLIVGTACSL
                     VTFTPFAYWRRLHARHHRSWNNLDDRGIAADFFSDCATVAEYQAMTRAQKTVYRLTHH
                     PILVHLLLPPIVFILVYRLPFDMPPACRRERVSVYLLNLALMIVLGGLIMAFGIKTVL
                     LVHLPAIVLAAIVGIWLFSVQHRFEDAHWARQTDWTSTRASLHGASYLKLPALLQWFS
                     GNIGLHHVHHLRPGIPNYRLQACHDECPAVTAGVTMLTLKEALKAPSYILWDEDLNCM
                     VPLPS"
     gene            complement(3887..4864)
                     /locus_tag="VEQ16_01270"
     CDS             complement(3887..4864)
                     /locus_tag="VEQ16_01270"
                     /inference="COORDINATES: protein motif:HMM:NF044415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62483.1"
                     /translation="MPSSSLPHDEQRPAPLLHLRYASRFEAAEHVLGVIGFGAGRPAG
                     LAAETPFIQAPLSPLSGGAAYEIWQADAPVRPLRVGPVQGAYNEELAFGAVRIDEAGL
                     SPEDATERAYEAIFEFLARTGCAEPIRFWNYLGDILGEVDGLERYRRFNIGRHRAFLR
                     HLRQAVPPAASGVGGHGASVIYVLAAREAARAVENPRQVSAYDYPPQYGPRSPGFSRA
                     GLFGGALFVSGTASIVGHETRHEGDAAAQAAETAANLRALITAAGLEKALGRGEGWAL
                     KAYLRVAADREVLAPVLADLFGAGAEILYLHGEICRADLALEVEAFYRA"
     gene            complement(4944..>5723)
                     /locus_tag="VEQ16_01275"
     CDS             complement(4944..>5723)
                     /locus_tag="VEQ16_01275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter"
                     /protein_id="HYP62484.1"
                     /translation="GMALPLWYVDAGLSVLVGLVVPLAMILRQSHRLEQMTAVWLLPI
                     VASEVAAASAGQLAPHLAGPAALEVLLAGYGLWALSVPLALSVLVILFLRLVLHKLPH
                     EDMAVSGWLAVGPLGTGALALLLLGRDAPAILGGDAGVAAHGLGLIGGLLLWAYGAWW
                     LLMAVAMTCAYLPRRLPFNMGWWGFTFPLGVFCSASFALGAQTGLGIFFTLGVALTAL
                     LGVLWLLVGLRTLQGALSGALFFSPCISHKPEAAPQLVPAR"
BASE COUNT         1131 a         2044 c         1581 g          967 t
ORIGIN      
        1 gcggaacaga taaagccgca gccttatccc ccagccctcg aaaatcccgc ccgccagcag
       61 cgacagcacc gcttcctcca gccggaatat attgcgcggc gacatgaaca gattgcgcat
      121 cgccggctcg cggatgcggt agatgaacca ggtgaacgac cccagcgccc tgcgcgtcag
      181 cgcgtcataa cgcttcaaca cccgcgaagc cgcctgcggc ttctccaggc acgcctccac
      241 cgcctccgcc gcccagaagc cggtcttcat cgccagatac acgccggtcg agaacacagg
      301 gtcgatgaag gcgcaggcat cgcccgccat caggtaattg cgcccgctgg tgattttcga
      361 ttcgtaggaa taattccccg tcgccgtcac ctcacccaca agcgtcgcat ccttcagcct
      421 gtcggcgatt tccgggctgg aggcgatcag ccccatgaag aaactctgca gatccgtgcc
      481 acggttttta aacacccccg ccgggcacac cgcgccgatg ctggtcgtgc cgtcggcgag
      541 cggaatgaac cagaaccagc ctttatcgaa ccaaacgatg gtgatattcc cctccgcttg
      601 cccctccagc cgccgcgcac cggtaaaatg accaaaaatg gcggcgctgt cattgcgcgg
      661 attgcgcgcc ttggcgttga gctggctggc cagcagcgta tcgcgcccgg acgcatccac
      721 cacaaaccgc gcccgccagc gccgctcgcc tgccgttacc agcggcctct cctgcgtcaa
      781 atccacggac gtcacgcggc attcctcgat cacctccgct cccttggcgg cggcattgcg
      841 gaacaaaatc tcgtcaaaca ccgagcgccg cacctggaac gcatagggaa agcgcttgtc
      901 ccacgccttg gcgaaatcat accgcacgct cttgccatga aaaggcgaga cgaactcgat
      961 gccatgctta tgctgcccgc tggtttctat ctgcgcgcgc acccccaagc ggtccagcaa
     1021 cggcagatta tgcggcagca gcgattcgcc gatatggaag cgcggatgcc tgtccttttc
     1081 caccagcacc acgcgccgcc cgcgctcggc cagcaaagcg gccacgctgg cgccggccgg
     1141 cccgccgccc accaccagaa catcgcaatc ctgcacaccg tcctgctgcc cctgcgccac
     1201 gcgccgctcc ttcccgccct tgcacggttc cgggcgttga cccgtttgcc atatcagccg
     1261 atgaagggcc cctccaggat aagccacagc tccgccgcca tgtccaacct ctcctggtta
     1321 tcccctccat ctagccgatg aaagcctgcc gcgccgcatg acgccccccg ccctcaaccc
     1381 gcaacaggcc accgaaaccc tgctcttctc catcctcatc cagctcgcca tcatgatcgg
     1441 cgcggcacgg ctgatgagcg ccgccttccg ccgcctcggc cagccggggg tgatcggcga
     1501 aatcgtcgcc ggcctgctgc tcggcccctc tctgttcggc catttctgcc cgcatctctc
     1561 ggccgccatt ttcggcgcca agccggcgcc ctccatcgtc atattgtcgc aaatcgggct
     1621 catcctcctg atgttccaaa tcggcatgag cttcgagttc actcatctgc gccagccccg
     1681 cgcccagcgc gcgctcctgc cgctggccgc cgcctcggtg ctggtgccgc tcgcatgcgg
     1741 catctggctc gggcatctct ccgcgcccct ttatgccggc ggcatcgccg tgccggtcta
     1801 tgccttgttc tgcggcgtgg cggtggcaat caccgccgtg cccatccttg gccgcatcct
     1861 cgatggctac gggctgaccc agcacgagct gggcgtgctc gccatctccg ccgccgcgct
     1921 caacgatgtc acgggctggg tgctgctcgc ggcaatatcc gccatcgcca cggcgacctt
     1981 cgcgccctct catctcgcgc tgcagctcgc ggggcttgtg gcattcgcgt tcgtctgttt
     2041 cctgctcctg cgccccgcgg cggaaaggct gcttaaatca ttccccatta acaatggcga
     2101 ggtcccgccg acgctgatgt ccatcctgct tatcgccgtg ttcttccttg gcatgtgtac
     2161 cgagaagctc ggcgtgttca gcattttcgg tggcttcatc ggcggccttc tggtgcatca
     2221 cgacactgcc ttcgtcgccg cctggcgccg ccaggtgggc gggttcgtgc tcatcttttt
     2281 cctgcccgtc ttcttcacct tcaccggcct gcacaccaac ctgcttggcc tcaccaccgg
     2341 cacggactgg ctctggctgg ccctgttctg tgccgtctcc atcggagcaa aaatcatccc
     2401 cgtcgccctg gtcagccgtt tcgcgggcta tgacagcaat tcgtccctgc tgctgggcgt
     2461 gctgatgaat acgcgcgccc tcatggagct tattgtcttg aatatcgggc tcgagacagg
     2521 cttcctgccg cagaaaattt tcaccatgct ggtcatcatg gcggtggtca ccacattgat
     2581 ggcaggcccg gcgctgaaat ttctgcttcc ccggctgggg ctgccgattc cggcgaacat
     2641 cgaggcctga gccgggacct cttcgaggcg cccgccatgc cccggtttat gacggcaagg
     2701 gaaccatgca gttcagatct tcatcccaaa gtatgtagct cggtgcctta agcgcttcct
     2761 tcagggtcaa cattgtcacc ccggctgtca cggccgggca ttcatcatgg caagcctgca
     2821 gccggtagtt tggaatccca ggacgcagat gatgtacatg gtgcaagccg atattcccgc
     2881 tgaaccattg cagcagggcg ggcaatttca aataagatgc cccgtgcaaa gatgccctgg
     2941 ttgaagtcca atcggtttga cgcgcccaat gcgcatcctc aaaccggtgt tgcaccgaaa
     3001 acagccagat accaacgatt gcggccagaa cgatggcggg aagatgcaca agcaataccg
     3061 tcttgatgcc gaacgccatg ataaggccgc ctaagacgat cataagcgcc aggttcagca
     3121 gatacacgct cacgcgttcg cgcctgcagg caggcggcat atcgaaaggc aggcggtaga
     3181 ccaaaatgaa aacgatcggc ggcaataata aatggaccag aatgggatga tgggtgaggc
     3241 gatagaccgt cttttgagcg cgtgtcatcg cctgatactc tgccaccgtt gcgcaatccg
     3301 aaaaaaaatc ggcggcaatt ccacggtcgt caagattatt ccagcttcga tgatgccggg
     3361 cgtgaagcct gcgccaatac gcaaacggag tgaaggtgac gaggctgcag gcggttccaa
     3421 caatgaggtt gagacggcgg gaccggaaaa acgagttatg gccgcaatca tgttgcagca
     3481 tgaaaatacg gacgatcagt ccgctggccg ggatggccag ggccaaagtg atccaggcgg
     3541 agactcgcag actgatatac atcgccaccg tacaggcgat gtagaggccg aatgtcgata
     3601 tggcttgcat cagggcggta ccgaatacag gggcctgata tggccgcaat atgccaagtt
     3661 gcaggtcttc agacgccagg ctcccggcgg gtttgttcga cgacaaacgg actcctagct
     3721 tcagacagag gctgcaatca tctgatgtta caaaggacga agaggaaaca ttatattatg
     3781 gcagtgcgag ccttcctggg ctaaccgctt tacgcgccat atgcaaggcg gctcggcaaa
     3841 ttgtcatttg ttgcagcccc gcgggttgcc ctaggccgcc agccggttat gcccggtaga
     3901 acgcctccac ctccagcgcc aaatccgccc ggcaaatctc gccgtgcaaa tataaaattt
     3961 ccgcgcccgc cccaaacaaa tccgccagca cgggcgccag aacctcgcgg tccgccgcca
     4021 cacgcagata agccttcagc gcccagccct cgccccgccc cagcgccttt tccagccctg
     4081 ccgcggtaat cagcgcccgc aaattcgccg ccgtctccgc ggcctgcgcc gcggcatcgc
     4141 cctcatggcg cgtctcatgc ccgacaatgc ttgcggttcc cgaaacaaac agggcgccgc
     4201 caaacagccc ggcgcgggaa aagccggggc tgcgcggccc atattgcggc ggataatcgt
     4261 aggcgctcac ctggcgcgga ttctccaccg cccgcgccgc ctcgcgcgcc gccagcacat
     4321 aaatcaccga tgcgccatgc ccgcccacgc cgctcgccgc cggcggcacg gcctggcgca
     4381 gatggcgcaa aaacgcgcgg tggcggccga tattaaagcg ccggtagcgc tccagcccgt
     4441 ccacctcacc cagaatatcg cccagataat tccagaaccg aattggctcg gcacagcccg
     4501 tccgcgccag aaattcgaat atcgcctcat aggcgcgctc cgtggcgtcc tccggcgaca
     4561 gcccggcctc atcgatccgc accgcgccaa aggccagttc ctcgttataa gccccctgca
     4621 ccggccccac gcgcaagggc cggacaggtg catcggcctg ccagatctca taagccgcgc
     4681 cacccgaaag cgggctcagc ggcgcctgga tgaagggcgt ctccgccgcc agtcccgccg
     4741 gccgcccggc gccgaagcca atgaccccca gcacatgctc cgccgcctca aaccggcttg
     4801 catagcgcag atgcaaaagg ggcgcgggcc gctgctcatc atgcggcagg gacgaggacg
     4861 gcaaggcaac tccttaaaac gcggcagctt cagcatgctg cccgccggga gtctcgcggc
     4921 ttttgcctgg cgaggcaagg cccttaccgc gccggcacca gttgcggcgc ggcctctggc
     4981 ttatggctga tgcaaggcga gaaaaacagc gccccgctca acgccccttg cagcgtgcgc
     5041 aaacccacca acagccatag cacgccgagc aatgcggtca gcgccacacc cagggtgaaa
     5101 aaaatcccca agcccgtctg cgccccaagg gcaaaactcg cggagcaaaa aacgccgagc
     5161 gggaaggtga agccccacca gcccatattg aagggcaggc ggcgtggcag ataggcgcag
     5221 gtcatcgcca ccgccatcag cagccaccag gcgccatagg cccatagcag cagcccgccg
     5281 atcaatccca gcccatgcgc cgccaccccg gcatcgccgc ccagaatggc gggtgcatcg
     5341 cgccccagca gcagcagcgc cagcgctccg gtgccgagcg gccccactgc cagccagccg
     5401 gacaccgcca tgtcctcatg cggtagctta tgcagcacca gccgcaaaaa caggatgacc
     5461 agcaccgaca gtgctagcgg cacggacaaa gcccacaacc cataccccgc caacagcacc
     5521 tccagcgccg ccggcccagc cagatgcggc gccagctgcc cggcactcgc cgccgccacc
     5581 tcggacgcca cgatcggcag cagccacacc gccgtcatct gctcaagccg gtgcgactgg
     5641 cgcaggatca tcgccagcgg cacaaccagc cccaccagca ccgaaagccc ggcatccaca
     5701 taccaaagtg gcagggccat gcc
//
LOCUS       DASQCV010000088         3603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_347744, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000088 DASQCV010000000
VERSION     DASQCV010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3603
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347744"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(153..503)
                     /locus_tag="VEQ16_01280"
     CDS             complement(153..503)
                     /locus_tag="VEQ16_01280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62485.1"
                     /translation="MLKDILTAILWRHHFGRRLLDFRATPGMRLLPKGRLAMKDHGRL
                     LQAPAPLSSDYAMAGAAIAARLAGAAAEDLPPLSPFFLRRPRRWQQIVTARAHAASLR
                     LLTGHSTHKTTAGG"
     gene            771..905
                     /locus_tag="VEQ16_01285"
     CDS             771..905
                     /locus_tag="VEQ16_01285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62486.1"
                     /translation="MLEVNAEDRTTLTTLPVLGTYVPVSYPNIAKLAMADPGLVPRCS
                     "
     gene            994..1164
                     /locus_tag="VEQ16_01290"
     CDS             994..1164
                     /locus_tag="VEQ16_01290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62487.1"
                     /translation="MFGGPCKFVLGSSVVLIAGQAAAFVGSTIGQNGVPSAKMPMAIQ
                     VMPSQENVRVAP"
     gene            1289..2176
                     /locus_tag="VEQ16_01295"
     CDS             1289..2176
                     /locus_tag="VEQ16_01295"
                     /inference="COORDINATES: protein motif:HMM:NF022457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kdo hydroxylase family protein"
                     /protein_id="HYP62488.1"
                     /translation="MQVVESLSGGTMAEMSAHSAQAALALEQGHVLAFPDQTFPLSEA
                     ERALIAAGASHGNTKNISFSPETRSLKGDNLAPEEQECLACMMARFGAFAETLVLAIA
                     PGYELGLERGRTSFRPVEIAGRETSWRKDDTRLHVDAFPSTPAQGRRILRVFANVDQN
                     GTPRRWRITPDFGAHAARFLPRLSGLHVPGAAYFMALTGITKSRRTLYDEMMLGLHDA
                     AKRDMVWQETVAAEEVVFEPGEVWVVFTDRVFHAALSGRNALEQTFYVAPEVLAEPAE
                     APLAILARLAKRDERKMLT"
     gene            complement(2392..2796)
                     /locus_tag="VEQ16_01300"
     CDS             complement(2392..2796)
                     /locus_tag="VEQ16_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HYP62489.1"
                     /translation="MIPYLKCMLVVAATAGLPPRVLPVIQSLEGGTAGLVRPDTNGTA
                     DLGVMQVNTIWVPALAARAGLSEAETQNRLVDDPCFNIAAAALILHAYLAETHGALLP
                     AIGDYHSHTPALNNGYADLAVRRAGEMFEGGS"
     gene            2894..3349
                     /gene="gspG"
                     /locus_tag="VEQ16_01305"
     CDS             2894..3349
                     /gene="gspG"
                     /locus_tag="VEQ16_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HYP62490.1"
                     /translation="MKFSYKSSNLSKASYKEDGFTLLELLVVIVILGLLIGLVAPAVL
                     RQLGHAKDSVARQSIARIGSVLDLYKLDAGTYPSTQDGLQALITKPDDDSNWAGPYLK
                     GSNLPLDPWGHPYLYQQPSSRPGLDYDLCSLSSADKPGQPGDPGLICNQ"
     gene            complement(3343..>3603)
                     /locus_tag="VEQ16_01310"
     CDS             complement(3343..>3603)
                     /locus_tag="VEQ16_01310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62491.1"
                     /translation="TAALPYLSLYASGDPDPSISSAVIRRALALSGQTGTSDNSYSGN
                     APVVAITARLQGGNGLSLQRQAIVSLPGTPQPFQFLSRSGGY"
BASE COUNT          728 a         1056 c         1125 g          694 t
ORIGIN      
        1 gtatcgagat cgggaaagag cgtatgggcc aattcaaggt tattcgcatc gacaaacaac
       61 cggacatccg ggacacggca cgcaagataa cgaacggctg gcgcggcaag gatgaggtcg
      121 ccaatatgat ccggcttcaa aatacctagc actcaacctc ctgccgtcgt tttgtgagta
      181 gaatggccgg tcaataaccg caagctcgcg gcgtgcgccc tggctgttac aatttgctgc
      241 cagcgccggg gacggcgcag gaaaaaggga gagagcggtg gcagatcctc ggcggcggca
      301 ccggccagcc ttgccgcgat ggccgcgccg gccatggcgt agtctgacga aagcggcgct
      361 ggcgcctgta gcagacggcc atggtccttc atcgccaacc tcccctttgg caacagcctc
      421 attccaggag tggcgcgaaa atccaacaat ctacggccga aatggtgacg ccagagtatc
      481 gccgtcaaga tgtctttgag catagacctc acctttttga tgcgccgatt cgcataaaac
      541 taggtatcaa gcatctgatg caaatcaaaa caacttaaag ttgatttttg ctttggccca
      601 ggctagagac gaaaaaaagc ccagcatgca gataaggcgc ccgcatgaat aaatttttag
      661 aaatgattta ggaagggcct cgatcatcag aactccagcg tcaaaaccag attataacaa
      721 attaaaaggc tagatatgtc ttaccaatac cttaagtttt gtgcggagct ttgcttgagg
      781 tgaatgccga ggaccggacc acgctcacca ctctgccagt gctaggcacc tatgtgccgg
      841 tgtcctatcc caatatcgcg aagctggcca tggccgatcc ggggcttgtt ccgaggtgct
      901 catgatcatg gacatgccgg cggcgacagt ggagaggtag ctcaggatat cgaaaggtga
      961 tgatagggca cgggcggcag cgtcatttcc ggcatgttcg gcggaccgtg caaattcgtg
     1021 ctcggcagca gtgtcgtcct catcgcgggc caggcggccg cgttcgtggg cagcaccatt
     1081 ggccagaatg gcgtgcccag cgccaaaatg ccgatggcga tacaggtgat gccaagccag
     1141 gagaacgtcc gggttgcgcc gtagccgagg gcattcctga tggtattcta aaatttcatt
     1201 aaagttttcc ccgctttcga agcgcgatca aaatggtcta gcctgcaacc tgcgcatttg
     1261 gtcttgcaat ccggcaggag gcttggtcat gcaggtagtg gagtcattat ctggcggcac
     1321 gatggcggaa atgtccgccc attcggcaca ggctgccctg gcgcttgagc agggccatgt
     1381 cctcgctttt cccgaccaga ccttcccgct gagcgaggcg gagcgggcgc tgatcgccgc
     1441 tggtgcatcg catgggaata caaagaacat cagcttctcg cctgagacca gatcgttgaa
     1501 aggggacaat cttgcccctg aggagcagga gtgcttggcc tgtatgatgg cgcgtttcgg
     1561 cgcctttgca gagacgctgg tcctggctat cgcgcccggc tacgagctgg ggctggaacg
     1621 aggccggaca agtttccggc ctgtggagat tgccggacgg gagacttcct ggcgcaagga
     1681 cgatacgcgg ctgcatgtgg atgcgtttcc ctccaccccg gcgcaggggc ggcggattct
     1741 acgcgtcttc gccaatgtgg accagaatgg cacaccgcgg cgttggcgca tcacgccgga
     1801 ttttggcgcc catgcggcgc gcttcctgcc acgcctttcc ggcttgcatg tgccgggcgc
     1861 ggcctatttc atggcgctca ccggcattac caaatcccgc cgcacgctct atgacgaaat
     1921 gatgctcggc ctgcatgacg cggctaagcg tgacatggtc tggcaggaga cggtggcggc
     1981 cgaggaggtg gtgtttgaac ccggcgaggt ctgggtggtg ttcaccgaca gggtgttcca
     2041 cgccgccttg tccggccgca acgcgctgga gcagacattt tatgtggcgc cagaggtgct
     2101 ggcggaaccg gcggaggcac cgcttgccat cctcgcgcgg cttgcaaagc gcgacgagcg
     2161 gaaaatgctt acctgaagca ggggcgcctt cagtcagcct gaaagcgcca gcttttgtca
     2221 gacctgcggc gagacgcgcg aggtgacagc gtgtttcagc acgccgcgtg tctcgatgcg
     2281 gaaggcccag gtggttaggg tgccgagcag cgaagcgacg atgagttccg gcatgtcgtg
     2341 tctgccgccg atgtgacgat gccagcgtgg cctcatccgg cccgttaaaa cctagctgcc
     2401 accctcgaac atctcaccgg cccggcgcac cgccaggtca gcgtaaccgt tgttcagcgc
     2461 cggtgtatgg gagtgataat cgccgatggc gggcaacagc gcgccatggg tttcggcaag
     2521 ataggcgtgc aggatcagcg ccgctgcggc gatgttgaag caggggtcat ccacaagccg
     2581 gttctgcgtc tcggcctccg agagcccggc ccgcgcggcc aaagctggca cccaaatcgt
     2641 gttcacctgc atcacgccga gatccgccgt gccgttcgta tcgggccgca ccaggcccgc
     2701 cgtgccgcct tccagcgatt ggatgacggg cagcacacgc ggcggcaatc ctgccgtggc
     2761 cgcaacgacc agcatgcatt tcaggtaagg gatcacgtcc cggctccaaa tcacagcagc
     2821 ggaggtttcc cccctcgacg cgcgatgtta tagccgcgcc gcataaagag caaagcgggt
     2881 agccatgacc gtcatgaaat tttcatataa atcctcaaat ctttccaagg cgtcgtataa
     2941 ggaggatggc ttcacgctgc tcgaactgct cgtcgtcatc gtcattctcg gcctgctcat
     3001 cgggctcgtt gcacccgcgg tgctgcgcca gctcggccat gcgaaggatt cggtggcgcg
     3061 ccaatccatc gcgcgcatag gctctgtgct cgatctctac aagcttgatg ccggtaccta
     3121 tcccagcacg caggacggac tgcaggcgct catcaccaag ccggacgacg attccaattg
     3181 ggctggcccg tatctcaaag gcagcaatct gccgctcgac ccgtgggggc atccttatct
     3241 gtaccagcag ccctcgtcgc gtccggggct cgattatgat ctctgctcgc tcagcagcgc
     3301 cgacaagccg ggccagccgg gcgaccccgg gctgatctgt aatcaatagc cgccggaacg
     3361 cgagaggaac tggaagggct gcggcgtgcc aggcaggctc acgatggcct ggcgctgtag
     3421 gctgagcccg ttgccgccct gtagccgtgc cgtgatggca accactggcg cgttgccgct
     3481 ataggagttg tcgctggtgc cggtctggcc tgagagggcc agagcgcgcc gtatcacggc
     3541 gctggagatg ctaggatcgg gatcgcccga ggcatagagg ctcagatagg gcagggccgc
     3601 ggt
//
LOCUS       DASQCV010000089         2999 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2006162, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000089 DASQCV010000000
VERSION     DASQCV010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2999
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2006162"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..427)
                     /locus_tag="VEQ16_01315"
     CDS             complement(<1..427)
                     /locus_tag="VEQ16_01315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HYP62492.1"
                     /translation="MSDSDISNMSEMSMIQAIHSALDVMLARDPNVLIFGEDVGYFGG
                     VFRATDGLQAKYGPTRCFDTPLSEGGIVATAIGMGAYGLRPVVEIQFADYILPAYDQL
                     VSEAARLRYRSGGEFWAPITVRAPYGGGIYGGQTHSASPE"
     gene            complement(424..1659)
                     /locus_tag="VEQ16_01320"
     CDS             complement(424..1659)
                     /locus_tag="VEQ16_01320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020592143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HYP62493.1"
                     /translation="MRNQPPLSLHIPVPHARPGEKPDFSYLTFPEAGALRCPDWLTPE
                     AEMRDLPYSLIRVLAKDGQAVGPWDPRLAPDILRRGLRAMMLTRIFDDRMFTAHHQGK
                     TSFYMKSTGEEATAIAPSLALLPSDMCFPTYRMTGFLVARDYPLKNMVNQIFANAEDP
                     MRGRQLPLLYSARDYGFYTLAGNVGSRFGHAVGWAMASAYKNDDKIAMAFVGDGTTAE
                     GNFHEAMVFASVYHAPVILCVTNNQWAISSYQGIAGGEETTFAARGIGYALPGLRVDG
                     NDFLAVYSATQWAAERARANHGATLIEFVTYRVAGHSTNDDPSRYRPSDEASAWPLGD
                     PIERLKTHLITIGEWSEQQHEALARELHEQVRAAAKAGEALGTLGQNPPPKREMFEHV
                     FKEPDWRNLEQRREAGIAS"
     gene            complement(1802..2497)
                     /locus_tag="VEQ16_01325"
     CDS             complement(1802..2497)
                     /locus_tag="VEQ16_01325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012977262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
                     /protein_id="HYP62494.1"
                     /translation="MFPHMPASFVAFLTAFLLGTLIGAERQWRQRSAGLRTTVLVALG
                     AAAFADLGVELAGPEGATRIVAYIVSGIGFLGAGVILKDGANIRGLNTASTLWCSAAV
                     GAFSGCGYPAQAALLTFFVLAGNTLLRPLVNYINRRPVDAATTEAQYTVHATCRPENV
                     PDVRDLLFDALEAAHYPVREVAVLTESEDLMELGATLVASSAAANELDQVVATLEAAP
                     IVKTATWTVSAVT"
     gene            complement(2511..2708)
                     /locus_tag="VEQ16_01330"
     CDS             complement(2511..2708)
                     /locus_tag="VEQ16_01330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62495.1"
                     /translation="MSYYDKDSEEALAALAQEENWLAPPMEIGRVVLRPWQQMVFWGL
                     RIYILVMLAVMGWGFYRSLNH"
     gene            complement(2717..>2999)
                     /locus_tag="VEQ16_01335"
     CDS             complement(2717..>2999)
                     /locus_tag="VEQ16_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013635086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HYP62496.1"
                     /translation="PFYAPAILGTAIAAAVLMLPNVPVGFLNLTVQVIATVFMPAAML
                     FLLMLLNDRELLGEHVNSPLRNALSIGVMVLLIICNGLYGLVTVFPNAL"
BASE COUNT          555 a          927 c          986 g          531 t
ORIGIN      
        1 cctcggggct ggcgctatgc gtctgcccgc cataaatgcc gccaccataa ggcgcgcgca
       61 ccgtgatggg cgcccagaac tcgccgccgg agcggtagcg cagccgcgcc gcttcggaaa
      121 cgagctggtc ataggccgga agaatgtaat cggcgaactg gatttccacc accgggcgca
      181 ggccataggc gcccatgccg atggccgtgg cgacgatgcc gccctcggac aatggcgtgt
      241 cgaaacagcg cgtcggcccg tatttggcct gcaacccgtc cgtggcgcgg aacacaccgc
      301 cgaaataccc cacatcctcg ccgaaaatga gcacgttggg gtcgcgcgcc agcatcacat
      361 cgagcgcgga atggatcgcc tggatcatgc tcatttcgct catgttgctt atatcgctat
      421 cgctcatgac gcgatcccgg cctctcgcct ttgttccagg ttccgccagt ccggctcctt
      481 gaagacatgc tcgaacattt cgcgtttggg cggcgggttc tggcctaacg tgccgagcgc
      541 ctcgcccgcc ttggcggcgg cgcgcacctg ctcgtgcaac tcccgcgcca gggcctcatg
      601 ctgctgctca gaccattctc caatcgtgat gagatgggtc ttcagccgct cgatgggatc
      661 gcccagcggc caggcgctgg cttcgtccga cgggcggtag cgggacggat cgtcgttggt
      721 ggaatggccg gcgacgcggt aggtgacaaa ttcgatgagc gtagcgccat ggttggcgcg
      781 ggcgcgctca gcggcccatt gcgtggcgct atacacggcg aggaaatcat tgccatcgac
      841 acgcagcccg ggcagtgcgt agccgatgcc gcgcgccgcg aaggtggtct cctcgccgcc
      901 ggcaatgccc tggtagctgg aaatggccca ttgattgttg gtgacgcaga ggatgaccgg
      961 cgcgtgatag accgaggcga acaccatcgc ctcatgaaaa ttcccctccg ccgtggtgcc
     1021 gtcaccgaca aaggccatcg cgatcttgtc gtcattcttg taggccgagg ccatggccca
     1081 gcccaccgcg tggccgaaac ggctgccgac attgccggcc agcgtgtaga acccataatc
     1141 gcgtgccgaa tagagcagcg gcaattgccg gccccgcata ggatcttccg cattggcgaa
     1201 aatctggttg accatgtttt tcagcggata atcccgcgcc acgagaaaac cggtcatgcg
     1261 gtatgtgggg aagcacatgt cgcttggcag cagcgcgagc gaaggggcaa tcgcggtggc
     1321 ctcctcgccg gtggatttca tgtagaagga cgtcttgccc tggtggtggg cggtgaacat
     1381 gcggtcgtca aaaatgcggg tgagcatcat ggcgcgcagg ccgcgccgca atatgtccgg
     1441 ggctaggcgc gggtcccacg ggccgacagc ctgcccatcc ttggccagga cgcggatgag
     1501 gctgtagggc aggtcccgca tctccgcttc gggggtaagc cagtccgggc agcggagcgc
     1561 cccggcctcg gggaaagtga gatagctgaa gtccggcttc tcgcccgggc gcgcgtgcgg
     1621 gaccgggata tgcaggctaa gcggcggctg gttgcgcatg gcgggcctcg ctgctggacg
     1681 gattcctcgt gttttcagaa ccatagcgca ccaacccggc agcgcgaaat tgtattttgg
     1741 cggtgcagcc ctacggtttc tggcgggtgg tcacatggat ggcggcttgc caccgcggtt
     1801 actatgtgac ggcgcttacg gtccatgtcg ccgttttcac gattggcgcg gcttcaaggg
     1861 tggcgacaac ctggtcgagt tcattggctg cggcgctgga ggcgaccaat gttgcgccaa
     1921 gttccatcag atcttcgctc tcggtcagga cggcgacctc gcgtaccgga taatgcgcgg
     1981 cttccagcgc gtcgaacagc aggtcacgca cgtccggcac gttttccggc ctgcaggtgg
     2041 catggactgt atattgcgcc tcggttgtgg ccgcatccac cggccggcgg ttgatgtaat
     2101 tgaccagcgg acgcagcagc gtgttgccgg ccagcacgaa gaaggtgagg agcgccgcct
     2161 gcgccggata gccgcagcct gagaacgcgc ccaccgccgc cgagcaccat agcgtgctgg
     2221 ctgtgttgag cccgcggata ttggcgccat ccttgaggat gacgccggca ccgaggaagc
     2281 cgataccgga gacgatatag gcgacgatgc gagtcgcgcc ttccggccca gcgagctcaa
     2341 cgccgagatc ggcgaaggcc gcggcaccga gcgccaccag cacggtggtg cgcagcccgg
     2401 ccgaacgctg gcgccattgc cgctcggcac cgatgagcgt gccaagcagg aaagcggtga
     2461 ggaaagcaac aaagcttgcc ggcatatgcg ggaacatcgt tacgttcctc ttaatggttc
     2521 aggctgcggt agaagcccca tcccattacg gcgagcatca ccaggatgta gatgcgcagg
     2581 ccccagaata ccatctgctg ccaggggcgc agcaccacac ggccaatttc cattggcggt
     2641 gccagccagt tttcctcctg cgccagggcg gcgagggctt cttcactgtc tttgtcatag
     2701 tagctcatcg ctcacctcac agcgcgttgg ggaacacggt cacgagcccg tacaggccgt
     2761 tgcaaatgat cagcagcacc atcacgccga ttgagagcgc gttgcgcagc ggcgagttga
     2821 catgctcgcc gagcagttcg cggtcattga gcagcatcag cagaaacagc atggccgccg
     2881 gcatgaacac ggtggcgatg acctggacgg tgaggttgag gaaccccaca ggcacgttag
     2941 gcagcatcag cacggcagcg gcgatggctg tgccgagaat cgccggcgca tagaagggc
//
LOCUS       DASQCV010000090         4233 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1840511, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000090 DASQCV010000000
VERSION     DASQCV010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4233
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1840511"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..937)
                     /locus_tag="VEQ16_01340"
     CDS             complement(<1..937)
                     /locus_tag="VEQ16_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HYP62497.1"
                     /translation="MNESDIRAALAPFKVESRIDGVHVQEGLVQVSLLATREEASSLE
                     PLRRDMEAALRHVPGVKSATVVLTAHSKPAAPPPENLVPGVKKIIAVASGKGGVGKST
                     VAVNLAVALAQSGLKVGLLDADIYGPSVPRMLGASAQPVVQGGRILPLMAFGLKLMSI
                     GFLVPEEKALVWRGPMVMSAINQMLGQVEWGELDMLVVDMPPGTGDAQLTLAQKAKPH
                     GAVIVSTPQDISLLDARRGITMFNQVGVPVLGIVENMSFFCCPNCGHRSDIFGHGGAR
                     AEAERLGVPFLGEIPLQIAIRESGDVGMPITASAPQ"
     gene            997..2397
                     /locus_tag="VEQ16_01345"
     CDS             997..2397
                     /locus_tag="VEQ16_01345"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HYP62498.1"
                     /translation="MRYLSRLLAMFLLAAAGAAHAAELPPGMANLAAQVLPAVVSIAA
                     LAPAGNASNNDDNGGDDNGDNGGDNSALRTADNTAGDVVPPPKSIESLGSGFVFDPSG
                     YILTNNHVVDNANAVTVTFADGTVYNATIAGRDKDADLAVLKVQTDHPLAYVKFGDSG
                     KMRVGDWVLAIGNPFGLPGSSSAGIVSALHRQIGDTSFDDFIQTDAAINRGNSGGPLF
                     NMAGQVIGVNSAIEAPNGNSDGVGFAIPSAMAAPVAQALAHLGVMQRGWLGVATAELT
                     PQVQQAMSLPSTNGALVGNVAPDGPSDGVLKTGDVIVALDGVALANPRALLIRTAEIP
                     VGNSVVVRFYRDGGVGQANVTVSANPAPLDETIPQPAPPPPSPVVLSELGLGLAGKPA
                     PGGVAVISVKGPAAEAGIIAGDVIEQVNGQNVANAADLQALVKALGNMPPVFLISGDT
                     AAGTNPGPRWVAVPAG"
     gene            complement(2398..2679)
                     /locus_tag="VEQ16_01350"
     CDS             complement(2398..2679)
                     /locus_tag="VEQ16_01350"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HYP62499.1"
                     /translation="MAKLLDKDALAHLPKGWRLAEDEKSISQNFKFKNFSEAFAFMTR
                     VALLAETADHHPDWLNVYNRVEITLSTHDSGGLTMKDVALAEAITALNG"
     gene            2812..3633
                     /locus_tag="VEQ16_01355"
     CDS             2812..3633
                     /locus_tag="VEQ16_01355"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP62500.1"
                     /translation="MQLAGKTVFITGGGGGIGEGMALAFAEKGAKLVLADINLHEAEE
                     VAARLPAGTQAMVVALDVTSLESWEAARQQAEARFGAVDVLCNNAGISTGFRPLVEIS
                     PEEFARLMAINVTGVYNGVVSFAREMTARGAGHIVNTSSMNGLSPFGNFAAYSASKFA
                     VLGLSDSLRQELAPLGIGVSTLFPGLTRSRMAEGDLAKFGANDPARAAAIRANMMEPV
                     WLGRAVARAVEQNEAYIITHPEYKDAVAERFEAILAAFGEPAQPGYKTGATATKG"
     gene            complement(3640..>4233)
                     /locus_tag="VEQ16_01360"
     CDS             complement(3640..>4233)
                     /locus_tag="VEQ16_01360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012812654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HYP62501.1"
                     /translation="SQKLHELARHATVPVINGLTDLSHPCQIMADILTFEEHRGPVAG
                     QKIAWVGDGNNVAASFIEAAARFNFSLHLACPAGYWPRAEVLEWARAEKADVKVGIDP
                     EEAVANAACVVTDTWLSMSDSEDEAAAREAAFAPYQVTPALMALAAPQAIFQHCLPAH
                     RGEEVAAEVIDGPASVVFDEAENRLHAQKAILAWALG"
BASE COUNT          740 a         1329 c         1430 g          734 t
ORIGIN      
        1 cttgcggcgc ggaggccgta atcggcatgc ctacatcgcc gctctcgcgt atggcgatct
       61 gcagcggaat ctcgccgagg aacggcacgc cgagacgctc cgcctcggcc cgcgccccgc
      121 catggccgaa aatatccgag cgatggccgc aattggggca gcagaaaaag gacatgttct
      181 cgacaatgcc cagcacgggc acgccgacct ggttgaacat ggtgatgccc cgccgcgcgt
      241 cgagaagcga gatatcctgc ggggtggaga cgatgaccgc cccgtgcggt ttagctttct
      301 gcgccagcgt gagctgcgca tcgccggtgc cgggcggcat gtccaccacc agcatatcca
      361 gctcgcccca ttccacctgg ccgagcatct ggttgatggc gctcatcacc atcggcccgc
      421 gccagaccaa ggctttttcc tccggcacca ggaagcctat ggacatgagc ttcaacccga
      481 aggccatgag cggcaggatg cgcccgccct gcaccacggg ctgcgccgag gcgcccagca
      541 tgcgcggcac tgaggggccg tagatgtcag catccagcag cccaaccttg agcccgcttt
      601 gcgccagcgc cacggcgaga ttcaccgcca cggtggattt gccgacgcca cctttgcccg
      661 aggccacggc gatgatcttt ttcacccccg gcaccagatt ctcagggggc ggcgccgccg
      721 gcttggaatg ggcggtgagc accacggtcg cggatttcac ccccggcaca tggcgcagcg
      781 cggcttccat gtcccgccgc agaggctcca gcgatgaagc ctcctcgcgt gtggccagga
      841 gactgacctg gaccagcccc tcctgcacat gcacaccatc tatccggctt tccaccttga
      901 agggcgccag ggccgcgcga atatcagact cgttcatacc atttgacata gaccagcccc
      961 ttgcgaagat catccccgcg ccgcaaagtt ttgcctatgc gttacctgtc ccgcctgctc
     1021 gccatgttcc tcctcgccgc cgccggcgcc gcgcatgcgg cggaattacc gccgggcatg
     1081 gccaatctcg ccgcccaggt gctgcccgct gtggtgagca tcgccgccct ggcccctgcc
     1141 gggaatgcgt cgaataacga tgacaatggc ggcgatgata acggggacaa tggcggcgac
     1201 aattccgccc tgcgcaccgc cgataacacc gccggcgacg tggtgccacc gcccaaatcc
     1261 atcgaatcgc tcggctcagg cttcgtcttc gacccctcgg gctatatcct caccaacaac
     1321 catgtggtcg ataatgccaa tgcggtgacc gtcaccttcg cggacggcac ggtttataac
     1381 gccaccatcg ctgggcgcga caaggatgcc gacctcgccg tgctgaaggt gcagacagat
     1441 catcctctgg cctatgtgaa atttggcgat tccgggaaaa tgcgcgtggg ggactgggtg
     1501 ctggccattg gcaacccgtt cggccttccg ggcagctcct ctgccggcat tgtcagcgcg
     1561 ctgcatcggc agatcggcga tacctccttc gatgatttca tccagaccga cgccgccatc
     1621 aaccgtggca attccggcgg gccgctcttc aacatggcgg gccaggtgat cggggtgaat
     1681 tccgccatcg aggcgccgaa cggcaattcc gacggggtgg gcttcgccat cccctccgcc
     1741 atggcggcac ccgtggcgca ggcgctggcg catctgggcg tgatgcagcg cggctggctg
     1801 ggggtggcca cggccgagct gacgccgcag gtccagcaag ccatgagcct gcccagcacc
     1861 aatggcgcgc ttgtcggcaa tgtcgcgccg gatgggccga gcgacggggt gctcaagacg
     1921 ggcgatgtga tcgtggcgct ggacggggtg gcgctggcca atccgcgcgc tttgctcatc
     1981 cgcacggccg aaattcccgt ggggaacagt gtggtggtgc gcttctaccg cgatggcggt
     2041 gtcggccagg ccaatgtaac ggtcagcgcc aatccggcgc cgttggatga gaccattcct
     2101 cagcctgctc cgcccccgcc gtcgccggtg gtgttgagcg aactcgggct agggctggcg
     2161 ggcaagccgg cccctggcgg ggtcgcggtc atctcggtga aaggcccggc ggccgaggca
     2221 gggatcatcg ccggggatgt gatcgaacag gtgaacgggc agaacgtggc gaatgccgcc
     2281 gatctccagg cgctggtgaa ggcgctgggc aatatgccgc cggtcttcct catcagcggc
     2341 gatacggcgg ccggcacgaa tcccggcccg cgctgggtag cggtgcccgc cggctgatca
     2401 gccgttaagc gccgtgatag cctcggccag ggcgacgtcc ttcatcgtaa ggccgcctga
     2461 atcatgggtg gagagggtga tctccacccg gttatagacg tttaaccagt ccggatgatg
     2521 gtccgccgtt tccgcgagca gagcgacgcg ggtcatgaag gcgaaagctt ccgagaaatt
     2581 cttgaacttg aagttctggc tgatggattt ttcgtcctcc gccaggcgcc agcctttggg
     2641 caaatgggca agcgcgtcct tgtcgagcag tttggccatg ggagatcctc ctggccggaa
     2701 ggtgcggcgc aagggggcct attgcaaggg aggtcatagc aagggcgggt cttttcctgc
     2761 tgtggataat ttgcgacaat attgtcgcaa attataaccg aggagacagc aatgcagctg
     2821 gcaggcaaaa ccgtgttcat cactggcggc gggggtggaa ttggcgaggg gatggcgctg
     2881 gccttcgccg agaagggcgc gaagcttgtt ctggccgata tcaatctgca tgaggcagaa
     2941 gaagtggccg cgcgcctgcc tgccggcacg caggcgatgg tggtggcgct ggatgtaacc
     3001 tcgctggaaa gctgggaagc ggcgcggcag caggccgagg cgcgcttcgg cgcggtggat
     3061 gtgctgtgca acaatgccgg catctccacc gggttcaggc cgctggtcga gatttcaccg
     3121 gaggaatttg cccggctcat ggcgatcaat gtgaccgggg tttacaacgg cgtggtgagc
     3181 tttgcgcgcg agatgaccgc gcgcggggcc gggcatatcg tcaacacctc atcgatgaac
     3241 gggctcagcc cgttcggcaa tttcgccgcc tattcggcga gcaaattcgc cgtgctgggg
     3301 ctttcggatt cgctgcggca ggagctggcg ccgctgggga ttggggtgtc caccctgttt
     3361 cccggcctca cgcgcagccg catggccgag ggggatctgg cgaaatttgg ggcgaatgac
     3421 ccggcacgcg ccgctgccat tcgcgcgaac atgatggagc cagtgtggct cggccgcgcc
     3481 gtggcgcggg cggtggaaca gaacgaggcc tacatcatca cccacccgga atataaggac
     3541 gcggtggcgg agcgcttcga ggcgattctg gcggcgttcg gggagccggc gcagccggga
     3601 tacaagaccg gggcgacggc gacgaaggga taaaggttcc tatcccagcg cccaggccag
     3661 aatcgccttc tgcgcgtgca ggcggttctc ggcctcgtcg aacaccaccg aagccggacc
     3721 gtcgattact tcagcggcca cctcctcgcc gcgatgggcg gggaggcagt gctggaagat
     3781 cgcttgcggg gcggcgagcg ccatcagcgc cggggtgacc tggtaggggg cgaaggcagc
     3841 ttcgcgggcg gcggcttcat cctcggaatc ggacatggag agccaggtgt cggtgacgac
     3901 gcaggcggca ttggccacgg cttcctcagg gtcgatgccg accttcacat cggccttctc
     3961 ggcgcgggcc cattccaaca cttccgcgcg cggccagtag ccggccgggc aggcgagatg
     4021 gagcgagaaa ttgaagcggg cggcggcctc gatgaaagag gcggcgacat tgttgccatc
     4081 gccgacccag gcgattttct gtcccgcgac cggaccgcga tgttcctcga acgtcaggat
     4141 gtcggccatg atctggcagg ggtgggagag atcggtgagg ccgttgatga caggcacggt
     4201 ggcatggcgc gccagctcgt gcagtttctg cga
//
LOCUS       DASQCV010000091         5122 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_846310, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000091 DASQCV010000000
VERSION     DASQCV010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5122
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_846310"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..966)
                     /locus_tag="VEQ16_01365"
     CDS             complement(<1..966)
                     /locus_tag="VEQ16_01365"
                     /inference="COORDINATES: protein motif:HMM:NF017885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HYP62502.1"
                     /translation="MAVIEQINPRLLVWARETAGLTVDEAAEKLGLTSSSRSTSVEKL
                     AALETGERAPTAQQLLRAAATYRRPLVAFYLPEPPGRGERGEDFRVVQGTVSERENGI
                     LDALLRDLKARQQLLRGMLSDDEEARPLAFVGASRVGQGSFKIAAAIRVVLEVTEEEQ
                     RAAKGAAALFALLRTACEKAGIYVLLLGDVGSHHSDIGENVFRGIALADEIAPFIVIN
                     DNDTPAARSFTLIHELAHIWIGASGVSGPLQAMSANAIERFCNDVAGEFLLPSASLDR
                     PPQLDGEFESILRVADRVAENWNISPALVTYTFASKGWIEPDTASR"
     gene            complement(1131..1207)
                     /locus_tag="VEQ16_01370"
     tRNA            complement(1131..1207)
                     /locus_tag="VEQ16_01370"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1171..1173),aa:Arg,seq:acg)
     gene            complement(1262..2368)
                     /gene="leuB"
                     /locus_tag="VEQ16_01375"
     CDS             complement(1262..2368)
                     /gene="leuB"
                     /locus_tag="VEQ16_01375"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HYP62503.1"
                     /translation="MTANKTLLLLPGDGIGPEVMAQARRVLDWVQKSGRASFRIFEDH
                     VGGAAIDAYGVPVTDATVQKAKEVDAVLFGSVGGPKWDSVPFEIRPEAALLRLRSELG
                     VFANLRPAKVFDALVESSSLKAELVRGLDIMIVRECIGGIYFGEPRGIETLPDGTKRG
                     INTEVYTTAEIERVGRVAFDLARKRQGRVCSVEKANVMESGLLWRQVMTALQAAEYPD
                     VQLSHMYADNCAMQLAKNPKQFDVIVTGNLFGDILSDLAAMLTGSLGLLPSATLGAKD
                     ATGRRPGFYEPIHGSAPDIAGKGVANPMAQILSLALLLRYSFDMEEDAAAIEAAVERV
                     LAKAGRTPDIKVEGRPVISTSEMGDALLAELAAI"
     gene            complement(2372..2986)
                     /gene="leuD"
                     /locus_tag="VEQ16_01380"
     CDS             complement(2372..2986)
                     /gene="leuD"
                     /locus_tag="VEQ16_01380"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HYP62504.1"
                     /translation="MDKFSLLTATAAPLNVANVDTDMIIPARFLKTIKRTGLGVSLFA
                     NIRYNADGSEKPDFVLNQPKYRKAEILVAGDNFGCGSSREHAPWALLDFGIRCVIAPS
                     FADIFFNNCFKNGILPIALPEEIVAKLMEDAALGTNARLSIDLENQVVVRPNGEKIPF
                     EVDPFRKHCLLNGLDDIGLTLEHTAAISAYEAKIPAWQPKIHGA"
     gene            complement(2986..4389)
                     /gene="leuC"
                     /locus_tag="VEQ16_01385"
     CDS             complement(2986..4389)
                     /gene="leuC"
                     /locus_tag="VEQ16_01385"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HYP62505.1"
                     /translation="MPRTLFDKIWDAHVVDRMEDGTCVLYIDRHLVHEVTSPQAFEGL
                     RMAGRRVRRVDATIAVVDHNVPTDADRLKGINEPESKLQIETLEHNVAEFGVPYFPIS
                     DTRQGIVHVIGPEQGISLPGMTIVCGDSHTSTHGAMGALAFGIGTSEVEHVLATQTLL
                     QKPAKNMLVRVDGKLPAGCTGKDIVLAIIGKIGTAGGNGHVIEYAGEAIRALDMAGRL
                     TVCNMSIEAGARAGLIAPDETTFAYIKGRPYAPQGADFDKAVEYWKTLPSDEGAQYDK
                     VVVLDAAEIVPQVTWGTNPEAVIPVTGIVPNPADEADEVKRAQMERMLSYMALEPGQK
                     IAGTKVDVVFIGSCTNSRIEDLRAAAAVAKGRHVAEGVRVLVVPGSGLVKKQAEEEGV
                     AQIFIDAGFEWREAGCSMCLGMNPDKLTPGQRCASTSNRNFEGRQGPGGRTHLLSPAM
                     AAAAAVTGVITDVRELV"
     gene            complement(4632..5018)
                     /gene="rplS"
                     /locus_tag="VEQ16_01390"
     CDS             complement(4632..5018)
                     /gene="rplS"
                     /locus_tag="VEQ16_01390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010512891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HYP62506.1"
                     /translation="MNIIQTLEAEQIAKLTAAKNVPAFAPGDTLRVNVQVKEGERSRI
                     QAFEGLCIARSNRGINSSFTVRKISYGEGVERIFPLYAPTIADITVVRRGDVRRAKLY
                     YLRGRRGKSARIAEKAREVEAPAAAE"
BASE COUNT         1024 a         1709 c         1450 g          939 t
ORIGIN      
        1 gcgactcgcg gtgtcaggct cgatccaccc cttgctcgca aacgtatatg tcaccaaagc
       61 cgggctgatg ttccaattct ctgccacccg gtcagcgaca cgcaaaattg attcgaattc
      121 gccatccaac tggggcgggc gatccaggct ggcgctcggc aacaaaaatt caccggccac
      181 atcattgcaa aagcgctcga tagcgtttgc agacattgcc tgaagcggcc cacttacccc
      241 actggcaccg atccaaatat gggccaactc atggatcagc gtgaaggatc tcgccgccgg
      301 cgtatcatta tcattgatga cgataaaagg ggcaatttcg tcggcgaggg caataccgcg
      361 aaagacattt tctccgatat cagagtgatg ggacccaaca tcgccaagga gaaggacata
      421 tatgcccgct ttctcgcagg ccgttcgcag caacgcgaac aaagccgctg cccccttagc
      481 ggcccgttgt tcctcctcgg tcacctcaag cactacgcgg atcgcggctg cgatcttaaa
      541 tgagccctgc cccacacgag acgcaccaac aaaggccaga ggccgcgcct cctcatcgtc
      601 ggagagcatc ccgcgaagca attgttgacg agctttcagg tctcgtagca gcgcatcgag
      661 gatgccgttt tcacgctcgg atactgtacc ctgcacaacg cgaaaatcct cgccccgctc
      721 acctcggcca ggcggttcag ggagatagaa cgcgaccagc gggcgccgat atgtggcggc
      781 cgcgcgcaag agctgctgcg cagtaggcgc tcgctctccg gtctccaggg cagccagctt
      841 ctccacgctt gtgcttcgag aagaactcgt caagccgagt ttctccgcag cctcatcaac
      901 ggtgaggccg gcagtctcgc gtgcccaaac cagcaggcgc gggttgattt gttcgatcac
      961 agccacgaat cgatcctaat gaggttgtga ttccatggga atcctctgca acacgaccat
     1021 gcgaaaaaat gccgccatca gatgccttga cggttaccca tatcgacacc caaaacgcaa
     1081 aacgggccgc caaagagcga cccgcttgat gcctaagtct ttgaaaaata tggcgcgccc
     1141 gaagagattc gaactcctga ccctcagatt cgtagtctga tgctctatcc agctgagcta
     1201 cgggcgcgtg cggccggggt gtaactgaac cgtctccttc aggcaacccc ggcgtaaaaa
     1261 attaaatggc ggccagctct gcgagcagcg catcccccat ttcagaagtg gagatgaccg
     1321 gacggccttc caccttgatg tccggcgtgc gcccggcttt ggccagaacg cgctctacgg
     1381 cggcctcgat ggcggcggcg tcctcctcca tgtcgaagga atagcgcagc agcagcgcca
     1441 ggctcaggat ttgcgccatg gggttggcga cccccttgcc ggcaatgtcc ggggcagagc
     1501 catggatggg ctcgtagaag ccaggacggc ggcctgtagc atccttggcg ccgagcgtgg
     1561 cggaaggcag cagccccagc gagccggtga gcatggcggc gaggtcggag aggatgtcgc
     1621 caaacaaatt gccggtcaca atcacgtcga actgcttcgg attcttggcg agctgcatgg
     1681 cgcaattatc ggcatacatg tggctcagct gcacgtccgg atattcggcg gcctgcagcg
     1741 cggtcatcac ctggcgccag agcagcccgc tctccatcac attggccttc tccacgctgc
     1801 acacgcggcc ctggcgcttc cgcgcgaggt cgaacgccac acggcccacg cgctcaatct
     1861 cggcggtggt gtaaacctcg gtattgatgc cgcgcttggt gccatccggc agcgtctcaa
     1921 tcccgcgcgg ctcgccaaaa taaatcccgc caatgcattc gcgcacgatc atgatgtcca
     1981 gcccgcgcac cagctcggcc ttcagcgagg acgactccac cagcgcatcg aacactttcg
     2041 ccgggcgcag attggcgaac accccaagct ccgagcgcag ccgcagcaaa gccgcctcgg
     2101 gacggatttc aaacggcacg gaatcccatt tcggcccgcc gacggagccg aacagcaccg
     2161 cgtccacctc cttggccttc tgcaccgtcg catccgtcac cggcacgcca taagcgtcga
     2221 tggcggcgcc gccgacatgg tcctcaaaaa tccggaagct ggcgcggccg gatttctgca
     2281 cccagtccag cacgcggcgc gcttgggcca tcacttcggg cccaatcccg tcaccgggca
     2341 ggagcagaag agtcttattg gcggtcatta attatgctcc gtgaattttc ggctgccagg
     2401 cagggatttt cgcttcgtaa gcggaaatgg cggcggtgtg ctctagtgtc aggccgatat
     2461 catccagccc attgagcagg caatgtttgc ggaacggatc gacctcgaac gggattttct
     2521 ccccattcgg ccgcaccaca acttggttct ccagatcgat ggagagacgc gcattggtcc
     2581 ccagcgccgc atcctccatc agcttcgcca caatctcttc cggcaaagcg atcggcagaa
     2641 tgccgttctt gaagcaatta ttgaagaaga tatcggcaaa gctcggcgca atcacgcaac
     2701 ggatgccgaa atccagcagc gcccagggcg catgctcacg cgaggagccg caaccgaaat
     2761 tatcgccggc aacaagaatt tcggccttgc ggtatttcgg ctggttcagc acgaaatccg
     2821 gcttctcgct cccatccgca ttatagcgga tattggcaaa caggctgacg cccaagcccg
     2881 tgcgcttgat ggtcttcagg aaccgcgccg gaatgatcat gtccgtatcc acattcgcca
     2941 cattcagcgg cgcggcggtg gcggtgagga gagaaaactt atccattaca ccagctcccg
     3001 gacatcggta atcacgcccg tcacggcggc ggcggcggcc atagcggggg agagcagatg
     3061 cgtgcgcccg cccggcccct ggcggccctc gaaattacgg ttggaggtcg aagcacagcg
     3121 ctggcccggc gtcagcttgt ccgggttcat gcccaggcac atcgagcagc ccgcctcgcg
     3181 ccattcaaac ccggcatcga tgaatatctg cgcaacgccc tcttcctcgg cctgcttctt
     3241 caccaggccc gagcccggca ccaccagcac ccgcacgcct tccgccacat ggcggccctt
     3301 ggccacggca gcagcggcac gcaaatcctc gatgcgcgaa ttggtgcagg agccgatgaa
     3361 caccacatcc accttggtgc cagcaatctt ctggcccggc tccagcgcca tgtagctcag
     3421 catgcgctcc atctgcgcgc gcttcacctc atccgcctca tccgccgggt tgggcacaat
     3481 cccggtcacc ggaatcaccg cctcagggtt cgtcccccag gtcacctgcg gcacaatctc
     3541 ggccgcatcc agcaccacca ccttgtcgta ctgcgcgccc tcatcgctcg gcagcgtttt
     3601 ccaatattcc acggccttgt cgaaatccgc gccctgcggc gcataaggac ggcccttgat
     3661 atacgcaaaa gtcgtttcat ccggcgcaat cagcccggcg cgcgcacccg cttcgatgct
     3721 catattgcaa acggtcaaac gcccggccat gtccagcgcg cggatcgcct cgccggcata
     3781 ctcgatcaca tggccattgc cgcccgccgt gccgatcttg ccaatgatgg ccagcacaat
     3841 atccttgccc gtgcagccag ccggcagctt gccatccacc cgcaccagca tattcttcgc
     3901 cggcttctgc agcaaagtct gcgtcgccag cacatgctcc acttcggacg taccaatgcc
     3961 aaacgccagc gcgcccatcg ccccatgcgt ggaggtatgg ctgtcgccgc acacaatcgt
     4021 catgcccggc agggaaatcc cctgctccgg cccaatcacg tgcacaatgc cctggcgcgt
     4081 gtccgaaatc gggaaatacg gcaccccgaa ctcggccaca ttatgctcca gcgtctcaat
     4141 ctgcagcttg ctctcaggct cgttgatgcc cttcaaacgg tccgcatccg tcggcacatt
     4201 atggtccacc accgcaatcg tggcatccac acgccgcacc cggcgccccg ccatgcgaag
     4261 cccctcaaac gcctgcgggc tcgtcacctc atgcacaaga tgccggtcaa tatagagaac
     4321 gcacgtgccg tcctccatcc ggtccaccac atgcgcatcc catatcttgt cgaacaaagt
     4381 ccgcggcatc gaactcccgg ctcctctgag tagaaaggcc agggggctct gccccctgga
     4441 cccccgctgg gcctgaggcc cagaccccat tagtttaggt tctgggaggg aggggtaaat
     4501 cgcccccaag aacatagccg cattgccacc gccggcggcg gcgatttacc cctccctccc
     4561 agaacccaag tagtgggggt ctggggcctc aggccccagc ggggtccagg ggcggagccc
     4621 ctggcctttc tttactccgc agcagctgga gcttcgactt cgcgggcttt ctcggcgata
     4681 cgggcggact taccgcggcg gccgcgcagg tagtagagct tggcgcggcg cacgtcgcca
     4741 cggcgcacga cggtgatgtc ggcgatggtg ggggcgtaga gggggaagat acgctcgacg
     4801 ccttcgccgt aggagatttt ccgcacggtg aaggaggagt tgatgccgcg gttggagcgg
     4861 gcgatgcaga ggccctcgaa ggcctggata cgggagcgct cgccttcctt cacctgcacg
     4921 ttcacgcgca gcgtatcgcc gggcgcgaag gcggggacgt tcttggcggc ggtcagcttc
     4981 gcaatctgct cggcttccag ggtctggatg atgttcatgg gtctagtgtc ctttacgaaa
     5041 cgggctttta gggcgcagcg gccccggatg caatgtattg gttgtagagg tcgggtctgc
     5101 gggattgcgt aatctcgcgc gc
//
LOCUS       DASQCV010000092         3632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2173511, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000092 DASQCV010000000
VERSION     DASQCV010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3632
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2173511"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..741
                     /gene="purC"
                     /locus_tag="VEQ16_01395"
     CDS             <1..741
                     /gene="purC"
                     /locus_tag="VEQ16_01395"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012225610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HYP62507.1"
                     /translation="EGKAKILFEGPEPGTLVQYFKDDATAFNAQKKGVITGKGVLNNR
                     ISEFLMTKLQDINIPTHFIRRLNMREQLIKEVEIIPIEVVVRNIAAGSMSQRLGIPEG
                     TRLPRSIIEFYYKNDALNDPMVAEEHITAFGWATPHDMDDIVHLTLRINDFLSGLFLG
                     VGITLVDFKVEFGRLYENEDMRIVLADEISPDNCRLWDSKTNEKMDKDRFRRDLGKIE
                     EAYQEVARRLGILPEAGSRDLQGPETMQ"
     gene            738..980
                     /gene="purS"
                     /locus_tag="VEQ16_01400"
     CDS             738..980
                     /gene="purS"
                     /locus_tag="VEQ16_01400"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HYP62508.1"
                     /translation="MKAVVTVMLKHGVLDPQGKAIGQALNHLGFDQVGEVRAGKIIEL
                     ELTETDPAAAKVAAEDMARKLLANTVIESFKVEIAA"
     gene            1021..1683
                     /gene="purQ"
                     /locus_tag="VEQ16_01405"
     CDS             1021..1683
                     /gene="purQ"
                     /locus_tag="VEQ16_01405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HYP62509.1"
                     /translation="MKAAILLFPGINRERDMVLAVRQSFAQEPQIVWHKETELPAGID
                     LVILPGGFSFGDYLRCGAMAAHSPIMRAVKDHAARGGYVLGVCNGFQILTEAGILPGA
                     LLRNASLRFLSMDTVLSVERADTVFTNHWQKGATFRAPMAHGDGNYNADEETLNRLEG
                     ENLVAFRYADQNRNGAARDIAGIFSPNLRVLGLMPHPENLVDPLMGGIDGKPLFDALA
                     AA"
     gene            1680..>3632
                     /gene="purL"
                     /locus_tag="VEQ16_01410"
     CDS             1680..>3632
                     /gene="purL"
                     /locus_tag="VEQ16_01410"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HYP62510.1"
                     /translation="MTAINEALAKSFGLNAEEWRKVLEIMGRTPSLTELGIFSVMWSE
                     HCSYKSSRVWLKELPTKAPWVIHGPGENAGVIDIGDGLAAIFKMESHNHPSFIEPYQG
                     AATGVGGILRDVFTMGARPIANLNALRFGDPSLPVTKRIVDGVVRGIGGYGNCVGVPT
                     VGGEVNFHPAYNGNPLVNAMTVGIARKDKIFLSAAAGVGNPVVYVGSKTGRDGIHGAT
                     MASTEFDASSEEKRPTVQVGDPFTEKLLIEACLELMQTDAIVAIQDMGAAGLTSSSVE
                     MAGKGGVGIELELDNVPQRETGMSAYEMMLSESQERMLLILKPERTEMARGIIEKWDL
                     DYAIIGHITDTGHIVVKHKGVVEADIPLDPLAEAAPLYHRPTAPTPKPAPLGPVASNV
                     PLLEALAKLIGSPDLCSRRWIYDQYDSTVGGQTVKRPAQADAAIVRLEGSKRALAMTA
                     DCTPRYCVADPEAGGAQAVAETWRNITATGAKPLAITDNMNFGNPEKPEIMGQFASAI
                     KGMAAACNALDFPVVSGNVSLYNETEGRPILPTPAIGGVGVLEDAAQAVGYGLTPGLA
                     LVVIGETRGELGRSLYLREICGREEGPPPTMDLAAERRNGDFVRSQILSSKVAACHDV
                     ADGGLLVAVAEMALAGACGVELTVENG"
BASE COUNT          718 a         1156 c         1116 g          642 t
ORIGIN      
        1 gaagggaaag ccaaaatcct gttcgagggg cccgaacccg gtacgctcgt gcaatatttc
       61 aaagacgatg cgaccgcctt caatgcgcag aagaagggcg tgatcaccgg caagggcgtg
      121 ctgaacaacc gcatcagcga attcctgatg acgaagctgc aggacatcaa catccccacg
      181 cacttcatcc gccgtctcaa catgcgtgag caacttatta aagaggttga gatcatcccc
      241 atcgaggtgg tggtccgcaa catcgccgcc ggctccatgt cgcagcgcct cggcatccct
      301 gaaggcaccc gcctgccgcg ctcgatcatc gagttctatt ataagaacga cgcgctgaac
      361 gacccgatgg tggcggaaga gcatatcacc gccttcggct gggccacccc gcacgacatg
      421 gacgacatcg tccatctcac tttgcgcatc aatgatttcc tctccggcct gttccttggc
      481 gtcggcatca cgctggtcga tttcaaggtg gaattcggcc ggctgtacga gaatgaggat
      541 atgcgcatcg tgctggccga cgagattagc cccgataatt gccgcctgtg ggactccaag
      601 accaacgaga agatggataa ggaccgtttc cgccgcgacc tcggcaagat cgaggaagcc
      661 taccaggaag tggcgcgccg cctgggcatc ctgcccgagg ccggttcgcg cgatcttcaa
      721 ggcccggaga cgatgcaatg aaggcggttg tgacggtgat gctcaagcat ggcgtgctgg
      781 acccgcaggg caaggccatc ggccaggcgc tcaaccatct cggcttcgat caggtgggcg
      841 aggtgcgcgc cggcaagatc atcgagctgg aactaaccga aacagacccc gccgccgcca
      901 aggtggccgc cgaggacatg gcacgtaagc tgctcgccaa taccgtgatc gaaagcttca
      961 aggtcgaaat cgcggcgtga ttcgccggca ccacgtcatc cgcctgcgca ggagacaagt
     1021 ttgaaagccg ccattctcct ctttcccggc atcaatcgcg aacgcgacat ggtgctggcg
     1081 gtccgtcaga gttttgcgca ggagccgcag atcgtctggc ataaggaaac cgagctgccg
     1141 gcagggattg acctggtcat cctgcccggc ggtttctctt tcggcgatta cttacgctgc
     1201 ggcgcaatgg cggcgcacag ccccatcatg cgggcagtga aggaccatgc ggcgcgcggc
     1261 ggctatgtgc tgggcgtgtg caacggtttc cagatcctca ccgaggccgg catcctgccc
     1321 ggcgccttgc tgcgcaacgc ctcgctccgc ttcctttcca tggacaccgt tctctccgtg
     1381 gaacgcgccg acaccgtctt caccaaccat tggcaaaaag gcgccacctt ccgcgcgccg
     1441 atggcgcatg gcgatggcaa ctacaatgcc gacgaagaga cgctaaaccg gctggagggg
     1501 gaaaacctcg tcgccttccg ctatgcggac cagaatcgca acggcgccgc ccgcgacatt
     1561 gccgggattt tctcgcccaa tctgcgtgtg ctcgggctga tgccgcaccc tgaaaacctc
     1621 gtcgacccgc tgatgggcgg gatcgacggc aaaccgcttt tcgacgcact ggccgccgca
     1681 tgaccgcaat caacgaagcc ctcgccaaat ccttcggcct caatgcggag gaatggcgga
     1741 aagtcctgga gatcatgggc cgcacgccaa gcctcaccga actcggcatt ttctcggtca
     1801 tgtggtcgga gcattgctcc tacaaatcga gccgcgtctg gctgaaggaa ctccccacga
     1861 aagcaccctg ggtcatccat gggccgggcg agaatgccgg tgtcatcgat atcggcgacg
     1921 ggctggcggc catcttcaag atggagtcgc acaaccatcc cagcttcatc gagccctatc
     1981 agggcgcggc caccggcgtg ggcggcattt tgcgcgatgt ttttacaatg ggcgcgcgtc
     2041 ccatcgccaa cctcaacgct ttgcgcttcg gggacccttc cctgcccgtg accaagcgca
     2101 tcgtcgatgg cgtggtgcgc ggcattggcg gctatgggaa ttgcgttggc gtgcccaccg
     2161 tgggcggcga ggtgaatttt catccggcct ataacggcaa cccgctggtt aacgccatga
     2221 cggtcggcat cgccaggaag gataagattt ttctctcggc cgccgccggt gtcggcaatc
     2281 ccgtggtgta tgtggggagc aagaccgggc gcgacggcat ccacggcgcc acgatggcca
     2341 gcacggaatt tgacgcctcc tccgaggaga agcgcccgac cgtgcaggtg ggcgacccgt
     2401 tcacggaaaa actcctcatc gaagcctgcc tggaactgat gcagaccgac gccatcgtcg
     2461 ccattcagga tatgggcgcg gccggcctta cctcctcctc ggtggagatg gcgggcaaag
     2521 gcggggtcgg catcgagttg gagctggata atgtgccgca gcgcgaaacc ggcatgtcgg
     2581 cttatgagat gatgctctcc gagagccagg agcgcatgct gctcatcctc aagcccgagc
     2641 gcaccgaaat ggcccgcggc attatcgaga aatgggacct ggactacgcc atcatcggcc
     2701 atatcaccga taccggccat attgtggtca agcataaggg cgtggtcgaa gccgacatcc
     2761 cgctagaccc gctggccgag gcagcccccc tctatcaccg ccccaccgcg ccgacaccca
     2821 agccggcacc gctcggcccc gtggccagca atgttccgct tctggaagct ctcgcaaaat
     2881 tgattggttc accggacctc tgttcacggc gctggatcta cgaccagtat gattccaccg
     2941 tgggcggcca gacggtgaag cgcccggccc aggccgatgc cgccatcgtg cggctggaag
     3001 gcagcaagcg ggctttggcc atgacggcag actgcacccc gcgctattgc gtggccgacc
     3061 ccgaagccgg cggcgcccag gcggtggcgg aaacctggcg gaacatcaca gctactggcg
     3121 ccaagccctt ggcgattacg gataatatga atttcggtaa tcccgagaag ccggagatca
     3181 tgggccagtt cgccagcgcc atcaaaggca tggccgccgc ctgcaacgcg ctggatttcc
     3241 cggtcgtgtc gggcaatgtg tccctctata acgagactga gggccgcccc atcctcccca
     3301 cccccgcgat tggcggcgtc ggcgtgctgg aggatgcggc ccaggctgta ggctacgggc
     3361 tgacgccggg ccttgcgctg gtggttatcg gcgagactcg aggagaactc ggcagatcat
     3421 tgtatttgcg ggaaatctgc ggccgcgagg aaggcccgcc acccaccatg gacctcgccg
     3481 ccgagcgccg caacggcgat ttcgtgcgga gccaaattct ctccagcaag gttgccgctt
     3541 gtcatgacgt ggcagatggc ggcctgctcg tggccgtggc cgagatggcc ctggccggcg
     3601 cgtgcggcgt ggaactgacc gtggaaaatg gc
//
LOCUS       DASQCV010000093         4279 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_18244, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000093 DASQCV010000000
VERSION     DASQCV010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4279
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18244"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1605
                     /locus_tag="VEQ16_01415"
     CDS             <1..1605
                     /locus_tag="VEQ16_01415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HYP62511.1"
                     /translation="TAVSELGVTMLLFLIGLELRPHRLWILRKAVFGMGLGQMVPTAL
                     VIFGLAHLAGVPMAGAVVLGIGLALSSTAIVLPMLSERSLLPSISGRDAFAVLLFQDM
                     AAIPVLALLPLLAGGDVAGQISWLAILRGAAVVACILVGGILLVQPLFRMVGYAKSPE
                     LFTATALLLVVGTAALADWAGLSASLGAFMAGVMVSDSEYRHELQADIEPFEGLLLGF
                     FFMSVGMSADLHLVESHPVEILVLVLALLAVKSVIAFGVSYTRRRLAGAALRFALALP
                     EGSEFSFVLFGAAVAAGALSRNVAAEAIVVVALSMMAAPVLFAAAERFVMPRLEARKP
                     PVFDKIETSPAPVIICGFGRVGQIVGRILTMQRIRFVALDKSQEQVDVVRRFGVKVFF
                     GDPTREEVMRAAGAESAEVLVIALDDMAATLAVATMVRRKFPNLRVVARARNRRHVHL
                     LMGAGVETIVRETFYSSLRMTELLMEKLDVAEAQAKRAIDLFRDHDEQMLTETYAIAD
                     DESKLLQTTQDANKELRDLFEADQSD"
     gene            complement(1723..2619)
                     /locus_tag="VEQ16_01420"
     CDS             complement(1723..2619)
                     /locus_tag="VEQ16_01420"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYP62512.1"
                     /translation="MTDSCSYLDQSDAVKERLDRMKARDVILRVDQLSKTFPAGKSEV
                     TALDKISFQTHRREFLCIIGPSGCGKSTLIRILAGLETGSSGRVLLDGHPVAGPGRER
                     GMVFQGYTLFPWLTVRKNVMFGLRMNNVSRAEAGKQADEWLNLIGLEKFADYYPHQLS
                     GGMKQRVAIIRALVNHPRILLMDEPFSALDAQTRARMQSYLLEIWKKVDITIIFITHD
                     LDEAIFLADRILVLSAHPGRVQELIEVPLERPRRPEHFTAEEFAATKARLEALIHPPR
                     EEVEEESYPAVPLLTDVRDSVE"
     gene            complement(2616..3638)
                     /locus_tag="VEQ16_01425"
     CDS             complement(2616..3638)
                     /locus_tag="VEQ16_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP62513.1"
                     /translation="MMLNVSDAAIAPMGAAETSQAVSGQWFRVREKLSRRARILFALA
                     SVLLPLSIWSAVSYVPFIWHPDVLISDPGDVDYFMPGMRVDKAMFATEIANAKTNGTT
                     PPVGTPCNPVYLPAPGDVLMAFYISFTTPPQDQNGLWLHQSLCQSIQTIFWGFIISSI
                     IGVPLGILCGAHSGMSRLVEPFVEFFRYLPAPAFSTLCVAVLGIYAGPKIAIIVIGTL
                     FQQILIIANTTRKADFSLVEAALTLGTKNLRLLTKVVIPSVLPDLYRDQRVLLGWAWT
                     YLIVAELVGATSGISLFITQQSRYQHFANVYAAIAMIGILGLGTDLILAALGRKLFPW
                     DRAAAE"
     gene            complement(3635..>4279)
                     /locus_tag="VEQ16_01430"
     CDS             complement(3635..>4279)
                     /locus_tag="VEQ16_01430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP62514.1"
                     /translation="AKPGITSIKDLAGQKVGIEVGLVEHLLLEHALQANGMKLSSVTL
                     VNTVTNNTPQVLASGSVAAIGAWQPISGQAMMQLPGARPIYTSALAPGLIFDGLAVSP
                     ESLKERPQDWAKVIKVWYRVLAYVNDPKTHADALAIMAARDGVSPALYVHYVKGTHIL
                     SRAEATKAFEKSAEISSLYGSDANADAFNVRNGVYKAPQTLSDYIDPSLFLADK"
BASE COUNT          718 a         1217 c         1496 g          848 t
ORIGIN      
        1 accgccgtgt cggagctcgg cgtgactatg ctgcttttcc tcatcgggct ggagctgcga
       61 ccgcatcgtt tatggatttt gaggaaggcc gtgttcggca tggggctggg gcagatggtg
      121 ccgacggctt tggtgatttt cgggctcgcg catctggccg gcgtgcccat ggcgggggcg
      181 gtggtgctcg gcatcgggct tgcgctgtcc tccaccgcga tcgtgctgcc catgctgagc
      241 gagcgcagcc tgcttccctc gatttccggg cgcgatgctt tcgcggtgct gttgttccag
      301 gacatggcgg ccattccggt gctggcgctg ctgccgctgc tggcgggggg cgatgtggcg
      361 gggcagattt cttggctcgc cattctgcgt ggcgcggcgg tggtggcttg catattggtg
      421 ggcgggattt tgctggtgca gccgctcttc cgcatggtgg gctatgccaa atcgccggaa
      481 ttattcaccg ccaccgcctt gctgctggtg gtgggcacgg cggccctggc ggactgggcc
      541 ggactctccg cctcgctcgg cgccttcatg gccggtgtga tggtttcgga ttcggaatat
      601 agacatgagc tgcaggccga tatcgagccc ttcgaggggc tgctgctcgg cttctttttc
      661 atgtcggtcg gcatgtcggc cgatctgcat ctggttgaaa gccatccggt ggaaatcctg
      721 gtcctggtgc tggctttgct cgctgtgaaa tccgtcattg cctttggtgt gagctacacg
      781 cgccgccgcc tggcgggagc ggcgctgcgt ttcgccttgg ccctgccgga gggcagcgaa
      841 ttcagcttcg tgctgtttgg cgcggcggtt gcggcggggg cactctcgcg caacgtcgcc
      901 gcggaagcca ttgtggtggt ggcgctctcc atgatggccg cgcccgtcct ctttgccgcc
      961 gctgagcgct tcgtgatgcc gcgcctggag gcgcgcaagc cgccagtgtt cgacaagatc
     1021 gagaccagcc cggcgcccgt catcatttgt ggcttcggac gtgtcgggca gattgtcggg
     1081 cgcatcctca ccatgcagcg gatccggttc gtggcgctgg ataagagcca ggagcaggtg
     1141 gatgtggtgc gccggttcgg ggtaaaagtg tttttcggtg acccgacacg cgaggaggtg
     1201 atgcgcgccg cgggggcgga gtccgccgag gtgctggtga ttgcgctgga cgatatggcg
     1261 gcaaccctgg cggtggcgac gatggtgcgg cgcaaattcc cgaatttgag ggttgtcgcg
     1321 cgggcgcgca accgccgcca tgtgcatctg ttgatggggg ccggagtgga aacgatcgtg
     1381 cgcgagactt tttactcctc attgcgtatg acggaactgc tgatggagaa gctcgacgtg
     1441 gcggaagcgc aggcgaagcg ggcgattgat ctattccgag accatgacga acaaatgctc
     1501 accgagactt acgccatcgc cgatgatgag agcaaattgc tgcagaccac gcaggacgcc
     1561 aacaaagagc tgcgcgatct gttcgaggcc gatcagagcg actgagaaat cgtttcagac
     1621 ctctactctg gcggccgcct ggcggcgatt tcctgcgcgc cggtgctcga aaatcaccgc
     1681 catgcgactc accagagcga gttctgaagc gatttctaac gcctactcca cgctgtcgcg
     1741 tacatctgtg agcaggggca cggcggggta gctttcttcc tccacctcct cgcgcggcgg
     1801 gtggatgagc gcctccagcc gcgccttggt ggcggcgaat tcttccgccg taaaatgctc
     1861 ggggcggcgc gggcgctcca gcggcacttc gatgagctcc tgcacgcggc cggggtgggc
     1921 ggagagcacg aggatgcggt cggcgaggaa gatcgcctcg tcgagatcgt gcgtgatgaa
     1981 gatgatggtg atgtccacct tcttccagat ttccagcagg taggattgca tgcgcgcgcg
     2041 ggtctgcgcg tcgagcgcgg agaagggctc gtccatgagc aatatgcgcg gatgattgac
     2101 gagggcgcgg atgatggcga cgcgctgctt catgccgccg gagagctggt gcgggtagta
     2161 atcggcgaat ttctcgagcc cgatgaggtt gagccattca tccgcctgct tgcctgcctc
     2221 ggcgcggctg acattgttca tgcgcagccc gaacatcaca ttcttgcgca cggtcagcca
     2281 gggaaagagg gtgtagccct ggaacaccat gccgcgctcg cgccccgggc cggcgacggg
     2341 gtgcccgtcc agcagcacgc ggccggagct gcctgtttcc agcccagcaa gaatgcggat
     2401 gagggtggat ttgccgcagc ccgaggggcc gatgatgcag agaaattcgc ggcggtgcgt
     2461 ctggaaggag attttgtcca gcgccgtcac ttcgcttttg ccggcgggga aagttttgct
     2521 cagctggtcc acgcgcagaa tcacgtcgcg cgccttcatc cggtccagcc gctctttcac
     2581 ggcgtccgat tggtcgagat aggagcaaga atcagtcatt cggcggcagc gcggtcccag
     2641 ggaaagagtt tgcggcccaa agcggccagg atgaggtcgg tgccgaggcc gagaatgccg
     2701 atcatggcga tggcggcata gacattggca aaatgctggt agcgcgattg ctgggtgatg
     2761 aagagcgaga tgcccgaggt ggcgccgacc agctcggcga cgatgagata ggtccaggcc
     2821 cagcccagca gcacgcgctg gtcgcgatag aggtccggca gcacgctggg gatgaccact
     2881 ttcgtcagca ggcggaggtt tttagtccct agcgtgagtg ctgcttccac cagcgagaaa
     2941 tccgccttgc gcgtggtgtt ggcgatgatg aggatttgct ggaacaaggt gccgataacg
     3001 atgatggcga ttttcggccc ggcatagatg ccgagcacgg cgacgcagag cgtgctgaag
     3061 gcgggtgctg gcagatagcg gaagaattcc acgaagggct ctaccagccg cgacatgccg
     3121 ctatgcgccc cgcataggat tccgagcggc acgccgatga tggaggagat gatgaacccc
     3181 cagaagatgg tctggatgct ctggcacagg ctttgatgca gccatagccc gttttggtcc
     3241 tgcggcgggg tggtgaagga gatgtagaag gccatcagca catcgccggg ggcgggtagg
     3301 tagaccgggt tgcacggcgt gcccaccggc ggcgtggtgc cgttggtttt ggcattggcg
     3361 atttcggtgg cgaacatcgc cttgtccacg cgcatgcccg gcatgaagta gtcgacatcg
     3421 ccgggatcgc tgatgagtac gtccgggtgc cagatgaagg gcacgtagga caccgccgac
     3481 cagatggaga gcggcagcag gacggaagcg agggcgaaca ggatgcgtgc gcgccggctg
     3541 agcttttcgc gcacgcggaa ccattggccg gacacggcct ggctcgtctc agccgccccc
     3601 attggggcta tggcggcgtc cgagacgttc agcatcattt atcagccagg aacagcgagg
     3661 ggtcgatata gtcggagagg gtctgcggcg ccttgtacac gccattgcgc acattgaagg
     3721 cgtcagcatt cgcgtccgag ccatagagcg aggaaatctc cgcgctcttc tcgaacgcct
     3781 tggttgcctc ggcacggctc aggatatgcg tgcccttgac gtaatgcacg taaagcgcgg
     3841 gcgatacgcc atcacgtgcg gccatgatgg cgagggcgtc ggcatgcgtc ttcggatcat
     3901 tcacataggc cagcacgcgg taccacacct tgatcacctt cgcccaatcc tgcggccgct
     3961 ccttgaggct ttctggcgag actgcgagcc cgtcgaaaat gaggcctggc gccagcgcgg
     4021 aggtgtagat ggggcgcgcg ccgggcaact gcatcatggc ctggccggaa atgggctgcc
     4081 aggcgccgat ggcggcgacg gagccggagg ccagcacctg cggtgtgttg ttggtcaccg
     4141 tgttcaccag cgtcacggaa ctcagcttca tgccattggc ctgcagcgca tgctcgagca
     4201 gcagatgctc gaccagcccc acctcgatgc ccactttctg cccggccagg tccttgatgc
     4261 tggtgatgcc gggcttggc
//
LOCUS       DASQCV010000094         2370 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_680995, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000094 DASQCV010000000
VERSION     DASQCV010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_680995"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..672
                     /locus_tag="VEQ16_01435"
     CDS             <1..672
                     /locus_tag="VEQ16_01435"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYP62515.1"
                     /translation="WTSYAGLATHCFLLARTASAGKGAIVILLVDMSSPGVQVKQIPA
                     LIGEGDIHEVFFTDVFVPAENLLGEEGQAWEIITFALQNERIGIPRYAFSRRMLDRAA
                     AKLQAEGRFGDPIVRDRAGRALAMCEAARLMVYRVVHQRATQAPQDAYGNLARWAIVQ
                     ADHAVNDFMTEFMPEGLLGADQMQIAHHQRAIAAGIASGAAEIQLNLAARRYLDLPGE
                     PRRAV"
     gene            638..1588
                     /locus_tag="VEQ16_01440"
     CDS             638..1588
                     /locus_tag="VEQ16_01440"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYP62516.1"
                     /translation="MTYQVSPAVQFDLSEDQSAILSGLEQLIGSLNIEAPKDPVVSAY
                     SQPLDDELTAGGFFEITQQEGFGLLDGALIVEALAKLPVSVEAAATILVAPAFLEDAG
                     RRPVALVSGSAAVPARFLPMAKTLLVDKGDDVLRIDIPEGAVEEVETLFAYPYGRLKN
                     PEALPAVSLGASRVAELRRRWRVAIAVEAAGLMQSALDTVLEHVKTRQQFGRPIGSFQ
                     AIQHRLVMAAEQGQATRWLALRAAWSDSDADAAIAATYAQDATPKFANDLHQFCGAMG
                     LTLEFPLHHWTYRLRALLGELGGSSGSALAAADAVWVKAS"
     gene            1585..>2370
                     /locus_tag="VEQ16_01445"
     CDS             1585..>2370
                     /locus_tag="VEQ16_01445"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYP62517.1"
                     /translation="MSEALDDFRARARAWLTANVPDHASPMEGKESRDYALAWQKRQF
                     EGGWAGLTWPQAYGGRELPVLQQIVWFEEYARAAAPSTHNACFVGANHAGPTLIACGT
                     DEQKAFHLPKIMKGEVIWCQGFSEPNTGSDLASLRTKGTVEGDELVVNGQKIWSSYAD
                     IADYQELLLRTDPNSSRHHGLSWVICKMDTPGITVRPIKTMAGPAKFAEVFYDNVRIP
                     LSNVVGGLNNGWKTAMATLSFERGTASLALQISLGRRVEELIAA"
BASE COUNT          383 a          673 c          851 g          463 t
ORIGIN      
        1 tggacctcct atgccgggct cgccacccat tgcttcctgc tggcgcgtac tgcgtccgcc
       61 ggcaagggcg cgattgtgat tctgctcgtc gatatgtcga gccccggcgt gcaggtgaag
      121 cagatcccgg cgctgatcgg cgaaggcgat attcacgagg tatttttcac cgatgtgttc
      181 gtgccggccg agaatctgct tggcgaggaa gggcaggcgt gggagatcat tacgtttgcg
      241 ctgcagaatg agcgcatcgg cattccccgc tacgccttct cgcgccgtat gctggaccgc
      301 gcggcggcga agctgcaggc ggaggggcgg ttcggtgacc ccatcgtgcg cgaccgcgcc
      361 ggacgggcgc tcgccatgtg cgaggcggcg cggctgatgg tgtatcgcgt ggtgcatcag
      421 cgcgcgacgc aggcgccgca ggatgcctat ggcaatctcg cgcgctgggc catcgtccag
      481 gccgaccatg cggtgaatga tttcatgacc gaattcatgc cggaagggct gctgggcgcg
      541 gaccagatgc agattgcgca tcaccagcgc gccatcgccg ccggcattgc ctcgggtgcc
      601 gcggagattc agctgaatct cgccgcccgc cgttatcttg acctaccagg tgagccccgc
      661 cgtgcagttt gatttatccg aagaccagag cgcgatctta agcggcctgg aacaattgat
      721 cgggtcgctg aatattgagg cgcccaagga ccctgtcgtg tcggcctatt cgcagccgct
      781 cgatgatgag ctgacggcgg gcgggttttt tgagatcacg cagcaagagg gattcggcct
      841 gctcgatggc gcgttgatcg tcgaggcgct ggcgaaattg ccggtgtccg tcgaggcggc
      901 ggcgacgatt ttggtggcgc ctgcgttttt ggaagatgcc gggcggcgtc cggtggctct
      961 ggtgtccggc tcggctgcgg tgccggcgcg gtttctgccg atggcgaaga cgctgctggt
     1021 ggataagggc gacgatgtgc tgcgcatcga tattcccgag ggcgcggtgg aagaggtgga
     1081 gacgctcttc gcctatcctt acggccggtt gaagaatcct gaggcgctgc ctgcggtgtc
     1141 tctcggcgcg tcgcgcgtgg cggaattgcg ccggcgctgg cgcgttgcca ttgccgtgga
     1201 ggcggcgggg ctgatgcagt ccgcgcttga tacggttctg gaacatgtga agacgcgcca
     1261 gcaatttggc cggcccatcg gctccttcca ggccatccag cacaggctgg tgatggcggc
     1321 ggagcagggc caggcgacgc gttggctggc tttgcgcgcg gcatggtccg acagtgatgc
     1381 cgatgcggcg attgcggcga cctatgcgca ggatgcgacg ccgaaatttg ccaatgatct
     1441 gcatcagttc tgcggcgcca tggggctgac gctggaattc ccgctgcatc attggaccta
     1501 tcgcctgcgc gcgctgttgg gcgagcttgg cggaagcagc ggctcggcct tggcggcggc
     1561 ggatgcggtg tgggtgaagg cgtcatgagc gaggcgctgg atgatttccg cgcccgcgcg
     1621 cgcgcctggc tgacggcgaa tgtgccggac catgcctcgc cgatggaagg gaaggaatcg
     1681 cgcgactatg cgctggcctg gcagaagcgg caatttgagg gcggctgggc cgggctgacc
     1741 tggccgcaag cctatggcgg gcgcgagttg ccggtactgc agcagatcgt ctggttcgag
     1801 gaatatgccc gcgccgccgc gccgagcacg cataatgcgt gtttcgtcgg cgccaaccat
     1861 gccggcccga cgctgattgc ctgcggcacg gatgagcaga aggcgtttca tctgccgaag
     1921 atcatgaaag gggaggtgat ctggtgtcag ggtttttcgg aacccaatac cgggtccgac
     1981 ctcgcctcgc tgcgtaccaa gggcacggtg gaaggcgatg agttggtggt gaatggccag
     2041 aaaatctggt cgagctatgc ggacattgcc gattaccagg aattgctgct gcgcacggac
     2101 ccgaattcct cgcgccatca tgggttgagc tgggtcatct gcaagatgga cacgccgggc
     2161 atcaccgtgc ggccgattaa gaccatggcc gggccggcga aattcgccga agtgttttac
     2221 gataacgtgc gtattccgct ctcgaacgtt gttggcgggc tcaataacgg ctggaagacg
     2281 gcgatggcga cgctcagctt cgagcgcggc acggcctcgc tcgcgctgca gatttcgctg
     2341 gggcggcgcg tggaagagct gattgccgcg
//
LOCUS       DASQCV010000095         1909 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2008100, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000095 DASQCV010000000
VERSION     DASQCV010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2008100"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..924)
                     /locus_tag="VEQ16_01450"
     CDS             complement(103..924)
                     /locus_tag="VEQ16_01450"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYP62518.1"
                     /translation="MRRVRRLVWRLLLLAGLGYAGICALLLIEQNRLLYIGTVLPPHD
                     DPLPYASFNGADGAQLGWMQAPAGPARGTVVYFHGNDEEAWQAARAYAPYFTARGWRV
                     IFPEYPGFDFRTGLTPTHDSVIAEAVAAMKLAGQRYPGPVWVAGNSLGAGIAAQAAKP
                     GGAQRVLLFVPWDSMGAVAQERYFFVPTSLLLALDGTDYDSCAALAGMGAKVFITYAG
                     RDDIIPPHHAQHLASCLGVPDGQIFSLPAATHIYWYKYLAPLQWDRMLTLPPGQD"
     gene            complement(921..1559)
                     /gene="hisH"
                     /locus_tag="VEQ16_01455"
     CDS             complement(921..1559)
                     /gene="hisH"
                     /locus_tag="VEQ16_01455"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HYP62519.1"
                     /translation="MLVAVIDYQSGNLASAARGLVLAAEQRGIKANVRITADPFAVAK
                     ADRIVLPGQGAFADCAAGLKSVEGLEEAMLNRVAEGVPFLGICVGMQLMAERGLEHGV
                     TQGFGWVEGEIARMEVGDARLPHMGWNELRFEPGAHPLLDGLRPGDHAYFVHSYALRG
                     GDGEEIIATTDYADQKIVAMVARGNKAGTQFHAEKSQQVGITILGNFLSWEP"
     gene            complement(1564..>1909)
                     /locus_tag="VEQ16_01460"
     CDS             complement(1564..>1909)
                     /locus_tag="VEQ16_01460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase"
                     /protein_id="HYP62520.1"
                     /translation="VGDKRGIQRFGHALVPMDETLVEAAIDLSGRPFVVWNVNFERPM
                     LGQMDTQLIEEFFRALAGNGLFNLHVNQRAGHNAHHVAEACFKSVARALRAAVAFEPR
                     IAGEIPSTKGAL"
BASE COUNT          339 a          608 c          660 g          302 t
ORIGIN      
        1 cgtccgtgaa gctctcgacg cattcggcgg acatggtcag gggcgggggc agggcgctgg
       61 tcacggctgc gtcttggcgc caaagcgcta ggtaatcaag cgctaatctt gtccgggcgg
      121 gagggtgagc atccgatccc attgcaaggg ggcgagatat ttataccagt agatatgcgt
      181 ggcggcggga agggaaaaaa tctggccgtc cggcacgccg aggcagcttg ccagatgctg
      241 cgcatgatgc ggggggatga tgtcgtcccg cccggcatag gtgatgaaga cttttgcgcc
      301 catccctgcc agggcggcgc aggaatcata gtcggtgccg tccaaagcca gcaggaggct
      361 ggtggggaca aagaaatagc gctcctgggc caccgcgccc atgctatccc agggcacgaa
      421 gagcagcacg cgctgcgccc cgcccggttt cgccgcctgg gcggcgatgc cggcgccgag
      481 cgaattgccg gcgacccaga ccgggccggg gtagcgttgc ccggccagtt tcatggccgc
      541 cacggcctcg gcgatgacgc tgtcatgggt cggggtgagg ccggtgcgga aatcaaagcc
      601 gggatattcg gggaagatca cgcgccagcc gcgcgcggtg aaataggggg cgtaagcccg
      661 tgccgcctgc caggcctctt cgtcattgcc gtggaaatag acgacggtgc cgcgcgccgg
      721 tccggcgggg gcctgcatcc agcctagctg cgcgccatcc gctccgttga agctggcata
      781 gggcaggggg tcatcatgcg gcggcaagac ggtgccgata taaagcagcc gattctgctc
      841 gatgagcagc agcgcgcaaa ttccggcata accgagcccg gcgagcagga gcagccgcca
      901 gacgaggcgc cggacccgcc tcacggttcc caggagagaa aattgccgag gatggtgatg
      961 ccgacctgct ggctcttctc ggcatggaat tgcgtgccgg ccttgttgcc gcgtgccacc
     1021 atggcgacga ttttctggtc cgcataatcg gtggtggcga tgatctcttc tccatcgccg
     1081 cctcgcaaag cgtaggaatg gacgaaataa gcgtggtcgc cggggcgcaa gccgtccagc
     1141 agcgggtggg caccgggctc gaagcgcaat tcgttccagc ccatgtgcgg caggcgcgca
     1201 tcgcccacct ccatgcgggc gatttcacct tccacccagc cgaagccttg cgtaacgcca
     1261 tgctccagcc cgcgctcggc catcagctgc atgccgacgc agatgccgag gaacggcacg
     1321 ccttccgcca cgcggttcag cattgcctcc tccagccctt ccacgctttt gagcccggcg
     1381 gcgcaatcgg cgaaggcgcc ctggcccggc agcacgatgc ggtcggcctt ggccacggcg
     1441 aaggggtcgg cggtgatgcg cacattcgcc ttgatgccgc gctgctccgc cgccagcacg
     1501 aggccgcgcg cggcggaagc gaggttgccg ctctggtaat cgatgacggc gaccagcatg
     1561 gggctacagc gcgcccttgg tggaggggat ctcgccggcg atgcgcggct cgaacgccac
     1621 ggcggcccgc aaggcgcgcg cgaccgactt gaagcaggcc tcggcgacgt gatgcgcatt
     1681 atgcccggcg cgctggttca catgcaggtt gaacagcccg ttgccggcga gggcgcggaa
     1741 aaactcctcg ataagctggg tgtccatctg ccccagcatc gggcgctcga aattaacgtt
     1801 ccacaccacg aaggggcggc cggaaaggtc gatggcggct tccaccagcg tctcgtccat
     1861 cggcaccaaa gcatggccga agcgctggat gccgcgcttg tcgccgacg
//
LOCUS       DASQCV010000096         1525 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2671697, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000096 DASQCV010000000
VERSION     DASQCV010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2671697"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..188)
                     /locus_tag="VEQ16_01465"
     CDS             complement(<1..188)
                     /locus_tag="VEQ16_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HYP62521.1"
                     /translation="MARRRAAESLGRDAEDLVAQGLEAQGYKILARRLRTKAGEIDLV
                     VADAARLIFVEVKARNSLA"
     gene            complement(216..1271)
                     /locus_tag="VEQ16_01470"
     CDS             complement(216..1271)
                     /locus_tag="VEQ16_01470"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HYP62522.1"
                     /translation="MKPDRIILLALAVALGFGCLLILLPFLPAMIWAAILVYCLWPVY
                     AWFCRYVRPTIAASVITLVVSALVLVPLVHVALMAAKEARENRSFVTGVMQNGLPPAP
                     AFFLKIPLVGGVLSDFWNNSADDLGGMASSLQPVLGTVAHSGLALLLRATHGLVETVV
                     ALFFAFLFFLSGETIVARVRLVLGRMIDQARLDEMFGLVAATVRGVVVGILGTAAFQG
                     VLYAVGFEVLRAPQPLLFAVLAGLISIVPAGAVVVYVPLCLYMLAVGHPVYAVLLLVY
                     CFVVVGGADSILRPWLIARGAALPYAVTLIGVLGGAISFGALGVFLGPVLLALGLAMA
                     EEFAGQQRGTWRSTAPK"
BASE COUNT          348 a          565 c          401 g          211 t
ORIGIN      
        1 gccaggctgt tccgtgcttt cacctcaacg aagatcagcc gcgccgcatc cgccacaacg
       61 aggtcaatct cccccgcctt ggtccgcaac cgccgcgcca gaattttata gccctgcgcc
      121 tccagcccct gcgccacgag atcctcggca tcgcgcccca ggctctccgc tgcccggcgc
      181 cgggccatcg gccccggttt taccaccccg gctgactatt tcggtgccgt cgagcgccag
      241 gtgccgcgct gctggccggc aaattcctcg gccatggcca agccaagggc gagtagcacc
      301 ggccccagaa acacgcccag cgcgccaaaa ctgatggccc cgcccagcac gccgatcagc
      361 gtcaccgcat aaggcagcgc cgcgccgcgg gcgatcagcc aggggcgcag gatcgagtcg
      421 gcgcccccca ccacgacgaa gcaatagacc agcagcagca ccgcatatac cggatgcccg
      481 accgccagca tgtacaaaca gagcggcaca tacaccacca ccgcccccgc cggcacaatc
      541 gagattaacc ccgccagcac ggcaaacagc agcggctgcg gcgcccgcag cacttcgaac
      601 cccacggcat aaagcacgcc ctggaacgcc gccgtgccga gaatccccac aaccacgccg
      661 cgcactgtcg ccgccacgag tccgaacatc tcatccagcc gtgcctggtc gatcatccgc
      721 cccagcacca gccgcacccg cgccacgatc gtttcgcccg acaggaagaa caggaaggcg
      781 aagaacagcg ccaccacagt ctcgaccagc ccatgcgtcg cccgcagcag cagcgccagg
      841 cccgaatgtg ccactgtgcc cagcaccggt tgcagcgagg aggccatgcc gcccagatca
      901 tccgccgaat tattccagaa atcgctcagc acgccgccca ccagcgggat tttcaggaaa
      961 aaggccggcg ccggcggcaa gccgttctgc atcacccccg tcacgaaact gcgattctcc
     1021 cgcgcctcct tggccgccat cagcgccacg tgcaccaaag gcaccagcac cagagccgac
     1081 accaccagcg tgatgacact ggccgcgatg gtcggccgca catagcggca gaaccacgca
     1141 tagaccggcc acaggcagta gaccaatatc gccgcccaga tcatggccgg caaaaaaggc
     1201 aataaaatca gcaggcaacc aaagcccagc gcaacggcaa gcgccagcag aatgatccgg
     1261 tcaggtttca tgcgctagtg atgcccgagc ttgcccatac ccggcaagac catggagcgc
     1321 ctttctcagc cggaacagta ttttcgacat ttcggccatg cgtagatttc tgtggcgaat
     1381 catcatcttt tatgagatga tgccacacat tatgcgacag ttcagcgcat aagcttaccg
     1441 ttttgtaagg agctcttaat gcgctttaac gaaattggcc agcagctgcg cgcctacagg
     1501 atggaatccg gcctgaaggc cgaag
//
LOCUS       DASQCV010000097         1912 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2837964, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000097 DASQCV010000000
VERSION     DASQCV010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1912
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2837964"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1497
                     /gene="kdpB"
                     /locus_tag="VEQ16_01475"
     CDS             <1..1497
                     /gene="kdpB"
                     /locus_tag="VEQ16_01475"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012813134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HYP62523.1"
                     /translation="LSDEIRVRITANPGQTFLDRMIKLVEGAERQKTPNEIALNILLA
                     GLTLLFLLAVVTLQPFAIYSAAPQDVFVLISLLVCLIPTTIGGLLSAIGIAGMDRLLR
                     RNVLAMSGRAVEAAGDVDILLLDKTGTITLGNRVATEFAPAPGIEEMYLADAAQLASL
                     ADETPEGRSIVVLAKERYSLRGRDLSSHGASFIPFSAQTRMSGVDIDGREIRKGASEA
                     IARYAGGNGLPQEIGQRVTEISSNGGTPLLVAENRRVLGVIALTDVVKGGMRERFDHL
                     RTMGIRTMMITGDNPLTAAAIARQAGVDDFLAEAKPEDKMALIKREQSKGRLVAMTGD
                     GTNDAPALAQADVGVAMNTGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQLLITRGALT
                     TFSVANDVAKYFAIIPAMFAAALPQLNLLNVMRLATPHSAILSAVIFNALIIVALIPL
                     ALRGVRYRPLGAAALLRRNLLIYGLGGIIAPFLGIKAIDLIIRALHLA"
     gene            1505..>1912
                     /locus_tag="VEQ16_01480"
     CDS             1505..>1912
                     /locus_tag="VEQ16_01480"
                     /inference="COORDINATES: protein motif:HMM:NF014699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit C"
                     /protein_id="HYP62524.1"
                     /translation="MKQQLKTALWFTLLTTVIFGLVYPLLVTALAQVLFPKQANGSML
                     EGAASGGSRLIGQPFSSDAYFHPRPSGAGNGYDPMSSGGSNLAPTNHQLADRVRADVA
                     RLEAENPGVPVPVDLVTASASGLDPDISPAAAQF"
BASE COUNT          339 a          616 c          594 g          363 t
ORIGIN      
        1 ctgtccgacg aaatccgggt ccgcatcacc gccaatcccg gacagacgtt tcttgatcgc
       61 atgatcaagc tggtcgaggg ggccgagcgg cagaaaacac ccaatgaaat tgcgctgaac
      121 attctccttg ccggcttgac gctgctcttt ctgctggccg tagtcacgct gcagccgttc
      181 gctatttact cggctgcgcc gcaagacgtt tttgtgctga tctcgctgct ggtctgcctg
      241 attccgacca ccatcggcgg cctgctgtcg gcgatcggga tcgccggcat ggatcgcctg
      301 ctgcggcgca acgttctcgc catgtctggc cgcgctgtag aggccgcggg cgacgtagac
      361 attctgctgc tcgacaaaac gggaaccatc accctcggca atcgcgtggc cacggaattt
      421 gcgcctgccc ccggcatcga ggagatgtat cttgccgatg cagctcagct ggcctcgctc
      481 gccgatgaga cgccggaagg ccgctcgatc gtcgttctgg ccaaagaaag gtacagtttg
      541 cggggccgcg atctctcctc gcatggagcc agcttcattc ccttttcggc gcaaacgcgc
      601 atgtcgggcg tggacatcga cggccgtgaa atccgcaagg gtgcgagcga agccatcgcc
      661 cgctacgcgg gaggaaacgg actgccgcag gaaatcgggc agcgcgtcac cgagatctcg
      721 agcaacggcg gcacgcccct gctggtggcc gagaaccgcc gcgtactggg ggtgattgcc
      781 ctgactgacg tggtaaaggg cggaatgagg gagcgcttcg atcacctgcg caccatgggc
      841 attcgcacca tgatgatcac cggcgacaat ccgctgaccg ccgccgcgat cgcgcgccag
      901 gcaggcgtgg atgattttct ggcggaggcc aagccggaag acaagatggc gctgatcaag
      961 cgggaacagt cgaagggccg cctggtggcg atgaccgggg acggcaccaa cgacgcgccg
     1021 gcactggcgc aagccgacgt gggtgtggcc atgaacaccg gcacccaggc ggccaaagag
     1081 gccgggaata tggtggacct cgactccaat ccgaccaagc tcattgaaat tgtggagatc
     1141 ggaaagcagt tgctgatcac gcgcggagct ttgaccacct tttcggtggc caatgatgtg
     1201 gccaagtatt tcgccatcat tccggccatg tttgcggctg ctcttccgca gctgaacctg
     1261 ctgaacgtca tgcgcctggc cacccctcac tccgcgatcc tgtccgcggt catcttcaac
     1321 gcgctgatca tcgtggcgct gatcccgctg gccctgcgcg gcgtgcgcta ccgtccgctc
     1381 ggcgcagcgg cgttgctgcg ccggaatctg ctcatttacg ggctgggcgg aatcatcgcg
     1441 ccgtttctgg gcatcaaggc cattgacttg atcattcgcg cgctgcatct cgcatagagg
     1501 agccatgaaa cagcaactca agaccgcact gtggttcacc cttctgacga cggtgatctt
     1561 tggcctcgtc tatccgctcc tggtcaccgc gctggcgcag gttcttttcc ctaagcaggc
     1621 caacggcagc atgctcgagg gcgccgcgtc cggcggttcg cgcctgatag gccagccgtt
     1681 ttcctcggac gcctactttc atccgcgccc ctcgggggcg ggaaacggct acgatccgat
     1741 gagcagcggc ggctcgaacc tggctccgac caaccatcag ctggccgacc gcgtgcgcgc
     1801 ggatgtggcc aggctcgaag ccgaaaatcc gggagttccc gtcccggttg acctggtgac
     1861 ggcctccgct tccggcctgg atccggacat ttcccccgcg gcggcacagt tt
//
LOCUS       DASQCV010000098         1709 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1346443, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000098 DASQCV010000000
VERSION     DASQCV010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1346443"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..222)
                     /locus_tag="VEQ16_01485"
     CDS             complement(<1..222)
                     /locus_tag="VEQ16_01485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62525.1"
                     /translation="MTYPVRNAGQPADYGRQKARTLETGGRGTRRLAGLGRTALLVAA
                     ALPLLASPAFANSPAQNEVTREFQKTVTLT"
     gene            complement(219..875)
                     /locus_tag="VEQ16_01490"
     CDS             complement(219..875)
                     /locus_tag="VEQ16_01490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62526.1"
                     /translation="MNIDCNDRERIFLDGTPEEWAALEAHSGRCSACREELEAWRDLS
                     VAASLLHQEWDSPALWPRIERALREQAPAGGASWWERLLGSWRLPSLAWQTAAAALVL
                     MLLSASALWVIWHRNSDSIAGPLLTDRAVRNVEEKEAAYEAAIDKLDAEARPELDKAS
                     TPLMASYREKLQVLDSAIADLKAQAGMNPANGHLRRQLLAMYQEKQFTLEEVLEAKQP
                     "
     gene            complement(882..1565)
                     /locus_tag="VEQ16_01495"
     CDS             complement(882..1565)
                     /locus_tag="VEQ16_01495"
                     /inference="COORDINATES: protein motif:HMM:NF019265.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HYP62527.1"
                     /translation="MGTMGLRLPWEARISLGRVPRGPVESRETTAGVSSSDAQASRDD
                     SALAAACRAGDLRAFEELYRLHGARMKSMARNLLGTPADAEDAVQDTFLKIQRSIATF
                     RGQSSFLTWSFRILINTCYDRRRSRMRKREVPQDEPQAGESAPRPEPRAPAAHPSLKL
                     ALERAVAQLTPQQRDVFLMYEVEGMRHSEIAGVLEISETASKNTLFQAKKNLRHMLEA
                     PRSSAAEAR"
BASE COUNT          273 a          568 c          555 g          313 t
ORIGIN      
        1 tgtgagcgtc accgtcttct gaaactcgcg cgtaacttca ttctgcgccg ggctattggc
       61 aaaggccggg gaagccagaa gcggcagggc cgccgcgacc aggagcgcgg tgcgcccgag
      121 cccggccagg cggcgggtgc cgcggccccc ggtttctagc gtacgggctt tctgccggcc
      181 gtaatcggcc ggctgcccgg catttcggac tgggtaagtc acggttgttt tgcctccaag
      241 acctcttcca gcgtgaactg cttttcctgg tacatggcaa gcagctggcg gcgcagatgg
      301 ccgttggcgg gattcatgcc cgcctgcgct ttcaaatccg cgatagcgct gtcgagcacc
      361 tgcagctttt cgcgatagct ggccatcagc ggcgtggaag ccttgtccag ttcgggacgc
      421 gcttcggcgt cgagcttgtc gatcgctgcc tcgtaggccg cttctttttc ttccacattg
      481 cgcactgccc ggtccgtcag aagcggcccc gcaatcgagt ctgagttgcg atgccaaatg
      541 acccagagcg ccgaagcgga cagcagcatc agcaccagcg cggccgcggc ggtctgccag
      601 gctagggacg gcaggcgcca gcttccgagc agtcgttccc accaggaagc cccgcctgcc
      661 ggcgcttgct cgcgaagcgc ccgctcgatg cgcggccaaa gcgccggcga gtcccattcc
      721 tggtgcagga gggacgcggc gaccgacaga tcccgccagg cctccagttc ttcacggcag
      781 gcggagcagc ggccggaatg ggcctccagc gccgcccact cctccggcgt gccgtccaga
      841 aaaattcgtt cgcgatcgtt gcagtcgata ttcatggcgg gttacctggc ctcggcggcg
      901 ctgctgcgcg gcgcctcgag catgtggcgc aaattcttct tggcctgaaa aagagtattc
      961 ttcgaagcgg tctcgctgat ctcgagcacc cccgcgattt ccgagtgccg catgccttcg
     1021 acttcgtaca tcagaaaaac gtcgcgttgc tgcggcgtca gctgcgcgac ggcgcgttcg
     1081 agcgccagct tgagcgacgg atgcgcggca ggggctcgcg gctccggccg cggcgccgac
     1141 tccccggcct gcggctcatc ctgcgggact tcccgcttgc gcatccggct gcgccgcctg
     1201 tcgtagcagg tgttgatcag gatgcggaac gaccaggtca ggaaactcga ttgcccgcga
     1261 aacgtggcga tgctgcgctg aatcttgagg aaggtgtcct gcaccgcgtc ttcggcatcg
     1321 gcgggcgtac ccagcaggtt ccgcgccatg gacttcatgc gcgcgccgtg cagccggtag
     1381 agctcttcga acgcgcgcag atcgccggct cggcaagctg cggccagcgc agaatcgtcc
     1441 ctggacgcct gcgcgtcaga agaggaaacc cctgcggtcg tctcccttga ttccaccggc
     1501 ccccttggca cccgcccgag ggagattcta gcttcccagg gcagccgaag tcccatcgtt
     1561 cccattcgcg gctcctaggg tatagacgat aggacggggc caggtgtcag gggcaggctt
     1621 tcgccgcgcg aagcccggca agccgttaga aaccagcggt ttagctctgt cgggttagaa
     1681 actctgcgcc gcgatatcct gcggcagcg
//
LOCUS       DASQCV010000099         2663 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_185224, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000099 DASQCV010000000
VERSION     DASQCV010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2663
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185224"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..932)
                     /locus_tag="VEQ16_01500"
     CDS             complement(<1..932)
                     /locus_tag="VEQ16_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008491962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYP62528.1"
                     /translation="MTSLVVLDFDATGIKQPARSAVAAAAKLGGEVHVLVAGANVGDT
                     PAAAAKIAGVSKVLVADDASLTHELAEPTAALLVALAPNYSHILQAATAAGKNTLPRA
                     AALLDVQVISDISGVVDADTFVRPIYAGNALATVKSSDAKKVLTVRAASFDPAAAEGG
                     NAAIETVTVPGTEQKSKYIGSELSKSERPELTAAKIIVSGGRGMQNGENFTKLIEPIA
                     DKLGAAVGASRAAVDAGYVPNDYQVGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVI
                     VAINKDEDAPIFQIADYGLVADLFTALPELEKAL"
     gene            complement(937..1686)
                     /locus_tag="VEQ16_01505"
     CDS             complement(937..1686)
                     /locus_tag="VEQ16_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019461986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HYP62529.1"
                     /translation="MKLLVAVKRVVDYNVKVRVKSDKSGVETAGVKMSMNPFDEIAVE
                     EAVRLKEKGIATEIVAVSVGVNQAQETIRTALAMGADRGVLVETDVAVEPLAVAKLLK
                     AIAEKEGAELIVLGKQAIDDDFNATGQALAALLGWPQGTFASKVEIGGGNATVTREVD
                     GGLETVELKLPAVVTADLRLNEPRYASLPNIMKARKKPIDILKPDDLGVDVTPRLTVV
                     SVSEPPARKAGIKVPDVATLVEKLRNEAKVI"
     gene            complement(1774..>2663)
                     /locus_tag="VEQ16_01510"
     CDS             complement(1774..>2663)
                     /locus_tag="VEQ16_01510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019460328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYP62530.1"
                     /translation="SRRVAVTTGASGAFPLAFLAAFEAGDEVALAAPYYPPYLNILMA
                     LGLKPVVLPCGVETGFQPTVAMLEALPLRPAGLILASPANPTGSMLSPEALRELAVYC
                     DVKGIRLISDEIYHGLTYGKPAASAAQFSSSAIVINSFSKYFSMTGWRVGWLVMPEDL
                     IRPVERLAQNLFISAPYASQVAAEAALGCHEELQRHRATYAASRDILIKGLQRAGFTS
                     FPPPDGAFYIYVDISAHGDDSADFCARLLAEQNIASTPGHDFDAARGQHYVRLSYCAP
                     LPDIEEAVRRLHRFAQAGG"
BASE COUNT          502 a          891 c          797 g          473 t
ORIGIN      
        1 tacagtgcct tttccagttc ggggagggcg gtgaagagat ctgcgacgag gccataatcg
       61 gcgatctgga agatcggcgc gtcctcatcc ttgttgatgg cgacgatcac cttgctgtcc
      121 ttcatgccgg ccagatgctg gatggcaccg gaaatgccga ccgcgatgta gagctgcggg
      181 gcgacgatct tgcctgtctg gccgacctgg tagtcgttcg gcacatagcc cgcatccacg
      241 gccgcgcgcg aggcgccgac ggcggcaccc agcttgtcgg caatcggctc gatgagcttg
      301 gtgaaattct caccattctg catgccgcgc ccgccagaga cgatgatctt cgccgcggtc
      361 agctcaggac gctcgctctt ggacagctcg gagccgatat atttggattt ctgctccgtg
      421 cccggcaccg tcacggtctc gatggcagcg ttaccgccct cggccgccgc cgggtcgaag
      481 ctggcggcgc gcaccgtcag caccttcttg gcatccgaag acttcaccgt ggccagcgca
      541 ttaccggcat agatggggcg cacgaacgtg tcggcatcca ccacgccgga aatgtcggag
      601 atcacctgca cgtccagcag ggcggcggcg cggggcagcg tgttcttgcc cgcggcggtc
      661 gcggcctgga ggatgtggct gtaattcggc gccagcgcca ccagcagggc ggcggtcggc
      721 tcggccagct catgcgtcag cgacgcatcg tcggccacca gcactttgct cacaccagca
      781 atcttggcgg cggcggcagg cgtgtcgccc acattggcgc cggcgaccag cacatgcacc
      841 tcgccaccca gcttggcggc ggcggccacg gcagagcggg ccggctgctt gatgccggtg
      901 gcatcgaaat cgagaacaac gagagaggtc atggcgttag atcactttcg cttcgttacg
      961 cagtttttca acgagggtgg ccacatccgg caccttgatg ccggccttgc gggcgggcgg
     1021 ctcggacacg ctgaccacgg tcaggcgcgg cgtcacgtcc acgccgaggt catccggctt
     1081 caggatgtcg atcggcttct tgcgcgcctt catgatgttc ggcaacgacg catagcgcgg
     1141 ctcgttgagg cgcagatcag cggtgaccac ggccgggagc ttcagctcca ccgtctccag
     1201 cccgccatcc acctcgcggg tcacggtggc gttgccgccg ccaatctcca ccttcgaggc
     1261 aaacgtgccc tgcggccagc ccagcagggc ggcgagcgcc tggccagtgg cgttgaaatc
     1321 atcatcgatg gcctgcttgc cgagcacgat cagctcggcc ccttccttct cggcgatggc
     1381 cttcagcagc ttggcgaccg ccagcggctc cacggccaca tcggtctcca ccagcacacc
     1441 gcggtcagca cccatggcga gcgcggtgcg gatggtctcc tgcgcctggt tcaccccgac
     1501 cgacacagcc acgatctcgg tcgcaatccc cttctccttc aggcggaccg cttcctcaac
     1561 ggcaatctcg tcaaacggat tcatcgacat cttcacgccg gcagtctcaa caccggactt
     1621 gtccgacttc acccggacct tcacgttgta atcaacaacc cgcttaacgg cgaccagcag
     1681 tttcattctc ttctctacct tggttatgcc ctgaaattat aagtgcggcc ttgatattgg
     1741 aagtttccgc gcctgcaaag cccaaagggc aaatcagccg ccagcttgcg cgaaccgatg
     1801 cagccggcgt accgcctctt caatatccgg caagggcgcg caatagctaa gccgcacata
     1861 atgctggcct cgtgccgcgt cgaaatcatg cccgggcgtg ctggcgatat tttgctccgc
     1921 cagcagccgg gcacagaaat cggcgctgtc gtcgccatgg gcgctgatat ccacataaat
     1981 gtagaaggca ccgtcaggcg gcgggaaaga ggtaaacccg gcgcgctgca accccttgat
     2041 gagaatatcg cgtgaggccg cataggtggc gcgatggcgc tgcagctcct catggcagcc
     2101 aagcgccgcc tcggctgcga cctggctcgc ataaggtgct gaaataaaca ggttttgcgc
     2161 caggcgctcg accgggcgga taagatcctc cggcatcacc aaccagccca cgcgccagcc
     2221 tgtcatggaa aaatatttgg aaaaggagtt gatgacgatc gcgctggagg aaaattgcgc
     2281 ggcactcgcg gccggcttgc cataggtcag cccatggtag atctcatccg agatcagcct
     2341 tatccccttc acatcacaat aaaccgccag ttcgcgcagt gcttccggcg agagcatgga
     2401 gcccgtcggg ttggccggac tcgccagaat caaccccgcc gggcgaagcg gcagagcctc
     2461 cagcatcgcc actgtgggct gaaaccccgt ctccaccccg caaggcagca ccaccggctt
     2521 caaccccagc gccatcagga tattcagata aggcggataa taaggtgctg ccaaagccac
     2581 ctcatctccc gcctcgaacg ccgccagaaa ggcgagcgga aacgccccgg acgcccccgt
     2641 ggttaccgcc acccggcggg agg
//
LOCUS       DASQCV010000100         4194 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_849043, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000100 DASQCV010000000
VERSION     DASQCV010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4194)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4194)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4194
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_849043"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(236..883)
                     /locus_tag="VEQ16_01515"
     CDS             complement(236..883)
                     /locus_tag="VEQ16_01515"
                     /inference="COORDINATES: protein motif:HMM:NF039921.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP62531.1"
                     /translation="MKKTNKDGQAIGRKGAESRARLLAATRQLLIELPSARKLTASSI
                     ARAAGLASQTFYLYFDDVEEVLFCLSEEASADTTEIIEALDSSWDPAAPNAYTQPVVA
                     AFYRYWDRHRPILNIRNYMADRGDEAFATLRNESAIPIILRIAQRIRTGQGEARLSER
                     DSTARAIIIFSAIERMAGRYANNPGLHLMPSSEEMKRAEADILALLMSPAPVVAL"
     gene            complement(962..2650)
                     /locus_tag="VEQ16_01520"
     CDS             complement(962..2650)
                     /locus_tag="VEQ16_01520"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYP62532.1"
                     /translation="MSGFDETFDFVVAGSGGGSMCAALMMRKLGKSVLILEKSALIGG
                     TTARSGGVMWIPNNRFMKEDGVEDSYEKAAAYLDATSGQDDLPGSTPERRAAYLRESP
                     KMLDFLVEQGIKLRRIPHYPDYHDNLPGGSAPGRTVVAELFNVNELPDGWAAKLRPSA
                     IPFPAHLDELYWLPTLTRSTKGKINLAKIMLRGMVAKLTGKAIAPAGRALQGRMLKAA
                     LQAGADIRVSTGVASLIMEDGAVKGVVTESGKRIGAHLGVLINAGGFAQNQEMRDKYM
                     PGTSAKWTGTVAEDTGAMIQEMMAKGAAVAQMDTAVGCQMALPPGRENPGDGVIFGTF
                     GGQMDIAKPHSIIVDQTGVRYMSEGSSYTEFCATQRRRNEQVPAIPSLWIVDEQYMKT
                     YMFLGTMPGKPKKQEWYDSGFMKKADSIEELAVLCNIPPATLKATVDNFNADVRAGVD
                     RQFHRGEREFDKWLGDAVAKGNPSLGTIEQGPFYAIQVVPGDVSTTGGVVTDANGRVL
                     REDGTPIQGLYATGTSTASVFGRYATGAGSNIGPSFTWGYVAARHAANADNLAG"
     gene            complement(2815..3045)
                     /locus_tag="VEQ16_01525"
     CDS             complement(2815..3045)
                     /locus_tag="VEQ16_01525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012976603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HYP62533.1"
                     /translation="MATEIILPKIGFSMTEGVLSEWLVADGTTVAEGQPIFTLESDKS
                     TNEVESPAAGTIKITGVPGETYEVGAIIGTIE"
     gene            complement(3192..>4194)
                     /locus_tag="VEQ16_01530"
     CDS             complement(3192..>4194)
                     /locus_tag="VEQ16_01530"
                     /EC_number="1.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012976666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HYP62534.1"
                     /translation="SETTVETKKITIIQAINEAIAEAMEADPKVIVLGEDVADREGGG
                     VVGVTRGLSTKFGDERVRSTPITEQAIIGAAIGASIGGYKPVAEIMLMNFTTVAMDMI
                     VNHAAKLRFMSGGQTGVPIVIRMMTGAGISSAGQHSDFLEAWFAHTPGMKVVMPSNPE
                     DAKGLMLSAIADPDPVMFVECTRAYFTPYETPVKVAPIPLGKAKVTRQGTDVTIISYS
                     EIFLRATAAAAELAKEGISAELIDLRTISPWDRETVLASVRKTGRAVIAHEAVKQFGV
                     GAEIAAVLQDELFGVLKAPVKRLGAPFTSVPFSQVLEQAFLVSTADIVAAAKATLGK"
BASE COUNT          741 a         1280 c         1357 g          816 t
ORIGIN      
        1 ccacccagcg cggtgccttg ggctgtgaat ttgcagtcca gggcgaattt attgcccgaa
       61 atgtcgcccg tcacatgcca gctgccgccc gcatccgcca tcgccggcgc cgccacggcg
      121 caggccagaa acagcgccaa gccagggagt ccatgtttca tgcatccctc cttgaggcgg
      181 ccccgccggc cgcgattcac gctataaggc ggcggcgcgg cgcgaaatca agcgcctaca
      241 gcgccaccac gggtgcgggg gacattagca gcgccagaat atccgcctcg gcccgcttca
      301 tctcttcgct gctcggcatc agatgcagcc ctggattatt ggcatagcgc cccgccatgc
      361 gctcgatggc cgagaaaatg atgatggcgc gcgccgtaga atcccgctcg ctcagccgcg
      421 cctcaccctg gccggtgcga atccgctgcg cgatacggag gatgatgggg atcgcgctct
      481 cattgcgcag agtggcaaag gcctcgtcgc cgcggtcggc catatagttg cggatgttca
      541 gaatcggccg gtgccggtcc caatagcggt agaaggcggc caccacgggc tgcgtatagg
      601 cattgggcgc cgccgggtcc cagctgctgt ccagcgcctc gataatctcg gtggtgtcgg
      661 ccgaagcctc ttccgacagg cagaacagga cctcctcgac gtcgtcgaaa tagagataga
      721 aggtctgcga ggcgaggcca gcggcgcgcg cgatggaact cgccgtcagt ttcctggcgg
      781 aaggcagctc aatgagcagc tggcgtgtgg cggccagcag ccgggcacgg ctttccgcgc
      841 ccttgcgacc gatggcctgc ccgtctttgt tggtcttttt catgacaaag tcatcgatgc
      901 cggatcacgc gccatcctgc aagcccggac catcaattgg cccgggccgt gccggcatga
      961 ttcacccggc caggttgtcc gcattggccg catgccgggc ggcgacatag ccccaggtga
     1021 aggaggggcc gatattcgag ccggcgccgg tggcgtagcg gccgaagacg gaggcggtgg
     1081 aggtgccggt ggcgtagagg ccctggatgg gggtgccgtc ttcgcgcagc acgcggccat
     1141 tggcgtcggt caccacgccg ccggtggtgc tgacgtcgcc ggggacgacc tggatggcgt
     1201 agaacgggcc ctgctcgatg gtgccgagcg aggggttgcc tttggcgacg gcgtcgccca
     1261 gccatttgtc gaattcacgc tcgccgcggt ggaactggcg gtccacgccg gcacgaacat
     1321 cggcgttgaa attatcgacc gtagccttga gggtggcggg agggatgttg cagagaacgg
     1381 cgagttcctc gatgctgtcg gcttttttca taaagccgga atcgtaccat tcctgcttct
     1441 tcggcttgcc cggcatggtg ccgaggaaca tgtaggtttt catatattgc tcatcgacaa
     1501 tccagaggct cgggatggcc gggacctgtt cgttgcggcg gcgctgggtg gcgcagaatt
     1561 cggtgtagga actgccctcg ctcatatagc gcacgccggt ctggtcgacg atgatggaat
     1621 gcggcttggc gatgtccatc tgcccgccga acgtgccgaa gatgacgccg tcgccggggt
     1681 tttcgcggcc ggggggcaag gccatctggc agccgacggc ggtatccatc tgcgccacgg
     1741 ccgcaccttt ggccatcatt tcctggatca tggcaccagt gtcttccgcg acggtgccgg
     1801 tccatttggc ggaggtgcca ggcatgtatt tgtcgcgcat ttcctggttc tgggcgaagc
     1861 cgccggcgtt gatgagcacg ccgaggtggg cgccgatacg cttgccggat tcagtgacga
     1921 cgcctttgac agcgccgtct tccatgatga gcgaggcaac gccggtgctg acacggatat
     1981 cggcgccggc ctgaagtgcc gccttgagca tgcggccctg caaggcgcgg ccggcgggcg
     2041 cgatggcttt gccggtgagt ttggccacca tcccgcgcag catgattttc gcgaggttga
     2101 tcttgccttt ggtcgagcgc gtaagggtgg gcaaccagta gagctcgtcc agatgcgccg
     2161 ggaaggggat ggcgctggga cgcagcttgg cggcccagcc atccggcagc tcattcacat
     2221 tgaacaattc agcgacgacg gtgcggccgg gggcggagcc gcctggcaga ttgtcgtgat
     2281 aatccgggta atgcgggatg cggcgcagct taatgccctg ctcgaccagg aagtcgagca
     2341 ttttagggct ctcgcggaga taggccgcgc ggcgctccgg ggtggaaccg ggcaaatcgt
     2401 cctggccgga cgtggcgtcc aggtaggcag cggccttctc gtaggaatcc tcgacgccgt
     2461 cttccttcat gaagcggttg ttggggatcc acatcacacc gccggagcgg gcagtggtgc
     2521 cgccgatcag agccgatttt tcgagaatca gcacgctttt gccaagcttg cgcatcatca
     2581 gcgccgcgca catcgaaccg ccgccactgc cggcgacaac gaaatcgaat gtttcgtcaa
     2641 acccgctcat ctggccgctc ccccattttt ggtttcgtaa cgcagattaa actctggttt
     2701 ttgaatttca acggttgcgg cgcgccaggc caagcctggc gcgccgcaac aatggtttta
     2761 tcgtccggac gttatacggc cccgtagcac aatgagcgcc acgggccgca tgaattactc
     2821 gatggtgccg ataatggcgc cgacttcgta ggtctcaccc ggcacgccgg tgatcttgat
     2881 ggtgccagcg gcgggagatt cgacctcgtt ggttgatttg tcactctcga gcgtgaaaat
     2941 gggctggccc tcggccacgg tcgtgccatc ggccaccagc cattcggaca acacgccttc
     3001 agtcatggaa aagccgatct tgggaaggat gatctcggtc gccataaaat tcctcttatc
     3061 ttctgcgggc cagggttttt ctccggcggc ttgcctgaac aagcaaccag catggaaaaa
     3121 cccatgcctg tacgtgcatc tttcgtcaac gccagcctgg ctgtttgccg ctgccaggct
     3181 ggcttttgcg gttattttcc gagagtcgcc tttgccgcgg cgacgatatc ggcagtgctg
     3241 acgaggaagg cttgctccag cacctggctg aagggcacgg aggtgaaggg cgcacccagg
     3301 cgcttcaccg gcgccttcag cacgccgaac aattcatcct gcagcacagc ggcaatttcc
     3361 gcaccgacgc cgaactgctt caccgcctca tgggcgatga cggcgcggcc ggtcttacgc
     3421 accgaggcca gaaccgtttc gcggtcccag ggcgagatgg tgcgcaaatc gatcaactcg
     3481 gcggagatgc cttccttggc cagctccgcg gcggccgcag tggcgcggag gaagatctcc
     3541 gaatagctga tgatggtgac gtcagtgcct tgcctagtca ccttggcctt gccgagcgga
     3601 atgggggcaa ccttcaccgg ggtctcatac ggcgtgaagt aagcgcgggt acattccacg
     3661 aacatgaccg ggtccggatc ggcaatggcg gagagcatca gccccttcgc atcttccggg
     3721 ttggacggca tgacgacctt catgcccggc gtatgcgcga accaagcctc aagaaaatcc
     3781 gaatgctggc cagcggagga aatgcccgca ccggtcatca tgcggatgac gatgggtacg
     3841 ccggtctggc cgccggacat gaagcgcaat ttcgccgcat ggttgacgat catgtccatc
     3901 gccaccgtgg tgaaattcat cagcatgatt tccgccaccg gcttgtagcc gccgatggag
     3961 gcgccgatgg cggcgccgat gatggcctgc tcggtgatcg gcgtggagcg cacgcgctca
     4021 tcaccaaact tggtggagag accgcgcgtg acaccgacaa cgccgccgcc ttcgcggtcg
     4081 gccacgtcct cgcccagcac aatcactttc ggatcggctt ccatggcctc ggcaatcgcc
     4141 tcgttgatcg cctggatgat ggtgattttc ttggtttcaa ccgtggtctc agac
//
LOCUS       DASQCV010000101         1603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_351674, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000101 DASQCV010000000
VERSION     DASQCV010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351674"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..263)
                     /locus_tag="VEQ16_01535"
     CDS             complement(<1..263)
                     /locus_tag="VEQ16_01535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62535.1"
                     /translation="MDETAQLALRGIFRGLHLAGYFTAFGAMFLPAAPLRAGTVPGLK
                     YLAWAGLGLALIAGGAWFWLQTAYFASAQNVADVVAAAPSVLQ"
     gene            complement(346..897)
                     /locus_tag="VEQ16_01540"
     CDS             complement(346..897)
                     /locus_tag="VEQ16_01540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3035 domain-containing protein"
                     /protein_id="HYP62536.1"
                     /translation="MNMLRAAASASTLVLALALAGCSDSTKKEFGLEANPPDAFQVGV
                     QPPLSLPPELGQLPPPNPGEPRPQAVDAAQEGASVFSPGGAAAGSESPGEQALLQQAG
                     PTPPASIRAQVNQNALIASKPPGFVSSLMGNGPAPTPVVNAPAEQQRLQENEALGQPV
                     TNGTTPQQTDQNEGLFHRFLDLF"
     gene            complement(907..1395)
                     /gene="lspA"
                     /locus_tag="VEQ16_01545"
     CDS             complement(907..1395)
                     /gene="lspA"
                     /locus_tag="VEQ16_01545"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006558538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HYP62537.1"
                     /translation="MRRFIGFAIALLVLAADQVSKYAVLHPLHLWDGHMLVVLPVLDF
                     VLVWNHGITFGMFAGTASKVLLATGASIVVLALFGWLWRTRSWVVTIAVGAITGGAIG
                     NVLDRLRFGAVVDFIHVHVGTVAYPWVFNVGDSAIVCGVIALMLDSLLSKPPVAANQG
                     EG"
     gene            complement(1395..>1603)
                     /locus_tag="VEQ16_01550"
     CDS             complement(1395..>1603)
                     /locus_tag="VEQ16_01550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HYP62538.1"
                     /translation="LSAEAKALDGDTSFWSDICITSSAVFGAASSAAIAPGSKCERCW
                     RVLPEVGQDAAHPTLCIRCCEAVG"
BASE COUNT          334 a          529 c          488 g          252 t
ORIGIN      
        1 tattggagca cggacggcgc agcagccaca acgtccgcga cattctgcgc cgacgcgaaa
       61 taagcggttt gcagccaaaa ccaggcgccg cccgcgatca gcgccagccc cagcccggcc
      121 caggctagat atttgagccc aggcaccgtt ccagcacgca atggcgctgc tggtaggaac
      181 atcgcgccaa atgccgtgaa atagcctgcc agatgcagac cgcggaaaat gccccgcagc
      241 gccagttggg ccgtttcatc catattggcg ctcctcccct atctgttcga ggttttgggc
      301 ctataccccc caaaacctta ccaaatggga aggttgagca aaacctcaga acaggtccaa
      361 gaagcggtgg aacagacctt cgttctggtc tgtctgctgc ggcgtcgtcc cgttggtgac
      421 aggctgaccc aatgcctcgt tctcctgcaa gcgctgctgc tcggccgggg cattcaccac
      481 gggcgtcgga gccgggccgt tgcccatcaa gctggagacg aagcctggcg gcttgctggc
      541 gatcagcgcg ttctggttca cctgagcccg gatgctcgcc ggcggcgtgg ggccggcttg
      601 ctgcagcaga gcctgttcgc cgggtgactc gcttcctgcc gcggctcctc ccggtgagaa
      661 caccgaagca ccttcctggg cggcgtcaac cgcctgcgga cggggctcgc cggggttggg
      721 aggcggcaac tggccaagct ccggcggtag cgacaaaggc ggctgcacac cgacctgaaa
      781 agcgtcgggc gggttggcct cgaggccaaa ttccttcttg gtcgagtcgc tgcacccggc
      841 aagagcgagg gcaaggacaa gcgtggaggc ggaggcagcg gcgcggagca tgttcatgtg
      901 gccttcctat ccttccccct gatttgccgc aacggggggc ttgctcagca aactgtccag
      961 catgagggcg atgacgccgc acacaatcgc ggaatccccg acattgaaaa cccaagggta
     1021 agcaaccgtc ccgacatgga catggatgaa atccaccacg gcaccaaaac gcaggcggtc
     1081 cagcacattg ccgatggccc cgcccgttat ggcccccacc gcaatggtga cgacccagct
     1141 gcgcgtgcgc cacagccagc cgaacaaggc cagcacaacg atggatgcgc cggtggcgag
     1201 cagcaccttg ctcgccgtcc cggcaaacat gccgaaggtg atgccgtgat tccagaccag
     1261 cacgaaatcg agcacaggca ggaccaccag catatgccca tcccacagat gcagcggatg
     1321 cagcacggca tatttgctca cctggtcagc ggccaggacg agcaaggcaa tggcgaagcc
     1381 gatgaagcgg cgcatcaacc gaccgcctcg cagcagcgga tgcagagtgt cgggtgcgcc
     1441 gcatcctgcc ccacttccgg cagcacgcgc cagcagcgtt cacatttgct ccccggtgca
     1501 atggctgcgc tgctggcggc gccaaacacc gcgctcgagg taatgcagat atccgaccag
     1561 aatgacgtat ccccatccaa tgccttggcc tcggcagaca aaa
//
LOCUS       DASQCV010000102         1509 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_849434, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000102 DASQCV010000000
VERSION     DASQCV010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_849434"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1509)
                     /gene="kdpB"
                     /locus_tag="VEQ16_01555"
     CDS             complement(<1..>1509)
                     /gene="kdpB"
                     /locus_tag="VEQ16_01555"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012813134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HYP62539.1"
                     /translation="EDVAASQLRQGDIVVCEPGDIIPGDGEVIEGIASVDESAITGES
                     APVIRESGGDRSAVTGGTKVLSDWVRIRITSNPGETFLDRMIALVEGAQRQKTPNEIA
                     LNIVIAGLTLVFLLAVVTLQPFAIYSVTTSGAGTAPSVTVLISLLVCLIPTTIGGLLS
                     AIGIAGMDRVMQHNVLAMSGKAVEAAGDVNSLLLDKTGTITLGNRQAVEFIAMDGVSE
                     AELADAAQLSSLADETPEGRSIVVLAKEKYNIRGREVAEHEAHFIPFTAQTRMSGVDM
                     DGRRIRKGATESVAEFVHEHGGQVPPQLIEITDRISRFGGTPLVVADGGRALGVVHLK
                     DVVKGGMRERFAQLRAMGIRTIMITGDNPLTASAIAAEAGVDDFLAQATPKDKMDLIK
                     KEQAQGKLVAMTGDGTNDAPALAQSDVGVAMNTGTQAAKEAGNMVDLDSNPTKLLEIV
                     EIGKQLLMTRGSLTTFSIANDVAKYFAIIPAMFAGTFPVLNALNIMHLATPE"
BASE COUNT          255 a          478 c          488 g          288 t
ORIGIN      
        1 attcaggcgt tgccaggtgc atgatgttca gcgcattcag caccgggaac gttcccgcga
       61 acatggccgg gatgatggcg aagtacttgg ccacgtcgtt ggcgatggag aacgtggtga
      121 gcgagccgcg cgtcatcagc agctgcttgc cgatctcgac aatctcaagc agcttcgtgg
      181 ggttggagtc gagatccacc atattgccgg cttccttggc tgcctgggtg ccggtattca
      241 tggcaacgcc cacgtccgat tgcgcgagag ccggcgcgtc gttggtgccg tcaccggtca
      301 tggcgaccag cttcccctgg gcctgctctt tcttgatcag gtccatcttg tctttgggcg
      361 tggcctgggc caaaaagtcg tccacgccgg cttcggcggc gatggcggaa gcggtcagcg
      421 ggttgtcgcc ggtgatcatg atggtgcgga tgcccatggc gcgcagctgc gcgaagcgct
      481 cacgcatgcc gcccttcacg acgtccttga ggtggacgac gccaagcgca cgaccgccat
      541 cggcaaccac cagcggggtg ccgccgaaac gcgagatgcg atcggtgatc tcaatcaact
      601 gcggcgggac ctggccgccg tgctcgtgca cgaattcggc aacgctctcg gtggcgccct
      661 tgcgaatccg gcggccatcc atgtccacac cgctcatgcg cgtttgcgcg gtgaacggaa
      721 tgaaatgggc ttcgtgctcg gcgacctcgc gcccgcgaat gttgtacttc tccttggcga
      781 gcacgacgat ggagcggcct tccggggtct catcggcgag gctggaaagc tgggcggcgt
      841 cggccaattc ggcctcgcta acgccatcca tggcgatgaa ttccacggcc tggcggttgc
      901 cgagcgtgat ggtgccggtc ttatccagca acaggctgtt gacgtcgccg gcggcctcca
      961 cggccttgcc gctcatggcg agcacattgt gctgcatgac gcggtccatg ccggcgatcc
     1021 cgatggcgga gagcaatccg ccgatggtgg tcggaatcag gcagaccagc agggaaatca
     1081 ggaccgtcac cgaaggcgcg gtgccggcgc cgctggtagt gacactgtag atggcgaagg
     1141 gctgcagggt caccaccgcc agcaggaaga ccagcgtgag gccggcgatc acgatattca
     1201 gcgcgatctc attgggcgtc ttctgccgct gcgcgccctc caccagagcg atcatgcgat
     1261 ccaggaacgt ctcgccggga ttggaggtga tgcgaatcct gacccagtcc gagagcacct
     1321 tggtcccgcc ggttaccgcg ctgcggtcgc cgccggactc acgaatcacc ggcgcacttt
     1381 cgcccgtaat cgccgattca tccacgctgg cgattccctc gatcacttct ccatcgccag
     1441 ggatgatgtc gcccggttcg cagacgacga tgtcaccctg ccgtagctgg ctggccgcaa
     1501 catcttctt
//
LOCUS       DASQCV010000103         1634 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1347164, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000103 DASQCV010000000
VERSION     DASQCV010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1347164"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..537)
                     /locus_tag="VEQ16_01560"
     CDS             complement(<1..537)
                     /locus_tag="VEQ16_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine synthase A"
                     /protein_id="HYP62540.1"
                     /translation="MSSWALELEYDGTPFMGWQRQKHGLAIQQVVEEAASRLRGGAEV
                     TEAIASGRTDAGVHALAQIVQIELPDLTPFRIREAMNFHLKPHPIVVRRCCIAPEGWN
                     ARFSAIGRAYRYIISNRAVPPALEAGRVWHVRQRLDEAAMQRGAELLLGHHDFSSFRA
                     AACQAKSPMRTLDELTVTR"
     gene            complement(534..1439)
                     /gene="fmt"
                     /locus_tag="VEQ16_01565"
     CDS             complement(534..1439)
                     /gene="fmt"
                     /locus_tag="VEQ16_01565"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HYP62541.1"
                     /translation="MKLAFMGSPEFSVPALQALVAAGHEVVAVYTQPPKPAGRGQKEQ
                     KCPVHQAAEALGLPVRTPAKLRKNEEELAFFRGLGLDAAVVAAYGLILPQAFLDAPQR
                     GCLNIHASLLPRWRGAAPIQAAIAAGDVESGITIMQMEAGLDTGPMLRREGVPIGPRD
                     TAAELHDQLSEVGAKLIIRELAEPSAPIAQSDALATYAAKLSREDARLNFLRPAAELE
                     RLIRAYTPWPGALGLLGEVVIKFLAAEVVQGEGVPGTILDDRLTIACGEGALRPTRLQ
                     RAGKAVMSADDFLRGFSLAPGARFY"
     gene            complement(1525..>1634)
                     /locus_tag="VEQ16_01570"
     CDS             complement(1525..>1634)
                     /locus_tag="VEQ16_01570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HYP62542.1"
                     /translation="DHLNGVLFVDYLTALKRNILLRKLAKAQKELKAKR"
BASE COUNT          283 a          537 c          542 g          272 t
ORIGIN      
        1 cctggtcacg gtcagctcgt ccagcgtgcg catcgggctt ttcgcctggc aggcggcggc
       61 gcggaaggag gagaaatcat ggtggccgag caggagttct gctccgcgct gcatggccgc
      121 ctcgtccagt ctctgccgca catgccagac gcgcccggct tcgagcgccg gcggtacagc
      181 gcggttggaa atgatgtagc gataggcgcg gccgatggcg gagaagcgcg cattccagcc
      241 ctccggtgcg atacagcagc gccgcaccac gatgggatgg ggtttcaggt gaaaattcat
      301 cgcctcgcgg atgcggaaag gcgtcaggtc cggcagctcg atttgcacga tctgggcgag
      361 ggcatgcacc ccggcatcgg tacggccgga ggcgatggcc tccgtcacct cggcgccgcc
      421 acgcaggcgg gaggcggctt cctccaccac ctgctggatg gcaagcccgt gcttctggcg
      481 ctgccagccc atgaaaggcg tgccgtcata ttccagctcc agcgcccagc tgctcaataa
      541 aagcgcgctc cgggggcgag cgaaaaaccg cgcaggaaat cgtctgcgct catcaccgcc
      601 ttgccggcgc gctgcaggcg ggtggggcgc agggcgccct cgccgcaggc gatggtgagg
      661 cggtcatcaa ggatggtgcc ggggacgccc tctccttgca ccacctcggc ggcgagaaat
      721 tttatcacca cctcccccag cagccccaaa gcaccaggcc aaggggtata ggcgcggatc
      781 aaccgctcta attccgcagc ggggcgtaaa aaattcagcc tggcatcctc gcgcgagagt
      841 tttgctgcat aggtcgccag ggcgtcgctc tgggcgatgg gggcgctggg ctcggccagt
      901 tcccggatga tgagttttgc gccaacttcg gacagttggt catgcaattc cgccgccgtg
      961 tcgcgtgggc caatgggcac gccctcgcgg cgcagcatcg ggccggtatc cagcccggcc
     1021 tccatctgca tgatggtgat gccgctctcc acatcaccgg cggcgatggc ggcctgaatg
     1081 ggggcagcgc cacgccagcg cggcagcaag gaggcatgga tgttgaggca gccgcgttgc
     1141 ggcgcgtcga gaaaagcttg cggaaggatc agcccatagg ccgccaccac ggcggcatcg
     1201 agcccgagcc ccctgaaaaa ggccagctcc tcctcattct tgcgcagctt ggccggggta
     1261 cgcacaggca ggccgagcgc ctccgcggcc tgatgcaccg ggcatttctg ctccttctgg
     1321 ccgcgcccgg ccggcttggg gggctgggtg tacaccgcaa ccacctcgtg cccggccgcc
     1381 accagcgcct ggagcgccgg cacggaaaac tccggcgatc ccatgaaggc aagcttcatg
     1441 catgtgatcc ttccggatca aacgcatgag tcatattttg gcacgcggcc gccccaccag
     1501 ccccgcgcgc gatacctggc ggtatcatcg cttggccttc agttccttct gcgccttggc
     1561 caatttgcga agcaggatat tgcgcttcag cgcggtgagg taatcgacga acagcacgcc
     1621 gttgagatgg tcga
//
LOCUS       DASQCV010000104         2677 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2507798, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000104 DASQCV010000000
VERSION     DASQCV010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2677
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2507798"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..418)
                     /locus_tag="VEQ16_01575"
     CDS             complement(<1..418)
                     /locus_tag="VEQ16_01575"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HYP62543.1"
                     /translation="MSQIQEETSRFKVLVNSQGRYALWPEFRAAPAGWQEALGPHPKE
                     DCLDFVAKNERQSQAPTARARATVPSVGFGLLFFGGEEQNAGRDKYDFLLRAARFADE
                     HGFSAIWLPERHFTQMGSLYPSPVVLHAALSQQTKRI"
     gene            complement(455..>2677)
                     /locus_tag="VEQ16_01580"
     CDS             complement(455..>2677)
                     /locus_tag="VEQ16_01580"
                     /inference="COORDINATES: protein motif:HMM:NF020130.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] synthase III
                     C-terminal domain-containing protein"
                     /protein_id="HYP62544.1"
                     /translation="ARAKECGLHLAPELIFQYQTVAELAAVCVPAAGQPNGNGSAGAP
                     ERRSAGAPSALGAPGLPRPALRNMIIESLGIYLPPRVVTTDEVVRNCRQPLNFPLERM
                     TGIASRRMAGDTEFAIDLAAKAIDDCLARSAHGPADIDLLICSNISRYDGPEFRFSFE
                     PTTAARLQRRFGFRHALAFDIANACAGTFTALAIVEAFLKQGLIKRAMVVSGEYITHL
                     TRTAQLEIENFMDPRIACLTLGDSGMALILEQTENDQVGFHELELYTLGKYHALCVAK
                     VTDRPHGGAIMYTDPVTSSAVTIKQAVSHSLGVLGRRGWLPDDVKHLILHQTSTTTLD
                     GAIHEVNRVVGREVCSRANTIYNLAERANTATTTHFVALWDQLQQGKIAAGDRILFGI
                     SGSGQTVGSALYTMDDLPARWSARNAVNGQWSVASEKDVNSHLATGHSPLATCFRLPR
                     RVRIEAIGLAGDVSPDTVPMLRAAGLECLKQSARQPGEIESVLHTGVYRSEFMLEPAL
                     AAVAAGELGMNADDADLGARRTFAFDLANGGAGPLNACLVAGQMIACGKMGAAMILAS
                     EVENNARSWPENLLGIQETASAFILEPTTNEEGFDTFWFQSFPEQFGLETYTRGWNNL
                     PALAIQRADDLEEKYQECLAKAVGEFLGKTGIERDRIGLVLPPLRSPAFVRRLAEVLQ
                     IPLERFVIPQEAMRDAFTSSLAQGLAAARKAGRCAPGTTGLVLAVGAGIQVGCALYYF
                     "
BASE COUNT          513 a          810 c          855 g          499 t
ORIGIN      
        1 ggatgcgctt ggtctgctgg ctgagggccg cgtgcaggac caccggactg gggtacaggc
       61 tgcccatctg cgtgaaatgg cgctcgggca gccagatggc ggaaaaaccg tgctcgtcgg
      121 caaagcgcgc ggcccggagg agaaaatcgt atttgtcccg cccggcgttc tgctcctcgc
      181 cgccgaaaaa cagcaggcca aagcccaccg atgggacggt tgcgcgagcc cgggccgttg
      241 gcgcctggga ctggcgctcg ttcttggcaa cgaaatcgag acagtcctct ttgggatggg
      301 gaccgagggc ttcttgccaa cccgccgggg ccgcacggaa ctccggccac agggcgtagc
      361 gcccctggct gttaaccagc actttgaagc ggctggtttc ttcttggatt tgcgacatgt
      421 cgaaccgcct ctatccaaaa tcgagcgcga acgatcaaaa ataataaagt gcacagccta
      481 cctggatgcc tgcgccaacg gcaagaacca ggccggtggt ccccggagcg cagcgaccgg
      541 cttttcgagc ggctgccaac ccctgcgcca gcgatgacgt aaaggcatcg cgcattgctt
      601 cctggggaat gacaaaacgc tccagcggaa tttgcaaaac ctctgccagc cggcgaacga
      661 aagccggcga gcgtaatggc ggcaatacca ggccgatccg gtcgcgctcg atgcctgtct
      721 taccaaggaa ctcgcccacc gccttcgcca ggcactcttg atatttctct tccaggtcgt
      781 cggcccgctg gatggccagg gcgggcaagt tgttccagcc ccgcgtgtaa gtttccaggc
      841 cgaattgctc agggaaagac tggaaccaga aggtatcaaa gccttcttcg ttggttgtgg
      901 gttccaggat gaaggcggac gcagtttcct ggatgccgag caagttttca ggccagcttc
      961 gggcgttgtt ttcaacttcg ctggcaagga tcatggcggc gcccattttg ccgcaagcga
     1021 tcatctgtcc agccaccagg caggcattga ggggacccgc gccgccgttg gccaggtcaa
     1081 acgcaaaggt gcgacgcgca cccaggtcgg catcgtcggc gttcatgccg agttcaccag
     1141 cggcaacggc ggccagcgcc ggttccagca taaactcgct acggtaaacc cccgtgtgca
     1201 gaaccgactc aatctccccc ggctggcggg ccgattgttt caggcactcc aatcccgcgg
     1261 cccgaagcat cggcacggta tccggtgaaa catcccccgc cagcccgatg gcctcaattc
     1321 gaacccgccg cggcaagcga aaacaagtgg ccagtggcga gtggccagtg gccaaatgtg
     1381 aatttacatc tttttcactg gccactgacc actggccatt gacagcattt ctcgcgctcc
     1441 agcgagcggg caaatcgtcc atggtgtata gtgccgagcc gacggtttgt ccggagccgc
     1501 ttatgccgaa caggatccgg tcgcccgccg cgattttccc ttgctgaagc tggtcccaga
     1561 gagcgacgaa atgagtggtg gttgccgtgt tggcgcgctc cgccaggttg tagatcgtgt
     1621 tggcgcggga acaaacttct cgcccgacca cgcgattgac ctcgtgaatg gcgccgtcca
     1681 gagtggtggt tgaggtctgg tgcaggatga ggtgcttgac atcgtccggc agccagccgc
     1741 gccggccgag cacgcccagc gaatgactga cggcttgctt gatagtgacc gccgagctgg
     1801 tgaccggatc cgtatacatg atggcgccgc cgtgaggccg atccgtgacc ttggccacgc
     1861 acagtgcgtg gtattttccc agagtataca gctccagctc atggaagccg acctggtcat
     1921 tttccgtctg ctccaggatg agagccatgc cggaatcgcc cagggtcagg caggcgatgc
     1981 gcgggtccat gaagttctca atttcaagct gggcggtgcg agtgaggtgg gtgatatatt
     2041 cgccgctgac caccatggcc ctcttgatca gtccttgttt gagaaaagct tcaacaatcg
     2101 ccaaagcggt gaaggtgccg gcacaggcat tggcgatgtc aaacgccagg gcatgcctga
     2161 agccgaagcg ccgctgcagc cgggctgctg tggtcggttc gaagctgaag cggaattccg
     2221 ggccgtcgta acgcgaaatg ttcgagcaga tgagcaggtc aatgtccgca ggtccgtggg
     2281 ccgagcgggc tagacaatcg tcgatggcct tggcggccag gtcgatggcg aattcggtgt
     2341 ctcccgccat gcgccggctg gcgatcccgg tcatgcgctc caggggaaag ttcaaaggct
     2401 gccggcaatt ccgcaccact tcgtcggtgg tgacgacacg cggcggcagg taaataccca
     2461 ggctttcgat gatcatgttt cggagcgccg ggcgcgggag cccgggagcg ccgagcgcgc
     2521 tgggcgctcc ggcgctccgg cgctccggcg ctcccgcgct gccattgcca ttgggttgtc
     2581 cagcggcggg gacgcagacg gctgccagct cggccacggt ctgatactgg aaaatcagct
     2641 cgggagccag gtgcaagccg cattccttgg cgcgggc
//
LOCUS       DASQCV010000105         5092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2507940, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000105 DASQCV010000000
VERSION     DASQCV010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5092
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2507940"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2434)
                     /gene="nuoG"
                     /locus_tag="VEQ16_01585"
     CDS             complement(<1..2434)
                     /gene="nuoG"
                     /locus_tag="VEQ16_01585"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HYP62545.1"
                     /translation="MTSFLIDGKTYSAKPDENLLQACLGAGLDLPYFCWHPALGSVGA
                     CRQCAVKQYANEDDKTGQMVMACMTPLTEGARFSIADPEAAAFRASVIEWLMINHPHD
                     CPVCEEGGECHLQDMTMMTGHAYRRYRFTKRTHRNQDLGPFIKHEMNRCIACYRCTRF
                     YRDYAGGRDLDVFAAHDHVYFGRHEDGTLESEFSGNLVEICPTGVFTDKTFSAHYARK
                     WDMRGAPSVCVHCGLGCNTTANERGGELRRIVNRYNGSVNGYFLCDRGRFGYGFVNAP
                     GRLRTPLARRADGTLAAVSREDAITRLAALLRAGGRIVGIGSPRASLEANFALRTLVG
                     AGNFYPGVSTREERLLRLVADILGSGAVHVPSLREMEQADTALVLGSDVPNAAPRAAL
                     SLRQAVRGAGFALAAKNNIPRWQDAGVRTLAGDVRSPLFIATPAATRLDDVAQETLRA
                     APADLARLGFAVAAIINPAAPAVEDLSADLAARAQTIAAALLAAEHPLIVSGIEAGEE
                     SVIQAAANIATALRGRGKSAALMLNVPECNSLGLTLIANGQTSSEAALAEPATLVIVL
                     ENDLFRRTGQVALGTACLVVLDHSESPTTLRAELVLPAASFAESGGTLVSSEGRAQRF
                     YPPVFAESDVRESWRWLCDAGRAVNSGACEGWITEDDLISALTHALPYFAALPCAAPA
                     QKFRVAGCRVASEPHRFSGRTAMHADIDVREPKPPVSADSPFSTTMEGYYGKMPAAVL
                     PFFWAPGWNSVQSVNKFQAEIGGALEGGDPGVRLLEARADAALPYYTNIPEAFAPRAG
                     LWLAITLPRIFGD"
     gene            complement(2431..3726)
                     /locus_tag="VEQ16_01590"
     CDS             complement(2431..3726)
                     /locus_tag="VEQ16_01590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010667877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase-F iron-sulfur
                     binding region domain-containing protein"
                     /protein_id="HYP62546.1"
                     /translation="MMEKPLTALLQPDGTPLDVTGYERAGGYQALRKALTMTPDAIIN
                     EVKRSKLRGRGGGGFSTGRKWEAVPKGADAPRQRYLVVNADEMEPGSFKDRLLLEQTP
                     HQMIESVIISAFAIQASMAYIFVRTEYVLALDRLARALAEAEAGGYVGSNILGSGYAL
                     TIHLHASGGRYICGESSAMLTALEGRRPIPRSRPPRSAQSGLWGKPSVVNNVETLCCV
                     PHIIAHGADWFLGLSHSADGGTKLYGLSGRVKRPGLWELPLGTTFTEILEEHAGGMQD
                     GYECRAVLPGGASTAFLMEADFDVAMDFTAVQEVGSSLGTGNIIALDNRRCPIGMLRN
                     LEHFFAQESCGWCTPCRDGLPWVERILAAIEAGEGEPEDLETLSRHVSFLGPDCTFCD
                     LAPGAMQPLGSALRHFRAEFEQHIREKRCPWHGEAGSWA"
     gene            complement(3732..4229)
                     /gene="nuoE"
                     /locus_tag="VEQ16_01595"
     CDS             complement(3732..4229)
                     /gene="nuoE"
                     /locus_tag="VEQ16_01595"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HYP62547.1"
                     /translation="MSTVEQNLTDAPLEAELRQQIIAVAQQAEQKQAAGLDALKIVQK
                     RFGFVSDQHLAEVAALLEMTAAELDGVATFYNLIFRRPVGRHVILLCDSVACWVMGEQ
                     AARAHLCKNLGINPGETTEDGRFTLLPIVCLGYCDHAPAMMVDDDQYGDLDATRLDAI
                     LERYG"
     gene            complement(4216..>5092)
                     /locus_tag="VEQ16_01600"
     CDS             complement(4216..>5092)
                     /locus_tag="VEQ16_01600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012226476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoC/D"
                     /protein_id="HYP62548.1"
                     /translation="MLAELFRLASHLVFYGTMSQDVGQLSPVFYMFSDRERVFQIIEA
                     ICGFRMHPAWFRIGGVADDLPQGWDKMIHDYLGYQSKRLDEYHKLVMQNRIFKARTIG
                     VGAYTLEEAFDWGVTGPGLRACGLGWDYRKQRPYSGYDQLDFEIPTCSNGDCYDRVVI
                     HIEEMRQSLRIIRQCLENMPPGPYRSAHRLATPPLRERTMQDIETLITHFLNVSWGPV
                     LPPGEAMVSIEATKGINGYYLTADGDSVSYRTRIRTPSFPHLQMIPLISRGAYVADLI
                     AILGSIDFVMADVDR"
BASE COUNT          955 a         1590 c         1623 g          924 t
ORIGIN      
        1 catcgccaaa tatgcggggc aaggtgatcg caagccacag tcccgcgcgg ggcgcgaaag
       61 cctcgggaat attggtgtaa taaggcaatg ccgcgtccgc gcgcgcctcc agcagccgca
      121 cgccgggatc gccgccttcg agcgcgccgc cgatctcggc ctggaatttg ttaactgatt
      181 gtaccgagtt ccatcccggt gcccagaaga agggcagaac tgcagctggc atcttgccgt
      241 aatagccctc catggtggtg ctgaaggggg agtctgcact gacaggcggt ttcggctctc
      301 gcacatcgat atctgcgtgc atcgccgtgc ggccggagaa acggtgcggc tcgctggcga
      361 cccggcaacc cgcgacacgg aatttttgcg ccggcgccgc gcagggaagt gctgcaaagt
      421 atggcaaggc atgggtcaaa gccgaaatga gatcatcttc cgtgatccag ccttcgcaag
      481 cgccgctgtt gacggcgcgg ccggcatcgc aaagccagcg ccatgattct cttacatcgc
      541 tttcagcaaa gaccggcgga tagaagcgtt gcgctcgccc ttcgctgctc accagcgtcc
      601 cgccagattc agcgaaactc gccgccggca gcacgagttc ggcgcgcagc gtggtcgggc
      661 tttcgctatg gtccagcacc acaaggcagg ccgtgccgag tgccacctgt cctgtgcggc
      721 ggaaaagatc gttttcgagc acgatcacga gcgtggccgg ttcagcaagc gctgcctcgg
      781 agctggtttg cccattcgct atgagtgtca ggccgaggct gttgcattcg ggaacattca
      841 gcatcagcgc ggcagatttt ccgcgcccgc ggagtgcagt ggcgatgttg gcggcggctt
      901 ggatcacgct ttcttcgccc gcctcgatgc cggagacgat gagcgggtgc tcggccgcga
      961 gcagcgccgc cgcaatcgtc tgcgcacgtg cggcgagatc ggcggacaaa tcctcaaccg
     1021 ccggcgctgc gggattgatg atggcggcga ccgcaaagcc aagccgcgcg agatcggcgg
     1081 gggcggcgcg caaggtttcc tgggcgacat cgtcgagcct ggtcgctgca ggtgtcgcga
     1141 taaaaagtgg actccgcaca tcgcccgcga gcgtgcgcac cccggcatcc tgccagcgcg
     1201 gaatattatt cttggcggcc agcgcgaacc cggcgccgcg taccgcctgg cgcagcgaca
     1261 gcgcggcgcg cggcgcggcg ttgggcacat ccgagccgag caccagcgcc gtatccgcct
     1321 gttccatttc acgcagcgag ggaacatgca ctgcgccgga gccaagaata tcggcaacca
     1381 gacgcagcag gcgctcctcg cgcgtgctga cgccgggata gaaattcccg gccccgacca
     1441 atgtgcgcag cgcgaaattg gcttccagcg aggcacgcgg cgagccgatg ccgacgatcc
     1501 ggccacccgc gcgcagcagg gcggctaaac gcgtgatggc gtcttcacgg ctcactgctg
     1561 caagcgttcc atccgcgcgg cgcgcaagcg gcgtgcggag ccggcctggg gcgttgacaa
     1621 agccataacc gaagcggccg cgatcgcata gaaaatagcc gttgaccgac ccgttatagc
     1681 gattgacgat ccgccgcagc tcgccgccgc gctcgtttgc ggtggtgttg cagccaagcc
     1741 cgcaatgcac gcagaccgag ggcgcgccgc gcatatccca tttgcgtgca taatgcgcgg
     1801 agaaggtctt gtcggtgaag acgccggttg ggcagatctc taccagattg ccgctgaatt
     1861 cactctccag cgtgccatct tcatggcggc cgaaataaac atgatcatgc gcggcgaaca
     1921 cgtcgagatc gcgcccgccg gcatagtcgc gatagaagcg cgtgcagcga tagcaggcga
     1981 tgcagcgatt catttcgtgc ttgatgaatg gcccaagatc ctggttgcga tgggtgcgct
     2041 tggtaaagcg gtagcgccgg taggcgtgcc cggtcatcat cgtcatgtcc tgaagatggc
     2101 actcaccgcc ttcctcacag acggggcaat catgcggatg gttgatcatc agccactcga
     2161 tgacgctggc gcggaacgca gccgcctctg ggtcggcgat ggagaagcgc gcgccttcgg
     2221 tgagcggtgt catgcacgcc atcaccatct gcccggtctt gtcatcttcg ttcgcatatt
     2281 gcttgaccgc gcattggcgg cacgccccca ccgagccgag cgccggatgc cagcagaaat
     2341 aagggagatc gagccccgcg ccgaggcagg cctggagcag gttctcgtcc ggcttcgcgc
     2401 tatatgtttt gccgtcgatc aggaatgagg tcatgcccaa ctccccgctt caccatgcca
     2461 gggacagcgt ttttcgcgga tatgctgctc gaactccgcg cgaaaatgcc ggagcgcgct
     2521 gccgagcggc tgcatcgcgc caggcgcgag gtcgcaaaag gtgcagtccg ggccaagaaa
     2581 ggaaacgtgg cgggagagcg tttcaagatc ctcaggctcg ccctcgccag cttcgatcgc
     2641 cgctaaaatg cgctccaccc agggcaggcc gtcgcggcag ggcgtgcacc agccgcagga
     2701 ttcctgggcg aagaaatgct caaggttgcg cagcatgccg atggggcagc gccggttgtc
     2761 gagcgcgatg atattgccgg tgccgagcga gctgcccacc tcctggaccg cggtgaaatc
     2821 catcgcgaca tcgaagtcgg cttccatgag aaaggcggtg gacgcgcccc ctggcagcac
     2881 cgcgcggcat tcatagccgt cctgcatccc gcccgcatgt tcctcaagaa tttcagtgaa
     2941 cgtcgtgcca agtggcagct cccacagccc tgggcgcttc acccgcccgc tcaggccgta
     3001 aagcttggtg ccgccgtctg cgctgtggct gaggccgaga aaccagtcgg cgccatgcgc
     3061 aatgatgtgc ggaacacagc acaatgtctc gacgttattc accacgctcg gcttacccca
     3121 aagcccgctc tgcgccgagc ggggcggccg cgagcgcggg atggggcggc ggccttcgag
     3181 tgccgtgagc atggcgcttg actcaccgca gatgtagcgc ccgccactcg catgcaaatg
     3241 gatggtgagt gcgtagcctg agcccagtat gttactgccg acatagccgc ctgcttcggc
     3301 ctcggcgagc gcgcgggcca gcctgtcgag tgccagcaca tattcggtgc gcacaaagat
     3361 ataggccata ctcgcctgaa tcgcgaaagc gctgatgatc accgactcga tcatctggtg
     3421 cggtgtctgt tcgagcagaa gccggtcctt aaaactgccg ggctccatct catcggcatt
     3481 gacaacgaga tagcgctgcc gcggcgcatc ggcgcctttc ggcaccgcct cccatttgcg
     3541 cccagtcgag aacccgccgc cgccacggcc gcgcaatttc gagcgcttga cctcgtttat
     3601 gatggcgtcc ggtgtcatgg tgagtgcctt gcgcagtgcc tgatagccgc cggcgcgttc
     3661 atagccggtc acgtcgagcg gcgtgccgtc gggctggagc aaggcggtga gcggcttttc
     3721 catcatcgct ttcacccgta tcgctcaagg atggcgtcca accgcgtggc gtcgagatcg
     3781 ccatattggt cgtcatcgac catcattgcc ggcgcgtggt cgcaatagcc gaggcagaca
     3841 atcggcagca gcgtgaagcg gccgtcttcg gtcgtctcgc ccggattgat ccccagattt
     3901 ttacacagat gggcgcgggc ggcctgttct cccatcaccc agcacgccac gctgtcgcac
     3961 agcagaatca cgtggcggcc aaccggacgg cggaaaatca ggttgtagaa cgtggcgacg
     4021 ccatcaagct cggcagctgt catctccagc agcgcggcca cctcggccag atgctgatcg
     4081 gagacaaagc cgaagcgctt ctgcacgatt ttcagcgcgt ctagacccgc ggcctgtttt
     4141 tgttcggcct gctgcgcgac ggcaatgatc tgctggcgca gctccgcttc tagtggcgca
     4201 tctgtgaggt tttgttcaac ggtcgacatc ggccatcacg aaatcgatgc tgccgaggat
     4261 cgcgatcagg tcggcgacat aggcaccgcg gctgatgagc gggatcatct gcagatgagg
     4321 gaatgaaggc gtacggatgc gagtgcggta ggaaacactg tcgccgtcgg cggtgagata
     4381 atagccgttg atccccttgg tcgcctcgat gctgaccatt gcttctcctg gtggcagtac
     4441 tggcccccag ctgacattga gaaaatgggt gatcagggtt tctatgtctt gcatcgtccg
     4501 ctcccgcagc ggcggcgtcg ccagcctgtg cgccgaccgg taaggcccgg gcggcatgtt
     4561 ttcgaggcac tggcgaatga tgcgcaggct ttggcgcatt tcctcgatat ggattacgac
     4621 gcggtcgtag caatccccat tgctgcaggt ggggatttcg aaatcgagct ggtcatatcc
     4681 cgaatagggg cgctgcttgc ggtagtccca gccaaggccg caggcacgca ggccggggcc
     4741 ggtgacgccc cagtcgaatg cctcctccag cgtataggcc ccgaccccga ttgtgcgcgc
     4801 cttgaaaatg cgattctgca tgacgagctt atggtattcg tcgaggcgct tcgactggta
     4861 accgagatag tcatggatca ttttgtccca gccctggggc agatcgtccg ccacgccgcc
     4921 gatgcggaac catgccgggt gcatgcggaa gccgcagatc gcctcgatga tctggaaaac
     4981 ccgctcacgg tctgagaaca tatagaatac cggcgagagc tggccgacat cctgcgacat
     5041 ggtaccgtag aagacgagat ggctcgccag ccggaacaat tcggcgagca tg
//
LOCUS       DASQCV010000106         2802 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2342183, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000106 DASQCV010000000
VERSION     DASQCV010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2802
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2342183"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..853
                     /gene="sucD"
                     /locus_tag="VEQ16_01605"
     CDS             <1..853
                     /gene="sucD"
                     /locus_tag="VEQ16_01605"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019014078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HYP62549.1"
                     /translation="TKVITQGFTGAQGTFHSEQALAYGTKVVGGVTPGKGGQVHLDLP
                     VFNTVGEAVAKTGANASAIYVPPPFAADSILEAIDAGLELIVCITEGIPVLDMVKVKR
                     ALSDSKSRLIGPNCPGVITPDECKIGIMPGHIHKRGSIGIVSRSGTLTYEAVAQTTAA
                     GLGQSSCVGIGGDPVKGTDFIEVLDMFLHDDETQAIIMIGEIGGPSEIDAAEFLAKHK
                     IKKPVVGFIAGVTAPPGRRMGHAGAVISGGKDTAAAKIAAMKEAGVHVSDSPAALGST
                     MVKALQG"
     gene            1066..>2802
                     /locus_tag="VEQ16_01610"
     CDS             1066..>2802
                     /locus_tag="VEQ16_01610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HYP62550.1"
                     /translation="MAGVDILGSAMNGANAQFIAQLYAKWVEEPDSVDPDFAALFAAL
                     DEDDRAVLTEASGASWAPRPWVFETLTTDAVPKQAAKPTMSTAEMRAATLDSIRALMI
                     IRAYRVRGHLEAQLDPLGLKRQSHHEELDPATYGFIEAADFDRPIFLDRVLGFETATM
                     RQIMVELRKSYCGAIGVEFMHIQDPYQKSWIQKRIEGAPWLTSFDNKGKAKILRQLTE
                     ADSFETFCQKRFVGTKRFGLEGGESTIPALHAIIENAANGGVREIAIGMPHRGRLNTL
                     VNIVKKPLVALFSEFGGASAKPEDVQGSGDVKYHLGTSTDLIINGNKLHLSLQPNPSH
                     LEAVDPVVVGKIRARLDMTGDKSRRSAMAIMMHGDAAFAGQGLVYETLAMSQLIGYRT
                     GGSIHLVVNNQIGFTTVPAHAFSGMYCTDVAKAVQAPILHVNGDNPEAVVFAAKMAAD
                     FRNEFATDVVIDLVCYRRHGHNENDEPAFTQPIMYKAIRGLKTTRTLYAERLDKEGSV
                     PAAEAKAILDEYNQTLEDAYEGAKDYKVNKADWLEGHWSGLSHGGSEADFRDEETAAP
                     LAQLREVGAALST"
BASE COUNT          553 a          909 c          828 g          512 t
ORIGIN      
        1 gaccaaggtc atcacgcaag gcttcaccgg cgcgcaaggc accttccatt ccgagcaggc
       61 gctcgcttac ggcaccaaag tggtcggcgg cgtcacgccc ggcaaaggcg gccaggtcca
      121 tctcgacctg cccgtgttca acacggttgg tgaggctgtc gccaagaccg gcgccaatgc
      181 ctccgccatc tatgtcccgc ccccgttcgc ggcggattcc atcctggaag cgattgatgc
      241 cgggctggaa ctgatcgtct gcatcaccga gggcatcccg gtgctggaca tggtgaaggt
      301 gaagcgcgcc ctctctgaca gcaagtcccg cctcatcggc cccaactgcc ccggcgtcat
      361 cacgccggat gagtgcaaga tcggcatcat gccgggtcat atccataagc gcggctccat
      421 cggcatcgtg tcccgttccg ggacgctcac ctatgaggcg gtggcccaga ccacggcagc
      481 cgggcttggc cagtcctcct gcgtgggcat tggcggcgac ccggtgaaag gcaccgattt
      541 catcgaagtg ctggacatgt tcctgcatga cgacgagacc caggccatca tcatgatcgg
      601 cgagatcggc ggcccgtccg agatcgacgc ggccgaattc ctcgccaagc acaagatcaa
      661 gaagccggtt gtcggcttca tcgctggtgt taccgcgccg ccaggccgcc gcatgggcca
      721 tgccggtgct gtcatttccg gcggcaagga caccgccgcc gccaagatag ctgccatgaa
      781 ggaagcgggc gtccatgtct ccgacagccc cgcggccctc ggcagcacca tggtcaaggc
      841 gctgcaaggc taattaaaca aacggaaagg gcacggggtg ttaaacaggt tacacatgca
      901 tgttaaacaa ccctgccctt gcaagttggg taacggctag gctgagcgtg tggcttatat
      961 ggccacgcgt gaggcaggtt ctgttgcgta agcctatgta acatgtcctc ctgcccgccg
     1021 ccttttggga cgggtcttgg tacagcttga aggaacagat tcggtatggc tggtgtagat
     1081 attctcggct ccgccatgaa cggcgccaac gcccagttca tcgcgcagct ttatgctaaa
     1141 tgggtcgagg agccggactc ggtcgatcct gatttcgcgg ccctgttcgc cgccctcgat
     1201 gaggatgaca gagccgtcct caccgaagcc tctggcgcct cctgggcccc ccgcccttgg
     1261 gtgttcgaga ccctcaccac cgacgcggtg cccaagcaag ccgccaaacc tacaatgtcc
     1321 accgccgaga tgcgggccgc gacgctggat tccatccgtg cgctgatgat catccgtgcc
     1381 tatcgcgtgc gtggccatct cgaggcccag ctcgatccgc tcgggctgaa gcgtcagagc
     1441 catcatgagg agcttgaccc cgccacctat ggcttcattg aggcggctga tttcgaccgc
     1501 ccgatcttcc tcgaccgtgt gcttggtttt gaaaccgcga cgatgcggca gattatggtg
     1561 gagctgcgca agagctattg cggcgccatc ggcgtggaat tcatgcatat ccaggatccg
     1621 taccagaaga gctggatcca gaagcgtatt gaaggcgcac cctggctgac ctctttcgac
     1681 aataagggca aagccaaaat cctgcgccag ctgaccgagg ccgacagctt cgagacattc
     1741 tgccagaagc gctttgtcgg cacgaaacgt ttcggccttg aaggcggtga gagcaccatt
     1801 ccggccctgc atgccatcat cgagaatgcc gccaatggcg gcgtgcgcga gatcgccatc
     1861 ggcatgccgc atcgcggccg cctcaacaca ctggtcaata tcgtcaagaa gccgcttgtc
     1921 gccttgttct ccgaatttgg cggcgcctcc gccaagcccg aggatgtgca gggctccggc
     1981 gacgtgaaat accatctcgg cacctccacc gacctcatca tcaacggcaa caagctgcat
     2041 ctctcgctgc agcccaaccc gtcgcatctg gaagcggtgg acccagtggt ggtcggcaag
     2101 atccgcgccc gcctcgatat gaccggcgac aagagccgcc gctccgccat ggccatcatg
     2161 atgcatggcg acgccgcctt cgccggccag ggcctggtgt acgaaaccct ggcgatgagc
     2221 cagctcatcg gctaccgcac tggcggctcc atccatctcg tcgtcaataa ccagatcggc
     2281 tttaccaccg ttccggccca tgccttctcc ggcatgtatt gcaccgacgt ggcgaaggcc
     2341 gtgcaggcgc ccatcctgca tgtgaatggc gacaatccgg aagccgtggt gttcgccgcc
     2401 aagatggccg ccgatttccg caacgaattc gcgacggacg tggtcatcga cctggtctgc
     2461 taccgccgcc atggccataa cgagaatgac gagccggcat tcacccagcc gatcatgtac
     2521 aaggccattc gtgggctgaa gaccacccgc actctctatg cggaacggct cgacaaggaa
     2581 ggctccgtgc ccgccgccga ggccaaggcg attctggatg aatataacca gacgctggaa
     2641 gatgcctatg aaggtgctaa ggactataag gtcaacaagg ccgactggct ggaaggccat
     2701 tggagcggcc tgagccatgg cggcagtgag gctgatttcc gcgacgagga aaccgccgcc
     2761 ccgctcgcgc aattgcggga ggtcggcgcc gccctctcga cc
//
LOCUS       DASQCV010000107         3704 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_352542, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000107 DASQCV010000000
VERSION     DASQCV010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3704
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352542"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..1157)
                     /locus_tag="VEQ16_01615"
     CDS             complement(48..1157)
                     /locus_tag="VEQ16_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016737755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase activity,
                     zinc-dependent [Evidence IEA];
                     GO_function: GO:0051903 - S-(hydroxymethyl)glutathione
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA];
                     GO_process: GO:0009404 - toxin metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase/class
                     III alcohol dehydrogenase"
                     /protein_id="HYP62551.1"
                     /translation="MKTRAAVARAAGQPLSLEIVELEGPKFGEVLVEVKATGICHTDE
                     YTLSGADPEGLFPAILGHEGAGIVVDVGPGVTSLKRGDHVIPLYTPECRQCKTCLSRK
                     SNLCTAIRTTQGQGVMPDGTSRFSCDGETVMHYMGCSTFANFTVLPEIALAKVREDAP
                     FEKICYIGCGVTTGIGAVFNTAKVQPGDNVVVFGLGGIGLNVIQGARIAGADKIIGVD
                     LNNGRKPMAEKFGMTHFVNPSEIGEDLVPYLVNLTNGGADYSFECIGNVKVMRQALEC
                     CHRGWGTSIIIGVAGAGQEISTRPFQLVTGRTWKGTAFGGARGRTDVPRIVDWYMDGK
                     INIDDLITHVLPFEKINEGFELMRRGESIRSVVVY"
     gene            complement(1154..2035)
                     /gene="serB"
                     /locus_tag="VEQ16_01620"
     CDS             complement(1154..2035)
                     /gene="serB"
                     /locus_tag="VEQ16_01620"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HYP62552.1"
                     /translation="MSHIVILSANRQAGLLTQADAARALDFCAGRNPNWLAAAQAVEF
                     TVQAAPDRAALQAALAHKSVDVFITKARGRRKAVLVADMDSTIVTTETLDEIAAFAGI
                     KDQIAEITRRSMNGELDFPTALRERVSMLKGLDLSALEKTWKETQFCPGARELVATMK
                     SFGATTALVSGGFTYFTSRVAAELGFDEQRANTLLDDGTSLTGEVGEPILDKDAKLNA
                     LTELAARRGVKLTATMAVGDGANDLPMLQAAGLGMAYYAKPVVAAQVANRIEHTDLTS
                     LLFAQGYPSSSFKGGAS"
     gene            2104..3042
                     /gene="miaA"
                     /locus_tag="VEQ16_01625"
     CDS             2104..3042
                     /gene="miaA"
                     /locus_tag="VEQ16_01625"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011632184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HYP62553.1"
                     /translation="MKSKTALILAGPTASGKSALALALARRLGGTIINADAMQCYREL
                     RIITARPSPEDEALAPHRLYGVRAAAEPANAAWWRQAALAEMERAELPILCGGTGMYF
                     SSLVNGLADIPDPGEAARAEARRLLAELGPEALHARLDAETAAKLKPGDSQRISRAYE
                     VWLATGRGLAWWQAQPAPRLEGWRLRMILLDPPRPVLREAIAVRFEAMLREGALEEVR
                     DFLALGLDPSLPLMRAHGVPELSAYLRGEASLAEAESRAVLATHQYTKRQMTWFRHQK
                     LVEISAMQIIQSRIPGYAQLSESFVACLANFIKNPG"
     gene            3104..>3704
                     /locus_tag="VEQ16_01630"
     CDS             3104..>3704
                     /locus_tag="VEQ16_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007436891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HYP62554.1"
                     /translation="MDGTIQSAELMNSGAEAILRALKAQGVDTIFGYPGGAVLPIYDA
                     IFQQNEIRHILVRHEQAAVHAAEGYARSTGKVGCVLVTSGPGATNAVTGLVDALMDSI
                     PLVCLTGQVPTHLIGNDAFQEADTTGITRPATKHNYLVKRAEDLARVVHEAFYVARSG
                     RPGPVVIDIPKDVQFLPGPYMGPQEAKPLHTYRPKVEGDK"
BASE COUNT          644 a         1147 c         1239 g          674 t
ORIGIN      
        1 ctgccccgcg cgttgaaacg attattgcac tggtttcggt tctttcttta atacaccacg
       61 acgctgcgga tgctctcgcc ccgccgcatc agctcgaacc cttcattgat tttctcgaag
      121 ggcagcacgt gggtgatgag atcgtcgata ttgatcttgc cgtccatgta ccaatcgacg
      181 atgcgcggca catcggtgcg cccgcgcgcg ccgccgaagg cggtgccttt ccaggtgcgg
      241 cctgtgacga gttggaacgg gcgggtggaa atctcctgcc cggcgccggc cacgccgatg
      301 atgatggagg tgccccagcc gcgatggcag cattccagcg cctggcgcat cacctttaca
      361 ttaccgatac attcgaacga ataatcggcg ccgccattgg tgaggttgac gagatagggg
      421 acgagatcct cgccgatttc gcttggattc acgaaatgcg tcatgccgaa tttttcggcc
      481 atcggcttgc ggccgttatt gaggtcgacg ccgatgatct tgtcggcacc ggcgatgcgg
      541 gcaccctgga tgacgttgag gccgatgccg ccgagcccga acaccaccac attatcgccc
      601 ggctgcactt tggcggtgtt gaacacggcg ccgatgccgg tggtaacgcc gcagccgata
      661 tagcagattt tctcgaaggg cgcgtcctcg cgcactttgg cgagcgcgat ttccggcagc
      721 accgtgaaat tggcgaaggt ggagcagccc atgtaatgca tcactgtttc gccgtcgcag
      781 gagaagcgtg aggtgccgtc gggcatcacg ccctggccct gcgtggtgcg gatggcggtg
      841 cagagattgc tcttgcgcga gaggcaggtt ttgcactggc ggcattcggg cgtgtagagc
      901 gggatgacgt ggtcgcctct ctttagcgac gtgacgccgg ggccaacgtc cacgacgatg
      961 cccgcaccct cgtggccgag aatggcgggg aaaagccctt cggggtcggc gccggagagg
     1021 gtgtactcgt ccgtatggca aatgcctgtg gctttcactt ccaccagcac ctcgccgaat
     1081 ttggggcctt ccagctccac aatttccaga gagagcggtt gccccgccgc ccgtgccacc
     1141 gctgccctcg tcttcatgaa gcgccccctt tgaaggatga tgaaggataa ccttgcgcaa
     1201 ataaaagtga cgtcaagtcc gtatgctcga tgcggttggc aacctgcgcc gccaccacgg
     1261 gcttggcgta ataggccatg ccgagcccgg ccgcctgcag catgggcaga tcgttggcgc
     1321 cgtcgcccac tgccatcgtc gcggtgagtt ttaccccgcg ccgggctgcc agttcggtga
     1381 gcgcgttcag cttcgcgtcc ttgtccaaaa tcggttcgcc cacctcgccg gtgagcgagg
     1441 tgccgtcatc gagcagcgtg ttggcgcgct gttcgtcgaa gccgagttcc gcggcgacgc
     1501 gggaggtgaa ataagtaaag ccgccggaga caagggcggt ggtggcgccg aagcttttca
     1561 tggtcgcgac cagctcgcgc gcgccggggc agaattgcgt ctctttccag gtcttctcca
     1621 gcgccgagag atcgagcccc ttcagcatag aaacgcgctc gcgcagcgcg gtggggaaat
     1681 ccagctcgcc attcatggag cggcgggtga tttcggcgat ctggtccttg atgcctgcga
     1741 aggcggcgat ttcgtcgagg gtctcggtgg tgacgatggt gctgtccatg tccgccacga
     1801 gcaccgcctt gcggcggccg cgggctttgg tgatgaacac gtccacggac ttatgtgcca
     1861 gggcggcctg caacgcggcg cggtccggcg cggcctgcac ggtgaattcc acggcctgcg
     1921 cggccgccag ccagttggga ttgcggccgg cacaaaaatc cagggcgcgg gcggcgtcgg
     1981 cctgggtgag gagaccggct tgccggttgg cactcaaaat gacgatatga gacatgggcg
     2041 cgacggataa ggcagagacg ggtggcaagc aacgcatgcg cggggctggt ggggcggccg
     2101 cgcatgaaaa gtaagaccgc tttaattttg gcggggccga cggcgagcgg gaaatcggcg
     2161 ctggctttgg cgctggcgcg gcgcctcggc ggcaccatca tcaatgccga cgccatgcaa
     2221 tgctatcgcg agctgcgcat catcaccgcc cggccgagcc cggaggacga ggcgctggcc
     2281 ccgcaccggc tctatggcgt gcgcgcggcg gccgagccgg ccaatgccgc ctggtggcgg
     2341 caggcggcgc tcgcggaaat ggagcgggcc gaattgccaa tattatgcgg cggcaccggc
     2401 atgtattttt cgtccctggt caacggcctt gccgatatcc ccgaccccgg cgaggcggcg
     2461 cgggccgagg caagacggtt actggcggaa ctggggccgg aggcgctgca tgcgcggctg
     2521 gacgcggaga cggcggcaaa actgaagccg ggggattccc agcgcatctc ccgcgcctat
     2581 gaggtgtggc ttgccaccgg ccggggcctg gcctggtggc aggcgcagcc cgcgccacgc
     2641 ctggaaggct ggcggctgcg catgatcctg ctcgacccgc cgcgcccggt gctgcgcgag
     2701 gctatcgcgg tacggtttga ggccatgttg cgggagggcg cgctggagga ggtgcgggat
     2761 tttctcgcgt taggtctgga cccgtcctta cccctgatgc gcgcgcatgg tgtcccggaa
     2821 ttgagcgcct atctgcgcgg cgaggcgagc ctggccgagg cggaaagccg cgccgtgctg
     2881 gcgacacatc aatacaccaa gcggcaaatg acctggtttc gccaccagaa attggtggag
     2941 atttctgcca tgcaaataat tcaatcaaga atacctggtt acgcgcaact ttcggaaagt
     3001 tttgtggctt gtttggctaa tttcataaaa aatcctggtt gacctgctgc gccgcagcgc
     3061 gtaaggcctg cccttccaac gcgtattggg caggatggga cctatggacg gcacgataca
     3121 aagcgcagaa ttgatgaatt ccggcgcgga agcgatcctt cgcgcgctga aggcgcaggg
     3181 ggtggacacc atcttcggct atcccggcgg cgcggtactg cccatctatg acgccatttt
     3241 ccagcagaac gagatccgcc acatcctcgt ccggcacgag caggcggcgg tgcatgcggc
     3301 ggagggctat gcccgctcca ccggcaaggt cggctgcgtg ctcgtcacct ccggccccgg
     3361 cgccaccaat gccgtcaccg gcctagttga tgcgctcatg gacagcatcc cgctggtctg
     3421 cctcaccggc caggtgccga cgcaccttat cggcaatgac gccttccagg aggccgacac
     3481 caccggcatc acccgcccgg cgaccaagca caactacctg gtcaagcgcg ccgaggacct
     3541 cgcccgcgtg gtgcacgagg cgttctatgt cgcgcgctcg ggccgccccg gcccggtggt
     3601 gatcgacatc cccaaggacg tgcagttcct gccgggcccg tacatgggac cgcaggaggc
     3661 caagccgctg cacacctacc ggccgaaggt cgaaggcgac aagg
//
LOCUS       DASQCV010000108         1556 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1844867, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000108 DASQCV010000000
VERSION     DASQCV010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1844867"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1347)
                     /locus_tag="VEQ16_01635"
     CDS             complement(<1..1347)
                     /locus_tag="VEQ16_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HYP62555.1"
                     /translation="MKRTDPERHFFGHPVAPGIGIGPVHEAVEPELVVSNEKIAASQV
                     ETELARLEEAVERSRTQLHKLKHRLVALPENSQAELAPLMDMYLHMLSSTRLLRGVRQ
                     HIEVELLCAEAAVHTETEIQAGVIMSQHTMDKAGRLRRAEEVRELGRRVVRNLTRQPF
                     RNFTALPAGSILAAESLRPADAALIKPDRFAGVFTAEGGTEGHTAVMLRALGLPSVLG
                     AEGALAGVAPGTLAIIDGDTGEIILNPSKASLELARKKLAAQTRAKRALTRLAHLPAV
                     TRDGTAVELQANLELPLELAMIAESGAHGIGLLRSEFMFMNRETLPDEETQARIYSTI
                     VEAMEGEPVTIRVLDWGSDKEVEALSRYLPEAPEPNPALGLRGMRLLLRHKALLETQL
                     AAIIRAGAAGPVRILLPMISLAAEVAEARACLRRVWQRLKRRKGITLPATPPPIGIM"
     gene            complement(1334..>1556)
                     /locus_tag="VEQ16_01640"
     CDS             complement(1334..>1556)
                     /locus_tag="VEQ16_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HYP62556.1"
                     /translation="RAAAKLVTLAEQFSASVDVSKDGQSVSARSIMGLMMLGAGIGST
                     VRLSAEGFDAKEALDAIAALIEAGFHETD"
BASE COUNT          254 a          567 c          482 g          253 t
ORIGIN      
        1 catgatgccg attggcggcg gcgtggccgg cagcgtgatg cccttgcgcc gtttcagccg
       61 ctgccacaca cgccgtaggc aggcccgcgc ctccgctact tcggcggcca ggctaatcat
      121 gggcagcagg atgcgcaccg gcccggccgc cccggcgcgg atgatggcgg cgagctgtgt
      181 ctccagcagc gccttgtgcc gcagcaatag ccgcatgccg cgcagcccca gcgccgggtt
      241 gggctcaggc gcctcgggca gatagcgcga cagcgcctcc acctccttgt ccgaacccca
      301 atccagcacc cggatcgtca ccggctcgcc ctccatggcc tccacgatag tgctgtagat
      361 gcgcgcctgc gtctcctcgt ctggcagagt ctcacgattc atgaacatga attccgaacg
      421 cagcagccca atcccatgcg cgcccgattc tgcaatcatc gcgagttcca gcggtaattc
      481 cagattcgcc tgcagctcga ccgcggtgcc gtcgcgcgtg acggcgggca gatgcgcaag
      541 ccgggtcaaa gcgcgcttgg cacgcgtctg cgccgccagt ttcttgcgcg ccagctccaa
      601 gctggcctta ctgggattga ggatgatctc gcccgtatcg ccatcgatga tggcgagcgt
      661 gccgggcgcc acacccgcca gcgccccttc cgcacccagc acggagggca ggccgagcgc
      721 gcgcagcatc accgctgtat gcccttccgt tcccccctcg gcggtgaaca cgccggcaaa
      781 ccggtccggc ttgatcagcg ccgcgtcggc cgggcgcagc gattccgcgg ccaggatgga
      841 acccgcggga agggcggtga aattgcggaa gggctggcgc gtcaggttgc gcaccacgcg
      901 ccgccccagc tcgcgcacct cctcggcccg gcgcagccgc cccgccttgt ccatggtgtg
      961 ctgagacatg atcacgccgg cctggatctc ggtctcggta tgcacggccg cctcggcgca
     1021 gagtagctcc acctctatat gctgccgcac cccgcgcaac agccgcgtcg agctcagcat
     1081 gtgcagatac atatccatca gcggcgccag ctcggcctgt gaattctcag gcagcgccac
     1141 cagcctgtgc ttcagcttgt gcagctgcgt gcgcgagcgt tccacagcct cttccagccg
     1201 ggccagctcg gtctcgacct ggctagcggc aatcttctcg ttggagacga caagctcagg
     1261 ctcgacggcc tcatgcaccg gtccgatgcc gatgccaggt gccacggggt ggccaaaaaa
     1321 atgccgctcg ggatcagtcc gtttcatgga agccggcctc gatgagggcg gcaatggcgt
     1381 ccagcgcctc cttcgcgtcg aacccctcgg ccgagaggcg caccgtgctg ccgatgccag
     1441 cgcccagcat catcaacccc atgatcgagc gcgcggaaac cgactgccca tccttcgaca
     1501 catccacgct ggcggaaaat tgctcggcca aggtcaccag cttggcggcg gcgcgg
//
LOCUS       DASQCV010000109         1586 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1844946, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000109 DASQCV010000000
VERSION     DASQCV010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1844946"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..627
                     /locus_tag="VEQ16_01645"
     CDS             103..627
                     /locus_tag="VEQ16_01645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62557.1"
                     /translation="MLSSQLQTKPGQPQPDRTPPMAEAPTHVALAERRNAMRVPVIKS
                     AKIVTAGDGGQSTYNCLVLDESAAGVLVDLGAMFSLPEEMTLHMTGGASYRARRCWAV
                     GTKAGLSFIGPQMLSAEAVEKLGQLGRMMQSQGLPATMAALRGQHFFESEELRRAAEA
                     AEAAYQRLESVLIG"
     gene            complement(875..>1586)
                     /locus_tag="VEQ16_01650"
     CDS             complement(875..>1586)
                     /locus_tag="VEQ16_01650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62558.1"
                     /translation="RAAAAPHPGALQWALSAQFWRWGPLYLTALSMVFAARGRGLTSN
                     FPLLWLFGALIGAVSGKFFYDHYFLQCLPPLCVLAGCAWARLPPGGAVRDLFLLFLLP
                     LPLQAGWQALRYAGGEDVPTEIAANLNAARAQSLYVFDSQPIIYALTGLTPPTRFVLP
                     SELTGLTLPDVAGVDPPAEVRRILSTSPEYILRREPPPAPGPSTGNPPVYAVLDAALA
                     AHYRLVQSWPGVALYKHQ"
BASE COUNT          279 a          501 c          535 g          271 t
ORIGIN      
        1 agccggactt cattcattga cctgaatcaa gcttcccgtt gaccccttgt taacgagttt
       61 gcgccaccat cggccctgtc ccacccacgc aaggttgtgc ccatgctctc cagtcagctc
      121 cagaccaaac ccggccagcc tcagccggac cggacgccgc ccatggcgga ggcgcccaca
      181 catgtcgccc tggccgagcg ccgcaacgcg atgcgcgtgc cggtcatcaa gagcgcgaaa
      241 atcgtcaccg ccggcgatgg cgggcagagc acctataact gcctggtgct cgatgaatcc
      301 gccgccggcg tgctggtcga tctcggcgcc atgttttccc tgccggagga gatgaccctg
      361 catatgaccg gcggcgccag ctaccgcgcg cggcgctgct gggccgtggg caccaaggcg
      421 ggtctgtcct ttatcggccc gcaaatgctg agcgccgaag ccgtggagaa gctggggcag
      481 ctgggccgga tgatgcaatc gcagggcctg cccgccacca tggcggcgct gcgggggcag
      541 catttcttcg agagcgagga attgcgccgc gccgccgaag ccgccgaggc cgcgtatcag
      601 cgcctggaat ccgtgctcat cggttagaga ctgtttcata agtctactct ggcggccgtc
      661 aaaaggcgat tttctgcgct ccggtgctca cgtactgatg tacgctccgc tccggtgctc
      721 aaaaatcacc acttgacgac tcaccagagc gacttctgaa acagtctctt agtctctccc
      781 tgcctgtcgt ccgggaaaat gttttgtccg cattggtgtg ctgcgggccg gatgtggcat
      841 tttgtgggaa tttgtggctt tggtgtggga gtggctattg gtgcttgtac agcgccacgc
      901 ccggccaact ctgcaccagc cggtaatgtg ctgccagggc cgcgtccagc acggcgtaga
      961 ccggtgggtt gcccgtgctt ggccccggtg ccgggggcgg ttcacgccgc aggatatatt
     1021 cgggtgatgt gctgaggatg cgccgcacct cggccggtgg gtccaccccg gcgacgtccg
     1081 gcaatgtcag tcctgtcagc tcggagggaa ggacgaagcg cgtcggcggc gtcaggccgg
     1141 tgagggcgta gatgatgggc tgggaatcga acacgtagag gctttgcgcc cgcgcagcat
     1201 taaggttggc cgcgatttcg gttggcacgt cctcgccgcc ggcatagcgt agcgcctgcc
     1261 agcctgcctg cagcggcagg ggcaggagga agaggaggaa cagatcccgc accgcaccgc
     1321 ccgggggcag ccgcgcccag gcgcagcccg cgagcacgca gagcggcggg aggcattgca
     1381 ggaaataatg gtcgtagaag aatttgccgg agaccgcgcc gatgagcgcg ccgaacagcc
     1441 agagcagcgg gaaattgctc gtcaaacccc gcccccgtgc ggcgaacacc atggaaagcg
     1501 ctgtgaggta aagcggcccc cagcgccaga actgggcgga cagcgcccat tgcagcgcgc
     1561 cgggatgcgg agctgcggcg gcgcgg
//
LOCUS       DASQCV010000110         2330 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1348104, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000110 DASQCV010000000
VERSION     DASQCV010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1348104"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1004)
                     /locus_tag="VEQ16_01655"
     CDS             complement(<1..1004)
                     /locus_tag="VEQ16_01655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase"
                     /protein_id="HYP62559.1"
                     /translation="MLDDIRGSVDWQALDAAHHLHPFTDHKDLHSRRVRVITDAQGVF
                     LHDADGNKILDGMAGLWCVAAGYGRKELVDAAATQMAKLPYYNTFFKTSNQPAILLAQ
                     KLAQIAPEGINHVFYACSGSEAVDSALRTARVYWQTLGKPQKKIVIGREYGYHGSTTL
                     GASAGGMADMHRQAGDLPNFAHVLPPYWWGKGGQMSPEEFGVYAAREVEKKILELGAD
                     NIAAFIGEPIQGSGGVIIPPETYWPEINRICKQYDILLIADEVITGYGRTGKWFGSDY
                     FGIKPDMITTAKGLTSGYVPLSALLVHDRVADVFVNDFGEYYHGFTYSGHPVACAVAL
                     "
     gene            1276..2283
                     /locus_tag="VEQ16_01660"
     CDS             1276..2283
                     /locus_tag="VEQ16_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HYP62560.1"
                     /translation="MSEQKPDLDKLLESRGQFAQLGAYVTEACFSPQSQAAFALGDGT
                     VRLGGDFTPVQAHDGAVLSLSSHPLGGFCTGGDDGRLMHVTDTASEIAKFGSKWVEHV
                     ASFTGKSACIAAAVGKVVHLFSAKGEKLRELAHSSTVSGLAFDAKGKRLATSHYNGAS
                     LWFTGSSAAPRMLEWKGSHTGIVIHPKDEALVTSMQENSLHGWTLPEGKHMRMSGYPA
                     KTESMGFTKSGRWLATAGAESVVLWPFFGGGPMGKAPTELGMGDGIVRRVACHPDHEV
                     VAAGFDTGLTLLIHIAQGQILPLCGPGRGAITALTWNANGSQLALGTDTGFAAVVDFT
                     G"
BASE COUNT          463 a          777 c          670 g          420 t
ORIGIN      
        1 ttcagcgcca cggcgcaggc aaccggatgg ccggaatagg tgaagccgtg ataatactcg
       61 ccgaaatcat tcacgaacac atccgccacg cggtcatgca ccagcaaagc ggagagcggc
      121 acatagcccg aggtgaggcc cttggcggtg gtgatcatgt ccggcttgat gccgaaataa
      181 tcggaaccga accatttgcc cgtgcgcccg tagccggtga tgacctcatc ggcgatcagc
      241 aggatgtcgt actgcttgca gatgcggttg atctcgggcc agtaggtctc gggcggaatg
      301 atgacgccgc cggaaccctg gatcggctcg ccgatgaagg cggcaatatt gtcagcgccc
      361 agctcaagaa tcttcttctc gacctcgcgc gcggcataca cgccgaactc ttccgggctc
      421 atctgcccgc ctttgcccca ccaataaggc ggcagcacat gcgcgaaatt cggcaaatcg
      481 ccggcctggc ggtgcatgtc cgccatgccg ccggcggaag cgcccagcgt ggtggagccg
      541 tgatagccgt actcgcggcc gatcacgatt ttcttctgag gcttgcccag cgtttgccag
      601 tacacgcgcg cagtgcgcag cgcggaatcc acagcttccg aacccgaaca ggcatagaag
      661 acatggttga tgccctcggg cgcgatctgc gccagcttct gcgccagcaa gatcgcgggc
      721 tggttcgagg tcttgaagaa ggtgttgtag taggggagct tcgccatctg cgtggcggcg
      781 gcgtccacca gctccttgcg gccatagccg gcggcgacac accacaggcc cgccatgccg
      841 tctagaatct tgttgccgtc ggcatcatgc agaaacacgc cctgcgcatc ggtgatcacg
      901 cgcacgcggc ggctgtgcaa atccttatgg tcggtaaatg ggtgcaaatg atgcgctgca
      961 tcaagcgcct gccagtccac agaaccacga atatcatcaa gcatttattt tactccgaat
     1021 ctgaaaccaa tacgcgcgcg ggcgtaggct cgcctgccgc aggggaggtc gcgttcagat
     1081 acggggcggg ctaaagccga tacgtgcaca aagaacgagc agctcttcat gcaaattcag
     1141 cgcagcaatg tgggctgcca aaaccatgcc caagtttcgc atggcgcaag gccgcttaca
     1201 aggcattttt atgaagaatg ttgcagccgc cttggggact tgctccctat agtgctcatg
     1261 cggcacaagc aggccatgtc cgaacaaaag cccgatctcg ataagctcct ggaatcccgt
     1321 ggccaatttg cccagcttgg cgcttatgta acagaagcct gtttctcacc ccaaagccag
     1381 gccgccttcg ccctgggcga tggcaccgtg cggctaggcg gtgacttcac cccggtccaa
     1441 gctcatgacg gtgctgtgct gagcctcagc agccatccgc tcggtggctt ctgcaccggc
     1501 ggtgatgacg gcaggctgat gcatgttaca gatacagcca gcgaaattgc caaattcggt
     1561 tccaaatggg tcgagcatgt cgccagcttt accggcaagt ccgcctgcat tgccgccgcc
     1621 gtgggcaagg tcgtccatct cttctcggcc aagggtgaaa aactgcgaga actcgcccac
     1681 agctccaccg tctccggcct cgccttcgat gccaagggca aacgcctcgc cacttcgcat
     1741 tataacggcg cctcgctctg gttcaccggc tcttccgcag cgccgcgcat gctggaatgg
     1801 aaaggcagcc acaccggcat cgtcatccac cccaaggacg aagcgctcgt cacctccatg
     1861 caggaaaatt cactccatgg ctggaccctt cccgagggca agcacatgcg catgtccggc
     1921 tacccggcca aaaccgagtc catgggcttc accaaatccg gccgctggct cgccaccgcc
     1981 ggcgccgaaa gcgtcgtgct ctggcccttc ttcggcggcg gccccatggg caaggcaccc
     2041 accgaacttg gcatgggcga cggcatcgtc cgccgtgtcg cctgccaccc ggaccacgaa
     2101 gtcgtcgccg ccggcttcga caccggcctg accctcctta tccatatcgc ccaaggccaa
     2161 atcctccccc tctgcggccc cggccgcggc gccatcaccg ccctcacctg gaacgccaac
     2221 ggcagccaac tcgccctcgg caccgacacc ggcttcgccg ccgtggtgga tttcacgggc
     2281 tgaaggccag ttcggggcac tgtcccaggg gggctgcgcg cccccctgga
//
LOCUS       DASQCV010000111         1534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3006617, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000111 DASQCV010000000
VERSION     DASQCV010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3006617"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            179..1252
                     /locus_tag="VEQ16_01665"
     CDS             179..1252
                     /locus_tag="VEQ16_01665"
                     /inference="COORDINATES: protein motif:HMM:NF033594.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HYP62561.1"
                     /translation="MHNIERQVWREARAMTRREVITKAIAKQLTWIQAAAILGVTPRH
                     LRRIRWGVEQWGLEAVMDRRGGRPRRKKIKAGTIELLCRLKRDVYPDFSLQHFYEYVT
                     EKHGVKVSYNWLRLMLQEAGVVERQPARGQYRRRQRERRPMVGMLVHLDASTHEWVAG
                     LPRQDLVVALDDADGRILYACFLLQEGTASTFAALESVLRHYGRCVELYTDRGSHFCH
                     SARPGEVADEQHGQVSQALRALGIHQIPSRSPQARGRSERAFGTIQGRLPQELRHQGI
                     SDYEDANRYLAQHFIADFNRRFTVKPAQPESAFIKLASIELELVLSSKHERVVRNDNT
                     VTFKYLILQLPRLASGSISCAAR"
BASE COUNT          307 a          469 c          481 g          277 t
ORIGIN      
        1 atgtgccagc caactggtcg aaaaaccgca gccaccgagg ccacacgacg tcttcgccga
       61 aaactaccag agaatggcga aaatcggaaa gccgctgccg acctttgtgt cataaacatt
      121 ggagatgtcc gggtcataaa catttaaaga tgtccgctgg gttggctaga gccgctcgat
      181 gcacaatatc gagcggcagg tgtggcggga ggcgcgagcc atgacgcggc gggaagtgat
      241 caccaaggcg attgccaagc agctgacctg gatccaggcg gcggcaattt tgggggttac
      301 gccgcgtcac ctgcgccgga ttcgctgggg agttgagcag tggggactcg aggcggtgat
      361 ggaccgccgg ggcgggcggc cacggcgcaa aaagatcaag gcgggcacca tcgagctgct
      421 gtgccggctc aagcgcgatg tctatccgga tttctcgctc cagcattttt acgagtacgt
      481 caccgagaaa catggcgtga aggtttccta caattggctg cggctgatgc tgcaggaagc
      541 cggggtggtg gagcgacaac ctgcccgtgg ccagtaccgg cggcggcagc gcgagcgccg
      601 accgatggtg ggcatgctgg tgcatctgga tgcctcgacc catgagtggg tagccggctt
      661 gccgaggcag gacctggtgg tggcactaga tgacgccgat ggccgcatct tgtacgcgtg
      721 cttcttgctc caggaaggca ccgcctcgac tttcgctgcg ctcgagtcgg tgctgcgcca
      781 ctatggccgt tgcgtcgagc tttatactga ccgcggcagt catttctgcc acagcgcgcg
      841 acccggcgag gtggccgacg agcagcacgg ccaagtcagc caggcattgc gcgcgctcgg
      901 catccatcag atcccatcgc gctcacccca agcccgtggc cgcagtgagc gtgccttcgg
      961 caccattcag ggccgcctgc cgcaagagct caggcaccag ggtattagcg attatgagga
     1021 tgccaaccgc tatctggcgc agcactttat cgccgacttc aatcgccgct tcacggtcaa
     1081 gcctgcgcag ccggaaagcg ccttcatcaa gctcgccagc atcgagctgg agctggtgct
     1141 gtcgagcaag catgaacggg tggtgcgcaa cgacaacacc gtcactttca aatacctgat
     1201 tctccagctc cctcgactcg ccagcggctc catttcgtgc gctgcccggt gacggtccat
     1261 caattctcca acgggactct gggtatcagc tatcagggcc gtctgctggc tcgctacgac
     1321 ggcgcaggca gcccattgca gcccagcccc actaaggagc gcgccgccac tgcgcaacgc
     1381 ttggccagca cagctgtccg gcgcgttgca aggcactggt cgacgcaatc tcagaatcca
     1441 catttttccg cccgcactcc aagggcgaga gactgtcgat aaaacgaccc ttggctagag
     1501 gctaatgggc tcagttggcc gggaactgga ggca
//
LOCUS       DASQCV010000112         1696 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1016131, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000112 DASQCV010000000
VERSION     DASQCV010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1016131"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1165
                     /locus_tag="VEQ16_01670"
     CDS             <1..1165
                     /locus_tag="VEQ16_01670"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP62562.1"
                     /translation="VFTVLVPMYREAEVLPILVSSIRRLDYPRAKLDVKLVLESGDNE
                     TIDAARALGAEDLFEIIRVPDSQPKTKPKACNYALHFARGDYTVIFDAEDIPDPDQLK
                     KVVALFRASPKNVACVQARLNYFNRDDNFLTRMFTLEYSHWFDYLLPGLHRLNIPIPL
                     GGTSNHFRTGVLRELGAWDPYNVTEDADLGVRLTQAGYRVAVVNSTTFEEANGVLKSW
                     INQRSRWIKGYMQTWLVHMRHPVRLYRRLGFVGFTGFQMFIGFPPFTALINPVLWLLF
                     FTALLIGPQQVALLFPPIVLIMALFDLLISNAMYVYFNLVAASKREWFNLVPWGLLAP
                     AYWVLHSVAAYKALIQLISNPHYWEKTQHGTSASSREKVEALMRGADLNAEEA"
     gene            1162..>1696
                     /locus_tag="VEQ16_01675"
     CDS             1162..>1696
                     /locus_tag="VEQ16_01675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62563.1"
                     /translation="MSAALRTKPVRSARRRALISRGWRAGLAVGLSSAVLFTLVGNRL
                     IEHGYAVPEIVQLWNAANSYTQLGGQWSQQLFIILVQLVPGSSVHSLIVVTIIGAAFV
                     QGFLAHDLVKRGWLPGLVAFCQGLTALHPVMLFLATNGSPMLLYAILASFVIFALDRL
                     EAIGDTQSLIVMGLALAL"
BASE COUNT          280 a          549 c          506 g          361 t
ORIGIN      
        1 ggtcttcact gtgctcgtgc cgatgtaccg cgaggcggag gtgctgccga tccttgtctc
       61 ctcgatccgc cggctcgatt atccacgcgc caagctggat gtgaagctgg tgctggaatc
      121 cggcgacaac gaaaccatcg atgccgcgcg cgctttgggc gcggaggatt tgttcgaaat
      181 catccgcgtg cccgacagcc agcccaagac caagccgaaa gcctgcaatt acgcgctgca
      241 tttcgcccgc ggcgattata cggtgatatt cgatgccgag gacattccgg accccgacca
      301 gctgaagaag gtggtggccc tgttccgcgc ctcgcccaag aatgtcgcct gcgtgcaggc
      361 gcggctgaat tatttcaacc gcgacgataa tttcctcacg cggatgttca cgctcgaata
      421 tagccactgg ttcgattatt tgctgccggg tttgcaccgg ctcaacatcc ccatcccgct
      481 cggcggcacc tcgaatcatt tccgtaccgg cgtgctgcgc gagctcggcg cgtgggaccc
      541 gtataatgtc accgaggatg ccgatctcgg cgtgcgctta acacaggcgg gctatcgcgt
      601 ggcggtggtc aattccacca ccttcgagga agccaatggc gtgctgaaaa gctggatcaa
      661 ccagcgcagc cgctggatca aaggctatat gcagacctgg ctcgtgcata tgcgccaccc
      721 cgtgcggctc taccggcggc tcggctttgt cggcttcacc ggcttccaga tgttcatcgg
      781 ctttccgcct ttcaccgcac tcatcaaccc cgtgctgtgg ctgctgttct tcaccgcgct
      841 gctcattggg ccgcagcagg tggcgcttct gtttcccccc atcgtgctga tcatggcgct
      901 gttcgacctg ctgatcagca atgcgatgta tgtgtatttc aatcttgtcg cggcttcgaa
      961 acgggaatgg ttcaatttgg tgccctgggg gttgctggcg ccggcctatt gggtgctaca
     1021 ttcggttgcg gcctacaagg cgctcatcca gctcatctcc aacccgcatt actgggagaa
     1081 gacgcagcac ggcacctcgg ccagcagccg cgagaaggtg gaagccctca tgcgcggcgc
     1141 cgatctgaac gcggaggagg catgagcgcg gcgttacgca ctaaacccgt tcgcagcgca
     1201 aggcgccggg cgctcatcag ccgcggctgg cgcgccggcc tcgccgtcgg cctctcatcg
     1261 gctgtgctgt tcaccctggt gggcaacagg ctcatcgagc atggttatgc ggtgccggaa
     1321 atcgtccagc tctggaatgc cgccaacagc tacacgcagc tcggcgggca atggagccag
     1381 cagctcttca tcatcctggt ccagctggtg cccggcagct cggtgcacag cctcattgtg
     1441 gtcaccatca tcggcgccgc cttcgtgcag ggcttcctgg cgcatgacct cgtcaagcgc
     1501 ggctggctgc ctggcctggt cgccttttgc caggggctca ccgcgctgca tccggtcatg
     1561 ctgttcctgg ccaccaacgg ctcgccgatg ctgctctacg ccatactcgc cagcttcgtg
     1621 attttcgcgc tcgaccggct ggaggcgatc ggtgacacgc agtcgctcat cgtcatgggg
     1681 ctggcgctcg ctttgc
//
LOCUS       DASQCV010000113         1940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2343332, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000113 DASQCV010000000
VERSION     DASQCV010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1940
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2343332"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..186)
                     /locus_tag="VEQ16_01680"
     CDS             complement(<1..186)
                     /locus_tag="VEQ16_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62564.1"
                     /translation="MLKLPPYSRRRLLGAGAVSLIGGPAIAQSALGGAPAGQPGAGTG
                     SNAPIQVSGAQNAPIPIA"
     gene            complement(310..606)
                     /locus_tag="VEQ16_01685"
     CDS             complement(310..606)
                     /locus_tag="VEQ16_01685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62565.1"
                     /translation="MSALQVKAITAHVQPCWNMDKTGLPGHFAVLLSAVTDASGTVRE
                     VEVSPDNTGDMNNPFYFALTQHAIDAMMNAQCATLPLPQNMLGQNQRFTFLFEP"
     gene            complement(726..1676)
                     /locus_tag="VEQ16_01690"
     CDS             complement(726..1676)
                     /locus_tag="VEQ16_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62566.1"
                     /translation="MDRDLRRSAYISSFIHLALIVAAIVTLPLQPLPTSADLDVDVDL
                     IGPTVPQRSTVKGPGAASAVGELHHSETMSEKAPKPQPVVAPPPPPPPPPPTPNQPQT
                     KVTPSSAPPPPPPKPSEMVSPVPPPPPQKQQKQTSTAQQKEKPQEVKKPPAPAKIPVH
                     QQHEVKTPELSQSVMNTLMNLKAQELKKQQVPTSTYNPDQNTAPTAGGSPNSLANSGL
                     TGPDRAAIGSHVRPCWNVDSEAEGLSGFSVLLQVTTDATGTVRVANVDPKNTGDMSNP
                     LYFAFTQRAIAAVLNAQCATLPLPQNMLGQNQTFSFQFAP"
     gene            complement(1695..>1940)
                     /locus_tag="VEQ16_01695"
     CDS             complement(1695..>1940)
                     /locus_tag="VEQ16_01695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HYP62567.1"
                     /translation="SDMKPITISVKPDGTVFLQNTQIELPNLVATLQQASQNNPDQRI
                     FVRGDKDVPYGTMVQVMATITQGGFTKVSLLAEPGGQ"
BASE COUNT          351 a          586 c          599 g          404 t
ORIGIN      
        1 ggcaatggga ataggcgcat tctgcgcacc gctcacctgg atgggcgcgt tggaacccgt
       61 accggcaccg ggctgccccg ccggcgcgcc accaagagcg ctttgcgcga tggcgggccc
      121 gccaatgagc gatacggcac cggcgccaag cagacggcgg cgggaatagg gcggcagttt
      181 caacatatta gctccctgtt acggcgagaa tgaaacgata aggcgtggat tttgccccac
      241 atattggagg cagcgaagag cttgcacatt gaaaattcgt cactgttgca ctggtcatgg
      301 cttcccagct cacggctcga atagaaacgt aaatctctgg ttctgcccca gcatgttctg
      361 cggcagcggc agggtggcgc attgcgcgtt catcatcgcg tcgatggcat gctgtgtaag
      421 ggcaaaatag aatgggttgt tcatatcgcc cgtattgtcc ggcgacactt ccacctcacg
      481 caccgtaccg ctggcatcag ttactgcgct cagcaacact gcaaagtgcc caggcaatcc
      541 agtcttatcc atattccaac acggctgcac gtgtgcggta atggctttca cttgcagtgc
      601 ggacaactga gcatccttat acgtcctctg cactccttgt ggttgtccgg cctgcgcaca
      661 gcccgccaaa acataaaacc acacaaaccc acaaattctc acaaaatgcc acatccaccc
      721 tctgctcacg gtgcgaactg gaagctgaat gtctggttct gccccagcat gttctgtggc
      781 agtggcaaag tggcgcattg cgcgttcaac accgcggcga tggcgcgctg ggtgaaggcg
      841 aaatagagcg ggttgctcat atcgcccgta ttcttgggat ccacgttcgc cacgcgcacc
      901 gtgccggtgg catcggtcgt cacctgcagc agcaccgaga agccgctcaa cccttccgcc
      961 tcggaatcca cattccagca gggccgcaca tggctgccga tggcagcgcg gtccggcccg
     1021 gtgaggccag aattggccag cgagttgggc gaaccgccgg ccgtgggcgc ggtgttctgg
     1081 tcgggattat aggtcgaggt cggcacctgc tgcttcttca gctcctgcgc cttcaaattc
     1141 atcagcgtat tcatcaccga ctggctcagc tccggcgtct tcacctcatg ctgctgatgc
     1201 acggggatct tcgccggcgc gggcggtttt ttcacctcct gcggcttttc cttctgctgg
     1261 gctgtgctgg tctgtttttg ctgtttctgc ggcggcgggg gcggcacggg gctcaccatc
     1321 tcgctcggct tgggcggcgg cgggggcggc gccgaagacg gcgtcacctt cgtctgcggt
     1381 tggttgggtg tgggcggcgg cgggggtggc ggcgggggcg gcgccacgac gggctgaggc
     1441 ttcggcgcct tctccgacat ggtctcgctg tgatgcagct cccccacggc tgaagccgcg
     1501 cccggccctt tcacggtcga gcgctgcggc acggtcgggc cgatcaaatc gacatccaca
     1561 tccaaatccg ccgaggtggg cagcggctgc agcggcagcg tcacgatcgc cgcaacaatg
     1621 agggcgaggt gaatgaagct cgatatatag gcgctgcggc gtagatcgcg gtccaagagt
     1681 cgacctcctt gctcctattg accgccgggc tctgcgagca gggacacctt ggtgaagcca
     1741 ccttgcgtga tcgtcgccat cacctggacc atggtgccat aaggcacatc cttgtcgcca
     1801 cgaacgaaaa ttcgctggtc gggattattc tgcgaggcct gctgtaatgt ggccacgaga
     1861 ttgggcagtt caatctgcgt gttctgcagg aacacggtgc catctggttt caccgagatg
     1921 gtgatgggct tcatatcgct
//
LOCUS       DASQCV010000114         2403 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3172528, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000114 DASQCV010000000
VERSION     DASQCV010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3172528"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..844)
                     /gene="murF"
                     /locus_tag="VEQ16_01700"
     CDS             complement(<1..844)
                     /gene="murF"
                     /locus_tag="VEQ16_01700"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0047480 -
                     UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HYP62568.1"
                     /translation="MSILWHGAELASALGVAQGWDISGISIDTRTLQPGDLFVALQGE
                     RDGHDFCSAAFSKGAAAVLVSRPVEGHAILVTDTLQALGRLGAAARARSAAKIVAVTG
                     SVGKTTTKEMLRRMLSGFGPVHAAEASFNNHIGVPLTLARMKRDAAFGVFEIGMNHPG
                     EIAPLAALVRPDVAIVTSVDRAHLGLMGSEEAIALEKASIFASLAPGGTAVMPEETAF
                     LAVLKAAVPEGQHVSLFGGVNIQRRRSWADGSEVTALIVGQEVSLSLATPGLHMAKNA
                     LAVLS"
     gene            complement(841..2223)
                     /locus_tag="VEQ16_01705"
     CDS             complement(841..2223)
                     /locus_tag="VEQ16_01705"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HYP62569.1"
                     /translation="MVSPEMLGITGITADSRAVQPGFLFAALPGVKADGRVYIAEAVA
                     KGALAVLAPEGTQWPPGVPPRRLILSPEPRARLAELAVEWAGKMPERLVAVTGTNGKT
                     STVDFLRQIFAFAGRKAASIGTLGVVAPGRPVTDSLTTPDPVTLAQTLAGLAREGVSD
                     VAMEASSHGLAQHRLDGLRFSAAGFTNLTRDHLDYHGSMEAYAEAKLQLFIRLMQRGG
                     AMRVMADMPPSLLDRLRAIANVQGLDFAPVAVDRVEPRPDGQLVVSGARQMELHLPGR
                     FQADNALLAASLAEACGVADAFAYLPLLHGVRGRLERALVLPNGAAAYVDYAHTPDAI
                     ARVLSALRPHATGRLHIVFGAGGDRDAGKRPLMGEAAAQGADVCIVTDDNPRSENPVL
                     IRRAILEACPGAIEIGDRRAAIAAALSGLVPGDVLVVAGKGHEQGQIVGAEIIPFDDV
                     SVIRELGGAA"
     gene            complement(2210..>2403)
                     /locus_tag="VEQ16_01710"
     CDS             complement(2210..>2403)
                     /locus_tag="VEQ16_01710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62570.1"
                     /translation="FAYELMGAAPPAALAGPAASSAGRPPAEPAAVHSRRRHDGAMAP
                     VSLMLGSHVTQRETGDGVS"
BASE COUNT          454 a          943 c          670 g          336 t
ORIGIN      
        1 cgctcaacac ggccagggcg tttttcgcca tatgcagtcc cggagtggcg aggctgaggc
       61 tcacttcctg gcccacgatg agcgccgtaa cctccgagcc gtcagcccag ctgcggcggc
      121 gctgaatatt cacaccgccg aacaaggaaa catgctgtcc ttccggcacg gccgccttca
      181 gcacagccag aaacgccgtc tcctccggca ttaccgccgt cccgcccggc gcaagtgacg
      241 caaagatgct ggctttttcc agcgcaatcg cctcttccga gcccatcaac ccgagatgcg
      301 cccgatccac gctggtcaca atcgccacat ccggccgcac cagagccgcc agcggcgcaa
      361 tctcgccagg atggttcatg ccaatctcga acacgccgaa cgcggcatcg cgcttcatgc
      421 gggccagcgt cagcggcaca ccaatatggt tgttgaaact cgcctccgcc gcatgcacgg
      481 gaccaaatcc cgacagcatc cgccgcagca tctccttggt cgtcgtcttg cccacactcc
      541 cggtcaccgc gacgattttt gccgccgaac gcgcccgcgc cgccgcaccc aaccgcccca
      601 aagcctgcag cgtatccgtc accagaatcg cgtgcccctc caccggccgc gataccagca
      661 cagccgccgc ccccttggaa aaagcggcgg agcaaaaatc atggccgtcg cgctcgccct
      721 gcagcgccac gaacaaatca cccggctgca gcgtgcgcgt atcgatggag atgccggaaa
      781 tatcccagcc ctgagccacg cccagcgccg aagccaattc cgcgccatgc cacaaaatac
      841 tcatgcggca cctcccaact cgcggatcac ggacacatcg tcaaacggaa tgatctccgc
      901 ccccacgatc tgcccctgct catgcccctt gcctgccaca acaagcacat cgcccggcac
      961 cagcccggac aacgccgccg caatcgcggc gcggcggtcg ccaatctcga tcgcgccggg
     1021 gcaggcttcg agaatcgccc ggcgaatcag caccgggttt tcgctgcgcg gattatcgtc
     1081 ggtcacgatg cacacatccg cgccctgcgc cgccgcctcg cccatcagcg ggcgcttgcc
     1141 ggcatcacgg tcaccgccgg ctccaaatac gatatgcagc cgcccggtgg catgcggacg
     1201 cagcgcggac agcacgcgcg cgatcgcatc cggcgtatgc gcataatcga cataggccgc
     1261 cgcgccattg ggcagcacca aagcccgctc cagccgcccg cgcacgccat gcagcagcgg
     1321 caaataggca aaagcatcgg ccacgccaca ggcttcggcc agcgaagcgg ccagcagcgc
     1381 attatccgcc tggaaccgcc ccggcagatg cagctccatc tggcgcgcgc cgctcaccac
     1441 cagctgcccg tccgggcgcg gttcaacccg gtccacggca acaggcgcaa aatcgagccc
     1501 ctgcacattc gcgatggcgc gcagacggtc cagcaaggat ggtggcatat ccgccatcac
     1561 ccgcatcgca ccgcctcgct gcatcagccg gataaaaagc tgcagcttgg cctcggcata
     1621 ggcctccatg ctgccgtgat aatcgagatg atcgcgcgtg agattcgtga atcccgccgc
     1681 ggaaaaacgc agcccatcca gcctgtgctg cgcgagaccg tggctcgacg cctccatcgc
     1741 cacgtcgctc accccctcgc gcgccagccc ggccagggtc tgcgccaagg tcaccgggtc
     1801 cggcgtggtg aggctgtccg tcaccggccg ccccggcgcc acaacgccga gcgtgccaat
     1861 ggaggcagcc ttgcgcccgg caaatgcaaa aatctggcgc aggaaatcca ccgtgctggt
     1921 cttgccgttg gtaccggtca ccgccaccag ccgctccggc atcttgcccg cccattccac
     1981 cgccagctcg gctaggcgcg cacgcggctc cggcgagaga attagccgcc gcggcggcac
     2041 gcccggcggc cattgcgtgc cctccggcgc cagcaccgcc agcgcccctt tcgccacggc
     2101 ctcggcgata tagacgcgcc catccgcctt cacccccggc agggcggcaa acaaaaagcc
     2161 cggttgtacc gcgcggctat ccgccgttat acctgtaatc cccagcatct caggagacac
     2221 catcgcccgt ctcccgttgc gtcacatggc tgcccagcat gagcgagaca ggtgccatcg
     2281 ccccatcatg ccggcgccgc gaatgcaccg ccgccggctc ggccggcggc ctgcctgcgg
     2341 acgacgcggc aggccccgcc agtgccgcag gcggcgccgc gcccatcagc tcataggcaa
     2401 acg
//
LOCUS       DASQCV010000115         1860 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2840962, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000115 DASQCV010000000
VERSION     DASQCV010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2840962"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1860
                     /gene="glgP"
                     /locus_tag="VEQ16_01715"
     CDS             <1..>1860
                     /gene="glgP"
                     /locus_tag="VEQ16_01715"
                     /inference="COORDINATES: protein motif:HMM:TIGR02094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HYP62571.1"
                     /translation="GDHLKAASDLGIPLVGVGLMYREGYFRQYLTVDGWQQERYPEND
                     FFNLPLIPETKSDGTPLLISVPFPGREVWARVWRIQVGRVPLYLLDTNISKNSAEDRQ
                     ITSRLYGGDHDMRIRQEMILGIGGIRALRAVGKPPTVCHMNEGHSAFCGLERIRIMME
                     ETKLDFAAAREAVMAGACFTTHTPVPAGNDMFAPQLMEHYFAGYLSQLKIDMQEFLGL
                     GRQNPRDGNEPFCMTVLALRLSNISNGVSKLHGSVSRKMWKAIWPDLADAEIPITSIT
                     NGVHTRSWLAPEMWQLYDRYLGIQWEEKPTDYSIWKRIDNIPNAELWRTHERRRERLV
                     AFARTRLREQLKRRGAPPAEVARADEVLDPEALTLSFARRFATYKRGTLLFRNLDRLA
                     AIINNKERPVQILFAGKAHPRDHGGKELIAEITHVARRPEFRRRIVFIEDYDINVARY
                     LVQGVDVWLNNPRRPLEASGTSGMKACCNGGINMSILDGWWCEGYSGDNGWAIGAGEE
                     YTDLTYQDDVESRAIYDLLEQEIVPLFYNRSSDGLPRGWVSAMKRSISTICPVFNTNR
                     MVQEYMERCYAPAHWRFGALAADHLKKAASLAQWRRNLTRGWPQVRVEAVDGG"
BASE COUNT          365 a          612 c          551 g          332 t
ORIGIN      
        1 cggcgatcat ttgaaagccg cctccgacct gggcattcct ctggtcggcg tcgggctcat
       61 gtatcgcgaa ggttacttcc gccaatatct taccgtggac ggctggcaac aggaacgcta
      121 tccggagaac gattttttca acctgcccct cattcccgaa accaagtcgg acggcacgcc
      181 gttgctcatc agcgttccct ttccggggcg ggaagtgtgg gcgcgggtct ggcgcatcca
      241 ggtcggccgg gttcccttgt acctcctcga caccaacata tccaagaaca gtgccgagga
      301 tcgccagatc accagcagac tctacggcgg cgaccacgac atgcgcatcc gccaggaaat
      361 gatcctgggc atcggcggca ttcgcgccct ccgcgccgtg ggcaagccgc cgacggtctg
      421 ccacatgaac gaaggtcatt ccgcattttg cggcctggaa cgcattcgca ttatgatgga
      481 ggagaccaag ctggatttcg cggcggcccg cgaggcggtc atggccggcg cctgtttcac
      541 cacccacacc cccgtgccgg ccggcaacga catgttcgcc cctcagctca tggaacatta
      601 ttttgccggt tacctctcgc aattgaaaat cgacatgcag gagtttctcg gcctgggccg
      661 gcagaatccc agggacggca acgaaccttt ctgcatgact gtcctggcct tgaggttatc
      721 caacatcagc aacggcgtca gcaagttgca tggttccgtg tcgcggaaaa tgtggaaggc
      781 catctggccc gacctggccg atgccgagat tcccatcacc tccatcacca atggagtgca
      841 cacccgcagc tggctggccc cggaaatgtg gcagctctac gatcgttacc tgggcatcca
      901 gtgggaggaa aaacccacgg attacagtat ctggaaacgg atcgataaca ttcccaatgc
      961 cgaattgtgg cggacgcacg agcgccggcg ggaacggctg gtagcctttg cccgcaccag
     1021 gctgcgcgag caactcaagc gccggggagc acctcccgcc gaagtcgctc gcgccgacga
     1081 agtcctcgac cccgaggcgt tgaccctcag cttcgcccgc cgcttcgcta cttacaagcg
     1141 cggcacactc ttgttccgca atctggatcg gctcgcagcc atcatcaaca acaaggagcg
     1201 gcccgtgcag attctctttg ccggcaaggc ccacccgcgc gaccacggcg gcaaggagtt
     1261 gattgccgag atcacgcacg tcgcccgccg gccggaattt cgccgccgca tcgtctttat
     1321 cgaggactac gacatcaacg tggcacgcta cctggttcag ggcgtggatg tctggctcaa
     1381 caatccgcgc cggcccctgg aggcctccgg caccagcggc atgaaagcgt gctgcaacgg
     1441 cggcatcaac atgtccatcc tcgatggctg gtggtgcgag ggttattccg gcgacaacgg
     1501 ctgggccatc ggcgccggcg aggaatacac cgacctgacc taccaggacg atgtcgagag
     1561 ccgggcgatt tacgacctgc tggagcagga gatcgtgccg ctgttttaca accgctccag
     1621 cgacggcctg ccgcgcggct gggtcagtgc catgaagcgg tcgatcagca ccatctgccc
     1681 ggtcttcaac acgaaccgca tggtccagga gtacatggag cgctgctacg ccccggccca
     1741 ctggcgcttc ggcgcactgg ccgccgatca cctcaagaag gctgcatcac tggcgcagtg
     1801 gcggcgcaat ctcaccaggg gctggccgca agtgcgcgtc gaggccgtcg acggcggcag
//
LOCUS       DASQCV010000116         3955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_187715, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000116 DASQCV010000000
VERSION     DASQCV010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3955
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187715"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..264
                     /locus_tag="VEQ16_01720"
     CDS             <1..264
                     /locus_tag="VEQ16_01720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62572.1"
                     /translation="GQRLDILFGDVMADDIGTAQKLLAFAGLEPNAESVADMRAYMDS
                     HPRGKDGRVVYDLAGDFNLDIAALRQRFSFYTDRFNVRQEVKS"
     gene            497..736
                     /locus_tag="VEQ16_01725"
     CDS             497..736
                     /locus_tag="VEQ16_01725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62573.1"
                     /translation="MQIGDVIIGSTGRPAPGGRVHIGEGELPLKRMMQDVLDAGYKGL
                     FDLEVVPANFAAGCDEADLRRGIEAASALLYEMGI"
     gene            738..1763
                     /locus_tag="VEQ16_01730"
     CDS             738..1763
                     /locus_tag="VEQ16_01730"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYP62574.1"
                     /translation="MKPESYKAAIFRGPGKVDVVDLPYPACGDDEAIVRNVLTGICGS
                     DIFAFQKHGPTSRIWIDEEFGHEAISEVVELGRNVRGLNIGDRVFVNTGKAMRDPRRV
                     SATGGFSNYLRIPQCEVGYSLLPIDGDLPLRTAVLFEPFVIGTRGVKVLQPQQGDHAV
                     VFGAGIIGMTSAVMLKYYGCDKVMVVDLSDFRLENARRLGFLTCNLASENLKEKAFEA
                     FGTRPGYPAQKCGARLYVDAVGVASVIENFAMLAPRNGSISLVGVHKTPVPLDLTQVA
                     FNNWHIHGCGDGATEDFLPEILAMMRSGRFDLSSLVTHEFPVERINEALELAGKADQA
                     QKVCISF"
     gene            1836..2870
                     /locus_tag="VEQ16_01735"
     CDS             1836..2870
                     /locus_tag="VEQ16_01735"
                     /inference="COORDINATES: protein motif:HMM:NF024039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator
                     ligand-binding domain-containing protein"
                     /protein_id="HYP62575.1"
                     /translation="MSTAPYDAVNEYILAEFSALVRALGGEPDVLLWQAGIDPAFFES
                     GSYKPAYRQMVRLVALAATQLQCLDFGMRLAKAQYETIRSPLLQLVEACRTLGEALEQ
                     VTAHSNAHSPAAAIWLRRAPSGETVTLGHDILLDGLPQRAQAMEQILLAAHLVICKIM
                     GGSVRARRICFRHQPISPLRTYRHYFGCEVKFGQQEDAIIFRQRDMACPTARPDEHAF
                     SAALDYIDGQDFGRPPLHARVRGMVMNLLGTEQCRNEYVADALHLQTRAMHRQLAAEG
                     TSFQRIKNEVRRELLTYYLELTRLDLTLVSERLGFAEQSALTYFSRKWLGGAPSLIRS
                     RAVSVQNEQV"
     gene            2924..3940
                     /locus_tag="VEQ16_01740"
     CDS             2924..3940
                     /locus_tag="VEQ16_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010510265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HYP62576.1"
                     /translation="MKAMKLGKPASLDALTLVDGEVPAPGPGEIKVRLHAASLNFRDG
                     LVVNGFFPAPEGLIPLSDGAGEVVEIGPRVTGFAAGDAVVSTFHPNWRDGHIERAELN
                     NTPGGPADGYACTYATRPVSHFTRAPKGLTHAESATLTCAGVTAWRAVITDGKVKPGA
                     TVLVQGTGGVSLFALHFAKAAGARVIATSSSAEKLARLKALGADEIINYRETENWGEV
                     ALTLTGGLGIDHIVEVGGPHTLKQSFIAARTGGHVAIIGAVGGFEIDNMPFAIVQAKR
                     LRLQAVTVGSRQDQLDMVRGIETHGIRPVIDSSFPLAKLADAFRHLKTGQHFGKICID
                     ITEA"
BASE COUNT          717 a         1123 c         1311 g          804 t
ORIGIN      
        1 gggcagaggc tggatatatt gttcggtgat gtgatggcgg atgatatcgg cacggcgcag
       61 aagctgctgg cctttgcggg actggagccg aatgcggaga gtgttgccga catgcgcgct
      121 tatatggaca gccacccgcg cggcaaggat gggcgtgtgg tgtatgatct ggcgggcgat
      181 ttcaatctcg acatcgccgc attgcgccag cgtttctcgt tttataccga tcgattcaat
      241 gtcaggcagg aggtcaagtc atgagcacac cggtccgcga cgccaatcag ccgcttaacg
      301 cgcagatcat caatgacggt gccggaaagc aggatgcggt cgatctcggt catggcatct
      361 tcatgtcgaa ggatgtgtcc aacctctatc tcgtgctgac gggagacgga aatgtcctca
      421 tcaataccgg catcatctat agcgcggccg agaataagag gcgctttgat gcggtgagtg
      481 atgcgcctct gcgcagatgc agatcggcga tgtcatcatc ggctccaccg ggcgtccggc
      541 gccgggcggg cgcgtgcata tcggcgaggg cgagttgccg ctaaagcgca tgatgcagga
      601 tgtgctcgat gccggctata aaggtttgtt cgaccttgag gtggtgccgg cgaattttgc
      661 tgccggatgc gacgaggcgg acttacgccg cggcatcgag gcggcttccg cgctgctcta
      721 tgaaatgggg atataagatg aaaccggaaa gctacaaagc cgccatcttc cgtggccctg
      781 gcaaggtgga tgtggtggat ttgccctacc ccgcatgcgg tgacgacgag gcgattgtgc
      841 gcaacgtcct caccggcatt tgcggctccg atattttcgc cttccagaaa cacgggccca
      901 ccagccgcat ctggatcgac gaggaattcg gccatgaggc gatcagcgag gttgtcgagc
      961 tcggccggaa tgtgcggggg ctgaatatcg gtgaccgcgt cttcgtcaat accggtaagg
     1021 cgatgcgcga cccccgccgc gtctccgcca cgggcgggtt ctccaattat ctgcgcattc
     1081 cgcagtgcga ggtgggctac agcctgctgc cgatcgatgg tgatttgccg ctgcgcaccg
     1141 ccgttttgtt cgagcccttc gtcatcggca cgcgtggggt gaaagtgctg cagccgcagc
     1201 agggcgatca tgccgtcgtg ttcggtgccg gcatcatcgg catgaccagc gcggtcatgc
     1261 tcaaatatta tggctgcgac aaggtaatgg tcgtggatct gtcggatttc cggctggaaa
     1321 atgcgcgccg gcttggtttt ctcacctgca atctggcaag tgagaatttg aaggaaaagg
     1381 ccttcgaggc gttcggcacg cgccccggtt atccggcgca gaaatgcggg gcgcggcttt
     1441 atgtcgatgc ggtgggtgtc gcctcggtca tcgagaattt cgccatgctg gcgccgcgca
     1501 atggcagcat ctcgctggtg ggtgtgcata aaacgccggt gccgctcgat cttacgcagg
     1561 tcgccttcaa taactggcat atccatggct gcggcgatgg cgccacagag gatttcctgc
     1621 cggagattct cgccatgatg cgctccgggc ggttcgattt gtcctcgctg gtgacgcatg
     1681 aattccccgt ggagcggatc aatgaggcgc ttgaactggc cggtaaggca gaccaggcgc
     1741 agaaggtttg catatccttc tgacggggat tttgccggat tcagcgccgc gcgtataaca
     1801 aggctggaaa tgtcaccggc ggatgggaaa ctctgttgag cacggcgccc tatgatgctg
     1861 tgaatgagta tatattggcc gagttctccg ccctggtccg cgcgctgggc ggggagcctg
     1921 acgtgctgct gtggcaggcg ggcatcgatc ccgctttttt cgagagcggc agctataagc
     1981 cggcctaccg gcagatggtg cggctggtgg cactggccgc cacgcagctg caatgccttg
     2041 atttcgggat gcgcctggcc aaggcccagt atgaaaccat ccgcagcccg ctgctgcagt
     2101 tggtcgaagc ctgccggacc ctcggtgagg cgctggaaca ggtcacggcg cacagcaacg
     2161 cgcatagtcc cgccgctgcc atctggctcc ggcgcgcgcc ctctggcgag acggtgacgc
     2221 tcggccatga catattgctc gacggtctgc cgcagagggc gcaggccatg gagcagatat
     2281 tgctcgcggc ccatctggtc atatgcaaga tcatgggcgg cagcgtgcgg gcgcggcgca
     2341 tctgcttccg ccaccagccc atctcgccct tgcgcaccta ccggcattat tttggctgcg
     2401 aggtcaaatt cgggcagcag gaagatgcca tcatcttccg ccagcgcgac atggcctgcc
     2461 cgaccgcgcg cccggatgag catgctttca gtgcggcgct ggattatatc gacgggcagg
     2521 atttcgggcg cccgcctctg catgcgcgag tgcggggcat ggtgatgaat ttgcttggca
     2581 cggagcaatg ccggaatgaa tatgtagctg atgcgctgca cctccagacg cgcgcgatgc
     2641 atcgccaact ggcggcggag ggcacatcgt ttcagcgcat caagaacgag gtgcggcggg
     2701 agctgctcac ttattatctc gaattgacgc ggctcgattt gacgctagtt tcggagcggc
     2761 tgggctttgc cgaacaatcg gcgctcacct atttcagccg caaatggctg ggtggcgcgc
     2821 cctcgctcat ccggtcgcgg gccgtgtctg tccaaaacga gcaagtctga ggtccggctt
     2881 ttcgtccagg ttcctgcgcg aagaagagtg aatggggatg ttcatgaagg ccatgaagct
     2941 gggcaagcct gccagcctgg acgcgttgac gcttgtggac ggggaggttc cggcgccggg
     3001 gccgggcgag attaaggtgc ggctgcatgc cgcctcgttg aatttccgcg acgggttggt
     3061 ggtgaacggg tttttcccgg cgcctgaggg gcttattcct ttgtccgacg gggcagggga
     3121 ggtggttgaa attggccctc gtgtcactgg ctttgccgcg ggcgatgcgg tggtgagcac
     3181 gttccatccc aattggcgcg atggccatat tgagcgcgcc gagctcaaca acacgcctgg
     3241 cgggccggcg gatggctatg cctgcaccta cgccacgcgg cctgtcagcc attttacccg
     3301 cgccccgaag gggttgaccc acgcggagag cgccacgctt acctgtgccg gcgtgactgc
     3361 ctggcgcgcc gttattacag acggcaaggt gaagccgggg gcgacggtgc tggtgcaggg
     3421 cacgggtggt gtttcgctgt tcgcgctgca cttcgccaag gcggccgggg cgcgcgtcat
     3481 cgccacctcg tccagcgctg aaaaactcgc gcggctgaag gcgctgggag cggatgagat
     3541 catcaattac cgcgaaacgg agaattgggg cgaggtggcg ctgacgctca ccggtgggct
     3601 cggcatcgac catattgtcg aggtcggcgg tccgcatacg ctgaagcaat ctttcatcgc
     3661 cgcgcgcacg ggcgggcatg tcgccatcat cggcgcggtt ggcgggttcg agattgataa
     3721 tatgcccttc gccattgtcc aggccaagcg gctgcggctg caggctgtta cagtgggcag
     3781 ccgccaggac cagctcgaca tggtgcgcgg catcgagacc catggcatca ggccggtcat
     3841 cgatagcagc tttccactcg caaaactcgc cgatgccttc cgccacctga agaccggaca
     3901 gcatttcggc aaaatctgca tcgacatcac agaggcatga ccgtgacata cacaa
//
LOCUS       DASQCV010000117         2638 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1514962, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000117 DASQCV010000000
VERSION     DASQCV010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2638
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1514962"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..732
                     /locus_tag="VEQ16_01745"
     CDS             <1..732
                     /locus_tag="VEQ16_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparinase II/III-family protein"
                     /protein_id="HYP62577.1"
                     /translation="LAQAARARGNLSPLTSCGLQRVAAAKAVLFMDAGAPCGPGLDRL
                     SHAGTLSFEYSFGKERLIVNCGAAPALSGGWASALRATAAHSTLIIADVSSSEIKDTG
                     LGRRASQVHAHRQNLGGVHWLEASHDGWQKLFGAVHHRRLGLTENGEELQGEDLIEAA
                     TPQPFAIRFHLHPNVTASLQQDGETVLLRTPSGLGFRLRAEGTAPRVEESVYFGQAEP
                     RRAEQIVLPGHQDGPQHIKWTITRV"
     gene            734..1747
                     /gene="galE"
                     /locus_tag="VEQ16_01750"
     CDS             734..1747
                     /gene="galE"
                     /locus_tag="VEQ16_01750"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HYP62578.1"
                     /translation="MRVLLTGGAGYIGSHTAAVLCERGHEVVILDNFANAQRDVPARL
                     ERLTGCKIPVIEADIRDVETVTTALRANPVDAVIHFAALKAVGESEVDPLLYYDMNII
                     GTIRLLQAMQAAGVARIVFSSSATVYGQPDSSPILEDFPTRVENIYGRTKLVMEDLIR
                     DLARTKKLRAAANLRYFNPVGAHPSAQIGETPRGVPNNLMPYVSQVATGERPHLNVFG
                     NDYDTPDGTGVRDYIHVMDLAEAHALALEHIFAHDVSITVNLGTGEGTSVLQLVQAFE
                     TATGRKIPVVIAPRRPGDVASYYANPALAEATFGWRAKLNVEDMCRDSWRWQAARVGI
                     NDV"
     gene            complement(1770..>2638)
                     /locus_tag="VEQ16_01755"
     CDS             complement(1770..>2638)
                     /locus_tag="VEQ16_01755"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HYP62579.1"
                     /translation="SPARISRDLEPRIREVVVEMIEAIREKGEVDMAWDFARVYPVRI
                     FMGLMGFPAPMFEQFLAWEWDILHSNSLEKMQAALRGVLEFLRGFMAEKEKNPDEHLV
                     SSIVNGRIEGRAPTEEEKIGMVWFLWLGGLDTVAATISQMYRRMALQPSIQTQLRNQP
                     ELINGAVEEFLRTQPILSSTRSARKDFEWHGVQIKQGDVFSCLNPAGNFDATRFANPR
                     EFDPTRKGNRHFTFVAGVHACLGAHLARRELRLLLEEWFARIPEFRVKPGADTTVFPG
                     LLSIRNLPLVWD"
BASE COUNT          498 a          807 c          869 g          464 t
ORIGIN      
        1 ctggcccagg cggcgcgggc gcgcggcaat ctctcgcccc tcacctcctg cgggctgcag
       61 cgcgtcgccg cggcgaaagc cgtcttgttc atggatgcgg gcgcgccgtg cggtccgggg
      121 ctggaccggc tgagccatgc cgggacgctg agcttcgaat attccttcgg caaagagcgg
      181 ctgattgtga attgcggcgc cgcacccgcg ctgagcggcg gctgggccag cgcgctgcgc
      241 gccaccgccg cgcattccac gctgatcatc gccgatgtct cctcctccga aatcaaggac
      301 accggcctcg gccgccgggc gagccaagtg catgcgcacc ggcaaaatct ggggggggta
      361 cattggctag aagcaagcca tgatggctgg cagaaattgt tcggcgccgt gcatcatcgc
      421 cggctcggcc tcacggaaaa tggcgaggag ttgcaaggcg aggacctgat cgaggcggcg
      481 acaccgcagc ctttcgccat acgcttccat ctgcatccca acgtcaccgc aagcctgcag
      541 caggatggcg agacggtgct gctgcgcacg ccgtcaggcc tcggcttccg cctgcgcgcg
      601 gaagggaccg cgccgcgcgt ggaggagagc gtgtatttcg gccaggccga gccgcgccgg
      661 gccgagcaga tcgtgctgcc cggccaccag gacggaccgc aacatatcaa atggaccata
      721 acgagggtgt gacatgcgtg tgctgctgac gggtggagca ggctatatcg gatcgcacac
      781 ggctgccgtt ctgtgcgagc gcggccatga ggtcgtcatc ctcgataatt tcgccaatgc
      841 ccagcgtgat gtgccggcgc ggctggagcg gctgacggga tgcaagatcc cggtgatcga
      901 ggccgacata cgcgatgtgg aaaccgtgac gacggcgctg cgtgcgaacc ctgtggatgc
      961 ggtcatccat ttcgccgcgc tgaaggcggt gggcgagagc gaggtcgacc cgctgcttta
     1021 ttacgacatg aacatcatcg gcacgatccg actgctgcag gcgatgcagg cggctggtgt
     1081 ggcgcgcatc gtgttctcct cttccgccac cgtgtacggg cagccggaca gctcgccaat
     1141 ccttgaggat tttccaacca gggttgagaa tatctatggc cgcacgaagc tggtgatgga
     1201 ggatctgatc cgcgatttgg cacggacgaa gaagctgcgg gcggcggcca atctgcgcta
     1261 tttcaatccg gtgggcgcgc atccttccgc gcagatcggc gagacgccac gcggcgtgcc
     1321 gaataatttg atgccttatg tgtcccaggt ggcgactggc gaacggccgc atctgaacgt
     1381 gttcggcaat gattacgaca cgccggatgg gacgggcgtg cgggattata tccatgtgat
     1441 ggatctggcc gaggcacatg cgctggcgct ggagcatatt tttgcccatg acgtttcaat
     1501 cacggtgaat ctcggcaccg gcgaagggac gtcggtgctg cagctggtgc aggcgttcga
     1561 gacagcgacg gggcggaaga taccggtggt gatcgcgccg cggcggcctg gggatgtggc
     1621 ttcatattat gccaacccgg cactggcgga ggcgacgttt ggctggaggg caaagctgaa
     1681 tgtcgaggat atgtgccggg attcttggag gtggcaggcg gcgcgggtgg gaatcaacga
     1741 cgtctaaccc cgcctagccg gcgaaacatt cagtcccaca ccaacggcaa attccgaatc
     1801 gacaacaagc ccggaaacac tgtcgtatcc gcgcccggct tcacgcggaa ttcgggaatg
     1861 cgcgcaaacc attcctccag caaaagccgc agctcgcgcc gcgccagatg cgcacccaaa
     1921 caggcatgca cgccagcgac gaaagtgaaa tgccggttgc ccttgcgggt gggatcgaat
     1981 tcacgcgggt tggcgaaacg cgtggcgtcg aaattgccgg ccgggttgag gcaggagaag
     2041 acatcgccct gcttgatctg cacgccgtgc cattcgaaat cctttcgtgc tgagcgggtg
     2101 gaacttaaaa tcggttgggt ccgcaggaac tcctccacgg cgccgttgat cagctccggc
     2161 tggttgcgca gctgggtctg aatggagggc tgcagcgcca tgcggcgata catctggctg
     2221 atggtcgcgg ccaccgtgtc cagcccgccg agccagagga accagaccat gcctatcttc
     2281 tcctcctccg tgggggcgcg gccctcgatg cgaccattga cgatggagga gacgagatgc
     2341 tcatccggat ttttctcctt ctccgccatg aagccgcgca gaaattccag cacgccgcgc
     2401 aaagccgcct gcatcttctc caggctgttg gaatggagaa tatcccattc ccaggcgagg
     2461 aactgctcga acatcggcgc cgggaagccc atcagcccca tgaagatgcg caccgggtag
     2521 acgcgggcga aatcccacgc catgtccacc tcgcccttct ccctgatggc ctcgatcatc
     2581 tccaccacca cctcgcggat gcgcggctcc agatcgcgcg agatgcgcgc cggggaga
//
LOCUS       DASQCV010000118         1584 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2841465, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000118 DASQCV010000000
VERSION     DASQCV010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2841465"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1177)
                     /locus_tag="VEQ16_01760"
     CDS             complement(<1..1177)
                     /locus_tag="VEQ16_01760"
                     /EC_number="2.6.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HYP62580.1"
                     /translation="MSSEEFHRIRRLPPYVFAEVNDAKAKARAAAEDIIDLGMGNPDS
                     PTPAHIVAKLVETVQDPRSHRYSTSKGIPGLRRAQAAYYERRFGVKLDPETEVIATLG
                     SKEGLANLAAAITSPGDTILVPNPSYPIHQFGFIIAGASVRSIPAHPGEDMLRAIDQA
                     VRHSVPKPTAVIVNFPSNPTAYMADLDFYKDLVAVAKKNDIFIISDLAYAEIYFDGNP
                     PPSVLQVEGAKDITVEFTSMSKTYSMPGWRMGFGVGNPRLIKALTRMKSYLDYGAFTP
                     IQVAAVAALNGPQDCVEEMRTLYRERRDILIKGLHQAGWDVPSPDGSMFAWAPIPERY
                     KHLGSIEFSKLLMAKAKVAVAPGIGFGEYGDGHVRIALVENAHRLRQALRNIKQFLAT
                     "
     gene            complement(1213..>1584)
                     /locus_tag="VEQ16_01765"
     CDS             complement(1213..>1584)
                     /locus_tag="VEQ16_01765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62581.1"
                     /translation="VPPVPNVPGISIPATPTPSPGLNTATAPAPAPPPPPPAPPVAIG
                     FVPGKALLTFNENKKVTDVALSRGDANVIAGGFGEGSLTLALARARRLADALTAAGVP
                     AGNIRLVASQAGSGGFVQLVY"
BASE COUNT          289 a          515 c          508 g          272 t
ORIGIN      
        1 cggtggcgag gaactgcttg atgttgcgca gcgcctggcg cagccggtgc gcattctcca
       61 ccagcgcgat gcgcacatgc ccgtcgccat actcgccaaa cccgataccc ggcgccacgg
      121 ccaccttggc cttggccatc agcagcttgg agaattcaat gctgccgaga tgcttgtagc
      181 gctccggaat cggcgcccag gcgaacatcg agccatccgg gctcggcaca tcccacccgg
      241 cctggtgcag ccctttgata agaatatccc gccgctcgcg gtacaaggtc cgcatctctt
      301 ccacgcaatc ctgcggcccg ttgagcgccg ccaccgccgc cacctggatc ggcgtgaagg
      361 cgccgtaatc gaggtacgac ttcatgcgcg tcaacgcctt gatcagcctc ggattgccca
      421 cgccgaaccc catgcgccag cccggcatgg aataggtttt ggacatcgag gtgaattcca
      481 ccgtgatgtc cttcgccccc tccacctgca gcacggaagg cggcgggttc ccgtcgaaat
      541 agatctcggc ataagcaagg tcggagatga tgaagatgtc attcttcttc gcgaccgcga
      601 ccagatcctt ataaaaatcc aaatccgcca tataggccgt cgggttggac gggaaattca
      661 cgatcaccgc tgtcggcttc ggcacggaat ggcgcaccgc ctggtcgatg gcccgcagca
      721 tatcctcgcc cggatgggcg ggaatggagc gcaccgaggc cccggcgatg atgaagccga
      781 actggtgaat gggataagac ggattcggca ccagaatcgt gtcaccaggg ctggtgatag
      841 cggcggccag attggccagc ccctccttgg agcccaaagt ggcgatcacc tccgtctccg
      901 ggtccagctt caccccgaag cggcgctcat aataggccgc ctgggcgcgg cgcaggccgg
      961 gaatgccctt ggacgtggaa taacgatggc tgcgcgggtc ctgcaccgtc tccaccagct
     1021 tggccacgat atgcgccggc gtgggggagt ccggattgcc catgcccaga tcgataatat
     1081 cctcggccgc ggcccgggcc ttggccttgg cgtcattcac ctcggcaaag acgtaagggg
     1141 gcaggcggcg tatgcggtga aactcttcag aggacattct cgacactcaa ggctcaggtt
     1201 gttggtgagg gcttaatata ccaattgcac gaagccgcca gaacccgcct ggctggcgac
     1261 gagccttata ttaccggccg gcaccccggc ggcggtcagc gcatcggcca ggcgccgggc
     1321 ccgggcgagc gccagcgtga ggcttccctc gccgaatccg cccgcgatca cgttcgcatc
     1381 gccgcgcgag agggccacat ccgtcacctt cttgttctca ttgaatgtca gcagcgcctt
     1441 gccgggcaca aagccgatgg caaccggcgg ggcagggggc ggcggtggcg gcgccggtgc
     1501 cggcgcggtg gcggtgttaa ggccggggct cggggtcggg gtggcgggaa tgctgatgcc
     1561 cggcacgttc ggcaccggcg gcac
//
LOCUS       DASQCV010000119         1768 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3008074, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000119 DASQCV010000000
VERSION     DASQCV010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3008074"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            241..780
                     /gene="infC"
                     /locus_tag="VEQ16_01770"
     CDS             241..780
                     /gene="infC"
                     /locus_tag="VEQ16_01770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012975035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HYP62582.1"
                     /translation="MARPPAPPAPPSREGPRVNEEIRIPQVRLIDQDGEMIGVLATRD
                     AIARAYAAGLDLVEISPNAEPPVAKILDYGKFKYEQQKKRNEARKKQKVVEIKEVKVR
                     PNIDENDYQVKLRAMKSFIGEGDKVKVTLRFRGREMAHQELGVKVLERIRGDMEVDTK
                     VEQMPKMENRQMVMVLAPK"
     gene            1272..>1768
                     /locus_tag="VEQ16_01775"
     CDS             1272..>1768
                     /locus_tag="VEQ16_01775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62583.1"
                     /translation="MNGGLFAQAPRLGHGGGEFGFQGGADIDGRFGDGRLGLAVGALF
                     VAVALLEILARTLFEAAVLAVVTIVAVIAIILAVLPELLPVLAELLPVLPVLPVLPVL
                     VVLAVVLAVVWPVFKTRLLAFAFGGLLVITLLAVLRLVGRALGLVNGTDDAEIMFRVL
                     VISFA"
BASE COUNT          320 a          512 c          595 g          341 t
ORIGIN      
        1 tgccgagcac ctccgtggcg ctgaactgtt gcacacccag gtgaccggat tcccgatgat
       61 agacatagcc ttgtttctcc ctggaaaggg gcaaaaagga gtcttggacc tttagttggt
      121 gtatttacgt cctaattaca ccttcagggc gcgaaatgca gctcatctat tgaggtggat
      181 tgcttttctt caccattttg ccctaagccg tgagccgtaa ccgtagcagg agacttcaca
      241 atagccagac cgccagcgcc acccgccccg ccatcacgcg aaggacccag ggttaacgaa
      301 gaaatcagaa ttccgcaggt gcggttgatc gaccaggacg gagagatgat cggtgtgctc
      361 gccacacgcg atgccattgc ccgtgcctac gccgcaggac tcgacctggt ggagatcagc
      421 cccaacgccg agccgccggt ggcgaaaatc ctcgattacg gcaagttcaa gtacgaacag
      481 cagaagaaac gcaacgaggc gcgcaagaag cagaaggtcg tcgaaatcaa ggaggtgaaa
      541 gtccgcccca atatcgacga gaacgactat caggtgaaac tgcgcgccat gaagagcttc
      601 atcggcgaag gcgacaaggt gaaagtcaca ctgcgcttcc gcggccgcga aatggcccac
      661 caggaactcg gcgtgaaagt gctcgaacgc atccgcggcg acatggaagt cgacaccaaa
      721 gtcgaacaaa tgcccaaaat ggaaaaccgc cagatggtca tggtcctggc gccgaaatag
      781 cgcccggata agcccggctt tgtgccgtta ccccaggggg cgctgccccc tggacccccg
      841 ttagggggcg tcgcgccaga ggcgcgccta ttcagctttc ggcgcccctc cggggcgacg
      901 gcccctagaa ccccgtccgg cattggaaaa gggagcgccc tatccctggg tctggcaagc
      961 acagcgtgct ggccagaccc agggataggg cgctcccttt tccaatgccg aattgatggg
     1021 ggtctggggc ctcaggcccc agctgggggg caggggggac agcgtccccc ctgcgagtca
     1081 caagcacaat gctgggctta ttcggacggc gtttcagcct tggccgcgcg ggggcggccg
     1141 cggcggcggg gggcggcagc cgcggccggt tcttcagcgg gggcttcggc tgcaggcggg
     1201 gcttcggcgc tgatggggat ggagcggggc tccggcgtag ggattagcaa ttcctgctgg
     1261 atggccggct ggtgaatggc gggctgttcg ctcaggcccc gcggctcggc cacggcggcg
     1321 gcgagttcgg cttccagggc ggagctgata tcgatgggcg cttcggcgat gggcggttgg
     1381 ggctggcggt aggggcgctg ttcgttgcgg tcgcgctgct ggaaatcctg gcgcggacgc
     1441 tgttcgaagc ggcggtcctg gcggttgtca cgattgtcgc ggttatcgcg attatcctgg
     1501 cggtcctgcc ggaactcttg ccggtcttgg cggaactctt gccggtcctg ccggtcctgc
     1561 cggtcctgcc ggttctggtg gtcttggcgg ttgtcttggc ggttgtctgg ccggttttca
     1621 aaacgcggct gctcgccttc gccttcggcg gcttgctggt aattaccctg ctggccgttc
     1681 tgcggctggt tgggcgtgcc ttgggcctgg ttaatggcac tgatgatgcg gaaataatgt
     1741 tccgcgtgct ggtaataagc ttcgccga
//
LOCUS       DASQCV010000120         2357 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2841957, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000120 DASQCV010000000
VERSION     DASQCV010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2841957"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..796
                     /locus_tag="VEQ16_01780"
     CDS             <1..796
                     /locus_tag="VEQ16_01780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alanine racemase C-terminal domain-containing
                     protein"
                     /protein_id="HYP62584.1"
                     /translation="GIIPVLGSLHEVTLWQAQAQILGRPLPCFLQLDTGMHRLGLSQG
                     ELARLYQDESLLAGLRVDVVMTHLLASDVPEDRNNDRQARLFSELVKQFPGVKTSFAN
                     SSGMFLGERFFSDLARPGAALYGLNPTPGHPNPMRNVVRLSANILQIHELEPGDTVGY
                     CGTWQARRPSRIATIGVGYADGYHRSLANKGVAYFDDTPVPLVGRVSMDLSTFDVTGV
                     PANIGDRLTLLGAAHGADALAEEAGTNGYEILTSLGRRFARRYVGA"
     gene            793..1578
                     /locus_tag="VEQ16_01785"
     CDS             793..1578
                     /locus_tag="VEQ16_01785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003629138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP62585.1"
                     /translation="MNKLLDLVALLGAAVLGFVAYLGEVAIFASTGLSHIFRPPFYPR
                     QVGRAFMDIGFFSLPVVALTALFTGMVLALQSYTGFSRFGAESAIASVVVLSVTRELG
                     PVLAGLMVSGRAGAAMAAELGTMRVTDQIDALSTLSTDPMKYLVAPRLLAGIIALPLL
                     VALADILGVAGGYLVSVHKLGFSPHGYLTSTFTNLEVQDVVSGLIKASVFGFTIALMG
                     CFNGYRSKGGAQGVGTATTAAVVSASILILALDYVLTQILFVK"
     gene            1575..2345
                     /locus_tag="VEQ16_01790"
     CDS             1575..2345
                     /locus_tag="VEQ16_01790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015073001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP62586.1"
                     /translation="MSQPKIRVRGLKKAFGSKVVLDGVDLDVEHGTAMVVIGGSGTGK
                     SVLIKSILGLVTPDSGVIEIDGEDVLKAPSARAKELRGQIGMLFQNGALFDSLPVWEN
                     VTFGLLAQKRIQRHAARDKAVEILSLVGLGEDVAKLSPAELSGGMQKRVALARAIAAE
                     PAIMFFDEPTTGLDPIMGAVIDELIVDCVKRLGSASIAITHDMASAQRIGDNAAMLYE
                     GKVTWTGPARELLTSTNQVVDQFTHGRADGPIKMALRR"
BASE COUNT          397 a          787 c          728 g          445 t
ORIGIN      
        1 cggcatcatc cccgtgctcg gctcgctgca tgaagtcacg ctgtggcagg cccaggcgca
       61 aatcctaggc cgtcctttgc cctgcttcct gcagctcgat accggcatgc ataggctggg
      121 attgagccag ggcgagctgg cgcggctcta ccaggatgag tctctactcg ccgggctgcg
      181 ggtggatgtg gtgatgacac atctgctcgc ctccgatgtg ccggaggacc gcaataatga
      241 ccgccaggcc aggctctttt ccgaattggt gaaacagttt cccggcgtga agacgagctt
      301 cgccaattcc tccggcatgt ttctgggcga gcgtttcttc tccgacctgg cgcggccggg
      361 ggcagcactt tacggcctca accccacgcc gggacacccc aacccgatgc gcaacgtggt
      421 gcggctcagc gcgaacatat tgcagatcca cgagctggag cccggtgata cggtgggcta
      481 ttgcggcaca tggcaggcca ggcgcccaag ccggattgcc accataggtg tcgggtatgc
      541 ggatgggtat catcgcagcc ttgccaacaa gggggtggcg tattttgacg atacccccgt
      601 gcccctggta ggccgtgtgt cgatggacct ctccaccttc gacgtgaccg gcgtgccagc
      661 caatatcggc gaccggctga ccctgctggg ggcagcacac ggcgccgacg cgctggccga
      721 agaggcgggg accaacggct atgaaatcct cacctccctg gggcggcgct tcgcgcgacg
      781 ttatgtaggc gcatgaataa attgctcgat ttggtagcgc tgctgggcgc ggcggtgctg
      841 gggtttgtcg cctatctggg cgaggtggcg atcttcgcct caaccggcct ctcgcatatt
      901 ttccgcccac ctttctaccc gcgccaggtc ggccgggcct tcatggatat cgggtttttc
      961 tcgctgcccg tggtggccct caccgcgctc ttcaccggca tggtgctggc gctgcaatcc
     1021 tataccggct tctcgcgctt cggcgcggaa agcgccatcg cctcggtggt ggtgctgtcc
     1081 gttacacgag agctggggcc agtgctggcg gggctgatgg tctcgggccg cgccggcgcc
     1141 gccatggcgg cggagctcgg caccatgcgc gtcaccgacc agattgacgc gctctccacc
     1201 ctctccaccg acccgatgaa atatctcgtg gcaccccgcc tgctggcggg catcatcgcg
     1261 ctgccactgc tggtggcgct ggcggatatt ctcggcgtgg ctggcggcta tctcgtctcg
     1321 gtgcataagc tcggcttctc cccacacggt tatctcacca gcaccttcac caatcttgaa
     1381 gtgcaggacg tggtctcggg ccttatcaaa gcctccgtgt tcggtttcac catcgcgctg
     1441 atgggctgct tcaacggcta ccgctccaag ggcggcgcgc agggcgtggg cacggcaaca
     1501 accgccgcgg tggtttcggc ctcgatcctg atcctcgccc tcgattacgt cctcacgcag
     1561 atattgttcg tcaaatgagc cagccgaaaa tccgcgtgcg ggggctgaag aaagccttcg
     1621 gcagcaaggt ggtgctcgat ggcgtcgatc tcgatgtcga gcacggcacc gccatggtcg
     1681 tcatcggcgg ctcgggcacc ggcaaatccg tgctgatcaa atccatcctc gggctcgtca
     1741 cgccggattc cggtgtcatc gagatcgacg gcgaggatgt gctgaaggcg ccctccgcaa
     1801 gagccaagga attgcgcggg cagatcggca tgctgttcca gaacggcgcc ttgttcgatt
     1861 cactccccgt atgggaaaac gtgaccttcg ggctgctcgc gcagaaacgc atccagcgcc
     1921 acgccgcgcg cgacaaggcg gtggaaatcc tctcccttgt cgggctcgga gaggatgtgg
     1981 cgaaactctc gcccgcggaa ctttccggcg gcatgcagaa acgcgtcgcc ctcgcccgcg
     2041 ccatcgccgc ggaaccggcc atcatgttct tcgacgaacc caccaccggc ctcgacccca
     2101 tcatgggcgc cgtcatcgac gaactcatcg tggattgcgt gaaacgcctc ggcagcgcct
     2161 ccatcgccat cacacacgac atggccagcg cccaacgcat cggcgacaac gccgccatgc
     2221 tctacgaagg caaagtcacc tggaccggcc ccgcccgcga gctgctcacc agcaccaacc
     2281 aagtcgtcga ccagttcacc cacggccgtg ccgacggccc catcaaaatg gcgctgcgcc
     2341 ggtgaagggc tgggggc
//
LOCUS       DASQCV010000121         1517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1847848, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000121 DASQCV010000000
VERSION     DASQCV010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1847848"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..1098
                     /locus_tag="VEQ16_01795"
     CDS             130..1098
                     /locus_tag="VEQ16_01795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019014470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HYP62587.1"
                     /translation="MFPSKEDVTICFAHAAYQMKARFDLRKTGIKSFQVWAYDELQKR
                     VGEADVVVVSGMWKNELIPAAGKLKFIQSISSGMDQYSKEQLAAKQVHLCSAAGVNAR
                     AVAEHAIALILAVARRLPEARDNQHKKMWRGMIGDLSQREDELGGKTLLVVGMGRIGA
                     HLAKLAKAFDMKVVGIRRDPKQGTNGADSIHGMAALVRLVPQADIVALTCALTPETTG
                     LMSAAAFAAMKPSAMFVNVARGKVADEAALIETMKAGKIWAAALDVTAEEPLPAASPL
                     WTMPNIFISPHTAGETRAYEDNVLDILMENLGHLWKGEAKLRNQVL"
     gene            1170..1373
                     /locus_tag="VEQ16_01800"
     CDS             1170..1373
                     /locus_tag="VEQ16_01800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62588.1"
                     /translation="MAPRAAAVRAQAPAPAAEQDELAAEAAARAPERELERAVAQPDA
                     GAAAAEPAAAVAARPGAEAAAAE"
BASE COUNT          239 a          475 c          567 g          236 t
ORIGIN      
        1 gccaggtcgt cgagcagggg ccggccgggg aagtattgct ccgtcccagg aatgcgcgta
       61 cggcatcgtt cctgtcccgc ttccacagca cgatcggcga gcgcagggca tagaacaggg
      121 agtttttgga tgtttccgtc gaaggaagac gtgacgattt gcttcgccca cgcggcgtac
      181 cagatgaagg cgcgcttcga cctgcgcaag accggcatca agagcttcca ggtatgggcc
      241 tacgatgaac tgcagaagcg ggtgggcgag gccgatgtcg tggtggtttc gggcatgtgg
      301 aagaacgagc tgatcccggc ggcgggcaag ctcaagttca tccagtcgat cagctcgggc
      361 atggaccagt attccaagga acagcttgcc gccaagcagg tccacctgtg cagcgccgcc
      421 ggggtcaatg cccgcgccgt ggccgagcat gcgatcgcgc tgatcctggc ggtggcgcgg
      481 cggctgcccg aggcgcgcga caatcagcac aagaagatgt ggcgcggcat gatcggcgat
      541 ctcagccagc gcgaggacga gctcggcggc aagaccctgc tggtcgtcgg catgggccgc
      601 atcggcgccc atctcgccaa gctcgccaag gcgttcgaca tgaaggtggt gggcatccgc
      661 cgcgatccca agcagggcac caacggcgcc gattcgatcc acggcatggc cgccctggtg
      721 aggctggtgc cccaggccga catcgtggcg ctgacctgcg cgctgacgcc cgagaccacc
      781 ggcctgatga gcgccgcggc cttcgccgcc atgaagccgt cggcgatgtt cgtcaacgtg
      841 gcgcgcggca aggtggccga cgaggccgcc ctgatcgaaa ctatgaaagc cgggaagatc
      901 tgggccgcgg ccctcgacgt caccgccgag gagccgctgc cggcggcatc gcctttgtgg
      961 acgatgccca atatcttcat cagtccgcac accgcgggcg agacacgagc ctacgaggac
     1021 aacgtgctcg acatcctgat ggagaacctc ggccacctgt ggaagggcga ggccaagctc
     1081 cgcaaccagg tgctctgaag caggctactt cttctcgtcg tccttcttct gcggagcagg
     1141 ctgcggcgcg ggatgctgct gcggcggcgg tggcgccgcg tgctgctgcg gtgcgggcgc
     1201 aggcgcctgc gcctgctgcg gagcaggatg agcttgcggc tgaggctgcg gcgcgggcgc
     1261 cggagcgtga gcttgagcgg gcggtggcgc agcctgatgc tggggctgcg gcggcggagc
     1321 ctgcggctgc ggttgcggcg cggccaggcg ctgaggctgc ggcggcggag tgaccgcccc
     1381 ctgaggcttc ggcggctcgg cctgaggctg aggcgccggc tgatgcggcg gcggcggagc
     1441 aaccggctgc tgggcctgct gcggctgcgg cttgggcggc gtggcttgtg gctgaggcgc
     1501 cggagtgacc gcccctt
//
LOCUS       DASQCV010000122         3060 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_24474, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000122 DASQCV010000000
VERSION     DASQCV010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3060
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24474"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..547)
                     /locus_tag="VEQ16_01805"
     CDS             complement(<1..547)
                     /locus_tag="VEQ16_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HYP62589.1"
                     /translation="MNSYRFSPRTESSLIFGAIPQPNDPADISRSWQRCRMAGLTPEQ
                     TRFDLPFYTPAERRAAIADNAALVAQARPVMEYIYGQIKNSSCLLLLSDTKGYLLEAA
                     GDTDFCGRAAKVALSPGACWAESQRGTNGIGTALVEGRAVVVKGAEHYLRANSFLACT
                     AAPLLSPSGALLGALDISLDSR"
     gene            824..1213
                     /locus_tag="VEQ16_01810"
     CDS             824..1213
                     /locus_tag="VEQ16_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HYP62590.1"
                     /translation="MAVATSLLLAGTAQAGSLPALFTAQQASAGADIYSQTCAICHGA
                     DMKGAAGPALIGQSFASPGSGATVGGIFSVIAQQMPASSPGSLSQSQDEEVMAYILKM
                     NGYPAGTNPLVYKDSLTSTVPLDSQVK"
     gene            1401..1865
                     /locus_tag="VEQ16_01815"
     CDS             1401..1865
                     /locus_tag="VEQ16_01815"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HYP62591.1"
                     /translation="MNRTAAQIMTKAPLTVVHPHDRIPVIASRLHEHHVSAAPVVDAA
                     DNLLGLVSEGDLIRHLGHELTERRDHWLELLAEGEDLAAEFLEYLKEENRTAADVMKH
                     EVVTVTEDTPVADIVDLFAKHGIKRVPVLREGKLVGIVSRSDIIQALAEGTR"
     gene            complement(1923..>3060)
                     /gene="priA"
                     /locus_tag="VEQ16_01820"
     CDS             complement(1923..>3060)
                     /gene="priA"
                     /locus_tag="VEQ16_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011632760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005658 - alpha DNA polymerase:primase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HYP62592.1"
                     /translation="TVLVSATPSLETAENAATGRYKKLDLPARHGGAALPEVHAIDLR
                     ADPPERGKFLSPRLITAMQETLARGEQAMLFLNRRGYAPLTLCRRCGHRISCPHCSAW
                     LVEHRSHARLICHHCGHTVQKPSQCPACETENSFVPIGPGVERIAEEVAEIFSGTEAL
                     VMASDIISGPVQAQEAAGRIERREVGIIIGTQMVAKGWHFPHLTLVGVVDADLGLAGG
                     DLRAGEHTVQMLHQVAGRAGRAEAPGRVLLQSFAPDHPVIMALLSGDLPEFLRQEAAL
                     RMPGHWPPFGRLAALIVTAAEERLADQIARDLARHAPRGEGIEVLGPAPAPISLLRGK
                     FRRRLLLKTARAIAVQPVLREWLAQVAVPRNVKVDVDVDPVSFM"
BASE COUNT          579 a          956 c          995 g          530 t
ORIGIN      
        1 agcgggaatc gagggagata tcgagcgcgc cgagcagcgc gccactaggc gagagcagag
       61 gtgccgctgt acaggcgagg aagctgttgg cgcgcagata atgctccgcc cccttcacca
      121 caacggcgcg gccctccacc agagcggtgc cgatgccgtt ggtaccgcgt tgcgattcgg
      181 cccagcaggc gcccggcgaa agcgccacct tggcggctcg gccgcagaaa tccgtgtcgc
      241 ccgcggcttc cagcagataa cccttggtat ccgagagcag gaggaggcag ctggaatttt
      301 tgatctgccc gtaaatatat tccatcaccg ggcgtgcctg ggcgacgagc gcggcattgt
      361 cggcgatggc ggcgcgccgt tcggcgggcg tgtagaaggg taggtcgaag cgtgtctgtt
      421 ccggcgtcag cccagccatg cggcagcgct gccaggagcg gctgatatcg gcagggtcat
      481 tgggctgggg tatggcgccg aatatgaggg acgattccgt ccgtggcgag aacctgtatg
      541 agttcatttt tggcgcatcc ttgcctgggg acgatgcccg gtttgttttg gcttgcacat
      601 gcgtaatatg ttcgtaggcg gcgcggatga ggatgggcaa gcaaaaaatc gccctgtgtc
      661 atttttgaac aatgttgcat tatgcaacat tgttgctgaa aaacttcgtg ccgcctgtct
      721 cgctcctggc cggtaagtcc cgaatatcat tgcccagttc cggcaaacac ggcaaaatgc
      781 cggcagtcat gggggagagc ggaatatgct caaaaaaggc ggattggctg ttgcaacgtc
      841 gctgctgctg gcgggcacgg cgcaggcggg ctcgctgccg gccttgttca cggcgcagca
      901 ggccagcgcc ggcgctgata tctacagcca gacctgcgcc atctgccatg gcgcggatat
      961 gaagggggcg gcgggaccgg ccctcatagg ccagagcttc gcctctcctg gcagtggcgc
     1021 cacggtcggc gggattttca gcgtcatcgc ccagcaaatg ccggccagct cccccggcag
     1081 cctcagccag tctcaggatg aggaagtgat ggcctatatt ctgaagatga atggctaccc
     1141 cgccgggacc aaccccttgg tttacaagga tagcctaacc tcgaccgtgc ctctggactc
     1201 gcaggtgaaa taggcggcgc cgcgcctgtg acgaggcgcg gattgcgatg ccaggattgc
     1261 aagaggcact gccatgaggc ggccgcgtgt aagacttgcg ctgcccctgc tggacggcaa
     1321 attccagaag ggattaagtt aatatgttac cggcccggaa ttgccggggc cggagcttca
     1381 gcacttttgt gaggcgcccg atgaaccgta ccgctgccca gatcatgacc aaagcaccac
     1441 tgaccgtggt gcatccgcac gaccgtattc ctgtcattgc ctctaggctc cacgagcatc
     1501 atgtgagcgc cgcccccgtg gtggatgcgg cggataatct gctcgggctg gtaagcgagg
     1561 gcgatctcat ccgccatctc ggccatgagc tgaccgagcg tcgtgaccat tggctggagc
     1621 ttctggcaga gggcgaggat cttgccgccg aattccttga atatctgaaa gaggagaacc
     1681 gcaccgccgc ggatgtgatg aagcatgagg tggtgacggt gaccgaggac acgccggtgg
     1741 cggatattgt cgatctcttc gccaagcacg gcatcaagcg cgtgccggtg ctgcgggagg
     1801 gcaagctggt ggggattgtg tcgcggtcgg acatcatcca ggcgctggct gaggggacgc
     1861 ggtagggcgc catccgccca ttgtgacagg ctggatcagc gtcgagggga agccaatccc
     1921 tgctacatga aggacaccgg atcaacatcc acatccacct tcacattccg cggcaccgcc
     1981 acctgcgcca gccattcccg cagcaccggc tgcacggcaa tcgcccgcgc cgtcttcaac
     2041 agcagccgcc gccggaactt tccgcgcaaa agcgagatgg gcgcaggagc ggggccaagc
     2101 acttcaatcc cctcgccccg cggcgcatgg cgggcaaggt cgcgggcgat ctgatccgcc
     2161 agccgctctt ccgccgcggt gacgatgagc gccgccagtc gtccgaaagg cggccaatgg
     2221 ccgggcatgc gcagcgccgc ttcctggcgc agaaattccg gcagatcgcc tgagagcagc
     2281 gccatgatga caggatggtc cggcgcaaaa ctctgcagca gcacccttcc aggcgcctcg
     2341 gcccgcccgg cgcgccccgc cacctggtgc agcatctgca ccgtatgctc gccggcgcgc
     2401 aaatctccgc cagcgaggcc gagatcggca tccaccaccc caaccagcgt gagatgcgga
     2461 aaatgccagc ccttggccac catctgcgtg ccgatgatga tccccacctc gcgccgctcg
     2521 atccgccccg ccgcctcctg cgcctggacc ggcccggaaa taatgtccga agccatcacc
     2581 aaagcctcgg ttccagaaaa aatctccgcc acctcctcgg cgatgcgctc cacgccgggc
     2641 ccgatgggaa cgaatgaatt ctccgtctcg caggccgggc attgggaggg tttttgcacc
     2701 gtatggccgc aatgatggca gatgagccgg gcatgggagc ggtgctccac aagccaggcc
     2761 gagcaatgcg ggcaggaaat gcggtgcccg cagcgccggc acagggttaa aggcgcatag
     2821 ccgcggcggt tgaggaacag catcgcctgc tcgccgcgcg ccaatgtctc ctgcatggcg
     2881 gtgatcagcc tgggggataa aaatttcccc cgttccggcg ggtcggcacg cagatcgatg
     2941 gcatgcacct ccggcaaggc ggcgccgcca tggcgggcgg gcagatcgag cttcttgtag
     3001 cgcccggttg cggcgttctc ggccgtctcc aggctcggcg tggcgctgac cagaaccgtg
//
LOCUS       DASQCV010000123         2146 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_24548, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000123 DASQCV010000000
VERSION     DASQCV010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24548"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..560
                     /locus_tag="VEQ16_01825"
     CDS             <1..560
                     /locus_tag="VEQ16_01825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="short-chain fatty acyl-CoA regulator family
                     protein"
                     /protein_id="HYP62593.1"
                     /translation="YDVDAIAARFGVSYEQACHRIATLQRAGQRGVPFFFLRVDPAGN
                     VSKRFSAAGFPFMRFGGTCPRWIVHSAFATPGIIRVQVAQLSEKETFLCFARSINGRP
                     ARWGEPPPVHVVAMGCDVSHASELVYGDGLDLQRAAVGIGLSCRLCERQDCRSRAFPP
                     IAHRLNIDPGKTSASPYEFTATPGR"
     gene            complement(593..1822)
                     /locus_tag="VEQ16_01830"
     CDS             complement(593..1822)
                     /locus_tag="VEQ16_01830"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HYP62594.1"
                     /translation="MTIVPTAYARSLLPLIDRALAEPGWLPAIPAPLQADYAVERLQQ
                     CRLFNRRLLILLTLVFDVYWVGEFVSAPEIVSLSGLLRFGLMTPAVILFVAWDRQGKI
                     GRYYGGWLLLLTLVPALISALLCIRASSAAAMLDIRATPLILLGTSLAVRMPPREFLI
                     NMVAVPAMYVASLCFAHVVPAGEIGSLALIELSVTAAAIGFNLQLEWRDRRMFLLNTA
                     DRIMRGLLEAANRGLVRETLTDALTGVANRRCFDDTLAMFWHRGLAQRGAVGLIMADI
                     DHFKRYNDYYGHQAGDDCLRRVAARIAALIREQDVLARYGGEEFAILLPDATPETVRG
                     VAERVRAGVEALALAHAGLSPSGIITLSLGYGCISPHRGAIMRDLVAIADGELYAAKR
                     GGRNMAMSARDDDGPVI"
BASE COUNT          408 a          744 c          637 g          357 t
ORIGIN      
        1 gctacgatgt cgacgccatc gccgcgcgct tcggcgtgtc ctacgagcag gcctgccacc
       61 gcatcgccac cctgcagcgc gccggccagc gcggcgtgcc gtttttcttc ctgcgcgtgg
      121 acccggctgg caatgtttcc aagcgcttct ccgccgcggg ttttcccttc atgcgcttcg
      181 gtggcacctg cccgcgctgg atcgtgcatt ccgccttcgc cacgcccgga atcatccgcg
      241 tgcaggtggc gcaattatcg gagaaggaaa ccttcctctg cttcgcccgc tccattaacg
      301 gccgcccggc gcggtggggc gagccgccgc cggtgcatgt tgtcgcgatg ggctgcgatg
      361 tctcccatgc cagcgagctg gtctatggcg acgggctgga tctgcagcgc gcggcggtcg
      421 gcatcggcct gtcctgccgg ctatgcgaac gccaggattg ccgctcccgc gcctttccgc
      481 ccattgccca ccggttgaat attgaccccg gaaagaccag tgccagccct tatgaattca
      541 cggccacgcc gggcagataa gagactgttt cagaagtcta ctctggcggc cgtcatatca
      601 ccggcccgtc atcatcccgc gcactcattg ccatattccg cccgccgcgc ttggcggcgt
      661 agagctcgcc atctgcaata gccacaaggt cgcgcatgat ggcgccgcga tgcggcgaga
      721 tgcagccata gcccaggctc agcgtgatga tgcctgacgg tgaaagtccg gcatgggcga
      781 gggccagcgc ctccaccccg gcacgcaccc gctccgcgac gccgcgcacg gtctccggtg
      841 tcgcatcggg cagcaaaata gcgaattcct cgccgccata gcgcgccagc acatcctgct
      901 cgcggatcag cgccgcgatg cgcgcggcca cccttcgcag gcaatcatcc cccgcctgat
      961 gcccgtaata atcgttataa cgcttgaaat ggtcgatatc cgccatgatc agcccgacgg
     1021 cgccgcgctg ggccaggccg cgatgccaga acatggccag cgtgtcgtcg aagcagcgcc
     1081 ggttggcgac gcctgtcagc gcatcggtca aagtctcgcg caccagcccc cgattggccg
     1141 cctccagcag cccgcgcatg atccggtcgg ctgtgttgag cagaaacatc cgccggtcgc
     1201 gccattccag ctgcagattg aagccgatgg cggccgcggt gacggacaat tcgatcagcg
     1261 ccagcgagcc gatctctccc gctggcacga catgggcgaa acagagcgag gcaacgtaca
     1321 tcgccggcac cgccaccata ttgatgagaa attcgcgcgg cggcatgcgc accgccaggc
     1381 tggtgccgag caggatcagc ggcgtggcgc ggatgtccag catcgccgcg gcggagctgg
     1441 cgcgtatgca gagcagggcg gagatgaggg ccggcaccag ggtgagcagc agcagccagc
     1501 cgccataata cctgccgatt tttccctgcc ggtcccacgc gacgaacagg atcaccgccg
     1561 gggtcatcag cccgaagcgc agcagcccgg acaggctgac gatctccggc gccgagacaa
     1621 attctcccac ccagtaaaca tcgaacacca gcgtcagcag aataagcagg cgccggttga
     1681 acagccggca ttgctgcagc cgctccaccg cataatccgc ctgcaacggc gccggaatgg
     1741 cgggcagcca gccgggttca gccaaggcac gatcgatcag cggcaacagg ctccgggcat
     1801 aggcagttgg cacgatcgtc atcccagcaa aacggcaggc ggactttaga ccaaacccgt
     1861 aaacaacccg tttccgcccg cccgttggtt gcgttgccgt ttacgaatcc ggacccgtac
     1921 cccgaggtag atgaaaaaat cgttaagttc ggcacggttg atgcaaatca acatcatagg
     1981 ccgctctagt tgcgctaagc tgccgccagc actgcaaagg atgatgcgtt atggccgaaa
     2041 agcccgccac agacccgttg gacctcctgc agctctcccg ggacttgctt gccaccccgc
     2101 aaagattcct cccctccaca catatctata cgcggatcgc cgagat
//
LOCUS       DASQCV010000124         1899 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2843160, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000124 DASQCV010000000
VERSION     DASQCV010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2843160"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..426
                     /locus_tag="VEQ16_01835"
     CDS             <1..426
                     /locus_tag="VEQ16_01835"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP62595.1"
                     /translation="LPPLFKQHWRELGRDRDEVILDPWWDKYMQEAIAGNLQILTARA
                     GEELVGYIFYLIGPHLHYKSTRHATVDMYWLDPRFRRGWVGYKMFRAYDNELKRLGVV
                     RSYIGENLSFKGKHGRMMRVILKRFGYRPCDVMYRKIVR"
     gene            490..1431
                     /locus_tag="VEQ16_01840"
     CDS             490..1431
                     /locus_tag="VEQ16_01840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62596.1"
                     /translation="MFGGGSNQPQMQPNPIPAGVGVNALTGGGLQGITQLPQYNLGGA
                     YMPAYETALSQYLQNPYGGGAIGAASQFGGAAQNIANQGFGNAAQIGGTVSPILQQAF
                     DPQQALFQRTSGQVSDRELAALSAMGLGTTPVGAGAYGQTMSDFNLNWQNQQLQRMLQ
                     GVQGAEGAGSSALGLGQSALGLGTTGGMAPFQAYGQVAGTPLGAYGGAAQYGQQAAAI
                     PQTGIGDWLSYLSASTGGQNAMTNLYGQQLAAQRQQFDQNKAFGQGIGAGLGGIAASP
                     FGTGIGSWMQGLGGGGGGVATVYPNPNVPGGYAPGYA"
BASE COUNT          354 a          570 c          603 g          372 t
ORIGIN      
        1 ctgccgccgc tgttcaagca acattggcgc gagcttggcc gtgaccgtga cgaggtcatt
       61 cttgatccgt ggtgggacaa gtatatgcag gaggccattg ccggcaatct gcagatcctg
      121 actgcgcgcg cgggcgagga gcttgtcggc tatatttttt atctgatcgg tccgcatctg
      181 cactacaaat caacgcgcca tgcgacggtt gatatgtact ggcttgaccc gcggtttcgt
      241 cgcggctggg tcggttacaa gatgtttcgc gcttacgata acgagctcaa gcggctcggc
      301 gtggtgcggt cttatattgg cgaaaatctc tcgttcaaag gcaagcacgg gcgtatgatg
      361 cgggtgatcc tcaaacgctt cggctatcgg ccttgtgacg tgatgtaccg caagatcgtg
      421 aggtagcgaa tggttggttc ggcagccctg atcggcggca tggcttcgct cggcggcggc
      481 ctcgccggca tgttcggcgg tggctcgaac cagccgcaaa tgcagcctaa cccaatccca
      541 gctggtgttg gcgtcaatgc tctgaccggc ggtggtctac aaggcatcac gcaactcccc
      601 caatacaatc tcggcggggc ttatatgccc gcctatgaga ctgcgctgtc acagtatttg
      661 cagaacccct atggaggtgg ggcgataggg gcggctagtc aatttggtgg ggcggcacag
      721 aacattgcga accaagggtt cggcaatgct gctcagatcg gcggcacagt ctcgccgatt
      781 ctccagcaag cgttcgaccc gcagcaggcg cttttccagc gcacgtctgg acaagtttcc
      841 gatcgggagc tcgccgcctt aagcgccatg gggctgggca ctacgccggt cggtgccggc
      901 gcctacgggc aaaccatgtc cgatttcaat ctcaattggc aaaaccagca gctgcaacgc
      961 atgttgcaag gcgttcaggg cgccgagggc gcggggtcta gcgcgctcgg cctcggccag
     1021 tcagcgctgg ggctaggcac gactggtggc atggcgccgt tccaggccta tgggcaggtt
     1081 gccggtacgc ctctgggtgc ctatggcggg gccgcgcaat atggtcagca agcagctgcg
     1141 ataccgcaaa ccggcattgg cgactggctg tcatatctga gcgcctcgac cggcgggcag
     1201 aacgccatga cgaatctgta tggccagcag ctggctgcac aacgacagca attcgaccag
     1261 aacaaggcct tcggccaggg catcggcgcc ggccttggcg gcattgccgc ctcaccgttc
     1321 ggcaccggca tcggcagttg gatgcaaggg ttaggcggtg gtggtggtgg tgtggcaacc
     1381 gtttatccta atccgaatgt tcctggcggg tatgcaccag ggtacgccta aatggtgaat
     1441 atcggcaccg ctttaggtgg gttgtcgggt atctacccgg cttacaccaa gagtctggaa
     1501 gatacctacc agaaccagca gtcggcggag cagctgcaag ggacaagcgc gcttggaagg
     1561 gcaatgcctg acattgcgcg cttcctacag atgatgtccg tgcagggggt acctggagtg
     1621 ccaggcatca cgccaggcgc tgggcagcct cctatggccg gcggcgggcc tcctggcggg
     1681 ccttccggcg cccgaccagg tccgcttatg ccgccgggcc cgcaatatgc tcaagggccg
     1741 ccggtcaatc caaataatcc tgacctcgat cctgggaatc agttaccacc tatccccatg
     1801 gctggcggca gccctcctgc accgccagtc ggccccggtg cacccccaag cccatccccc
     1861 gtaggaccac cggggccacc cgctcgtccg cagatgcca
//
LOCUS       DASQCV010000125         7183 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1683260, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000125 DASQCV010000000
VERSION     DASQCV010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 7183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7183
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1683260"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..607
                     /locus_tag="VEQ16_01845"
     CDS             62..607
                     /locus_tag="VEQ16_01845"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011387781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004602 - glutathione peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HYP62597.1"
                     /translation="MTTAISDIPLKTITGEPAKLGDYEGKVLLVVNVASKCGLTPQYE
                     GLQKLYDEKKDAGLEILGFPANDFRGQEPGTNEEIASFCSTNYNVSFPLFSKIEVTGE
                     HIHPLYSALIAAQPEAAGGSAFRDRLTGFGMTPNPAPGILWNFEKFVVGRDGQVIGRF
                     TPDTTADDPNLRAALDKALTA"
     gene            complement(1091..1825)
                     /locus_tag="VEQ16_01850"
     CDS             complement(1091..1825)
                     /locus_tag="VEQ16_01850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62598.1"
                     /translation="MRQMEPPRLVWCLGMYASGSTWLFNAARAVAALLYPEERVAGHF
                     AENMKKLKTLPAALNVVKTHDLGPTATGFLRKRAGPILVSVRDPRDAVTSMMQHMGHG
                     FWQALQYVEASAQSAARLAGDGRACLFVYESGFTETADVFDQLAAALGGTLTMAQREG
                     LYAATRREKIEEKISQLAALPTAWHNPVTDDLLDLDTQWHRHHAGRSGEVGRWRHRLP
                     AQEAALIERRMTSFMRQFGYEGETSH"
     gene            1864..2766
                     /locus_tag="VEQ16_01855"
     CDS             1864..2766
                     /locus_tag="VEQ16_01855"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YicC/YloC family endoribonuclease"
                     /protein_id="HYP62599.1"
                     /translation="MKTENVLASMTGFARAQGESGNASFIWELRSVNGRGLDVKLRLP
                     SGLDVLELPLRDLAAKAFKRGNISGTLSIRRDSVANVAVDPVALERAKSLALELAGSI
                     PGAPAPRAELLLALPGVMRGAQAQEESEEERAALVDAVRAGFVQALEGLAASRAAEGQ
                     KLAAIAGANLQEIFLLREAASLEAAKQPELHRARLAAQLAELIGGTPNLPEERIAQEI
                     ALLATKSDVREELDRLAAHIEAARALLAEGVAVGRKLDFLMQEFNREANTLCSKSASV
                     PLTNIGLALKAAIEQLREQVQNIE"
     gene            2759..3340
                     /gene="gmk"
                     /locus_tag="VEQ16_01860"
     CDS             2759..3340
                     /gene="gmk"
                     /locus_tag="VEQ16_01860"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007434671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HYP62600.1"
                     /translation="MSRRGLCLVLAAPSGAGKTTISRALLEQDDQLALSVSVTTRERR
                     LGEKEGKHYFFITQERFDEMVERDELLEYARVFGRSYGTPRAPVVEALMGGQDVMFDI
                     DWQGFRQIRAALGRDVVGVFIKPPSLEVLHNRLIKRGDTPEQVEHRMRHADAEISHAG
                     EFDYIVENHDLDVALADIRAILRASRLASFRQG"
     gene            complement(3361..3615)
                     /locus_tag="VEQ16_01865"
     CDS             complement(3361..3615)
                     /locus_tag="VEQ16_01865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62601.1"
                     /translation="MRSFRKVRWKLLGMGVACTLMGAAIGGGTAMAYQGHMWNALSDL
                     QAAQNQLSLAVADKGGHRENAINLISQAIGEVKAGIAYAQ"
     gene            3846..6563
                     /gene="gyrA"
                     /locus_tag="VEQ16_01870"
     CDS             3846..6563
                     /gene="gyrA"
                     /locus_tag="VEQ16_01870"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012226218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006259 - DNA metabolic process [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HYP62602.1"
                     /translation="MSDTTDEPGAELPPPRGQEPVSIEQEMRKSYLDYAMSVIVSRAL
                     PDARDGLKPVHRRILYAMHEAGNTPDKPYRKSARMTGDVMGTYHPHGDSAIYLAAVRM
                     AQEFSMRLPLIDGQGNFGSIDGDMPAAMRYTEMRLAPSAMLLLADIDRDTVDFQPNYD
                     ESEQEPKVLPAAFPNLLINGSNGIAVGMATNIPPHNPTEIMNAVLAMIAEPDISLEAL
                     MKIVPGPDFPTAGIILGRSGIRNAFETGRGSITLRARATVETIRKDREAIIVTEIPYQ
                     INKATLLERIAELVRAKEIEGIADLRDESDREGMRIVIELKRDATGEVVLNQLYRMTN
                     LQTSFGINMLALDKGKPRQMGLRELLQLFIEFREEVILRRARFDLSKARDRAHLLVGL
                     GIAVANIDEVIRIIRNSPDSNTARQALMEREWPAENVLPLLALIEDEGNVVSAQNTIH
                     LTDAQARGILELRLARLTGLEREKIQAELAEVSEKIKEFLEIIGSRIRRLEVMRDEIV
                     AAHEKIASARKSSIEDVDADLDDESLIEPGQMVVTITRDGFIKRTPLEVFRVQNRGGR
                     GRAAASTRGDDIVTRSFNAHTHQFVLFFSSGGKVFREKVWRLPEGGATGKGRALVNLL
                     PELGSDQVTTVLPLPQDEDLWENLHLVFATSSGNVRRNRLADFKNVRASGLLAMKLDE
                     GDHLIGVSTCREGDDVFLATKRGRCIRFQITDETLRVFSGRDSTGVRGIRLADGDEVM
                     SLSVLRHVEASVEERAAFLKQRRTEDDAETGGGDEEQAAEVTLSEARITELQEAEEIL
                     LTVTDSGFGKRSSAYEYRVTGRGGQGIANLTLNPKRNGNAVAASFAVRLGDDIMLVTD
                     GGRLIRVPVDQIRLTGRAAMGVTLFRLDDDERVTSVFPVLEQEQESEDG"
     gene            6556..7062
                     /gene="coaD"
                     /locus_tag="VEQ16_01875"
     CDS             6556..7062
                     /gene="coaD"
                     /locus_tag="VEQ16_01875"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HYP62603.1"
                     /translation="MAERIALYPGTFDPITNGHIDIIARAARLVDRLVIGVAVNTGKG
                     PIFSLEERVSLVEAEIRPIAEKTGISVDVRPFSSLLIQFAREVGAQMIFRGLRAVSDF
                     DYEFQMTGMNYRLDPGIETVFLMASEHHQFISSRFVKDVAAFGGDISTFVPKLTAETT
                     LAKLKGDA"
BASE COUNT         1343 a         2081 c         2342 g         1417 t
ORIGIN      
        1 aattgacctt ggtcagcgcc ggcggcaatc tcagcccata aaacaactgg ggaatgcgag
       61 catgaccact gcgatttcgg atattccgct gaaaaccatc acgggcgagc ctgccaagct
      121 tggcgattac gagggcaagg tgctgctggt ggtgaatgtc gcctccaaat gcggcctgac
      181 gccgcaatat gaggggctgc agaagctcta tgatgagaag aaggacgccg gcctcgaaat
      241 tctcggcttt ccagccaatg atttccgcgg ccaggagccg ggtacgaatg aggaaatcgc
      301 cagcttctgc agcaccaatt acaacgtgtc cttcccgctt ttctcgaaga tcgaggtgac
      361 gggcgagcat atccacccgc tttattccgc gctgatcgca gcacagcctg aggcggcggg
      421 aggcagcgcg ttccgcgacc gcctgactgg gtttggcatg acaccaaatc ccgcgccggg
      481 gattttgtgg aatttcgaga aattcgtcgt cggccgtgat ggccaggtaa tcggccgttt
      541 cacgccggac accacggcgg acgacccgaa cctgcgtgct gcgctcgaca aggcgctgac
      601 cgcctgaatc gagccgcctg aatcgaaagg gcgccccgcg gggcgccctt tttgttgtta
      661 taatttttat cagtgacagg tttggggttg gtctggcaga gcggccggtt tgccttgctc
      721 ttcgggaagt agcgggaagg aataggtctt aagtctattc acccattccg tgccgctttc
      781 accgtttcca gaggcgactt cagacctgtg aaaacggggt acggcccaga gggtcactcc
      841 gtgtaggttt ttggtcggca tcattctgaa cctattagtt gtggccgcgt cttacagcaa
      901 gacgcgaagt gctgctagag caagcggctt tgtggttggt taaaaatacg aaaggtaaga
      961 gataattttc tttaagtgac gattttatga tgtttccaag aaaatttttt gtgcgttgcg
     1021 gcatgttcat ggagtcttaa cactcttggg ggtgtcctga cccagactat gggaaacaac
     1081 ccaaggctgt ctagtgggat gtttcacctt catagccgaa ttgccgcata aagcttgtca
     1141 tacggcgctc tatcagtgcg gcctcctgtg cgggcagcct gtggcgccag cgccccacct
     1201 cgccgctacg cccggcatgg tggcggtgcc attgggtgtc gaggtccagc agatcgtccg
     1261 tgacagggtt gtgccaggcg gtgggcaggg ccgccagttg agaaattttt tcctcgatct
     1321 tctcccgcct agtggcggcg tacagaccct cccgctgcgc catggtcagt gtgccgccca
     1381 gggcggcggc gagctggtcg aaaacatctg ctgtctcggt gaaaccggat tcatagacga
     1441 acaggcaagc ccgcccgtcg ccggcgaggc gtgccgcgct ttgcgccgag gcttcgacat
     1501 attgcagcgc ctgccagaag ccatgcccca tatgctgcat catcgaggtg acggcgtcgc
     1561 gcgggtcgcg caccgagacg aggatcggcc cggcgcgctt gcgcagaaag ccggtggcgg
     1621 tggggccgag atcatgcgtc ttcaccacat tcagcgccgc gggcagggtt ttcagcttct
     1681 tcatgttctc ggcgaaatgc ccggccacgc gctcctcggg gtagagcaag gcggccaccg
     1741 cccgggcggc gttgaacagc caggtcgagc cgctagcata cattcccagg caccagacca
     1801 ggcgcggcgg ctccatctgc ctcatatcgc cagattatca gcctcctgct aagaggctag
     1861 cccatgaaaa ctgagaatgt actagcctcg atgacaggat ttgcccgcgc gcagggtgag
     1921 tccggcaatg ccagtttcat ctgggaattg cgcagcgtga atggccgtgg attggacgtg
     1981 aaattgcgcc tgccatccgg gctggacgtg ctggaattgc cgctccgcga cctcgcggcg
     2041 aaggcgttca agcgcggcaa tatctccggc accctgtcca tccggcgcga ctccgtggcc
     2101 aatgtggcgg tggacccggt ggcgctggag cgggccaaga gcctcgcgct ggaactggcc
     2161 ggatcgattc cgggggcgcc cgcgccgcgc gcggaattgc tgctggcgct gcccggtgtg
     2221 atgcgcgggg cgcaagcgca ggaggagagc gaggaggagc gcgccgcttt ggttgatgct
     2281 gtacgggccg gtttcgtgca ggcgctggag gggcttgccg cctcgcgcgc cgcggaaggg
     2341 cagaagctcg ccgccattgc cggggccaat ctgcaggaga tttttctgct ccgcgaagcc
     2401 gcttcgctgg aagcggcgaa gcagccggag ttgcatcgcg cccgcctggc ggcgcagctg
     2461 gcggagctga tcggcggcac gccgaatctg ccggaagaga ggatcgcgca ggagatcgct
     2521 ctgctcgcga ccaagtcgga cgtgagagag gagctggacc ggctcgccgc ccatattgaa
     2581 gcagcgcggg ccttgctggc ggaaggcgtg gcggtgggac ggaaactcga tttcctgatg
     2641 caggaattca accgcgaggc caacacgcta tgcagcaagt cggcctccgt gccgcttacc
     2701 aatattgggc tggcgctgaa ggccgccatc gagcagctgc gcgaacaggt gcaaaacatt
     2761 gagtaggcgc gggctctgcc tggtgctggc cgcgccatcg ggtgcgggca agaccacgat
     2821 ctcgcgcgcg ctgctggagc aggatgacca gctcgccctt tcggtgagtg tgacgacgcg
     2881 cgagcgccgg ctgggggaga aggaaggaaa acattacttc ttcattaccc aagagcggtt
     2941 tgacgaaatg gtggagcgcg acgagttgct ggaatatgcc cgcgtgttcg gccgctctta
     3001 cggcacgccg cgcgccccgg tggtggaggc gctgatgggc gggcaggatg tgatgttcga
     3061 cattgactgg cagggcttcc gccagatccg tgccgctttg gggcgggatg tggtgggcgt
     3121 gttcatcaaa ccgccctcgc tggaagtgct gcataaccgg ctcatcaaac gcggcgatac
     3181 gccggaacag gtggagcacc gcatgcggca tgcggacgcg gaaatttccc atgccgggga
     3241 gtttgattat atcgtggaaa atcacgatct ggacgtggct ttggccgata tcagggccat
     3301 tctgcgcgcc agccggctcg ccagcttccg ccaaggctga ccggcgcgca ggcgccgttc
     3361 ttactgcgcg taggcgatgc cggctttcac ttcgccgatg gcttgggaga tcaggtttat
     3421 cgcgttctcg cgatggccgc ctttatccgc caccgccagg gagagctggt tctgcgctgc
     3481 ctgcaggtcg ctcaacgcat tccacatatg cccctgatag gccatggcgg tgccgccgcc
     3541 gatggccgcc cccatgaggg tgcaggccac acccattccc aacaacttcc aacgcacttt
     3601 cctgaatgaa cgcatgataa gtctcctctg aattgtttgg ctggactgtc tcaggctgcg
     3661 gccgtccgcc gcgacgttag agtgccgata cattgcggca tcaacatggc acggtggatt
     3721 tgtcagcccg tccgcgccat gctataaagc gcctgcaatg cagtataatt tttccaattt
     3781 tttgaatggg ttgtgtgttg gcgcgggggg cggttccgtg gccgcccgcg agtctctgaa
     3841 ctgacatgag cgatacgacc gacgagcccg gcgcggagct cccgccgccg cgtggccagg
     3901 agcctgtttc catcgagcag gagatgcgca agtcctattt ggactatgcc atgtccgtca
     3961 ttgtcagccg cgctttgccc gatgcgcggg acgggctgaa gcccgttcat cgccgcattc
     4021 tttacgccat gcacgaggcg ggcaacacgc ccgacaagcc ctaccgcaaa tccgcgcgca
     4081 tgaccggtga tgtgatgggt acctaccatc cgcatggcga cagcgcgatt tatctcgccg
     4141 ccgtgcgtat ggcgcaggaa ttctccatgc gcctgccgct tatcgacggg caggggaatt
     4201 ttggctccat cgacggcgat atgccggcgg ccatgcgcta taccgagatg cgcttagcac
     4261 cttcggcgat gctgctgctt gccgatatcg accgcgatac ggtcgatttc cagccgaact
     4321 atgatgagag cgagcaggag ccgaaggttc tgcctgccgc gttcccgaac ctgctcatca
     4381 acggctccaa cggcatcgcc gtgggcatgg cgacgaatat tccgccgcat aatcccacgg
     4441 aaatcatgaa tgcggtgctg gcgatgatcg ccgagccgga tatctcgctt gaggcgctga
     4501 tgaagatcgt gccggggccg gattttccga ccgcaggcat cattcttggc cgttccggca
     4561 ttcgtaacgc gttcgagacg gggcgtggct ccatcacgct gcgcgcgcgc gcgacggtag
     4621 agaccatccg caaggaccgc gaagccatca tcgttacgga aattccgtac cagatcaaca
     4681 aggccacgct gctggagcgc atcgccgagc tggtgcgggc caaggagatc gagggcattg
     4741 ccgatctgcg cgatgagtcc gaccgtgagg gcatgcgcat tgtcatcgag ctgaagcgcg
     4801 atgcgacggg cgaggtggtg ctgaaccagc tctaccgcat gaccaatttg cagaccagtt
     4861 tcggcatcaa tatgctggcg ctggacaagg gcaagccgcg gcagatgggc ttgcgggaat
     4921 tgctgcagct tttcatcgaa ttccgcgagg aggtgatcct ccgccgtgcg cgcttcgacc
     4981 tctcgaaagc gcgcgatagg gcgcatctgc tggtcgggct cggcatcgcg gttgccaata
     5041 tcgatgaagt gatcaggatt atccgcaaca gcccggattc caacacggcg cgccaggcgc
     5101 tgatggagcg ggaatggccg gcggagaatg tgctgccgct gctggcgctc atcgaggatg
     5161 agggcaatgt ggtttcggcg cagaatacca tccatctgac cgatgcgcag gcgcgcggga
     5221 ttctggagct gcgtttggcc cgcctcaccg ggttggagcg cgagaaaatc caggccgaac
     5281 tcgccgaggt ttccgagaag atcaaggaat tccttgagat catcggttcg cgcatccgcc
     5341 gtttggaggt gatgcgggat gaaatcgtcg cggcgcatga gaagattgcg agcgcgcgca
     5401 aatccagcat cgaggatgtg gatgcggatc tcgatgatga aagcctgata gagccggggc
     5461 agatggtcgt caccatcacg cgcgacggtt tcatcaagcg cacgccgctg gaggtgttcc
     5521 gcgtgcagaa ccgtggcggg cgcgggcgcg cggcggcttc cacgcgcggt gatgatattg
     5581 tcacgcgcag tttcaatgcg catacgcatc agttcgtgct gttcttctcg tcgggcggga
     5641 aagtgttccg cgagaaagtc tggcgcctgc cggaaggcgg ggcgacgggc aagggcaggg
     5701 cgctggtcaa cctgctgccg gagctgggct cggatcaggt gaccaccgtg ctgccgctgc
     5761 cgcaggatga ggatttgtgg gagaatctgc atctggtgtt cgccacctcc tcgggcaatg
     5821 tgcgccgcaa ccggctggcg gatttcaaga atgtccgcgc ctccgggctg ctcgcgatga
     5881 agcttgatga gggcgatcat ctcattggcg tgtccacctg ccgcgagggt gatgatgtgt
     5941 tcctcgccac caagcgcggg cgctgcatcc gcttccagat cacggacgag acgctgcgtg
     6001 tgttctcggg ccgggattcc accggcgtgc gcggcatcag gctggcggat ggcgatgagg
     6061 taatgagcct ttcggtgttg cgccatgtcg aagccagcgt tgaagagcgc gctgccttcc
     6121 tgaaacagcg ccgcaccgag gatgatgccg aaactggcgg cggcgacgag gagcaggccg
     6181 ccgaggtcac gctgagcgag gcgcggatta ccgagttgca ggaggcggag gagattctgc
     6241 tcaccgtcac cgattccggc ttcggcaagc gcagctcggc ttatgaatat cgcgtcactg
     6301 gccgcggcgg ccagggtatt gccaacctca cgctgaatcc caagcgcaat ggcaatgcgg
     6361 tggctgcaag cttcgccgtg cggctgggcg atgacatcat gctcgtcacc gatggcgggc
     6421 ggctgatccg cgtgccggtg gaccagatcc gccttaccgg acgcgccgcc atgggcgtca
     6481 ccttgttccg gttggacgat gatgagcgtg tcaccagtgt gttccccgtg ctggagcaag
     6541 agcaggagtc cgaagatggc tgaacgcatc gccctttacc ccggtacttt cgatcccatc
     6601 accaatggcc atatcgacat catcgcgcgt gccgcgcggc tggtggacag gctggtcatc
     6661 ggcgtggcgg tgaatacggg gaaggggccg atcttcagcc tcgaggagcg tgtgtctctg
     6721 gtggaggcgg aaatccgtcc catcgccgaa aagaccggca tcagcgttga tgtgcggcct
     6781 ttctcatcgc tgctcatcca gttcgcgcgc gaagtgggag cgcagatgat cttccgcggc
     6841 ctgcgcgctg tgtccgattt cgactatgaa ttccagatga cgggaatgaa ttaccggctt
     6901 gatccgggaa tcgaaaccgt gttcctgatg gccagcgagc atcaccagtt catctcctcg
     6961 cgcttcgtga aggatgttgc cgcatttggc ggggacattt ccactttcgt gccgaagctg
     7021 acggccgaga ccactttggc caaattgaaa ggtgacgcct gatctcaagg cgccaccgcc
     7081 caccctcgtc tatggaggtt ccatgagcga agcacagacc gacacgcccg tttccaacac
     7141 gctgaagatg acgctgaaaa atggtgaggt caccattcag ctg
//
LOCUS       DASQCV010000126         1600 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1848606, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000126 DASQCV010000000
VERSION     DASQCV010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1848606"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..243
                     /locus_tag="VEQ16_01880"
     CDS             <1..243
                     /locus_tag="VEQ16_01880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62604.1"
                     /translation="AHFSRVDTLLQDQPVFEWRARELTEALAVLAAGSILRAHAPTAV
                     ADAFIATRLSSHTRHTYGQGLAGADARAIVDRAFPH"
     gene            359..664
                     /locus_tag="VEQ16_01885"
     CDS             359..664
                     /locus_tag="VEQ16_01885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012227644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ETC complex I subunit"
                     /protein_id="HYP62605.1"
                     /translation="MVARIYKPAQTAMQSGPARTKEWVLEYEPETPREIDPLMGWTSS
                     RDMRSQISLSFDTKEEAMAYAERNGIPYQVMQPTPRRPVRKSYADNFRFGRRGSWTH"
     gene            complement(727..1341)
                     /locus_tag="VEQ16_01890"
     CDS             complement(727..1341)
                     /locus_tag="VEQ16_01890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007438540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2585 family protein"
                     /protein_id="HYP62606.1"
                     /translation="MAHDSSTTLGRPGVAIPRLSLPAALLISLGLIAIAAGIEHAMGR
                     LLFCKCGTFKLWYGGRGDSQMSQHLTDWYSYSHVVHGIVFYWLLSIAARGRLSVAARL
                     VIATGLEVSWEIFENTSFIINRYRAQTISRGYFGDSIVNSVGDMLSMLVGFLLAARLP
                     AWVTVFLLIAAEVLLLALIRDNLTLNVVMLIHPVEWIKEWQLGG"
BASE COUNT          306 a          513 c          506 g          275 t
ORIGIN      
        1 gcgcatttct cgcgggtcga cacgctgctg caggaccagc ccgtgttcga atggcgcgcc
       61 cgcgagttga ccgaggcgct cgccgtgctt gcggccggca gcatcctgcg cgcccatgcg
      121 cccaccgccg tggcggacgc cttcatcgct acgcggttgt ccagccacac ccggcacacc
      181 tacggccagg ggcttgccgg ggcggacgca cgcgccatcg tcgatcgcgc gtttccccac
      241 tgaggcttgt ccgcgcatgt ctcaagctcg ctgcggacaa ttggcctgac atgggttagg
      301 ttttctgcct ctggatgctt ctgacaacac cggtgcactg gcgccaagga tcaacgcaat
      361 ggtcgcgcgc atctacaagc ctgcccagac cgccatgcag tcgggcccag cccgcaccaa
      421 ggaatgggtg ctcgaatacg aaccggagac cccgcgcgag atcgatccgc tgatgggctg
      481 gaccagctcc cgcgacatga gatcacaaat cagcctctcc ttcgatacca aggaggaggc
      541 catggcttac gccgagcgca acggcatccc ctatcaggtc atgcagccca cgccacggcg
      601 cccggtgcgc aagtcctacg ccgacaactt tcgctttggc cgcaggggct cctggacgca
      661 ctgatgggct gccgagcggg cgcatcccac gatttgctcg gacccgtggc gccatatgtg
      721 gccagctcat ccacccagct gccactcttt gatccactcc accggatgga tcagcatgac
      781 cacattgagg gtgaggttgt cgcggatgag ggcaagcagg agtacttcgg cggcgatcaa
      841 caggaacacc gtcacccagg cgggcaagcg cgcggcgagc aggaagccca ccagcatgct
      901 cagcatgtca cccaccgaat tgacgatgct atcgccaaag tagccgcgtg agatcgtttg
      961 ggcgcggtaa cggttgatga tgaaggaggt gttctcaaaa atctcccagc taacctccag
     1021 gccggtggcg atgaccagcc gcgccgcaac cgagagccgg cctcgcgccg cgatcgacaa
     1081 gagccagtag aagacgatcc catgaaccac atggctgtag ctgtaccagt cggtcaaatg
     1141 ttggctcatc tgcgaatcgc cgcgaccgcc gtaccaaagc ttgaaggtcc cgcatttgca
     1201 gaagagaagg cggcccatgg cgtgctcgat gccggcggca atggcgatga gcccgaggct
     1261 gatcagcagg gccgcaggaa gggacaggcg cgggatggca actccgggtc gcccgagggt
     1321 ggtggagctg tcgtgggcca tggagggggg gtacgctggg agagcccgat aggggcggag
     1381 cggcgcggca ttttcaaggc atttggcgtg cgcgctggcg gcaatacact gtcacgtatg
     1441 ccgaaaattt gacccgcggc cacattttgc catagctggc gcatccgata gcgctttgaa
     1501 acatggaatc ggtccaatgc ggtggctcct cccctttgcc ctgatgggat tggcccagct
     1561 ttcgcttgcg tcggcggctg ctgcctcctc ctgcgccaga
//
LOCUS       DASQCV010000127         1704 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_25468, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000127 DASQCV010000000
VERSION     DASQCV010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25468"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..182)
                     /locus_tag="VEQ16_01895"
     CDS             complement(<1..182)
                     /locus_tag="VEQ16_01895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase"
                     /protein_id="HYP62607.1"
                     /translation="MVWKTAIRHIVTRAAPALPANPAQVKELRARLEAAGTRKLGRTL
                     AIRHVAAGSCNGCELEL"
     gene            complement(185..1054)
                     /locus_tag="VEQ16_01900"
     CDS             complement(185..1054)
                     /locus_tag="VEQ16_01900"
                     /inference="COORDINATES: protein motif:HMM:NF012566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62608.1"
                     /translation="MAHSLAFAQAAETALGQTPPSRAILLRAIMGELERLANHTSDIG
                     AVAGDAGFAFLDARFALAREEICAACGAAFGHRLMMDIVVPGGVAGDILPGGAEVILA
                     TLAALEAELPSLTRVFEDYASLQDRVIGTGIIPPSLAEAYQAGGYVGRASGQAHDARL
                     SPGYPPYLDTPFHMPVLQEGDVAARVRVRLEEIPESIRLVRDMLSALPDGPLALTLPQ
                     ESGMGLGVAESFRGPVWHWLSIEGGAIVAAFIADASALHWPLLEHAATTAILADFPMI
                     NKSVNGSYSGVDL"
     gene            complement(1067..1549)
                     /locus_tag="VEQ16_01905"
     CDS             complement(1067..1549)
                     /locus_tag="VEQ16_01905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62609.1"
                     /translation="MLLSAEDWVAHQGKFIALWTDAHYAYALYQPQELVAVALENGGY
                     PALPHKGAGWYQRLAYDLNGHKSMGAKDIRPAVDHHRAADFTAPWPDFAAPEGEGVHQ
                     VAVGPIHAGIIEPGHFRFSVRGEAVLRLEARLGYAHKGTLGLMRGKSPRLAARFAARV
                     "
BASE COUNT          332 a          610 c          519 g          243 t
ORIGIN      
        1 agctccagct cgcagccatt gcagctcccc gccgccacat ggcggatagc gagtgtccgg
       61 cccagttttc tggtcccggc cgcctccagc cgggcgcgca gctccttcac ctgcgccggg
      121 ttggcgggca gggccggcgc ggccctggtg acgatgtggc ggatggcggt tttccaaacc
      181 atagctacag atccaccccc gaataggagc cattgaccga tttattgatc atcgggaaat
      241 cggccaggat ggcggtggtg gccgcatgct ccagcagcgg ccagtgcaaa gccgaagcat
      301 cggcgatgaa ggcagcaaca atggccccgc cctcgatgga aagccaatgc cagaccggcc
      361 cgcggaagct ctccgccacg ccaagcccca tgccgctctc ctgcggcaag gtgagcgcca
      421 gcggtccatc gggcagcgcg ctcagcatgt cgcgcacaag gcggatgctt tcgggaattt
      481 cctccagccg cacacggacg cgcgccgcca catcgccctc ctgcagcacc ggcatatgga
      541 aaggcgtgtc gagataaggc gggtagccgg gcgagagcct ggcatcatgc gcctgaccgg
      601 aggcccggcc aacatagccg ccggcctggt acgcctcagc cagagacggc ggaatgatgc
      661 cggtgccgat caccctgtcc tgcaggctgg cataatcctc gaacacccgc gtcaggcttg
      721 gcaattccgc ctccagcgcc gccagagttg ccaatatcac ctccgccccg ccgggcagaa
      781 tatcccccgc cacgccgccg ggcaccacga tatccatcat cagcctgtgc ccgaaagcgg
      841 caccacaggc ggcgcaaatc tcttcgcgcg ccaaggcgaa gcgggcatcg agaaaggcga
      901 atcccgcatc cccggcaacg gcgccgatat cggatgtatg gttcgccagc cgctccagct
      961 ctcccatgat ggcgcgcagc agaatggcgc gagagggcgg ggtttgcccc aaggccgtct
     1021 ccgccgcctg ggcaaaggcg aggctatgcg ccaccgtggc atcgccctac acacgcgcgg
     1081 caaaacgggc cgcaagccgc ggcgatttgc cgcgcatcag ccccagcgtg cccttatgcg
     1141 catagcccag ccgcgcctcc agccgcagca ccgcctcgcc gcgcaccgaa aagcggaaat
     1201 ggccgggctc gatgatcccg gcatggatcg gccccaccgc gacctgatgc acaccctcgc
     1261 cctcgggcgc tgcgaaatca ggccagggtg ctgtgaaatc ggcggcgcgg tgatgatcga
     1321 cagccgggcg gatatccttg gcgcccatcg acttatggcc attcaaatca tacgccaaac
     1381 gctgatacca gccggcgcct ttatgcggca aagcagggta gccgccattc tccaacgcca
     1441 ccgccaccag ctcctgcggc tggtacaagg cataggcata atgcgcatcg gtccagagcg
     1501 cgatgaactt gccctgatgc gccacccaat cctctgccga gagcagcatc attgcagcgc
     1561 ccccgccaca ttggagagca gcgcgagaat cggccccggc atggcgaagg cgagccccac
     1621 cgcgagcgcc agatgcagcg ccaccagatg catttccgcg cccgccttct gcggcctggt
     1681 atgcggcggc ggggaaccaa aaat
//
LOCUS       DASQCV010000128         1998 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1185655, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000128 DASQCV010000000
VERSION     DASQCV010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1185655"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..493
                     /locus_tag="VEQ16_01910"
     CDS             47..493
                     /locus_tag="VEQ16_01910"
                     /inference="COORDINATES: protein motif:HMM:NF019017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1489 domain-containing protein"
                     /protein_id="HYP62610.1"
                     /translation="MDRTRPPQQPRVHLIKLAVGVRDVAHLQAIQKARAETSPPLRHL
                     TRNFPKRAAELLESGSIYWVIGGIISVRQRLADITRDKETDGTPITALVLDPKLVLVE
                     PRPMRAFQGWRYLEPKDAPPDLGAAGTGSAEMPEEMRRQLAALGLL"
     gene            575..1531
                     /gene="fabD"
                     /locus_tag="VEQ16_01915"
     CDS             575..1531
                     /gene="fabD"
                     /locus_tag="VEQ16_01915"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HYP62611.1"
                     /translation="MAVHAFIFPGQGSQAVGMGRDLAAAFAPARHVFEEVDEILKQKL
                     TKLMFEGPADELTLTENAQPALMAVSLATLRVLQAEGGISLKEKVALVAGHSLGEYSA
                     LAAADAFSIADTAKLLKLRGQAMQKAVPAGQGAMAALLGAEMALAQEICAEAEEGPNG
                     REVIGCANDNGGGQVVISGHKAAVERAIEIAKTKGVKRAMLLPVSAPFHCALMAPAAD
                     AMAEAFANMPPHAPVVPVVANVTAQKVTDPSQIRDLLVQQVTATVRWRESVQEMAALG
                     VDSFIELGSGKVLAGLVKRIAPDATAISAGSPADIEALLKVL"
     gene            1532..>1998
                     /locus_tag="VEQ16_01920"
     CDS             1532..>1998
                     /locus_tag="VEQ16_01920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002728308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP62612.1"
                     /translation="MFDLTGKTALVTGASGGIGAEIARALHRQGAVVALSGTRREALD
                     SLAAELGERVHVLPADLAVAEEATRLIADAEAAMGKVDILVNNAGLTKDGLVLRMSDA
                     DWDKVLNVDLGAPFRLTKAVLKFMLRRRAGRIINIGSIVGATGNPGQANYCAA"
BASE COUNT          351 a          647 c          661 g          339 t
ORIGIN      
        1 ggatctccaa gaacgctttg gtcgacaagg ccaagaactg attggcatgg atcgcacgcg
       61 gccgccccaa cagccccgcg tgcatcttat aaaattagcc gtaggtgtgc gcgacgtcgc
      121 gcacctgcag gccatccaga aagcaagggc ggagacatct ccgcccttgc gtcatttgac
      181 gcgcaatttt cccaagcgcg cggcggagct gctggaaagc ggctccatct actgggtcat
      241 tggcggcatc atctcggtcc gccagcgcct cgcggatatt acccgggaca aagaaaccga
      301 cggcacgccc atcacggccc tggtgctgga cccgaagctg gtcctggtcg agccccgccc
      361 gatgcgcgct tttcagggct ggcgttatct ggagcccaag gacgcgcccc cggacctcgg
      421 tgccgctggc acaggcagcg cggagatgcc cgaggagatg cgccgccagc tcgccgcgct
      481 ggggcttctc tagccaggcc attcttgaca ggaattttgc gtctgcccgg tcccatgcta
      541 ctgcccggcg caaattcttg aggagaggca gctaatggcg gttcacgcct tcatattccc
      601 cggacaaggc agccaggccg ttggcatggg gcgcgacctc gccgccgcct tcgcgccggc
      661 gcggcatgtg ttcgaggaag tggacgaaat cctcaagcag aagctgacca agctgatgtt
      721 cgaaggcccg gctgacgagc tgaccctgac ggagaacgcg cagccggcgc tgatggccgt
      781 ctcgctcgcc acactccgcg tgctgcaggc ggaaggcggc ataagcctga aggagaaagt
      841 ggcgctggtg gccgggcata gcctgggcga gtacagcgcc ttggcggcgg cggatgcctt
      901 ttccatcgcc gatacggcga aattgctgaa actgcgcggc caggccatgc agaaggccgt
      961 gccggccggc cagggcgcca tggctgccct gctcggcgcc gaaatggcgc tggcccagga
     1021 gatttgcgcc gaagccgagg aaggcccgaa cgggcgcgag gtgattggct gcgccaatga
     1081 taatggcggc ggccaggtgg tgatttccgg ccataaggca gccgtggagc gcgccatcga
     1141 gattgccaag accaaggggg tgaagcgcgc catgctgctc ccggtttccg cgccgttcca
     1201 ttgcgcgctg atggccccgg ccgcggacgc catggccgag gccttcgcca acatgccgcc
     1261 ccatgccccg gttgtgccgg tggtggccaa tgtcacggca cagaaagtga ccgacccgtc
     1321 gcagatccgc gacctgctcg tgcaacaggt gaccgccacc gtgcgctggc gcgagagcgt
     1381 gcaggaaatg gccgcgctcg gcgtggatag ttttatcgag ctggggtcgg gcaaggtgct
     1441 ggccgggctg gtgaagcgca tcgccccgga tgccacggcg atttccgccg gctcccccgc
     1501 cgacatcgaa gctttgctga aggttctgta aatgtttgat ctgactggta aaaccgccct
     1561 cgtcaccggc gcctcggggg gcatcggcgc ggaaatcgcc cgcgctttgc accgtcaggg
     1621 cgctgtcgtc gccctctccg gcacccgccg cgaggcgctg gatagcctcg ccgccgagtt
     1681 gggtgaacgc gtgcatgtgc tgcccgccga cctcgccgtg gcggaggaag caacccgcct
     1741 catcgccgat gctgaagccg cgatgggtaa ggtggatatt ctcgtcaata atgccggcct
     1801 caccaaggac gggctcgtcc tgcgcatgtc ggacgccgat tgggacaagg ttctcaacgt
     1861 ggacctcggc gcgcccttcc gcctgaccaa ggctgtgctg aaattcatgc tccgccgcag
     1921 ggccgggcgc atcatcaata tcggctccat tgttggtgcc accggcaatc cgggccaggc
     1981 taattattgc gccgccaa
//
LOCUS       DASQCV010000129         2596 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2677975, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000129 DASQCV010000000
VERSION     DASQCV010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2596
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2677975"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VEQ16_01925"
     CDS             <1..196
                     /locus_tag="VEQ16_01925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62613.1"
                     /translation="FGPALLRDPEAVKEDVLDEYVSLHAAREKYGVVLTGSLEEYDLA
                     VDTAATAKLRQEMRGTMAAE"
     gene            294..2372
                     /locus_tag="VEQ16_01930"
     CDS             294..2372
                     /locus_tag="VEQ16_01930"
                     /inference="COORDINATES: protein motif:HMM:NF014071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HYP62614.1"
                     /translation="MGYRVGIDIGGTFTDFALLKNSHVIVHKNLSTPEDRSIGVMNGL
                     ETLAEKEGLPLADFLGQCDAIVHATTVADNTLIEMNGALTGLITTAGFRDEIEYRRGF
                     KEDIWDVRLLPPKQITPRRRRLTVAERVLFNGEVHQPLDEESVRAACRKLRKQGVESV
                     AVSLLFSFINPAHEKRIGEIIAEEIPGANISLSHQVLPRGPEYDRTSTTVVNAYIAPP
                     VTDYIERLASCLKKNGYARQLLVMQANGGVMTKEYIDGAPIRVLASGPVGGVVGSAYV
                     GSAKTHPNLLCVDLGGTSYDMSLVINGSAPAEAGWNMHHRYLIGVPMVKVETLGAGGG
                     SICHVQGGALKVGPASAGSVPGPICYGKGGTRPTVTDALVMLGILSPEENFAGGSFRL
                     HREGVAEAFQKIGDEMGYSAEDAAFDCWRIVNANMTQGVRRTVASQGSVEPRNLTMLA
                     YGGNGPAFAAVQADDLGITRVLVPKASPTFSALGTLVANPSIDEERSYVAKVNAIDTQ
                     RLKTLWTELAARAEKYFADASFKREDISATYQFNMRYAGQNFALTFDLHPNGALHDLS
                     FIDETIGERALALFNERHLAEYNHIREHELPEVIGVRLATHVVTPSPTVAMGFEAAAQ
                     EAKPAKTRRANLGQGFAETPIFYGADLKPGHLVTGPAIIHEVFTTIVVYPGWQARVDD
                     TGDYELIRLP"
     gene            2369..>2596
                     /locus_tag="VEQ16_01935"
     CDS             2369..>2596
                     /locus_tag="VEQ16_01935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62615.1"
                     /translation="MTPDWVRGDDTGLLLPAHMRALREGGVEFLTRAFRAIGTLGADN
                     SVTAITRFEECPGGSTGRKLFLSVAYEKPVPG"
BASE COUNT          493 a          859 c          762 g          482 t
ORIGIN      
        1 cttcggcccg gctttgttgc gtgacccaga agcggtgaag gaagacgtgc tcgatgaata
       61 tgtcagcctg cacgccgcgc gtgaaaaata tggcgtggtg ctcaccggca gcctcgaaga
      121 gtacgacctt gccgtcgata ccgcggcgac cgcaaagctg cgccaggaaa tgcgcgggac
      181 gatggccgcg gaataaacgg ctacaagtcg taatgatggt ccgtgccggc caggagtggc
      241 tggcccgtct cggctgacaa gaactggccg gcgctggcca agtggggagc aaaatgggtt
      301 atcgcgttgg tatcgatatt ggcggcacgt tcacggattt cgcgcttctc aaaaattcgc
      361 atgtcatcgt ccataagaat ctctccacgc cggaggatcg ctccatcggt gtgatgaatg
      421 ggctcgaaac actggccgaa aaggaagggc tgccgctcgc cgatttcctc ggccagtgcg
      481 atgccatcgt gcacgccacc accgtggcgg acaatacgct tatcgaaatg aacggcgcgc
      541 tcaccggcct catcaccacg gccggtttcc gtgacgaaat cgaatatcgc cgtggcttca
      601 aggaggatat ctgggatgtc cgcctgctgc cgcccaagca gatcaccccg cgccgccgcc
      661 gcctcaccgt tgccgagcgt gtgctgttca acggcgaggt gcatcagccc ctcgatgagg
      721 aatcagtccg cgccgcctgc cgcaaattgc gcaagcaggg tgtggaatcc gtcgccgtct
      781 ccctgctctt ttccttcatc aatccggcgc atgaaaaacg tatcggcgaa atcatcgctg
      841 aggaaatacc gggggcgaac atctcgctct cgcaccaggt actgccgcgc ggcccggaat
      901 atgatcggac cagcacgacg gtggtgaatg cctatatcgc cccgcccgtc accgactata
      961 tcgaacgttt agcctcctgc ctgaagaaaa acggctatgc ccgccagctt ttggtgatgc
     1021 aggccaatgg cggcgtgatg accaaggaat atatcgacgg tgcgcccatc cgcgtgctgg
     1081 cgtccggccc ggtcggcggc gtggtcggct cggcctatgt cggcagcgcc aaaacccacc
     1141 ccaacctgct ctgcgtcgat ctcggcggca cttcctacga catgtcgctc gtcatcaacg
     1201 ggtctgcgcc cgccgaagcc ggctggaaca tgcatcaccg ctatcttatc ggcgtgccga
     1261 tggtgaaggt ggaaacgctc ggcgcaggtg gcggctccat ctgccatgtg caaggtggcg
     1321 cgctgaaggt cggcccggct tctgctggct ccgtgccagg ccccatctgc tacggcaagg
     1381 gcggcacacg gccgacggtg accgacgcgc tggtgatgct cggcattctc tcgcctgagg
     1441 aaaatttcgc cggcggcagc ttccgcctgc accgcgaggg cgtggccgag gccttccaga
     1501 aaatcggcga tgaaatgggc tattccgccg aggacgccgc cttcgattgc tggcgcatcg
     1561 tcaatgccaa catgacccag ggcgtgcgcc gcacggtggc atcacagggc agcgtcgagc
     1621 cgcgcaacct caccatgctc gcctatggcg gcaacggccc tgccttcgcc gccgtgcagg
     1681 ccgatgatct cggcatcacc cgcgtgctgg taccgaaagc ctcgcctacc ttctccgccc
     1741 tcggtacgct ggtcgccaat cccagcatcg acgaggagcg ctcttatgtc gccaaggtca
     1801 atgccatcga cacacaacgc cttaaaacac tctggaccga gctcgccgcc cgcgccgaaa
     1861 aatattttgc cgacgcctcc ttcaagcgcg aggatatcag cgcgacctac cagttcaata
     1921 tgcgttatgc cgggcagaat tttgccctca ccttcgacct gcacccgaat ggcgcgttac
     1981 acgatctctc cttcatcgat gagacaatcg gcgaacgcgc gctggctttg ttcaatgaac
     2041 gccatctcgc cgagtacaac catatccgcg agcatgagct gccggaagtc atcggcgtgc
     2101 gcctcgccac ccatgtcgtc accccgtctc ccactgtcgc catgggcttc gaggccgcgg
     2161 cgcaggaggc gaaacccgcc aaaacccgcc gtgccaatct cggccagggt tttgccgaga
     2221 cgcccatttt ctacggcgcc gatctcaagc cgggccatct cgtcaccggc cccgccatca
     2281 tccatgaagt gttcaccacc atcgtcgtct atccgggctg gcaggcgcgg gtggatgata
     2341 cgggcgatta tgagctgatc cgcctgccat gactccggac tgggtgcggg gcgacgatac
     2401 cggcctcctg ctccccgccc atatgcgggc cttgcgggaa ggcggcgtgg agtttctcac
     2461 ccgcgccttc cgtgccattg gcacgctggg cgcggataac agcgtgaccg ccatcacccg
     2521 tttcgaggaa tgccccggcg gtagcaccgg ccgcaaattg ttcctctcgg tcgcttacga
     2581 aaaacccgta cccggc
//
LOCUS       DASQCV010000130         2513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_190916, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000130 DASQCV010000000
VERSION     DASQCV010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_190916"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..141
                     /locus_tag="VEQ16_01940"
     CDS             <1..141
                     /locus_tag="VEQ16_01940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006558267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid hydroxylase family protein"
                     /protein_id="HYP62616.1"
                     /translation="LGYDAEEARRYPWVMKLTGAPPRDKLAGAPPRDPAAARDSSQEA
                     LS"
     gene            138..1268
                     /locus_tag="VEQ16_01945"
     CDS             138..1268
                     /locus_tag="VEQ16_01945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dATP pyrophosphohydrolase"
                     /protein_id="HYP62617.1"
                     /translation="MSDIKIVHVDSKALLKRFIMLPERLHKDDPYYIAPLHMEREEAL
                     TAKNPFFGHAEVQFWLAVRDGRDVGRISAQIDQLALTIRPDAAGMFGMIAAENDAAIF
                     KALLDTAAEWLRARGKTRMEGPFNLNINEETGLLVEGFDSPPVVMMGHDKPYVAQLLE
                     EYGLVKEKDVYAYLYDITHELPKSVRRLLDRELPKEITVRQLDLKKLKEEIRNVTDIF
                     NDAWSGNWGFVPWTETEADYIAKALKPLLDPKLTSLVERNGEPVGFMIGLPNLNEAIR
                     DLQGKMLPFGWAKLLWRLKLSGVKTARVPLMGVRRAAAHDVIGGLLPFLMIDMVRKEA
                     LQKGFTHIELSWILEDNLPMRRMNESLGAKAYKTYRIYDKAI"
     gene            complement(1438..2352)
                     /locus_tag="VEQ16_01950"
     CDS             complement(1438..2352)
                     /locus_tag="VEQ16_01950"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYP62618.1"
                     /translation="MTPTVAITGATGFLGLHLVKTLAGEGANIRILARRNPAHEFWTG
                     LDFETIYGSLEQPETLAQLVRGADVVIHAAGLIKAPNLATFLQANRNGARAVAIAARL
                     HAPAAQFIHVSTLAAREPHISEYAFSKHAGEEAVRSVYMDAEEQLTVIRPPVLYGPWD
                     KATLVIFKAAALPFTPVLSHGRASVLHVTDAATALAQLALGDPQPGLFALPGGNYSHD
                     EIMIEAARAQGLSARLFRIPAPIVRTAGTISGLFGKAPIFTAGKARELLHPDWVVHPR
                     EALSYVPKIGIAEGFRETVAWYRSENWL"
BASE COUNT          514 a          640 c          885 g          474 t
ORIGIN      
        1 cttggctacg atgcggaaga agcgcgccgc tacccgtggg tgatgaaact gaccggcgcg
       61 ccgccacgcg ataaattagc tggcgcgccg ccgcgcgacc cggctgcggc acgtgattcc
      121 agccaggagg ccttgtcttg agcgatatta agattgtgca cgttgacagc aaggcgctgc
      181 tgaaacggtt cattatgctg cccgagcgtc tgcataagga tgacccctat tatatcgcgc
      241 cattgcatat ggagcgcgag gaggcgttga ccgcgaagaa cccgtttttc ggccatgccg
      301 aggtgcagtt ctggctggcg gtgcgcgatg ggcgcgatgt ggggcggatc agcgcgcaga
      361 tcgaccaact cgctttgacc atacggccgg atgcggcggg catgttcggg atgatcgcgg
      421 cggagaatga tgcggcgatt ttcaaggcgt tgctggatac ggcagcggaa tggctgcgcg
      481 cgcgcggcaa gacgcgcatg gaggggccat tcaacctcaa tatcaatgag gaaaccgggc
      541 tgctggtgga ggggttcgat agcccgccgg tggtgatgat ggggcatgac aagccttatg
      601 tcgcgcagct tctggaggaa tatgggctgg tgaaggagaa ggatgtctac gcctatctct
      661 acgacattac ccacgaactt ccgaaatcgg tgaggcggct gctggaccgg gaactgccga
      721 aggagattac cgtcaggcag ttggacttga agaagcttaa ggaagaaatc cgtaacgtta
      781 ccgatatttt caacgatgcc tggtccggca attgggggtt tgtgccctgg acggagacgg
      841 aggcggatta tatcgcgaag gcgctgaagc cgctgctgga cccgaagctg acgagcctcg
      901 tggagcgcaa cggcgagcct gtgggattca tgatcgggct gccgaatttg aacgaggcga
      961 tccgggattt gcagggcaag atgctgccct ttggctgggc caagctgcta tggcggctga
     1021 aactgtcagg cgtgaaaacg gcgcgcgtgc cgctgatggg agtaaggcgc gcggcggcgc
     1081 atgatgtgat tggcgggctg ctgccgtttt tgatgatcga catggtgcgg aaagaggcgc
     1141 tccagaaggg attcacgcat atcgaactct cttggatctt agaggataat ctgccgatgc
     1201 ggcggatgaa tgagagtctg ggggcgaaag cgtataagac gtatcggatt tatgataagg
     1261 ctatttgaag aatgcaccac tccgcgcgct cggaccgata gcgcgcgcta tgcagcctaa
     1321 aaaaattttt tgtaatctgg gtctgagttg gtggttccat gggaagccaa agcgccccat
     1381 ggagtcaaac gcttcaccgc cagtaatggg aggcggaggt acgaaacttc ttgctgccta
     1441 cagccaattt tcagaccggt accaagccac cgtttcccga aaaccctctg caatccctat
     1501 tttcggaacg tagctcagcg cctcgcgcgg atgcacaacc cagtcgggat gcagcaactc
     1561 cctggccttg ccggcggtga agatgggggc tttgccgaag aggccggaga ttgtgccagc
     1621 ggtacggaca atgggggccg ggatgcggaa caaacgcgcg ctgaggcctt gggcgcgggc
     1681 ggcttcgatc atgatctcgt catggctgta attgccaccg ggcagggcga agaggccggg
     1741 ttgagggtcg cccagggcaa gttgcgcaag tgcggtggcg gcgtcggtga cgtgaaggac
     1801 gctggcgcgg ccgtggctga gaacgggcgt gaaaggcaga gcggcagcct tgaagatgac
     1861 gagggtggct ttgtcccacg ggccataaag gacgggcggg cggatgacgg taagttgctc
     1921 ctcagcgtcc atatagacgg agcgcacggc ttcttcgccg gcatgtttag agaaggcata
     1981 ttcggaaata tgcggttcgc gcgcggcgag cgttgagaca tggatgaact gtgcggcggg
     2041 tgcgtgaagc cgcgcggcga tggccacggc acgggcgcca tttcggttgg cctgcaggaa
     2101 ggttgcgaga ttgggggcct tgatgaggcc ggcggcgtgg atcaccacat cggcgccccg
     2161 gaccaattgc gcgagggttt cgggctgctc gaggctgccg taaatcgttt cgaaatcgag
     2221 gcccgtccag aattcatggg cggggttgcg gcgggcgaga atgcggatat tggcaccctc
     2281 gcctgccagc gtctttacaa gatgcaggcc taaaaacccc gtcgccccgg tgatggcgac
     2341 ggtgggcgtc acgcggcccc ggcgatatca ggcgaggcgc cgaatgcacc gtcgagatac
     2401 atgtcgcggg cgcgcgagcg gctgagcttg ccggaggagg tctgcggcag gctgcgcggc
     2461 gggacgagca ccacgcacgt ttccaaaccg tgacggccac ggaagaattt ggc
//
LOCUS       DASQCV010000131         1585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1186201, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000131 DASQCV010000000
VERSION     DASQCV010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1186201"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1105)
                     /locus_tag="VEQ16_01955"
     CDS             complement(<1..1105)
                     /locus_tag="VEQ16_01955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007003058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HYP62619.1"
                     /translation="MDQIASPVPAAAHAPTHASAPALAKDDPARFINRELSWLDFNFR
                     VVGEAQNTRHPLLERLRFVSISASNLDEFYSVRVAGLIGQERAGVLEHSADGLTPAQQ
                     LIAINAQAKALVAAQQAAFVELRRLLAGAGLVICNSAELTSDDASFLDSYFMERVFPV
                     LTPLAVDPAHPFPFIPNMGLVMALTLARDDDRGHMSALIPLPAQIERFVRLPAGGDKI
                     RFIMLEELVAMNMGRLFPGFTVQGSGLFRVIRDTDVEFEEEAEDLVRSYESALKRRRR
                     GVAIALTVAADMPADLRELVIDAIEAPAEQVATETGIIGMADVKQLIVDDRPDLLFPP
                     YTARFPERIRDFGGDCFAAIRAKDILVHHPFESF"
     gene            complement(1158..>1585)
                     /locus_tag="VEQ16_01960"
     CDS             complement(1158..>1585)
                     /locus_tag="VEQ16_01960"
                     /inference="COORDINATES: protein motif:HMM:NF012529.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DnaA/Hda family protein"
                     /protein_id="HYP62620.1"
                     /translation="IALDDADIAPDPAALLHLLNMAAEAGQPVLMAARLPPARMAYKL
                     ADLTSRLRAASTVEIRPPEDELLAQLLTKLAAQHQLSLSIPVRNALLLHLPRAPAFYR
                     EAMARLDRAGLELTSEGRGARITRALALEIIAGLIKDEA"
BASE COUNT          292 a          463 c          587 g          243 t
ORIGIN      
        1 cgaaactttc gaacgggtga tgaacgagga tatccttcgc gcggatggcg gcgaaacaat
       61 cgccgccgaa atcgcggatg cgttcgggaa atcgcgcggt gtaggggggg aaaagcaggt
      121 ctggccggtc atcgacgatg agctgcttca cgtcggccat gccgataatg ccggtttcgg
      181 tagcaacctg ctcggcgggc gcctcgatgg cgtcgatgac cagctcgcgc agatcagccg
      241 gcatgtcggc agcgacggtg agggcgatgg cgacgccgcg gcggcggcgc tttaacgcgc
      301 tctcatagga acggacgaga tcttccgcct cttcctcgaa ttccacgtcc gtgtcgcgga
      361 tgacgcggaa caatcccgag ccctgcacgg tgaagccggg gaagagccgg cccatgttca
      421 tcgccaccag ctcttcgagc atgataaagc ggatcttgtc gccacccgcc ggcaggcgga
      481 cgaagcgctc gatctgggcc gggagcggga taagggccga catatggccg cggtcatcgt
      541 cgcgcgccaa agtgagggcc atgacaaggc ccatgttcgg gatgaagggg aaaggatgcg
      601 ccgggtccac cgccagcggc gtgaggacgg ggaagacgcg ctccatgaaa taggaatcca
      661 ggaaggaggc gtcgtccgag gtcagctcgg cggaattgca gatgacgaga ccagcacctg
      721 ccagcagccg gcgcaattcc acgaaggcgg cctgctgcgc cgccaccagc gccttggcct
      781 gcgcattgat ggcgatgagc tgctgggcag gggtcagccc atcggccgag tgctccagca
      841 cgccggcgcg ctcctggccg atgaggccgg ccacgcgcac ggagtagaat tcatccaggt
      901 tggaggcgga gatggagacg aagcgcaaac gctccagcag cgggtggcgg gtattctgcg
      961 cctccccgac gacacggaaa ttgaaatcca gccacgatag ctcgcggttg atgaaacgcg
     1021 cggggtcgtc cttggcgagg gcgggggcgg aggcgtgggt gggagcatga gcggcggcgg
     1081 ggacggggct ggcgatctga tccatggctg accctatatc aggcttccca taaatggcgt
     1141 gtgatgaatc tgtaacatca ggcttcgtcc ttgatgagtc ctgcaataat ttccagcgcc
     1201 agggcgcggg tgatacgcgc gccccggcct tcgctggtca actccagccc ggcgcggtcc
     1261 agcctggcca tggcctcgcg gtagaaggcc ggggcgcgcg gcaggtgcag cagcagcgcg
     1321 ttgcgcacgg ggatgctgag cgagagctgg tgctgggcgg cgagcttggt gaggagctgg
     1381 gccaggagct catcctcggg cgggcggatt tccacggtgc tggcggcgcg caggcgggag
     1441 gtgagatcgg ccagcttata ggccatgcgc gcgggcggca ggcgggcggc catcagcacc
     1501 ggctgcccgg cctcggccgc catgttcagc agatgcagca gggccgccgg gtccggcgcg
     1561 atgtcggcat catcaagggc gatgg
//
LOCUS       DASQCV010000132         1652 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1020605, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000132 DASQCV010000000
VERSION     DASQCV010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1020605"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..361)
                     /locus_tag="VEQ16_01965"
     CDS             complement(<1..361)
                     /locus_tag="VEQ16_01965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase"
                     /protein_id="HYP62621.1"
                     /translation="MTDIFPTDRARFREAMARLGAAVNIITTHGPEGDNGFTASAVCS
                     VTDDPATILVCMNRSSSQHEIFKAAGIFCVNILTPDQEELSPIFAGKMPMEERFTHAE
                     WIRLATGAPVLAAAAAAL"
     gene            complement(487..810)
                     /locus_tag="VEQ16_01970"
     CDS             complement(487..810)
                     /locus_tag="VEQ16_01970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62622.1"
                     /translation="MGRIIIDAKFPDAVAELRGAQRINSGIKARLAYGGLTPGLVSCE
                     IFDISDTGLRVSTYAQLDPCPEIFSVEFLGLYHRARRAWNRGNEIGLEFIHEEGDGLP
                     ADSLC"
     gene            complement(901..>1652)
                     /locus_tag="VEQ16_01975"
     CDS             complement(901..>1652)
                     /locus_tag="VEQ16_01975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004272304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP62623.1"
                     /translation="ETHVRDYGVDIMNLQRAVRVIPANAPGGLIGLELENGATLKTRS
                     LVLAPGARWRQMGVPGEQEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLA
                     GIVSHVTLIEFDKELRADAVLQRKLESLSNATIIKFALSTEVQGDGNKVTGISYKDRA
                     TEEMHFIELEGIFVQIGLVPNTEWLKDSVRLTPRGEIEVDARGETSAPGVFAAGDATT
                     VPYKQIVIAAGDGAKAALSAFDYLIRNSVAA"
BASE COUNT          294 a          510 c          534 g          314 t
ORIGIN      
        1 ccaaagccgc ggcggcggcg gccagaacgg gtgccccggt ggcgaggcga atccattcgg
       61 cgtgggtgaa gcgctcttcc atcggcattt tgccggcgaa aatcggggag agttcttcct
      121 ggtccggggt gaggatattc acgcagaaaa tgccggcggc cttgaagatc tcgtgctggc
      181 tggagctgcg attcatgcag acgaggatgg tcgccggatc gtcggtgacg ctgcatacgg
      241 cggaggcggt aaagccgtta tcgccttccg gcccatgggt ggtgatgatg ttcaccgcag
      301 cgcccagccg cgccatagcc tcgcggaagc gcgcgcggtc ggttggaaaa atgtcagtca
      361 tgcggcgctc cccggagcaa atgtcggttt tccctgactt atgccagatt ggggatttgt
      421 aaagcgcggc aagggcgggg ggcgttttcg cgggccggcg ctcaagcgac cagcgccgcc
      481 gaatggtcag cagagcgagt cggcgggcag gccgtcacct tcctcatgga tgaattccag
      541 cccgatttcg ttgccccggt tccaggcacg gcgggcgcgg tgatacaggc ccagaaattc
      601 gacggagaaa atttccgggc aggggtccag ttgggcgtag gtgctcacgc gcaggcctgt
      661 gtccgagatg tcgaaaatct cgcaacttac caggccgggc gtgaggccgc cataggcgag
      721 ccgggccttg atgccggaat tgatgcgttg cgcgccgcgc agttcggcca cggcgtcggg
      781 gaatttagcg tcgatgataa tccggcccat gcgtcactcc tgtacaacta gaagtgaaag
      841 acaatgtagg ccttcgcgcc tgccttgtgg agaggcgggc gctattattg aggctttatc
      901 tcaggccgcg acgctgttcc ggatcaggta atcgaaagcc gagagcgcgg ccttggcgcc
      961 atcgccggcg gcaatcacga tctgcttata gggcacggtc gtggcgtcgc ccgccgcaaa
     1021 tacgcccggt gcggaggtct cgccgcgcgc gtccacctcg atctcgccac gcggggtgag
     1081 cctcaccgaa tccttcagcc attccgtgtt tggcaccagc ccgatctgca cgaaaatgcc
     1141 ctcaagctcg ataaaatgca tctcctccgt ggcgcggtcc ttatagctga tgccggtcac
     1201 cttgttgccg tcaccctgca cctcggtgct cagcgcgaac ttgatgatgg tggcattgga
     1261 caggctctcc agtttgcgct gcagcactgc gtccgcacgc agttccttgt cgaactcgat
     1321 gagcgtgaca tggctgacga tgccggcgag gtcgatggcc gcttccacgc ccgaattgcc
     1381 gccgccgatc accgccacgc gcttgccctt gaaaagcgga ccgtcgcaat gcgggcaata
     1441 ggcgacaccc ttgttgcgat attcctgctc gccgggcacg cccatctgcc gccagcgcgc
     1501 accaggcgcc agcaccaggg agcgcgtctt caacgtggcg ccgttctcca gctccaaccc
     1561 tatgagcccg cccggcgcat tggccggaat gacgcgcacg gcgcgctgca gattcatgat
     1621 gtcgacgccg taatcgcgca catgggtttc ca
//
LOCUS       DASQCV010000133         5138 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2845057, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000133 DASQCV010000000
VERSION     DASQCV010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5138
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2845057"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            91..1011
                     /locus_tag="VEQ16_01980"
     CDS             91..1011
                     /locus_tag="VEQ16_01980"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP62624.1"
                     /translation="MADFNRNSTAREVARGVDLRGKQIVLTGAASGIGLETARALALI
                     GADLVLGVRRLDAGEDLARTLPGRVTALPLDLSDFASIEAFAAKIESPVDILIANAGV
                     SKTPDSHLPNGLEVRFATNHLGHFLLALRLHAQMAQRGARLIAVSSAAHKGCPIHLDD
                     LQWRNRPHFDGLAYAESKSANILFTQEAMRRWSAQGIFANAVLPGSALTGLQRYHGDA
                     LKRRIGFINEDGSVNEFVKTHEQAAATSVWAATAPELAGRGGLVLEDCAEALPVTPDT
                     HVWSGYDSSVADPATAKALWDHSLELLNER"
     gene            complement(998..1651)
                     /locus_tag="VEQ16_01985"
     CDS             complement(998..1651)
                     /locus_tag="VEQ16_01985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007438745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HYP62625.1"
                     /translation="MSITLYYFPTPNGRKVSIALEEMGLGYKLQRVNILEGEQAVPEF
                     LAVSPNGRIPGLTDELASGEPVTLFESGAILQYLGRKSGQFYPQDEVRRTQVDAWVFW
                     QMAGLGPMTGQVTWFRRAAAKEERDPRDTSFAIHRYEKEMRRLYDVLETRLAGRDYIC
                     RDYSIADMASWPWVNQHYNYLGELQKFPHIFAWHERILARPAVQKALSLGLEGLSAR"
     gene            complement(1648..2103)
                     /locus_tag="VEQ16_01990"
     CDS             complement(1648..2103)
                     /locus_tag="VEQ16_01990"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYP62626.1"
                     /translation="MKKADISEAAARTGASSYPPPHDEKLQGRKTWIITSQYKLTQFG
                     VNRVELPPGGWSTQRHWHRSNDEAVIVISGELTLVTDDGEEILRPGDCVAFKAGDRNA
                     HHLQNRGDKPAIYYDIGGRDPWDVSTFPDIGLEARTMMQMEFRPIKDKT"
     gene            complement(2116..2979)
                     /locus_tag="VEQ16_01995"
     CDS             complement(2116..2979)
                     /locus_tag="VEQ16_01995"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYP62627.1"
                     /translation="MEAIDAELLISFGSVRIIRQSWAAPIDRCGVQNLHHLELSLLPR
                     SDLAQASYPAHWGPHRFEPIGELFLVPGGEMMHARSECQHQNSIVLNFVPAALDKYFG
                     SKLEWTGRRLRGCLDIVSHDIRSLLFRIGEEARAPGLASQAMIELMAAQIMIELARYL
                     QGLDEEKAIGGLAPWRLRLIDERLAGDINPPSVAELAALCNISVRHLTRAFRVSRGRS
                     IGNYVLEHRITHAKKLIESGMSIKSVAVAMNFTASSNFTAAFRRATGETPREYKQRVS
                     RNIQLIAAHLH"
     gene            complement(3100..3966)
                     /locus_tag="VEQ16_02000"
     CDS             complement(3100..3966)
                     /locus_tag="VEQ16_02000"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class F420-dependent oxidoreductase"
                     /protein_id="HYP62628.1"
                     /translation="MKIGASYPVTEIVGNPEDVRKFVAAAEELGFSHMMAYDHVVKAP
                     HEGREPKLTGPYTEKDSFHDPFVLFAFAAALSQKLEFATGVLVLPQRQTALVAQQAAD
                     VDLLSRERLRLGVGIGWNYVEYEALGQDFKTRNKRLEEQIGLLRELWTNPIVSFQGRF
                     DHIDRAGINPRPRRQIPLWLGGHSEPAYERGAKLGDGFIFAADGKGALEAWARVKHHL
                     AALGRDETAFGRELLAIFARGPQEAADAIKQFREAGGTHGTVQSMNQGLPREIEAHIE
                     YLAKAKKLIDAG"
     gene            complement(4068..4874)
                     /locus_tag="VEQ16_02005"
     CDS             complement(4068..4874)
                     /locus_tag="VEQ16_02005"
                     /inference="COORDINATES: protein motif:HMM:NF019322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HYP62629.1"
                     /translation="MDQKLKPTGRRASSKEGRSRTAPAQAKIVQPLYLQVATALKDEI
                     LSGIHPVGAQLPTEHDLCARFAVSRFTVREALRQLRDDGLIMSRQGAGTVVVPVAAPD
                     MYVLHAMSINDLLTFTTSTRFEIELMKMVAVDDQLAARIGVPPGEEWLTICGFRLTEG
                     QEAPVCWTEYYINREFAAVGRLLPRHNGPIFPLIEDLFALSIAEVQQEVTAVLISREQ
                     AARYHVTEGSPALEVRRIYKAADGRIVQVTINVHPTSRFRLSMTMRRVKG"
BASE COUNT         1002 a         1708 c         1404 g         1024 t
ORIGIN      
        1 acctcaacca gggtggcgcg cgcttcacct gggacgggca gaccgcctat ggcatgatgg
       61 aacgctcctc gcatacgagc ctcaccacca ttggctgatt tcaaccgcaa cagcaccgcg
      121 cgcgaggtgg cgcgcggtgt ggatttgcgc ggcaagcaga tcgtgctcac cggtgcggcc
      181 tccggcatcg ggctggaaac agcccgcgct ctggccctta tcggcgccga tctggtgctt
      241 ggcgtgcgcc gcctggacgc cggtgaagat ctggcccgga cgctgcctgg ccgtgtcacc
      301 gcgctgccac tcgatttatc agattttgcc tccatagagg ccttcgccgc aaaaatcgaa
      361 agccccgtcg acatcctcat cgccaatgcc ggtgtctcca aaaccccgga ctcgcatctc
      421 cccaacgggc tcgaagtgcg cttcgcgacc aaccatctcg gccatttcct gctcgccttg
      481 cgtctacatg cgcaaatggc gcaacgcggg gcacggctca tcgccgtcag ctctgccgca
      541 cataaaggct gccccatcca tctcgacgat ctgcaatggc gcaaccgccc gcatttcgac
      601 ggcctggcct atgcggaatc gaaaagcgcc aacatcctct tcacccagga agcaatgcgc
      661 cgctggtccg cgcagggcat ttttgcgaat gccgtgctgc cgggctcggc cctcaccggg
      721 ctgcaacgtt atcatggcga cgcgctcaag cgtcgcatcg gcttcatcaa cgaagatggc
      781 agcgtcaatg aattcgtgaa aacccacgag caggccgccg ccaccagcgt atgggccgca
      841 accgcgcccg agcttgccgg ccgtggcgga ctggtgctgg aggattgcgc cgaagccctg
      901 cccgtaaccc ccgacacgca tgtctggtca ggctatgatt cctcggttgc cgatcccgcc
      961 acagcgaaag ccctatggga ccattcgctc gaactgctca acgagcgctg agcccctcca
     1021 gccccagact cagcgccttc tgcaccgccg gccgcgccaa aatccgctca tgccatgcaa
     1081 aaatatgagg gaatttctgc aactctccca gatagttgta gtgttggtta acccagggcc
     1141 atgatgccat gtcggcaatg gaataatccc tgcaaatata atcacgcccc gccagccgcg
     1201 tctccagcac atcataaagc cggcgcattt ccttctcata gcggtgaatg gcaaacgagg
     1261 tatcgcgcgg atcgcgctct tccttcgctg ccgcgcgccg gaaccaggtg acctgcccgg
     1321 tcatcggccc cagccccgcc atctgccaga agacccacgc atccacctgc gtccgccgca
     1381 cctcgtcttg cggataaaac tgcccgctct tgcggccgag atattgcaaa attgcaccgg
     1441 actcaaacaa ggtcacgggc tcgccggatg ccaactcatc cgtcagcccc ggaatacgcc
     1501 cgttcgggct gacggccaaa aattcaggca cagcctgctc accttccaga atattcacac
     1561 gttgcagctt gtagccgagt cccatctcct ccagtgcaat gctcaccttg cggccattgg
     1621 gcgtgggaaa ataatagagg gtgatgctca cgtcttgtcc ttgatcggcc ggaactccat
     1681 ctgcatcatc gtccgcgcct caagcccaat atcggggaag gtggagacat cccagggatc
     1741 gcgtccgcca atatcgtaat agatcgccgg cttgtcgcca cggttctgta gatgatgcgc
     1801 attgcggtct ccggccttga aggcaacgca atcgcccggc cgcagaatct cctcgccatc
     1861 atcagtcacc agcgtcaatt cgccggaaat cacgatcacc gcctcgtcat tgctcctgtg
     1921 ccaatggcgc tgcgtcgacc atccgcccgg cggcagttct acgcggttca caccgaattg
     1981 cgtgagctta tattggctgg tgatgatcca tgtcttgcgc ccctgcaatt tctcgtcgtg
     2041 agggggcggg taggaactgg caccggtgcg tgccgccgct tcgctgatat cggctttttt
     2101 catggttcct tctgttcagt gcagatgcgc ggcgatgagc tggatattgc ggctcacgcg
     2161 ctgcttatat tcacgcggcg tctcacccgt ggcgcggcgg aaggcggcgg tgaaattcga
     2221 tgaggcggta aaattcattg ccaccgccac ggattttatg ctcatgccgg actcgatcag
     2281 cttcttcgca tgggtgatac gatgctccag cacataattg ccaatggagc gcccacggct
     2341 gacgcggaag gcgcgggtga gatggcgcac ggaaatattg cagagcgccg ccagctccgc
     2401 gacggatggc ggattgatgt cccccgccaa ccgctcatcg atcaaccgca gccgccacgg
     2461 cgccagcccg ccaatcgcct tttcctcatc cagcccctgc agatagcgcg ccagctcgat
     2521 catgatctgc gccgccatca gctcgatcat cgcctggctg gcgagccccg gcgcgcgtgc
     2581 ctcctcgccg atgcggaaga gcaggctgcg tatgtcgtgg ctgacaatat ccaggcagcc
     2641 ccgcaaccgc cgcccagtcc attccagttt ggacccaaaa tatttatcca gcgccgccgg
     2701 cacaaaattg agcacgatgg aattttggtg ctggcactcg ctcctggcat gcatcatctc
     2761 gccgcctggg accagaaaca gctcgccaat tggttcgaaa cggtgcggcc cccaatgggc
     2821 ggggtagctg gcttgggcca ggtccgagcg cggcagaagc gacagctcca gatggtgcaa
     2881 attctgcacc ccgcagcgat cgatcggcgc cgcccagctc tgcctaatga tccgcacgct
     2941 gccaaaagaa attagcagct ccgcgtctat ggcttccata tttcctcctc cggcggctgg
     3001 cgccgctctt gtaaggagag tttaaaggaa gggcaggggc gtcgtaaatt acagattact
     3061 gcttaaacgg ccagaatgat gcaataagga ctcaagcgct catccggcat caatgagctt
     3121 ttttgccttg gccagatact cgatatgcgc ctcgatctcc cgcggcagcc cctggttcat
     3181 agactgcacc gtgccatgtg tgccacccgc ttcgcggaat tgcttgatgg catctgccgc
     3241 ctcttgcggg ccgcgcgcga aaatcgccag cagctcgcgc ccgaaggcag tctcatcccg
     3301 gcccaaggcg gccagatgat gtttcacccg cgcccaggct tccaatgccc ccttgccatc
     3361 agccgcgaaa atgaacccat cccccagttt cgcaccgcgt tcataggccg gctcgctatg
     3421 cccacccagc cataatggaa tctgccggcg cgggcgcggg ttgatgccgg cgcggtctat
     3481 gtggtcgaac cgcccttgga aactcacgat ggggtttgtc caaagctccc ggaggagccc
     3541 aatctgctcc tcaagccttt tattcctggt tttgaaatcc tgtccaagcg cctcatattc
     3601 aacgtaattc cagccaatcc ccacacccag ccgcaaccgc tcgcgggaga gcaggtccac
     3661 atccgccgct tgctgcgcca cgagcgcggt ctgacgctgc ggcaacacca gcacgccggt
     3721 ggcgaattcc agcttttggc tcagggcggc ggcaaaagcg aacagcacga acgggtcatg
     3781 gaaggaatcc ttctccgtat agggcccggt tagtttcggc tcgcgcccct catgcggcgc
     3841 cttcaccaca tggtcatagg ccatcatatg gctgaagccg agttcctcgg ccgcagcaac
     3901 aaatttgcgc acatcttccg gattcccgac gatttcagtc acagggtaag acgccccgat
     3961 cttcattttg ctcctcctcc ccaccgccgc ggcgcagtgc caggcaggca gattataata
     4021 tattggaata tttcatcttt ccgccgcatg gcgcagcggc gaggggatta cccctttacc
     4081 cgccgcatcg tcatggacag gcggaagcgc gaagttggat gcacattgat cgtcacctgc
     4141 acgatccttc catccgccgc cttataaatg cgccgcacct ccagcgccgg agagccctct
     4201 gtcacatgat agcgtgccgc ctgctcgcgg gagatgagca ccgccgtcac ctcctgctgc
     4261 acctcggcga tgctgagggc gaaaagatcc tcgatgagcg gaaaaatcgg cccgttatgg
     4321 cgcggcagca gccgccccac cgcggcgaat tcgcggttga tataatattc ggtccagcag
     4381 accggcgctt cctgcccctc ggtgaggcgg aagccgcaga tggtcagcca ttcctcgccc
     4441 ggcggcacgc cgatgcgcgc ggcaagctgg tcatccaccg ccaccatctt catcagctcg
     4501 atctcgaatc gcgtgctggt ggtgaaggtc agcaggtcgt tgatcgacat ggcatgcagc
     4561 acatacatgt ccggcgccgc caccggcacg accaccgtgc ccgccccctg gcgcgacatg
     4621 atgagcccgt catcgcgcag ctgccgcaac gcctcgcgca ccgtaaaccg gctcacggcg
     4681 aagcgcgcgc acaaatcatg ctctgtcggc agctgggcac ccacgggatg gattccgctc
     4741 aaaatctcat ccttcagcgc cgtggccacc tgcagataga gcggctgcac gatcttggcc
     4801 tgggcgggag cggttctgct gcggccttcc ttggatgagg cccggcgtcc ggttggtttg
     4861 agtttctggt ccatggtccc ttgctaaaat tctgtgccgc cctgccggcc cttcttagcc
     4921 gtcaagtcca gtatagtcat agtttagcct atttcgcaca atttcgctcc tggtaacatc
     4981 gcttgtcctg atatgtgacg gcaagccggt ctgttccgga ggcttgagac ggtttcgtac
     5041 aattgttttc cttacttgtc cgtacataac tgtgaaaacc acgaaaaaca acacaaaaac
     5101 cgtatccgcg ccggttgacc cgtgactgat tcatgcta
//
LOCUS       DASQCV010000134         3210 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_855257, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000134 DASQCV010000000
VERSION     DASQCV010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3210
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_855257"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..1188
                     /locus_tag="VEQ16_02010"
     CDS             112..1188
                     /locus_tag="VEQ16_02010"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: protein motif:HMM:NF015047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016703 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of one atom of oxygen (internal
                     monooxygenases or internal mixed function oxidases)
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HYP62630.1"
                     /translation="MSGWPDRRILDLFGIDLPIIQGPMAGATTPEMVIAVSEAGGLGS
                     LPCAQYNLTQAREALASIRRATSKPINLNFFCHRPPEPDPARMMAWRARLAPYYVELG
                     LDPEAPIPAGGRTPFDAEFCAFVEEVRPEVVSFHFGLPEQALLARIKATGAKIISSAT
                     TVAEARWLEAHGCDAIIAMGFEAGGHRGTFLSEDMARQIGTFALVPQVVDAVALPVIA
                     AGGIADARGIIAAFALGAAAVQIGTAYLFCPEAKISAPHRQALASVSDEDTAVTNLFT
                     GRPARGIMNRLMREIGPISPLAPSFPLAGGALAPLRAKTEPEGSGDFANLWAGQAARL
                     GRERPAGELTRALGAQALEKLAAS"
     gene            1316..1579
                     /locus_tag="VEQ16_02015"
     CDS             1316..1579
                     /locus_tag="VEQ16_02015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62631.1"
                     /translation="MAAAWIALSSPTEAAQQLIPAPYPEGFGSNAVIGRPLAETHYHQ
                     HLIPTPVPQTLGPNALGHPKFWRHSRHQHLVPTPYWRQYHHFQ"
     gene            1720..2241
                     /locus_tag="VEQ16_02020"
     CDS             1720..2241
                     /locus_tag="VEQ16_02020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62632.1"
                     /translation="MVFAAFGLAASAGLAQAQQAVQPMVGGAPILTRGGGIAGTSAGT
                     GTTGTGTTAFRPPQVVAGVGHIGAGTGGTGLGMGNATGGIHATALGAGSGGVNDLGSL
                     GSGTGGIFGTGRGLGAGAGGVVDAVNIGINTGGIEGTAIGSGIGGIADLNGYATGTGG
                     INENNGIRFRVVQ"
     gene            2213..>3210
                     /locus_tag="VEQ16_02025"
     CDS             2213..>3210
                     /locus_tag="VEQ16_02025"
                     /inference="COORDINATES: protein motif:HMM:NF001911.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HYP62633.1"
                     /translation="MAFVSGWCNDWLREEHSLSSHPPVERSCRRSEGLAMQPGLQALR
                     IKKIRRAGGPRYFWERYFWLSLGFLLALFSLPTLAQQAQQPQPHTQILWLGHSAVRIT
                     TPGGKNIVIDPFIMQNPATPRVWKDYVKLGPVDLLLVTHGHADHTGDVFALSRIHRAP
                     VYAPAGLASTFQTLGLLPPDLTPMMNKGGTVTPLGPNIKISMVHADHSSEFVQLDPFT
                     NRRVTFNGGEPAGFIIELENGFRIYHMGDTALFSDLRLIAQRYHPDLVMIPIGGTFTM
                     DPKDAAIALKEYLKPKYAIPIHYGTFPALTGTPQELIEALGPGTTQVIVMQPGDTH"
BASE COUNT          599 a         1012 c          980 g          619 t
ORIGIN      
        1 taaaggatgc gggcgttcag gaagaagaaa tagaaaccaa gtttgatttt tcggagcctt
       61 ggagtcgcaa acgaggcacg cccgcccctc gcccacagaa tggagaccgc catgtcaggc
      121 tggcccgacc gtcgcattct ggacctgttc ggaattgatc tgccgatcat ccagggcccc
      181 atggccgggg cgacgacgcc cgaaatggtg atcgcggtga gcgaagcggg cggcctcggc
      241 tccctgcctt gcgcgcaata taacctcacc caggcgcgcg aggccttggc aagcatccgc
      301 cgggcgacct cgaagccgat caatctcaac ttcttctgcc atcgaccgcc cgagcccgat
      361 ccggcgcgaa tgatggcgtg gcgggctcgg ctcgcgccct attatgtgga gctggggctt
      421 gatccggaag cgccgatccc ggcaggcgga cgcacccctt tcgatgccga attctgcgcc
      481 tttgtcgaag aggttcgccc tgaagtcgtg agcttccatt tcgggcttcc cgaacaagcc
      541 ctgttggcgc ggatcaaagc aacgggcgcc aaaatcattt cctcggcgac aacggtcgcg
      601 gaagcgcgct ggctcgaagc gcatggctgc gacgcgatca ttgccatggg gttcgaggct
      661 ggcggccatc gcggcacttt cctcagcgaa gacatggcgc ggcagatcgg gacttttgct
      721 ttggtgccgc aggtcgtgga cgcggtcgcc ctgccggtga tcgcggcggg aggcattgcc
      781 gatgcgcgcg gcattatcgc ggccttcgcg ctgggtgctg ccgccgtgca gatcggcacc
      841 gcctatcttt tttgtcccga agcgaagatt tcggcaccgc accggcaggc gctggcaagc
      901 gtcagcgacg aggataccgc cgtcactaat ctcttcaccg gacggccggc gcgagggatt
      961 atgaacaggc tcatgcggga aatcgggccg atctcgccgc tcgccccgag ctttcccctc
     1021 gcgggcgggg cgctggcgcc cttgcgggcc aaaaccgagc ctgaagggtc aggcgatttc
     1081 gccaatctgt gggccggtca ggcagcaagg ctcggcaggg aacgccctgc gggcgagctg
     1141 acacgggcgc tcggcgcgca agccctcgaa aagctcgcgg caagttgagg ctgaagacct
     1201 ctcttgtgtc gccagctgca agcaccatgt ccagaaagtg gcaggggttt gcgaaatgtt
     1261 gcgacaaaga aattacctgg gccgcggccc tttcccgcgt tctctggaat tggctttggc
     1321 ggcagcctgg atcgcccttt caagccctac agaggccgcg cagcagctca tcccggcgcc
     1381 ctatcccgaa ggcttcggct ccaatgctgt cattggccgc cctttggcag aaacccacta
     1441 tcaccagcat ttgatcccca cgccggtgcc gcaaaccctt ggccccaatg cgctcggcca
     1501 cccaaagttc tggcgccata gccgtcacca gcatctggtg ccaacgccct attggcggca
     1561 atatcatcac tttcaatgag tgaatttcca ctttgccgcg agcgcgactg tttccaggct
     1621 tggaaacata gtttattctg ctaattcgaa agctccgccg gtaggattca gcgctagggg
     1681 atcacaatgt ccagacgaat cgggtccaga ctgtcagcct tggtcttcgc tgcctttggc
     1741 cttgccgcct ccgccggcct cgcgcaggcg cagcaggccg tccagcccat ggtcggcggt
     1801 gcgccaattc tgaccagggg cggcggcatc gccggcacga gcgcgggcac gggcacgacg
     1861 ggtactggca cgaccgcgtt ccgtccacct caggtcgtgg ccggtgttgg gcatattggc
     1921 gcgggtacgg gcggcaccgg cttgggcatg ggcaatgcga cgggcggcat ccacgctacc
     1981 gcgctcggtg cgggcagcgg cggcgtcaat gacctgggga gcctgggcag cggcaccggc
     2041 ggtatcttcg gaacaggacg cggtctcggc gcgggtgcgg gtggcgtcgt cgacgccgtc
     2101 aatataggca tcaacaccgg cggtatcgag ggcaccgcga tcggttccgg aatcggcggc
     2161 atcgccgacc tcaacggcta tgccaccggc acgggcggca tcaacgaaaa caatggcatt
     2221 cgtttccggg tggtgcaatg attggctaag ggaggagcat tcgctctcct cgcatccgcc
     2281 agttgaaaga agttgcagaa gaagcgaagg gcttgcgatg caaccaggat tgcaggctct
     2341 gcgcattaag aaaatcagac gcgctggcgg cccaagatat ttttgggaaa gatatttttg
     2401 gctgagcctc ggctttctcc tcgcgctttt cagccttccc accctggctc agcaagctca
     2461 gcagccgcag ccccatacgc aaattctctg gctcggccat tcggcggtgc ggatcacgac
     2521 gcccggcggc aagaatatcg tgatcgatcc tttcatcatg caaaatcccg cgaccccgcg
     2581 ggtctggaag gattatgtga agcttggccc tgtcgatctc ctgctcgtca cgcatggtca
     2641 tgccgatcat accggcgatg ttttcgctct ttccaggatc caccgggcgc ctgtctatgc
     2701 ccctgccggt ctcgccagca cgtttcagac cctgggtctc ctgccgccgg atctcacgcc
     2761 catgatgaac aagggcggta cggtcacgcc gcttggtccg aacatcaaga tcagcatggt
     2821 gcatgccgat cacagttccg aattcgtcca gctcgatcct ttcaccaacc gccgtgtgac
     2881 tttcaacggt ggcgaaccgg ccggcttcat catcgagctc gaaaacgggt ttcgtatcta
     2941 tcacatgggc gatacggcgc tgttttccga cctgcggctc attgcccagc gctatcatcc
     3001 agacctcgtg atgattccga ttggcgggac attcaccatg gacccgaaag atgcggccat
     3061 cgcgctgaaa gaatatttga aaccgaaata tgcgatcccg atccattatg ggacgtttcc
     3121 ggcgctcacc ggcacgccgc aggaattgat cgaggcgctt ggccccggca cgacacaggt
     3181 cattgtcatg cagcccggcg acacgcacga
//
LOCUS       DASQCV010000135         1511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1850568, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000135 DASQCV010000000
VERSION     DASQCV010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1850568"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(222..1376)
                     /locus_tag="VEQ16_02030"
     CDS             complement(222..1376)
                     /locus_tag="VEQ16_02030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62634.1"
                     /translation="MLRLVSFQLYRVEPDRALMDQSIEPEEGREQKVLDALHRAAVFC
                     DTRIGWNRIGIVLSVTIIAVAAVVLYRILRTIDAGEVVDALATADWRDVSLAALYVAG
                     GYFTLTFYDVFALHSIGRQDVPYWAAALAGFTSYSVGHNVGASVLTGGAVRYRIYSAW
                     GLTAVDVAKLCFIAGLTFWLGNATVLGLGIFLVPSAASAIDQLPPWLNRAGAMLILVL
                     LVFYVGWVWQRPRMVGRSGWRVTLPGGPLTLLQIGIGIVDLGFCALAMYMLVPEEPNI
                     NFVTLAVIFVSATLLGFASHAPGGIGVFDAAMLVALWQFDKEDLLAGLLLFRLLYYIV
                     PFGLALIILGLRELYLMLRGTPPPPIPHIPSLAPTEVVSPPIEPREEQIP"
BASE COUNT          341 a          473 c          472 g          225 t
ORIGIN      
        1 tttgcggcaa aaacgcaggc ccaggtggcg gtggctgaca aggccgaacc tgcccccaca
       61 attcgcacag cggttttccg gcttggtcat gacacttccc tccgtagtgg aggttgctca
      121 cgtcttgcga cagagcatat atgccggtgc gcattgccgc gggatttccg cgccattaat
      181 gtttggcaat attcgcagct accagcgtac cctcgacgct tctagggaat ttgctcctcg
      241 cgcggctcga tcggcgggct gacgacctcg gtaggcgcaa gcgacggtat gtgggggatg
      301 ggcggcggcg gggtgccgcg gagcatcaga taaagctcgc gcagtcccaa aattatcagg
      361 gccaggccga aggggacgat ataatagagc agccggaaca ggagcaagcc ggccagcaaa
      421 tcctccttgt cgaactgcca gagcgcaacc agcatggcgg catcgaagac gccgatgccg
      481 ccgggagcgt ggctcgcaaa cccgagcagc gtcgccgaga caaagatcac cgccagcgtg
      541 acgaaattga tgttgggctc ctccggcacc agcatgtaca tggccagagc gcagaagccg
      601 agatcgacga tgccgatgcc gatctgtaac agcgtgaggg ggccgcccgg cagcgtgacg
      661 cgccagccgc tgcggccgac catgcgcggg cgctgccaca cccagccgac atagaatacc
      721 agcagcacca ggataagcat ggcgccggca cgattgagcc atggcggcag ctggtcgatg
      781 gcgctggctg cagacgggac caagaagatg ccgaggccca gaaccgtggc gttgcccagc
      841 cagaacgtca gcccggcgat gaagcagagt ttggcaacat caacggcggt aaggccccag
      901 gcggaataga tgcgatagcg caccgcgccg ccggtcaata cgctcgcccc cacattgtgc
      961 ccgacggaat agctggtgaa gccggcgagc gccgccgccc agtacggcac atcctgccgg
     1021 cctatggagt gcagcgcgaa tacgtcatag aaagtcagcg tgaaatagcc tccggcgaca
     1081 tacagcgcag cgagcgaaac gtcgcgccag tccgcagtcg caagcgcgtc cacaacctca
     1141 cctgcatcaa tggtgcgcag aatgcgatag agcaccaccg ccgcaaccgc gatgatggtg
     1201 acgctgagca cgatcccaat ccggttccag ccgatccggg tgtcgcagaa aacggccgcg
     1261 cggtgcagcg catcgagcac cttctgctcg cggccctcct ccggctcaat cgattggtcc
     1321 atcaaggcgc ggtccggttc aacgcgatag agctggaagg aaaccaacct caacaagccg
     1381 tagcaaaact cctgctggcg cgcgagggtt cgcccggcga cgccctcaga cgacgcctct
     1441 cagacttgcc gtatcgcaca atagcatgca gagtttttgg cgcgcagatg aggagaaaag
     1501 cccatgaagc a
//
LOCUS       DASQCV010000136         1571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1850604, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000136 DASQCV010000000
VERSION     DASQCV010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1850604"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..786)
                     /locus_tag="VEQ16_02035"
     CDS             complement(<1..786)
                     /locus_tag="VEQ16_02035"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HYP62635.1"
                     /translation="MRAIGIDFISVFGLAPAEFVKLAADLGCQHISIAPAPFTANPHN
                     YPLWSLREDKTLRHELASSLRNNNITISLGEGFLLRPGTDISAALSDMDLLQELGAPI
                     VNIVCLESDHSRAIAELASFAELAGARGMKATLEMMPGLPLGNLAQAAAAINETGSKN
                     LGLLLDSMHIFRSGATVADIAALDPATIFYAQLCDVPLVSKYPSYGEEARDNRLPPGE
                     GELPLAEFIAALPPDLMLGLEIPMLAAAQSGHGPRERLAPCVGA"
     gene            complement(798..>1571)
                     /locus_tag="VEQ16_02040"
     CDS             complement(798..>1571)
                     /locus_tag="VEQ16_02040"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP62636.1"
                     /translation="GATANIGRAIALDFAAEGAKLVAVGRDEEAGARVVEAALARGAQ
                     AAIFVKADLLDPTSPARILAAALTLGPVDVLVNNVGGNVGSGFFAESDPATWQGDIDI
                     TLMTNLRMTHAVLPGMIDRKSGRIINIGSTSGLVGDYMLPVYSAAKAAVHGFTRVLAK
                     EVGQHNITVNCVAPYGTVSDDPAAFSKGSRFNRETGFFKDAFKGTSPEDMKKRARTGP
                     LSRPVARPEEVSAAVLYLASNRADFVTGQVMQVDGGTLL"
BASE COUNT          290 a          444 c          569 g          268 t
ORIGIN      
        1 ggcgccgacg cagggcgcga ggcgctcgcg cgggccgtgg ccggattgcg cggcggcgag
       61 catggggatt tccaggccca gcatcaaatc cggtggcagg gcggcgataa actccgccaa
      121 aggcaactcg ccctcgcccg gcggcaggcg gttgtcacgg gcttcctcgc cgtaggaggg
      181 gtatttggag accaggggca cgtcacagag ctgggcgtag aagattgttg cgggatcgag
      241 cgctgcgatg tccgccaccg tagcgccgga gcggaagatg tgcatggaat cgagcagcag
      301 gccgagattt ttgctgccgg tctcgttgat ggcggcagca gcctgcgcga ggttgccgag
      361 tggcaggcca ggcatcattt ccaatgtcgc cttcatgccg cgggcgcccg caagttcggc
      421 gaaactggcg agctcggcga tggcgcgaga atggtctgac tccagacaga cgatgttgac
      481 gatgggtgcg ccgagttcct gcaggaggtc catatcggat aaggcggcgc tgatgtccgt
      541 gccggggcgg agcaaaaaac cctcaccgag cgagatggtt atgttgttgt ttcgcaatga
      601 tgaggccagc tcgtggcgca aggttttatc ctcgcgcaga gaccagagcg ggtagttatg
      661 cgggttggcg gtgaagggag cgggggcaat gctgatatgc tggcagccca aatccgctgc
      721 gagcttcacg aactcggccg gggccaggcc gaagacggag atgaaatcga tgccgatggc
      781 gcgcatgttt ttgctcctta cagcagcgtg ccgccatcga cctgcatgac ctggccggta
      841 acgaaatcag cgcggttgga ggcgagatag agaacggcgg cggagacttc ctccgggcgc
      901 gcgacgggac gtgagagcgg accggtgcgg gcgcgttttt tcatgtcctc gggcgaggtg
      961 cccttgaagg cgtccttgaa gaagccggtt tcgcggttga agcggctgcc tttgctgaag
     1021 gcggcggggt catccgacac agtgccgtaa ggggcgacgc aattcacggt gatgttgtgc
     1081 tggccaacct ctttcgccag cacgcgggta aagccatgca ccgcagcttt ggcggcggaa
     1141 tagacgggca gcatataatc gccgaccagc ccggaggtgg agccgatatt gatgatacgg
     1201 ccggatttgc ggtcgatcat gccgggcagc acggcgtggg tcatgcgcaa attggtcatc
     1261 agggtgatgt cgatatcgcc ctgccaggtg gcgggatcgg actcggcgaa gaagccggag
     1321 ccgacattac cgccgacatt attcaccagc acatcgaccg ggccgagcgt cagcgccgct
     1381 gccaggatgc gcgccggcga agtgggatcg agcaggtcgg ccttcacgaa aatagcggcc
     1441 tgggcgccgc gtgcgagcgc tgcctccaca acgcgcgcac cggcctcctc gtcgcgcccg
     1501 accgcgacga gcttcgcgcc ctcggcggcg aaatcgagcg cgatggcgcg gccgatattg
     1561 gcggtggcgc c
//
LOCUS       DASQCV010000137         1778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3012114, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000137 DASQCV010000000
VERSION     DASQCV010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1778
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3012114"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..182)
                     /locus_tag="VEQ16_02045"
     CDS             complement(<1..182)
                     /locus_tag="VEQ16_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter, permease protein
                     PstA"
                     /protein_id="HYP62637.1"
                     /translation="MSASVSNPSFHSDSSALALRRTIVSTAGWIACGIGLVLIIFPLL
                     DIVGVVAFNGIAAINW"
     gene            complement(163..1125)
                     /gene="pstC"
                     /locus_tag="VEQ16_02050"
     CDS             complement(163..1125)
                     /gene="pstC"
                     /locus_tag="VEQ16_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HYP62638.1"
                     /translation="MKIRPFRLTVLGLSLLIPAALVAVVLFLVGYSGQAIAFNGFHFL
                     TDVTWNLGDLYDDPVTVRGIQVPSGAEYGILVFIVGTLASSAIAILIAVPLSVGTAIF
                     LAEAVPELERSARRSLPWLPPIRPALAMLVELVAVVPSVVFGLWGIVVLVPFLGHHIS
                     PTGNGYGLLAASIVLALMITPIIASTLYDALCQVPKENRESAFALGSTHFEVVTKAMM
                     PMVRATLIGGIVLALGRALGETMAVLMVSGGGINILPTSLFSPISTIASFIVSQLDSA
                     ESDPTNMSVRALSQIALVLFIITLAVNAGAKLLSSGALNVRKRQ"
     gene            complement(1183..>1778)
                     /locus_tag="VEQ16_02055"
     CDS             complement(1183..>1778)
                     /locus_tag="VEQ16_02055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HYP62639.1"
                     /translation="PAHTIVPIHRLDGSGDTFIFTQYLSASDAGWASSLHYGTAVSWP
                     AVAGAVGAKGNSGMLTALQNNPYGIAYIGISFADKVAAAGLGQAALLNKDGNYVLPTQ
                     ENIAAAANSVANSTPADGRVSMIFSAGANNYPIVNYEYAIVNSQQPAPAISQAIRNFL
                     NWTVTEGNSPTYLNKVHFLPLPPAVATLSQAQINSIQ"
BASE COUNT          354 a          491 c          654 g          279 t
ORIGIN      
        1 tcccaattga tggcggcgat gccgttgaag gcgacaacgc cgacaatgtc gagcagcggg
       61 aagatgatca gcaccaagcc gatgccacag gcgatccagc cggcggtgct gacaatggtc
      121 cggcgcagcg cgagcgcgct gctgtcggaa tggaagctgg ggttactgac gcttgcggac
      181 attgagcgct ccggagctaa gcagtttggc gccggcattc acggccagcg tgatgatgaa
      241 gagaaccagc gcgatttgag agagcgcgcg caccgacatg ttggtcgggt cggactcggc
      301 gctgtcgagc tggctgacga tgaaggaggc gatggtggag atggggctga agagcgaggt
      361 cggcaggata ttgatgccgc cgcctgagac catcagcacc gccatggttt cgcccaaagc
      421 gcggcccagc gccagcacga tgccgccgat gagggtggcg cgcaccatcg gcatcatcgc
      481 cttggtcacc acctcgaaat gggtggaacc cagcgcgaag gcggattcgc ggttctcttt
      541 cggcacctgg cacagcgcat catacagggt ggaggcgatg atcggcgtga tcatcagcgc
      601 cagcacgatg gaggcggcga ggagcccata cccgttgccg gtggggctga tatggtggcc
      661 gaggaagggc accagcacaa cgatgcccca caggccgaac acgacggaag gcaccacggc
      721 cacgagttcc accagcatgg cgagcgccgg gcggatgggc ggcagccagg gcaaggagcg
      781 gcgtgccgag cgttccagct ctggcacggc ctcagccagg aagatggcgg tgccgaccga
      841 gagcggcacg gcgatgagga tggcgatggc cgagctggcc agcgtgccga caatgaaaac
      901 gaggatgccg tattcggcgc cggaaggcac ctgaatcccg cgcaccgtta ccgggtcatc
      961 gtacaggtcg ccgagattcc aggtcacatc ggtgaggaaa tgaaagccat tgaaggcaat
     1021 ggcttggccg gaatagccca ctagaaacaa aacaaccgcg acgagcgcgg cggggatgag
     1081 caggcttaag cccaggacgg tgagacggaa ggggcggatt ttcatgggac accctttaag
     1141 gcagaaaccc tcccggccgg aaccgggagg gcgttggtag gcttactgga tgctgttgat
     1201 ctgcgcctgc gacagggtcg cgacggccgg cggcagcggc aggaagtgga ccttgttcag
     1261 gtaggtcggg ctgttgcctt ccgtgacggt ccagttcagg aagttgcgga tggcctggga
     1321 gatcgccggg gccggctgct ggctgttcac gatcgcatat tcgtagttca cgatcgggta
     1381 gttgttggcg ccggcggaga agatcatgct gacgcgcccg tcggccggtg tgctgttggc
     1441 aacgctgttg gcggcggcgg cgatgttctc ctgggtcggc agcacatagt tgccgtcctt
     1501 gttcagcagc gcggcctggc cgagaccggc ggcggcaacc ttgtcggcga aggagatgcc
     1561 gatataggca atgccgtacg ggttgttctg cagcgcggtc agcatgcccg agttgccctt
     1621 ggcgccaacg gcgccggcaa cggccggcca ggacacggcg gtgccgtaat gcaggctgga
     1681 ggcccagcca gcgtcggaag cggagaggta ctgggtgaag atgaaggtat cgcccgagcc
     1741 gtccagacgg tggatgggga cgatggtgtg cgccggca
//
LOCUS       DASQCV010000138         1802 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2514586, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000138 DASQCV010000000
VERSION     DASQCV010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1802
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2514586"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1802)
                     /gene="alaS"
                     /locus_tag="VEQ16_02060"
     CDS             complement(<1..>1802)
                     /gene="alaS"
                     /locus_tag="VEQ16_02060"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HYP62640.1"
                     /translation="RFIEIWNLVFMQYEEGPPGTRNPLPRPSIDTGMGLERFAAILQG
                     QHDNYDTDTLRALILASAEETGQDPDGVFKTSHRVVADHLRSSAFLMADGVLPSNEGR
                     GYVLRRIMRRAMRHAHMMGAKTPLLYRLVPALTRQMGQAYPELSQAEALITETLELEE
                     NRFRSLLDRGISLLKDESQNIPKGGALSGEIAFKLYDTYGFPLDLTQDALREEGKTVD
                     TAGFDAAMAEQKARARAAWAGSGEAATEAVWFELEQSLGHTEFLGYSTETAEAAITAL
                     IVDGQPVQEALAGQTVYLLLNQTPFYAESGGQVGDTGHITGPDNLRIRITDTQRKLGG
                     LFVHIGVVEAGTARVSQPVAAEIDHDRRTNIRAHHSATHLLHEALRRTLGPHVTQKGS
                     LNGPDRLRFDISQPRPITPAELEEVERTVNAHIRENSEVTTRLMTPEEAVAHGAMALF
                     GEKYGDEVRVLSMGDPQEDKSGWSVELCGGTHVTRTGDIGLFRIVSEGAVSAGIRRIE
                     ALAGEAAVTAIEDESRLLSEAAATVKVPPAELPARITQLQEDKKRLERQVAELQRKLV
                     MATATQFEDVGGVKTILRNVGDIPAKELRPIATDL"
BASE COUNT          264 a          500 c          693 g          345 t
ORIGIN      
        1 aggtcggtgg cgatggggcg cagctctttc gcgggaatgt cgccgacatt gcgcaggatg
       61 gttttcacgc cgccgacatc ctcgaactgg gtggcggtgg ccatgaccag cttgcgttgc
      121 agctcggcga cctggcgttc cagacgcttc ttgtcttcct gcagctgggt gatgcgggcg
      181 gggagttccg cgggcggcac cttcacggtg gcggcggctt cggagagcag gcgggattca
      241 tcctcgatgg cggtgacggc ggcttcgccg gccaaggcct cgatgcggcg gatgccggcg
      301 gagacggcac cttccgagac gatgcggaac aggccgatat cgccggtgcg ggtgacatgg
      361 gtgccgccgc agagttccac ggaccaaccg gatttgtctt cctgcgggtc gcccatggag
      421 agaacgcgca cctcgtcgcc atatttctcg ccgaacaggg ccatggcgcc gtgggcgaca
      481 gcctcttcgg gcgtcatgag gcgggtagtg acctcgctat tctcgcggat gtgggcattg
      541 acggtgcgtt ccacctcttc cagctcggca ggtgtgatgg ggcggggctg ggagatgtcg
      601 aagcggagcc ggtccgggcc gttgagggag cctttctgcg tcacatgcgg gccgagggtg
      661 cggcgcaggg cctcgtgcag caggtgggtg gcggaatggt gggcgcggat attggtgcgg
      721 cggtcatggt cgatttccgc ggccacgggt tggctgacac gggccgtgcc ggcttcgacc
      781 acgccgatat gcacgaacag gccgccgagc ttcctctgcg tgtcggtgat gcggatacgc
      841 aaattgtccg ggccggtgat gtggccggtg tcgccgacct ggccgccgct ttcggcatag
      901 aaaggggtct ggttgaggag cagatagaca gtttggccgg ccagggcttc ctgcactggc
      961 tggccatcga cgataagggc ggtgatggcg gcttcggcgg tctcagtgct gtagccgagg
     1021 aattcggtgt ggccgaggct ctgctccagc tcgaaccaga cggcttcggt ggcggcctcg
     1081 ccggagccgg cccaggcggc gcgggcgcgg gctttttgct cggccatggc ggcgtcgaag
     1141 ccggcggtgt ccactgtctt gccttcctca cgcagggcgt cctgggtgag gtccagcggg
     1201 aagccgtaag tgtcgtagag cttgaaggcg atttcaccgg aaagggcgcc gcctttgggg
     1261 atgttttgcg actcatcctt gagcagcgag atgccgcggt cgagcaaaga gcggaaacgg
     1321 ttttcctcca gctccagcgt ttcggtgatc agcgcctcgg cttggctcag ctcgggatag
     1381 gcctgaccca tctggcgggt aagggccggg acgaggcggt agagcagcgg ggttttggcc
     1441 cccatcatgt gcgcgtggcg catggcgcgg cgcatgatgc ggcggagcac gtagccgcgg
     1501 ccttcattgg agggcagcac gccgtcagcc atgaggaagg cggatgagcg tagatggtcg
     1561 gcgacgacgc ggtggctggt tttgaagacg ccgtccgggt cctggccggt ttcctcggcg
     1621 gaggcgagga tgagggcgcg gagcgtgtcc gtgtcgtaat tatcgtgctg gccctgcagg
     1681 atggcggcga agcgttccaa gcccatgccg gtatcgatgg aagggcgggg cagcgggttg
     1741 cgcgtgccgg gcgggccttc ctcgtattgc atgaagacga ggttccagat ttcgatgaag
     1801 cg
//
LOCUS       DASQCV010000139         3763 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_359055, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000139 DASQCV010000000
VERSION     DASQCV010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3763
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359055"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..488)
                     /locus_tag="VEQ16_02065"
     CDS             complement(<1..488)
                     /locus_tag="VEQ16_02065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62641.1"
                     /translation="MSAALQTAEPVWLRELRATAQARFHGLGLPSAKTESWRFTNLRA
                     FAARPEEGLAALTLKGNPPAGVRFCTFQSLLATAPERLAALLDQAEAPDAFAALNLAR
                     FHDGYVLDIAPGVQLDAPLELIHTNQGGAAHLRGIVRLGAGASATLAEHHQGSGWTSS
                     VT"
     gene            complement(485..1234)
                     /gene="sufC"
                     /locus_tag="VEQ16_02070"
     CDS             complement(485..1234)
                     /gene="sufC"
                     /locus_tag="VEQ16_02070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019013096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HYP62642.1"
                     /translation="MLEIENLHARIAGGREILKGISLAVNAGEVHAIMGPNGAGKSTL
                     SSVLAGKPGYEVTAGRVLYNGTDISPLAADERARQGIFLAFQYPVEIPGVNNTYFLRA
                     ALNAGRRTRGELELDAAQFLKLVKQKLSLLDLKDDLLKRPVNVGFSGGEKKRNEIFQM
                     AMLEPKLAILDETDSGLDIDALRAVADGVNKLRSPGRAIVMITHYQRLLDYIEPDFVH
                     VLAGGRIVASGGKEFARELEQTGYAHLERAA"
     gene            complement(1270..2724)
                     /gene="sufB"
                     /locus_tag="VEQ16_02075"
     CDS             complement(1270..2724)
                     /gene="sufB"
                     /locus_tag="VEQ16_02075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007003294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HYP62643.1"
                     /translation="MSAHLDTIEQITAGGGDSYKYGFVTEIDVDTAPPGLTEDTVRFI
                     SAKKQEPLWLLEWRLKAFRRWQTMQQPDWARLNIAPIDYQGATYYAAPKNAEGPKSLD
                     EVDPELLKTYEKLGIPLGERAALAGIAVDAVFDSVSVATTFKDTLAAQGIIFCSFGEA
                     VREHPDLVQKYLGSVVPQGDNFFSALNSAVFSDGSFAYIPPGVRCPMELSTYFRINQA
                     KSGQFERTLLIADAGAYVSYLEGCTAPRRDENQLHAAVVELIALEGAEIKYSTVQNWY
                     PGDENGKGGIYNFVTKRGACRGKSSKISWTQVETGSAITWKYPSCILEGEDSVGEFYS
                     VAVTSNHQQADTGTKMIHLGRNSRSTIISKGISAGHGQNTYRGAVKIMPGAAAARNYT
                     QCDSLLIGKSCGAHAIPYIDTRNSTARVEHEATASKISDEQLFYCLQRGLTPEESVSL
                     IVNGFCKEVLKELPMEFAVEAQKLLSVSLEGAVG"
     gene            complement(2802..3311)
                     /locus_tag="VEQ16_02080"
     CDS             complement(2802..3311)
                     /locus_tag="VEQ16_02080"
                     /inference="COORDINATES: protein motif:HMM:NF013331.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II truncated hemoglobin"
                     /protein_id="HYP62644.1"
                     /translation="MTEPALFTRLGGTPGIARLVDEFYDLMERRPEFAALRALHAPDL
                     GATRDVLKLYLAEWTGGPADYSATKGHPRLRRRHMHIRIGAHERDDWMGCMSRALAAT
                     VADDTARATLTENFVKLADWMRNQPGNPHDAGTAYGGAVPAELAPGECVHVASSTVGK
                     TTNSGCSDG"
     gene            complement(3323..>3763)
                     /locus_tag="VEQ16_02085"
     CDS             complement(3323..>3763)
                     /locus_tag="VEQ16_02085"
                     /inference="COORDINATES: protein motif:HMM:NF015424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HYP62645.1"
                     /translation="AASGPLATLLTDFSFPLASRLGAATVLDLPVLGHDAAYGLTLCG
                     SAPLILTLPGQPAAVGARARVRILASDVSLLRQPVPSSILNTLPARILAVEMTGAPHV
                     VVALDIGGTRLLARITRKSWNQLALQTGQEVFAQVKATALAGEE"
BASE COUNT          655 a         1094 c         1288 g          726 t
ORIGIN      
        1 ttggtgacgc tgctggtcca gccgctgccc tgatgatgct cggccagcgt ggcgctggca
       61 cctgcgccta gccgcacgat gccgcgcaga tgggcggcac cgccctggtt ggtgtggatg
      121 agctctagcg gcgcatcgag ctgcacgccg ggggcgatgt ccagcacata gccatcgtga
      181 aaccgggcga gattgagggc ggcgaacgca tccggcgcct cggcctggtc gagcagggcg
      241 gcgaggcgct ccggtgccgt ggcaagcagg ctttggaatg tgcagaagcg cacacccgcg
      301 ggcgggttgc ctttgagggt gagtgcagcc agaccttctt ccgggcgcgc ggcgaacgcc
      361 cgcaggttgg tgaagcgcca ggattcggtt ttggcagaag gcaggccgag gccatgaaac
      421 cgcgcctgtg ccgtggcgcg cagctcccgc agccagacgg gttcggccgt ttgcagcgcg
      481 gcactcatgc ggcgcgctcc agatgagcgt agccggtctg ttccagttcg cgcgcgaatt
      541 ccttgccgcc ggaggccacg atgcggccgc cggccaggac gtggacgaaa tcgggttcga
      601 tataatcgag caggcgctgg taatgagtta tcatgacgat ggcgcggccg ggagagcgta
      661 atttgttcac gccgtcagcc actgcgcgca gggcgtcgat gtcgagccca ctatccgttt
      721 catcgagaat ggcgagcttg ggctccagca tcgccatctg gaagatttcg ttgcgcttct
      781 tctcgccgcc ggaaaagccg acattgacgg ggcgcttgag cagatcatcc ttgaggtcga
      841 ggagcgagag cttctgcttc acgagcttga ggaattgcgc ggcgtcgagc tccaactcgc
      901 cgcgcgtgcg gcggccggcg ttgagggcgg cgcgcaggaa ataggtgttg ttcacgcctg
      961 gaatttccac aggatattgg aaggcgagga agataccctg gcgggcgcgt tcgtcggcgg
     1021 cgaggggaga gatgtcggtg ccgttataga gcacacggcc cgccgtgacc tcataacccg
     1081 gcttaccggc cagcacgctg gagagggtgg attttccggc gccgttgggg cccatgatgg
     1141 cgtgaacctc gcctgcattg acggcaaggg aaatgccttt gagaatctcc cgcccgccgg
     1201 cgatacgcgc gtgcagattc tcgatttcga gcagcttggt catgggggct tctccttgtg
     1261 cgagggttat catccgactg cgccttccag gctgacgctg agaagcttct gcgcctcgac
     1321 ggcgaattcc atgggaagct ccttcagcac ttccttgcag aagccgttga cgatgagcga
     1381 gacggattct tccggggtga gtccgcgctg caagcagtag aagagttgct cgtcggaaat
     1441 tttcgaggct gtggcttcat gttcgacgcg cgcggtggaa tttcgcgtgt cgatataggg
     1501 gatggcatgg gcgccgcagc tcttgccgat gagcaaagag tcgcattgcg tgtagttgcg
     1561 cgcggccgcc gcacccggca tgatctttac cgccccccgg taggtgttct gcccgtggcc
     1621 tgcggaaatg cccttggaga tgatcgtgga gcggctgttg cggccgagat ggatcatctt
     1681 cgtgccggta tcggcctgct gatggttgga agtgacggcg acggaataga attcgccgac
     1741 cgaatcctca ccttccagaa tacagcttgg atatttccag gtgatggctg agccggtttc
     1801 tacctgtgtc caggaaatct tcgaactctt gccccggcat gcgccgcgct tggtgacgaa
     1861 attatagatc ccgcccttgc cgttctcatc gccggggtac cagttctgca cggtggaata
     1921 tttgatttca gccccctcca gcgcgatcag ctcgacgacg gcggcatgga gctggttctc
     1981 gtcccgccgt ggtgcggtac agccttccag ataggaaaca taggcgccgg catcggcgat
     2041 cagtagcgtg cgttcgaact ggccggattt cgcctggttg atgcggaaat aggtggacag
     2101 ctccattggg cagcgcacgc cgggtgggat gtaggcgaag gagccgtcgg agaacacggc
     2161 cgaattgagg gcggagaaga aattatcgcc ctgcggcacg accgaaccga gatatttttg
     2221 cacgagatcg ggatgctcgc gcaccgcctc gccgaaggag cagaagatga tgccttgcgc
     2281 cgccagcgtg tccttgaagg tggtcgcgac cgagacgctg tcgaacaccg catcaacggc
     2341 gatgccggcc agggccgcgc gctcgcccag cgggataccg agcttctcgt aggttttcag
     2401 aagttcggga tcgacctcat cgagcgattt cggcccttcg gcatttttgg gcgcggcata
     2461 ataggtggca ccctgataat cgatgggggc gatgttgagc ctggcccaat cgggctgctg
     2521 catcgtctgc cagcggcgga aggctttcag gcgccattcc agcagccaga gcggctcctg
     2581 tttcttggca gaaatgaaac gaactgtgtc ctcggtcagg cctggcggcg cggtatcaac
     2641 gtcgatttca gttacgaaac cgtacttata gctgtcgcca ccgccagcgg tgatctgctc
     2701 gatcgtgtcc agatgcgcac tcataccagc tccactctcc atccggtctg ggtggataac
     2761 tgcaagtgct gtgccagcgt cgcgcggccg gattgtcggc ttcagccatc gctgcagccg
     2821 ctgtttgtcg tcttgccgac agtcgaactt gcgacatgga cgcattcgcc cggggcgagc
     2881 tctgccggca ctgcgccgcc ataggccgta ccggcgtcat gcgggttgcc tggctggttg
     2941 cgcatccagt ccgcgagctt gacgaagttt tcggtcaggg tggcacgggc ggtgtcatcc
     3001 gccacggtgg cggcaagagc gcgggacatg cagcccatcc agtcatcgcg ctcgtgcgcg
     3061 ccaatgcgga tatgcatgtg ccggcggcgc aggcgcggat ggcctttggt ggcagaataa
     3121 tcggcggggc cgccggtcca ttccgcgaga tagagtttca gcacgtcgcg cgttgcgccg
     3181 agatcgggcg cgtgcagggc acgcagggcg gcgaattcgg gacgtcgctc catcagatcg
     3241 taaaattcat ccaccaaccg cgcgatgccc ggcgtgccgc cgaggcgggt gaataaagcg
     3301 ggctcggtca tatctttctc cttcattctt cgccggccag ggcggtggct ttgacctggg
     3361 cgaaaacctc ctggccggtt tgcagtgcca gttggttcca ggatttccgc gtgatgcgcg
     3421 cgagcagcct tgtgccgccg atatctaatg ccaccaccac atggggcgcg cccgtcatct
     3481 ccaccgcgag gatgcgcgcg ggcagggtgt tgaggataga gctcggcacg ggctggcgca
     3541 ggaggctgac atcgctggcg aggatgcgca cgcgcgcgcg cgcgcccacc gccgcaggct
     3601 ggcccggaag ggtgaggatg agcggtgcgc tgccgcagag ggtgaggccg taagcagcat
     3661 catggccgag taccggcaaa tcgagcacgg tggccgcccc cagccggctg gcgaggggga
     3721 acgaaaaatc ggtaagcagc gtggcgagcg ggccggatgc ggc
//
LOCUS       DASQCV010000140         3707 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3178055, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000140 DASQCV010000000
VERSION     DASQCV010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3707
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3178055"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3268)
                     /gene="dnaE"
                     /locus_tag="VEQ16_02090"
     CDS             complement(<1..3268)
                     /gene="dnaE"
                     /locus_tag="VEQ16_02090"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HYP62646.1"
                     /translation="MPHADFVHLRVHSAFSLSEGAIKPDKIVALAKAYGMPAVAITDS
                     SNMFGALEFSQYCSGAGVQPIIGCQLGLARAGVNLPPDNVVALAQNEAGYANLQRLTS
                     LSFLEGDGVKPQITREMLLAHAEGLFLLTGGAGGPIGRLLAEGQLAEAEEYLHVLAEA
                     FPGRIAVELQRHGDKLEQAIEPGFLTLAEQLDLPIVATNECFFAGSKMAEPHDALLCI
                     AEGRVLAEPDRRRVTPEHWFKPAAEMRALFADLPEACDNTLAIARSCAVMAPSRKPLL
                     PTCPKVREGATEADTVRAMAEEGLRARLDAEGIAEEARGEYRDRLEFELGIIIQMGFP
                     GYFLIVADFIQWAKEQKIPVGPGRGSGAGSLVAWALRITDLNPLRYGLLFERFLNPER
                     VSMPDFDIDFCQERRDEVINYVVREYGAERVAQIITFGKLQARAAVRDVGRVLGLPYG
                     QVNKVAELIPNNPAKPVTLKEAIEGEPKLQDLRDADEGNARLMEVAQQIEGLYRHAST
                     HAAGVVIGDRPLVELVPLYKDPRSELLVTQYSMKYVEQAGLVKFDFLGLTTLTVIDRA
                     LKFLREQGVDLDISSIPLDDKKTYEMVGRGDTAGVFTFETAGYRSALQQMRPDRFEDL
                     VAIQALNRPGPMANIPDYCARKRGAPWEAPDKAIHEILAETYGIIVYQEQVMQIAQIM
                     AGYSLAGADLLRRAMGKKIRAEMDKQREIFCEGALKQGFTQEKANEIFDLMAKFADYG
                     FNKSHAAAYALVSYQTAYLRANHPVAFLAACMSLSIANTDKIALLRADALRIGIKVLP
                     PDINKSGADFRPEQLEDGEYGIRYALGAIKRVGVGAMEELARVRGRKPFKDISDFAAR
                     IDAKTLTRAQIEILAKAGAFDSLEKNRAKIFSGSETIMRTAQAGAAERESGQIGLFGG
                     GEPEVLRLPAIPDWPDSERLTFEAEAIGFHVSAHPLDVYAQALKRLDVVPSAAIQRRA
                     EAGAARVRLAGILGAKKERITRTGSRMMWATLSDVQGAFEVTLFSEVLGRSRDLLEDG
                     AALLVTADIRMDGESLRITATDVSPLDRAAAEAGAGIKIWLDSTEAVPHIKLLLEREG
                     R"
     gene            3321..>3707
                     /locus_tag="VEQ16_02095"
     CDS             3321..>3707
                     /locus_tag="VEQ16_02095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62647.1"
                     /translation="MAHMLAALQERRRAYAKFAWPMLLYGLGGASWLAIAVVYLGRLL
                     ERFRLLLANAPPLNTPLCGNAQCDFSMFWPAGLMARAHRFAELYQIQPFELFRQHVLS
                     PGARVLCWIYPPPTLMLITPFSFLPFD"
BASE COUNT          670 a         1175 c         1164 g          698 t
ORIGIN      
        1 cgcgtccctc acgctccagc agaagcttga tgtgcggcac ggcctcggtt gaatcgagcc
       61 agatttttat gcccgccccg gcctcggcgg cggcgcggtc cagaggcgag acatccgtgg
      121 cggtgatgcg cagcgactcg ccatccatgc ggatatcggc ggtgacaagc agggccgcgc
      181 catcttccag aagatcgcgc gagcggccga gaacttctga aaacagcgtg acttcgaaag
      241 cgccctgcac atccgacaaa gtggcccaca tcatgcggct gccggtgcgg gtgatgcgct
      301 ctttcttggc accgagaatc ccggccaggc gcacgcgcgc ggcgccggct tcggcgcggc
      361 gctggatggc ggcggagggc acgacatcga ggcgtttcag tgcctgggca tagacatcga
      421 gcggatgcgc ggagacgtgg aagccgatgg cttcggcctc gaaggtgagg cgttcggaat
      481 ccggccagtc cgggatggcg ggcaagcgca aaacctccgg ctcgccgcca ccgaacaggc
      541 cgatctgccc gctctcgcgc tcggcagcac cagcctgggc ggtgcgcatg atggtttcgc
      601 tgccagagaa tatttttgct ctgtttttct ccagggaatc aaacgcgccg gccttggcca
      661 aaatctcgat ttgcgcgcgc gtgagggttt tcgcgtcgat gcgcgcggcg aaatcagaaa
      721 tgtccttgaa cggctttctg ccacggacac gagccaattc ctccatggcg ccaacaccga
      781 cgcgcttgat agcgccgagc gcgtagcgga tgccgtattc gccatcctca agctgctcag
      841 gccggaaatc ggcgcccgat ttattgatgt ccggcggcag tacctttatg ccaatacgta
      901 gcgcatccgc gcgcagtagc gcgatcttgt ccgtattggc gatggagagc gacatacagg
      961 cggcgagaaa ggcgaccgga tggttggcgc gcaaataggc cgtctggtag gagaccagcg
     1021 cgtaagcggc agcgtgcgat ttgttgaagc cataatcggc gaatttcgcc atcaggtcga
     1081 aaatctcgtt ggctttttcc tgggtaaaac cctgtttcag cgcgccttcg cagaaaatct
     1141 cgcgctgctt gtccatctcg gcgcggattt tcttgcccat ggcgcggcgc agcagatcgg
     1201 ccccggcgag cgaatagccg gccatgatct gggcgatctg catcacctgt tcctggtaga
     1261 cgatgatgcc gtaggtttcc gcgagaatct cgtgaatcgc cttgtccggc gcttcccagg
     1321 gcgcgccgcg cttgcgggcg caataatcgg ggatgttggc catcgggcca ggacgattga
     1381 gggcctggat ggcaacaagg tcttcgaacc ggtccgggcg catctgctgc aaggcggagc
     1441 ggtaacccgc ggtttcaaac gtaaacacac cggccgtatc accgcggccg accatctcgt
     1501 aggttttctt atcatctagc gggatgctgg aaatatccag atcgaccccc tgctcgcgca
     1561 ggaatttcag cgcccggtcg atgacggtga gggtggtgag accgaggaag tcgaacttca
     1621 ccagccccgc ctgctcgaca tatttcatcg aatattgcgt gacgagaagc tcggagcgcg
     1681 gatccttgta gagcggcacc agctccacca gcgggcggtc gccgatgacc acgccggcgg
     1741 catgggtgga agcatggcgg tagaggccct cgatctgctg cgcgacttcc atcaaccgcg
     1801 cattgccttc atcggcatcg cgcaaatcct gaagttttgg ctcgccctct atggcttcct
     1861 tcagcgtgac gggtttagcc gggttgttgg ggatcagctc cgcgaccttg ttgacctggc
     1921 cataaggcaa gcccagcacg cgccccacat cgcgcaccgc ggcgcgcgcc tgcagcttac
     1981 cgaaggtgat gatttgcgcg acacgctcgg cgccatattc gcgcacgacg taattgatga
     2041 cctcgtcacg ccgttcctgg cagaaatcga tatcgaagtc cggcatgctc acacgttccg
     2101 gattcaggaa gcgctcgaac agcaggccgt agcgtaacgg attcagatcg gtgatgcgca
     2161 gcgcccaggc cacgagcgag ccggcgcccg aaccgcggcc ggggccaacg ggaattttct
     2221 gctcctttgc ccattgaatg aaatcggcca cgatgaggaa gtagcccgga aaccccatct
     2281 ggatgatgat gccgagctcg aattccagcc ggtcgcgata ttcgccgcgc gcctcttccg
     2341 cgatgccctc cgcatccagc cgcgcgcgca aaccttcctc ggccatggcg cgcaccgtat
     2401 ccgcctcggt ggcgccttcg cgcactttcg ggcaagtggg cagaagcggc ttgcgcgagg
     2461 gcgccatcac cgcgcagctg cgcgcgatag cgagcgtgtt gtcgcatgcc tccggcagat
     2521 cggcgaacaa agcgcgcatc tcggcggcgg gcttgaacca atgctcgggc gtgacgcggc
     2581 ggcggtccgg ctcggccagc acgcggcctt cggcgatgca gagcagggca tcatgcggct
     2641 cggccatttt tgatccggcg aagaagcatt cattcgtggc gacgatgggc aggtccagtt
     2701 gctcagccag cgtcaggaaa ccgggctcga tggcctgttc aagcttatcg ccatggcgtt
     2761 gcagctccac cgcaatgcgg cccggaaagg cctcggcgag gacatgcaga tactcttccg
     2821 cctcggccag ttgcccttcc gccagcagcc gcccgatggg cccgccggcg ccgccggtga
     2881 ggagaaacag cccctctgca tgggccagta gcatctcgcg cgtaatttgc ggctttaccc
     2941 cgtccccttc caggaagctg agcgaggtga ggcgctgcag attggcatag cccgcctcgt
     3001 tctgcgccag cgccaccaca ttgtccggcg gtagattgac cccggcgcgg gccaggccga
     3061 gctggcagcc aatgatgggc tgcactccgg cgccagaaca atattgcgag aattccagcg
     3121 ccccgaacat gttcgaactg tccgtgatgg ccaccgccgg catgccatac gccttggcca
     3181 acgccacgat cttgtccggc ttgatggcgc cctcggagag ggagaaggcg gaatggacgc
     3241 gtagatgcac gaaatcggcg tggggcatgg agactcctga gggccggctg agcttgccca
     3301 gcccaatagc gcaatgcaat atggcccata tgctcgccgc tttacaggaa cgccgccgcg
     3361 cttacgcgaa attcgcctgg cccatgctgc tttacgggct gggcggggca tcctggctgg
     3421 caatcgccgt tgtctatctg ggccgcctgc tggaacggtt ccggctgctc ctggccaacg
     3481 cgccgccgct caacacgccg ctctgcggca acgcgcaatg cgatttctcg atgttctggc
     3541 cggcagggct gatggcccgc gcccatcgtt tcgccgaact gtaccagatc cagccctttg
     3601 aactcttccg ccagcatgtg ctgagcccgg gggcgcgcgt tctctgctgg atctatccgc
     3661 cgccgacatt gatgctcatc acgccgtttt cgtttctgcc gttcgat
//
LOCUS       DASQCV010000141         1575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_856873, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000141 DASQCV010000000
VERSION     DASQCV010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_856873"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /locus_tag="VEQ16_02100"
     CDS             complement(<1..584)
                     /locus_tag="VEQ16_02100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019463325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase zinc-finger binding
                     domain-containing protein"
                     /protein_id="HYP62648.1"
                     /translation="MRMLLDPAQLPGDIALLKAMLIEENRRATEAEARASDLDAEIEN
                     LKLQIAKLRHARFGNSSERTSVLLDQLELQLGELVERRAQETAAQEIAALKAQASGKA
                     PPRRRSNPVRRPLPDHLPRERVVLPSRQACPCCGGRLRKLGEDVTETLERVPARWKVV
                     QYVREKMTCRSCEAITQPPAPSHPIARGRGGPQLL"
     gene            complement(677..1018)
                     /gene="tnpB"
                     /locus_tag="VEQ16_02105"
     CDS             complement(677..1018)
                     /gene="tnpB"
                     /locus_tag="VEQ16_02105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008491906.1"
                     /note="TnpB, as the term is used for proteins encoded by
                     IS66 family insertion elements, is considered an accessory
                     protein, since TnpC, encoded by a neighboring gene, is a
                     DDE family transposase; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HYP62649.1"
                     /translation="MANGPVRVWLATGHTDMRKGFSSLAVLVQEKLKQDPHAGHLFVF
                     GGRRGDLIKVIWHDGHGACLFSKRLERGRFIWPTPAGDAVTISAAQLGDMLEGIDWRA
                     PQHTWRPEIAG"
     gene            complement(1039..1185)
                     /locus_tag="VEQ16_02110"
     CDS             complement(1039..1185)
                     /locus_tag="VEQ16_02110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62650.1"
                     /translation="MLPPPEAPAPAKPGTIEIVIAGGRTVRVGADFDTAALVRIVAAL
                     EAGR"
BASE COUNT          272 a          532 c          480 g          291 t
ORIGIN      
        1 agcagctgcg ggccgccccg tccgcgtgca atcggatggg acggcgcggg cggctgtgtg
       61 atcgcctcac agctgcggca ggtcattttc tcccgcacat actgaaccac tttccagcgc
      121 gccggcaccc gctccagcgt ctcggtcacg tcctctccca gcttgcgcag ccgcccgcca
      181 cagcaggggc aggcctgccg cgacggcagc accacgcgct cgcggggaag atgatccggc
      241 agtggacggc gcaccgggtt gctccggcgt cttggtggcg cctttcccga tgcttgagct
      301 ttaagcgccg caatctcctg agcggccgtc tcctgcgccc ggcgttccac cagctcgccc
      361 agctgaagtt cgagctggtc caacagaacg gaggtgcgct cggaggaatt tccgaaccgg
      421 gcgtgccgga gtttggcgat ttggagcttg aggttctcga tctcggcatc gagatcgctg
      481 gcgcgggctt cggcttcggt agcgcgcctg ttttcttcga ttagcatcgc tttcagcaac
      541 gcaatatcgc cgggaagctg tgcgggatcg agaagcatgc gcatcacgat agctgcttcg
      601 cattcccgcc ggataggggt acggcgatta ttccgcaacg agtcctctgc gccacaccgc
      661 tttgcggcca aagccatcac cccgcgatct ctggccgcca cgtatgctgc ggtgcccgcc
      721 aatcgatgcc ctcaagcatg tcgccaagct gtgctgccga aatcgtcact gcatctccgg
      781 ccggtgtagg ccagatgaag cggccgcgtt cgagccgctt ggagaagagg catgcgccgt
      841 gaccgtcatg ccagatcacc ttgataagat cgccccggcg ccccccgaag acaaagagat
      901 ggccggcatg cgggtcctgc ttcagcttct cttgcaccag cacagccaat gacgagaagc
      961 ctttacgcat atcggtgtgc cccgttgcca gccacacgcg cacagggcca ttggcgatgg
     1021 tctgcgccgg aaccgggatc accggccagc ttccagcgcc gcgacgatgc gcacgagcgc
     1081 agctgtatcg aaatcggcgc caactcgcac tgtgcgtccg ccggcgatca cgatctctat
     1141 ggtgccgggc ttggccggcg caggcgcctc tgggggcgga agcatcacgg gcacaaagcg
     1201 ctgtggaggc ggcggagtag acgccggcac gccgctatcc ggctccatgg gcgctgtgca
     1261 gcctgacttg gctttgaggt tgcgccgcca ccggaacagc aggcccggat tgagaccatg
     1321 ccgccgcgcc acccgcgata cagaggcccc ggagacttca acttcagcga caatcgcccg
     1381 tttctgcgct tggctccagc ttctccgcgt gctcgcaaca acatcgaagc gtggcgtaac
     1441 cctatctcca gacatactgc cgccctatct ccagctccct ctttcctgga ggtaagagcc
     1501 tctatcgccg ccgttcgcac aaggcggcct tccccggatg cttactgatg aattctgggg
     1561 gaagcggaat aactt
//
LOCUS       DASQCV010000142         2185 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1686154, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000142 DASQCV010000000
VERSION     DASQCV010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2185
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1686154"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..597
                     /locus_tag="VEQ16_02115"
     CDS             <1..597
                     /locus_tag="VEQ16_02115"
                     /inference="COORDINATES: protein motif:HMM:NF013593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62651.1"
                     /translation="GIAALGYTMQRPGADKFLMSQREMLDRLTVLLGGRAAESLIFED
                     VSTGAADDLMRATDIARDMVVRFGMDPRLGQVTYEPETPHMLTSGGMMDMRPRRYSET
                     TATAIDAAILALIDGAYQRARAILTQNLPLLREAAAELLAHETISGAALDGIAARVAL
                     ATDRRGNILKLGKSSATPGIAADTNADQHQPSAGTPRA"
     gene            complement(527..958)
                     /locus_tag="VEQ16_02120"
     CDS             complement(527..958)
                     /locus_tag="VEQ16_02120"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HYP62652.1"
                     /translation="MKMGIMSAPPGAADLSVLAMPRGFIREDRNWPSGGARGRRIQAV
                     QDWILEHLPLEHSVSALAGRAAMSVRHFARVFREETGLTPGQFVELARVNMARILLEG
                     SEMPLKRVAAQSGFVNATVMRAAFRRWVGVGPRLYRLQCRA"
     gene            complement(955..1785)
                     /locus_tag="VEQ16_02125"
     CDS             complement(955..1785)
                     /locus_tag="VEQ16_02125"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HYP62653.1"
                     /translation="MNGLGIERLCVFGMPPVEMVPLAADLGCIGVGIALTPMRRFNPH
                     HYPDWSLREDAGLRREMIAVMRDRGVRITLLEGFGIAPGRDVRDYAHDLDLLCELGGE
                     RINLVSVEPDMQRTIEGFATMAAMAAERGLQVSTEIGPGPINGLEAALRLLREIAAPN
                     LSLLIDTMHYFRFGGTIEALAALAPGTIGYVQLCDVPLVSPFASYMDEALHERMVPGE
                     GELPLAELAALVPEDVVVSLEVPRRALAEQGVEPMARVRPCVEAARALLRDVRGGKTA
                     "
     gene            1864..>2185
                     /locus_tag="VEQ16_02130"
     CDS             1864..>2185
                     /locus_tag="VEQ16_02130"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HYP62654.1"
                     /translation="MNESHMKAVVVGTGFGCRIHVPALRAAGFEVAALVGTRPDRLAR
                     KAAESNVPAFFTDLDEAITQTGARLVTVATTPATHAKLAQAAIKRGCHVLCEKPFAFD
                     AAEGQ"
BASE COUNT          406 a          774 c          672 g          333 t
ORIGIN      
        1 ggcatcgcgg cactcggcta caccatgcag cggcccggcg cggacaaatt cctgatgagc
       61 cagcgcgaga tgctcgaccg cttgaccgtg ctgctcggcg gccgcgccgc ggaatcgctc
      121 atcttcgagg atgtctcgac cggtgccgcg gatgatctca tgcgcgcgac ggatatcgcc
      181 cgcgacatgg tggtgcgctt cggcatggac cccaggctcg gccaggtgac ctatgagccg
      241 gagacgccgc atatgctcac ctcgggcggc atgatggaca tgcggccgcg gcgctatagc
      301 gagaccacgg caacggcgat cgacgcggcg atcctggcgc tgatcgatgg cgcctatcag
      361 cgcgcccggg ccattctcac gcagaatctg ccattgctcc gcgaggcggc ggcggagctg
      421 ctcgcgcatg aaaccatctc cggcgcggcc ctggacggca tcgccgcgcg cgtcgcattg
      481 gccacggaca ggcgcggcaa tatcctaaag ctgggcaaaa gcagcgctac gcccggcatt
      541 gcagccgata caaacgcgga ccaacaccaa cccagcgccg gaacgccgcg cgcatgaccg
      601 ttgcgttcac gaagccgctc tgcgccgcca cgcgcttcag cggcatttct gatccttcca
      661 gcaatatcct cgccatgttg acacgcgcca gctcgacgaa ctgtcccggc gtcaaccccg
      721 tttcctcgcg gaacacacgc gcgaaatgac gcacgctcat cgccgcccgg ccggccaggg
      781 cgctcacgct atgctccagc ggcaaatgct ccagaatcca gtcctgcacc gcctggatac
      841 gccttccgcg cgcgccgcca gatggccagt ttctgtcttc gcggataaag ccacgaggca
      901 tggccagcac ggataaatcc gccgcgcccg gcggcgcgct cattatgccc atcttcatgc
      961 tgtttttcct cctctcacat cgcgcagcag cgcccgcgcc gcctcgacac aggggcgcac
     1021 gcgcgccatc ggctccacgc cctgttccgc cagcgcgcgc ctgggcactt ccaaactgac
     1081 caccacatcc tccggcacga gagcggccaa ttcggccaaa ggcagctcgc cctcgccagg
     1141 caccatgcgc tcatgcagcg cctcgtccat gtaggaggcg aaaggcgaga caagcggcac
     1201 gtcgcagagc tggacatagc cgatggtccc cggtgccaaa gccgcgagcg cctcgatggt
     1261 gccgccgaaa cggaaataat gcatcgtgtc gatcagcagc gacagattcg gcgcggcaat
     1321 ttcccgcagc agcctcagtg ccgcctccag cccgttgatg gggccggggc cgatttccgt
     1381 gctcacctgc agcccgcgct cagccgccat cgcggccatg gtggcgaagc cctcgatggt
     1441 gcgctgcatg tctggctcga cgctcaccag attgatgcgc tcgccgccca gctcgcacag
     1501 caaatcgaga tcatgggcgt aatcccgcac atcccgcccg ggcgcgatgc cgaatccttc
     1561 cagcagcgtg atgcgcacgc cgcggtcacg catcacggcg atcatctccc gccgcaggcc
     1621 agcatcctcg cgcaacgacc agtccggata atgatgcggg ttgaagcggc gcatcggcgt
     1681 cagggcgatg ccgacgccga tgcagccgag atcggccgcg agcggcacca tctcgaccgg
     1741 tggcatgccg aaaacgcaca gacgctcgat ccccagccca ttcatggctt gcacatcctc
     1801 ctgaatgggt agatagtgat tactatctaa gataaaatca agacggcaaa tgaggagggg
     1861 cgcatgaacg agtcgcatat gaaggccgtg gtggtgggca ccggctttgg ctgccgcatc
     1921 catgtgccgg cgctgcgcgc ggcggggttc gaggtggcgg cgctggttgg cacacgcccg
     1981 gaccggctgg cccgcaaggc ggcggagagc aacgtgccgg ccttcttcac cgacctggac
     2041 gaggcaatca cccagaccgg cgcgcggctg gtgacggtgg cgaccacccc agccacccat
     2101 gcgaaactgg cccaggccgc catcaaacgc ggctgccatg tgctgtgcga aaaacccttc
     2161 gccttcgatg ccgccgaggg gcagg
//
LOCUS       DASQCV010000143         2109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_525552, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000143 DASQCV010000000
VERSION     DASQCV010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_525552"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..483)
                     /locus_tag="VEQ16_02135"
     CDS             complement(28..483)
                     /locus_tag="VEQ16_02135"
                     /inference="COORDINATES: protein motif:HMM:NF023123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3291 domain-containing protein"
                     /protein_id="HYP62655.1"
                     /translation="MPLISVTRLRIRSVRFLPLFARQAFLSLRQARQARGFLGGALSA
                     ERRWTFWTVTSWDGEASMRAFMVAGSHGAAMTRLAEWCDEASVVHWVQADAILPSLAE
                     ADQRMRQIGRPSRVRHPSQFHANLSYEPPRMTRALPIQPARPERRPAKL"
     gene            671..1387
                     /locus_tag="VEQ16_02140"
     CDS             671..1387
                     /locus_tag="VEQ16_02140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012976602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HYP62656.1"
                     /translation="MSNETTPEAYFAQFGEIETVKRTRFQKIVAKTMTANASTIPHVT
                     HQDDADVTGLMAYRETMAPGTKVSPLIFLIKAVVEALKAYPQFNASLTPDGETLVLKK
                     FFHIGIAVDGPLGLLVPVLRDADQKDIQTLAAELKDVSALARSKGLPLDKMQGGCFSI
                     SSLGGIGGTYFTPIINAPEVAILGVTGVQTRPVWNGHEFLPRQILPLSLSYDHRVING
                     ADAARFVRKIAAGLTQWDAA"
     gene            1458..>2109
                     /locus_tag="VEQ16_02145"
     CDS             1458..>2109
                     /locus_tag="VEQ16_02145"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP62657.1"
                     /translation="MAIARRKALITGASGGMGRACARLFGTTQDLVLTDASPKLGAFA
                     EELAAEGYTVRGAHTGDLGDKTLLDGIMADMKGELPLTLIHTAGLSPSIANAESIMQV
                     NLVATVKLLDVIEPFLRPGAAAVLIASTAGHLVPPIPDALALLANPLAPDFMAKISAL
                     MQGISQGDAEKLPGISYSLSKQAVLALTQRRALSWGPLGARITSISPGMILTPMGRK"
BASE COUNT          378 a          729 c          652 g          350 t
ORIGIN      
        1 cgccgcgcat gacgcgggcg ctgcccgcta cagcttggcg ggcctccgtt ccggcctggc
       61 cggctgtatg ggcagcgccc gcgtcatgcg cggcggctcg tagctgaggt tcgcgtgaaa
      121 ctggctcgga tgcctcaccc gtgagggccg gccaatctgg cgcatccgtt ggtccgcctc
      181 cgccagggag ggcaggatcg cgtccgcctg cacccaatgc accacggagg cctcgtcgca
      241 ccattccgcc aggcgcgtca tggcagcgcc atgggagcca gcgaccatga acgccctcat
      301 gctcgcctcg ccatcccagg acgtcacagt ccagaaggtc cagcgccgct cggcggacaa
      361 ggcgccgccc agaaagccgc gtgcctgccg cgcctgccgc aggctgagga aagcctgccg
      421 cgcaaaaagc ggcaggaagc ggactgaacg tatccgcagc cgcgtgacgc tgatgagggg
      481 catatccgtc tcccggaagc ctggacgccc ctcaagctgg ggagtgatcc aagaatgtca
      541 aaccgccctc cgccttgttt cacctccctt gtttcaccgc cccggcgatg acatcctccc
      601 ccaaagcgcg acggcttgac caggtggagc ctctgaggaa agcctcgccc cggattggct
      661 ggagaaaaat gtgagcaacg agacgacgcc cgaggcctat ttcgcgcaat ttggcgagat
      721 cgagacggtg aagcggaccc gcttccagaa gatcgtggcc aagaccatga cggcgaatgc
      781 cagcaccatt ccgcatgtca cgcaccaaga cgacgccgac gtgaccgggc tgatggccta
      841 tcgcgaaacc atggcgcccg gcacaaaagt ctcgccgctg atcttcctga tcaaggcggt
      901 ggtggaggcg ttgaaggcct atccgcaatt caacgcctcg ctcaccccgg atggcgagac
      961 tttggtgctg aagaaattct tccatattgg catcgccgtg gatggaccgc tcggcctgct
     1021 cgtgccggtg ctgcgcgacg ccgaccagaa ggatatccag accctcgccg cggagctgaa
     1081 ggacgtgtcc gcgctcgccc gctcgaaagg cctgccgctc gataagatgc agggtggctg
     1141 cttctccatc tcatcgctgg gcggcattgg cggcacctat ttcaccccca tcatcaacgc
     1201 gccggaggtg gcgatattgg gcgtgaccgg cgtgcagacc cggccggtgt ggaacgggca
     1261 tgaattcctg ccccggcaga tcctgccttt gtcgctgagc tatgaccacc gcgtcatcaa
     1321 cggggccgat gcggcgcgct tcgtgcgcaa gatcgccgcc ggcctgacgc agtgggacgc
     1381 ggcctgattt tctgctcccc ccgcccggcg aacaggcggg ggacgccaca taaccaaaat
     1441 cattagggag agcgcgcatg gcgatcgcac ggcggaaggc tttgattacc ggggcttcag
     1501 gcggcatggg ccgggcctgt gcccgcctgt tcggcaccac gcaggatctg gtgctcaccg
     1561 atgcctcccc caaactcggc gccttcgccg aggagctagc ggcggagggt tataccgtgc
     1621 gcggcgccca taccggcgac ctgggcgaca aaacgctgct tgacggcatc atggccgaca
     1681 tgaaaggcga gcttcctctc accctcatcc atacggccgg gctctcaccc tccatcgcca
     1741 atgccgaatc catcatgcag gtgaatctgg tggcaacggt caaattgctg gacgtcatcg
     1801 agccctttct ccgccccggc gcagccgccg tgctcatcgc ctccaccgcc gggcatctcg
     1861 tgccgcctat cccggacgct ctggccctct tggccaaccc gctggcgccg gatttcatgg
     1921 ccaagatcag cgcgctgatg cagggcatat cgcagggcga tgcggaaaaa ctgcccggca
     1981 tctcctattc gctcagcaag caggcggtgc tcgccctcac tcagcgccgc gccctcagct
     2041 ggggacctct gggcgcgcgc atcacctcca tctcgccggg catgatcctg acgccgatgg
     2101 ggcgcaaag
//
LOCUS       DASQCV010000144         1714 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1354720, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000144 DASQCV010000000
VERSION     DASQCV010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1714
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1354720"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..401
                     /locus_tag="VEQ16_02150"
     CDS             <1..401
                     /locus_tag="VEQ16_02150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HYP62658.1"
                     /translation="IPGAAEMLREVTDRGIDWRIASNSSDEEMAVKFARTGLSALTAG
                     RAHSAASVIARGGRAKPAPDLFLAAAASAGVAPERCIVLEDSTLGVTGAVAAGMVCYG
                     FAPHGNGETLLAAGAREIFTRLDEILGVFP"
     gene            398..844
                     /gene="hemJ"
                     /locus_tag="VEQ16_02155"
     CDS             398..844
                     /gene="hemJ"
                     /locus_tag="VEQ16_02155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HYP62659.1"
                     /translation="MTIAALAPWFRWFLAFHIISFTSWMAGMFYLPRLYVYHCQTTPG
                     TAESERFKVMEVKLLRLIINPAMIATFIFGILLVLTPGAVDWHAAWWWTKLVAVLLMT
                     GFHGALSRWRKDFLNDRNTRPEKFYRIANEIPTILFIIIVLAVIVR"
     gene            987..>1714
                     /locus_tag="VEQ16_02160"
     CDS             987..>1714
                     /locus_tag="VEQ16_02160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020593791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HYP62660.1"
                     /translation="MRAAAELGISTIAIYPEHDKLSLHRFKADEAYLIGRGKGPIEAY
                     LSIDEVIRVAKLARADAIHPGYGFLSENPEFAEACAAAGITFIGPKPETMRQLGNKVA
                     ARNLAISVGVPVMPATDPLPYDDDTVKRLAADIGYPVMLKASWGGGGRGMRPIESEEG
                     LLDSVAAARREAKAAFGNDEVYLEKLVRRAFHVEVQLLGDSHGNLVHLFERDCSIQRR
                     HQKVIERAPAPYMDDETREALCNAA"
BASE COUNT          310 a          598 c          479 g          327 t
ORIGIN      
        1 tcatccccgg tgccgcggaa atgctgcgcg aggtcacgga ccgtggcata gactggcgta
       61 tcgcctccaa ctcctcggat gaggaaatgg cggtcaaatt cgcccgcacc ggcctctcag
      121 ccctcaccgc cggccgcgcc cattccgccg ccagcgtcat cgcccgcggc ggccgtgcca
      181 aaccggcgcc tgatctgttc ctcgccgccg ccgcgtccgc tggcgtggca ccggaacgct
      241 gcatcgtgct cgaggacagc acgcttggcg tgacgggcgc cgtcgccgcc ggcatggtct
      301 gttacggttt tgccccgcat ggcaatggcg aaaccttgct cgccgctggc gcgcgcgaga
      361 ttttcacccg cctcgacgag attctcggag tgttcccatg accatcgccg ccctcgcgcc
      421 ctggttccgc tggtttctgg ctttccacat catcagcttt accagctgga tggccggcat
      481 gttctatctg ccccggctct atgtgtatca ttgccagacc acgcccggca cggcggaatc
      541 cgagcgtttc aaggtgatgg aggtgaaact cctgcgcctc atcatcaatc cggcgatgat
      601 cgccaccttc attttcggta tcctgctcgt ccttacgcct ggcgcggtgg attggcacgc
      661 tgcctggtgg tggacgaagc tcgtggctgt gcttctgatg accggcttcc acggcgccct
      721 ctcgcgctgg cgcaaggatt tcctcaatga ccgcaacacg cgcccggaaa aattctaccg
      781 catcgccaat gaaatcccca cgatcctgtt catcatcatc gtgctggcag tgattgtccg
      841 gtaacggccc gcgtgatttg ccggaaatag acaattatcg ttaaatccgc ccccaggccg
      901 gtgcaaaatt ccggcaggag agtagagacg tgcaaaaatt caagcgcctt ctggtggcca
      961 accggtctga aatcgccatc cgcgtcatgc gcgcggcggc ggagctgggc atttccacca
     1021 tcgccatcta tcccgagcac gacaagctct cgcttcatcg cttcaaggcg gacgaggcct
     1081 atctcatcgg ccgcggtaaa ggccccatcg aggcctatct ctccatcgac gaagtcatac
     1141 gcgtcgccaa gctcgctaga gccgacgcca tccatcccgg ttatggcttc ctctccgaaa
     1201 accccgaatt cgccgaagcc tgcgccgccg cgggcattac attcatcggc ccaaaaccgg
     1261 aaaccatgcg ccagctcggc aacaaggttg ccgcccgcaa tctcgccatc tccgttggcg
     1321 tacccgtcat gccagcgacg gacccgcttc cttatgatga cgacacggta aaacgccttg
     1381 ccgccgacat cggctatccc gtgatgctga aagcaagctg gggcggcggc gggcgcggca
     1441 tgcgcccgat cgagagcgag gagggcctgc tcgactcagt cgccgccgcc cgccgcgaag
     1501 cgaaagccgc cttcggtaat gacgaggtct atctcgaaaa actcgtgcgc cgcgccttcc
     1561 atgtcgaggt ccagctgctc ggcgattccc atggcaatct cgtgcatctg ttcgagcgcg
     1621 actgctccat ccagcgccgc caccagaaag tcatcgagcg cgcccccgcg ccctacatgg
     1681 atgacgaaac gcgcgaggcg ctctgcaacg ccgc
//
LOCUS       DASQCV010000145         2823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2183776, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000145 DASQCV010000000
VERSION     DASQCV010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2183776"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2348)
                     /locus_tag="VEQ16_02165"
     CDS             complement(<1..2348)
                     /locus_tag="VEQ16_02165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012813013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase/urea amidolyase family protein"
                     /protein_id="HYP62661.1"
                     /translation="MFRKILIANRGEILVRICRTLKAMNIRSVAIYSDADRFAPGVLA
                     ADEAVRIGPAAAAQSYLNIDAIIEACKQTGAEAVHPGYGFLSERVEFARRLAEAGIAF
                     IGPGEAHLRDFGLKHTARALAETAGVPMLPGSGLIADAREALREAKRITYPVMLKSSA
                     GGGGIGMVLCHNADELAEKFESIGRLAANNFGNAALFLEKYVARARHIEVQIFGDGTG
                     NVVTLGARDCSLQRRNQKIIEEAPAPHISADTLDQLQDAALALARSVAYESAGTVEFV
                     YDSDAQKFYFLEVNTRLQVEHGVTEAIFGADLVEWMIRQAAGEFSLPAQDTLTPKGAA
                     IEARIYAEIPAENFRPASGTITNFAPPPGLRVDTWVESGTEISPFYDPMLAKFIATGA
                     TREEAIANLRAGIEAADISGIETNAGYCHEILNLPDFRAGSMTTRTLAGFDYQPQSIA
                     VLNGGALSSLQSLPGRLGFWEVGIPPSGPMDDKSFTAANALLGNPPGATALELTLTGP
                     TLKFFCPASIALTGAAMEALLDDVPIPHNKPVTVQPGQILSLGAIKGPGQRTYLAIAG
                     GFAAPDYLGSTATFTLGGFGGHNGGALKVGDTLRLAHAPIGAPTVPDLAPLTHDWTID
                     VRYGPHGAPDFFQQSDIDTIFSATYEVHHNSARTGIRLIGPKPAWARADGGEAGLHPS
                     NIHDNAYAVGAIDFTGDMPILLGPDGPSLGGFVCPAVITRYDLWKMGQLKPGDRVKFI
                     RADDEPVILATHGDVTIRRAGDEDLLIEFGEMMLDFELRLRV"
     gene            complement(2361..>2823)
                     /locus_tag="VEQ16_02170"
     CDS             complement(2361..>2823)
                     /locus_tag="VEQ16_02170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1989 domain-containing protein"
                     /protein_id="HYP62662.1"
                     /translation="QDTLAAQAANGGPYYLGTGSVLRSNEGRPMLTLVEDTCGFHDTN
                     AGACSCESNTVRFGHETRFMHACRENFLAELSKYGMGKRDLVSNVNFFMNVPIRPNGE
                     LTVDDGVSEPGGYVTLRAEMDVLVLISNCPQVNNPCNGFKPTPIRIIISEA"
BASE COUNT          524 a          786 c          979 g          534 t
ORIGIN      
        1 tgcacgcgca ggcgcaattc gaaatccagc atcatctcgc cgaattcgat gagcagatcc
       61 tcatcgcccg cgcggcggat ggtgacatcg ccatgggtgg cgaggatgac gggctcgtca
      121 tcggcgcgga tgaattttac acggtcccca ggcttgagct ggcccatttt ccagaggtcg
      181 tatcttgtga tgacggcggg gcagacgaaa ccgccgagcg aggggccgtc tggcccgagc
      241 aggatgggca tgtcgccggt gaaatcgatg gcgccgacgg cataggcatt gtcgtggatg
      301 ttggagggat gcagcccggc ctcgccgcca tcggcacgcg cccaggcggg tttcgggccg
      361 atgaggcgga tgccggtgcg ggcggaatta tggtgcacct cgtaggtggc cgagaaaatc
      421 gtgtcgatat cgctctgctg gaagaaatcc ggcgcgccat gcgggccgta gcggacatcg
      481 atggtccaat catgggtgag gggagcgaga tctggcacgg ttggcgcgcc aatgggggcg
      541 tgggcaagac gcagcgtgtc gccaactttc agcgcgccgc cattatgacc gccaaagccg
      601 ccgagggtga aggtggcggt gctgccgaga taatcgggcg ctgcgaaccc gcctgcgatg
      661 gcaagataag tgcgctggcc ggggcctttg atggcgccga gactgaggat ttgaccgggt
      721 tgcacagtga cgggtttgtt atggggaatg ggcacgtcat cgagcagcgc ttccatcgcc
      781 gcacctgtga gcgcgatgct ggcggggcag aaaaatttga gcgtggggcc ggtgagggtg
      841 agttccagcg ccgtggcgcc gggcgggttg cccagcaaag cgttggcggc ggtaaagctt
      901 ttatcgtcca tggggcctga tggcggtatg cccacttccc aaaagcctag gcgtccaggc
      961 aggctttgca aagaggagag cgcgccgcca ttgagcacgg cgatgctttg cggctggtaa
     1021 tcaaaccccg ccagggtgcg ggttgtcatg gagcccgcgc ggaaatccgg aaggttcaga
     1081 atctcgtggc aataacctgc attggtctcg atgccgctga tatcggcggc ttcgatgccg
     1141 gcgcggagat tggcgatggc ttcctcgcgc gtggcgccgg tggcgatgaa tttggccagc
     1201 atcgggtcgt agaagggcga gatctcggtg ccggattcca cccatgtatc cacccgcagg
     1261 ccgggcggcg gggcaaaatt ggtgatggtg ccgctggccg gccggaaatt ctcagccggg
     1321 atttcggcat agatgcgcgc ctcgatggcg gcacccttgg gtgtaagcgt gtcctgcgcg
     1381 gggagcgaga attctcctgc ggcctggcgg atcatccatt cgacgagatc ggcgccgaag
     1441 atggcctcgg taacgccatg ctccacttgc agacgcgtgt tgacctcgag aaaatagaat
     1501 ttttgcgcgt cggaatcata gacgaattcc accgtgccgg cggattcata cgcgacagag
     1561 cgtgccaggg ccaaggcggc gtcttgcagc tggtccaatg tgtcggcgga aatatgcggt
     1621 gccggggctt cctcgatgat tttctggttg cgccgctgca gcgagcaatc gcgcgcgccg
     1681 agggtgacga cattgcctgt gccgtcgccg aaaatctgca cctcgatgtg ccgggcacgg
     1741 gcgacgtatt tttccagaaa caaagcggca ttgccgaagt tgttggcggc gagccggccg
     1801 atgctttcga atttctccgc tagctcatct gcattatggc acagcaccat gccgataccg
     1861 cccccgccgg cggagctttt caacatgacg ggataggtga tgcgcttcgc ctcgcgcagc
     1921 gcctctcttg catcggcgat cagcccggag ccgggcagca tcggcacgcc ggctgtctcc
     1981 gccaaggcgc gggccgtgtg tttcagcccg aaatcgcgca gatgcgcttc gcctgggccg
     2041 atgaaggcga tgccggcttc agcgaggcgg cgcgcaaatt ccacgcgctc ggaaagaaac
     2101 ccatagccgg gatgcacggc ttcggcgccg gtctgtttgc aggcttcaat gatggcgtcg
     2161 atattgagat agctctgcgc cgccgcggcg gggccgatac gcacagcctc atccgcggcg
     2221 aggacgccgg gggcaaaacg gtcggcatcg gaatagatgg cgacggagcg aatattcatc
     2281 gccttcagcg tgcggcagat gcggaccagg atttcaccgc ggttggcgat gaggattttg
     2341 cggaacatgc gcgtcttccc tcaagcttca gagatgatga tgcggatggg ggtgggtttg
     2401 aaaccgttgc agggattgtt gacttgcggg cagttggaga tgagcaccag cacatccatc
     2461 tccgcgcgca gggtcacata gccgccgggc tcggacacgc catcatccac agtcagctcg
     2521 ccattcgggc ggatgggcac gttcatgaag aaattcacgt tggagacgag gtcgcgctta
     2581 cccatgccgt atttggaaag ctcggcgagg aaattctccc ggcaggcatg catgaagcgc
     2641 gtctcgtggc caaagcgcac ggtgttggat tcgcaggagc aggcgcctgc attcgtgtcg
     2701 tgaaagccgc aagtatcttc taccaaagtc agcatcggcc ggccctcgtt ggagcgcagg
     2761 acggagccgg ttccgagata ataggggccg ccattggcgg cctgggcggc cagtgtgtcc
     2821 tgg
//
LOCUS       DASQCV010000146         4656 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2680859, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000146 DASQCV010000000
VERSION     DASQCV010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4656
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2680859"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..2852
                     /gene="ppc"
                     /locus_tag="VEQ16_02175"
     CDS             72..2852
                     /gene="ppc"
                     /locus_tag="VEQ16_02175"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012978365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HYP62663.1"
                     /translation="MDRLEQTETPEKDAPLRYDIRLLGRILGDTIRAAEGPQTYGLIE
                     TLRQLAVRFHRDQDHTAQAELESILASLSDNEVNLTTRAFGYFSILANIAEDHHHTRR
                     WRAHQIAGSPPREGSLANAIATVRAQSYDDARLKYFFETASITPVLTAHPTEVQRRSI
                     LDILDAIAALLVRRDRLAETKEEYAEIETGLRTLVLTLWQTRTLRQAKLSVLDEVDNA
                     LAFFDATFFAELPRLYESVEKSIGAERLPPFLEIGSWIGGDRDGNPFVDAQVLTEALA
                     LQAERAFGFYIAEARQLRKELPLAALLTNVTPELQALGQDSPDKSEHRADEPYRLALA
                     NIQARLAATHRALLGRQHIGSISSSVRGVSAPPYATPEEFAADLEIIERSLLENGAKL
                     LAQGRLGKLLRAARVFGWTLAPLDLRQNSDVHERVVAELLEIANPGADYLSLDEAARI
                     ALLSAELATSRPLVSRHITYSAETAKELAIFDAARAAHLRYGKRCIRTAIISKCDGVS
                     DMLELAVLLKEAGLLRPAEAALDIDIVPLFETIGDLRAAPATMEAMFSLPVYRQLLAG
                     RGDTQEVMLGYSDSNKDGGFLTSGWELYRAEVGLVEVFNRHDVRIRLFHGRGGSVGRG
                     GGPSYQAILAQPPGAVQGQIRLTEQGEVIAAKYGNAEVGRRNLEVLVSATLVATAEPA
                     HAAPLDPRFTDAFGTLSDHAFAAYRNLVYETPGFEDYFWSSTVITEIAALNLGSRPAS
                     RAKGRSIEDLRAIPWVFSWAQCRVMLPGWYGFGTAVSQFLEEKGPERGLWLLQSMFQD
                     WPVFSTLLMNMDMVMAKADMGIGARYAALVEDAALRDRIFGRIKEEYERTTAHLLAIT
                     GQRALLERNPVLRRSIVNRFPYLDPLNHVQVEMMRRYRVAQDGAGDVSERIRRGVHIS
                     INGIAAALRNSG"
     gene            2934..3188
                     /locus_tag="VEQ16_02180"
     CDS             2934..3188
                     /locus_tag="VEQ16_02180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62664.1"
                     /translation="MQLSRAITGLMTMRLRWMVALGLALALAAVPAAGLAIPGLIPFT
                     AIALLFLGGIQLAAFGIIADYLAFTLPQLQRALEQQRAGA"
     gene            3359..>4656
                     /gene="rfbH"
                     /locus_tag="VEQ16_02185"
     CDS             3359..>4656
                     /gene="rfbH"
                     /locus_tag="VEQ16_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004272502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein RfbH"
                     /protein_id="HYP62665.1"
                     /translation="MNDIACDQDAAQLRAEILRLSARYAELAHGPKPFDPARSSVPVN
                     GKVFGPEEMVSLVDSALDFWLTTGRFNDEFESRLAGFLGTRYLLTCNSGSSANLLAVS
                     ALTSHLHGADALQPGDEVITCATGFPTTVNPILQNNLVPVFIDAELPTYNIRADLIEA
                     AITPKTRAIVIAHTLGNPFDLETVMSLAKKHNLRVVEDCCDALGGTYKGQQLGSFGDV
                     ATLSFYPAHHITTGEGGAVFTRSSTFKRALESIRDWGRDCWCTPGQDNTCKQRFGWQL
                     GGLPHGYDHKFTYSHLGYNLKMTDMQAAVGLAQLDRLEGFIAQRKENFRALHKGFSRW
                     EDFFILPEATPGSDPSWFGFPLTVRETAPFTRDALVQHLNRARIGTRYLFGGNLLRQP
                     YMQGRNVRVVGETPNADLVMTNTFWIGVYPGIDDVRREYIL"
BASE COUNT          819 a         1758 c         1239 g          840 t
ORIGIN      
        1 cgcaaggccc tggtggacaa gctctatgcc ggcgacgagg gtgtgatcga gatcgagtga
       61 acggaggcgc catggatcgc cttgagcaga ccgaaacgcc ggagaaagac gcgccgctgc
      121 gctacgacat ccgcctgctc ggccgcatcc tgggcgacac catccgcgcc gccgaaggcc
      181 cgcagaccta cggcctcatc gaaaccctcc gccagctcgc tgtgcgcttt catcgcgacc
      241 aggaccacac cgcccaggcc gagttggaat ccatcctcgc cagcctctcg gacaatgagg
      301 tcaacctcac cacccgtgcc ttcggttatt tctccatcct cgccaacatt gccgaggacc
      361 atcaccacac gcgccgctgg cgcgcccacc agatcgccgg ctccccgccg cgcgagggca
      421 gcctcgccaa cgccatcgcc accgtccgcg cgcagagtta cgacgatgcc cggctgaagt
      481 atttctttga gaccgcttcc atcactccgg tcctcaccgc ccatcccacc gaagtgcagc
      541 gccgctccat cctcgatatt ctcgacgcca tcgccgccct cctcgtccgc cgcgaccgcc
      601 tggccgaaac caaggaggaa tatgcggaaa tcgaaaccgg cctgcgcacg ctcgtcctca
      661 ccctctggca gacccgcacc ctgcgccagg ccaagctctc ggtgctggac gaggtcgaca
      721 acgcgctcgc ctttttcgat gccaccttct tcgccgaatt gccacggctc tacgagtcgg
      781 tggaaaaatc cattggcgcc gagcgcctgc cgcctttcct cgaaatcggc agctggatcg
      841 gcggcgaccg cgacggcaat cccttcgtcg atgcgcaggt cctcaccgaa gctctggccc
      901 tgcaggccga gcgcgccttc ggcttctaca tcgccgaggc ccgccagctg cgcaaagaat
      961 tgccgctcgc tgcactcctc accaacgtca ccccggaatt acaggcactg ggccaggatt
     1021 cccccgacaa atccgagcac cgggccgacg agccctaccg tctcgccttg gccaatatcc
     1081 aggcccgcct cgccgccacg catcgcgccc tgctcggccg ccagcatatc ggcagcatct
     1141 cctcctccgt ccgcggggtc tccgcgccgc cctacgctac accagaggag tttgctgcgg
     1201 atctcgaaat catcgagcgc tcccttctag aaaacggtgc caaacttcta gcccaaggcc
     1261 gcctcggcaa gctcctgcgc gccgcccgcg tctttggctg gacgctcgca ccgctcgatc
     1321 tacgccagaa ttccgacgtg catgaacgcg tcgtcgcgga actgctggaa atcgccaacc
     1381 ctggagcaga ttatctttct ctcgacgaag ccgcccgcat cgccctgctt tccgccgaac
     1441 tcgccacctc ccgcccgctc gtctcgcgcc acatcaccta cagcgccgaa accgcgaaag
     1501 agcttgccat ctttgatgcc gcccgcgccg cccacttacg ttacggcaaa cgctgcataa
     1561 ggacggcaat catctccaaa tgcgacggtg tctcggacat gctggaactc gccgtgctgc
     1621 tgaaggaagc cggccttctt cgtcccgccg aagctgcgct tgacatcgac atcgtcccct
     1681 tgttcgagac catcggcgat ctccgcgccg cccccgccac catggaggcc atgttctcgc
     1741 tcccggtcta ccgccagctc ctggccggaa ggggcgatac gcaggaagtg atgctcggct
     1801 attccgacag caacaaggat ggcggcttcc tcacctccgg ctgggagctt taccgtgccg
     1861 aggtcgggct ggtggaggtt ttcaaccgcc atgatgtccg cattcgcctg ttccatggcc
     1921 gtggcggctc ggtcgggcgc ggcggcgggc ccagctacca ggccattctc gcccagcccc
     1981 ccggcgcggt gcaggggcaa atccgcctca ccgagcaggg cgaggtcatt gccgccaaat
     2041 atggcaatgc cgaggtcggc cgccgcaacc tggaagtgct ggtctccgcc acgctagtcg
     2101 ctacagccga gcccgcccac gccgccccgc tcgatccacg cttcacggat gccttcggca
     2161 ccctctccga ccacgccttc gccgcctacc gcaaccttgt gtacgaaacc cccggcttcg
     2221 aggattattt ctggtcctcc accgtcatca ccgaaatcgc cgccctcaat ctcggctccc
     2281 gcccggccag ccgcgccaaa gggcgttcca ttgaagattt gcgcgccatt ccctgggtct
     2341 tctcctgggc gcaatgccgc gtcatgctcc ccggctggta cggtttcggc accgctgtct
     2401 cgcaattcct cgaagaaaaa ggcccggagc gcggcctctg gctgctgcaa tccatgttcc
     2461 aggattggcc ggtcttttcc actctgctca tgaatatgga catggtgatg gccaaggccg
     2521 acatgggcat cggcgcccgc tacgccgccc tggtggaaga tgcagcactc cgcgaccgca
     2581 tttttggccg catcaaggaa gaatatgagc gcaccacggc gcatctcctc gccatcaccg
     2641 gccagcgcgc cctgctggag cgcaacccgg tcctgcgccg ctccatcgtc aaccgcttcc
     2701 cctatctcga cccgctcaac catgtgcagg tggagatgat gcgccgctac cgcgtggcgc
     2761 aggatggggc aggggacgtg tccgagcgca tccgccgcgg cgtccacatc tccatcaacg
     2821 gcatcgccgc cgccctgcgc aatagcggct gagcttcatt ttcccgcgag tcggtgtttt
     2881 tgctctggcc ccgcgccgcc gtgcgaggct aaacagggtg ctggagacac tggatgcaac
     2941 tttcgcgcgc cattaccggc ctgatgacca tgcgcctgcg ctggatggtc gcgctcggcc
     3001 tcgccctggc gctcgccgct gtgccggccg ccggcttggc catccccggc ctcatcccgt
     3061 tcactgccat cgcgttgctc ttcctcggcg gcatccaact cgccgctttt ggcatcatcg
     3121 ccgattacct cgccttcacc ctgccccagt tgcagcgcgc ccttgaacag cagcgggccg
     3181 gcgcctaaag cccttaagag actgattgaa aactcgctct ggtgagtcgc atggcggtga
     3241 tttttgagca ccggagcaga gcgtacttga agtacgcgag caccggagcg cagaaaatcg
     3301 ccatcaggcg gcctccagag tagagtttgc agcagtctct taggcttagg aggctcccat
     3361 gaacgacatc gcttgcgacc aggatgcggc ccaattgcgc gcggaaatcc tccgcctgtc
     3421 cgcccgctat gccgaactcg cccatgggcc aaaaccattc gaccccgccc gctcgtccgt
     3481 ccccgtcaac ggcaaagtgt tcggccccga ggagatggtc agcctcgtcg attccgcgct
     3541 tgatttctgg ctcaccaccg gccgcttcaa cgacgaattc gaatcccgcc tcgctggctt
     3601 cctcggcacg cgctatttgc tcacctgcaa ttccggctcc tccgccaacc tgctcgctgt
     3661 ctcggcgctc accagccacc tgcacggcgc cgacgcgctg cagcctggcg atgaagtgat
     3721 cacctgcgcc accggcttcc ccaccacggt caaccccatc ctgcagaaca acctcgtccc
     3781 cgtcttcatc gacgccgagc tgcccaccta caatatccgc gccgacctca tcgaagccgc
     3841 catcacaccg aaaacccgcg ccatcgtcat cgcccacact ttgggcaacc cgttcgacct
     3901 cgagacggtc atgtcgctcg cgaaaaaaca taatctgcgc gtggtggaag attgctgcga
     3961 tgcgttgggc ggcacctata agggccagca gctcggcagc ttcggcgacg tcgccacgct
     4021 gagtttttac cctgcccacc acatcaccac cggcgaaggc ggcgccgtct tcacgcgctc
     4081 ttccaccttc aagcgcgccc tggaatccat ccgcgactgg ggccgcgatt gctggtgcac
     4141 ccccggccag gacaatacct gcaagcaacg tttcggctgg cagctcggcg gcctgccgca
     4201 cggctacgac cataaattca cttattcaca cctcggctat aacctgaaaa tgaccgacat
     4261 gcaggccgcc gtgggcctcg cccagctcga ccgcctggaa ggtttcatcg cgcaacgcaa
     4321 agaaaacttc cgcgccctgc acaaaggttt ttcccgctgg gaagatttct tcatcctccc
     4381 cgaagccacg cccggctccg acccctcctg gttcggcttc cccctgaccg tccgcgagac
     4441 cgcccccttc acccgcgacg ccctggtcca acacctaaac cgcgcccgca tcggcacccg
     4501 ctacctcttc ggcggcaacc tcctccgcca gccctacatg cagggccgca atgtccgcgt
     4561 ggtgggcgaa acccccaacg ccgatctcgt catgaccaac acattctgga tcggcgtcta
     4621 tcccggcatc gacgatgttc ggcgggagta tattct
//
LOCUS       DASQCV010000147         3802 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2184562, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000147 DASQCV010000000
VERSION     DASQCV010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3802
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2184562"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1001
                     /locus_tag="VEQ16_02190"
     CDS             <1..1001
                     /locus_tag="VEQ16_02190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62666.1"
                     /translation="LAGGLGIVGGLMNMFGGSPANNAMNIQAPQMYQQDPSAGFAGQQ
                     SMIPGLGQYNLGGQNLGAYQSYLSSALNNPYAGGMQGAANMFGGAGMGTSLGALGNAG
                     ALGGQVPGMIGASNAVLGSAFDPQGALYGRTLGQVTDQEGAYLANAGLGTTPYGAGLM
                     GQTLGNFNIDWQNQQLGREVQGLGAYTGGIGAAGQTAAGAYGLGANAATGGAQFGGLP
                     WSTFNTIGGMPLGLLSGASQYGVGAANIPQQQIGDWQQYVSGAGGINQGATQLFGQEL
                     NQARLASQQQAMAGQQLGYGLGQLGTGLGLPQTFGGGGGGGGNYGTSGGLFSWMRQ"
     gene            complement(1155..1451)
                     /locus_tag="VEQ16_02195"
     CDS             complement(1155..1451)
                     /locus_tag="VEQ16_02195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62667.1"
                     /translation="MLLEILTTIRLPLRLLLLCRRLLLGRLLLGRLLLGGLLLRLPAA
                     RGRLLLRLLLAVAAPVFSPGGRLRLLRSRRRLRCTRRLLLLRAAAWTRPVLRRA"
     gene            1464..2048
                     /locus_tag="VEQ16_02200"
     CDS             1464..2048
                     /locus_tag="VEQ16_02200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62668.1"
                     /translation="MTLRDAITAVAQAAQRRGQPVDPGSVMRAVSKLLPSLNAEAQAE
                     YKELTLQLREQQIQNVQTRQEAEGERIQQGWARLAEQHENNIRIQLRADKRLEEYDKK
                     LAQDRQISDEKARAKAIQQHITERRNIISTAINAYGISHMVDKPFVDSLIQKYIDEYE
                     TQPPPPGSQPEGTGQPQGQIRDWDKETGTIMPLR"
     gene            2082..>3802
                     /locus_tag="VEQ16_02205"
     CDS             2082..>3802
                     /locus_tag="VEQ16_02205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62669.1"
                     /translation="MLADFKRIFAREPKPDVPKPVFEPKPQVKSEDIFGKPPEQAKPP
                     EAKPAPGPRLSQQPLPSAQKGFPSPGPSTMGSIQPMGTSDLLDAINAAIGKVQPPKGT
                     PPATFPPGATTGKTTPTWLRATQAKPAPPAGVKFPTPPGAVKAPLAALQQPRPPGVPQ
                     DWMPVQRPAGLQEKGHTPGGFWDAPDGQRWYVKTEPREELARNEKLANELYKVAGAIV
                     PDMEIEGATIRTKAMPNARTMLDAHPDDQKIAGQAIKPDWAADGWLGNWDVHEGNILI
                     DKDDPTKHMRIDPGGALDFWGMGGPKRDRGLQLTTNTKEEEEWRHIISMKNLTRAEVV
                     ASTDKLVRNVSREKVAQAVTKYGPKDPIAQRNLTNLLMRRRNNVIELAADKAYYKPPV
                     VGTKAERMRERQLAFGGKIVGTYLPSDKNLQDIKNLDAYFGGFRKPHPNIAVSFSDKE
                     AAEKIASFMGRPGDPKFVHDLVASVSDYKVVDARGQPPALQDLVNSAKKDYYPGVIVE
                     NAFVGGKTQTVLINMDGPLLRSTQAEFNLGKMHLQDLLASGTAITIGAGLGSMLVGEA
                     KAAQPES"
BASE COUNT          831 a         1139 c         1242 g          590 t
ORIGIN      
        1 cgctggcagg tggcttggga atagtcggcg gcttgatgaa catgttcggc ggcagccccg
       61 ccaacaacgc catgaacatc caagcgccgc aaatgtatca gcaggacccg tctgccggct
      121 ttgccgggca gcagtccatg atccctgggc ttgggcaata caatctcggt ggccagaacc
      181 tcggcgccta tcaaagctac ctcagctcgg cgctcaacaa tccctatgcc ggcggcatgc
      241 aaggtgcagc caacatgttc ggcggcgctg gcatgggcac cagtctgggc gcgctcggta
      301 atgccggtgc gctcggtggg caggtgccgg gcatgattgg tgcctccaat gcggtgctcg
      361 gctctgcctt cgatccgcag ggagcgcttt acggccggac cttggggcag gtcaccgacc
      421 aggagggggc ctatctggcc aatgccggcc tgggcactac gccctacggc gccgggttga
      481 tgggacagac gctcggcaac ttcaatatcg actggcagaa ccagcagctt ggccgcgagg
      541 tgcagggctt gggggcctat accggcggca tcggggcggc cgggcagacg gcggccggcg
      601 cttatggctt gggggccaat gcggctaccg gcggtgccca gttcggcggc ttgccgtgga
      661 gcaccttcaa caccatcggc ggcatgccgt tgggcttgct gtccggtgca tcgcagtacg
      721 gtgtcggtgc tgccaacatc ccgcagcagc agatcggtga ctggcagcaa tacgtgtcag
      781 gggccggcgg gatcaaccag ggtgcaacgc agttgttcgg tcaggagctt aatcaggcac
      841 ggctggccag ccagcagcag gccatggcgg ggcagcagct tggctatggg ctgggtcagc
      901 tcggcacggg gctcggtctg ccgcagacct ttggcggtgg tggcggtggc ggcggcaatt
      961 acggtaccag cggcggacta ttcagttgga tgcggcagta agaggcggtc atggcgggtc
     1021 tcggtggact aggagcattg ggcgccgtcc ctggcggcta catggagggt gccaacgcgg
     1081 ctttcgactt caataaaaag ctgcaggaca agcaggacga gggcttggcc ggtgaggcgc
     1141 tgatgagctt gcagtcaagc tcggcgcagt acgggccggg tccaggcggc ggcccgcagc
     1201 aacagcagcc tccgggtgca gcgcagccgc cgccggcttc gcagcagcct cagccgcccg
     1261 ccggggctaa agactggcgc agctacggcc agcagcagcc gcaacagcag cctgccacgg
     1321 gcggcgggca accgcaacag cagcccgcca agcagcagcc ggccaagcag cagccggccc
     1381 agcagcaacc gccggcacag caacagcagc cgcaagggca gccttatggt ggtcagtatt
     1441 tccagcagca atcacaagga cgcttgaccc tgcgcgatgc cattaccgcg gtggcgcagg
     1501 cggcacagcg gcgcgggcag ccggtcgacc ccggttcggt gatgcgcgcg gtgagcaagc
     1561 tgctaccgtc gctcaatgcg gaggcgcagg cggagtacaa ggagctgacg ttgcagctac
     1621 gcgagcagca gatccagaat gtgcagacac gccaagaggc ggagggggag cggatacagc
     1681 aggggtgggc gcggttggca gagcagcatg aaaacaacat acgcatacag ctcagggctg
     1741 ataaacgctt ggaagaatat gataagaaac tggcgcaaga tagacagatt tctgatgaga
     1801 aggcacgggc aaaagccatt caacagcaca tcacggagcg ccggaacatc atttcgaccg
     1861 ccatcaatgc ttacggtata agccacatgg tggacaagcc attcgttgat agcctgatcc
     1921 agaaatacat cgatgagtat gaaacacagc cgcctcctcc aggctcgcaa ccggagggga
     1981 cagggcagcc gcaaggacag atacgcgact gggacaaaga gactggcacc atcatgccgc
     2041 tcaggtagga catgcctatt ggccccgcag agctggagaa gatgctagcg gacttcaagc
     2101 gcatcttcgc gcgcgagccc aagcctgatg tccccaagcc ggtgttcgag cccaagccac
     2161 aggtaaaatc ggaagacatc ttcggtaagc cgccggagca ggccaagccg ccggaggcca
     2221 agcccgctcc tgggccacga ttaagccagc agccattacc ttcagcgcag aaagggttcc
     2281 cctcccctgg accatccacc atgggctcca ttcagccgat gggtaccagc gatctgctgg
     2341 atgccataaa cgcagcgatc ggcaaggttc aaccacccaa ggggacacca cctgcaactt
     2401 tccctccagg tgcgaccacc ggcaaaacta cacctacatg gcttagggct acgcaagcca
     2461 agccagcgcc cccggctggg gtgaaattcc ctacccctcc aggggccgtt aaagccccgc
     2521 tggctgcgtt gcagcagccc cgcccccctg gggtgccgca ggactggatg ccggtccagc
     2581 ggccggcagg gctgcaggag aaggggcata cccctggcgg cttctgggac gcccctgacg
     2641 gccagcgctg gtatgtgaag acggaaccca gagaggagct ggcccgcaat gagaagctcg
     2701 ccaatgagct ttacaaggtc gccggggcca tcgtgccgga catggagatc gaaggtgcta
     2761 ccatacgcac caaggccatg cccaatgcca ggacgatgtt ggatgcacat cctgatgatc
     2821 agaagatcgc cgggcaagcc atcaagccgg attgggcggc ggacggctgg ctggggaatt
     2881 gggacgtgca cgagggcaac atcttgatcg acaaggatga ccccaccaag cacatgcgca
     2941 tcgatcccgg cggcgcgctc gacttctggg gcatgggtgg ccctaagcgc gatcgcggct
     3001 tgcagctcac cacgaatacg aaggaggaag aagagtggcg gcatatcatc tccatgaaga
     3061 acctgacccg tgcggaggtg gtggcgagta ccgataagct ggtcagaaat gtttcacgtg
     3121 aaaaggtggc ccaagcggta acgaagtatg gacccaaaga cccgatcgcc cagcgcaatc
     3181 ttaccaacct gctgatgcgg cgacgcaaca acgtgatcga gctggctgcg gacaaagcct
     3241 actacaagcc gccggtggtg ggcaccaagg ccgagcgcat gcgcgagcgg cagcttgcct
     3301 tcggcggcaa gatcgtcggc acctacctgc ccagcgacaa gaacctgcag gacatcaaga
     3361 acttggatgc ctattttggc gggtttagga agccgcaccc taatatcgcc gtgtcattca
     3421 gtgacaagga agcagcggaa aaaattgcca gtttcatggg gaggccggga gatccgaagt
     3481 ttgtccacga cctcgttgcc agcgtcagtg actacaaggt ggtggacgct cgtggtcagc
     3541 cgcctgccct tcaggatctg gtcaattcag ccaagaaaga ttattacccc ggtgtgatcg
     3601 tcgaaaatgc tttcgtcggc ggcaagacgc aaaccgtcct catcaacatg gacggccccc
     3661 tgctccgctc cacgcaggcg gaattcaatc tcggcaagat gcacctgcaa gacttgctgg
     3721 ccagcggcac cgccataaca atcggcgctg gcctgggcag catgctggtg ggcgaggcga
     3781 aggcggcgca gccggagagc aa
//
LOCUS       DASQCV010000148         4896 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1687283, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000148 DASQCV010000000
VERSION     DASQCV010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4896
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1687283"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            79..1689
                     /gene="ctaD"
                     /locus_tag="VEQ16_02210"
     CDS             79..1689
                     /gene="ctaD"
                     /locus_tag="VEQ16_02210"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019462842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit I"
                     /protein_id="HYP62670.1"
                     /translation="MSTTTHDHDHGHAHGAHGEHRQSFVSRWLMSTNHKDIGTLYITM
                     AFIGACVGGTLSMIMRQQLMYPHNTLITNGNEWNAIITAHGLLMIFWFVMPALIGGLG
                     NWFVPIMIGAPDMAFPRLNNMSFWFLACGFVFVMLGLFLGSGTGAGWTLYPPLDNAQY
                     SPGMATDFSLFSLHLAGISSLLGAINFIATILNMRAPGMGMHKMPLFCWAILVTAFLL
                     VLAIPVLAGAVTMLIMDRNFGTSFFEPSGGGDPVLFQHLFWFFGHPEVYIMILPAFGI
                     ISHVVSTFSKKPVFGYLGMAYAMVIIGFVGFVVWAHHMFVSAISTDSKIYFQVATLVI
                     AVPTGIKVFSWIATMWGGSIEFKTPMLWAMGFIFLFVVGGATGVVLANAALDQILHND
                     YFLIAHFHYVLSMGAAFGIFAGIYYWIGKMTGHQYPEFWGKVHFWTFFIGVNLTFFPQ
                     HFLGLAGMPRRYPDYADAFAGWNYVSSIGSMISGASTLVFFYVLYRVFTGKDQLADNY
                     WGEGATTLEWAIPSPAPQHTFLDVPVIR"
     gene            1714..2631
                     /gene="cyoE"
                     /locus_tag="VEQ16_02215"
     CDS             1714..2631
                     /gene="cyoE"
                     /locus_tag="VEQ16_02215"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HYP62671.1"
                     /translation="MNASTASFTPPLGAEPKDWIALLKPRVCSLVVFTGAIGLVIAPG
                     HINPFLALVAICCIALGAGAAGAINMWYDADIDALMRRTAKRPLPAGRIEPGGVLGLG
                     LVLSVFSVLLLAMATNLVAAGALAFSIFYYAVIYTMWLKRRTPQNIVIGGGAGAFPPI
                     IGWASVTGHIGLLPVLLFAIVFFWTPPHFWSLSLYAATDYEKAGVPMLPVVKGAKHTR
                     LNVLAYSLLLLPLSISPWLLGLTGRIYGLTALVVSAVFAVLCFGVFADRQDEAGVSLT
                     GDKPARRAFKFSLLYLVLLFTAVAVDRLV"
     gene            2633..2854
                     /locus_tag="VEQ16_02220"
     CDS             2633..2854
                     /locus_tag="VEQ16_02220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62672.1"
                     /translation="MTRDHLERAPSRDDPDRMPRTELGKAQWTDEQRIEFLRRRKARN
                     WLLFAALAVFCVMIYGIAIIKLHEYGQMW"
     gene            2889..3740
                     /locus_tag="VEQ16_02225"
     CDS             2889..3740
                     /locus_tag="VEQ16_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HYP62673.1"
                     /translation="MSGTVHTATDQIEGTVPHPYHLVDPSLWPLCGAVAAMITFTGII
                     LAAHLHIFSVLILGLVLDGSIMYVWWRDVVRESSTPGLHKIVTQVGLRYGMALFISSE
                     VMFFVSFFWNYFNYFFYPEKMGTAFAPVWPPQGVTTIDPFAIPLFNTMVLLLSGTTVT
                     WAHHCLLEGDKKNLVRGLGITIILGLMFLCGQAWEYTHSPFPFYHGGIFASSFFIATG
                     FHGVHVIIGTIFLIVCFFRARRGHFTPERHFGFEAAAWYWHFVDVVWLFLFVCIYYLG
                     RSAITAG"
     gene            3780..4484
                     /locus_tag="VEQ16_02230"
     CDS             3780..4484
                     /locus_tag="VEQ16_02230"
                     /inference="COORDINATES: protein motif:HMM:NF014193.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SURF1 family protein"
                     /protein_id="HYP62674.1"
                     /translation="MTAAPRPWRRLIAPGIAAFIVFWVLIAMGVWQLQRLKWKEGIIA
                     SIREAQVAAPVPLPDNPSPFQKVIATGTWVPGKAALYGDEVHDTPNGPVPGAELIMPL
                     RLENGAVVLVDLGWVPETAPAPLAGLPGHAVGYVHAPLHADWTSGADDPAKGLYYTLD
                     PAKIGTGMGLTNVAPYSLIALGPIPPPGSQKPQPQQDLPTPPNNHYEYALTWFGFAGV
                     LVFQFIFFARKRLLEP"
     gene            4481..>4896
                     /locus_tag="VEQ16_02235"
     CDS             4481..>4896
                     /locus_tag="VEQ16_02235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase M32"
                     /protein_id="HYP62675.1"
                     /translation="MTQLVNDYVALEQKFARIACLNEAASMLSWDAAAMMPDGGAEAR
                     AEQLATLAGLAHEFLSAPEIAENLAAARPETDWQEANVALMREAHIRATALPRDLVEA
                     SVRAGRACESLWRQARQEGNFAAVQAALTEVVNLTR"
BASE COUNT          774 a         1510 c         1505 g         1107 t
ORIGIN      
        1 accgtgccgg cgttgccctt ctcgtcgccg atgccccgca accaacttgc cgacgccacg
       61 cgctgaggat tttgctcaat gtccacgaca actcatgacc atgatcacgg ccacgcccat
      121 ggcgcacatg gcgagcatag gcagagcttc gtcagccgct ggctgatgag caccaaccac
      181 aaggatatcg gcacgctcta tatcaccatg gcgttcatcg gcgcctgcgt gggcggcacg
      241 ctgtccatga tcatgcgcca gcagctgatg tatccgcata ataccctcat caccaacggc
      301 aatgagtgga atgccatcat caccgcgcat gggctgctga tgatcttctg gttcgtgatg
      361 cccgcgttga ttggcggcct tggcaactgg ttcgtgccca tcatgatcgg cgcgccggac
      421 atggccttcc cgcgcctgaa caatatgagc ttctggttcc tcgcctgcgg cttcgtgttc
      481 gtgatgctgg ggctgttcct gggctccggc acgggggcgg gctggacgct ctatccgcct
      541 ttggacaacg cgcaatactc gcccggcatg gcgacggatt tctcgctttt ctcgctccat
      601 cttgccggta tttcctcgct gctcggtgcc atcaacttca tcgccaccat cctcaacatg
      661 cgcgcacccg gcatgggcat gcacaagatg ccgcttttct gctgggccat ccttgtcacc
      721 gccttcttgc tggtgctggc catccccgtg ctggccggtg ccgtgacgat gctgatcatg
      781 gaccgcaatt tcggcacctc cttcttcgag ccttcgggcg gcggcgatcc ggtgctgttc
      841 cagcatctct tctggttctt cggccatccg gaagtgtaca tcatgattct gccggccttc
      901 ggcatcatca gccacgtggt ctccaccttc tccaagaagc cggtgtttgg ttatctcggc
      961 atggcctatg ctatggtgat catcggcttc gtcggcttcg tggtgtgggc gcaccatatg
     1021 ttcgtctccg ccatcagcac agattcgaag atatattttc aggtggcgac cctcgtcatc
     1081 gctgtaccga cgggcatcaa ggtgttctcc tggatcgcca ccatgtgggg cggctccatc
     1141 gagttcaaga cgccgatgct ctgggccatg ggcttcatct tcctgttcgt ggtgggcggc
     1201 gccaccggcg tggtgctggc caatgccgcg ctggaccaga tcctgcataa tgactacttc
     1261 ctcatcgcgc atttccatta tgtgctgagc atgggcgccg ctttcggcat ctttgccggg
     1321 atttactact ggatcggcaa gatgaccggg catcaatatc cggaattctg gggcaaggtg
     1381 catttctgga ccttcttcat cggggtcaat ctcaccttct tcccgcagca tttcctgggc
     1441 ctggccggca tgccgcgccg ctatccggat tatgctgatg cgttcgccgg ctggaactat
     1501 gtgtcctcca tcggctcgat gatttcgggc gcgtccacgc tggtgttttt ctacgtgctg
     1561 taccgtgtgt ttaccggcaa ggatcagctc gccgacaatt actggggcga aggcgccacg
     1621 acgctggaat gggccatccc gtcgcccgcc ccgcagcata ctttcctcga tgtgcctgtg
     1681 atccgctaag tccgctaagg atgatccgct gagatgaatg cctcgaccgc cagcttcaca
     1741 ccgcctttgg gcgccgaacc caaggattgg attgcgctgc tcaagccgcg cgtgtgctcg
     1801 ctggtggtat tcaccggggc catcggcctt gtcatcgcgc cgggtcatat caacccgttc
     1861 ctcgctttgg ttgccatttg ctgcatcgcc ttgggggcgg gcgcggccgg ggcaattaac
     1921 atgtggtacg acgccgatat cgacgcgcta atgcgccgca ccgccaagcg gcctctgccg
     1981 gcggggcgca tcgagccggg cggggtgctg ggccttggtc tcgtgctgtc cgtgttttca
     2041 gtgctgctgc tggccatggc gacgaatctg gtcgcggccg gggcgctggc tttctctatt
     2101 ttctattatg ccgtcatcta caccatgtgg ctgaagcgcc ggacgccgca gaatatcgtc
     2161 attggtggcg gggcaggggc gtttccgccg atcatcggct gggcgtcggt cactggccat
     2221 atagggctgc tgccggtgct gctctttgcc atcgtgttct tctggacgcc gccgcatttc
     2281 tggtcgctct cgctctatgc cgccacggat tatgagaaag ccggcgtgcc gatgctgccg
     2341 gtggtgaaag gcgcgaaaca cacgcgcctc aacgtgctgg cctattcgct gctgcttctg
     2401 ccgctctcca tctcaccctg gctgctgggg ctgaccgggc ggatttacgg gctaaccgcg
     2461 ctggtggtga gtgcggtatt cgccgtgctg tgcttcggcg tgtttgccga ccgccaggat
     2521 gaggcgggag tgagcctgac cggcgacaag ccggcacgcc gcgccttcaa attctcgctc
     2581 ctttatctgg tactgctctt caccgccgtg gcggtggacc ggctggtgtg acatgacgcg
     2641 cgaccatctt gagcgcgcgc cgtcgcgcga cgaccccgac cgcatgccgc gtacggaatt
     2701 gggcaaggcg caatggacgg acgagcagcg catcgaattc ctgcgccggc gcaaagcgcg
     2761 caactggctg ctattcgcgg ccttggcggt gttttgcgtg atgatctacg gcatcgccat
     2821 tataaaactg catgaatacg gccagatgtg gtaaggccgg aatgaaaaat cggatggggg
     2881 aataaagaat gagcggcacg gttcataccg cgacggacca gatagagggc acagtcccgc
     2941 atccatatca tctcgtcgat cccagcctct ggccgctttg cggggccgtg gcggcgatga
     3001 tcaccttcac cggcatcatt cttgccgcgc atctgcatat tttctctgtg ctgatcctcg
     3061 gcctcgtcct cgatggcagc atcatgtatg tgtggtggcg cgacgtagtg cgcgaatcga
     3121 gcacgccggg gctgcacaag atcgtaacgc aggtgggctt acgctacggg atggcgttgt
     3181 tcatctcgtc cgaggtgatg ttcttcgtct ccttcttctg gaattacttc aattatttct
     3241 tctacccaga gaagatgggc acggccttcg ccccggtctg gccgccgcag ggcgtcacga
     3301 ccatcgaccc cttcgccatt ccgcttttca acaccatggt gctgctgttg tccggcacca
     3361 ccgtcacctg ggcgcatcat tgcctgctgg agggggataa gaagaacctc gtgcggggtt
     3421 taggcatcac catcattctt ggtctgatgt tcctgtgcgg gcaggcgtgg gaatatacgc
     3481 attcgccctt tcccttctat catggcggca ttttcgcctc gtccttcttc atcgccacgg
     3541 gcttccatgg cgtgcatgtg atcatcggca ccatcttcct catcgtgtgc ttcttccgcg
     3601 cccgccgcgg ccatttcacg ccggagcgtc atttcggctt cgaggcggcg gcctggtact
     3661 ggcacttcgt ggacgtggtg tggctgttcc tgtttgtatg catctattat ctcggccgta
     3721 gtgcgattac tgccggctga aggtaaggcc gggggcgggg cccctggcct tatctgccga
     3781 tgaccgcagc acctcgcccc tggcggaggc ttatagcccc gggcatcgcc gcgttcatcg
     3841 tcttctgggt gctcatcgcc atgggcgtct ggcagctgca gcggctgaaa tggaaagaag
     3901 gcatcatcgc ctccatccgt gaggcgcagg tggcggcgcc cgtgcctttg ccggacaatc
     3961 cttcgccgtt ccagaaagtg atcgccaccg gcacatgggt gccgggcaag gcggcgcttt
     4021 atggcgatga ggtgcacgac acgccaaatg gcccggtgcc gggggcggag ctgatcatgc
     4081 cgttgcgcct ggagaatggc gctgtggtgc tggtggatct gggctgggtg ccggaaacgg
     4141 cacccgcgcc gttggcgggg ctgcccggcc atgccgttgg ctatgtgcat gcgccgctcc
     4201 atgccgattg gacctccggc gcggatgatc cggcgaaggg gctctattac acgctcgacc
     4261 ccgcgaaaat cggcaccggc atggggctga ccaatgtggc gccctactca ctcatcgcac
     4321 tggggccgat accgccgccg gggagccaaa aaccacagcc gcagcaggac ctgcccacac
     4381 cgcccaacaa tcattatgaa tatgcgctca cctggttcgg ctttgccggg gtattggtgt
     4441 tccagttcat ctttttcgcc cgcaagaggt tgcttgagcc atgactcagc ttgtgaatga
     4501 ctatgtcgcg ttggagcaga aatttgcccg cattgcctgc ctgaatgagg cggcttcgat
     4561 gctgagctgg gacgccgcgg cgatgatgcc cgatggcggc gcggaggcca gggccgagca
     4621 gctcgccacc ctggccgggc tggcgcatga atttttgtcc gccccggaga ttgccgagaa
     4681 tctagcggcg gcgcggccgg agacggattg gcaggaggcc aatgtcgcgc tgatgcgcga
     4741 ggcgcatatc cgcgccacgg cgctgccgcg cgatctggtg gaagccagcg tgcgggccgg
     4801 gcgggcctgc gaaagcctgt ggcgccaggc gcggcaggag ggaaatttcg ccgccgtgca
     4861 agcggcgctg actgaggtgg tgaatctcac gcgcga
//
LOCUS       DASQCV010000149         1585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_361124, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000149 DASQCV010000000
VERSION     DASQCV010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_361124"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1508
                     /locus_tag="VEQ16_02240"
     CDS             <1..1508
                     /locus_tag="VEQ16_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase"
                     /protein_id="HYP62676.1"
                     /translation="LSYTPYRNGQGPLSKGYPAPAQIASDLALIATQANGIRTYTALE
                     GSPKETARRLANGTSIAALAQKAGLKLWLGIWLGADPASNQEQMAAAIAVANAYPDTV
                     TRIVVGNEVLLRRDLSVEDLIADIDYVRGRVKQPVAYADVTDFWKKYPQVAPHVDVVM
                     IHILPYWENKPLSLDDALAGIQSTITQFKTLFPGKQISIGETGWPSRGRWRGAAAPSR
                     VNEAVYLRRFAALAAQNGVDYNVIEAFDQGWKYKQEGVAGANWGIWNAHRVLKFPLNG
                     AVTERPSWPWYALLGALLGCALFASVGFRNLRLAVPAFALGNGFAIACIGTLPLLYDK
                     WQWLGALVNLPLQLIFAFRIIGRTDDVLAKRPLPPVMNGAAVLASLRRFRVPFTYDGL
                     WFIFLASAPIFQAILVLNGRYFDAPTPVFIIPIIAAVLRFWSKDKPSQMGWEELLASF
                     ALAVLALADLLMEGQQNLDFVVWNVGALVLAAPCIMAAEGKKGRRKVKKAG"
BASE COUNT          262 a          503 c          514 g          306 t
ORIGIN      
        1 ccttgtccta cacgccttac cgtaacgggc agggaccgct gagcaagggc tatcccgcac
       61 cggcgcagat cgcgtctgac ctcgccctca tcgccaccca ggctaacggc atccgcacct
      121 ataccgcgct tgaaggctcg ccgaaggaaa cggcgcggcg cctcgccaac ggcaccagca
      181 tcgccgctct ggcgcagaag gccggactga aactctggct cggcatctgg ctgggcgccg
      241 acccggcgag caaccaggag cagatggcgg ccgccatcgc cgtggccaat gcctacccgg
      301 ataccgtcac ccgaatcgtc gtcggcaacg aagttctgct gcgccgcgac ctttcagtgg
      361 aggatttgat tgccgacatc gattatgtgc ggggccgggt gaagcagccc gtcgcctatg
      421 cggatgtgac ggatttctgg aagaaatacc cgcaagtggc gccgcatgtg gatgtggtga
      481 tgatccatat cctgccttat tgggagaata agccgctgag cctggacgac gcgctggcgg
      541 gcatccagtc caccatcacc caattcaaaa ccctcttccc cggcaagcag atttccatcg
      601 gcgagacggg ctggcccagc cgcgggcgct ggcgcggggc ggccgcccct tcgcgcgtga
      661 atgaggcggt gtatctgcgc cgcttcgccg ccctcgcggc ccagaacggg gtcgattaca
      721 acgtcatcga agccttcgac cagggctgga aatacaagca ggagggcgtg gccggggcca
      781 attggggcat ctggaatgcg catcgcgtgc tgaaattccc gctcaatggc gcggtgacgg
      841 agcggccgag ctggccctgg tacgcgctgc tgggcgcgct gctgggctgc gccttgttcg
      901 cctccgtcgg cttccgcaat ctgcgcctcg ccgtgccggc cttcgctctg ggcaacggct
      961 tcgccattgc ctgcatcggc acgctgcctt tgctctatga caaatggcag tggcttggcg
     1021 cgctggtgaa tctgccgttg cagctcattt tcgcgttccg catcataggc cggaccgatg
     1081 atgtactggc caagcggcct ctgccgccgg tgatgaatgg cgctgccgtg ctggccagcc
     1141 tgcggcgttt ccgcgtgccc ttcacctatg acgggctatg gttcatcttc ctcgcctcgg
     1201 cccctatttt ccaggcgatc ctggtgctga atggccgcta tttcgatgcg cccacgccgg
     1261 tcttcatcat ccccatcatc gccgcggtgc tgcgcttctg gagcaaggac aagcccagcc
     1321 agatgggctg ggaggagctg ctggcgagtt ttgccctggc cgtgctggcc ctggcggatt
     1381 tgctgatgga ggggcagcag aatcttgatt ttgtggtctg gaatgtgggc gcgctggtgc
     1441 tggccgcgcc ctgcatcatg gcggccgagg gcaagaaggg gcgtcgcaaa gttaaaaagg
     1501 cggggtagga gcgttcacct cgacgctgat ccagcctgcc attgtgggaa tcaggtcggg
     1561 gcgaaggaac aggttctcgc cagcc
//
LOCUS       DASQCV010000150         2029 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1853473, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000150 DASQCV010000000
VERSION     DASQCV010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1853473"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..797)
                     /locus_tag="VEQ16_02245"
     CDS             complement(<1..797)
                     /locus_tag="VEQ16_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP62677.1"
                     /translation="MNTLFNNEAAGAAPAADPVMDVTQANFMAEVVDASAKFPVLVDF
                     WATWCGPCKTLTPTLEKVVRAQGGRVRLAKIDVDKNRELVAQLSRMGLPMQSVPTVVA
                     FWQGQIADTFSGALPESEVKRFVEALLKLAGSAPPAADYIAQGKELLEAGEAESAAQY
                     FAAAVQEDQDKPEAWGGFIRAVLAMGDEDQATQLLAQVPPKLAEHPEVAGARSALALA
                     EEGRKAQGALAGLEARLAANPDDFEARYELATALNASGARAEAAAALL"
     gene            931..1005
                     /locus_tag="VEQ16_02250"
     tRNA            931..1005
                     /locus_tag="VEQ16_02250"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:963..965,aa:Gly,seq:gcc)
     gene            complement(1062..>2029)
                     /locus_tag="VEQ16_02255"
     CDS             complement(1062..>2029)
                     /locus_tag="VEQ16_02255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62678.1"
                     /translation="RFAAISRQSNFPITVPACLFGDYHAESQTGLLITETIEFGENGI
                     EPHHDKCLDYELPDALGHYRAVITANARLAGEHRAGHLGTNLDKFFPFDAAAAAASDP
                     IRYDARQLRNRAARIGTFAAEFPKLLPANITSPAFIAQLSGEMPLVLEHERRIKHFLT
                     SDPDLIALCHWNANIDNAWFWRDATGTLQCGLMDWGRVGQMNIALALWGTLSAAEPDM
                     LDEELDNLLTLFLREYKTHGGPAIELSRLQAHMFLYIATMGMAWLLDAPPIIRAQLPD
                     LSPEHDRFHTGFKTSEAARTQLHMLTNVLNLWQRRNFGRFLAQLG"
BASE COUNT          355 a          578 c          714 g          382 t
ORIGIN      
        1 agcagtgcag cggcagcctc ggcgcgggcg ccggaggcgt taagcgctgt ggcaagctcg
       61 taacgggcct cgaaatcatc cggattcgcg gcgagtcggg cttccagccc ggccagcgcg
      121 ccttgcgcct tgcggccttc ctcggcgagc gccagggcag agcgggcgcc ggcgacttca
      181 ggatgttcgg ccagcttggg cggcacctgg gcgagcaact gggtagcctg atcctcatcg
      241 cccatggcca gcacggcgcg gatgaaaccg ccccaggcct cgggcttgtc ctggtcttcc
      301 tgcacggcgg cggcgaaata ctgggcggcg gattcggcct cgccggcctc cagcagctcc
      361 ttgccctggg cgatgtaatc ggcggccggc ggggcggagc cggccagttt cagcagggcc
      421 tcgacgaagc gcttcacctc gctctccggc agggcgccgg agaaagtgtc ggcaatctgc
      481 ccctgccaga aggcgaccac tgtggggacg gactgcatgg gcaggcccat gcggctgagt
      541 tgggcgacga gctcgcgatt cttgtccacg tcgatcttgg ccagacgcac ccgcccgccc
      601 tgggcccgca ccaccttctc aagagtcggg gtgagggttt tgcaggggcc gcaccaagtg
      661 gcccaaaaat cgaccagaac cgggaatttg gcggaggcat ccaccacttc ggccatgaaa
      721 ttggcctggg tgacgtccat cacggggtcg gcggccggtg cggcgcctgc ggcttcgttg
      781 ttgaaaagcg tgttcatgcc tgacatccgt atgtgtttcc ctgccctata tagtatggcg
      841 cggcgccatc ccagccccgc gcatttttgt ttaacgtgcc cgcttgcaat ccggagcggc
      901 gctgtataaa gagcctccac cgcgccgtga gcgggcgtag ctcaggggta gagcacaacc
      961 ttgccaaggt tggggtcgag ggttcgaatc ccttcgcccg ctccaaattt ccttctaaat
     1021 gatgagatgg cagccctgcg gggagaccat gcctgtgcgg gtcagccgag ctgagcgaga
     1081 aacctgccga aattccggcg ctgccagaga ttcagcacat tggtgagcat gtgcaattgc
     1141 gtgcgcgcgg cctcgctggt tttgaagccg gtgtggaaac ggtcatgctc cggcgatagg
     1201 tcaggtagtt gcgcgcggat gatgggtggg gcgtcgagca gccaggccat gcccatggtg
     1261 gcgatataga gaaacatatg cgcctgcagg cgtgaaagct cgatggcggg gccgccatgg
     1321 gttttgtatt cgcgcaggaa gagggtgagc agattgtcga gttcctcgtc cagcatgtcc
     1381 ggctcggcgg cgctgagcgt gccccagagg gcgagggcga tgttcatctg gccgacgcgg
     1441 ccccaatcca tgaggccgca ttgcagcgtg ccggttgcat cgcgccagaa ccaggcattg
     1501 tcgatattcg cgttccaatg gcatagcgcg atgaggtcgg gatcgctggt gagaaaatgc
     1561 tttatccgcc gctcatgttc gaggacgagg ggcatttctc ccgagagttg tgcgatgaag
     1621 gctgggcttg tgatatttgc cggcagaagc ttgggaaatt ccgcggcaaa agtgccgatg
     1681 cgggcggcgc ggttgcgcaa ctggcgggcg tcgtagcgga tgggatcgga cgcggcggcg
     1741 gcagcagcgt cgaaggggaa gaacttgtcg agatttgtgc cgagatggcc ggcacggtgt
     1801 tcgccggcga gcctggcatt ggcggtgatg acggcgcggt aatggccgag cgcgtcaggc
     1861 agctcgtaat cgaggcattt atcgtgatgc ggctcgatgc cgttttcgcc aaattcgatt
     1921 gtttccgtga tgagcaaacc agtttgcgat tcggcgtggt agtcgccgaa caggcaggcc
     1981 ggcaccgtga tcgggaaatt cgactggcgg gaaatggcgg cgaaacgga
//
LOCUS       DASQCV010000151         1810 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_194887, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000151 DASQCV010000000
VERSION     DASQCV010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_194887"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            43..465
                     /gene="greA"
                     /locus_tag="VEQ16_02260"
     CDS             43..465
                     /gene="greA"
                     /locus_tag="VEQ16_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010506623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HYP62679.1"
                     /translation="MRNLKANERPAIIRAIAEARAHGDLSENAEYHAARERQSFIEGR
                     IAELEEITSAAEVIDPSMLSGDTVKFGATIHLVDEDTEIEVCYQIVGMHEADIKRSRL
                     SITSPLAKALISKRVGDTVAVPAPGGDKSYEILKITYG"
     gene            470..1666
                     /locus_tag="VEQ16_02265"
     CDS             470..1666
                     /locus_tag="VEQ16_02265"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HYP62680.1"
                     /translation="MISFEDVQAAAARIKGAVLRSPFLRADGISRLTGAEVYIKYEHL
                     QATGAFKERGAANRIALLTPEEKARGVVAMSAGNHAQAVARHAALAGIKATIVMPKHT
                     PATKVTRTASWGAHVVLHGEMLAEAAAEARRFEQEEGMFFIHPYDDPAVMAGQGTMAL
                     EMFEDVPDLDALIVATGGGGLISGCAVVARHMRPECKVYGAEVEHYSAFAQALAGDPI
                     NVGGPTIAEGIAVRDIGQRPLEVLKTLNVPVLVVSEHAVESAIATLVESAKQVAEGAG
                     AASLAALLSFPEHFRGKKVGISISGANIDPRILANTLMRNLLRDGRLLRLVLEMPDRP
                     GMLAEIASRIGRLGGNILEVAHHRLFSSPSVQDAQLEIMIEARDATHGEAIETSLAEA
                     FVLRRV"
BASE COUNT          335 a          648 c          535 g          292 t
ORIGIN      
        1 ttccccatga ccgcctctgg tctcgtggca ctctaagatg aattgcggaa tttgaaggca
       61 aatgaacgcc cggccatcat ccgggctatc gccgaagccc gcgcccatgg cgacctctcg
      121 gaaaatgccg agtaccatgc cgcgcgcgag cgccagtcct tcatcgaagg ccgcatcgcc
      181 gagctggagg aaatcacctc tgccgcggaa gtgattgatc cgtctatgct ttccggcgac
      241 acggtgaaat tcggcgcgac cattcatctc gtcgacgagg atacggaaat cgaggtctgc
      301 taccagatcg tcggcatgca tgaggctgac atcaagcgct cgcgtctctc cattacctct
      361 cctctcgcca aggcgctcat ttccaagcgc gtcggcgaca cggtggcggt acccgccccc
      421 ggcggcgaca aatcctacga aatcctcaaa atcacctacg gctgagcata tgatcagctt
      481 cgaggatgtg caggccgcgg cggcgcgcat aaagggcgcg gtgctgcgct cgcctttttt
      541 gcgcgcggac ggcatctccc gcctcacggg cgcggaggtg tacataaaat atgagcatct
      601 ccaggccacc ggcgccttca aggagcgcgg ggcggccaac cgcatcgccc tgctcacgcc
      661 tgaggaaaag gcgcgcggcg tggtagcgat gtcggcgggc aaccatgccc aggccgtcgc
      721 ccggcatgcg gcgctggctg gcatcaaagc caccatcgtc atgccgaagc acaccccggc
      781 cacgaaagtg acccgcaccg cctcctgggg cgcgcatgta gtgctgcatg gcgaaatgct
      841 ggccgaagcc gccgccgagg cgcgacgctt cgagcaggaa gaggggatgt tcttcatcca
      901 cccctatgac gaccccgccg tgatggccgg ccagggcacc atggcgctgg aaatgttcga
      961 ggatgtgccg gacctcgacg ccctcattgt cgccacgggc ggcggcgggc tcatctccgg
     1021 ctgcgccgtg gtcgcccggc atatgcgtcc ggaatgcaag gtatacggcg ccgaggtgga
     1081 gcattactcc gccttcgccc aagccctggc gggtgatccc atcaatgtcg gcggccccac
     1141 aatcgccgaa ggcatcgccg tgcgcgatat cggccagcgc ccgctcgaag tgctgaaaac
     1201 cctcaacgtg cccgtgctcg tcgtctccga gcacgccgtg gaaagcgcca tcgccacgct
     1261 cgtggaaagc gccaagcagg tcgccgaagg cgccggcgcc gccagcctcg ccgccctgct
     1321 ctccttcccc gaacatttcc gcggcaaaaa agtcggcatc tccatctccg gcgccaatat
     1381 cgacccgcgc atcctcgcca ataccctcat gcgcaacctg ctgcgcgacg gccgcctgct
     1441 ccgcctggtg ctggaaatgc cggaccgccc cggtatgctc gccgaaatcg ccagccgcat
     1501 cggacgcctc ggcggaaata tcctcgaagt cgcccaccac cgcctcttct ccagcccctc
     1561 cgtccaggac gcccagctgg aaatcatgat cgaagcccgc gacgccaccc acggcgaagc
     1621 catcgaaacc agcctcgccg aagccttcgt cctccggcgc gtatagtgcc gccagggggc
     1681 tttgccccct ggacccccag cagggctccg ccctgcaccc gccggggcct gaggccccga
     1741 acccccatta gctttttggc ggaatgatga gagagggggc taacgcgcgc cccggatcga
     1801 cggctttgca
//
LOCUS       DASQCV010000152         4465 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2682376, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000152 DASQCV010000000
VERSION     DASQCV010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4465
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2682376"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(14..892)
                     /locus_tag="VEQ16_02270"
     CDS             complement(14..892)
                     /locus_tag="VEQ16_02270"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP62681.1"
                     /translation="MSPLKALSSVSWRRGWVAVMSLLSLPTVWFVGLYLAAIGATFIT
                     SFWTVDDMSGALIPGFSLVNFQSLLADPTYAHIAARTIFIAAAVTITDVIMAWPVAYA
                     MIRLAGPRLRAGMMAAVMIPLWSSYLARVYAWRLILSHDGVLNWALSAIGLPGMHIGY
                     SNWAMWIVFSYLWLPFMILPVAAAVERIPPSLLEASADLGSHGLATFRRIVLPMALPG
                     MVAGAISTFSLTLGDYVTPMLVGGEGSDFIGNVVYSNVGVTNNIPFAAAYAVLPLGVM
                     GVFLLVARKMGAFDAL"
     gene            complement(1113..2261)
                     /locus_tag="VEQ16_02275"
     CDS             complement(1113..2261)
                     /locus_tag="VEQ16_02275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014457370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP62682.1"
                     /translation="MKEAFKRQFTRFALCLSVTLPVAQGAAAAEPLQTIGKGEGVLNV
                     VAWEGYAQDDWVKPFEAATGCQVHAKYAGSSDEMVALMRSGGGDQYDVVSASGDATLR
                     LIYGHNVQPINMALIPAWKNFIPQLQSPDFNTVKGVHYGVSYEWGPNTLLYNTKTFPT
                     APASWAVIYDPKYKGQVTVPDNPIQIADAALYLSKSDPSLGITDPYELTQPQMDAVTK
                     LLKSQAGLIKKYWALASDEIQLFTSGDAVVGAAWPYQTNTLQAAKVPVADTIPAEGAT
                     GWADTWMVSAKAQHPNCAYQWINWVTTPHVQAQQAIYFGETPANTLACKEMDTQQAGA
                     CAQYHANAPASYFDEIHFWKTPRTECGNGKNDCLDYTAWQRAWQAIKG"
     gene            complement(2258..3280)
                     /locus_tag="VEQ16_02280"
     CDS             complement(2258..3280)
                     /locus_tag="VEQ16_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010668236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYP62683.1"
                     /translation="MEVKTLSSPIVQLEGIAKSYSGAVALEQLDLEVRTGEFFTLLGP
                     SGSGKTTTLRLIAGFERPDTGRILLDGADVADLPPFERQVNTVFQDYALFPHLTLIEN
                     VAYGLRAKKMPKAQAHEEAEKALASVRLTEYGARKPAQLSGGQRQRVALARAMVNKPR
                     VLLLDEPLGALDLKLRHQMQAELKRLQHETGITFIYVTHDQDEALSMSDRIAVFSRGR
                     IEQVGTPFDLYERPASEFVADFVGTSNLLGKALLRPEKIHLQPLDAQVPAGCAAKPCM
                     VREATYLGAVTRYQVTLENGSSLSVMESNSVPLGNRLRLSAGDHILAVWPEAAAITIG
                     NKGEGT"
     gene            3424..>4465
                     /locus_tag="VEQ16_02285"
     CDS             3424..>4465
                     /locus_tag="VEQ16_02285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYP62684.1"
                     /translation="MTNNLKFYINGEWVDPVVPNRIPVINPATEEAFTEISGGSGADV
                     DRAVAAAKAAFRTYSRTSHKERLDLLKRCLEIYNRRYDEIAAAVTQEMGAPISLSKEA
                     QVFVGQGHFQALIDKFENFEYYETRGTTRVVKEPIGVCGLITPWNWPLNQIVCKVAPA
                     LAAGCTMVLKPSEIAPVNALIFAEILHEAGVPKGVFNLVNGTGPDVGQKLAEHPDVDM
                     MSFTGSTRAGIIVAREAANTVKRVCQELGGKSANILLPDVDLDLRVRQGIGACFINSG
                     QSCDAATRMLVPRALHDEAVAIAADEAGKQVTGDPLAEGTVLGPLVSQMQWDKVQRLI
                     KAGIDEGATLAAG"
BASE COUNT          855 a         1322 c         1492 g          796 t
ORIGIN      
        1 ccagatcaga gcatcagagc gcatcgaaag ctcccatctt gcgtgccacc agcaggaaca
       61 cgcccatcac gcccaacggc agcacggcgt aagcggcggc aaacggaatg ttattggtga
      121 cgccgacatt ggaatagacg acattgccga tgaagtccga gccttcgccg cccaccagca
      181 tgggggtgac gtagtcgccc agcgtgaggg agaaggtgga gatggcgccg gccaccatgc
      241 cgggcagcgc catgggcagc acgatgcggc ggaaagtggc gaggccgtga gagccgagat
      301 cggccgaggc ttccagcaac gagggcggaa tgcgctccac cgccgcggcc acgggcaaaa
      361 tcatgaaagg cagccagaga taggagaaga cgatccacat ggcccagttg ctgtagccga
      421 tatgcatgcc gggcaggccg atggcggaga gcgcccagtt gagcacgcca tcatgcgaga
      481 ggatgaggcg ccatgcatag acgcgcgcca gatagctcga ccagagcggg atcatcaccg
      541 ccgccatcat gccggcgcgc aggcgcgggc cggcgaggcg gatcatggcg taggcgacag
      601 gccaagccat aatcacatcg gtgatcgtca ccgccgccgc aatgaaaatg gtgcgcgcgg
      661 cgatgtgcgc ataggtgggg tccgccagca gggactggaa attcaccagc gagaagccgg
      721 gaatcaaggc gccggacatg tcgtcgacag tccagaacga ggtgatgaat gttgctccga
      781 tggctgccaa gtacaaccct acaaaccaga cggttggcag gctgagcagc gacatgaccg
      841 cgacccagcc gcggcgccag gagacggatg acaatgcttt caaggggctc atgatacgct
      901 ccggtgcatg gggttttgcc cctgcaccct caaccagagg ccgggcccct ggacatcaac
      961 aaaatcggtt tgggaaaggg gatgccatcc cccacactcg aaacaaacgt gcagagcggg
     1021 catccccttt cccaaaccgg gcggcttcca agggccttgc ggcccttggt gggggtccag
     1081 ggggcaatgc cccctggatt ccaaccggga gctcatccct tgatggcctg ccaagcacgc
     1141 tgccaggcgg tgtagtccag gcaatcattc ttgccgttgc cgcattcggt gcgcggggtt
     1201 ttccagaaat ggatttcgtc gaaataggag gcgggcgcgt tggcgtggta ttgcgcgcag
     1261 gcgccggcct gctgtgtgtc catttccttg caggccaggg tattggcggg tgtttcgccg
     1321 aaatagatgg cctgctgggc ctgcacgtgc ggtgtcgtca cccagttgat ccactgatag
     1381 gcgcagttgg ggtgctgggc cttggcggag accatccagg tatcggccca gccagtggcg
     1441 ccttcggcgg ggatggtgtc agccacgggc actttggcgg cctgcagcgt gttggtctgg
     1501 tacggccagg cggcgccgac gacggcatca cccgaggtga agagctggat ttcgtcggag
     1561 gccagggccc agtatttctt gatgagcccg gcctgcgact tcagcaattt cgtcacagca
     1621 tccatctgcg gctgcgtcag ctcgtacggg tcggtgatgc cgagcgacgg gtcggacttg
     1681 gacagataca gggccgcgtc ggcgatctgg atgggattat ccggcacggt gacctggccc
     1741 ttatattttg ggtcatagat cacagcccag gaggccggcg cggtggggaa cgtcttggtg
     1801 ttgtagagca gcgtgttggg gccccattcg taggagacgc cgtaatgcac gcccttcacg
     1861 gtgttgaaat ccgggctctg cagctgcgga atgaaattct tccaggccgg gatcagcgcc
     1921 atgttgatgg gctggacgtt gtggccatag atgaggcgca acgtggcatc gccggaagcg
     1981 gaaacgacat cgtactggtc gccgccgccg gagcgcatca gcgccaccat ttcgtcggac
     2041 gagccggcat atttggcatg cacctggcag ccggtggccg cctcgaaggg cttcacccaa
     2101 tcatcctggg cgtagccttc ccaggccacg acattgagca cgccttcgcc cttgccgatg
     2161 gtctgcagcg gctctgcggc cgcggcaccc tgcgcaacgg gcagcgtgac ggaaagacaa
     2221 agtgcaaacc tggtaaattg tctcttgaaa gcttctttca tgtaccctct cccttgttgc
     2281 cgatggtgat cgccgcggct tctggccaga cggcgaggat atggtcgcca gcgctcagcc
     2341 gcagcctgtt gccgagcggg acgctgttgg attccatgac cgaaaggctg gagccgtttt
     2401 cgagcgtgac ctggtagcgc gtgacggcgc cgagataggt cgcctcgcgc accatgcagg
     2461 gcttggcggc gcagccggct ggcacctggg cgtcgagcgg ctgcaggtgg attttctccg
     2521 gccgcagcag cgccttgccg agaagattgg aggtgccgac gaagtccgcg acaaattccg
     2581 aagccgggcg ttcatacaaa tcgaacggcg tgccgacctg ctcgatgcgc ccgcgcgaga
     2641 atacggcgat gcggtcgctc atcgagagcg cctcgtcctg gtcgtgcgtg acatagatga
     2701 aggtgatgcc ggtttcgtgc tggaggcgtt ttagctcggc ctgcatctgg tggcgcagct
     2761 tgaggtccag cgcaccgagc ggctcgtcga gcagcagcac gcgcggtttg ttgaccatgg
     2821 cacgggcgag ggccacgcgc tggcgctggc caccggagag ctgggccggt tttctggccc
     2881 catattcggt gaggcgcacg gaagcgaggg ccttttcggc ctcctcatgg gcttgcgctt
     2941 tcggcatctt cttggcgcgc agcccatagg ccacattttc gatgagggtg agatgcggga
     3001 acagcgcgta atcctggaac accgtgttca cctggcgctc gaaaggcggc aggtccgcca
     3061 cgtcggcgcc atccagcagg atgcggcccg tgtccggccg ttcgaaaccg gcaatgaggc
     3121 gcagggtcgt tgttttgccg gaaccggaag ggccgagcag ggtgaaaaac tcgcctgtgc
     3181 ggacttcaag gtcgagctgc tccagcgcaa ccgcgccgct ataggatttg gcgatgcctt
     3241 ccagctgcac gatgggtgac gaaagggtct tcacttccat attttactcc tgatcctagc
     3301 tggcacggtt caggcgcggg tcagttgacc gaggaacaca gcatggagcg cgcaatgtgt
     3361 tccgaggtca acagcgttgc gggatttcta gccaatatgg gtacatctca ggaggattag
     3421 gatatgacga acaacctgaa attctatatc aacggtgagt gggtggaccc ggtggtgccc
     3481 aaccgcattc ccgtcatcaa ccccgccacg gaagaggctt ttaccgagat ctcaggaggt
     3541 tctggtgcgg atgtggatcg tgccgtggcc gcggccaagg cggcgttccg cacctattcg
     3601 cgcaccagcc ataaggagcg cctcgatctg ctgaagcgct gcctggagat ttataaccgc
     3661 cgctatgatg agattgccgc tgcggtaact caggaaatgg gcgcgccgat cagcctctcg
     3721 aaggaagcgc aggtgttcgt cggccagggg catttccagg cgctcatcga taagttcgag
     3781 aatttcgaat attacgaaac ccgcggcacc acccgcgtgg tgaaggaacc gatcggcgta
     3841 tgcgggctca tcacgccgtg gaactggccg ctgaaccaaa ttgtctgcaa ggtggcgccc
     3901 gcgctggcgg ccggctgcac catggtactg aagccgtccg aaatcgcgcc ggtcaacgcg
     3961 ctgatcttcg cggaaatcct gcatgaggcg ggcgtgccga agggcgtgtt caacctcgtc
     4021 aacggcactg ggccagatgt cggccagaag ctggccgagc atccggatgt ggacatgatg
     4081 tccttcaccg gctcgacccg cgccggcatc atcgtggcgc gcgaggcggc caatacagtg
     4141 aagcgcgtgt gccaggagct gggcggcaag tccgccaaca tcctgctgcc ggatgtcgat
     4201 ctcgatttgc gcgtgcgcca gggcatcggc gcctgcttca tcaattccgg ccagagctgc
     4261 gatgccgcca cccgcatgct ggtgccgcgc gccctgcacg acgaggccgt cgccatcgcc
     4321 gccgatgagg ccggcaagca ggtgaccggt gacccgctgg ccgaaggcac ggtgctcggc
     4381 ccgctcgtca gccagatgca gtgggacaag gtgcagcgcc tcatcaaggc cggcatcgac
     4441 gaaggcgcca ccctcgccgc cggcg
//
LOCUS       DASQCV010000153         2886 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1190722, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000153 DASQCV010000000
VERSION     DASQCV010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2886
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1190722"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..963)
                     /locus_tag="VEQ16_02290"
     CDS             complement(<1..963)
                     /locus_tag="VEQ16_02290"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011385956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HYP62685.1"
                     /translation="MSDAIVIASYARTPMGGFQGVFAPVSSVTLGATAVKAAVERAGV
                     APEAVDRVYMGCVLPAGLGQAPARQAALGAGLPISAEATTVNKMCGSGMQAAIMAHDA
                     LVAGSADVIVAGGMESMTNAPYLMPKHRGGARIGHDVIKDSMMLDGLEDAYTIGKPMG
                     AFAQDTANEYQIGRAEQDEYALRSLERAKTAISSGAFAKEVVPVKVAGKGGEIAIEVD
                     EQPGNAKPDKIPGLKPAFTKDGTITAASSASISDGAAALVMTRESVADKLGLKKVARI
                     AGHAAHAHEPSKFVTAPVFAIRKLLAKTGWNVADVDLFEVNEAFA"
     gene            complement(995..2122)
                     /locus_tag="VEQ16_02295"
     CDS             complement(995..2122)
                     /locus_tag="VEQ16_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004272580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYP62686.1"
                     /translation="MVLTDIQTAIQDSIRDFAQNEIRPNSFAYEEAKGYPPSLFTRLA
                     EMGLMGMTAPDEVGGAGADYVSYALALIELGAADGALSTIVSIQNSLLINGILKFGTS
                     SQQARFLPELTSGRMIGAFALTEADAGSDAAAISTRATRVEGGWKLNGAKQFITSGKI
                     AGVTMVYAVTDPAAGKKGISGFLVPTDSKGYVVDKVEHKLGQGASDTCAIRFDDLFVP
                     DDLLFGPEGQGYRLALSNLEVGRIGIAAQCIGMAQAALEIAVSYAKDRKSMGKPIIEH
                     QAVGFRLADLAAKLEAARHLVLHAASLKDADLPCLKEASMAKLVASETAEQVCSGAIQ
                     TLGGYGYLEEFGLAKIYRDVRVCQIYEGTSDIQRMVIARAL"
     gene            2203..2826
                     /locus_tag="VEQ16_02300"
     CDS             2203..2826
                     /locus_tag="VEQ16_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP62687.1"
                     /translation="MNKPAATASPFRNAQQRENDRAAKREAVLLAAVRMFNQRGFHAT
                     SLDDVAASLGISKPLIYHYLGAKDQVLFECMRIGLEQLRAAAEEGAGLPGTGMDRLKR
                     FLRRYAECIMEDFSRCVIRTGDEVLSPDIRPSFRALKSEIDQSMRKLIADAAADGSAK
                     VSDVKLTAFAFAGALSWTARWHEPGGPLEPAEIAEQLVEVLTRGIMP"
BASE COUNT          517 a          890 c          959 g          520 t
ORIGIN      
        1 ggcgaaggcc tcgttgacct cgaacaaatc gacatcggcg acattccagc ccgtcttggc
       61 cagcagcttg cggatggcga agaccggcgc ggtaacgaat ttggacggct cgtgcgcatg
      121 ggcggcatgg ccggcgatgc gggcaacctt cttcaggccc agcttgtccg ccacggattc
      181 acgggtcatc accagggcag cggcgccatc cgagatggag gcggagctgg ccgcggtgat
      241 ggtgccgtcc ttggtaaaag ccggtttcaa gccagggatt ttgtccggct tggcattgcc
      301 gggctgctca tcgacctcga tggcgatctc gccgcctttg cccgccacct tcaccggcac
      361 cacttccttg gcgaaggcgc cggaggagat ggcggtcttg gcgcgctcca gcgaacgcag
      421 cgcatattca tcctgctcgg cgcggccgat ctgatattca ttcgccgtgt cctgggcgaa
      481 ggcgcccatg ggcttgccga tagtgtaggc gtcctcaaga ccatccagca tcatggagtc
      541 cttgatgaca tcatggccga tgcgggcgcc gccgcgatgc ttcggcatca gatagggcgc
      601 gttggtcatg ctctccatgc cgccggcgac gatgacatcg gccgagccgg cgacgagggc
      661 gtcatgcgcc atgatggcgg cctgcatgcc ggagccgcac atcttgttca ccgtggtggc
      721 ttccgccgag atgggcaggc cggcgccgag cgcggcctgg cgggccgggg cctggccgag
      781 gccggcgggg agcacgcagc ccatatacac acggtcgacc gcttcagggg ctacgccggc
      841 ccgctccacg gcagccttca cggcggtggc gccgagggtg acggaggaga cgggagcaaa
      901 aacgccctgg aacccgccca tcggggtgcg ggcgtaagag gcgatgacga ttgcatcaga
      961 catagcgttt ctcctgaagg attcctgggg ataattagag ggcacgggca atgaccatgc
     1021 gctggatgtc ggacgtgcct tcgtagatct ggcaaacacg cacgtcgcgg tagattttgg
     1081 ccaggccgaa ttcctcaaga tagccatagc cgccgagcgt ctggatggcg ccggaacaga
     1141 cttgctccgc cgtttcggag gcgacgagct tggccatgga ggcttccttg agacagggca
     1201 aatcggcatc cttcagcgag gccgcatgca gcacgagatg gcgcgcggct tccagtttcg
     1261 cggcgaggtc ggcgaggcgg aagccgacag cttggtgctc gatgatgggc ttgcccatgg
     1321 atttgcggtc tttggcgtag gaaaccgcga tttccagcgc tgcctgggcc atgccgatgc
     1381 attgcgcggc aatgccgatg cggccgactt cgagattgga gagggcaagg cggtagccct
     1441 ggccttcggg gccgaagagc agatcgtcag gaacaaaaag atcgtcgaaa cggatggcgc
     1501 aggtgtcgga cgcgccctgg ccgagtttgt gctcgacctt gtccaccaca tagcccttgc
     1561 tgtccgtggg gaccagaaag ccggaaatgc ccttcttgcc cgcggctggg tcggtgacgg
     1621 cgtagaccat cgtcacgccc gcgattttgc cggaagtgat gaattgtttg gcgccgttca
     1681 gcttccagcc gccttcaacg cgcgtggcgc gggtggagat ggcggcggcg tcggagccgg
     1741 catcggcttc cgttagcgcg aaggcgccga tcatgcggcc ggaggtcagc tcaggcagga
     1801 agcgggcctg ctgcgacgag gtgccgaatt ttaagatgcc gttgatgagc aggctgttct
     1861 ggatggagac aatggtggag agcgccccat ccgccgcgcc cagctcgatg agcgccaagg
     1921 cataggacac ataatccgcc ccggcgccgc caacctcgtc cggcgccgtc atgcccatca
     1981 gccccatctc ggccaggcgg gtgaacaagg aaggcgggta gcccttggcc tcttcgtagg
     2041 caaagctgtt cgggcggatc tcattctgcg cgaagtcacg gatgctgtcc tggatcgcgg
     2101 tctggatatc ggtgagaacc actgacttcc tcgtagatta tttactcttg agtaagtggc
     2161 acgggccgct atactcgtca aggcaatgat gcagggtcca acatgaataa accagccgcg
     2221 acggcgtcgc cgttccgcaa cgcccaacag cgcgaaaatg atcgcgccgc caagcgcgag
     2281 gcggtgctgc tggcagccgt gcgcatgttc aaccagcgcg gcttccacgc cacctcgctg
     2341 gacgatgtcg ctgcctcctt gggcatctcc aagccgctga tctaccatta tctcggcgcc
     2401 aaggatcagg tgctgttcga atgcatgcgc atcgggctgg agcagctccg cgcggcggcg
     2461 gaagaaggtg ctggcctgcc cggcacgggc atggaccggc tgaaacgctt cctgcgccgc
     2521 tatgccgaat gcatcatgga agatttcagc cgctgcgtga tccgcaccgg cgatgaggtg
     2581 ctctcgccgg acatccgccc ctcgttccgc gccctgaaat ccgaaatcga ccagtccatg
     2641 cgcaaactca tcgccgacgc cgcggcggat ggctccgcca aggtgtcaga cgtgaaactc
     2701 accgccttcg ccttcgccgg tgccctgagc tggacggccc gctggcacga acccggcggc
     2761 cccctggagc ccgccgaaat cgccgagcaa ctcgtcgagg tcctgacgcg ggggattatg
     2821 ccgtaggggc tagaggctgt ttcataagtc tactctggcg gccgccaagc ggcgattttc
     2881 tgcact
//
LOCUS       DASQCV010000154         3594 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_362280, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000154 DASQCV010000000
VERSION     DASQCV010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3594
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_362280"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..456)
                     /locus_tag="VEQ16_02305"
     CDS             complement(13..456)
                     /locus_tag="VEQ16_02305"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0052717 - tRNA-specific adenosine-34
                     deaminase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HYP62688.1"
                     /translation="MVAPMVTALKLACEAAEAGEVPVGAVLSNDDGVVFATARNYVEQ
                     EQNPAAHAEMLVLAQAWAVRGGKYFSDCTLTVTMEPCVLCAGAIAAFRVGKLVFGAYD
                     PKSGAVEHGPRVFTHASTHHKPEIVGGVREAECSALLKAFFAAKR"
     gene            504..1214
                     /locus_tag="VEQ16_02310"
     CDS             504..1214
                     /locus_tag="VEQ16_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019461358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HYP62689.1"
                     /translation="MKKRPLIGLTLDAEPAGGWSKYPWYALRQNYTEAVNAHGGLAIA
                     LPHDTALAEEYLDRLDGLIVTGGAFDVDPSLYGETERHETVELKEDRTMAELAFLRGA
                     LARNMPVLGICGGQQLLAVALGGTLYQHIPDAIPDALEHEQKTSHYEPGHDVRIVPKT
                     RLYDIVGPKMRANTSHHQSVRSPGRSIVNALAPDGVIEGVEDPAQKFCIGVQWHPEYF
                     VDPGDKALYAAFIAACHE"
     gene            1207..1947
                     /locus_tag="VEQ16_02315"
     CDS             1207..1947
                     /locus_tag="VEQ16_02315"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008851817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HYP62690.1"
                     /translation="MSEEEEKRGERIAKFLSRAGVASRRDAEAMIEAGRVRLNNEPVT
                     QPATFVKQGDMVVVDGKPVSEPDRTRLWRYHKPDGLVTTHKDPEGRPTVFEKLPPGLP
                     RVISVGRLDLTSEGLLLLTNDGALARKLELPETGWLRRYRVRVHGGVHPDKLKRLADG
                     ITVEGVKYGPIGAAVDSVQRSNTWLSMSLREGKNREIRRVMQALELPVTRLIRVAYGP
                     FQLGHLPRGAVEEVPGKILREQVPGLGK"
     gene            1997..2545
                     /gene="rsmD"
                     /locus_tag="VEQ16_02320"
     CDS             1997..2545
                     /gene="rsmD"
                     /locus_tag="VEQ16_02320"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003616913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HYP62691.1"
                     /translation="MTMSHSPRIIAGAWKGRKLAAPAGLGTRPTNARARQAVFDILAH
                     APWCDLRGAKVLDVFAGTGAYGLEALSRGAVSAVFFEQSPAALAALRVNVAACKANAG
                     VVAGDVLSAPPGEPHNLVFLDPPYGEDFILKALAVLRARNWIAPGAIIVAELGPGDEM
                     ETPNLLAERTHGKAGVKIWREE"
     gene            complement(2697..2975)
                     /locus_tag="VEQ16_02325"
     CDS             complement(2697..2975)
                     /locus_tag="VEQ16_02325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62692.1"
                     /translation="MTLKPALGAAAIAVLLIGSTQAARADGDDWRGPSVFFSFGGPAY
                     YAPPPPPPPPAYYYAPGPVYAAPGYYAPPAYYAPPGYWRCHHRDDDDD"
     gene            complement(3132..>3594)
                     /locus_tag="VEQ16_02330"
     CDS             complement(3132..>3594)
                     /locus_tag="VEQ16_02330"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HYP62693.1"
                     /translation="CLGHQLLAQACGGHVGLMEGAPEVGVSQVPVGGDSLFAGVPELC
                     TCFQWHGAEVKRLPEGAKLLASTDVCGVQAFRLGDAAYGLQFHMELTRTTAQEWGAIP
                     EYAAALEKVHGPGSLPGLQADVAANYAALNAAADVIFTNFLKIAEGALAAA"
BASE COUNT          655 a         1243 c         1094 g          602 t
ORIGIN      
        1 cgaggtccgg catcagcgct tcgccgcgaa aaacgctttc agcagggcgg aacattccgc
       61 ctcgcgcaca ccgcctacaa tctctggttt gtggtgcgtg ctcgcgtgtg tgaacacgcg
      121 cggcccatgc tccaccgccc cgctcttggg gtcgtaggcg ccgaacacca gcttgcccac
      181 ccggaaggcg gcaatcgcgc ccgcgcacag cacgcagggc tccattgtca ccgtcagcgt
      241 gcaatctgaa aaatatttgc cgccgcgcac ggcccaggcc tgggccagca cgagcatctc
      301 cgcatgcgcc gccggatttt gttcttgttc cacataattg cgggctgtgg cgaagacgac
      361 tccgtcatca ttgctcagca ccgcccccac gggaacctcg cctgcttcgg cagcttcgca
      421 ggcgagtttg agggctgtta ccattggtgc gaccatgcgc gcagatttgc attagccagc
      481 gcgccgggtc taggtgctaa cccatgaaaa aacgcccttt gatcggtttg acattggatg
      541 ccgaacccgc cggcggctgg tccaaatatc cctggtacgc gctgcggcag aattataccg
      601 aggcggtgaa tgcccatggc ggtctcgcca tcgcgttgcc gcacgacact gcgctggcgg
      661 aagagtatct cgaccggctg gacgggctga tcgtcaccgg aggcgctttc gatgtcgacc
      721 cctctctcta tggcgagacg gaacggcatg aaaccgttga gttgaaagag gaccgcacca
      781 tggcggagct cgccttcctg cgcggcgccc tggcccgcaa catgccggtg ctcggcattt
      841 gcggcggtca gcagctgctc gccgtcgcac tcggcggcac gctctaccag catatccccg
      901 acgccatccc ggacgcgctg gagcatgagc agaagaccag ccattacgag ccgggccacg
      961 acgtgcggat tgtcccgaaa acccgcctat acgatatcgt gggaccaaaa atgcgcgcca
     1021 acacctccca ccaccaatcc gtccgttccc ccggacgcag cattgtcaac gccttggcgc
     1081 cggatggcgt catcgaaggc gtggaggacc cggcgcagaa attctgcatc ggcgtgcaat
     1141 ggcatccgga atatttcgtc gatcccggtg acaaagccct ctatgccgcc ttcatcgccg
     1201 cgtgccatga gtgaggaaga agaaaaacgc ggcgagcgca tcgccaaatt cctctcccgt
     1261 gccggggtgg cgtcccggcg cgatgccgag gcgatgatcg aggccggccg cgtgcgcctc
     1321 aacaacgagc ccgtcaccca gcccgccacc ttcgtaaagc aaggtgacat ggtggtggtg
     1381 gacggcaagc ccgtgtccga gccggaccgc acccgcctct ggcgctatca taagccggac
     1441 ggcctcgtga ccacccacaa ggacccggaa ggccgcccga ccgtcttcga gaaactcccg
     1501 cccggcttgc cgcgcgtcat ctccgtcggc cggctcgacc tcacgtccga aggcctcctg
     1561 ctcctcacca atgacggcgc gctggcgcgc aaactggaac tgcccgaaac cggctggctg
     1621 cgccgctacc gcgtgcgtgt gcatggcggc gtgcatccag acaagttgaa acgcctcgcc
     1681 gacggcatca ccgtcgaagg cgtcaaatac ggtcccatcg gcgccgccgt ggactccgtc
     1741 cagcgctcca acacctggct ctccatgagc ctgcgcgaag gcaagaaccg cgaaatccgc
     1801 cgcgtcatgc aggccctaga actgcccgtc acccgcctca tccgcgtcgc ctacggcccc
     1861 ttccagctcg gccatttgcc ccgtggcgcc gtcgaggaag tgcccggcaa gattctgcgc
     1921 gaacaggtgc cggggctggg gaaatgaaca ttgggcgatg ccgcaggggg ctgcgcgccc
     1981 cctgccaatc acactcatga ccatgtctca tagcccccgg atcattgccg gcgcctggaa
     2041 gggccggaag ctcgccgccc cggctggcct gggcacccgc ccgaccaacg cccgcgcccg
     2101 ccaggccgtg ttcgacatcc tggcccacgc gccctggtgt gatttgcgcg gggcaaaagt
     2161 gctggatgta ttcgcgggaa caggcgccta cgggctggaa gccctctcgc gcggcgcggt
     2221 ctcggcggtg ttcttcgagc aatcccccgc cgccctggcg gccctgcgtg tcaacgtcgc
     2281 cgcctgcaag gccaacgccg gcgtggtggc gggagacgtc ctgtccgctc cgcccggcga
     2341 gccgcacaat ctggtcttcc tcgatccacc ctacggagag gatttcatcc taaaagccct
     2401 ggcggtcttg cgcgcgcgca actggatcgc ccccggcgcc attatcgtcg ctgaactcgg
     2461 tcctggggat gagatggaaa cgcccaacct tcttgccgaa cgcacccatg gcaaggccgg
     2521 cgtcaaaatc tggcgggaag aataggggca agcctaatca acggatgttc gcggggccga
     2581 aaccggaccg ccgcctgccg gccgatgagc ggcggtcagc caagccaaat cttctcccca
     2641 atcttcttcg gggccattgc tgaagccaag gatcatctgt gccgtggctt cagcgtttaa
     2701 tcgtcatcat cgtcccggtg gtggcagcgc caataacctg gcggcgcata ataggccggc
     2761 ggcgcgtaat agcccggcgc cgcatatacc ggtccaggcg cgtaataata ggctggaggc
     2821 ggcgggggtg gaggtggtgc gtaataagcc gggccgccaa agctgaaaaa gacgctcggc
     2881 ccgcgccaat cgtcaccgtc agcgcgcgcg gcctgggtgc tgccgatgag aagcacggcg
     2941 atggcggcgg cgccgagagc gggtttgagt gtcatgatca cctcctacac cctggcggaa
     3001 tgctccgccc ttcctgggtg cgatgtgcat ctgcttcccc gaatgtgccg aaaccgggca
     3061 ggatttgcag cgaaaaaatg gcagatgcag tgatgactga attttaaacg cgggaacatc
     3121 tgccggacgg gttaggccgc cgccagcgcg ccttccgcaa tcttcagaaa attcgtgaaa
     3181 atcacatccg ctgctgcgtt cagcgcggcg taattcgccg ccacgtcggc ctgcaggcct
     3241 ggcaggctgc ctggcccgtg cactttctcc aaggccgccg catattccgg gatggcgccc
     3301 cattcctgcg ccgtggtgcg ggtgagttcc atgtggaatt gcagcccata ggccgcatcg
     3361 cccaggcgga aggcctgcac accgcaaaca tccgtgctgg ccagcagctt tgccccctcc
     3421 ggcaggcgct tcacctccgc gccatgccat tggaagcagg tgcagagttc cggcacgccc
     3481 gcgaagagcg aatcgccccc cactggcacc tgcgagaccc cgacctccgg cgcgccctcc
     3541 atcagcccca catgcccgcc gcaggcctgc gccagcagct gatggccgag gcat
//
LOCUS       DASQCV010000155         1721 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1523202, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000155 DASQCV010000000
VERSION     DASQCV010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1523202"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VEQ16_02335"
     CDS             complement(<1..262)
                     /locus_tag="VEQ16_02335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62694.1"
                     /translation="MIGSAGGGVVSVEAGAAAGSVAGDAVSVDAGSVGGGAGSGVVSA
                     EFAAATAAGSVAGDAVSVDADSMGGGAGSVKADAVVGSAGGGV"
     gene            complement(272..493)
                     /locus_tag="VEQ16_02340"
     CDS             complement(272..493)
                     /locus_tag="VEQ16_02340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62695.1"
                     /translation="MAVGPADRDGGAVSAGAVAASVGSSVVSAEFAAAIGPVGSGAAS
                     VLVGVVAGAASGDAVSVDAGSVGCGAGSV"
     gene            537..797
                     /locus_tag="VEQ16_02345"
     CDS             537..797
                     /locus_tag="VEQ16_02345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62696.1"
                     /translation="MLLARGDAFMQARDIASARLLYERAADAGNGRAALRVGESFDPA
                     FLGRIGVYRNTGDRRLALSWYRRARDLGDTEAAQLLERLESR"
     gene            complement(1019..1612)
                     /locus_tag="VEQ16_02350"
     CDS             complement(1019..1612)
                     /locus_tag="VEQ16_02350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62697.1"
                     /translation="MQHRQLALMTVWWTRAPQAFGRHYRPAARFGIRKHRDRPLRPDR
                     LITQQARFRIGSPSVLRRIRAPHYASTNPTSFSPIKYPDKYSAKLRRGNGGVSYRPPF
                     DTRARQLPKHGCASAIEAVRTRLVPTRRTFWAERCAWMAATLKEGAAEGDDSWRDLAL
                     VARDLAGQRPLDEIPLIARIAAATVEAFEERKRAAAA"
BASE COUNT          340 a          612 c          485 g          284 t
ORIGIN      
        1 ccacaccgcc gcccgccgag ccgaccacgg catcagcctt caccgaaccc gcaccgccgc
       61 ccattgagtc agcgtccacg gaaactgcat cgccggccac tgagccagct gcggtcgccg
      121 cagcaaactc cgccgaaacc acgccgctgc ccgcaccgcc acccactgag ccagcgtcca
      181 ccgaaactgc atcgccggcc actgagccag ctgcggcacc cgcctccacc gaaaccacgc
      241 cgccgcccgc cgagccgatc acggcatcag cctacaccga acccgcaccg caacccactg
      301 agccagcgtc caccgaaact gcatcgccgc tcgctgcgcc ggccacaaca ccaaccagca
      361 ccgaagccgc gccgctgccc accgggccga tcgccgcagc aaactccgcc gaaaccacgc
      421 tgctgcccac cgaagcggcc acggcaccag ccgaaaccgc gccgccgtcc ctgtcggcgg
      481 ggccgaccgc caaacgcgcc gagacggcgc gacccctccc agtcgagcag atcgctatgt
      541 tgctcgcccg tggtgatgca ttcatgcagg cgcgcgatat cgcctcggcc cggcttcttt
      601 atgaacgcgc agctgacgct ggaaacggcc gcgccgcatt gcgagtggga gagagtttcg
      661 atccagcttt tcttggccgc atcggggttt acagaaacac cggtgatcgc cggctcgctc
      721 tttcctggta ccgtcgtgcc cgcgatttag gcgatacgga ggcggcgcag ctgctcgaaa
      781 ggctggagtc acgatagcct tcagttctcg actaaaacag aacctgcgca aatcgctggt
      841 acacatcgca atgaagcgcc gctgccatcc gaccgatatt acagaatctg gtgcaactag
      901 ccgaggcgat gccattcgat tttcctcgcc aatcagctcg caaggaataa gcgcgcgaca
      961 ctttgctaac gtcccggacg tcgacctatt gcactgtggc tttccgccct gccctctctc
     1021 acgcggcggc tgctctcttg cgctcttcga aagcttccac cgttgctgcc gcgatccgcg
     1081 cgataagcgg gatttcatca agcggccgtt ggcccgccag atcgcgcgcc accagagcaa
     1141 gatcgcgcca gctgtcatct ccctcggcgg cgccctcttt tagggtcgcg gccatccagg
     1201 cgcagcgttc ggcccagaat gtccgcctgg tgggaactaa ccgtgtgcgg accgcttcga
     1261 tagcactggc gcaaccatgt ttcggcagct ggcgggcgcg ggtatcaaac ggcgggcgat
     1321 aacttacgcc gccattaccg cgccgcaatt tcgcactata tttatccggg tatttgatgg
     1381 gcgaaaacga tgtcggattc gttgaagcat aatgtggcgc ccgaatcctc ctgagaacag
     1441 aggggctgcc aatacggaac cttgcctgct gtgtgatgag ccggtcgggg cggaggggac
     1501 gatcacgatg tttcctgatc ccaaagcgcg cggctgggcg atagtggcgg ccgaatgctt
     1561 gcggtgcgcg cgtccaccaa accgtcatca acgcgagctg gcgatgctgc acgcgatgtt
     1621 tccgaagaag aaatttatcg ccccaaaaga cgcgcagcct gggtatcttc gggggccgcc
     1681 catcaagcgg cgatcctcat aaagccaaag cctcgccgga g
//
LOCUS       DASQCV010000156         2169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1025734, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000156 DASQCV010000000
VERSION     DASQCV010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1025734"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2031)
                     /locus_tag="VEQ16_02355"
     CDS             complement(<1..2031)
                     /locus_tag="VEQ16_02355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62698.1"
                     /translation="MAELLSAGAVLGKEFDLDFAATLAEQSSGQAIAALDESRRRHLV
                     WARSGNTRCAFVHDKLRQTLLERLPSSRRQVLHGRAAQYLEQQDKKLLFELAYHFDAA
                     GQSGRALPYALAAAEKSRAQHSLEIAEQQYLIAARGASPTDKPTGFQIAEGLGDVFML
                     RGRYDQAARQFETALTLAQGDLEEARIEGKLGELIFKRGDVKNAGGHIERALRLLRRR
                     VPRWTVTFFLLVIWEVLVQALHTWCPRLIGDRRRRKNNSRELLAIRLYSRLAHLYWFH
                     RGTVPSLWAHLRGMNLAEHYPGTPELAQAYSEHAPGMSLLAYFKRGIAYAEKSLAIRQ
                     QLGDWWGQGQSLHFYGVVLYAGSRFKECIEKCSAAIRLLERTGDYWEVNIARYQIAAS
                     RYRLGDLAGAIREAQRMHQSGLELGDAQAAGISLDIWARASLGGLPAEIINAEVDRAT
                     GDVQRTAQVQAAKATWLLGNGKPDEAAALFEEAQRLVDQAGVKNAWVAPLLPWLATAL
                     RHELEKTSDLTSGKRRLLYGRAQYAAHRAWRLARKFQNELPHALREKGLLCARQGRAR
                     RARRFFDDSLAIAERQGAIYEHAKTLLARGQVGQELGWANASADVAEAKQVLATLEAG
                     VRGQAAAGSALEPPITLSLADRFDTVLDSGRRIASALSREEIFAAVRQAALKL"
BASE COUNT          407 a          690 c          682 g          390 t
ORIGIN      
        1 caatttcaag gccgcctgcc ggacggcagc gaagatttcc tcgcgcgata gggccgaggc
       61 gatacgccgg ccggaatcca gaaccgtatc gaaccggtct gccagagata gagtgatggg
      121 cggttccaaa gcgctgccgg ctgccgcctg gccgcgcacg ccggcttcca gagttgcaag
      181 aacctgcttg gcctcggcga cgtcggcgct ggcgttggcc cagccaagct cctggcccac
      241 ctggccgcgg gccagcaagg tcttggcgtg ttcgtagatc gctccctgac gttcggcgat
      301 ggccaagctg tcgtcgaaga atcggcgggc gcggcgggcc cggccctgac gggcgcagag
      361 caaacccttc tcgcgcaagg catgcggcag ttcattctgg aatttccggg ccaaacgcca
      421 ggcgcggtga gcagcgtatt gagcgcggcc atagagcagg cggcgcttgc ctgacgtgag
      481 atccgaggtc ttttccagct cgtgccgcag ggcagtggcc aaccacggca acagcggcgc
      541 cacccaggca ttcttcaccc ccgcctggtc aacgagtcgt tgcgcttcct cgaaaagcgc
      601 cgccgcttca tctggtttgc cattgcccaa gagccaggtg gctttggccg cttgcacctg
      661 cgcggtgcgc tgaacgtctc cggtggcccg gtcgacttcc gcgttgatga tttccgcggg
      721 cagtccaccc agggaggccc gcgcccaaat atccagactg atgccggccg cctgggcatc
      781 ccccagttcc agcccggact ggtgcatgcg ctgagcttcc cggatggcgc cggccagatc
      841 tccaagtcga tagcggctgg cggcaatctg atagcgggcg atattgactt cccaatagtc
      901 gccggtccgt tccaggagcc gaattgcggc ggagcatttt tcgatgcact ccttgaatcg
      961 cgagccggca tacaggacca cgccataaaa atggagcgat tggccctggc cccaccaatc
     1021 tcccaactgc tggcgaatgg ccagggactt ttccgcatag gcaatgccac gtttgaaata
     1081 agccagcaag ctcattcccg gggcgtgctc ggaataggct tgggctagct cgggagtgcc
     1141 cggataatgc tcggccaggt tcatgccgcg cagatgagcc cagagagaag ggactgtgcc
     1201 gcgatgaaac cagtacaggt gagcaagccg gctgtacagg cgaatagcga gaagctctct
     1261 gctattattt ttccggcgcc ggcggtcccc aatcagccgc ggacaccagg tgtgcaaggc
     1321 ttgcaccagg acttcccaaa tcaccagaag aaagaaggtg acggtccagc gcggcacccg
     1381 gcggcgcagc agacgcaggg cacgttcgat gtggccgccg gcgttcttga catcgccgcg
     1441 cttgaaaatc aactcgccca gtttgccctc gatccgggcc tcttcgagat cgccctgggc
     1501 caaggtcagg gcagtttcaa attgtcgcgc ggcctgatca taacggccgc gcagcatgaa
     1561 cacgtccccc aatccctccg caatttgaaa cccggttggt ttgtccgtgg gcgaggcgcc
     1621 gcgcgccgcg atcaggtatt gttgttcggc gatctccagt gaatgttgtg cccgtgattt
     1681 ctccgctgcc gccagggcat acggcaaggc ccggccgctt tgaccggcgg catcgaaatg
     1741 gtaggccagc tcgaacagca gctttttgtc ttgctgttcc aggtactggg cggcgcggcc
     1801 gtgaagcact tgacgccggc tgctcggcaa ccgttccagc aaggtctggc gaagtttgtc
     1861 gtggacgaag gcgcaccgcg tgttccccga ccgagcccag acgagatggc gacggcggct
     1921 ttcatcgaga gcggcgatgg cctggcccga actttgctcg gcaagcgtgg ccgcgaagtc
     1981 aaggtcaaat tccttcccca gaacggcgcc ggctgagagt agctccgcca cggcgccagg
     2041 caacatctca atacggcgga cgagaaaagc agctgcgtgc cgagacgatt gaacatccgc
     2101 cagggccagg ggatcgacgc gccagcctga tggttccgct atcagcgctc cggattccac
     2161 caacccttg
//
LOCUS       DASQCV010000157         1596 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3181857, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000157 DASQCV010000000
VERSION     DASQCV010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3181857"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1261)
                     /locus_tag="VEQ16_02360"
     CDS             complement(<1..1261)
                     /locus_tag="VEQ16_02360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62699.1"
                     /translation="MTCLATIFLDFQLPNAATWYYFSLILAIALFVKFNRFVSIRNVD
                     VLSLYLMVPGFLFLMDAAKVPVQTEGYRNLTLYGFIWLIGGSLVLFVRCLLDLTLISR
                     PALLPNINLSGLAWLSTAMFMCMAPIAARLPAELQQPVGKSTAAMVALSNASTQTLDQ
                     VQSLTGAERDEELTRFWVSRSIAILSHLAVIAALVLIGSIHFQNTTSGMAAATFYLLL
                     PYTAYHVGQAHHVFPAALLIWAVYCYRRPWLSGLLIGLGAGSCFFPALTLPVWLSFYR
                     KSGMGRFLAAFAVAAGISLGLTGLILWADGKLTQSLQLVFSLADWQPWKASDLESIWH
                     GIHGAYRLPVFILYLMFLITTSFWPRPKNLAYVVALCAALLIGIQFWYADRGGVYVLW
                     YLPLMMLIVFRPNLMDRRPPPLPPLPTW"
     gene            complement(1403..>1596)
                     /locus_tag="VEQ16_02365"
     CDS             complement(1403..>1596)
                     /locus_tag="VEQ16_02365"
                     /inference="COORDINATES: protein motif:HMM:NF015102.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha
                     C-terminal domain-containing protein"
                     /protein_id="HYP62700.1"
                     /translation="RPASELNLSVRACKCMNKLAINTVGELVHRTADELLEAKNFGMT
                     SLNEVREKLAAMGLKLRGD"
BASE COUNT          348 a          491 c          509 g          248 t
ORIGIN      
        1 gccaggtggg cagcggcggc agcggcggcg ggcggcggtc catcaggttc ggccggaaca
       61 cgatcaacat catcagcggc aaataccaca gcacgtacac gccgccgcgg tcggcatacc
      121 agaattggat gccaatcaac agcgcggcac acaacgccac cacgtacgcg aggtttttcg
      181 gccggggcca gaaggacgtg gtgatcagga acatcaaata caggatgaac accgggagcc
      241 ggtaagcgcc atggatgccg tgccagatgc tttccaggtc acttgctttc cacggctgcc
      301 agtccgccag gctgaagacc agttgcaggc tctgcgtgag cttgccgtcg gcccacagga
      361 tcaggcccgt cagacccaag ctgatgccgg ccgccacggc gaacgccgcg aggaatcgcc
      421 ccatgcccga cttgcggtaa aagctcagcc acaccggcaa cgtcaacgct gggaagaagc
      481 aactcccagc gcctaggccg atcagcagcc cggagagcca cggccggcgg tagcaataca
      541 ccgcccagat gagaagcgcc gccgggaaga catggtgcgc ctgcccgacg tgataggccg
      601 tgtacggcag aagcaagtaa aaggttgccg cggccatgcc cgaagttgtg ttctgaaaat
      661 ggatcgagcc gatcagcacg agcgccgcga tcaccgcaag atggctgagg atcgcgatcg
      721 atcggctcac ccaaaagcgc gtcaattctt catcgcgctc ggcgcctgtc aatgattgca
      781 cctgatccag tgtctgtgtg ctggcattgc tgagagcgac cattgctgct gtagacttgc
      841 cgaccggctg ctgcagttcc gcgggcaggc gggcggcgat tggggccatg cacataaaca
      901 tcgccgtgct cagccaggcc aacccggaaa ggttgatgtt cggcagcaga gcaggccggc
      961 tgatcagcgt caggtcgagc aggcaacgca cgaacagcac cagcgagccg ccgatcagcc
     1021 agatgaaacc gtagagcgtc aggttgcggt agccttcggt ctgcaccggc accttggcgg
     1081 catccatcag gaacaggaac cccggcacca tcaggtacag cgacagcacg tccacgttgc
     1141 ggatgctgac gaagcggttg aatttgacga acagggcgat cgccaggatc agcgagaagt
     1201 agtaccaggt tgccgcgttg ggcaactgga agtccaggaa gatggtggcc aggcacgtca
     1261 tgggaccacg tagaccgcga cgccggggcg tgaagaaagg caagtagccc cggcgaacca
     1321 ggtataacca atgccccggc cgattgcaac ggattgctgc cggaaatgtt cggccggtca
     1381 gggtttgcga gcggcgggcg gctcagtcgc cgcgcagttt cagccccatc gccgccagct
     1441 tttcgcgcac ttcgttcaac gacgtcatgc cgaagttctt ggcctccagc agctcatcgg
     1501 ccgtgcggtg aaccagctcg ccgacggtgt tgatggccag cttgttcatg cacttgcagg
     1561 cacgcaccga caggttcagc tcggacgccg gccggt
//
LOCUS       DASQCV010000158         2845 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2352727, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000158 DASQCV010000000
VERSION     DASQCV010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2845)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2845)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2845
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2352727"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(195..905)
                     /locus_tag="VEQ16_02370"
     CDS             complement(195..905)
                     /locus_tag="VEQ16_02370"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011389465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HYP62701.1"
                     /translation="MPFNFNLQSTLHVAIIMDGNGRWALARGLPRVAGHHAGAGAVRR
                     VVEAAPDLGIGILTLFAFSADNWRRPPSEVAALMELFVQFLYSETRRCVDNGVRLEVI
                     GRRDRLDDSVRRAIARTEASTAAGDRLRLRIAVDYSGRDAILAAVHGTDHLSRETVDG
                     ILGPPVDLLVRTGGERRLSDFLLWECAYAELVFSRRMWPDFGDEDLGGAVQEFRSRER
                     RFGGVPAEAAPREAHWLD"
     gene            complement(918..1220)
                     /locus_tag="VEQ16_02375"
     CDS             complement(918..1220)
                     /locus_tag="VEQ16_02375"
                     /inference="COORDINATES: protein motif:HMM:NF024988.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HYP62702.1"
                     /translation="MAGAPKLDRLIHERLRLGILSALSVNESLTFNELKKLLDSTDGN
                     LSVHARKLEEAGYISCAKSFDGRVPRTDYRLSAAGRRALERYLDHMEALIRAMRDR"
     gene            complement(1282..1752)
                     /locus_tag="VEQ16_02380"
     CDS             complement(1282..1752)
                     /locus_tag="VEQ16_02380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62703.1"
                     /translation="MGFTALAAARLAARQPEAAGWLTVWVAEAGLALLVGMAAAAHKA
                     ARARIPLFSPPGRRFIAGFVPAMTAGAVLTLVLFRTGAMGFLPGVWLLLYGASVVSGG
                     AASVRIVPLMGACFMAAGAVALLAPPSWGNLFLAAGFGGLHILFGIVITVKYGG"
BASE COUNT          552 a          947 c          845 g          501 t
ORIGIN      
        1 tttctttgcg ataaccgcat tggcttatcc cacatcgcgg ggaacttgta cgaccttccc
       61 ttcctcgtcg gtgagcatac tgtcgaggac agcgcaaagc cttttcattt ccggcaacat
      121 taaggcacac gactttcaga aaaacgggcc tggcggaaat ttgacggccg ccaggcgccg
      181 ccttcaagat gctcctagtc gagccagtgc gcttcgcgag gcgcggcttc ggccggcaca
      241 cctccgaacc ggcgctcgcg gctgcggaat tcctgcacgg ctccaccgag gtcttcgtcg
      301 ccaaaatccg gccacatcct gcgcgaaaaa accaactcgg cgtaagcaca ctcccagaga
      361 agaaagtcgc tcagccgccg ctcgccgccc gtgcgaacca gcaggtcgac cggcggcccg
      421 aggatcccgt ctacggtctc acgcgacaaa tgatcggtgc catgtacagc ggccagaatc
      481 gcatcgcgcc cggagtaatc gacggcaatc cgcagccgga gccgatctcc ggccgcagtt
      541 gacgcctcgg tgcgggcgat cgcgcggcgc accgagtcat ccaaacggtc gcggcggccg
      601 atgacttcca aacgaacacc attgtcgaca catcgcctgg tttctgagta cagaaactgg
      661 acgaacaatt ccatcagcgc cgcgacttcc gatggtggcc tccgccagtt gtcggccgaa
      721 aaggcgaaca gagtcagaat gccgattcct aggtccgggg cggcttccac cactcggcgc
      781 accgccccgg cacccgcatg atgcccggcc acgcgcggga ggccgcgcgc cagggcccag
      841 cggccgttcc catccataat gatcgcgaca tgcagagtac tttgcaaatt aaagttaaag
      901 ggcataaaaa aggtcgatca ccggtcccgc atcgcgcgaa tgagcgcctc catatggtct
      961 aggtaccgct ccagagcgcg tctgcctgcc gcgctgagcc ggtagtcggt gcgcggcacg
     1021 cggccgtcga acgatttcgc gcagctgata tagccggctt cttcgagctt ccgcgcgtgg
     1081 acgctcaagt taccgtcggt gctgtcgagc aacttcttta gttcgttgaa ggtcaacgat
     1141 tcgttcaccg aaagtgcgct cagaatcccg agtcgcaggc gctcgtgaat cagccggtcg
     1201 agtttgggag cgcccgccac tggcgtgttg gccggaccgg tctcccctct gcgttcccgc
     1261 tcacgccggg ctgctagaga cttagccgcc atatttcacc gtaatcacga ttccaaacag
     1321 aatatgcaac cctccaaaac ccgcggccaa aaacaggttg ccccaactgg ggggagccag
     1381 caaggccacc gctccggctg ccatgaagca ggcgcccatc aacggtacaa tccgcaccga
     1441 tgctgcaccg ccggaaacca cgctggcgcc atagagcaga agccacacgc ccggcaagaa
     1501 ccccatcgcc cccgtccgaa acaagaccag agtgagtacg gcgccagccg tcatcgccgg
     1561 cacaaatcca gcgatgaacc gccgtccggg cggagagaac aaaggtatcc gggcccgcgc
     1621 cgccttgtga gcggcagccg ccatcccgac cagtaaggca aggccggcct ccgctaccca
     1681 taccgtcagc caacccgcgg cctccggttg ccgcgccgcc agccgagctg ccgccagcgc
     1741 cgtgaatccc atcagcacgc ctccaacacc cggaaccgcc gtaaaggatc cggcccgttc
     1801 catggtccgt cggatatacc gcaagtgatc catggcccgc tcatgaagcg ccgcgggctc
     1861 gccaaccgct ggacggatcg cgcgaatcaa cgccacgaag cgatcatacg ctgtctggag
     1921 gagctatttc aagtactttt ccgagcaaag cgaatcgtac tgccctgatt caaacaaact
     1981 tgcctcaaat ctgggtgatt ttaccgagcc ctgtaactcg ctcatgtgat tttgaacacg
     2041 cggacgagac gcacctcgac ggcggtgacg agaaattgaa actaaagcag ttatccgccc
     2101 agtgagaaac ggaggcacct ggtatccggc tgatcgagag gtgcgtggcg gcggccgcta
     2161 actgtgcggt ggtctcgcga cgtacctgct gaccgacgcc cgcaggcccc cggtcaaagc
     2221 tacctgcgcg ccgcctattt ctcgccctca ggctcgagag atgaccttac tcacgatcta
     2281 cttttcgagc gaccacgttt ggactcggct tcgttttttc aaaactacat acccggtgct
     2341 ctcctttgtt agagcgggcg gcggccggcg cctaggcggc gatcctcatg tcgcaccggc
     2401 cctcgccgcc ctgtctctgg ggtacgcggg cggcctgttg cagtgtggcg tttgtggagc
     2461 gggcccaatt tccacaccga tgccgcccta cgattcctga tggtatcggc tggcacgccg
     2521 attgcgcatg cgaggcggac ggcggggcgc ggtctagtcg atgctggcgc ccgtctgtct
     2581 ggcgcctgag cggtgtggct ggagtgggca cggatgcctg tatctgttgt gtgcgctggc
     2641 cggatagggc gcattgagag atagccgccc tagtgcgagc gatctggcag gctccagggt
     2701 ttgcctcacg ggagggctcg gggcgggcct tagggaccgg ggcgtatcac cgcgcgcgcg
     2761 ctccttgccg gttgcgcggc gctgcccacc gccgtgctgg caacaggtgg gtgctgcggc
     2821 cttggtcgga cgcccactcg acgcg
//
LOCUS       DASQCV010000159         3630 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2519145, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000159 DASQCV010000000
VERSION     DASQCV010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3630
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2519145"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>3630)
                     /gene="gltB"
                     /locus_tag="VEQ16_02385"
     CDS             complement(<1..>3630)
                     /gene="gltB"
                     /locus_tag="VEQ16_02385"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010513790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HYP62704.1"
                     /translation="RSIIYKGMFLAASLTDFYPDLLDERFVSRFAIYHQRYSTNTFPT
                     WKLAQPFRMLAHNGEINTVAGNINWMQSHETRLAAEGMDEFLEFVKPVVQSGGSDTAA
                     LDNVFELLVRAGRDAPMAKTLMIPPSITNDATMPKAHRDLFSYCNAVMEPWDGPAAVA
                     ATDGRFVIAGLDRNGLRPLRYAITKTRLLIVGSEAGMVKFDEEDIIEKGAVGPGQTIA
                     VDLDETKFYHDTELKDMLAGRQDYSAWVKRITVIDHLVKTDAPEPVRLDAEGLRRRQL
                     AVGFTLEDMELLLHPMVETAQEAIGSMGDDAPLAVLSGKYRGLHHYFRQSFSQVTNPA
                     IDSLRETRVMSLKTRLGNLGNVLDENEDQCDLLQLDSPVLSTVEFEAMRKTMGAAACV
                     VDCTFKVANGEGGLRRAIERIRREAEEGVRAGCTHVILTDEAMGPERAPIPMILATGA
                     VHTHLVRQSLRTFTSLNVRAAECLDVHYFAVLVGVGATTVNAYLAQECIADRHARGLF
                     GKVSLKEAVGRYKKAVDKGLLKVMSKLGISVISSYRGGYNFEAIGLSRALVGEFFPGM
                     PSRISGIGLPGIAHEVLELHGSAWSGNVVPLEVGGQYRLRRNGETHAFDNNAIHLLQT
                     AVGNNSYKAYKKYSEMVRKQKPVALRDLLDFRTDGLTPISVDEVESITEIRKRLLSPG
                     ISLGALSPEAHETLSIAMNRIGARSDSGEGGEDPARAEPRPNGDNASSAIKQIASGRF
                     GVTAEYLNDCKEIEIKVAQGAKPGEGGQLPGFKVTELIAKLRHSTPGVMLISPPPHHD
                     IYSIEDLAQLIYDLKQINPRATVCVKLVSRSGIGTIAAGVAKAKADAILISGHVGGTG
                     ASPQSSIKYAGMPWEMGLSEAHQVLMLNRLRHQVVLRTDGGIKTGRDVVIAAMLGAEE
                     FGIGTASLVAMGCIMVRQCHSNTCPVGVCTQDEKLREKFEGSPEKVINLFSFVAEEVR
                     ELLAHLGFRSLREIVGRTDLLHQVSRGAEYLDDLDLNPILAQADPGPYARYCTREGRN
                     EVPETLDAQMIEDAEPFFMSGEKMQLQYNIRNTHRAIGTKFSSQIVAKYRKVKLQPDH
                     VTVRLRGSAGQSLGAFAVSGLKLEVYGDANDYVGKGLSGGIIVVRPSPASKLKTNLNT
                     IIGNTVLYGATAGTLFAAGEAGERFAVRNSGATAVVEGMGCNGCEYMTGGTVVSLGEV
                     GDNFGA"
BASE COUNT          687 a         1201 c         1077 g          665 t
ORIGIN      
        1 ggcaccgaaa ttatcgccca cctcaccgag gctcaccacc gtgccgccgg tcatatattc
       61 gcagccattg caacccatac cttccaccac ggcggtggca cccgagttgc gcacggcgaa
      121 ccgctcaccc gcctcaccag cggcaaacaa cgtgccggca gtcgcgccat aaagcaccgt
      181 gttgccgatg atggtgttga ggttggtttt gagcttggac gccgggctgg ggcgcaccac
      241 gatgatgccc ccagagagcc ccttgccgac atagtcattg gcgtcgccat acacttccag
      301 cttcaacccg ctcacggcaa aggcgccaag cgactgcccg gccgagccgc gcaggcgcac
      361 cgtcacatgg tccggctgca gcttcacctt gcggtatttg gcgacgatct gcgagctgaa
      421 cttggtgccg atagcgcgat gcgtgttgcg gatattatac tgcaactgca tcttctcgcc
      481 gctcatgaag aacggttcgg cgtcctcgat catctgcgcg tccagcgtct ccggcacctc
      541 gttgcggccc tcgcgcgtgc aatagcgcgc ataggggccg ggatcggcct gggccaggat
      601 cgggttgagg tcgagatcgt cgagatattc ggcgccgcgc gaaacctggt gcagcaggtc
      661 ggtccgcccc acaatctccc gcaggctgcg gaagccgaga tgggccaaca attcgcgcac
      721 ctcttccgcc acgaacgaga agagattgat caccttctcc ggcgagccct cgaatttctc
      781 ccgcagtttt tcgtcctgcg tgcacacgcc taccggacag gtgttggaat ggcattgccg
      841 caccatgatg cagcccatgg cgacgagcga cgccgtgccg atgccgaatt cctcggcccc
      901 cagcatggcg gcgattacca catcgcgccc ggtcttgatg ccgccatcgg tgcgcagcac
      961 cacctgatgg cgcagccggt tgagcatcag cacctgatgc gcttcggaca gccccatctc
     1021 ccacggcatg ccggcatatt tgatggagga ttgcggtgaa gcacccgtgc cgccgacatg
     1081 gcccgagatg agaatcgcat ccgccttcgc cttggccacg ccggccgcga tggtgccgat
     1141 gcccgagcgc gacaccagct tcacgcagac cgtcgcgcgc gggttgatct gcttcaggtc
     1201 gtaaatgagc tgagccagat cctcgatgga atagatatcg tgatgcgggg gcggggagat
     1261 cagcatcacc cccggcgtgg aatggcgcag cttggcgatc agctccgtca ccttgaagcc
     1321 cggcagctgc ccgccctcgc cgggcttggc accctgcgcc accttgatct caatctcctt
     1381 gcagtcattg agatattcag cggtcacacc aaaacggcca gaggcgatct gcttgatggc
     1441 ggaggaggca ttgtcgccat tcggccgcgg ctcggcacgc gccggatcct cgccgccctc
     1501 gcctgagtcg gagcgcgcgc cgatgcggtt catggcaatc gagagcgtct catgagcctc
     1561 ggggctcagc gcaccgagcg aaatgccagg cgacagcagc cgtttacgaa tctcagtgat
     1621 gctctcgacc tcatccaccg aaatgggggt gagcccatcc gtgcggaaat cgagcaggtc
     1681 acgcagcgcc accggcttct gcttgcgcac catctcggaa tatttcttgt acgccttgta
     1741 gctgttattg cccaccgccg tttgcagcag atggatggca ttattgtcga aggcatgggt
     1801 ctcgccattg cggcgcaggc ggtactgtcc gcccacctcc agcggcacga cattgccgct
     1861 ccaggcggag ccgtgcagct ccagcacctc atgcgcgatg ccgggcaggc cgataccgga
     1921 aatgcgcgac ggcatgccgg ggaagaattc gcccaccagc gcgcgggaca ggccgatcgc
     1981 ctcaaaatta tagccgccgc ggtaagagga aatgaccgag atgccaagtt tggacatcac
     2041 cttcaacaac cccttatcga cagccttctt gtagcggccc acagcttcct tgaggctgac
     2101 cttgccgaac agcccgcgcg catggcggtc ggcaatgcat tcctgcgcca gataggcatt
     2161 gaccgtggtg gcgcccacgc cgaccagcac cgcgaaataa tgcacatcaa ggcattcggc
     2221 cgcacgaaca ttcagcgagg taaaggtgcg aagcgactgc cgcaccagat gcgtatgcac
     2281 agcccccgtg gcgaggatca tcggaatcgg cgcgcgctct ggccccatcg cctcgtcggt
     2341 gaggatcaca tgcgtgcagc cggcgcggac gccttcctcg gcctcgcggc ggatgcgctc
     2401 gatggcgcgg cgcagaccgc cctcgccgtt cgccaccttg aaggtgcaat ccaccacgca
     2461 ggcggcagcc cccatggtct tgcgcatggc ctcgaattcc accgtggaaa gcacagggga
     2521 atccagctgc agcaggtcgc actggtcctc gttctcgtcc agcacattgc ccaaattccc
     2581 aagccgggtc ttcaggctca tcacgcgggt ttcgcggagc gaatcaatcg ccggattggt
     2641 cacctggctg aagctctggc ggaaataatg atgcagcccg cgatattttc cggacaaaac
     2701 ggccagcggc gcgtcatcgc ccatcgagcc gatcgcctcc tgcgcggtct ccaccatcgg
     2761 gtgcaggagc agctccatat cctcgagcgt gaaccccacc gcgagctgac ggcggcgcaa
     2821 gccctctgca tccagccgca ccggctccgg cgcatcggtc ttcaccagat ggtcaatcac
     2881 ggtgatgcgc ttcacccagg cggaataatc ctggcgcccc gccagcatgt cctttaattc
     2941 ggtatcgtga tagaatttcg tctcgtcgag atcgacggcg atggtctggc ccggaccgac
     3001 cgcgcccttc tcgatgatat cctcctcatc gaatttcacc atgccggcct cggaaccgac
     3061 gatgagcagc ctggtcttgg tgatggcgta gcgcagcggg cgcagtccgt tgcggtcgag
     3121 cccggcaatc acaaagcgtc catcggtggc ggccacggcg gccgggccgt cccacggctc
     3181 catcaccgca ttgcaatagc tgaacaggtc gcgatgcgcc ttcggcatcg tcgcgtcatt
     3241 ggtgatggaa ggcgggatca tcagcgtctt cgccatcggc gcatcgcgcc cggcgcgcac
     3301 cagcagttcg aacacgttat ccagcgcggc ggtatcagac ccgcccgact gcaccacggg
     3361 cttcacgaat tcgaggaatt catccatccc ctcggccgcc agtcgcgttt catggctctg
     3421 catccagttt atgttgccgg cgactgtgtt gatctcgcca ttatgcgcca gcatgcggaa
     3481 aggctgcgcc agcttccagg tggggaatgt gttggtggaa taacgctggt gatagatggc
     3541 gaagcgcgag acgaagcgct catccagcag atcgggatag aaatccgtca gcgatgccgc
     3601 caggaacatg cccttataga tgatcgagcg
//
LOCUS       DASQCV010000160         1595 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_529721, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000160 DASQCV010000000
VERSION     DASQCV010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529721"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..723
                     /locus_tag="VEQ16_02390"
     CDS             <1..723
                     /locus_tag="VEQ16_02390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62705.1"
                     /translation="CAMTALPRIVCTIGMHGSASTWVFNMAREILTLALGVDAVLPLF
                     ADKMEHLPPEAECAGKTLIIKSHEGSAALEQWLDEHDALRLLSVRDPRDATLSLMLRF
                     GMKLLPAANAIARDGTRLQRLAARGIPVWRYEDGFFRQEAALDTLAARLGCNLAPQLR
                     AALLARYSTDSVRAFAQNIEALPPERLTKVGNFTMDRVTQILSPHIGDAGSGKFRALP
                     ETLQPQLTSFFLPLLTQFGYPP"
     gene            756..1112
                     /locus_tag="VEQ16_02395"
     CDS             756..1112
                     /locus_tag="VEQ16_02395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62706.1"
                     /translation="MGSMVTLRPLLLPAALATLASALAAPPALARNEPKLQPSGIVVH
                     LFGPDTVTHEPVPSSGAPAGAAAPAGTAAASGDASSGAAESSPTWGEIAHEMFVTGDP
                     AQENRATLPKGRASDH"
     gene            complement(1217..>1595)
                     /locus_tag="VEQ16_02400"
     CDS             complement(1217..>1595)
                     /locus_tag="VEQ16_02400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62707.1"
                     /translation="LASCIALLPGLAMAQSDNSAPPPPDGFGGPGMMGGPGDCSGKGW
                     RHGMDQGEFLMKFYAANTTHDGHLTLAQAKAAGLQPVVDHFSDIDAAKRGYVTYYDIA
                     AWRLDDMAKHLQERADQLRAQDK"
BASE COUNT          269 a          556 c          509 g          261 t
ORIGIN      
        1 tgcgccatga ccgccctgcc ccgcatcgtc tgcaccatcg gcatgcatgg cagcgcctcg
       61 acctgggtgt tcaacatggc gcgcgagatc ctcaccctgg cgctgggcgt ggacgcggtg
      121 ctgcctttgt tcgccgacaa aatggagcat ctgccacccg aggcggaatg cgccggcaag
      181 acactcatca tcaagtcgca tgagggcagc gcggcgctgg agcaatggct ggatgagcat
      241 gacgcgctgc ggctgctcag cgtgcgcgac ccgcgcgacg ccactttgtc acttatgctg
      301 cgcttcggca tgaagctgct tcccgccgcc aacgccattg cccgcgacgg gaccaggttg
      361 cagcgcctgg ccgcgcgcgg cattccggtc tggcgctacg aggatgggtt tttccgccag
      421 gaagcggcgt tggacacgct ggcggcgcgg ctgggctgca atctcgcccc gcagctgcgc
      481 gcggcacttc tggcgcgcta tagcacagac tcggtacgcg ccttcgcgca gaacatagag
      541 gcgctgccgc cggagcgcct gaccaaggtg ggcaatttca ccatggaccg ggtgacgcag
      601 atcctcagcc cccatatcgg cgatgccggc agcggtaaat tccgcgctct gccggaaaca
      661 ttgcagccac agctcaccag tttcttcctg ccgttgctaa cacaattcgg ctatccgccc
      721 tgacgccact tgctgccgcc gagcggcagc gcgatatggg gagcatggtt acgctccgcc
      781 ccctcctgct tcccgccgcc ctggccacgc tggctagcgc cctcgccgcc cctcccgccc
      841 tggcgcggaa tgagccgaag ctacagcctt ccggcatcgt ggtgcatctg ttcgggccgg
      901 acaccgtgac ccacgaaccc gtgccatcgt ccggcgctcc ggctggcgca gcggcacccg
      961 cgggaaccgc agccgcctcg ggcgacgcat catccggcgc cgctgaaagc agcccgacct
     1021 ggggcgaaat cgcgcatgaa atgtttgtca ccggcgaccc ggcgcaggaa aaccgggcca
     1081 ccttgcccaa aggccgcgcc agcgaccatt aaaagcggag ttcccgcgcc gcattgaaag
     1141 accggcacgg aacaagctgg agaccgccgg accggcccga ggcgggtccg acgagcccgt
     1201 gtttatatgg ccttgcttac ttgtcctgcg cgcgcaactg gtcggcgcgc tcctgcagat
     1261 gcttggccat atcgtcgaga cgccaggcgg cgatgtcgta ataggtgaca tagccgcgct
     1321 tggcggcgtc gatgtcactg aaatgatcaa ccaccggctg cagcccggca gccttggcct
     1381 gggccagggt gagatgcccg tcatgggtgg tgttggcggc gtagaatttc attaggaact
     1441 cgccctgatc catgccgtgg cgccagccct tgccgctaca gtccccggga ccgcccatca
     1501 tgccgggacc gccaaaccca tcgggcggcg gcggcgcgga attatcgctc tgggccatgg
     1561 ccaggcccgg cagcagggcg atgcaggacg caagc
//
LOCUS       DASQCV010000161         4012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2021445, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000161 DASQCV010000000
VERSION     DASQCV010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4012
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2021445"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1129)
                     /locus_tag="VEQ16_02405"
     CDS             complement(<1..1129)
                     /locus_tag="VEQ16_02405"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYP62708.1"
                     /translation="MKIVAKTANEAGESKQSRVARLLAQDEQLRAAAPSADVVAAKMQ
                     PGLRIAEVVKIVMEGYADRPALGIRARELVTDPATGRNVTRLLQHFDMVTYKELWRRA
                     RAQAADWHQDGLKPGDFVCVLGFASPDYATLLISNIHLGAVIVPLQASAPAAQHAAIM
                     AETSPRILASGIDYLETAVEAILAGTHPARLVIFDYDKRDDAQREKFEVAAASLAAAK
                     CPTRLEAIDDVIAHGATLPVAPLFVAPPGEDPLAWLFYTSGTTGTPKGAIFTQSLVIG
                     SWQSDTKIPTVTLSFMPMSHLVGNGYMILALANGGTSYCAPKSDLSTLFEDLPLARPT
                     MASIVPRVCEMFFHHFLREVDKRVAAGGVQEDIEAEVKREMR"
     gene            complement(1302..1868)
                     /locus_tag="VEQ16_02410"
     CDS             complement(1302..1868)
                     /locus_tag="VEQ16_02410"
                     /inference="COORDINATES: protein motif:HMM:NF037150.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HYP62709.1"
                     /translation="MPTHAKPRTRNAAETKARIILAAQALFARKGYAQCSVKEIADAA
                     GVAASLVIKHFGSKADLFGAALVAALQQSPLTGVPKSEFATKLTDTLLGKGAKVLTPA
                     LTMAALEDEEARQIAAKVTRDYVLKPSAEWLGAPDADARAAYIMMVSFGFAVFLRLFD
                     QDVPGSIKEPTSRWIAALFEDVINRQGV"
     gene            1958..3025
                     /locus_tag="VEQ16_02415"
     CDS             1958..3025
                     /locus_tag="VEQ16_02415"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HYP62710.1"
                     /translation="MSFQLDHYRLLGRSGLRVSPLSLGTMTFGVDPAGWGSSEEDGRR
                     MIDLYMDRGGNFIDTANFYAQGESEKMLGRLVQGRRERLVISTKYSLTMRKGDANATG
                     NSRKNMVRAVEDSLKRLGTDYIDLFYLHVWDFRTPIEEILRGFDDLTRQGKIIYAGIS
                     DTPAWQVARMQMAADLRGWTPFVAMQMLYNLVDRTAERDLIPMAQEVGIGVIPWSPLA
                     GGVLSGKYSRADLAAPKTSLGSMTDRKGINAATGRLSERGLDIADAVVEIAKELNVKP
                     ASVALAWTLLNPAIASTLIGARTFAQFESNLEALDVKFSNDQIARLDAASRPELGFPH
                     DMLRGPSYEFMFGNIEVQRRG"
     gene            complement(3036..3779)
                     /locus_tag="VEQ16_02420"
     CDS             complement(3036..3779)
                     /locus_tag="VEQ16_02420"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HYP62711.1"
                     /translation="MTQNEPDPALLASMRLCYQPILRLVDEQMDHVEVLYRSAGADGA
                     LHGPEAIVDAMTCTGQALPLTLAIMRRALTEYRAYHFAASGLTLAFNLPLDAMLHPAL
                     GEEIATLCNATGVAPGHIRFELTETSPVEDFAAAASGIRRLHEAGHHVALDDVWPDMP
                     YLAALMALPVSAIKFSNTLVADPASLPFIRTTAARAAAYRMDSIAEGIETPAQLTAMR
                     EAGVTHGQGYFFSRPLPACALGSVLYQAA"
BASE COUNT          801 a         1273 c         1225 g          713 t
ORIGIN      
        1 cgcgcatctc gcgcttcacc tcggcctcga tgtcttcctg cacgccgccc gctgcgacgc
       61 gcttatccac ctcgcgcagg aaatggtgga agaacatttc gcagacgcgc ggcacgatgg
      121 aggccatggt cgggcgcgcc agcggcagat cctcgaacaa ggtcgaaaga tcactcttcg
      181 gtgcgcaata agacgtgccg ccattggcca gcgccaggat catatagccg ttgcctacga
      241 gatggctcat cggcatgaaa ctgagcgtaa ccgtggggat tttcgtatcc gactgccagg
      301 agccgatgac gaggctctgg gtaaaaatcg cacccttcgg cgtgcccgtg gtaccggagg
      361 tatagaacag ccaggccagc gggtcctcgc cgggtggggc cacaaacaat ggcgctaccg
      421 gcagcgtggc gccatgggcg atgacatcgt caatcgcctc aagccgcgtc gggcacttgg
      481 ccgccgccaa ggacgcagcg gccacctcga atttttcgcg ctgcgcatcg tcgcgcttat
      541 cgtaatcgaa tatgaccagc cgcgccggat gcgtcccggc gaggatcgcc tccacagcgg
      601 tctcaagata atcgatgccg ctcgccagaa tgcgcgggct tgtctcggcc atgatggcgg
      661 catgctgggc ggccggggcg ctggcctgca gcggcacgat gacggcgccg agatggatgt
      721 tggagatcag tagcgtggcg taatcagggc tggcaaagcc cagcacgcac acgaaatcac
      781 ccggtttcag cccgtcctgg tgccagtctg cggcctgggc acgggcgcgg cgccacagct
      841 ccttgtaggt caccatgtcg aagtgctgca gcaggcgcgt cacattgcgg ccggtcgcgg
      901 gatccgtcac cagctcgcgc gcgcgaatgc cgagggcagg gcggtcggca tagccttcca
      961 tgacgatctt caccacttcg gcaatacgca ggccaggctg catcttggcc gccaccacat
     1021 ccgccgacgg tgcggcggcg cgcagctgct catcctgcgc cagcaaccgc gccacccggc
     1081 tctgcttgct ttcccccgcc tcattcgcgg ttttggccac aattttcatg gaccgccttc
     1141 tcccctggtt ttggtgaata gttgttcact aaaaccaggg gccggtccgc tgtcaagcga
     1201 atgacgccgc cggtcgggtc agacgtgctg ccaggcaggc cgcgtcactt aaaaaaaaat
     1261 ccagaaaata tgcacaaaat ttcaaaaccc cagaagccac atcaaacccc ttggcggttg
     1321 atcacatcct cgaacaaggc cgcaatccag cgcgatgtcg gctccttgat gctgcccggc
     1381 acatcctggt caaacagccg caaaaacacg gcaaaaccaa agcttaccat catgatgtaa
     1441 gcagcgcgcg catcggcatc cggcgcgccg agccattcgg cggatggctt cagcacgtaa
     1501 tcccgcgtga ccttggcggc aatctgccgc gcctcctcat cctccaaagc cgccatggtg
     1561 agcgccggag tcagcacttt tgcccccttg ccgagcagcg tgtccgtcag cttggtggcg
     1621 aattcgcttt tcggcacgcc agtcagcggc gattgctgca aggccgcgac cagggcggcg
     1681 ccgaacagat ccgccttgct gccaaaatgc ttgatgacaa gcgaggccgc cacgccggcc
     1741 gcatcggcaa tctccttcac gctgcattgc gcatagccct tgcgcgcgaa caaagcctgc
     1801 gcggcgagga tgatgcgcgc cttcgtttcg gcggcgttgc gtgtgcgggg tttggcgtgg
     1861 gtgggcatgc aaaggcgcta gcacaggcga ttgacaatcc aaaacgcggg atcataggtg
     1921 aatgtctatt cacgcatatc gccgggggta gaatcgcatg tctttccagc tcgaccatta
     1981 caggctgctc ggccgctccg gcctgcgcgt ttcgccgctc tcgctcggca ccatgacctt
     2041 cggtgtcgac cccgcaggct ggggcagcag cgaagaggat gggcgccgca tgatcgatct
     2101 ctacatggat cgcggcggca atttcatcga caccgccaat ttctacgccc agggcgagtc
     2161 cgagaaaatg ctcggccggc tggtgcaggg acggcgcgag cgtctggtca tctccaccaa
     2221 atattcgctc accatgcgca agggcgacgc caacgccacc ggcaacagcc gcaaaaacat
     2281 ggtccgcgcc gtcgaggaca gcctgaagcg tctcggcacg gattatatcg acctgttcta
     2341 tctccatgtc tgggatttcc gcacacccat cgaggagatt ctgcgcggct tcgacgacct
     2401 cacacgccag ggcaagatca tctatgccgg catttccgac acgcccgcct ggcaggtggc
     2461 gcgcatgcag atggcggccg atttgcgcgg ctggacgccg ttcgtggcga tgcagatgct
     2521 ctacaacctc gtcgaccgca ccgccgagcg tgacctcatc cccatggcgc aagaggtcgg
     2581 catcggtgtc atcccctggt cacccctggc aggcggcgtg ctgagcggca aatatagccg
     2641 cgccgatctc gccgcgccca agacgagcct gggcagcatg acagaccgca agggcatcaa
     2701 tgccgccacc gggcgcctct cggaacgcgg gctcgatatt gctgacgcag tggtggaaat
     2761 cgccaaggag ttgaacgtca agccggcctc ggtggcgctg gcctggacgc tgctcaaccc
     2821 ggccattgcc tcaaccctca tcggcgcccg caccttcgcg caattcgaga gcaatctgga
     2881 agcgctcgac gtcaaattca gcaatgacca gatcgcccgg ctggatgcgg cgagccgccc
     2941 cgagctcggc ttcccgcacg acatgctgcg cgggccgtcc tatgagttca tgtttggcaa
     3001 tatcgaggta cagcggcgcg gctgaacgcc gtgcctcacg ccgcctgata cagcacgctg
     3061 cccagggcgc aggcgggtaa ggggcgggag aaaaaataac cctggccatg cgtgacgccg
     3121 gcctcacgca tggcggtgag ctgggccggg gtctcaatgc cttcggcgat gctgtccatc
     3181 cggtacgcgg cggcacgtgc ggctgtagtg cggatgaaag gcagggaagc agggtcggcc
     3241 acaagcgtat tgctgaattt gattgcgctc accggcaggg ccatcaacgc ggcaagataa
     3301 ggcatgtccg gccagacatc gtccagcgcg acatgatgcc ccgcctcatg cagccgcctg
     3361 ataccggaag cggccgcggc gaaatcctcc accgggctgg tctctgtcag ctcgaagcgt
     3421 atatggccag gagcgacgcc cgtggcattg cagagcgtgg caatctcctc gcccagcgct
     3481 gggtgcagca tggcatccag cggcaggttg aaggccaagg tgaggcccga ggcggcaaaa
     3541 tggtaggcac gatattcggt cagtgcccgg cgcatgatgg cgagtgtcag cggcaaagcc
     3601 tggccggtgc aggtcatggc gtcgacaatt gcctccggcc cgtgcagcgc gccgtccgcg
     3661 ccggcgctgc ggtacagcac ctcgacatgg tccatctgtt cgtccaccag cctcagaatg
     3721 ggctggtaac agagacgcat agaagccaga agcgccggat caggctcgtt ttgagtcatg
     3781 aattttcgcc gcgctgttat gggatactcc cgtgacaggc gaaatattag cagagtgtta
     3841 acggtctggc gatcaaaaaa tcaccaggcg tccaaaaaat atttcttact ttcgcgcacg
     3901 agagagtttt ataccaccat aggtagcata aaataattcc acagaaaatt tattgtttta
     3961 caggcgcggc gccacggcgc agccgcttct cgccgaggaa cagcagaatg gg
//
LOCUS       DASQCV010000162         1826 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1524814, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000162 DASQCV010000000
VERSION     DASQCV010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1826
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1524814"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..231
                     /locus_tag="VEQ16_02425"
     CDS             <1..231
                     /locus_tag="VEQ16_02425"
                     /inference="COORDINATES: protein motif:HMM:NF016992.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HYP62712.1"
                     /translation="QVLAILTDALPDDTWLSDLTLKNGDLTFDGQSANAAQLIGLLSA
                     VPGLRDPSFTAPVTRTADGKADLFSLHATVSE"
     gene            228..806
                     /gene="gspM"
                     /locus_tag="VEQ16_02430"
     CDS             228..806
                     /gene="gspM"
                     /locus_tag="VEQ16_02430"
                     /inference="COORDINATES: protein motif:HMM:NF040576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspM"
                     /protein_id="HYP62713.1"
                     /translation="MMHLPSALPDGRHGQALAVAITLLGVLLLWEVTAAPLLDWYEAR
                     QDELTQQRQLAAHMQALGREIPTLRNAVSAAGLQASDDQVLLSGNSDVIAGANLQTVL
                     QGLAAQAGTSLNSAALQPAEQAGGLRRISMQVSVTASWPVLIALLQAIGTAQPRMIVN
                     TLNITMSGTPNTDQLQQVLASFTVTGFRAASP"
     gene            803..1411
                     /locus_tag="VEQ16_02435"
     CDS             803..1411
                     /locus_tag="VEQ16_02435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62714.1"
                     /translation="MKRGSALAQIHRALPTYAPYVLPGLAGLLVLILAVEWIGPGTGD
                     AGSVPPPALPSATAQTANVTVSQWGSDIIARPLFSPSRRSDASAGDDDGGLPRLSAII
                     VTGHAGTAIFAADGQKPQSIGVGGEIDGDKLLRVDPDEVELLGPSGPLILRPQFAPPG
                     AGAAADASTAPAPGPAPAFNPMTPLPPATPTSNPTLYIEQNF"
     gene            1411..>1826
                     /locus_tag="VEQ16_02440"
     CDS             1411..>1826
                     /locus_tag="VEQ16_02440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspD"
                     /protein_id="HYP62715.1"
                     /translation="MPTKRHLAVLSLVLLGSCTTTPPGGQMSASPAMVTPSPLAPAPL
                     PATPRLSGPVAGPSLPPLPSASYAGAAPPPGAPVNLTSTSNGDISFNFANTDLRTVVD
                     QILGGILHVNYTIDPGVSGTATLRTVTPLTIDQVIPT"
BASE COUNT          301 a          654 c          539 g          332 t
ORIGIN      
        1 caggtgctcg ccatcctcac cgacgcgttg cccgacgata cctggctgtc cgatctcacc
       61 ttgaaaaatg gcgacctgac cttcgacggc cagtcggcca atgccgcgca gctcatcggc
      121 ctgctctccg ccgtgccggg cttgcgcgac ccaagtttta ccgcgccggt gacgcgtacc
      181 gccgatggca aggcggatct gttctccctg cacgccacgg tttcggaatg atgcatctgc
      241 cctccgccct gcccgatgga cgacacggcc aggcactggc tgtggccatc acgctcttgg
      301 gcgttttgct cctgtgggag gttaccgcgg cgccattgct tgactggtat gaggcgcgtc
      361 aggatgagct gacgcagcaa cgccagctag ccgcgcatat gcaggcattg ggccgtgaga
      421 ttcccaccct gcgcaatgcc gtcagcgccg ccgggctgca agcctctgat gaccaggtgc
      481 tgctgagcgg caattcggat gtgattgccg gggccaatct gcagactgtc ttgcaggggc
      541 tggcggcgca ggccggtacg agcctgaaca gcgccgcgct gcagcccgcc gaacaggctg
      601 gcggcttaag gcgcatctcc atgcaggtga gcgtgacagc aagttggccg gtactcatcg
      661 cgctgctgca ggccattggc acggcacagc cgcgcatgat cgtgaatacg ctcaacatca
      721 ccatgtccgg cacgccgaat acggatcagc tgcagcaagt gctggcaagt ttcactgtca
      781 ccggcttccg cgcggccagt ccatgaaacg cggctcggcc ctggcgcaga tccatcgcgc
      841 ccttccaacc tatgcgccct atgtcctgcc cggcctcgcg gggctgctgg tcctgattct
      901 agctgtggaa tggatcggcc ccggcacggg tgatgccggc agcgtgccgc ctcccgcttt
      961 gccctccgcc accgcgcaaa cggcaaatgt taccgtgtcg caatggggta gcgatattat
     1021 cgcccggccg ctcttcagcc ccagccggcg ttccgatgcc tcggctggtg acgatgatgg
     1081 cgggctgccg cgcctttccg ccatcatcgt cacgggccat gccggcactg ccatctttgc
     1141 tgccgatggg cagaagccac aatctatcgg cgtgggcggt gagattgacg gcgacaagct
     1201 gctgcgcgtg gacccggacg aggtggaatt gctcggcccg tccggcccgc tgatcctgcg
     1261 cccgcaattc gcaccgcccg gcgccggcgc ggcggccgat gcatctactg ccccagcccc
     1321 tggcccggca ccggctttca atccgatgac gccactcccg ccagcgacgc caacctccaa
     1381 ccctaccctc tatattgaac aaaatttctg atgcccacga aacgacacct tgccgttctc
     1441 agcctggtcc tgctcggctc ctgcaccacc acgccgcccg gcgggcagat gtccgcctcc
     1501 cccgcgatgg tcacaccctc gcccctggcg cccgctcctt tgccggccac gccgcgttta
     1561 agcggccccg tggccggacc tagcctgccg cccttgccaa gcgcgagcta cgctggcgcc
     1621 gcgccaccgc caggtgcgcc tgtgaatctg acctcaacca gcaatggcga tatcagcttc
     1681 aatttcgcca ataccgactt acgcacggtg gtcgaccaga ttctcggcgg catcctgcat
     1741 gtgaattaca caatcgaccc cggcgtgagc ggcacggcga cgctgcgtac ggtgacacca
     1801 ctgacgatcg accaggtgat tccgac
//
LOCUS       DASQCV010000163         2544 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_530177, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000163 DASQCV010000000
VERSION     DASQCV010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2544
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530177"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..608
                     /locus_tag="VEQ16_02445"
     CDS             <1..608
                     /locus_tag="VEQ16_02445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP62716.1"
                     /translation="PPAPDLLSQLMAAKPATPEHTITEDTPSPEEMAERRARLDRILR
                     AILADPEAGFRAIGVLYQDFLVRCRIEGLGAGAPDLAAFRRMLTRARAGITAEMAEEA
                     AWQDVTARGAILPEDMQGIFMMIARAAKDVLPCPGDPAIARAYGTRSLGRARRVLTYM
                     EEQGLIVCQQDGAGRRTVTLVELAWATAPGDPNAEDELAPL"
     gene            complement(613..1458)
                     /locus_tag="VEQ16_02450"
     CDS             complement(613..1458)
                     /locus_tag="VEQ16_02450"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP62717.1"
                     /translation="MEAQNYFHGGVAVVTGAGSGLGRAMVLRFAAAGMGVVALDIDGP
                     RVEETAQLVRDAGGAAMPLRVDVADQAAMVVAAEAAAQKFGGVNVLCANVGVQQFGAI
                     DKLTEQDWRWVLDVNVLGVVHTVNAFLPLLRAASGPRHIAVTASSASLTPGVRMGAYT
                     TSKYAVLGYTETLRMELAEEGIGVSAVLPAGMITRHLESSALARPAELGKSELRREDI
                     DVMMASRKMDAANHVATAEHATRHLLEDLANNERFIITHGEYRESLVATFDAILRAHD
                     RAQEA"
     gene            1966..2220
                     /locus_tag="VEQ16_02455"
     CDS             1966..2220
                     /locus_tag="VEQ16_02455"
                     /inference="COORDINATES: protein motif:HMM:NF012759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HYP62718.1"
                     /translation="MTDEDILERLTDICRYIFDYDGDTLTQDMTSDDIEAWDSMSNIT
                     LAIEIEKRFGIKIKMAELEKLKSVRSLVALIKSSLPISTS"
     gene            2237..>2544
                     /locus_tag="VEQ16_02460"
     CDS             2237..>2544
                     /locus_tag="VEQ16_02460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HYP62719.1"
                     /translation="MLFNSYSFVFTFLPLALIGFYALGHFGRASGAVWLVLTSLVFYS
                     FWNPAYVLLLLGSIAFNFAISLRLDTNRDRPARQRAWLAFGITADIAVLVYYKYLGAL
                     "
BASE COUNT          485 a          937 c          681 g          441 t
ORIGIN      
        1 cgcccccagc cccggacctg ctgagccagc tcatggcggc caaacccgcg accccggaac
       61 acacaatcac cgaagacacc ccctcgcccg aggaaatggc cgagcgccgc gcccggctcg
      121 accgcatcct ccgcgccatc ctcgccgacc ccgaagccgg cttccgcgcc atcggcgtgc
      181 tataccagga tttcctcgtc cgctgccgca tcgagggcct cggcgccggg gccccggacc
      241 tcgccgcctt ccgccgcatg ctcacccgcg cccgtgccgg catcaccgcc gaaatggcgg
      301 aagaagccgc ctggcaggac gtcaccgcgc gcggcgccat cctgcccgag gacatgcagg
      361 gcatcttcat gatgatcgcc cgcgccgcca aggacgtcct gccctgcccc ggcgaccccg
      421 ccatcgcccg cgcctatggc acgcgctccc tcggccgcgc ccgccgcgtg ctcacctaca
      481 tggaagagca gggcctcatc gtctgccagc aggacggcgc cggccgccgc accgtcaccc
      541 tcgtcgaact cgcctgggcc acagcaccag gcgacccaaa cgcggaagat gaattagccc
      601 cactctgaaa aatcaagctt cctgagcacg gtcatgggcg cggaggatgg cgtcgaacgt
      661 cgccaccagc gactcccggt actcgccatg ggtaatgata aagcgctcat tgttggcgag
      721 atcttccagc agatgccgcg tggcatgctc agccgtcgcc acatggttgg cggcatccat
      781 cttgcggctg gccatcatca catcgatatc ctcgcgccgc agctccgact tgcccaactc
      841 cgccgggcgc gccagcgcgc tgctttccag atgccgcgtg atcatccccg ccggcagcac
      901 agccgacacg ccaatccctt cctccgccag ctccatgcgc agcgtctctg tatagcccag
      961 caccgcatat ttgctggtgg tataggcgcc catgcgcaca cccggcgtga gcgaggccga
     1021 agaagcggta accgcgatat ggcgcggccc ggatgcggca cgcagcagcg gcaggaaggc
     1081 atttaccgta tgcaccaccc ccagcacatt cacatccagc acccagcgcc aatcctgctc
     1141 ggtcagcttg tcgatggcgc caaactgctg caccccgaca ttggcgcaaa gcacgttcac
     1201 gcccccgaat ttctgcgccg ccgcctcagc cgccaccacc atcgcggcct ggtcagccac
     1261 atccacgcgc agcggcattg ccgcgccgcc cgcatcgcgc accagctgcg ccgtttcctc
     1321 aacccgcggc ccgtcaatat ccagcgccac gacgcccatg ccggcagcgg cgaaacgtag
     1381 caccatggcc cggcccagac ctgagccggc ccccgtcacg accgccacgc caccgtggaa
     1441 ataattctgc gcttccatcc cccgcccttt ctcatattgc cagccgtacc gccgggcttt
     1501 gcctcatcct tggcatggcg gcgcgccagc cggcaaccgc gccaggggca gcatcgcagg
     1561 ctcgatcctg gcagataaaa gacgccgcgc cgtctaccct cgccgaacac atgacagcgc
     1621 gaatattcga accgttttag ccggcatcat aagtggcgtc tgggcggcgg cggacacgac
     1681 cagccattcg tgaatggtca cgcctcgctg cccggtcatc tgtacaatcc aggaccggca
     1741 aacccagctg cgtttcctgg caaatctcac gggggccgcg caattgccca tttgtacatc
     1801 atacacaagg gagcgaaatc gccgcgaatc cggcgcgctc atccgaattg tgatgttctc
     1861 agaacaagag cagggcgtta agccatcatg aaacctgatt ttatccatgc acgcggcggc
     1921 agggatgatc ggcacacagg aatcaacaca gcacagaggc agtccatgac cgacgaagac
     1981 atcctcgagc gcctcacgga tatctgccgt tatatcttcg actatgatgg cgataccctg
     2041 acccaggata tgacgtccga cgatatcgag gcttgggatt ccatgtcgaa catcacgctc
     2101 gccatcgaga tcgagaagcg cttcggcatc aagatcaaaa tggcggagct ggagaagctg
     2161 aagagcgtcc ggagcctggt cgcgcttatc aaatcaagcc ttccgatttc cacgtcctga
     2221 gataggtgag gaaccgatgc tgttcaattc atacagtttc gttttcacct tcctcccgct
     2281 ggcgctcatc ggcttttatg cccttggcca tttcggccgc gcctccggcg cggtttggct
     2341 cgtgctcacc tccctggttt tctacagctt ctggaatcct gcctacgtcc tgctgctgct
     2401 cggctccatc gccttcaatt ttgccatcag tctgcggctc gacacaaaca gggaccgtcc
     2461 cgcccgccag cgcgcctggc tcgccttcgg catcaccgca gatattgctg ttctcgtcta
     2521 ttacaaatat ctgggcgcgc tgat
//
LOCUS       DASQCV010000164         1924 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_530596, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000164 DASQCV010000000
VERSION     DASQCV010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1924
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530596"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1924)
                     /locus_tag="VEQ16_02465"
     CDS             complement(<1..>1924)
                     /locus_tag="VEQ16_02465"
                     /inference="COORDINATES: protein motif:HMM:NF015377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine peptidase family C39 domain-containing
                     protein"
                     /protein_id="HYP62720.1"
                     /translation="QTSAMDCGPAALKCLLEGWGIPVSYGRLREACQTDADGTSIDTM
                     EDIAVQLGLEAEQIMLPPDYVLLEESEALPAITVVVLASGITHFVLAWRRHGPVVQVM
                     DPGVGRRWPTRQQFVSSLHVHTQIAPLSTWREWATSEKFLRPLRRKLTDLGCSGRQAV
                     RLVEGAATEGGWRPLAALEASTRTVEAVIHSRGLRRGGEAARVVERLFEGALAVTDGQ
                     PRLIPSHFWSVREAPAGADGEEQIYFRGAVLVHASGRKQQKTAKSSCAEVVPKEAPTA
                     PLSPELVAALEEPQTRPGFELVRLLAADGVLTPVSIVTALLLATAGVILEALLLRGLL
                     DLGHEIGLPLGRMAVMGVLLVFVAALLLLELPIAAGLLAMGRRLEVRLRIAFLKKIPR
                     LGDRYFHSRLNSDMASRSHQIHRIRLLPDLGGRLLRSTFELLLTAAGVIWLDPGAAPL
                     AIAAAVLAVGLPMAVQPLLAERDMRLENHAGALSRHYLDALLGLVPLRTHGAERALRR
                     EHESLLGEWTRAAFSLERLVVGVEGAQFFLGFGLAAWILLDHVARVGELGSVLLLVYW
                     ALNLPAIGQDIAQVAWQYPAHRNRTLRLLEPLGAPDEVEVRRPQAAPAQIRKEKVVAN
                     PGPPAIAFDKVSVRIAG"
BASE COUNT          385 a          641 c          589 g          309 t
ORIGIN      
        1 ggcctgcaat ccgaacgctc accttgtcaa acgcaatggc tggggggccg gggttcgcga
       61 caaccttttc tttcctgatc tgggcgggcg ccgcctgcgg ccgcctaact tcaacttcat
      121 ccggcgcacc gagcggctcc aacaagcgca gagtccggtt gcggtgggcg ggatattgcc
      181 atgcgacttg cgcaatgtcc tgaccgatgg cgggcagatt aagcgcccag tacaccagca
      241 gcagcacgct gcccagctct cccacgcgcg cgacgtggtc gagcaaaatc caggctgcca
      301 agccgaatcc aagaaagaac tgcgcgcctt ccacccctac gaccagacgc tccagcgaga
      361 atgcggcccg cgtccactcg ccgagcaagc tttcatgttc gcggcgcagc gcgcgctccg
      421 ccccatgcgt gcgcaagggc acgagcccaa gcaaggcgtc caggtaatga cggctaaggg
      481 cgcctgcatg gttctctagg cgcatgtcgc gctcggccag cagcggctgc acagccatcg
      541 gcaagccgac agcgagcact gccgcggcga tggcaagcgg agccgcgccc gggtcaagcc
      601 aaatcacgcc ggccgcggtc aacagcagct cgaaagtcga acgcagcagg cgtccgccaa
      661 gatccggaag caggcgaatg cggtggatct ggtggctacg cgatgccatg tcggagttga
      721 gccggctatg aaagtaacga tcgccgaggc ggggaatttt cttcaaaaac gctattcgga
      781 ggcgcacttc caggcgtcgc cccatggcca gcagtccggc ggcgatgggt aattccagca
      841 gcagcaatgc tgccacaaat accaaaagca cgcccataac tgccattcgc cccaagggca
      901 aaccgatctc atgccccaga tcgagcagcc cgcggagaag cagcgcctcg agaattacgc
      961 cagctgtggc cagcaacaag gcggtaacga tcgagacggg agtcaaaacg ccatcggccg
     1021 ccagcagccg aactagttcg aatcctggcc gggtctgcgg ctcctctaag gcggcgacca
     1081 gttcaggaga aagcggggcg gtgggcgctt ctttcggcac gacttcagcg caactggatt
     1141 ttgctgtttt ctgctgtttg cggccgctgg catgcaccag tacggcaccg cgaaaataaa
     1201 tctgctcctc tccgtccgca ccagccggcg cttcgcgcac ggaccagaag tgcgatggga
     1261 ttaaccgcgg ttggccgtca gttacagcga gcgctccttc gaacaggcgt tccacaaccc
     1321 gcgcggcttc accgccacgc ctgaggccgc gcgaatgtat gaccgcttcg accgtgcgtg
     1381 tggacgcttc cagcgccgca agggggcgcc atcctccttc ggtagcggcg ccttccacta
     1441 agcgcactgc ctggcgccca gaacatccca agtcagtaag cttgcggcga agtggccgca
     1501 ggaatttctc cgaggtcgcc cactctcgcc aagtgctgag cggggctatc tgggtgtgga
     1561 cgtggagcga ggaaacaaac tgctggcgcg tcggccaacg tcgtcccacg cccgggtcca
     1621 tgacttgcac cacggggccg tgtcgccgcc aagccagcac gaaatgggtg atcccgctgg
     1681 ccagcaccac cacggtaatt gcgggcaggg cctcggactc ctcgagcagg acgtaatcgg
     1741 gaggcagcat gatctgctct gcctccagcc cgagctgcac cgcgatgtct tccatcgtat
     1801 cgatagaagt gccgtccgcg tcggtctggc aggcctcgcg cagccggcca tagctcacag
     1861 gaattcccca gccttccagc aggcacttta gcgccgccgg cccgcagtcc atggccgagg
     1921 tctg
//
LOCUS       DASQCV010000165         5651 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1525528, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000165 DASQCV010000000
VERSION     DASQCV010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5651
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1525528"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            62..919
                     /locus_tag="VEQ16_02470"
     CDS             62..919
                     /locus_tag="VEQ16_02470"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HYP62721.1"
                     /translation="MSAATKPPVAALQHEQIKPKIGTRILNSKEELLAGGHAAEIREL
                     LEQRGVLVFPEINFTSQEQIAFTKTLGTFAPEGYGNENDVTKITLDVKENPQSAEYLK
                     GSLYWHIDGTRNDVPILASLLTCKVPASWGGNTSVCNTYAAYEDLPEEKKKEIENLRV
                     LHAPWASLFYYEPEPSLAKVQGMQRIGEKELPLVWTHKSGRKSLVLGCTSHHVVGVGY
                     AESAQIIHGLREWVTSEQFTYSHEWKVGDMIIWDNTGTMHRAEAYDPNCGRMMIRTKL
                     EGEEPFDAV"
     gene            complement(998..2392)
                     /gene="gltX"
                     /locus_tag="VEQ16_02475"
     CDS             complement(998..2392)
                     /gene="gltX"
                     /locus_tag="VEQ16_02475"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HYP62722.1"
                     /translation="MTVRTRFAPSPTGLLHIGGARTALFNYLFARHHGGEFLLRIEDT
                     DKARSTQEAVQVILDGLDWLGLKADQAPVYQSQREARHVEVALQLLAEGKAYKCYCTA
                     EELQAMREQAIAEKRPPRYDGRWRDRDPSEAPESMKPAIRLKAPREGEVVLQDLVQGE
                     VRVKNAEMDDMIILRSDGTPTYLHAVVVDDHDMDITHVIRGDDHLTNTFRQIQIYDAM
                     GWEKPQFAHIPLIHGADGAKLSKRHGAVSILEFREQGFLPEALCNYLLRLGWGHGDAE
                     FLGREEQIELFTLEGVGRAASRMDYAKLTHLNGMWLRQADDDRLVEDVVQRLVAADLT
                     VSTAAMKRIHQLMPGLKERAKTLEELTASAAFLAREVPLAFEPKAAALLNEDTKPMLC
                     RLLPVLEATDFSAPALDAALRSFAEAEGRKLGQVAQPVRAALTGSTMSPGIDVTLAAL
                     GKDEVAVRLKAAAA"
     gene            2468..4462
                     /locus_tag="VEQ16_02480"
     CDS             2468..4462
                     /locus_tag="VEQ16_02480"
                     /inference="COORDINATES: protein motif:HMM:NF015714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HYP62723.1"
                     /translation="MGEIFARWVEAEQGRFFLLLPIATGAAILVYFTLPAEPPLWLGF
                     SLLTLALAALAAGWRHPYWRFVAILLLAASLGFARAQWRTASEPPLLIIPTGPVAVSG
                     TISRIEHLPGASRITLIQAQLDAGPALRRAIRLKLRADDMLPLQAGEGVRSYALLFGP
                     ERPAWPGGWDMGRDYFFSGLGATGFALTHLTLTRTAPDNPFTAGLQNLRNNIAATILA
                     ILPPDTGGIAVTLLTGDEQSVPASIRQNFIAAGLAHILAVAGLHVGIIMGLVFFTSRW
                     LLTRHERTALHLPAKSIAAILALLGGFGYALLTGAHLPILRALTMASLATLGVAMGRR
                     AFSLRGLALAALALLLASPELVLSASFQMSFSAVAALIAGYAAVREMNFRLPLTHGRA
                     SAALRHVAGLAYTSLLAGGASMPFAAYQFQQIQPYWIPANLIAVPLTGFWILPWGLIA
                     LALMPMHLAALALIPMGWGIKLIIILTGIIAAWPDAMLRIPPMPDASILLIAAGLASL
                     CIWRSVGRFAGLPMMALGLAVAFATRPPDVLVSADARLIALRNGAAVFVVKQPRASSF
                     VLEQWQSIWGTTSLTPAQCTAQSCQVGLAWFTSLPACAPARLIAAPIVMPPCPVPTID
                     RMATYRNGAIAAWFTAQGVFIRTDRAAQGARPWVIPYPQP"
     gene            4500..>5651
                     /locus_tag="VEQ16_02485"
     CDS             4500..>5651
                     /locus_tag="VEQ16_02485"
                     /inference="COORDINATES: protein motif:HMM:NF014732.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Wzz/FepE/Etk N-terminal domain-containing
                     protein"
                     /protein_id="HYP62724.1"
                     /translation="MSLTLPSLTAPAAPPLADQLLALRRRWRLILACTLAIPAIALTV
                     LLLSPASYTATGILLYDPDNQAIPGDNTNIPQDAANEDEITASQAEIVASLPEAAQIA
                     QQLNLAALPEYNPALRPRHVWSWFLPAPKPLTQAALAQRVQRALAVNILPGSRILTVS
                     FTSRDPQRAAAAANLAMQLYLDHQRDESFAELTDAQSWLETHSADEQAQLDATEAALA
                     QARASAGLVQGAQASLTTETVSRLAAALVQAQADMAMNQARLQSAAAGGDAAAANAAI
                     APNLLPLRQRQADLAAQVQSLAAQFGPNYPPLQEARSQLAAISGEINEETGRELDAAK
                     ADLAANKAQIFTLQTALNAAQAQEQAQDEESAPIRALEQRAAAGQDMLRA"
BASE COUNT          967 a         2033 c         1621 g         1030 t
ORIGIN      
        1 cgcctcaatg tcccacagaa taaactgaca tactgtctgc gataataaag gagctgtcca
       61 aatgtccgcc gccaccaagc cccctgttgc cgcgctgcaa catgagcaga tcaagccgaa
      121 aatcggcacg cgcatcctca acagcaagga ggagctgctc gccggcggtc atgccgctga
      181 aatccgcgag ctactggaac agcgcggcgt gctggtcttc ccggagatca atttcacctc
      241 gcaggagcag atcgccttca ccaagacgct cggcaccttc gcgccggaag gctatggcaa
      301 cgagaacgac gtgaccaaga tcacactcga cgtgaaggaa aacccgcaga gcgccgaata
      361 tctgaagggc tcgctctact ggcatattga cggcacgcgc aacgacgtgc ccatcctggc
      421 ctcgctgctc acctgcaagg tgccggcgag ctggggtggc aacaccagcg tgtgcaacac
      481 ctacgccgct tatgaggacc tgccggaaga gaagaagaag gagatcgaga atctccgtgt
      541 cctgcacgcc ccctgggcat cgctcttcta ttacgagccg gagcccagtc tggcgaaagt
      601 gcagggcatg cagcgcatcg gcgagaagga gctgccgctg gtctggacgc ataaatccgg
      661 ccgcaagtcg ctcgtgctgg gctgcacctc acaccatgtg gtgggcgtcg gctatgccga
      721 gagcgcccag atcatccatg gcctgcgcga gtgggtaacc tccgagcagt tcacctactc
      781 ccatgagtgg aaggtgggcg acatgatcat ctgggacaac accggcacga tgcatcgcgc
      841 cgaggcctat gacccgaatt gcggccgcat gatgatccgc accaagctcg aaggcgaaga
      901 gccgttcgac gcggtgtaag cgtcctcgaa acgaaaaacc gggccttttg gcccggtttt
      961 tttttggttt cacctcagcc ttatggagct tgcgccttta agccgcagca gccttcaatc
     1021 gcaccgccac ctcgtccttg ccgagtgccg ccagcgtcac gtcaattcca gggctcatcg
     1081 tgctacccgt cagcgccgcg cgcactggtt gcgccacttg gcccaacttg cgcccctcgg
     1141 cctcggcaaa gctgcgcagc gccgcatcca aagcaggggc ggaaaaatcc gtcgcctcca
     1201 gcaccggcaa cagccggcag agcatgggct tcgtatcctc attcaacagc gccgccgctt
     1261 ttggttcaaa cgccagcggc acctcacgcg ccaggaaggc ggcggaggcg gtcagctcct
     1321 ccagcgtctt cgcccgctcc ttcagccccg gcatgagctg gtgaatccgc ttcatcgccg
     1381 ccgtgcttac cgtgaggtcg gccgccacga ggcgctgcac cacatcctcc accagccggt
     1441 catcatccgc ctggcgcagc cacatgccgt tgagatgcgt gagcttcgca taatccatcc
     1501 ggctcgccgc ccgccccacg ccttccagcg tgaagagttc tatctgttcc tcgcggccaa
     1561 ggaattcggc atcgccatgc ccccagccca gccgcagcag ataattgcag agcgcctcgg
     1621 gcaggaatcc ctgctcgcgg aattccagaa tcgatacggc tccgtggcgc ttggacagct
     1681 tcgcgccatc cgcgccatgg atcagcggaa tatgcgcgaa ttgcggcttc tcccagccca
     1741 tcgcgtcata aatctgaatc tgccggaacg tgttggtgag atgatcatcg ccgcggatga
     1801 catgggtgat gtccatgtca tggtcatcca ccaccaccgc atgcagatag gtcggcgtgc
     1861 cgtccgagcg cagaatgatc atgtcatcca tctcggcatt cttcacgcgc acctcgccct
     1921 gcacgaggtc ctgcagcacc acttcgccct cgcgcggcgc cttcagccgg atggccggct
     1981 tcatgctttc aggcgcctcg gacggatcgc ggtcgcgcca gcgcccgtca tagcgcggcg
     2041 gacgcttttc ggcgatcgcc tgctcacgca tcgcctgcag ctcttccgcc gtgcaatagc
     2101 atttataggc cttgccctca gccaggagct gcagcgccac ttccacatgc cgcgcctcgc
     2161 gctggctctg atataccggc gcctggtccg ccttcagccc gagccagtcc agcccatcca
     2221 gaatcacctg caccgcttcc tgcgtcgagc gggctttgtc cgtgtcctcg atgcggagca
     2281 ggaactcccc gccatgatgc cgggcaaaga gataattgaa caaggcggtg cgggcgccgc
     2341 caatatgcag cagcccggtg ggggaggggg cgaaacgggt acgtacggtc atgccgcctg
     2401 ttactccgtc gcgccgtatt gtgaaagcgc agcgcccggc gtaacgtggc cacaaccggg
     2461 ggttgctttg ggcgaaatat tcgcgcgctg ggtggaggcg gagcaaggga ggttttttct
     2521 gctcctgccc atcgccacgg gcgcggccat cctcgtttat ttcacactcc ccgccgagcc
     2581 gccgctctgg ctgggtttct cgctcctcac attggcgctg gcagctttgg ccgcgggatg
     2641 gcggcatcct tactggcgct tcgtggccat tctgctcctc gccgccagcc tgggttttgc
     2701 ccgcgcgcaa tggcgcactg cttcagagcc gcctttgctc atcatcccca ccggcccggt
     2761 cgcggtctcg ggcaccattt cccgcatcga gcatctgccc ggcgccagcc gcatcacgct
     2821 catccaggcc cagctggatg ccgggcccgc cttacggcgt gccatcaggc taaaactgcg
     2881 cgcggacgat atgctgcctc tacaggcggg cgagggggtg cgtagctacg ccctgctctt
     2941 tggcccggaa cgcccggctt ggcccggcgg atgggatatg gggcgcgatt attttttttc
     3001 cggcctcggc gcgacgggct ttgctctcac gcacctcacc ctgacgcgca ccgcgccgga
     3061 taatcctttc actgccgggc tgcagaatct ccgcaacaac atcgctgcca ccattctcgc
     3121 cattttgccg cccgatactg gcggcatcgc cgtcaccctg ctcaccggcg atgaacaatc
     3181 cgttcccgca tccatcaggc agaatttcat cgccgccggg cttgcgcata tcctcgccgt
     3241 ggccgggctg catgtcggca tcatcatggg gctggtgttt ttcacatcgc gctggctgct
     3301 cacgcggcat gagcggaccg cgctgcatct gccggcgaaa agcatcgccg caatcctcgc
     3361 cctgctgggt ggcttcggct acgcgctgct taccggcgcg catctaccca tattgcgcgc
     3421 ccttaccatg gcctccctgg ccacgctcgg cgtggcgatg ggcaggcgag ctttctcgct
     3481 tcgcgggctg gcgctggcgg ccttggccct gctgctggcc agcccggaat tggttctctc
     3541 ggccagcttc cagatgagtt tctccgccgt ggcggcgctc atcgccggtt atgccgccgt
     3601 gcgcgaaatg aatttccgcc tgcctctgac acacggccgc gcgagtgcgg cgctgcgcca
     3661 tgtggcgggg ctcgcttata ctagcctgct tgcgggcggc gcctccatgc ccttcgccgc
     3721 ctaccagttc cagcagatcc agccttattg gattccagcc aatctcatcg ccgttccgct
     3781 caccggcttt tggatcctgc cctggggtct cattgcgctg gccctgatgc ccatgcatct
     3841 ggccgccctg gcgctcatcc cgatgggttg ggggataaag ctcatcatca tcctcaccgg
     3901 aatcatcgcc gcttggccgg acgccatgct gcgcatcccg cccatgccgg acgcctccat
     3961 cctgcttatt gccgcaggtc tcgcctcgct gtgcatctgg cgttcagttg ggcgcttcgc
     4021 cggcctgcca atgatggcac tgggccttgc cgttgcgttt gccacccgtc cgccggacgt
     4081 tctggtctcg gccgatgcaa ggctcatcgc tctgcgcaat ggcgcggcgg tcttcgtcgt
     4141 caagcagccc cgggccagtt ctttcgtcct ggagcaatgg caatccatct ggggcacaac
     4201 atcgctcaca ccggcacaat gcacggcgca atcctgtcag gtggggcttg cctggttcac
     4261 cagcttgccc gcctgcgccc cagcccggct cattgccgcg cccattgtca tgccgccttg
     4321 cccggtgccc accatcgacc ggatggccac ctaccggaat ggcgccatag ccgcctggtt
     4381 caccgcccaa ggggtgttca tccgcaccga tcgcgccgca cagggcgccc gcccttgggt
     4441 aattccctat ccacaaccat aaattgcgta atccacaata aatcactaaa gcagcgtgca
     4501 tgagcctgac attgcccagc ctcaccgcgc ccgctgcccc gcctctggcc gaccagctgt
     4561 tggcgctgcg gcggcgctgg cgccttatcc tggcctgcac cctggccatt cccgccatcg
     4621 ctttgaccgt gctgctgctg agccccgcca gctacaccgc tacgggcatc ctgctctacg
     4681 acccggacaa tcaggccatc cccggcgaca acaccaacat tccgcaggac gccgccaacg
     4741 aggacgagat caccgccagc caggcggaaa tcgtcgccag cctgcccgaa gcggcgcaga
     4801 tcgcgcagca gctcaacctt gccgccctgc ccgaatacaa ccccgcccta cgcccgcgcc
     4861 atgtctggtc gtggtttctg cccgccccaa agccgctcac gcaagccgca ctggcgcagc
     4921 gcgtgcagcg cgcccttgcc gtcaatatac tgcccggctc acggattctc accgtctcct
     4981 tcaccagccg cgacccgcaa cgcgccgccg ccgccgctaa tctcgccatg cagctttatc
     5041 tcgatcatca gcgtgacgaa tccttcgccg agctgaccga cgcgcagagc tggctggaaa
     5101 cccattccgc cgacgagcag gcacagctcg acgccaccga agcagcactt gcccaggccc
     5161 gcgccagcgc cgggctggtg cagggcgcgc aggccagcct caccacggag acggtcagcc
     5221 gcctcgccgc cgctttggtg caggcgcaag ccgacatggc gatgaaccag gcccgcctgc
     5281 agtccgccgc cgccgggggc gatgccgcag ccgccaacgc cgccatcgcg ccaaacctgc
     5341 ttcccctgcg ccagcgtcag gccgacctcg ccgcccaggt acagtccctg gccgcgcaat
     5401 tcggccccaa ttacccgccg ctgcaggagg cgcgcagcca gcttgccgcc atcagcggcg
     5461 agatcaatga agaaacgggc cgtgagctgg atgccgcgaa ggctgatctc gccgccaaca
     5521 aggcgcaaat ttttaccctg cagaccgcgc tgaacgccgc ccaggcccag gaacaggcgc
     5581 aggacgagga atccgccccg atacgcgctt tggaacaacg cgccgccgcc gggcaggaca
     5641 tgctgcgcgc c
//
LOCUS       DASQCV010000166         4126 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1359971, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000166 DASQCV010000000
VERSION     DASQCV010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4126
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1359971"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..532
                     /gene="folP"
                     /locus_tag="VEQ16_02490"
     CDS             <1..532
                     /gene="folP"
                     /locus_tag="VEQ16_02490"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HYP62725.1"
                     /translation="AALDAGAKIINDVSALAHDPAALPLAAARGCPVVLMHMRGTPGT
                     MNDRAQYEDVVAEVLAELMAARDKALAAGVAAEAIALDPGLGFAKRGVQNVTLLRATA
                     RFAALGHPLLIGLSRKRFLGEISGEADPARREPESLAAGLFAVGLGAHILRVHDVAGT
                     ARALRVWQSLNARENG"
     gene            525..1895
                     /gene="glmM"
                     /locus_tag="VEQ16_02495"
     CDS             525..1895
                     /gene="glmM"
                     /locus_tag="VEQ16_02495"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HYP62726.1"
                     /translation="MGDLGKRRLFGTDGIRGTANTAPMTPEMALKLGQAAGVLFTRGN
                     HRHRVIIGKDTRLSGYMLEPALTAGFISAGMNVTLAGPLPTPAIAMLTRSLRLDLGVV
                     ISASHNPFEDNGIKLFGPDGTKLSDETEAQIEALMGQDLSDRLAGPEHLGRASRLVDA
                     AGRYVEAAKFSLPRGLRLDGLRIVLDCAHGAAYKVAPAALYELGAEVIPLGVSPDGFN
                     INRESGSTAPKKLCEAVLEHGAHIGIALDGDADRVILADERGEIIDGDQILALIARDM
                     HEAGTLRGGGIVATVMSNLGLERFLGGLGLTLIRTKVGDRYVAETMREKNINLGGEQS
                     GHVILSDNATTGDGLIAALQVLSVLVRSGKRASEACRVFAPLPQLLRNVRYAGASPLA
                     LPHIEAAIAAASARLGTLGRVLIRASGTEPLIRVMAEGEDAALIHEIVDGLCQKIAMA
                     TAEAAE"
     gene            1930..2706
                     /gene="thiD"
                     /locus_tag="VEQ16_02500"
     CDS             1930..2706
                     /gene="thiD"
                     /locus_tag="VEQ16_02500"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012223572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HYP62727.1"
                     /translation="MKRVLTIAGSDSGGGAGIEADLKTISALGAYGCTAITAVTAQNT
                     LGVAAVHTLPADFVALSIKTVLDDIGVDAVKLGMLANEAIIRAVAAALPGDVPVVLDP
                     VMVATSGAVLLEEEAIAAMRSELLRRATLVTPNLPEAAKLTGLPVGTEEERIAAGQAL
                     IAMGAKAALVKGGHGGAEMLTDYLITPEAVEAISLPRLHSTSTHGTGCTMASAIAAGL
                     AQGMTLPGAVRRARAYLQEAIRTAPGFGKGHGPVNHLVRV"
     gene            complement(2728..3510)
                     /locus_tag="VEQ16_02505"
     CDS             complement(2728..3510)
                     /locus_tag="VEQ16_02505"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HYP62728.1"
                     /translation="MTQERSDLQILYRHAAPYPHLVLDNLFPSSCLSEVAEGFEQTAP
                     EYWRTIRSGLQNRKVSAANSPLPPAVQHYFNILHSGPFTRFLSEVTGIGDLIPDPALF
                     GGGMHQTSGGGTFEVHVDFEQNPRTLLRNRLAVITYLNKDWTNEDGGALELWRLKPKA
                     CMATITPVFGRTVIIGQSRKAAHGHLQPIRNGRIRRAVTAYFYTNGTRLSLSTSLLPT
                     GYFARRGMTFQQNMEYVVRLVTPPLLLSGVRTLAQRLGGRSG"
     gene            complement(3943..>4126)
                     /locus_tag="VEQ16_02510"
     CDS             complement(3943..>4126)
                     /locus_tag="VEQ16_02510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62729.1"
                     /translation="SKRLKLLAQTKTWGRSALPSPHISGLYERLGARVAILKAAIITL
                     QILKIRDFCGASSRSG"
BASE COUNT          747 a         1176 c         1427 g          776 t
ORIGIN      
        1 ggccgcgctg gatgccggcg ccaaaattat caacgatgtg tcggccctgg cccatgaccc
       61 ggccgccctg cctttggcgg cggcgcgggg gtgcccggtg gtgctgatgc atatgcgcgg
      121 cacgccgggg acgatgaatg accgcgccca atatgaggat gtggtggccg aggtgctggc
      181 ggaactgatg gcggccaggg ataaggcctt ggcggcgggg gtggcggcgg aagccatcgc
      241 gctcgacccc ggactcggct tcgccaagcg cggcgttcag aatgtcaccc tcctgcgcgc
      301 caccgcgcgt ttcgcagccc tgggccatcc gctgctcatc ggcctctcgc gcaagcggtt
      361 tctgggcgaa atctccggcg aggccgaccc ggcccggcgc gaaccagaat ccctggcggc
      421 ggggctgttt gccgtggggc ttggcgcgca tatactcagg gtccatgacg tggccgggac
      481 agcgcgcgct ttgcgcgtct ggcagagttt gaatgcgaga gagaatgggt gatttgggta
      541 aacgccggct gttcggcacg gatgggatca ggggcacggc caatacggca cccatgacgc
      601 cggaaatggc gctgaagctg ggccaggcgg cgggggtgct gttcacgcgc ggcaaccaca
      661 ggcaccgggt catcatcggc aaggatacga ggctttcggg ctatatgctg gagccggccc
      721 tcaccgcggg cttcatctca gcgggcatga atgtgaccct ggccgggccg ctgccgacgc
      781 cggccatcgc catgctgacg cgctcgctgc ggctggattt gggagtggtc atctccgcct
      841 cgcataaccc gttcgaagat aacgggataa agcttttcgg cccggacgga acaaaactct
      901 cggacgagac ggaggcgcag atcgaggcac tgatgggcca ggatctctcg gaccgcctgg
      961 ccggaccaga gcatctgggc cgcgcctcgc gcctggtgga tgcggcgggg cgctatgtgg
     1021 aggcggccaa attctccctc ccgcgcggcc tgcggctgga tggcttgcgc atcgtgctcg
     1081 attgcgccca tggcgcggcc tataaggtgg ctcccgccgc tctgtacgag ctgggggcgg
     1141 aggtgatccc gctcggggtt tcgccggacg ggttcaacat caaccgcgag tcgggctcca
     1201 cggcgccgaa gaaattatgc gaagcggtgc tggagcatgg ggcgcatatc ggcatcgcgc
     1261 tggatggcga cgcggaccgc gtgatcctgg ccgatgagcg cggcgagatt atcgatggcg
     1321 accagattct cgccctcatc gcgcgcgaca tgcatgaggc aggcacattg cgcgggggcg
     1381 gcatcgtcgc cacggtgatg tccaatctcg ggctggagcg gtttctgggc gggctgggcc
     1441 tgacgcttat ccgcaccaag gtgggcgacc gctatgtggc cgagaccatg cgggagaaga
     1501 acatcaatct gggcggcgag cagtcggggc atgtcatcct gtccgacaat gccaccacgg
     1561 gggatgggct gatcgcggca ttgcaggtgc tctcggtgct ggtgcggagc ggcaagcgcg
     1621 cttccgaggc gtgccgcgtg tttgcgccgt tgccgcagct tttgcgcaat gtgcgctatg
     1681 ccggggcctc gcctttggcg ctgccgcata tcgaagctgc catcgcggcg gcctctgccc
     1741 ggctgggcac gctgggccgc gtgctcatcc gcgcctcggg cacggagccg ctgatccgcg
     1801 tgatggcgga aggcgaggat gcggcgctga tccacgagat tgtggacggg ctgtgccaga
     1861 agattgcgat ggcgacggcg gaagccgctg aatgaggcgc gtggggatgg tggggcggcc
     1921 acgcgcatca tgaagagagt tttgacgatt gcagggtcgg attctggcgg cggggcgggc
     1981 atcgaggccg acctgaagac gatttccgcg ctcggcgcct atggctgcac ggcgattacc
     2041 gccgtcacgg cgcaaaacac gctgggggtg gccgcggtgc atacgctgcc ggcggatttc
     2101 gtggctttat ccatcaagac cgttctcgat gatatcggcg tggacgcggt gaagttgggc
     2161 atgctggcca atgaggcgat catccgcgcc gtggccgccg cgctgccagg cgatgtgccg
     2221 gtggtgctgg acccggtgat ggtggcgacc tcgggtgcgg tgctgctgga ggaagaggcg
     2281 attgccgcca tgcgcagcga acttttgcgc cgcgccacgc tggtgacgcc caatctgccc
     2341 gaggctgcga agctgacggg cctgcctgtg ggcacagaag aagagcgcat cgcggccgga
     2401 caggcgttga tcgccatggg cgccaaggcg gccttggtga aaggcgggca tggcggagca
     2461 gaaatgctca ccgattatct catcaccccg gaagctgtgg aggccatttc gctcccccgg
     2521 ctgcacagca ccagcacgca tggcacgggc tgcaccatgg ccagcgccat tgcggccggg
     2581 ctggcgcagg ggatgacgct gcccggcgcc gtgcgcaggg cgcgggctta tttgcaggag
     2641 gccatccgca ccgcgccggg gttcggcaag gggcatgggc cggtgaatca tctggtgcgg
     2701 gtttagtgcc gtgctgatgt gagatagcta gccggaccgg ccgccaaggc gttgtgcgag
     2761 cgtccgcaca ccgctcagga gcagaggagg cgtaaccagc ctcaccacgt actccatatt
     2821 ttgctggaac gtcattcccc tacgagcgaa ataaccggtt ggaagcaagc tggtggagag
     2881 tgagaggcgg gttccattgg tgtagaaata ggccgtaaca gcgcgccgga tacggccgtt
     2941 acggatgggc tggagatggc catgggccgc tttcctcgac tggccgatga tgacggtgcg
     3001 gccaaagacg ggtgttatgg tcgccatgca cgcctttggt ttgaggcgcc agagttcgag
     3061 cgctccccca tcctcgttcg tccagtcctt gttcagataa gtgatgacgg cgaggcggtt
     3121 tcttaagagg gtacgcggat tttgctcgaa atcgacatgt acttcgaatg tgccgccacc
     3181 cgaggtttga tgcatgccgc cgccgaataa cgcggggtcc gggatgagat ctccgattcc
     3241 cgttacctcc gagaggaagc gcgtgaaagg gccggaatga aggatattga aataatgctg
     3301 aaccgccggc ggaagaggag aattggcggc ggatactttc cgattctgca ggccggagcg
     3361 gatcgtccgc cagtattccg gtgccgtctg ttcgaacccc tccgcgacct cgctgaggca
     3421 gctggacgga aacagattat ccagcacgag atgagggtaa ggggccgcgt gccgatagag
     3481 aatttgcaga tcgctccgct cctgggtcat gacgccgtca aaagcaggcc aaatagtctg
     3541 ccggttggtc atggcggctt tactccttga atgccggcgg cgcgccaggg acgaacacgc
     3601 aactgatact tgcatacgct gaacatgaac aacccaaaaa catttgatgg ttgcatgaca
     3661 tgacatttag atggatatct cgtaaccacc cctggcggat catgaggcag atcatcacca
     3721 gccggatcag ggcttcctca cctttcgcca tggattcgat gagatcgtac caagcggttg
     3781 ctcatcaacg ggaacgatcg tctgtatcga gatcattcgc aggctttgcg atcttacttt
     3841 ctggtaagac aggcaaatgt tttccatgcc ggattattgc ggcttaagcc gattttgctt
     3901 gcctcaccgg tggcgatggc ccggcatggc aatgagcgtc cttcagccgg agcgggatga
     3961 ggctccacaa aaatctcgaa ttttgagaat ttgtaatgtt atgatggccg ctttcaggat
     4021 cgcaacccgt gccccaagcc tctcatacaa gccacttata tggggtgaag gcagcgctga
     4081 acggccccaa gtttttgttt gagcaagtaa tttcagacgt ttagat
//
LOCUS       DASQCV010000167         2007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2686354, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000167 DASQCV010000000
VERSION     DASQCV010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2007
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2686354"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..967)
                     /locus_tag="VEQ16_02515"
     CDS             complement(<1..967)
                     /locus_tag="VEQ16_02515"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62730.1"
                     /translation="MLLTVLLLLGSAGLIYLSCEFFVNGVEWVGYRLRIAETATGTIL
                     AAFGTALPESVVTFVAVVFGATVAERELGVGAALGGPLALSTLAYSVVGLTLLGSKHL
                     KVRRKAALQVDCQRLARDQGWFLSIFLCKLALGLVAFPGKQWFGFLFLAAYAVYVWQE
                     LRRNGDQHEADELEPLKFRPALAQPPLRWAALQTATALVVIFIASRVFVAQLDTIGPW
                     LGMKPQLVALLFSPIATEMPETMNAIIWVRQGKERLALCNISGAMMIQATVPTACGLF
                     GTPWLFSPPVILAGCITAIAVACLFLMFRGGRVTGKQLSWASLLYL"
     regulatory      complement(977..1160)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00080"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="yybP-ykoY riboswitch is a manganese riboswitch that
                     directly binds Mn; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="manganese"
                     /db_xref="RFAM:RF00080"
     gene            1300..1827
                     /locus_tag="VEQ16_02520"
     CDS             1300..1827
                     /locus_tag="VEQ16_02520"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP62731.1"
                     /translation="MQDDRSEIVNLINLYGFAVDTQCWDLFDRIFTQDVEADFSASAH
                     WHDLASFKRDFALFHDPFDSTQHAMLNHLVRVDGDTAHAFTYGNWRLIRKAVDGDPRW
                     DGTGWYDDALIRTDTGWRIKKHVCRIISWHGNPFVNETIPGVKFELSTSVLRREGEAG
                     RVGFLNAILGRGGLA"
BASE COUNT          427 a          655 c          610 g          315 t
ORIGIN      
        1 ccagatatag caggctcgcc cagctcagct gcttccccgt cacccgcccg ccacggaaca
       61 tcaagaacag gcacgccacg gcgatggcgg tgatgcagcc ggccaggatc accggcggcg
      121 aaaacagcca gggcgtgccg aacagcccgc aggccgtcgg cactgtcgcc tggatcatca
      181 tggcgcccga gatgttgcac aaagccagcc gctccttgcc ctggcgcacc cagatgatgg
      241 cgttcatcgt ctccggcatt tccgtggcga tggggctgaa cagcagcgcc acgagctgcg
      301 gcttcatgcc gagccacggc ccgatcgtat cgagctgcgc cacgaacaca cgcgaggcga
      361 tgaagatgac cacgagcgcg gtggcggtct gcagcgcggc ccagcgcagc ggcggctgcg
      421 ccaaggccgg gcggaatttc agcggctcca gctcatctgc ctcatgctgg tcgccgttgc
      481 ggcgcagctc ctgccacaca taaaccgcgt aggcggcaag gaagaggaag ccgaaccatt
      541 gcttgccggg aaaggcgacc agccccagcg ccagcttgca gaggaagatg ctcagaaacc
      601 agccctggtc gcgggccagg cgctggcaat ccacctgcaa agccgccttg cgccgcactt
      661 tcagatgctt ggagcccagc aaagtcagcc ccaccacgga ataggccaaa gtgctcagcg
      721 ccagcggtcc gcccagggcc gcccccaccc ccagctcgcg ctccgccacc gtggcgccga
      781 agaccacggc cacgaaggtg accacgctct ccggcagggc cgtgccgaag gcagccagga
      841 tggtgcccgt cgcggtctcg gcgatgcgca gccggtagcc gacccattcc acgccattga
      901 cgaagaattc gcacgacaaa tagatcaggc cagcagagcc gagcaggagc aaaaccgtca
      961 ataacatcaa caacatcccg gccagggccc acgcaatgac acccccgccc gcggcccggc
     1021 cggcccgcaa gcagtgatgt caaaggtctt gccaaacctg gatggaacat cagcgccatg
     1081 gccctccgtt actctggtac agccaagtat gttgacgctg atcccgcgaa agcgggcggc
     1141 tactccccaa tgaccgggtt attctaagga gggcttccgc aaagtaaagc cctgtaacat
     1201 gttgcgttgc agcaagaggc gcgccgcaag agtcaagccg attgatccac gcccagatcg
     1261 cttgcgatgg atggagcaaa taaaagcagg agcggaaaca tgcaggatga caggagcgaa
     1321 atcgtcaatc tcatcaatct ctacggtttc gcggtcgata cgcaatgctg ggacctgttc
     1381 gaccgtattt ttacgcagga tgtagaggcc gatttcagtg cgagcgcgca ttggcacgac
     1441 ctcgccagct tcaagcgcga tttcgccctg ttccacgacc cgttcgattc cacccagcat
     1501 gcgatgctga accatctcgt gcgggtcgac ggcgatacgg cccatgcctt cacctacggc
     1561 aattggcgcc tcatccgcaa ggcagtggat ggcgacccgc gctgggacgg cacgggctgg
     1621 tacgatgacg cactgatccg cacggatacc ggctggcgca tcaaaaaaca cgtctgccgt
     1681 atcatcagct ggcacggcaa cccgttcgtc aacgagacga ttccgggcgt aaaattcgag
     1741 ctgagcacca gcgtgctgcg ccgcgagggc gaggcgggca gggttgggtt tctcaacgct
     1801 attctggggc gcggcggatt ggcgtgaggt tcgggtttcg gcccaacagc gagtctcgac
     1861 cgtgagagcg gcttccttgg aagcggtcat gcaggggtcg ccgcgcgatt tgtccaaaac
     1921 tgcaagctaa ggaactcgtc cccctgcggc cacctggcta gttccggccg gcggcggcaa
     1981 ctgaccgtcg tttttaaagt gcaaacg
//
LOCUS       DASQCV010000168         2672 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2521940, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000168 DASQCV010000000
VERSION     DASQCV010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2672
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2521940"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..429
                     /locus_tag="VEQ16_02525"
     CDS             <1..429
                     /locus_tag="VEQ16_02525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62732.1"
                     /translation="LASLARAQGVNVLIDLVPEQIAWVFSSIVVRRADIAQRRDMLLR
                     FLKATAEGNHIALGDAGRARRVLAKELGITDAKILDIAYDDFRAQSPPNIEISLQGAE
                     NILAQFPGGSHKVEDYVDMSLIDALRAEAFFSGIDRKYAQ"
     gene            complement(553..>2672)
                     /locus_tag="VEQ16_02530"
     CDS             complement(553..>2672)
                     /locus_tag="VEQ16_02530"
                     /inference="COORDINATES: protein motif:HMM:NF012862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004197 - cysteine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="caspase family protein"
                     /protein_id="HYP62733.1"
                     /translation="FRDFVEKATSSGPDTVAFIYVSGYGVQLEGENYFIPIDAKIPRD
                     ADVPSEALRISDYSRPLAALKLKASVVVLDTARANPFAQSGQPLAGGLALVEPDPGVL
                     VAFSSAPGTVAPEGQGPYGPYAQALAEMIREGGLPLNGVFDRTRLRVNDLTSGAEVPW
                     YASNVQTPVVFFERAADAPPPAVSVEEAAAIRARPFRELGAQEAYVVALERDTIEGYT
                     QFIDAYPDDPMARRARALIAARREAITWRRSRLVDTPAAYWSYLGRYPEGPHCWDARR
                     RLAFLRAAFDPPPRFTALAYDLPPPPAEEIVFVRRPVLVFSDPVFGFAPPPPAPIVFL
                     APPPPEFVILPPPPPPIGLFVLPMPVYRPVPVWVAPPRYVAPPPPNNVIYNNVHNTVV
                     INNVTNTVTVTNQTGQTKTIAPPVAAAAAPGQPGVNTAAAPAAIGPSLPPSVAQKAAL
                     QTQTQTPNAAGAQSGTPGQAAKPAPGQALPGMQGQPLPAPKGSSTPATALAPATTPPP
                     PAGAKPGTPAAQPPASAAVNPANPPKPGAPAPKVPAAKNAGTPSSPSAAIAPDATAPA
                     KPSASGAASKKGSPTAKATPSGSLPAPTGGIQSGPPPVPPAAAKPALAPPPPAAKLAP
                     PPAPPKPAAPPPAAARVAPPPPAPHVTPPPPTAHVAPPPPAAAPPPKPPAMAPAAAAA
                     RPAAPACPAGKTPAVVNGQHICK"
BASE COUNT          425 a          786 c          990 g          471 t
ORIGIN      
        1 ctcgcgtcgc ttgcgcgcgc ccaaggggtt aacgtgctga ttgatctcgt gcccgagcag
       61 attgcctggg tattcagctc gattgtcgtg cgccgagccg atattgcgca acgtcgggac
      121 atgctgctgc ggtttttgaa ggccaccgcg gagggcaatc atatcgcgct gggcgatgcc
      181 gggcgtgcca ggagagtatt ggccaaggag cttgggatca cggacgccaa gattctcgac
      241 atcgcctacg atgatttcag ggcgcagtcg ccgccgaaca tcgagatctc attgcaaggc
      301 gccgaaaata ttctggcgca attccccggc ggcagtcaca aggtggagga ttacgtcgat
      361 atgagcctca ttgacgcatt gcgcgccgag gccttcttct ccggcatcga tcgcaaatac
      421 gctcaatagc cggtgggtgg tagcccgggt tgagcgcgaa gcgaaacccg ggaaccccgc
      481 gtttcgttga gcctgtcatc gggcggcgct ccgcgccgac ccgatggctc aacgcgggct
      541 acggtttccc acctacttac aaatgtgttg tccgttcacg accgcggggg ttttcccggc
      601 cgggcatgca ggagctgccg gtcttgcggc agcagccgct ggcgccatgg ctggcggctt
      661 gggcggtggc gcagcagcgg gtggcggcgg tgccacatgc gccgtcggcg gaggcggtgt
      721 cacgtgaggt gccggaggtg gtggggcaac gcgggctgct gccggcggcg gagccgctgg
      781 ttttggtggt gcgggcggcg gcgcgagctt ggctgccggg ggcggcggtg cgagggcggg
      841 ctttgcagca gcgggtggga ccggaggcgg cccggactga atgcctcctg ttggcgccgg
      901 cagcgatccc gaaggagttg ccttcgcggt tgggcttccc ttctttgagg ctgcgccgga
      961 ggcagatggc tttgcgggcg ctgtcgcatc gggtgcaatc gccgccgatg gggatgatgg
     1021 cgtgcccgcg ttctttgctg ctgggacctt tggcgcgggc gcgccaggct tgggcggatt
     1081 ggccggatta actgcagccg aagcaggcgg ctgtgcggcg ggcgttccgg gcttggcacc
     1141 agccggcggg ggcggtgtcg tagcgggagc gagtgcggtg gctggcgtgc tcgacccctt
     1201 tggggcaggc agcggttggc cttgcattcc gggcagcgcc tggcctggag caggcttggc
     1261 tgcttggccg ggggtgccgg attgtgcgcc ggcagcgttc ggagtctgtg tctgggtttg
     1321 caaggccgcc ttttgcgcga ccgatggtgg gagcgatggt ccgatggcag ccggtgcggc
     1381 cgccgtattt acgcccggct gcccgggggc cgccgctgcc gcaaccggcg gcgcaatggt
     1441 tttggtttgg ccggtctggt tcgtaacggt caccgtgttg gtgacgttat tgatgacgac
     1501 cgtattgtgc acgttgttgt agatcacgtt attgggcggt ggcggcgcca cgtagcgcgg
     1561 cggcgccacc caaactggga ctggccgata gaccggcatc ggcagaacaa acaatccaat
     1621 cggcggcggc ggtggcggca ggatcacgaa ctccggcggt ggcggcgcca ggaagacgat
     1681 gggagccggc ggcggtggtg cgaagccaaa taccgggtcg ctgaaaacca gaaccggtcg
     1741 ccgcacgaag acgatctctt cggccggcgg cggcggcagg tcatacgcca atgcggtgaa
     1801 gcgcggcggc ggatcgaagg ctgcccgaag aaatgcaagc cggcgccgcg catcccagca
     1861 atggggccct tcggggtagc ggcccagata cgaccagtat gctgcaggcg tatcgacgag
     1921 ccggcttcgt ctccacgtga tggcctcgcg ccgggccgcg attaaggcac gcgcgcgccg
     1981 cgccatggga tcgtcgggat aggcgtcgat aaactgcgtg tatccctcaa tcgtatcgcg
     2041 ctcgagcgcg acgacgtagg cctcctgggc gccgagctcg cggaagggcc gcgcgcggat
     2101 ggcggcggct tcctccactg aaacggcagg tggcggcgca tcggctgcgc gctcgaagaa
     2161 cacgaccggg gtctgtacgt tggacgcata ccacggcacc tcggcgccgg aggtgagatc
     2221 attgacgcgc agccgggtgc gatcgaatac gccgttgagc ggaaggccac cctcgcggat
     2281 catttcagcg agcgcctgtg catagggtcc atacggccct tgcccttccg gcgcgaccgt
     2341 gccgggcgca gagctgaaag cgaccaggac ccccggatcc ggctcgacca gcgcaaggcc
     2401 acccgccagc ggctgcccgg attgcgcaaa aggattggcg cgggcggtat ccagaacgac
     2461 gacgctggcc ttgagcttga gggcggcgag cggccggctg taatcggaaa tacgcagtgc
     2521 ctccgaggga acgtctgcat cccgcggaat tttcgcatcg atcggaatga aatagttctc
     2581 gccttcgagc tgcacgccgt aaccgctgac gtagatgaag gcgacggtat ccggaccgga
     2641 gctggtcgct ttctccacaa aatcgcgaaa cg
//
LOCUS       DASQCV010000169         1928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1029676, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000169 DASQCV010000000
VERSION     DASQCV010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1029676"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..833
                     /locus_tag="VEQ16_02535"
     CDS             <1..833
                     /locus_tag="VEQ16_02535"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HYP62734.1"
                     /translation="QRGHIRACKRFAAFLKRSPDTAAADDVRGFQLHLMEDGASIQTR
                     NRTMTGVRFLFRITLRRHDLAAEVYHIKEPLNLPLTLSQEEAKRLITVAGAKSLKLRL
                     MLALGYGCGLRAGEVMRLRAGDIDSAQGIIRVVQSKGRKDRHVMLPDEVLDLLRQWWK
                     ERPTRYDAGVPPLERLVFPGRKGGKPLTTRQLNRLFHEACQAAGIQKRVTLHSLRHSF
                     ATHLLDQGTDIRLIQAVLGHDKLDTTARYTRVATGRIAGIASPLGGKKKRPRKKGKAA
                     "
     gene            843..>1928
                     /locus_tag="VEQ16_02540"
     CDS             843..>1928
                     /locus_tag="VEQ16_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010668084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HYP62735.1"
                     /translation="MPRPVLEVADILRDHGAAWRHANRGHVSLEQLKVISAIERCRTA
                     ALGGHVARCENEGCGHTLIAFNSCRNRHCPKCQGSAAREWLAERQAELLPVPYFHVVY
                     TLPARIADIAYQNKAAIYGILFKASAETTLRIAADPKRLGARIGFISVLHTWGSAMTH
                     HPHVHMIVPGGGLSADGQNWIAGRPDYLLPVPVLSQLFRGLVLSLLLEAHADGRLRFF
                     GEHAALADEKAFKAFLAPLWRADWVVYAKRPFSGPAAVLAYLARYTHRVAISNSRLIA
                     AGANGVTFKYKDYRVEGPERYKVMTLAPHEFIRRFLLHVLPKGFHRIRHYGLLANGGR
                     AENIAKARALLAVSPAAEATGAGAAEKA"
BASE COUNT          342 a          634 c          611 g          341 t
ORIGIN      
        1 cgcagcgggg ccacatccgc gcttgcaagc gctttgccgc ttttctcaag cgttcgccgg
       61 acacggcggc cgcggacgat gtgcgcggct tccagctgca tttgatggag gacggggcga
      121 gcattcagac ccgcaaccgg acgatgaccg gtgtcaggtt cttgttccgg atcacgctca
      181 ggcggcacga tctggcggcc gaggtctatc acatcaaaga gccgctcaac ctgccgctta
      241 ctttaagcca ggaggaggca aagcggctga ttaccgtggc cggcgcgaag agcctcaagc
      301 ttagacttat gctggcgctt ggctatggct gcgggcttcg cgccggggaa gtcatgaggc
      361 tcagggccgg cgacatcgac agtgcgcaag gcattatccg ggtcgtgcag tctaaaggcc
      421 ggaaggaccg ccatgtcatg ctgccagatg aagtgctgga cctgctgcgg caatggtgga
      481 aggagcggcc aacgcggtac gatgctggtg tgccgccgct ggagcgcctg gttttccccg
      541 gacgcaaagg tggcaagccg ctgacaacgc gccagctcaa ccgcctcttc cacgaggctt
      601 gccaggcggc gggtatccag aagcgcgtca ccttgcattc gctgcggcat agctttgcta
      661 cgcatctctt ggatcagggt acggacattc gtctgatcca ggcggttctg ggccacgaca
      721 agctcgacac gacagcgcgc tacacgcgcg tcgccacggg ccggatcgcg ggcattgcga
      781 gcccgctcgg cggcaagaaa aagcggccga ggaagaaggg caaggccgcc tagcccgccg
      841 ccatgccccg gccggtgctg gaggtcgcgg acattcttcg cgatcacggc gccgcatggc
      901 gtcacgccaa ccgcggccat gtcagccttg agcagttgaa agtgatatca gccatcgagc
      961 gctgccgcac agcggcgctc ggcggccatg ttgcgcgctg cgagaatgaa gggtgcgggc
     1021 atacgctcat cgcattcaac agctgccgca accgccattg cccaaaatgt caaggaagcg
     1081 ccgcgcggga gtggctcgcc gagcgccagg ccgagctttt gcccgtgccg tatttccatg
     1141 tggtgtacac gctgcccgct cgcatcgccg atatcgcata ccagaacaag gccgcgatat
     1201 acggcatcct gttcaaggcc tcagcagaga ccactctcag gatcgccgcc gatcccaagc
     1261 ggcttggcgc gcgcatcggg tttatctcgg tgctgcacac ctggggatcg gccatgacgc
     1321 atcacccgca cgtgcatatg atcgtgccgg gcggcggcct ctccgccgac ggccagaact
     1381 ggatcgccgg acggcccgat tatctcctgc cagttcctgt gctatcgcag ctgttccggg
     1441 ggcttgtcct ttccctgctg ttggaagcgc atgccgacgg gcgcctcagg tttttcgggg
     1501 agcatgccgc gctcgccgat gagaaagcgt tcaaggcctt cctcgccccg ctatggcgcg
     1561 ccgactgggt ggtctacgcg aaaagacctt tttccggccc cgccgctgta ttggcctatc
     1621 tcgcccgcta cacccatcgc gtcgccatct ccaacagccg cctgatcgcg gccggcgcca
     1681 atggcgtcac cttcaaatac aaggactacc gcgtcgaggg gccggagcga tacaaggtca
     1741 tgacgctcgc cccgcatgag ttcatccggc gtttcctcct gcatgtgctc ccaaaggggt
     1801 ttcaccgcat ccgccattac gggctcctcg ccaatggcgg gcgcgcggag aacatcgcca
     1861 aggcccgcgc gctgctcgcc gtttcgcccg cggcggaggc caccggcgct ggagccgccg
     1921 agaaagct
//
LOCUS       DASQCV010000170         1503 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1693325, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000170 DASQCV010000000
VERSION     DASQCV010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1693325"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..228
                     /locus_tag="VEQ16_02545"
     CDS             22..228
                     /locus_tag="VEQ16_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HYP62736.1"
                     /translation="MRLSARNQIKGKVVGVQKGQTTGHVRIDIGQGVVITSSITNEAI
                     DDLDLKIGDEAIAVIKASDVMVAK"
     gene            complement(360..1247)
                     /locus_tag="VEQ16_02550"
     CDS             complement(360..1247)
                     /locus_tag="VEQ16_02550"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYP62737.1"
                     /translation="MSAIVIDYVLAAPVALQAQLTVQGFTALLGRSGEGKTSLLRALA
                     GLLPATGTPWQGQAPEKRPVGYLPQETLLFPHLSVLENTAYALRGRSRKDKAQALLEE
                     LGLAALAARRPHELSGGQAKRVALARALARGMELLLLDEPSSGLDTMTRDATLDWLIE
                     TTAARRVPVLAATHDHEVAARADHLALLADGRIIQHGRARDVFEAPVSRAAAELLGYE
                     NVFEQDGALWAIRSTGIFPDEAGEPFPVRTVRETGTGLRLSCGDEHPLMVDLPDGRLD
                     DYLPGNILRLNLCAKKRIG"
     gene            complement(1244..>1503)
                     /locus_tag="VEQ16_02555"
     CDS             complement(1244..>1503)
                     /locus_tag="VEQ16_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfate ABC transporter permease"
                     /protein_id="HYP62738.1"
                     /translation="LKARLRVTLPLARRGLAAALALAWVRALGEFGIVLMIAYYPAGM
                     PVQLWTDVQDLGLQAVFPLVTIFLLATLPVPLWLGLRARAR"
BASE COUNT          290 a          487 c          477 g          249 t
ORIGIN      
        1 ataaacggtt ggagacggac catgcgtttg agcgcgcgta atcagatcaa gggcaaagtg
       61 gtcggtgtgc agaaggggca gacgaccggg catgtgcgga ttgacatcgg ccaaggtgtc
      121 gtcatcacgt cgtcgatcac aaatgaggcg attgatgatc tggatctcaa gatcggtgac
      181 gaagcgatcg cggtgatcaa agcctcggat gtgatggtgg cgaagtaggc tgcgcctttc
      241 cggtgtgggg ctcgcggcag tacttggcac cgtcccagtt ttctcgtggt ctcagacagt
      301 gatggttcga ggaaccgtca ggtaacgccg tcgcgctgcg ttgccagggt cattgccgtt
      361 cagccgatcc gctttttcgc gcataaattt aaccgaagaa tgttccccgg caggtaatca
      421 tccaggcgtc cgtccggcag gtccaccatc aggggatgtt catccccgca actcaggcgc
      481 aggcccgtgc ccgtctcgcg tacagtgcgg accgggaagg gctcacctgc ttcgtcggga
      541 aaaatgcccg tggaacggat cgcccatagc gccccgtcct gttcgaacac attctcataa
      601 cccagaagtt ccgcggcagc ccggctcacg ggggcttcaa acacgtcgcg cgcgcggcca
      661 tgctggatga tccgcccgtc ggcgagcaac gccagatggt ccgcacgcgc ggcaacttca
      721 tggtcatggg ttgccgccag caccggcaca cgccgggcag cggtggtctc gatcagccaa
      781 tccagagtgg cgtcacgcgt catcgtgtcc aacccgctgg aaggttcgtc gagcaggagc
      841 aattccatgc cgcgtgccag cgcccgcgcc agcgccacgc gcttggcttg cccgccggac
      901 agctcatgcg gccgccgcgc cgcgagcgcc gcgagcccga gctcctccaa caatgcctgc
      961 gccttgtcct tccgtgaacg cccacgcagc gcataggccg tgttttccag aaccgagaga
     1021 tgaggaaaca ggagcgtctc ctggggcaga taccccaccg gccgcttttc gggcgcttgc
     1081 ccctgccagg gcgtgcctgt tgccggaagc agaccggcca gcgccctcag cagcgaggtt
     1141 ttgccctccc cggaacgccc gagcagggcg gtgaatccct gcacggtgag ttgcgcttgc
     1201 aatgcaacgg gcgcggccag cacgtagtcg atgacgatgg cactcatctg gcacgcgccc
     1261 tcaaccccag ccaaagcggc acggggagcg tggcgaggag aaaaatagtg accagcggaa
     1321 acactgcctg caggcccaga tcctgcacat ccgtccagag ctggactggc atgccggcgg
     1381 gataataggc gatcatcaga acaatgccga attcccccag cgcccgcacc caggccagcg
     1441 ccagcgcggc cgcgaggccg cgccgcgcca gcggcagggt cacgcgcagc cgggccttca
     1501 atg
//
LOCUS       DASQCV010000171         3539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_533490, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000171 DASQCV010000000
VERSION     DASQCV010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3539
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_533490"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            225..734
                     /locus_tag="VEQ16_02560"
     CDS             225..734
                     /locus_tag="VEQ16_02560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62739.1"
                     /translation="MQARNSLMLAALMLLASSPALAQTMTDDMSQTGPQSVTGARPGN
                     DIGTRDSLPRSPAASNITSADTNSTIAPTPPEPSVGPDAGVNALLSSANQSLATGETG
                     QANEALEQAETQILQRSVLKTQTDYTSTDPVVAQIDQARLAIGNRDNEDATRIIDQIL
                     SGGSPELSE"
     gene            872..1612
                     /locus_tag="VEQ16_02565"
     CDS             872..1612
                     /locus_tag="VEQ16_02565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYP62740.1"
                     /translation="MISDTALTVRGLCKSFGRKVVENLDLTIRPGEFYALLGPNGAGK
                     TTTLRMIAGLMRPDAGGIEVFGRDVLADPLGAKSIMAWIPDEPLLYDKLSPLEYLEFI
                     AGLWRVEPGTARARAGELLETLGLWPHRHERCEGFSRGMKQKTVLAGALIHEPKFLLL
                     DEPLTGLDAASSRLVKELLRAETEKGAAIILTTHILEVAERLATRIGILSGGALLAEG
                     DLDTLKAQAGLTHGSLEDVFLHLTAVCS"
     gene            1612..3048
                     /locus_tag="VEQ16_02570"
     CDS             1612..3048
                     /locus_tag="VEQ16_02570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62741.1"
                     /translation="MFTAPGFPWLLRHELRVLWRGSILVRTHRHVIVPVLVVAVLFQG
                     VALALARQVAAHPVALPTMLLAANINIVFLFALMFSRAMTSSIDVIYGRGDADFLLAS
                     PIPPDRVLAVRMLGVACSIAAPWMLLGGVLGNGLAIYGQYWGLCVYPMFFAEALLVAA
                     AAFAFVVVLLRFISPQATRRAGHTLALITGVGIFVIGQAPRFVPQHVVAKFWASLLPG
                     PDGGGLAFLFARGLLGEPFALSASLAFALAGFCIVWFFLAKPFADGVITAAASRPRGR
                     PAAQTGQFRASPFAAALAKDLRLLGRFPGIFTQIIYRSLTLVPVAFILTGKFHMEAGM
                     GAAVPLIVFLAGQLGLFFISVLAGCETIPELIASAPVLVRTPARAAAVASVYSTLFII
                     AAPLLAVLARAPQLLPSLALGIAGVLLSNVLLGQRMPIPLVRASFGKTSTGTVVGLIL
                     GVSVSTIWSFATWLIVAPNPLAWLTPGN"
     gene            complement(3063..3230)
                     /locus_tag="VEQ16_02575"
     CDS             complement(3063..3230)
                     /locus_tag="VEQ16_02575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62742.1"
                     /translation="MQGFIKTLFGDKRTLAVAGLSILAALAVLHTPAAVLAGLVLPFC
                     LLGGAAYLARH"
     gene            complement(3230..>3539)
                     /locus_tag="VEQ16_02580"
     CDS             complement(3230..>3539)
                     /locus_tag="VEQ16_02580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62743.1"
                     /translation="VALGVQTGHTLAAAGAAIAALAAVGAAGALLRQPLARVPENVIK
                     FTVGAAVLGFGTFWVLEALGYAWPLGDAALPLLFAFYVAGGLALIRLYTPKPKGAELV
                     "
BASE COUNT          541 a         1236 c         1097 g          665 t
ORIGIN      
        1 gccgacgacg acgaccacga ccaccgagca gaccactcag ccggtgcagc agatgcagat
       61 ggcgccgccg ctcgtgcctg gcacgcccgg cacggtgacg acgaccagca cgcatagcga
      121 atcctacccg gccgcccagt agcggccggg cccctgcgcc ctgccggata ggccgtgagg
      181 cgtttccggc agggcgatcc tgctcgttga atcaggagag tcttatgcaa gctcgaaact
      241 ctttgatgct ggcagcgctg atgctgctgg ctagctcgcc cgccctggcg cagaccatga
      301 cggacgatat gtcgcagact ggcccgcaaa gcgttacagg cgcgcggccg ggcaatgata
      361 tcggcacgcg cgattcgctg ccgcgctcac ccgcggccag caacatcacc tctgccgata
      421 cgaattccac catcgctccc acgccgcccg aacctagcgt ggggccggat gccggggtga
      481 acgcgctgct gtcctccgcc aaccagtctc ttgccactgg cgagaccggc caggcgaacg
      541 aggcgctgga acaggccgag acgcaaatcc tgcagcgctc cgtgctgaag acacagacgg
      601 actacaccag caccgacccg gtcgtggcgc agatcgatca ggcacgcctg gccatcggca
      661 accgtgacaa tgaagacgcc acgagaatca tcgatcagat tctctcaggc ggctcgccgg
      721 aactgagcga ataggctcat atttccggca tctcgccgaa atttgaagcc tggagggtgg
      781 gtggcccctc cagcgctcta gccaaatcct ccgcccgctt ctagcatcgc ccgaaacagg
      841 ttagggcgtt atggacggcg tacattctgg cgtgatttct gataccgccc tgaccgtgcg
      901 gggattgtgc aaatccttcg gccgcaaggt ggtcgagaat ctggacctca ccatccgccc
      961 tggcgaattc tacgccttgc tcggccccaa tggcgccggc aagaccacca cattgcgcat
     1021 gatcgccggg ctgatgcgcc ccgatgccgg cggcattgag gtgttcgggc gcgacgtgct
     1081 ggccgacccg ctgggcgcca aatccatcat ggcctggatc cccgacgagc cgctgctcta
     1141 cgacaagctt tcgccgctgg aatatctgga attcattgcc ggcctctggc gcgtggaacc
     1201 cggcaccgcc cgcgcccgcg ccggcgagct gctggaaacg ctcgggctgt ggccgcaccg
     1261 gcatgagcgt tgcgaggggt tttcgcgcgg catgaagcag aaaaccgttc tcgccggcgc
     1321 gctcatccat gaacccaaat tcctgctcct cgacgagccg ctgaccgggc tcgatgccgc
     1381 ctcctcccgc ttggtgaagg agctgctgcg cgcggaaacc gagaagggcg cagctatcat
     1441 tcttaccacc catattctcg aagtggctga gcgcctggct acgcgcatcg gcattctctc
     1501 gggcggcgcg ttgctggcgg agggcgatct cgatacgctg aaggcgcagg ccggtctcac
     1561 ccatggttcg ctggaggatg tgttcctcca tctcacggcc gtttgcagct gatgttcacc
     1621 gctccgggtt ttccctggct gctgcggcat gaattgcgcg tgctgtggcg cggctccatc
     1681 ctggtgcgca cgcaccgcca tgttatcgtt ccggtactgg tggtggcggt gctgtttcag
     1741 ggcgtcgcct tggctctggc gcggcaggtg gcggcgcatc ccgtggcgct gcccaccatg
     1801 ctgctggcgg ccaatatcaa catcgtcttc ttgtttgccc tcatgttctc gcgcgccatg
     1861 acctcgagca tcgacgtcat ctatggccgc ggcgatgccg atttcctgct cgcctcgccc
     1921 attccgcctg accgcgtgct ggcggtgcgc atgctgggcg tggcctgctc catcgccgcg
     1981 ccctggatgc tgctgggtgg cgtgctgggc aatgggctcg ccatatatgg gcaatattgg
     2041 gggctgtgcg tctatcctat gttctttgcc gaggcactgc tggtggcggc tgcggctttt
     2101 gcctttgtgg tggtactgct acgtttcatc agtccgcagg cgacgcgccg cgccggccat
     2161 acgctggcgc tcatcaccgg cgtcggtatt ttcgtcatcg gtcaggcgcc gcgcttcgtg
     2221 ccgcaacatg tggtggcaaa attctgggcc tcgctgctgc cgggtcccga tggcggcggg
     2281 cttgccttcc tgttcgcgcg cgggctgctc ggtgagccct tcgccctgtc cgcctcgctc
     2341 gccttcgctt tggcgggctt ctgcatcgtc tggttcttcc tcgccaaacc ttttgccgat
     2401 ggcgtcatca ccgccgccgc cagccgcccg cgcggccgcc ccgcggcgca gacgggtcag
     2461 ttccgcgcct cgcctttcgc cgccgccctg gccaaggatc tgcgcctgct cggccgcttc
     2521 cccggcattt tcacccagat catctaccgc tcgctcacgc tggtgccggt cgccttcata
     2581 ctcaccggga aattccacat ggaggccggc atgggggctg ccgtgccgct gattgtgttt
     2641 ctcgctggcc agctcgggct gtttttcatc tccgtgctcg ccggctgcga aaccattccc
     2701 gaactcattg cctcggcccc agttctggtc cgcacgcctg cccgcgccgc ggcggtggcc
     2761 tcggtctatt ccacgctctt catcatagcg gcgccgctac tcgccgtgct cgcccgcgcc
     2821 ccgcagctgc tgccctcgct ggccctcggc atcgccggcg tgctgctcag caacgtgctg
     2881 ctgggccaga gaatgcccat cccgctggtg cgcgccagct tcggaaagac cagcaccgga
     2941 accgttgtcg gcctcatcct tggcgtatcc gtcagtacca tatggtcgtt tgccacctgg
     3001 ctcatcgtcg ccccgaaccc gctggcctgg ctgacgcctg gcaactgagc cggggcttac
     3061 ggctaatgcc gcgcgagata agcggcaccc cccaacaggc agaacggcag caccagcccg
     3121 gccagcaccg ccgctggtgt gtgcagcacg gccagcgcgg ccaggatgga gaggcccgcc
     3181 accgccaaag tgcgcttatc gccgaataat gttttgatga atccctgcat cagaccagct
     3241 ccgctccctt gggtttcggt gtgtagaggc ggatgagcgc gagcccgccc gcgacataga
     3301 aggcgaacag cagcggcagc gcggcatcac ccagcggcca ggcatagccg agcgcttcca
     3361 gcacccagaa tgtgccgaag cccagcaccg cggcgcccac ggtgaatttg atgacatttt
     3421 caggcacgcg ggcgagcggc tgacgcagca gcgcgcctgc ggccccgacg gcggccagcg
     3481 ccgcaatggc ggcaccggcg gcggccagcg tgtggcccgt ctgcacgccg agcgccacc
//
LOCUS       DASQCV010000172         6348 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1196207, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000172 DASQCV010000000
VERSION     DASQCV010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6348
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1196207"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VEQ16_02585"
     CDS             <1..263
                     /locus_tag="VEQ16_02585"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HYP62744.1"
                     /translation="IATDLLKTLGTGIVTLVSTADDKAAIVVAVSDDLSAKHGAVDLV
                     RLAATAVGGQGGGGNKAVAQAGGPNGNQWKTALDAVRGALQA"
     gene            415..1707
                     /locus_tag="VEQ16_02590"
     CDS             415..1707
                     /locus_tag="VEQ16_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP62745.1"
                     /translation="MDDAAAPVRNSLTITAISKAARRRRVLTVALLVAAGCVNYFDRS
                     ALAVGNPLIRASLHLSFAQMGLLLAVFAWAYGLAQLPAGAFIGRFGPRRTLGAGMVLW
                     SAAQLAASFVTGLWQFLAARVALGLGESPMYIGGTRVCADWFALPERALPISLFNASS
                     ALAPALAPPLLTLLMLGFGWRGMFFAAGLAGLAVAWAWVAFYRAPQDAAIPAHDIKLI
                     EADNIPDPPQGGLLWLLRFPTTWAMFFGFFGIIYVSWLYVTWLPGYLESARHLSLARA
                     GLWSSVPLLAGFAGAVAAGFLARLLVRLGLSPGAACLAPVVGGMGLASLCTMAGALAV
                     HLGPAIALMSAGLFGANIASSCGWALAAIVAPNKAVATLEAVQNIGASMGGALAPLIT
                     GLVVQKTGSFTPAFLLAGCIALASAAIYGFGARRPAGT"
     gene            complement(1704..2534)
                     /locus_tag="VEQ16_02595"
     CDS             complement(1704..2534)
                     /locus_tag="VEQ16_02595"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYP62746.1"
                     /translation="MIAVTGANGFVGGIIAAGLADWGVLRLVRRPAGQGDLAWSFATP
                     ADVLAEELRAHEVTHLVHAAWDMQASRLGELEAGCVAGSLRLLEAVHAAGARMIFIST
                     ISAFAGARSAYGQAKLQVEEAVLASGGIVLRLGLVMGDGGMFGNLRASVAKAKIMPMI
                     GSGKAPQYLLAEETLVESVRRAIAGELDAADGPITLANPTPVPFRDMVRGLAREAGRG
                     VILVPVPWQFLYAGFRSAEALGLRLGYKSDSVISFIYQDPAPDFSVQARLGISPPAWG
                     "
     gene            complement(2545..4038)
                     /locus_tag="VEQ16_02600"
     CDS             complement(2545..4038)
                     /locus_tag="VEQ16_02600"
                     /inference="COORDINATES: protein motif:HMM:NF017050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC oxidoreductase"
                     /protein_id="HYP62747.1"
                     /translation="MEYVIGSGPAGMACAAALLARGRDVTMLDAGLTLEAGREALRTA
                     MAAQAPADWTDEQHAMRKMKLGQQMPEFKLTHGSDYPYRAAPDAPGLEIEVPGVAASY
                     ALGGLSNVWGAAMLPYRAADIEGWPVGIDTMAQAYRHVLSLVPMAGQADALEAAWPFH
                     VRPRADVPVSRQADVLLRRLEWLKLPGVTAGRARLAVRAPLCIACGECLNGCPRELIF
                     SARHRLATLCGAGMNYVPNVVVRGVQENGQGVVLHATTPEGWQRFSGERVFVAAGVYG
                     STGLMLRSLGLGHTEILDSQYFTLPLLGLGRQKGVMDEALHTLAQVFVEIEDAAVNAR
                     NVHLQLYGYSDVLEAMIAQKLGPLKGLRRLVLERALIVQGYLHSDSSGRLEAKLDGDV
                     MRVTPHRNPATRAALKRVVKKIRQMKLGARPLGMLLQETLPGRGYHSGGSFPMRLNPG
                     AGETDYLGRPFGRSRTHIVDASVFPTIPAATITLSVMANAWRIGFES"
     gene            complement(4038..5198)
                     /locus_tag="VEQ16_02605"
     CDS             complement(4038..5198)
                     /locus_tag="VEQ16_02605"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYP62748.1"
                     /translation="MSIVMPCLNEAETLARCITKARDFLARSGVAGEIVIGDNGSNDG
                     SQEIARGLGARVVDVPVRGYGAAIYGAVMAANGRYCIMGDSDDSYDFSNLMPFVEALR
                     GGAALVMGNRFEGGIRDGAMPWKNRYIGNPILSGVGRLLFRAPIRDFHCGIRGFTREA
                     FLRMDLRTTGMEFASEMVIKATLLKMDIREVPTTLDKDGRSRPPHLRPWRDGWRHLRF
                     MLLFSPNWLFLYPGVLLMGAGFALGSALMASPVSFGGLRLSVGTLIYCVTLIEVGFQG
                     LWFALLSRAYTVQEGLVPQSARMRLIDRLFSLEGGLLAGLALLAAGFALLFYAVSIWS
                     GARFGVLDVDQIARVCIASSLALSLGFEVMLSSLMLSTLKLNVRSLPGMQGG"
     gene            complement(5249..>6348)
                     /locus_tag="VEQ16_02610"
     CDS             complement(5249..>6348)
                     /locus_tag="VEQ16_02610"
                     /inference="COORDINATES: protein motif:HMM:NF021436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2142 domain-containing protein"
                     /protein_id="HYP62749.1"
                     /translation="PNTAVYFPTAYLPAALGTALALAFDASPLHCLLTARLVSAGAFL
                     LVGLAALAIAAYGEAVLVTVLLLPMTLFLAGTLNQDGLLIAMTCLAAACLTRATRGWR
                     IAGLVAFALVLGAKPPYILLMGVFTLPLFAPGFWRRFSDMAVAMLPVLCWAAAVALFF
                     EAPFIREPYFPGSLFTGDHQIALDTTNAGAQLHILLSRPQRFLALPYYSTINDAYTDY
                     IGLIGVFGRLTIILDPGFYGAWAFSLVFAALGLLLTRRGETVPPRTALINFLAVMGAI
                     AVTYWLIEITLYLTWTNVGWPNVMGSMGRYFIIFLPFLPFGIPHLQSLPRLRSVRFSL
                     PPLLLALPSLGMGVFDIGYIPQKLVLNYYLH"
BASE COUNT         1229 a         2302 c         1837 g          980 t
ORIGIN      
        1 ccatcgccac cgacctgctg aaaaccctcg gcaccggcat cgtcaccctc gtctccaccg
       61 ccgacgacaa ggccgccatc gtggtcgccg tctcagacga tctctccgcc aagcatggcg
      121 cggtcgacct cgtccgcctc gccgccaccg ccgtgggcgg ccagggcggc ggcggcaaca
      181 aggccgtggc ccaggccggc ggccccaacg gcaaccaatg gaaaaccgcc ctcgacgcgg
      241 tgcgcggggc tctgcaggcc taaactccca gggggctctg ccccctggac ggctatagtc
      301 atagcgcccc cggtgtgaat tccggctttc ggcacaacat aatcatctga gtcatgctca
      361 ttgccttcga aaacggagac gagatgatgc agaatcataa ccttgagctg ccccgtggat
      421 gacgcggcgg cgccggtacg taacagcctg accataacgg ccataagcaa agccgcgcgg
      481 cgccggcgcg ttctgacagt ggcgctgctg gtggcggcgg gctgcgtgaa ttatttcgac
      541 cgctcggcgc tcgccgtcgg caatcccctc atccgcgcct cgctgcatct ctccttcgcg
      601 caaatggggc tgctcctggc cgtcttcgcc tgggcctatg ggctggccca actcccggct
      661 ggcgcgttca tcggaaggtt cgggccgcgc cgcacgctgg gcgccggcat ggtgctatgg
      721 tcagcggccc agctcgccgc cagtttcgtc accgggctct ggcagtttct cgccgcgcgc
      781 gtggctctcg ggctggggga atcgcccatg tatatcggcg gcacccgcgt ctgtgccgac
      841 tggttcgcct tacccgagcg cgctctgccc atctccctct tcaacgcctc ctcggccctc
      901 gcccccgctc tggcgccgcc gctgctcacg ctgctgatgc tggggttcgg ctggcgcggc
      961 atgttcttcg ccgccgggct ggccgggctc gccgtggcct gggcctgggt cgccttctac
     1021 cgcgccccgc aggacgcggc gattcccgcc catgacatca agctcatcga ggccgacaac
     1081 atccccgatc cgccgcaggg cggcctgctc tggctgctgc gctttcccac cacctgggcc
     1141 atgttcttcg ggtttttcgg catcatctac gtgtcctggc tctatgtcac ctggctgccg
     1201 ggctatctgg aaagtgcccg gcatctctct ctggccaggg ccgggctatg gtcgtccgtg
     1261 ccgctgctgg cggggtttgc cggtgccgtg gcggcagggt ttctggcgcg cttgctcgta
     1321 cggctggggc tctcgccagg tgctgcctgc ctcgcccctg tggtgggcgg catgggcctc
     1381 gccagcctct gcaccatggc cggggccctg gcggtgcatc tcggcccagc catcgccctg
     1441 atgtcggcgg ggctattcgg cgcgaatatc gcgtccagct gcggctgggc gctggcagcc
     1501 atcgtcgcgc ccaacaaggc ggtggccacg ctggaagcgg tgcagaatat cggcgcctcc
     1561 atgggcggcg cgctggcgcc gctcatcacc gggctggtgg tgcagaaaac cggctccttc
     1621 accccggcct ttctgctggc cggctgcatc gccttagcca gcgcggcgat ttacgggttc
     1681 ggggcacggc gcccggccgg tacctaaccc caggcgggcg ggctaatccc cagccgtgcc
     1741 tgcacggaaa aatcaggcgc cggatcctgg tagatgaagc tgatcactga atcgctctta
     1801 tatcccagcc tcagccccaa agcctcagca ctgcggaacc cggcatagag aaactgccat
     1861 ggcacaggca ccagaatcac gccgcgcccc gcctcgcgcg ccagcccccg caccatgtcg
     1921 cgaaacggca cgggcgtggg gttggccagc gtaatgggtc cgtccgccgc atccagctcg
     1981 ccggcaatgg cgcggcgtac gctctccacc agcgtttcct cggccagcag atattgcggc
     2041 gccttgcccg agccgatcat cggcatgatt ttcgccttgg ccacgctcgc gcgcagattg
     2101 ccgaacatgc cgccatcgcc catcaccagc cctagccgca gcacgatgcc gcctgaagcg
     2161 agcaccgcct cctccacctg caatttcgcc tgcccatagg ccgagcgcgc cccggcaaac
     2221 gcgctgatgg tggagatgaa aatcattctt gcgcctgccg catgcacggc ttcgagcagg
     2281 cggagcgagc ccgcgacgca gccagcttcc aattccccca gccggcttgc ctgcatatcc
     2341 cacgccgcat gcaccagatg cgtcacctca tgggcgcgca attcctcggc cagcacatcg
     2401 gcgggcgtgg caaaactcca ggccagatcg ccctgccctg ccggccgccg caccagccgc
     2461 agcacacccc aatccgccag ccccgcggca atgatgccgc cgacaaagcc attcgctccc
     2521 gtcaccgcaa tcattttttg ctccctagct ctcaaagccg atgcgccagg cattggccat
     2581 cacgctcagc gttatcgtcg ctgccggaat ggtcggaaat accgaggcat ccacaatatg
     2641 cgtgcggctg cgcccgaacg gccggccgag ataatccgtc tcccccgcac ccggattgag
     2701 acgcatgggg aatgacccgc cggaatgata accgcgcccc ggcagtgtct cctgcagcag
     2761 catccccaat ggccgcgccc ccagtttcat ttgcctgatc ttcttcacca cgcgcttcag
     2821 cgccgcccgc gtcgccgggt tgcgatgcgg tgtcacgcgc atcacgtcac catcgagctt
     2881 cgcctccagc cggccggaac tgtcggaatg gagatagccc tgcacgatca gcgcccgctc
     2941 cagcaccagt ctgcgcaagc ccttcagcgg ccccagcttc tgcgcgatca tcgcctccag
     3001 cacatcggaa tagccgtaaa gctgcagatg cacattgcgc gcattcaccg ccgcatcctc
     3061 gatctcgacg aagacctgcg ccagcgtatg cagcgcctcg tccatcacac ccttctgccg
     3121 gccaagcccc agcagcggca gggtaaaata ttgcgaatcc agaatttccg tgtggccgag
     3181 cccgagcgag cgcagcatca gccccgtact gccataaacc cccgccgcca caaacacgcg
     3241 ctcgccggaa aatctctgcc agccttccgg cgttgtggca tgcagcacca cgccctgccc
     3301 gttctcctgc acgccgcgca ccaccacgtt gggaacataa ttcatccccg ctccgcagag
     3361 tgtcgccagc ctgtgccgcg cggaaaaaat cagctcccgc gggcagccat tcaaacattc
     3421 gccgcaggcg atacagagcg gcgcccttac cgccagccgc gcccgccccg ccgtcacgcc
     3481 tggcagcttc aaccactcca gccgccggag caaaacatcc gcctgccggc tcaccggcac
     3541 atccgcgcgc gggcgcacat ggaacggcca cgccgcctcc agcgcatcag cttgcccggc
     3601 catgggtacc aggctcagca catggcgata ggcctgcgcc atcgtgtcga tcccgaccgg
     3661 ccagccttcg atatccgccg cgcgataagg cagcatcgcc gccccccaca cattgctgag
     3721 cccgcccagc gcataggacg cggccacacc cggcacctcg atctccagcc ccggcgcatc
     3781 cggcgcggca cggtacgggt agtccgagcc atgggtcagc ttgaactcgg gcatctgctg
     3841 cccaagcttc atcttgcgca tggcatgctg ctcgtcggtc cagtccgccg gcgcctgcgc
     3901 cgccatggcg gtgcgcagcg cctcgcgccc tgcctccaat gtcagcccgg catcgagcat
     3961 cgtcacatca cgcccgcgcg cgagcagcgc cgcggcacag gccatgcccg ccgggccgga
     4021 gccaatcaca tattccatca gccgccctgc atacccggca ggctgcgcac attcagcttc
     4081 agcgtgctca gcatcaggct ggacagcatc acctcaaacc ccagcgaaag agccagcgag
     4141 gaggcgatac agacacgcgc gatctggtcc acatccagca ccccaaaccg cgcccccgac
     4201 cagatggaca ccgcatagaa cagcagcgcg aaccccgcag ccagcagcgc cagccccgcc
     4261 agcagcccgc cttccaggct gaaaagccgg tcgatgagcc gcatacgcgc gctttgcggc
     4321 accagcccct cctgcaccgt ataagcgcgc gagagcagcg cgaaccacaa accctggaac
     4381 ccgacctcga tcagcgtcac gcagtaaatc agcgtgccca ccgaaagccg caagcccccg
     4441 aaactcaccg ggctcgccat cagcgcgctg cccagcgcga accccgcgcc catcaacagc
     4501 acgccaggat agagaaacag ccagttgggc gaaaacagca gcatgaagcg caaatgccgc
     4561 cagccatcgc gccagggcct caggtggggg ggacgcgagc gcccatcctt gtccaaggtg
     4621 gtcggcacct cgcgaatatc catcttcagc agcgtcgcct tgatgaccat ttcggacgcg
     4681 aattccatcc ccgtggtgcg cagatccatg cgcaaaaaag cctcgcgggt aaaaccgcgt
     4741 atgccacaat ggaaatcgcg gatcggcgcg cggaatagca gccgccccac gccggagaga
     4801 atgggattgc cgatatagcg attcttccac ggcatcgccc catcccggat gccgccctcg
     4861 aagcggttgc ccatcaccaa agccgcgccg ccccgcagcg cttccacgaa tggcatcaga
     4921 ttggagaaat cgtaggaatc atcgctgtcg cccatgatgc aatagcgccc gttcgccgcc
     4981 atcaccgcgc cataaatggc cgcgccatag ccgcgcaccg gcacatccac cacccgcgcg
     5041 ccgagccccc gcgcgatctc ctgcgagcca tcgttcgagc cattatcgcc aatgacgatc
     5101 tcccccgcca cgccgctgcg ggccagaaaa tcccgcgcct tggtgatgca gcgcgccaat
     5161 gtctccgcct cgttcaggca gggcatgacg atactcaact cacaatccat caaaatctcc
     5221 gcgcagcctg gcaggcgcat ggtcgaggtt aatgcaggta gtaattcagc accagcttct
     5281 gcggaatata gccaatatca aatacgccca tgcccaggct gggcaatgcc agcagcaacg
     5341 gcggcaggga gaaacgcaca gaacgcagcc taggaagaga ttgcagatgc ggaatgccga
     5401 atgggaggaa gggcagaaag atgatgaaat agcgccccat cgaacccatg acattgggcc
     5461 aacccacatt cgtccaggtc agatataagg tgatttcgat cagccagtag gtgaccgcga
     5521 tcgcccccat caccgccagg aaattgatca gcgcggtgcg cggcggcacg gtttcgccac
     5581 gccgcgtgag cagcagaccc aaggccgcaa aaacgaggct gaaagcccag gcaccataaa
     5641 aacccgggtc gagtataatc gtcagacggc cgaacacgcc gatcaggccg atataatcgg
     5701 tataggcatc gttaatggtg ctgtaataag gcagtgccag gaaacgttgg ggacggctga
     5761 gcaaaatatg cagctgcgcg ccagcattgg tcgtatccag cgctatctgg tggtcgccag
     5821 taaataatga acctgggaaa tatggctctc ggataaacgg cgcttcaaag aagagcgcga
     5881 ccgccgcggc ccagcacaac accggcaaca ttgccaccgc catgtcggaa aaccgccgcc
     5941 agaagcccgg cgcgaagagc ggcagcgtaa agacgcccat cagcagaatg taaggcggct
     6001 tggccccaag cacgagcgca aacgccacca gcccggcaat acgccagccc cgcgtggcgc
     6061 gggtaaggca ggcagcggcg aggcatgtca tcgcgataag cagaccgtcc tgattcaagg
     6121 tgccggccag gaacaaggtc atcggcagca gcagcacggt gaccagcacg gcctcgccat
     6181 aggcggcgat cgccaatgcc gccagcccca ccagcaaaaa cgcaccggcc gaaaccaggc
     6241 gcgcggtaag gagacaatgc agcggcgagg catcgaacgc caacgctagg gcggtgccca
     6301 atgcggcagg caaataggcg gtgggaaaat atacggcggt gttcggca
//
LOCUS       DASQCV010000173         1670 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2191609, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000173 DASQCV010000000
VERSION     DASQCV010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2191609"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..318)
                     /locus_tag="VEQ16_02615"
     CDS             complement(<1..318)
                     /locus_tag="VEQ16_02615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62750.1"
                     /translation="MASRKLLFYALLAAATLGLSQFLAAWRAWRAAPGVEAGAHVLLL
                     GAGLLAVGLWLGFILYEVDRAAGRVHRRIMLYEWVLARRSAARRRGPRQVTDGGDAPP
                     STPQ"
     gene            complement(320..1489)
                     /locus_tag="VEQ16_02620"
     CDS             complement(320..1489)
                     /locus_tag="VEQ16_02620"
                     /inference="COORDINATES: protein motif:HMM:NF012263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HYP62751.1"
                     /translation="MEAVLANLREWFQDRKQHLDLFDETKTDKQDDPLYILGGLVWLS
                     WMVVIVSGVILMLWYIPTTTGAYRSIEHITYDIPFGWLVRGMHKYGADMLITCITLRI
                     YRMYFAGEYKKPGELSWMVLFASLVLGMISGITGYLLIWNQRAFWAAKVVLTVPTYYD
                     EIPVLGNLGLGRATAYIFLGGPAVGQATITRFYAIHFGISVVFVILAEVLFYRTRRRR
                     LSLSPFVILLVLAFLAYVSFERLTDMGRWANPNRTPLPILSDWYFLALYQLVKYMPPL
                     WAGIAPALLIGYGMAVPFMDRTKETRPLERPFFFVVGVLALLYFIAFTALIILNIAVI
                     SRDPPIILAVTVVLMVFAFIWEILHRRRKAAQAAQAAQAAPAARPAPPPRAPAAA"
BASE COUNT          330 a          545 c          552 g          243 t
ORIGIN      
        1 ctgcggagtc gacggcggcg catcgccgcc atcggtcacc tgccgagggc ctcggcgcct
       61 ggccgcgctg cgccgcgcca gcacccactc gtagagcatg atccggcggt gcacgcggcc
      121 ggccgcgcgg tccacctcgt acaagatgaa gcccaaccac agccccacgg cgagcagccc
      181 cgcgccgagg agcaacacgt gagcgcccgc ttccaccccc ggagcggcgc gccaggcgcg
      241 ccacgccgcg aggaactggc tgagccccag cgtcgccgct gccagcagag cgtagaagag
      301 aagcttccgc gacgccatgc tatgccgcgg ccggtgcgcg cgggggcggg gcaggacggg
      361 cggctggggc cgcctgcgcg gcctgcgccg cctgtgccgc cttgcggcgg cggtggagga
      421 tctcccagat gaaggcgaac accatgagca ccacggtcac cgcaagaatg atcggcggat
      481 cacgactgat gacggcgatg ttcaggatga tcagcgccgt gaaggcgatg aagtagagta
      541 gcgccagcac ccccaccacg aagaagaacg gccgctccaa cgggcgcgtc tccttggtcc
      601 gatccatgaa ggggacggcc atgccgtaac cgataagcag cgccggtgcg atgcccgccc
      661 acagcggcgg catgtacttg accaactgat agagcgccag gaaataccag tccgagagga
      721 tcggcagcgg cgtccggttg ggattggccc accgccccat gtccgtgagg cgctcaaagc
      781 tgacgtaggc gaggaaggcc agcaccagca ggatcacaaa cggcgaaagg gagagacggc
      841 ggcggcgcgt acggtagaag aggacttccg ccaggatgac gaacaccacc gagatcccaa
      901 agtggatcgc gtagaaccgc gtgatggtgg cctgtcccac cgccgggccg ccgagaaata
      961 tgtaggcggt cgcgcggccc agccccaggt tgcctaggac gggaatctcg tcgtagtagg
     1021 tcggcaccgt gagcacgacc ttggccgccc agaacgcccg ctggttccag atgagcaggt
     1081 atcccgtgat gccggagatc atgcccagga cgagggaggc gaacaggacc atccaggaca
     1141 gctctcccgg cttcttgtat tcgccggcga agtacatgcg gtagatgcgc agcgtgatgc
     1201 aggtgatgag catatccgcc ccgtacttgt gcattccgcg cacgagccag ccgaagggaa
     1261 tgtcataggt gatgtgctcg atcgaccggt aggcgcccgt ggtggtgggg atgtaccaca
     1321 gcatcaggat gacgcccgag acgatgacca ccatccagga cagccacacc agccccccca
     1381 ggatgtagag ggggtcgtcc tgcttgtcgg tctttgtctc gtcaaagagg tccagatgtt
     1441 gcttccgatc ctggaaccac tccctgaggt ttgccagcac ggcttccact gcgcgttccg
     1501 cctccctgga atatcgcctt ggagtcgtga ctaggaccta tgccgaatcc cgcggtgcgt
     1561 cgccttcgcg atctgcccgt gggtctgggc gaggttccca ggcgatgccg ccaagctccg
     1621 cccccaccac aacgatgtta tcgccgcgaa gctcaaattg gaaataccgg
//
LOCUS       DASQCV010000174         4406 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1362734, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000174 DASQCV010000000
VERSION     DASQCV010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4406
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1362734"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1043
                     /locus_tag="VEQ16_02625"
     CDS             <1..1043
                     /locus_tag="VEQ16_02625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="UGSC family (seleno)protein"
                     /protein_id="HYP62752.1"
                     /translation="TMEKIKEFLSYTDRDPNEVLGVVLPASRAVSIWAVAVNGVMAGC
                     KPEYMPVLVALAEAMADPEYGVEHSGNTPGAETLIVLNGPIIKDLKFNYEQGALRDGF
                     KPNTSVGRFWRLALRNIAGFLPHKTDKGSFGNTFRVVLAENEDALAKIGWPSNAADMG
                     FETGDNTVTVSRMTSGNVIVSVTGATPEEIMPYLADSVASCTRWEIIFTVGGITYGTL
                     RPALVLTPILAQTLARAGWSKDDVKQYLYKHARMTARRVETYTETWADFPIISLKHQV
                     NLGKLPKDFAESDDPKRMVPIVLDPDDFMVLVSGDPLRTNAYTFAHNGYLGFPTAKKI
                     VLPADWAERLKK"
     gene            complement(1049..1141)
                     /locus_tag="VEQ16_02630"
     tRNA            complement(1049..1141)
                     /locus_tag="VEQ16_02630"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1105..1107),aa:Sec,seq:tca)
     gene            1224..1985
                     /locus_tag="VEQ16_02635"
     CDS             1224..1985
                     /locus_tag="VEQ16_02635"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP62753.1"
                     /translation="MGKSLAGRVALVTGASSGIGEAAAIALAEAGADVAISARRADRL
                     AALSKKLEALGAKVLALPGDVVDEKVATETVEKTIAHFGKLDILVNSAGIMHMGTVEA
                     TDLAEYRRVMDVNLMGTVYTCKAAIAPMKAQGHGDIVNISSQAGRKTGPMVGAYAASK
                     HALNAMSDSLRQEVGGHGIRVCVLMPGATTTEVADSLTDPNFRAAIKSHVTKDGAVAA
                     SEIADAIVFVVSLPQRVNIDLISVRPTIDTSDTSA"
     gene            complement(2035..4242)
                     /locus_tag="VEQ16_02640"
     CDS             complement(2035..4242)
                     /locus_tag="VEQ16_02640"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HYP62754.1"
                     /translation="MLLSLPKDSQPVHEMFERFFATESSTARVRAAEPVGFDPALWRE
                     LVTLDAPFMRLSEEAGGSGMSLFDATVMMEQAGRRLAAAPLAESMVALRILGEVGGEA
                     AREWIEKVRDGETVLTLALKPVTDGKTQLVPGGAVAKAVLVLDGDQLAIELPGKPLEA
                     PSSLGGNALGEFTPGQGTRIPLPTNADATSIFEAGIEEWKLLTAAALGGLADEAVKMA
                     SAYATEREAFGQPIGTYQAISHPLANDIIDVDGVKMLLWRALRDVADGAPNAAAAISQ
                     SFWWAAKTATQSVAHALHTFGGYGLTNEYDIQLYHRRAKSWAQALGNPDAELVRAGRR
                     LFHGETAHLPDPGLVEVSFEPPDAGHELAAETRAVFDAVIDPVRHQLHDHCFEAFSWD
                     VHHALGKAGLIFPHWPEKWGGRGADADSTRASYAVWNEVGWAGLPRGTTGLGGNMIIK
                     FGSKELQDEVLLRMGRGEVTSCLGYTEPSGGSDVFAAKTRAVRDGDDWIVNGQKMFTS
                     GAEWASYVLLLTRTNPDVPKHKGLTMFLVPLDLPGIEIHPVHTFMDERTNATFYQDVR
                     VPDRYRIGDIDGGVKCMASALSEEQGGAYYHYQLYDMINAIRDWAADEERDGMNFLSH
                     PGTLATLARVHASARISEGLNARALWTKIAGEPDLAYGPASKIFSTQAFIDHSAELLD
                     LASPGTLLRGKEGLSVIEKGYRHSTATSIYGGSSEVLRSMIAERRLGMPRSRG"
BASE COUNT          763 a         1284 c         1548 g          811 t
ORIGIN      
        1 cgacaatgga gaagatcaag gagttcctct cttatacgga ccgcgatccc aacgaggtgc
       61 tgggtgtggt gctgccggcg agccgcgcgg tgagcatctg ggccgtggcg gtgaatgggg
      121 tgatggcggg gtgcaagccg gaatatatgc cggtgctggt ggcgctcgcc gaagcgatgg
      181 ccgatcctga atatggtgtg gagcatagcg gcaatacgcc gggcgcggaa acgctcatcg
      241 tgttgaatgg tcccatcatc aaggacctga aattcaacta cgagcagggc gcgctgcgcg
      301 acgggttcaa gcccaacacg tctgtgggac gcttctggcg cctggccttg cgcaacatcg
      361 cgggcttcct gccgcacaag accgacaagg gctcgtttgg caacacgttc cgcgtggtgc
      421 tggccgagaa tgaggatgcg ctggcgaaga ttggatggcc gtcgaatgct gccgatatgg
      481 gattcgagac cggagacaat accgtcaccg tctcgcgtat gaccagcggc aatgtcatcg
      541 tgtccgtcac cggcgccact ccggaggaga tcatgcccta tctggcggac tctgtcgcct
      601 cctgcacgag atgggaaatc atttttacgg tgggcggcat cacctatggt acgttgcggc
      661 cggcactcgt gctcacgccg atcctcgcgc aaaccctggc gcgggccggg tggagcaagg
      721 atgatgtgaa gcaatatctg tataagcatg cccgcatgac ggcgcggcgc gtggagactt
      781 acacggaaac atgggcggat ttcccgatca tctcgctcaa gcaccaggtg aatctcggca
      841 agctgccgaa ggattttgcg gaatcagacg atcccaagcg catggtgccc atcgtgctcg
      901 acccggatga tttcatggtg ctggtgtcgg gcgatccgct gcggaccaac gcctatacct
      961 tcgcgcataa cggctatctc ggctttccca cggccaagaa aatcgtgctg ccggcggatt
     1021 gggcggagcg tttgaagaag tgaggcggtg gcggaagcgg atgggaatcg aacccaccgc
     1081 ccgctattcg cgggccattg gttttgaaga ccaaggaagc caccagactt caatcgcttc
     1141 cgcaagagat gtcgcgcgtc ccccttcata gaggatgacg ggggaggtgg cgagagtgtt
     1201 tacttaagtc aaggagcaga aatatgggga agagtttggc cggacgtgtg gccctggtga
     1261 ccggcgcatc ctccggcatt ggcgaggcag ccgccatcgc cctggccgag gccggggcgg
     1321 atgtggccat ctccgcgcgc cgcgccgacc ggttggcggc tctgtccaaa aaacttgagg
     1381 ccctgggcgc gaaagtgctg gcgctgccgg gcgatgtggt ggacgaaaaa gtggcgaccg
     1441 aaacggtgga aaaaaccatc gcccatttcg gcaagcttga tatcctcgtc aattccgctg
     1501 gcatcatgca tatgggcacc gtggaggcca cagaccttgc cgaatatcgc cgcgtgatgg
     1561 acgtgaacct gatgggcacg gtctatacct gcaaggccgc catcgcgccg atgaaggcgc
     1621 aaggccatgg cgatatcgtc aacatctcct cccaggccgg tcgtaagact gggcccatgg
     1681 tcggcgccta cgccgccagc aagcacgcgc tcaacgccat gtccgactcg ctccgtcagg
     1741 aagtgggcgg gcatggcatc cgcgtctgcg tgctcatgcc gggcgccacc accaccgaag
     1801 tggccgacag cctcaccgac cccaacttcc gcgccgccat caaatcacat gtcactaaag
     1861 acggcgccgt cgccgccagc gaaatcgccg acgccatcgt cttcgtcgtc tcgctgcccc
     1921 agcgcgtcaa tatcgacctg atctccgtgc ggcctaccat cgatacgtcc gatacgtccg
     1981 cgtagtcggg ggtgagatga gaaaggccag gggctctgcc ccgggccttt cttatcaccc
     2041 ccggcttcgc ggcatgccga gacggcgttc ggcgatcatg ctgcgcagga cttccgagga
     2101 gccgccgtag atggaggtgg cggtggagtg gcggtagcct ttttcgatga cggagaggcc
     2161 ttctttgccg cggaggaggg tgccggggga ggcgaggtcg agcagttcgg cggagtggtc
     2221 gatgaaggcc tgggtcgaga agattttgga ggcggggcca taggcgaggt ctggttcgcc
     2281 ggcgattttg gtccagaggg cgcgggcgtt gaggccttcg ctgatgcgcg cggaggcgtg
     2341 cacgcgggcg agggtggcga gggtgccggg gtgggagagg aagttcatgc cgtcgcgttc
     2401 ttcgtcggcg gcccagtcgc ggatggcgtt gatcatgtcg tagagctggt aatggtaata
     2461 ggcgccgcct tgttcttccg agagggcaga ggccatgcat ttcacgccgc catcgatgtc
     2521 gccgatgcgg tagcggtccg gcacgcggac atcctggtaa aaggtggcgt tggtgcgctc
     2581 atccatgaag gtatggacgg ggtggatttc gatgcccggc agatcgagcg gcaccaggaa
     2641 catggtgagg cctttatgct tgggcacgtc cgggttggtg cgggtgagga gcagcacgta
     2701 gctggcccat tccgcaccgg aggtgaacat tttttggccg ttgacgatcc agtcatcgcc
     2761 gtcgcgcacg gcgcgggttt tggcggcgaa tacgtcggag ccgccggagg gttcggtata
     2821 gccgaggcag gaggtgactt cgccgcgtcc catgcgcagc agcacttcat cctgcagttc
     2881 cttgctgccg aatttgatga tcatgttgcc gccgaggccg gtggtgccgc gcggcaggcc
     2941 ggcccagccg acttcgttcc acacggcgta gctggcgcgg gtggaatcgg catcggcgcc
     3001 gcgcccgccc catttttcag gccagtgcgg gaagatgagc ccggctttgc cgagagcatg
     3061 gtgcacgtcc cagctgaagg cttcgaagca atggtcatgc agctggtggc ggacggggtc
     3121 gatcacggcg tcgaacacgg cgcgggtttc cgctgccagt tcgtggccag catcgggcgg
     3181 ctcaaaactc acttccacga ggccggggtc gggcagatgc gcggtctcgc catggaacag
     3241 gcggcggccg gcgcggacca gctcggcatc cggattgccc agcgcctggg cccagctttt
     3301 ggcgcggcga tgatagagct ggatgtcgta ttcattggtg aggccgtagc cgccgaatgt
     3361 gtgcagcgca tgcgcgacgg attgcgtggc ggttttggcg gcccaccaga agctttgcga
     3421 gatggcggcg gcggcattag gcgcgccgtc cgccacgtcg cgcagggcgc gccagagcag
     3481 cattttcacg ccgtcgacat cgatgatgtc gttggcgagc ggatgggaga tggcctggta
     3541 ggtgccgatg ggctggccga aggcttcgcg ctcggtggcg taggcagagg ccattttcac
     3601 cgcctcgtcg gcgagcccgc cgagggcggc ggcggtgagg agtttccatt cctcgatgcc
     3661 ggcttcgaag atggaagtgg cgtcggcgtt ggtgggcagc gggatgcgcg tgccctggcc
     3721 gggggtgaat tcgcccagcg cattgccgcc gaggctggag ggggcttcca acggtttacc
     3781 gggcagctcg atggcaagct ggtcgccatc cagcaccagc acggctttgg ccacggcgcc
     3841 gccggggacg agctgggttt tgccgtcggt gacgggcttc agggcgaggg tgagcacggt
     3901 ttcgccatcg cggactttct cgatccattc ccgcgcggcc tcaccgccca cttcgccgag
     3961 aatgcgcagc gccaccatcg attccgcgag cggggcggcg gcgaggcggc ggccggcctg
     4021 ttccatcatc accgtggcgt cgaacaggct catgccgctg ccgccggctt cctcagagag
     4081 ccgcatgaag ggcgcgtcga gcgtcaccag ctcgcgccag agcgcggggt caaaccccac
     4141 gggctcggcg gcgcggacac gggcggtgct ggattccgtg gcgaagaaac gctcgaacat
     4201 ctcgtgcacg ggttggctgt cttttggcag gctcagcagc atgggacggt ccctcttcgg
     4261 cggccatatg cccgtgaggg gcggcctttg tttccattgg gaccaattat gcgccggtac
     4321 gggccgggag ccagggatgg ggcaacttat cgcgccggcg attggcgccc cttctggcgt
     4381 caggggatta gaacttcgcc tccccg
//
LOCUS       DASQCV010000175         4422 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_36412, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000175 DASQCV010000000
VERSION     DASQCV010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4422
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36412"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VEQ16_02645"
     CDS             complement(<1..266)
                     /locus_tag="VEQ16_02645"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HYP62755.1"
                     /translation="MSDQQVDVVIIGGSHGGSEAAFRLRQGGFAGSIALISAEAYLPY
                     HRPPLSKAFLAGEVTVESLLLRGQAFYEKANIIWRPSTTVTHIDR"
     gene            complement(381..689)
                     /locus_tag="VEQ16_02650"
     CDS             complement(381..689)
                     /locus_tag="VEQ16_02650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62756.1"
                     /translation="MSYFSAVMVVLGIELLALLALLGERHFAMYDRIPVRWSKAGGPS
                     LYITRRVGLTFFPVVGTLLLLLLALAHQPVYILAITQLGLAAANILYFRAVGRTMEET
                     "
     gene            complement(780..1484)
                     /locus_tag="VEQ16_02655"
     CDS             complement(780..1484)
                     /locus_tag="VEQ16_02655"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HYP62757.1"
                     /translation="MQVAELMNRNTLSVMPSSLVSDAARIMVAHRISGLPVLDEQGKL
                     VGIVTEGDLLRRAEIGTDGAQAGWLKSLLMPSAVAADYVQTHARHVSGVMTHNPVFVT
                     PETGIDEAAQLMFRKQIKRLPVLDHGKLVGVISRSDLVRILARKLINTPAESSDESIA
                     NYIKAEISHANWAPKSGLRIAVKDHVVEVKGTVFSDEERQAVICIAENAPGVKEVKDN
                     LVFVDPGSGLAFPAGG"
     gene            complement(1609..2379)
                     /locus_tag="VEQ16_02660"
     CDS             complement(1609..2379)
                     /locus_tag="VEQ16_02660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYP62758.1"
                     /translation="MTMLNKLPDIRRPVTIGLTPRPTATHCDDCGARHVGLCEVLSDE
                     ELAGLSRFAQHITLPAGSVFIEEGEPANFVYNVNSGFIRLFKSLPDGRRHIIGFAGPG
                     YFLGLAGSANIVSAETMEPVRLCRFTRAAMAQIFAEFPQLERKLLEVTIHELVLGQQQ
                     MLLLGRKTAMERIASFLLSWAAREALCAEGRLPRPGARLKLPISRTDLADHLGLTIET
                     VSRSLSTLKRDGLIGIPNMREILLLRPQALSDIAEAAS"
     gene            complement(2425..3315)
                     /locus_tag="VEQ16_02665"
     CDS             complement(2425..3315)
                     /locus_tag="VEQ16_02665"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HYP62759.1"
                     /translation="MRGWLERAGTGGWWRGPDGVRMWWRVLLFVLLVAVFFAACARLM
                     PRTLVRALVAEGQMGPGFIVVNELLVLVPVMAATSVMTWLEAGPFISCGLGGERRLVR
                     LVQGAGCGLLIMGLLVLLLAAAGHGSLAWGGLRAGGVISFGLAWAAASLLIGFNEELA
                     LRGYLLQALWRGIGFWPALVITSLVFGTLHISNQGEGAIGVATAVLGGAIMALGVRGT
                     GALWWSIGLHGAWDYVENFLAGTPDSGETCLGTLLRFTPHGPEILSGGATGPEGSIFA
                     LVLLVPALALSWRAFARAPV"
     gene            complement(3393..>4422)
                     /locus_tag="VEQ16_02670"
     CDS             complement(3393..>4422)
                     /locus_tag="VEQ16_02670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP62760.1"
                     /translation="LADIYGRKPILITVILLYSFFEALTGFAWSFTSFLVIRTLFGIA
                     MGGEWGIGSSLAMESIPARWRGWVSGLLQAGYPAGFLLATLLFDFGDSTLGWRGMFFF
                     GATPALLTIFIATTVKESPAYEALHKGPKVSIGEVLAKNAKLAIYGVCMMAAFNFFSH
                     GTQDLYLKAHLGKQLHFPHNEIANAGLIFNVGAILGGIAFGLLSQKIGRRYAIILACL
                     LSLIVLYPWAHSTSYMTVVISAFVMQVAVQGAWGVVPVHLNELSPAEIRGTFPGFIYQ
                     LGNFIASINAPMQAAIAANHGGDYGYALMLTAGSVAIILILLMAFGPEARNVSMVART
                     VAEPGVAD"
BASE COUNT          945 a         1369 c         1387 g          721 t
ORIGIN      
        1 cggtcgatat gggtgaccgt cgtggagggg cgccagatga tgttggcctt ctcataaaag
       61 gcctggccgc gcagcagcag ggactcaacc gttacctcgc cggcgagaaa ggctttcgag
      121 aggggcgggc gatgataggg cagataagcc tccgccgaga tcagcgcgat gctgcccgcg
      181 aaaccgccct ggcgcaggcg gaatgccgcc tcgctgccac catggctgcc gccaatgatc
      241 accacgtcta cttgctggtc actcatcgaa gtttgtctcc tggatcttac ccgctcctac
      301 gcagagcctc gggcgcaggc aagcgcctaa gccctgtttt tttggcggtt tgcctagatg
      361 ggcaggtgat tatgaagaat ttaggtctct tccatcgtcc ggccgacggc acggaaatag
      421 agtatattgg cggccgcaag tccaagctgg gtgatggcga ggatatagac gggctgatgc
      481 gccaaggcga gcagcagaag cagcagcgtg cccacgacgg gaaagaatgt cagacccacc
      541 cggcgggtaa tataaaggct gggccccccc gctttgctcc aacgcacggg aatgcggtca
      601 tacatggcaa aatgccgttc gcccagcaaa gcgagcagag ccagaagctc gatcccgagc
      661 accaccatca cggcagaaaa atagctcatt tctcgctcac ttccctgtat gttcccgccc
      721 ttattcccgc accatgtttc ccgagccatg tttcccaaca gtgtttcctg cgtttgccgt
      781 tacccgcctg cgggaaacgc caaacctgag ccggggtcaa cgaagacgag attatccttt
      841 acttccttaa cgcccggtgc gttttccgca atacaaatta cggcctggcg ctcctcgtca
      901 gagaacaccg tccccttcac ctccaccaca tggtccttca cggcaatgcg caggccggat
      961 ttgggcgccc agttggcatg gctgatctct gccttgatgt agttggcgat ggactcatcc
     1021 gagctttccg ccggcgtgtt gatcagcttg cgggcaagga tgcgcaccaa gtcgctgcgg
     1081 ctgatgacgc caaccagctt gccatggtcg agcacaggca ggcgcttgat ctgcttgcgg
     1141 aacatcaatt gcgccgcctc gtcgatgccg gtttccggcg tgacgaagac agggttgtgc
     1201 gtcatcacgc ctgaaacatg ccgggcatgg gtctgcacat aatcggccgc cacggcggaa
     1261 ggcatcagca gcgatttgag ccatccggcc tgggcaccat cggtgccgat ctcggcccgg
     1321 cgcagcagat ccccctcggt gacgatgccg accagcttgc cctgctcatc gagcacgggc
     1381 aggccgctga tgcggtgcgc caccatgatg cgcgcggcgt cggacaccag gctggatggc
     1441 atgacggaaa gcgtgttgcg gttcataagc tcggcgactt gcatgttggt ctcctctcga
     1501 accaaatata tatggacgcg aaaaccggtt gcgcatccaa gcttatgttt aggaggacac
     1561 cgtgagagct tctttgacga aggtcaaagc aatcctgcgt gagtgctatt aagaagcagc
     1621 ctcggcaata tccgaaagcg cctgaggacg cagcagcagg atttcacgca tattgggaat
     1681 gccgatgagc ccatcgcgct tgagggtgga gagagagcgc gagacggtct cgatcgtcag
     1741 gccgagatga tcggccaagt ctgtgcgcga gatcggcagc ttcaggcgcg cgccggggcg
     1801 gggtagccgg ccctcggcgc acagcgcctc acgcgccgcc caggagagca ggaagctggc
     1861 gatgcgctcc atggctgtct tgcgccccag cagcagcatc tgttgctggc cgagcaccag
     1921 ctcatgtatc gtcacctcca gcagcttgcg ctcgagctgg ggaaattcgg cgaaaatctg
     1981 cgccatggcg gcgcgggtga aacggcagag gcgtaccggc tccatggttt cagccgagac
     2041 gatattggcg ctgccggcta agcccagaaa ataccccggc ccggcgaaac cgatgatatg
     2101 gcggcgcccg tcgggcagcg atttgaacag gcggatgaag ccggaattga cgttatagac
     2161 gaaattggct ggctcgccct cctcaatgaa cactgaaccc gccggcaggg tgatatgctg
     2221 agcgaaacgc gagaggccgg ccagctcttc gtccgaaagc acttcgcaca agccgacatg
     2281 acgggcgccg cagtcatcgc aatgcgtggc agtggggcga ggcgtcagcc cgattgttac
     2341 agggcggcgt atgtccggga gcttattcaa catcgtcatg gctgatgagt ttagccaatc
     2401 cgctgggggc tgatttgatc cagatcaaac gggtgcgcgg gcaaatgcac gccagctgag
     2461 cgccaaagcg gggacaagca ggaccagggc aaaaatacta ccctcggggc cggtggcgcc
     2521 gccggacaaa atctccggcc cgtgcggggt gaagcgcagc agcgtgccga ggcaggtctc
     2581 gccgctatcc ggcgtgccag ctaggaaatt ttccacataa tcccaggcgc catgcaggcc
     2641 gatggaccac cagagcgcgc ccgtgccgcg cacgcccagc gccatgatgg caccacccag
     2701 cacggcggtg gcaacgccga tggcgccctc gccctggttg gaaatatgca gcgtgccaaa
     2761 taccaggctg gtaatgacca gcgccggcca gaagccgatg ccgcgccaca atgcctgcag
     2821 cagatagccg cgcagagcca attcctcgtt aaagccgata agcaggctgg ccgccgccca
     2881 ggccagcccg aacgagatga cgccccctgc cctgagccca ccccaggcca ggctgccatg
     2941 gcccgccgcc gccagcagca gcaccagcag ccccataatc agcagcccgc acccggcgcc
     3001 ctggaccagc cgaaccaaac ggcgctcccc gcccagcccg catgaaataa aaggccccgc
     3061 ctcaagccag gtcatcaccg aagtcgccgc cataaccggc accagcacca gcagctcatt
     3121 caccacaatg aagccgggcc ccatctgccc ctcggcaacc aaggcccgca ccagcgtgcg
     3181 cggcatcaaa cgcgcgcaag ccgcaaaaaa caccgcgacc agcagcacaa acaaaagcac
     3241 gcgccaccac atgcgcaccc cgtccggccc tcgccaccag ccgcctgtcc ctgcccgttc
     3301 cagccaaccc cgcatgcgtt cctgatagca tgcacggtgg ctgagcccag catctcgggg
     3361 tgactcgcag ggggcgcgca gccccctggg ggttaatccg cgacgccagg ctcagccacc
     3421 gtgcgtgcga ccatggagac attgcgggct tcggggccga aggccatgag caggatgagg
     3481 atgatggcga cggagccggc ggtgagcatc agggcgtagc cgtaatcgcc gccatggttg
     3541 gcggcgatgg ccgcctgcat gggggcgttg atcgaggcga tgaaattgcc gagctggtag
     3601 atgaaacccg ggaaagtgcc gcggatttcg gctggcgaga gttcgttgag atgcaccggt
     3661 accacgcccc aggcgccctg caccgccacc tgcatgacga aggcggagat gacgaccgtc
     3721 atgtagctcg tgctgtgcgc ccagggatag agcacgatca gcgacagcag gcaggccagg
     3781 atgatggcat agcggcggcc gattttctgg ctcagcaggc caaaggcgat gcctccgagg
     3841 atggcgccga cattgaagat gagaccggca ttggcgattt cgttatgcgg gaaatgcagc
     3901 tgcttgccga gatgggcctt gaggtaaagg tcctgcgtgc cgtgcgagaa gaaattgaag
     3961 gccgccatca tgcagacgcc atagatggca agcttggcat tcttggccag cacctcgccg
     4021 atggagactt tcggcccctt atgcagcgcc tcgtaagccg ggctctcctt gacggtggtg
     4081 gcgatgaaga tggtgagtag cgccggggtg gcgccgaaga agaacatgcc gcgccagccc
     4141 agggtggaat caccgaaatc gaacaaaagc gtggcgagca ggaagccggc cggatagccc
     4201 gcctgcagca ggccggaaac ccagccgcgc cagcgtgcgg ggatggattc catggcgagt
     4261 gacgagccga taccccattc gccgcccatg gcgatgccga acaaggtgcg gatgaccagg
     4321 aaggaggtga aggaccaggc gaagccggtg agcgcctcaa agaaggagta aagcaggatg
     4381 acggtgatca ggatcggttt gcggccgtaa atgtcggcaa gg
//
LOCUS       DASQCV010000176         1627 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2689040, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000176 DASQCV010000000
VERSION     DASQCV010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1627
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2689040"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..916)
                     /locus_tag="VEQ16_02675"
     CDS             complement(<1..916)
                     /locus_tag="VEQ16_02675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012973125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HYP62761.1"
                     /translation="MQTNFSAAQLADPALNKAEKILRACVHCGFCTATCPTYVLLGDE
                     LDSPRGRIYLIKDMLETGKPATEQVVKHIDRCLSCLSCMTACPSGVDYMHLVDHARVH
                     IERTYKRPLRDRLVRRLLALVLPRPALFRAAVAAAKLGRPFAPLLPRSIRTMLALAPA
                     SLPATLPDTALNARPTASAPHLRVALLPGCTQKVLAPHINLATTRLLARHGCEVVVLP
                     GTGCCGALRHHMGADDHAEARANILAWRAEVEAGRLDAIVINASGCGTMVKDYGFIFR
                     NDRDLAAAAAAISRLARDVTEVLAEIGLH"
     gene            complement(922..>1627)
                     /locus_tag="VEQ16_02680"
     CDS             complement(922..>1627)
                     /locus_tag="VEQ16_02680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="2-hydroxy-acid oxidase"
                     /protein_id="HYP62762.1"
                     /translation="TEITVKVLPRPETECTLLLRAHEAETSVAWMSAALNTPHEVSAA
                     AYLPAKLVVRSFAAGMQPADSGVVALRLEGPAPSVAHRADALDDIFGGAPRLAMTDSA
                     AFWGDVGAVSPLLGVTEIVWRLNPPPAAAGAVLDRLEVTLGAQAAFLDWGGGQIWIGL
                     PRVQAGADAGASKLRAALAGSGGHATLFAAPDECRAGAEVFQPLPPALAALTRRVKQG
                     FDPLGILNPGRMYREI"
BASE COUNT          313 a          541 c          526 g          247 t
ORIGIN      
        1 tatgcaggcc aatttcggcc agcacttcag tgacatcccg tgcgagccgg gaaatggcgg
       61 cagcggcggc ggcgagatcc ctgtcattgc gaaagatgaa gccataatcc ttcaccatgg
      121 tgccgcaacc agaagcgttg atgacaatgg catccaaccg cccagcttcg acctctgccc
      181 gccaggccag gatgttggca cgcgcttcgg catggtcatc tgcccccata tggtggcgca
      241 gcgcgccgca gcagcccgtg ccgggcagca ccaccacctc gcacccgtgc cgcgccagca
      301 ggcgcgtggt ggcgaggttg atatgcggcg ccaacacctt ctgcgtgcag ccaggcagca
      361 acgccacgcg caggtgcggt gcggaagctg tcggcctcgc gttcagcgcc gtatcgggca
      421 aagtggcggg taagctggcc ggtgcaagcg caagcatggt gcggatgctc ctgggcaata
      481 gcggcgcgaa aggcctgccc aatttcgcgg cggccaccgc tgcccggaac agcgccggcc
      541 ggggcagcac cagggccagc aggcggcgga ccagcctgtc cctgagcggg cgcttataag
      601 tccgctcgat atggacacgg gcgtgatcga ccagatgcat atagtccacg cccgaggggc
      661 aggcggtcat gcaactcagg caagagaggc agcgatcgat atgcttcacc acttgctctg
      721 tggcgggctt gccggtctcc agcatgtcct tgatcaaata gatccgcccg cgcgggctat
      781 ccagctcgtc acccagcagg acataggtcg ggcaggtcgc cgtgcagaag ccgcaatgaa
      841 cgcaggcacg caggattttc tcggccttgt tcagtgccgg gtcggcaagc tgcgcggcgg
      901 agaaattcgt ttgcatggcg gtcagatctc ccggtacatc cggcctgggt tgaggatacc
      961 gagcgggtcg aagccttgct tgacccgccg cgtgagcgcg gcgagcgcgg ggggcaacgg
     1021 ttggaacacc tcggcaccag cgcggcactc gtcaggcgca gcgaacaggg tggcatggcc
     1081 gccagagcca gccagcgcgg cacgtagctt tgacgcaccg gcatccgccc cagcctggac
     1141 acgcggcaag ccaatccata tctgaccacc gccccaatcc agaaatgcgg cttgggcacc
     1201 aagcgtcact tccagcctgt cgagcaccgc ccccgccgca gcagggggag gattaaggcg
     1261 ccagacaatc tccgtaacgc ccaataatgg cgacaccgcg ccaacatccc cccagaaggc
     1321 agcactgtcc gtcatggcga ggcgcggcgc gccgccgaag atatcatcaa gcgcatccgc
     1381 acggtgcgcc acggagggtg ccgggccttc cagccgtagc gccaccacgc cgctatcggc
     1441 gggctgcatg ccagcggcaa aactgcgtac cactaacttg gcgggaagat aggctgcggc
     1501 gctcacctca tgcggggtgt tcagcgccgc actcatccac gccacggatg tctcggcctc
     1561 atgggcgcgc agcagcaacg tgcattcagt ttcagggcgc ggcagcactt tcacggtgat
     1621 ctcggtc
//
LOCUS       DASQCV010000177         7153 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_534297, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000177 DASQCV010000000
VERSION     DASQCV010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 7153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7153
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_534297"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..425
                     /locus_tag="VEQ16_02685"
     CDS             <1..425
                     /locus_tag="VEQ16_02685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP62763.1"
                     /translation="LLMGAQVVKYADYGKTLEMVLELFPRLKERFSQRGGTLSGGEQQ
                     MLAIARALMSKPKLLLLDEPSLGLAPLVIKQIFGAIRQLNRETGLTVLLVEQNANQAL
                     KLAHRGYVLVNGAITLTGGGLELLAKPEIRAAYLEGGH"
     gene            496..1602
                     /locus_tag="VEQ16_02690"
     CDS             496..1602
                     /locus_tag="VEQ16_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HYP62764.1"
                     /translation="MRKILLATAAFVSLGGGLAYAQTKIGVAGPLTGSNAAFGTQLMT
                     GATQAVADINAAGGVLGKQLTLVSADDACDPKQAVTAANTLVTDGVVMVDGHFCSSSS
                     IPASAVYTDAGVVQITPASTNPKYTDEGTAFTFRTCGRDDQQGKVAAKYIAKHFPKAK
                     IAVLDDNSTYGKGIADQVRANLGKLGVAVVYNASFTAGDKDYTALVSRLKQQGITLVY
                     LGGYYADTGLIVRQSAAQGFTPQFFSEDASATQDFWTTAGNAAEGTLLTFPPPAEKDP
                     HAEKVVAELTAAKKDPTGYVLYSYAAIQAWAEAAKKAGTTDGAKVAAELKSGGPWPTV
                     LGPVEFNGKGDVVNAAYAVYKFHDGNYTVFALKP"
     gene            complement(1701..2834)
                     /locus_tag="VEQ16_02695"
     CDS             complement(1701..2834)
                     /locus_tag="VEQ16_02695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019463119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP62765.1"
                     /translation="MSVQIYPRIAGIGQAAWNACASGGNPFVSYGFLSALEDSGAVGA
                     DTGWYPRYAALVDDAGEVAAVTPAYVKTHSYGEYVFDHSWANALERAGGRYYPKLQIA
                     APFSPVPGPRLLRRPGVSVAAMAEALVALTEELGCSSAHVTFCSEEESHGLGAAGWLQ
                     RLGTQCHWDNQNYTSFEDFLASLSSRKRKAIRRERREAQAGLNFRALSGKELTPEVWD
                     HFYRFYTNTTDRKWGGGYLTPEFFPLLGERLGERVVLMLAERDGRPIAGALNLLGDGI
                     LHGRNWGCTEDAPFLHFELCYYQAIDYAIAHGLKCVEAGAQGENHKIQRGYLPSPTFS
                     AHFIRHRGLRQAVASFLEAEQLQLREAMAALSAEGPYRRDGEG"
     gene            2906..5488
                     /gene="pepN"
                     /locus_tag="VEQ16_02700"
     CDS             2906..5488
                     /gene="pepN"
                     /locus_tag="VEQ16_02700"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011631382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HYP62766.1"
                     /translation="MTATAARQPVRLADYQPPIFTVPQVALDVTLDPAASIVRARLSL
                     RRQAPGKLRLDGRKLKLRSIAIDGESLGDNRYELDDEGLTIHDTPDEFVLATEVEIAP
                     ETNTELSGLYMSGSGFFTQCEPEGFRKITFFPDRPDVMARYHVTMRADADKYPVLLCN
                     GNLLAQGKEDGKVWAVWEDPHPKPSYLFALVAANLVALHDKFTTQSGREVQLGIWVER
                     GDETRCGHAMESLKRAMRWDEETFGLEYDLDIFNIAAVSDFNAGAMENKGLNIFNTAY
                     VLASPETATDTDFQNVERVIAHEYFHNWTGDRITCRDWFQLSLKEGLTVFRDQEYMAD
                     QFSAPVKRIADVRLLRATQFRDDAGPLAHPVRPASYLEINNFYTTTIYEKGAEVVRMI
                     RTLIGRDAFRKGMALYISRNDNSAATVEDFVAAMQEATPERDLSHIMRWYAQAGTPEI
                     TVTEGHDSANNIFTLKFSQHTNATPGQERKDPFLIPVAMGFLDEHGRELHTETLVLSG
                     PEQSFSFAGVSAGAVPSLFRDFSAPVKLKGQSRPRLAFLAAHDTDLFNRWDALQQYAS
                     AALLDEVAAQQKGRDFSLDAGLLEAIKATLATAVRDPAFAAEALLLPTESLLADEMAV
                     VDPDAIHQVREAARHALGRALNEDFAAAYERFGHEEAGDKSGGAMAGRALKNAALAYL
                     CAAGDTSRASAQFAAARNMTDTLAALTNLADRPGAARDEALSAFYARWRHTPLVLDKW
                     FAVQARSNAPDTLARVQALTTHEQFDMRNPNRVRALIASFTGNPAKFHDASGAGYTLL
                     SDMVLRLDATNPQIAARLATALGTWRRFDAARQELMRTALERILACDTLSRNTYEMAS
                     KALA"
     gene            5505..6191
                     /locus_tag="VEQ16_02705"
     CDS             5505..6191
                     /locus_tag="VEQ16_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione binding-like protein"
                     /protein_id="HYP62767.1"
                     /translation="MIELYYWTTPNGHKITIFLEEAGTPYEIHPVNISAGEQFGEFFL
                     SFSPNNRIPAIRDTAPEDGGAPLTVFESGAILEYLAEKEQKFLPAATREKYNVLQWLY
                     WQMGGLGPMAGQNHHFVQYAPERIPYAMERYVKETNRLYGVLNKQLAGKEFICGDYSI
                     ADIACYPWIVPYERQQQTLDDFPNIKRWFAAMGARPAVQRAYETARAINEASTVTPDS
                     RAILFGQTAQ"
     gene            6188..6856
                     /locus_tag="VEQ16_02710"
     CDS             6188..6856
                     /locus_tag="VEQ16_02710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007002659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYP62768.1"
                     /translation="MTRLLYDLAGADPDLRFSPFCWRTKLALAHKNLDYETVPWRFTD
                     QDAIAFSGQNKVPVLVDGGQVVSDSQDIADYLEETYAHEPPLYGEAPARALTGFVKAW
                     AETVLQPALMRVLAPDIFARLDERDQDYFRTTREARLGCTLEELAARREEFVAAFQAA
                     LAPLLALLNEQDFLSGDAPGYADHIVFGALQWAKLMSSTPLIAEDSLISVWMAAVLET
                     YGLE"
     gene            complement(6848..>7153)
                     /locus_tag="VEQ16_02715"
     CDS             complement(6848..>7153)
                     /locus_tag="VEQ16_02715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1345 domain-containing protein"
                     /protein_id="HYP62769.1"
                     /translation="TLILSWATTHLIFTYRYAHEYYSYDLGYKTVDGGIQFPQDELPD
                     YFDFVYFSFCLGMTFQVSDCNVTSKKLRRLATLQGMIGFIFNTVILALSVNIAASLL"
BASE COUNT         1434 a         2275 c         2152 g         1292 t
ORIGIN      
        1 atctgttgat gggcgcgcaa gtggtcaaat atgcggatta cggcaagacg ctggaaatgg
       61 tgctggagct gttcccgcgc ctgaaggagc gcttcagcca gcgcggcggc acgctctcgg
      121 gcggggagca gcaaatgctg gccattgccc gcgcgctgat gagcaagccg aagctcctac
      181 tcctggacga gccgtcgctg gggctcgcac ccctggtgat caagcagatt ttcggcgcca
      241 ttcgccagct caaccgggaa acggggctta ccgtgctgct ggtggaacag aatgccaacc
      301 aggcgctgaa actggcgcat cgtggctatg ttctggtcaa tggcgccata accttgacgg
      361 ggggcgggct cgaattattg gcaaagccgg aaatccgggc cgcctatctc gaaggaggcc
      421 attgatacag cccaaatttt gggcgcataa tcgcgttacg tctgcgtttc acccctcaca
      481 cacaggaccg aaaacatgcg taaaatcctc cttgccaccg ccgccttcgt cagcctcggc
      541 ggcgggcttg cctatgccca gaccaagatt ggcgtcgccg gcccgctcac cggctccaac
      601 gccgcgttcg gcacgcaact catgaccggc gctacccagg ccgtcgccga catcaatgcg
      661 gcgggcggcg tgctcggcaa gcagctcact ctggtatccg ccgacgatgc ctgcgacccg
      721 aaacaggccg tgaccgccgc caacacgctg gtgacggatg gggtggtgat ggtggacggg
      781 catttctgct cctcctcctc catcccggcg agtgctgttt ataccgatgc cggcgtggtg
      841 cagatcaccc ctgcctcgac caacccgaaa tatacggatg aaggcaccgc cttcaccttc
      901 cgcacctgcg ggcgcgacga ccagcagggc aaggtggcag cgaaatatat cgccaagcat
      961 ttccccaagg cgaagatcgc cgtgctggat gataattcca cctacggcaa aggcattgcc
     1021 gaccaggtgc gcgccaatct cggcaagctg ggcgtggcgg ttgtctataa cgcctccttc
     1081 acggcaggcg acaaggatta taccgccctg gtgagccggc tgaagcagca gggcatcacg
     1141 ttggtctatc tgggcggcta ttatgccgat accggtctga tcgtgcgcca gagcgcggcc
     1201 cagggcttta cgccgcaatt cttctccgag gatgcgtcgg cgacccagga tttctggacc
     1261 accgccggca atgccgccga gggcacgctg ctgaccttcc cgccaccagc cgagaaggac
     1321 ccccatgcgg agaaagtcgt ggccgagctg acggcggcga agaaggaccc gaccggctat
     1381 gtgctttatt cctatgccgc catccaggcc tgggcggagg cggcgaagaa ggccggcacg
     1441 accgatggcg cgaaggtggc ggcggagctg aaatcgggcg ggccgtggcc gacggtgctg
     1501 gggccggtcg agttcaacgg taagggcgat gtggtgaatg cggcttatgc cgtctataag
     1561 ttccatgatg ggaactatac ggtgtttgcg ctgaagcctt aacggcctgt tatttcgagc
     1621 ctcgcgccgt gtttttgccc aatcaaggca atctcgctgc gcgaggcgct gcacggcgcc
     1681 aaccccgccg gggtacgaaa ctacccctcc ccatccctcc ggtacggccc ctcggcgctc
     1741 agcgccgcca tcgcctcccg caactgcagc tgctccgcct cgagaaacga cgccacggcc
     1801 tggcgcagcc cgcgatggcg gatgaaatgc gccgaaaaag tgggggaagg cagatagccg
     1861 cgctggatct tgtggttctc cccctgcgcc ccggcctcca cacatttcag cccgtgcgca
     1921 atggcataat cgatggcttg gtaatagcag agctcgaaat gcaggaaggg cgcatcctcg
     1981 gtgcagcccc aattgcgccc atgcagtatg ccatcgccca gcagattgag cgccccggca
     2041 atgggccgcc cgtcgcgctc ggccagcatc agcaccacgc gctcgcccag gcgctcgccg
     2101 agcaggggga agaattcggg cgtgagatag ccgccgcccc atttgcggtc cgtggtgttg
     2161 gtatagaagc ggtagaaatg gtcccacacc tccggcgtga gttccttgcc ggaaagggcg
     2221 cggaaattga gccctgcctg cgcctcgcgc cgctcgcgcc ggatcgcctt gcgcttgcgg
     2281 gaggagaggg aagcgagaaa atcctcgaag ctggtataat tctgattgtc ccaatggcat
     2341 tgcgtgccca ggcgctgcag ccagcctgcc gcgccaagcc cgtgcgattc ctcttcgcta
     2401 caaaatgtga catgcgccga ggagcagccg agctcctccg tcagcgccac cagcgcctcc
     2461 gccatggcag ccacgctcac cccgggccgg cgcaacagcc gcggccctgg caccggcgaa
     2521 aaaggggcgg cgatttgcaa tttagggtaa taacgcccac ccgcacgctc taacgcattg
     2581 gcccagctat ggtcgaacac atactcgcca taggaatgcg tcttcacata ggcgggcgtc
     2641 acggccgcca cctctcccgc atcgtccacc agcgccgcgt agcgggggta ccagccagta
     2701 tccgccccga ccgcgccgct atcctccagc gccgagagaa acccatatga gacgaacgga
     2761 ttgcccccgc tggcacaagc gttccaggcg gcttgcccga tcccggcaat gcgcggataa
     2821 atctgcacgc tcatggatgt ctgatcggcc ataacccaca ttaggcgtga ccggcagcat
     2881 tttgccagac caaagggaag ttcgcatgac cgccaccgcc gcacgccagc ccgtcagatt
     2941 ggcggactac cagcccccca ttttcaccgt cccgcaagtg gcgctggacg tcacgctgga
     3001 cccggccgcc agtatcgtgc gcgccagatt gtcgctccgc cgccaggcac cggggaagct
     3061 gcggctggat gggcgcaagc tgaagctgcg cagcattgcc atcgacggcg agtcgctcgg
     3121 agataatcgt tacgagctcg acgatgaagg tctgaccatc cacgacacgc cggatgaatt
     3181 cgtgctggca acggaagtgg aaatcgcgcc ggaaacgaat accgaacttt caggcctcta
     3241 tatgtccggc agcgggtttt tcacccagtg tgaaccggag ggtttccgca agatcacctt
     3301 cttccccgac cgcccggatg taatggcgcg ctatcatgta acgatgcgcg cggatgcgga
     3361 taaatatccg gtgctgctgt gcaacggcaa tctgctggct cagggcaagg aagatggcaa
     3421 agtctgggcc gtgtgggagg acccgcatcc caagccgtcc tacctcttcg ccctcgtcgc
     3481 cgcgaatctc gtcgcgcttc acgacaaatt taccacccaa tccggacgag aggtgcaatt
     3541 aggcatttgg gtggagcgtg gcgatgagac acgctgcggc cacgccatgg aatcactcaa
     3601 gcgcgccatg cgctgggacg aagagacatt tgggctcgaa tatgacctgg atattttcaa
     3661 catcgccgcc gtgtccgact tcaatgccgg cgccatggaa aacaaaggcc tcaatatttt
     3721 taacacggcc tatgtgctgg ccagccccga gacggcgacg gataccgatt tccagaatgt
     3781 cgagcgcgtc atcgcgcatg aatattttca caactggaca ggtgaccgca tcacttgccg
     3841 cgactggttc cagctctcgc tgaaggaagg gctgaccgtg ttccgcgacc aggaatatat
     3901 ggccgaccag ttctccgctc cggtgaaacg catcgccgat gtgcgcctgc tgcgtgcaac
     3961 acaatttcgt gatgacgccg gaccgcttgc gcatccggtg cggccggcaa gttaccttga
     4021 aataaataat ttttatacta ccactattta tgaaaaaggc gcggaagtgg tgcgcatgat
     4081 ccgcacgctg atcgggcggg atgcgtttcg caaaggcatg gcactgtata tttcaaggaa
     4141 cgataattcc gcggcgacgg ttgaggattt cgtcgccgcc atgcaggagg ccacgcctga
     4201 acgcgatctg agccacatca tgcgctggta tgcgcaggcc ggcacgccgg aaatcaccgt
     4261 gaccgaggga catgattccg caaataatat atttacactg aaattcagtc agcataccaa
     4321 tgcaacaccc gggcaagagc gcaaggatcc cttcctcatc ccggtggcta tgggatttct
     4381 ggatgaacat ggacgggaat tgcacacgga gacgctggtg ctgagcggac ccgagcaaag
     4441 tttcagcttt gcgggcgttt ccgccggcgc ggtgccgtct ttgttccgcg atttctcggc
     4501 gccggtgaag ctgaaagggc aaagtcgccc gcgcctggct tttctcgccg cgcatgacac
     4561 cgatttgttc aaccgttggg acgccctgca gcaatatgcc agcgcggcgc tgctggatga
     4621 ggtggcggcg cagcagaagg gccgggattt ctcgctggat gcggggctgc ttgaggctat
     4681 caaagccacg ctcgccaccg ccgtgcgtga ccctgccttc gctgccgaag cattgctgct
     4741 accaacggaa agcctgctcg ccgatgaaat ggcggtggtc gaccccgacg ccatccacca
     4801 ggtgcgcgag gcggcgcggc acgcgctggg ccgcgcgctg aacgaggatt tcgccgccgc
     4861 ctatgagcgg ttcggccatg aggaggccgg cgacaagagc ggcggcgcca tggccgggcg
     4921 cgcgctgaag aatgccgccc tcgcctatct ctgcgccgcg ggcgatacca gccgcgccag
     4981 cgcccagttc gccgccgcgc gcaacatgac cgacacgctg gcggcgctga ccaatctcgc
     5041 ggaccgcccc ggtgcggcgc gcgacgaggc tttgtccgcc ttctatgcac gctggcgcca
     5101 cacaccgctg gtgctggata aatggttcgc ggtgcaggcg cgctccaacg cgcccgacac
     5161 gctggcgcgc gtgcaggcgc tcaccacgca tgaacaattc gacatgcgca accccaaccg
     5221 cgtgcgcgcg ctcatcgcct ccttcacggg caatcccgcc aaattccacg atgcttcggg
     5281 tgcgggctat acgctgctgt ctgacatggt gctgcggctc gatgccacca acccgcaaat
     5341 cgcggcgcgt ctcgccactg cgctcggcac ctggcggcgg ttcgatgccg cgcggcagga
     5401 actaatgcgt accgctctgg aacgcatcct cgcgtgcgac acgctcagcc gcaacactta
     5461 cgaaatggcc tcgaaggcgc tcgcgtgagc aggaggagga agacatgatc gagctctatt
     5521 actggaccac gccgaacggg cataagatca cgatcttcct cgaggaagct ggtacaccct
     5581 atgagatcca tccggtcaat atcagcgcgg gcgagcagtt cggcgaattt ttcctcagtt
     5641 tttcgcccaa taaccgcatc cccgccatcc gcgataccgc ccccgaagat ggcggcgcgc
     5701 ccctgaccgt ttttgagtct ggcgccatcc tcgaatatct cgccgagaag gaacagaaat
     5761 tcctacctgc ggcgacgcgc gaaaaatata acgtgctgca atggctctat tggcagatgg
     5821 gcggcctcgg gccgatggcc gggcagaacc atcatttcgt gcaatatgcg cccgagcgca
     5881 tcccctatgc catggaacgc tatgtcaagg agactaaccg tctctatggc gtgctcaaca
     5941 agcagctcgc cggcaaggag ttcatctgcg gcgactattc gatcgccgac atagcctgct
     6001 atccctggat tgtgccgtat gagcggcaac agcagactct cgacgatttc cccaatatca
     6061 aacgctggtt cgccgccatg ggcgcgcggc cggccgtcca gcgcgcctat gagacggcgc
     6121 gcgccatcaa tgaagcttcc accgtcacgc cggactcccg cgcgatttta tttggtcaaa
     6181 cagcacaatg acacgtttac tctacgatct tgccggcgcc gacccggacc tccgcttcag
     6241 ccccttctgc tggcgtacca agctggctct ggcgcataaa aatctcgact atgaaaccgt
     6301 gccctggcgc ttcaccgacc aggatgccat cgccttctcc ggccagaaca aggtgccggt
     6361 gctggtcgat ggcgggcagg tggtgagcga cagccaggac attgccgatt atctggaaga
     6421 aacctacgcc cacgagccgc cgctttatgg cgaggcgccg gcgcgcgctc tgaccggctt
     6481 cgtcaaggcc tgggccgaaa ccgtgctgca gcccgctctc atgcgcgtgc tggcgccgga
     6541 tattttcgcc cggctcgatg agcgcgacca ggattatttc cgcaccacgc gcgaagccag
     6601 gctgggctgc acgctggaag agctggcggc acggcgcgag gaattcgttg ccgccttcca
     6661 ggccgccctt gcgccacttc tcgccctgct caacgaacaa gacttcctct caggcgatgc
     6721 gcccggctat gccgaccata tcgtgttcgg cgccctgcaa tgggccaagc ttatgtcctc
     6781 caccccgctc atcgccgagg acagcctgat ctccgtctgg atggcggcag tgctggagac
     6841 ctacgggcta gagtagggac gcggcgatat tgaccgacaa tgcgaggatg acggtgttga
     6901 agataaaccc gatcatcccc tgcaaggtgg cgaggcgccg cagcttcttg gaggtgacgt
     6961 tgcagtccga gacctggaat gtcatgccga ggcagaacga gaaataaacg aaatcaaaat
     7021 aatcaggcag ttcgtcctgc gggaactgta tgccgccatc cacggtctta tagccgagat
     7081 cgtaggaata atattcatgc gcgtagcggt aggtgaagat gagatgggtg gtagcccacg
     7141 acaggatgag cgt
//
LOCUS       DASQCV010000178         3048 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2025486, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000178 DASQCV010000000
VERSION     DASQCV010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3048)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3048)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3048
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2025486"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            454..1731
                     /locus_tag="VEQ16_02720"
     CDS             454..1731
                     /locus_tag="VEQ16_02720"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HYP62770.1"
                     /translation="MDPVLDLTSAPPQPADTDLGNRIGTGPGLEVAGQTLNTDLLRRF
                     YAHNGFEPVWTSRQTQVDSLLNVVRNAGDQGLDPELFHASALRHRDDLPPIDADLLLS
                     DAFLSYADALARGAVPVERRKNDETLSPGPIDVADVLNDALDNDPAGAIEALAPTTPT
                     YQALLQALQKQQTGATAGDAASASRLRAIEVNLERQRWLPRSLPTERVWVNVADESLI
                     FYRADLPVFSTRVVVGQDATNKQSPEFRAMIEASFFNPPWVVPSDIVKAEIQPLIDHD
                     PDYLTKNDMILLANGDAEQLPGPEAGLGLIMFDMPNRFDVFLHDTPDRDIFNLNNRRI
                     SHGCIRVQNPVELASLLLQQSTDTIHQEIAAGGTTRHDLPDPVPVFVVYETAFVDTDG
                     TLQFRPDFYKRDDEIWQLLQKHSQGQGSAAQPV"
     gene            complement(1998..2501)
                     /locus_tag="VEQ16_02725"
     CDS             complement(1998..2501)
                     /locus_tag="VEQ16_02725"
                     /inference="COORDINATES: protein motif:HMM:NF015298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HYP62771.1"
                     /translation="MTATTPRGSAARRCHRLAPALAISLLAGGLSACASNRLPAPRAS
                     LAPPAAVQPHPALLPAPMMVDSGPEMFGTASWYRPGPGLHRTCTGETFTRNGMTAASH
                     SIPVGTRVRVALADDSRSIVVRVNDCMPRGRRILDLSEGAAEQLGLVNMGIARVTVTP
                     VMLVDNR"
BASE COUNT          585 a          932 c          982 g          549 t
ORIGIN      
        1 tcaggcggcg gcggaggcgg aggcggcgga ggcggcggag gcggagctgc ctccggcgcc
       61 ggctggggct ccggctgatt ggaacatgcc gtgaggagcc ctaagggaac tacgacggca
      121 agcaaaacgg caccacggat caacttatgg cgagccgttg tatcggaact gatgaacatc
      181 cgttaccccc tcgttgctga attgcgcgta gacacgctag aatttaaaag caattctagt
      241 cgaagagtca aactatttgc gtgacttggc aatgattagg atcaaggagt ggcataattg
      301 cgcacatcgt ggcacaggct cggctttggc cgtcaaaagc taatgacgtc cgcgggggct
      361 caactgtccc ggcgcgccac acttgccggc agcgcggccg cgtttgccgc cgcctgtgcg
      421 cttacgggat gcgccgcgga tccgtcgccg gtcatggatc cggtgctcga tctgacctcc
      481 gcgccgccac agccggccga taccgatctc ggcaaccgca tcggcaccgg ccctggtctg
      541 gaggttgccg gccagacgct gaataccgac ctgctgcggc gcttctacgc gcataatggc
      601 ttcgagccgg tctggacgag ccggcagacc caggtggatt cgctgctgaa cgttgtgcgc
      661 aatgccggcg accaagggct cgaccccgag ctgttccatg ccagcgcgct gcggcaccgg
      721 gacgatctgc cgcccatcga tgccgacctg ctgctgtcgg acgccttcct ctcttacgcc
      781 gacgcgctgg cccgcggcgc cgtgccggtc gagcgccgga agaatgacga gaccctgtcg
      841 ccagggccga tcgacgtggc cgatgtgctc aatgacgcgc tggataacga tccggcgggc
      901 gcgatcgagg cgctggcgcc gacgacaccg acctaccagg cgctgctcca ggccctgcag
      961 aaacaacaga cgggcgccac ggccggcgac gcggcctcgg cgagccgctt gcgcgcaatt
     1021 gaagtcaatc ttgaacgcca gcgctggttg ccgcgctcgc tgccgacgga gcgcgtctgg
     1081 gtcaatgttg cggatgaaag tctcatattt taccgcgccg acctgccggt gttctcgacg
     1141 cgggtcgttg ttggccagga cgccacgaac aagcagagcc ccgaatttcg cgccatgatc
     1201 gaggcaagtt tctttaaccc gccatgggtc gtcccgagcg acatcgtcaa ggcggaaatc
     1261 cagccactga tcgatcacga cccggattat ctgacgaaga acgatatgat cctgctggca
     1321 aatggcgatg cggagcaact gcccgggccc gaagcggggc tcgggctgat catgttcgac
     1381 atgccaaacc ggttcgatgt tttcctgcac gacacgccgg atcgagatat cttcaacctc
     1441 aataaccgcc gcatcagcca tggctgcatc cgcgtgcaga atcccgtcga gcttgcctcc
     1501 ctgctgctgc agcaatcgac cgatacgatc catcaggaga tcgcggcggg cggcacgacc
     1561 cggcacgatc tgccagaccc cgtgccggtc ttcgtggtct acgagacggc ctttgtggat
     1621 acagacggga cgttgcaatt ccgccctgat ttctacaagc gtgacgacga gatctggcag
     1681 ctgctgcaaa aacactctca agggcaaggt tccgcggcgc agcctgtgta ggctgcaccg
     1741 gccgttggcg aacaatcagc tcgttgacgg ccgggaacct gccgtcatcg ttgttgccgg
     1801 gattttgcca gccggcttag agactgtttc agaaatcgct ctggtgagtc gtcaagcggt
     1861 gatttttgag taccggagcg gagcgtacta cagtacgtga gcactgttgc ttcgcgcact
     1921 cgaaccagtg gcgcgcgctc gcaaccgcag aaaatcgccg cttgacggcc gccagagtag
     1981 acttctgaaa cagtctctta gcgattatcg accagcatca ccggggtcac cgtgacgcgg
     2041 gcaattccca tattcacgag ccccagctgc tcggcggcgc cttccgaaag atcgaggatc
     2101 cggcggccgc gcggcatgca gtcattcacc cgcacgacaa tggagcggct gtcatccgcc
     2161 agcgccaccc gcacccgggt gccgacggga atggagtggg aagcggctgt catgccgttg
     2221 cgggtaaaag tctcacccgt gcaggtgcgg tgcaggccgg ggccaggacg gtaccaggag
     2281 gctgtgccga acatctccgg gccggaatcc accatcatcg gcgccggcag cagcgcgggg
     2341 tggggttgga cggcggcggg cggagcaagg ctggcccgcg gcgcgggcag acggtttgag
     2401 gcgcaggccg acaggccgcc tgcgagcagg gatatggcca gggcgggcgc gaggcggtgg
     2461 cagcgtctgg ctgccgaccc gcggggcgtg gtcgcggtca tctccataaa gttaatatga
     2521 tcaaccctat catattttgt ccagcatttt ccgccctgta tggcgcggcg aggggttgcg
     2581 gcgccatggc aaaggcacag gcgcaagtct tcggcactgg gttgatcgcc tagagtttat
     2641 agataaatca aaggctttta gatgaaggcg ggggagccgt atattgccgt atattaacgc
     2701 accgcgccca cgccaaattg ggtcatgccg ctcatatgga cgccaatttg gccggctgcc
     2761 tggtccgggc agtcctggct gtctggcgca ccgggatcaa gcgccgccgc tcggcattcc
     2821 ggtatggtgg ctgcctgggg ctcattggtg gcgcatcccg cgcatgcgag gacggtgagc
     2881 agacctaggg cggcacgaac catctttgat actcctttgg cccatttaac cgaaaaggac
     2941 gtaacaaagc ttaagcatgt gaggatgtac gttacggcgc acagccacac cgccagcctg
     3001 gggcagaccg tatggcccac tccaggctgg cagaggctta tttcagcg
//
LOCUS       DASQCV010000179         2728 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1031731, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000179 DASQCV010000000
VERSION     DASQCV010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2728
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1031731"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VEQ16_02730"
     CDS             <1..180
                     /locus_tag="VEQ16_02730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014413403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HYP62772.1"
                     /translation="REDVLNAVWGRDIHVEPRTVDVHIRRLRKAINGPGEMDVVRTVR
                     AAGYALDTDESASAA"
     gene            complement(221..529)
                     /locus_tag="VEQ16_02735"
     CDS             complement(221..529)
                     /locus_tag="VEQ16_02735"
                     /inference="COORDINATES: protein motif:HMM:NF018717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1330 domain-containing protein"
                     /protein_id="HYP62773.1"
                     /translation="MTAYMVVTLDVHDPSWVKEYMAAVPDIYETYGGKRIASSGPVTV
                     CEGDVRVPQTMILFTFPTEKAIHDFLADPAYAPWKEQRLKGASTTIWTFENKLRPDQR
                     "
     gene            691..1452
                     /locus_tag="VEQ16_02740"
     CDS             691..1452
                     /locus_tag="VEQ16_02740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016738658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIM24 family protein"
                     /protein_id="HYP62774.1"
                     /translation="MQHQISGTTMPVLQIGLDPGETIIAEPGEFAWMTGNIALNTTTQ
                     TAGARGIFGAIGRALSGGGLFMTEYTAQGGPGLVAFAAKVPGTIHQLDVPAGHSYLIH
                     KHGFLCATPGVQLSTGFQRQLGAGLFGGNGFIMQRLQGPCTAFVELGGESVVYDLRPG
                     ESIQVHPGHVGMFQETVNFDIVLLRGIKNMMFGNDGLYVARLTGPGKVWLQSMTVPNL
                     AHALAPYLSGEVPASPAQVGGAAIAGSILGDIFKS"
     gene            complement(1478..2323)
                     /locus_tag="VEQ16_02745"
     CDS             complement(1478..2323)
                     /locus_tag="VEQ16_02745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62775.1"
                     /translation="MNRLRVAWLPDGKRLHLYHDPIDLIIQAFGRPAEVGRAYDAGIA
                     RARALLPELREDVQRLKAGALPQGPAGQRALAACAAVPGGPPAVAVLHGAIADEMLAA
                     MVQAGQLERGFVNNRGAVSFHLAEGQSLTPQSMDWPAYHRFDVQLPVSAATRTRGLTA
                     AGWAYDGMALGWVNRIHVAAGSATMAASCLAGIATRMLPLEGGQTLTAVPQSPLEDIP
                     LYAPVPDMARDEAAAILAQGREVAEQLFAGSVITLAAMELGEQYCLVAPPNYSLKSII
                     MGLDG"
     gene            complement(2479..>2728)
                     /locus_tag="VEQ16_02750"
     CDS             complement(2479..>2728)
                     /locus_tag="VEQ16_02750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP62776.1"
                     /translation="ALDIEVRRVEHSWAGLRTFTLDRSLAFGWDKAAPGFFWCVGQGG
                     YGIQTAPAASALVAAMVKGEDPGPAGRIIPAIDPMRFR"
BASE COUNT          508 a         1024 c          742 g          454 t
ORIGIN      
        1 cgtgaggacg tgctcaacgc cgtctggggc cgcgacatcc acgtcgaacc ccgtaccgtc
       61 gacgtccaca tccgccgcct gcgcaaagcc atcaacggcc ccggcgaaat ggacgtcgtc
      121 cgcaccgtcc gcgccgctgg gtacgcgctg gacaccgacg aatccgcatc agccgcgtga
      181 aggaagaagg ccagggggca gagccccctg gccttcttcc ttacctctga tccggacgca
      241 gcttgttctc gaatgtccag atggtcgtgc tggcgccctt caggcgttgt tccttccatg
      301 gcgcataggc cgggtcggcg aggaaatcat ggatcgcctt ctccgtcggg aaagtgaaca
      361 ggatcatggt ctgcggcact cgcacatcgc cctcgcacac ggtcaccggc ccagaggagg
      421 caatgcgctt gccgccatag gtttcataaa tatcgggcac cgccgccatg tattccttca
      481 cccaggacgg gtcatgcaca tcgagcgtaa caaccatgta agcggtcatg cggagaactc
      541 ctgttcgact cttggacaat ccttgagtcc gcactcttag agggctgcgc gcacaaggca
      601 acatgtccgg gcaaattttt ccgcctgcac ctcccctttc cgcccgcacc aaaacctgct
      661 cagctggcgt aaccttcaag gagccgcgcc atgcagcatc agatttccgg caccaccatg
      721 cccgtcctgc aaatcggcct cgatcccggc gagaccatca tcgccgagcc cggtgaattc
      781 gcctggatga ccggcaatat cgccctcaac accaccaccc agaccgctgg cgcgcgcggc
      841 attttcggcg ccattggccg cgctctgtct ggcggcgggc tgttcatgac cgaatatacc
      901 gcgcagggcg gccccggcct cgtcgccttc gctgcgaaag tgcccggcac catccatcag
      961 ctcgatgtcc ccgccggcca ttcctacctc atccacaagc acggcttcct ctgcgccacg
     1021 cccggcgtgc agctttccac cggcttccag cgccagctcg gcgccggcct gttcggcggc
     1081 aacggcttca tcatgcagcg cctccagggc ccctgcaccg cgttcgtgga attgggcggc
     1141 gaaagcgtgg tctacgatct ccgccccggc gaatccatcc aggtccatcc cggccatgtc
     1201 ggcatgttcc aggaaaccgt gaatttcgac atcgtcctgc tgcgcggcat caagaacatg
     1261 atgttcggca atgacgggct ctatgtcgcc cgcctcaccg gccccggcaa agtctggctg
     1321 cagagcatga ccgtgcccaa cctggcccac gcccttgccc cgtacttaag cggcgaagta
     1381 ccggccagcc ccgcccaggt cggtggcgcc gccatcgccg gctccatcct gggcgatatt
     1441 ttcaaaagct agagtcttca gcttttagct gaagactcta gccgtcgagg cccatgatga
     1501 tggatttcag gctgtaattc ggcggagcga caaggcaata ttgctcgccc aactccatcg
     1561 ccgccagcgt aatgacgcta cccgcgaaca gctgctccgc cacctcgcgc ccttgcgcca
     1621 atatcgccgc cgcctcgtcc cgtgccatgt ccggcaccgg ggcataaagc ggtatatcct
     1681 caagcgggct ctgcggcacg gcagtcaagg tctgcccccc ttccaaagga agcatccgcg
     1741 tggcgatccc agccaggcag gaagccgcca tggtagccga gcccgccgcc acatgaatcc
     1801 ggttcaccca gcccagcgcc atcccgtcat aggcccaacc cgctgccgtc agcccgcgcg
     1861 tgcgtgtcgc cgcgctcact ggcaattgca catcgaaacg atgataggcc ggccaatcca
     1921 tcgattgcgg ggtcaggctc tgtccttccg ccagatggaa tgataccgca ccccggttat
     1981 tgacgaagcc ccgttccagt tgcccggcct ggaccatggc ggccagcatc tcatcggcga
     2041 tagcgccatg cagcaccgcc accgccggcg gcccgcccgg caccgccgcg caggccgcca
     2101 gtgcgcgctg cccagccggc ccctggggaa gcgcccccgc cttcaggcgc tgcacatcct
     2161 cccgcaattc aggcaacaac gcccgcgcgc gcgctatccc cgcgtcatag gcacggccaa
     2221 cctcggccgg ccggccaaaa gcctgaatga tgagatcgat cggatcatga tatagatgca
     2281 gcctcttgcc gtccggcagc caggccacgc gcaagcgatt cacacgcccc tccggcccac
     2341 acccctcagg ccacaatgcc cgaaagcacc ccgagcccta cgggtagcga agcgtctgca
     2401 cgtcatgccc gtgcataact cccgtaccct ggtgctgcaa gcatcgcgac ccggcaagcc
     2461 accaagcaca cctgggctct agcggaaccg catcggatca atggcgggaa taatccgccc
     2521 ggccggtccg gggtcctcgc ccttcaccat cgccgccacc agcgcactcg ccgccggcgc
     2581 cgtctgtatc ccgtatcccc cctggccgac gcaccagaaa aacccaggcg ccgccttgtc
     2641 ccatccaaac gccagagacc ggtccagcgt gaaggtacgc aaccccgccc agctatgctc
     2701 gacgcgccgc acttcaatat ccagcgcc
//
LOCUS       DASQCV010000180         6486 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2358020, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000180 DASQCV010000000
VERSION     DASQCV010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6486
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2358020"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..535)
                     /locus_tag="VEQ16_02755"
     CDS             complement(<1..535)
                     /locus_tag="VEQ16_02755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62777.1"
                     /translation="MTIEEANLRAQPLAVKATVKKAAAKKPAAKKPAAKKAAVKAPAK
                     KAAAPKKAAAPKKAAAVKKPAAKKAAAPKKTAAAKKPAAAKKAAAPKKAAAVKKPAAK
                     KPAAKKAAAPKKAAAVKKPAAKKAAAPKKAAAPKKAAAVKKPAAKKAAAPKKAAAVKK
                     PAAKKAAAPKKAAAPKKA"
     gene            complement(767..1039)
                     /locus_tag="VEQ16_02760"
     CDS             complement(767..1039)
                     /locus_tag="VEQ16_02760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62778.1"
                     /translation="MAALLVSAAAASVRNQDRVVAGSACNDHAPAPGKFKRRARPDLF
                     LRGAVAGAHVARMIRCGVFLHRLTKKMHRTRRFMMLFVDRLLRKAE"
     gene            1045..1404
                     /locus_tag="VEQ16_02765"
     CDS             1045..1404
                     /locus_tag="VEQ16_02765"
                     /inference="COORDINATES: protein motif:HMM:NF017935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF983 domain-containing protein"
                     /protein_id="HYP62779.1"
                     /translation="MPDWPQTIARGIRGRCPSCNAAPIFDGYLKVYEKCRHCGAPLGE
                     MPADDAPPYIAMLVVLHILALFIVLFYKGVFRPGFIMSGILLLLLALLCMVALRMAKG
                     AVIGILLKLGMRRERVS"
     gene            1401..1877
                     /locus_tag="VEQ16_02770"
     CDS             1401..1877
                     /locus_tag="VEQ16_02770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0262 family protein"
                     /protein_id="HYP62780.1"
                     /translation="MSDVKGRLTRIILEGESLHRISPLQEADVEQAVKDLQGENEFIP
                     ATQPGLQSLLRLSIQEGRLVFDIRDLEDEPVQLVILALGPFKMLIKDYQMLLDSYAHA
                     VAEGREARIQAIDMGRRGLHNEGAELMMERLKGKVEIDFPTARRLFTLVCSLHQKL"
     gene            1916..3004
                     /gene="mtnA"
                     /locus_tag="VEQ16_02775"
     CDS             1916..3004
                     /gene="mtnA"
                     /locus_tag="VEQ16_02775"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012226082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046523 -
                     S-methyl-5-thioribose-1-phosphate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HYP62781.1"
                     /translation="MKIDGTPYRSIWVDETDGWSVRIIDQTKLPWAVDLVRLTNMDEM
                     AHAIRAMLVRGAPLIGASAAYGVALAMRADASDSNLAQALALLGATRPTAINLRWALA
                     RMKDVLQPLPPAARTAAAYAEAAAICDEDVATNEAIGRHGLPLLAARGQNGRRVNVLT
                     HCNAGWIATVDWGTALAPIYMAHDAGLNVHVWVEETRPRNQGASLTAWELGKHGVPHT
                     VISDNAGGHMMQRGDVDLVIVGTDRVTRAGDVANKIGTYLKALAARDNGVPFWVALPS
                     STIDWTISDGLADIPIEERSAAEVTTMTGRALDGSIATVRIVPTASPAANPAFDVTPA
                     RLVTGLITERGLCDANETALSEMFKELA"
     gene            2997..3740
                     /locus_tag="VEQ16_02780"
     CDS             2997..3740
                     /locus_tag="VEQ16_02780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2272 domain-containing protein"
                     /protein_id="HYP62782.1"
                     /translation="MRKAFLLLLALGGCVANHAPPFATVPYQPFSRSAAVAIAADEWR
                     LWGSRVGEAPDYTQTESSMGERQQGLWQRIGEYWWEGMNAGHPESRWTGKHDSSGHIF
                     PIAVNGQYAWSAAFISYVMRIAGAGNDFPYSADHSTYINYAARAAQGKIAHPLLIAEN
                     PASYAPRLGDLACFPRGDARNLTFADLPASYDFTSHCGIVVGGRPGQLDVIGGNVQDA
                     VVLEHLGADAQGRITDPHWFVVLRVLYIE"
     gene            complement(3836..4585)
                     /locus_tag="VEQ16_02785"
     CDS             complement(3836..4585)
                     /locus_tag="VEQ16_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007006267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HYP62783.1"
                     /translation="MKNPTAAIIIIGNEILSGRTQDVNVQFIASRLALLGVRLEEVRV
                     VPDVPLRIIGAVNELRAAYDVVFTTGGIGPTHDDITSECVAAAFGVPWEPHEPSMKVL
                     RDYLGPRMNEAQARMATLPRGAEPIRNEVSIAPGFTMGNVHVMAGVPRIMQAMFLALE
                     PELPRGRPIEMRAVYGMGVMEGNITAGLSAIQDQFNDADLGSYPFQRDGRWGVAIVAK
                     GTDVARLEAAIIEATALIQAQGVAPVQGEPG"
     gene            complement(4582..5610)
                     /gene="mutT"
                     /locus_tag="VEQ16_02790"
     CDS             complement(4582..5610)
                     /gene="mutT"
                     /locus_tag="VEQ16_02790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HYP62784.1"
                     /translation="MPDLFDSFAPGSAAPESMARAAPPAGPELRTTRLLLRPLVAEDA
                     GIFHRLINDWEICRRLPDAPFPYPAQQAEDWIAAASRDREARRAEQFAIVEAASGALM
                     GVAGLRLAKGQKNAELGYWLGRPFWGQGFGLEAARRLVDWAFAALPIGHMTAIVAADN
                     DISEALLQRLGFAQTGKGTKEFSCRPGQKLPVKHFTLARDVPVAAEAQKADRVVLVVA
                     VALIDAQGRVLLARRPEGKKMAGLWEFPGGKMEPGETPEAALARELREELGIETNPRD
                     FAPFVFASHAYDSFHLLMPVFLCRRWQGEPAAREGQKLAWVAPESLVEYPMPPADRPL
                     IPMLRDFL"
     gene            5670..>6486
                     /locus_tag="VEQ16_02795"
     CDS             5670..>6486
                     /locus_tag="VEQ16_02795"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HYP62785.1"
                     /translation="MNAEPDHNTQLMAQMGANARTAAAALARLPAAARDAALRQGAAA
                     LRAASAGIIAANAQDMASFSGTAAFGDRLLLNEARVEAMARGLEEVADLPDPLTRVLA
                     EWTRPNGIKISRIAQPLGVLGMIYESRPNVGADAAAIAIKSGNAIVLRGGSESFHSAQ
                     AINKALSAAFAAAGLPENAVQTAPNTDRAFVAAMLSAAGFIDLIIPRGGKGLVERVQR
                     EARVPVLAHAEGLNHSYIHEKADFAMARTLLANAKMRRTGICGATETLLIDKAI"
BASE COUNT         1118 a         2193 c         1964 g         1211 t
ORIGIN      
        1 cggctttctt cggcgcagcg gctttcttcg gcgcggcggc tttcttggca gccggcttct
       61 tcacggcagc agccttcttc ggcgcggcgg ccttcttggc agccggcttc ttcacggcag
      121 cggccttctt cggcgcggca gctttcttcg gggcggcagc cttcttggca gccggcttct
      181 tcacggcggc ggccttcttc ggcgcggcag ctttcttcgc ggccggcttc ttcgcggccg
      241 gcttcttcac ggcagcagcc ttcttcggag cggcagcctt cttcgcagca gctggcttct
      301 tcgcggcggc ggtcttcttc ggcgcggcag ccttcttcgc ggccggcttc ttcacggcgg
      361 cagccttctt cggcgcagcg gccttcttcg gtgccgcggc cttcttcgcc ggcgccttca
      421 ccgccgcctt cttggcggcc ggcttcttgg cggcgggctt cttcgcagca gccttcttca
      481 ccgtcgcctt cacggcaagc ggctgggcac gcaggttggc ttcttcaatg gtcacgagtg
      541 atgctccttc aaattcaagg tttgggtcag ttcggcaatc cgctttcggc atagtggcgt
      601 ccggcacaga tgatcttcat tcaacggcgg caaaccgtcc ttcttgtttc gcgtgcgggc
      661 cactgaccga atggttcgac tgattggccg atcgatttcc cgatcgttag cttgtcagac
      721 tcgagactcg gttgcggcgc gaatcgcgcg atgcacgcaa gaatcgctat tctgctttac
      781 gcaacagcct gtcaacaaaa agcatcataa aacggcgtgt tcgatgcatt ttttttgtca
      841 atcgatgcaa aaacaccccg caacgaatca ttcgcgccac atgcgcgccc gccacagcac
      901 cgcgcaaaaa cagatcaggc ctcgctcgcc gcttgaattt gcccggcgca ggcgcatgat
      961 cattgcatgc agaccccgcc acaacccgat cctgatttcg aacgctggcc gccgcagcgg
     1021 aaaccagcag cgccgccatg gaacatgccg gactggccgc agaccatcgc gcgcggcatt
     1081 cgcgggcgct gcccctcctg caatgcggcg ccgatctttg atggttatct caaggtctat
     1141 gagaaatgcc gccattgcgg cgcgccgctg ggcgagatgc cggccgacga tgcgccgcct
     1201 tacatcgcca tgctcgtagt gctgcacatc ctcgctttgt tcattgtgct cttctacaag
     1261 ggcgtgttcc ggcccggttt catcatgtcc ggcatcctgc tattgctgct ggcactgctc
     1321 tgcatggtgg ccctgcgcat ggccaagggc gcggtcatcg gcatcctgct taaactcggc
     1381 atgcgccgcg agagggtttc atgagtgacg tgaaaggccg gctcacccgc atcatcctcg
     1441 aaggtgaatc attgcatcgc atctcccctc tgcaagaggc ggatgtcgaa caggcggtta
     1501 aagatctgca aggcgaaaat gaattcatcc ccgccaccca gcccggcctg cagagcctgc
     1561 tgcgcctctc catccaggaa gggcgcctgg tgttcgacat acgcgacctc gaggatgagc
     1621 cggtgcagct cgtcatcctc gcgcttggcc ccttcaagat gttgatcaaa gattaccaga
     1681 tgctgctgga ttcctacgcc catgccgtgg cggaagggcg cgaggcgcgc atccaggcca
     1741 tcgatatggg ccgccgcggc ctgcataacg aaggcgcgga actcatgatg gaacggttaa
     1801 aaggcaaggt tgagattgat tttccgaccg caaggcggct attcaccctg gtctgttccc
     1861 tgcatcaaaa gctctgaaga gaagctctga agcctcagct ctaggatttt tagcgatgaa
     1921 aattgacggc accccctatc gttcgatctg ggtggacgaa accgacggct ggtccgtccg
     1981 tatcatcgac cagaccaagc ttccctgggc ggtcgatctc gtacgcctca caaatatgga
     2041 tgagatggcg cacgccatcc gcgccatgct ggtgcgcggc gcgccgctca tcggcgcctc
     2101 cgccgcttac ggcgtcgcgc tggccatgcg cgcggatgca tccgactcaa acctggcgca
     2161 agcgctggca ctgctcggcg ccacgcgtcc caccgccatc aatctgcgct gggcgctggc
     2221 gcgcatgaag gatgtgctgc aacctctgcc gcccgcggcg cggaccgctg ccgcctatgc
     2281 ggaagccgcc gccatatgcg acgaggatgt cgccaccaac gaagccatcg gccgccacgg
     2341 cctgccgctc ctcgccgcgc gtggacagaa tgggcggcgc gtgaatgtgc tcacccattg
     2401 caatgccgga tggattgcca cggtcgattg gggcactgca cttgcaccta tctatatggc
     2461 gcatgatgcc gggctgaacg tgcatgtgtg ggtcgaggaa acccgcccgc gcaaccaggg
     2521 cgcttcgctc accgcgtggg aactgggcaa gcatggcgtg ccgcacaccg tcatctccga
     2581 caatgccggc ggccatatga tgcagcgcgg cgatgtcgat ctcgtcatcg tcggcacgga
     2641 tcgcgtcacg cgcgccggcg acgtcgccaa caagatcggc acgtatctga aggcgcttgc
     2701 cgcgcgcgac aacggcgtgc ccttctgggt ggcgctaccc tcctccacca tcgactggac
     2761 gatcagcgac gggctcgccg atattccgat cgaagaacgg tcggccgccg aagtgacgac
     2821 aatgaccggc cgcgccttgg acggatcgat tgccaccgtg cgcatcgtgc ccaccgccag
     2881 ccccgccgcc aacccggcat tcgacgtcac gccggcgcgt ctcgtcaccg ggctgatcac
     2941 cgagcgcggc ttatgcgacg ccaacgagac cgctctgtcc gaaatgttca aggaacttgc
     3001 gtaaggcctt tctgctcctg ctggcattgg gcggctgcgt ggcaaaccac gcgccgccct
     3061 ttgcgactgt gccctaccaa cctttctcgc gcagcgccgc cgttgccatt gccgccgatg
     3121 agtggcggct ctggggcagc cgcgttggcg aggcgcctga ttatacgcag accgagtcca
     3181 gcatgggcga gcgccagcaa gggctgtggc agcgtatcgg cgaatattgg tgggaaggaa
     3241 tgaatgccgg ccatcccgag tcgcgctgga ccggcaagca tgattccagc ggccatatct
     3301 tccccatcgc cgtgaacggg caatatgcct ggtccgccgc tttcatctct tatgtgatgc
     3361 gcatcgccgg tgccgggaat gattttccct attcggcgga tcactcaact tacatcaact
     3421 acgcggcgcg cgcggcgcag ggcaaaatcg cgcatcctct actcatcgcc gaaaaccccg
     3481 cttcatacgc accacgcctt ggcgaccttg cctgcttccc gcgcggcgat gcgcgcaacc
     3541 tcaccttcgc cgacctgccg gcctcttatg attttacctc gcattgcggc attgtcgttg
     3601 gcggccggcc gggacagctc gatgtcatcg gcggcaatgt gcaggatgcg gtggtgctgg
     3661 aacatctcgg cgctgatgcg caggggcgga tcacagaccc gcattggttc gtggttttgc
     3721 gtgtcttata tatagaatag agtaagaggc tgcttttttg aaccgtggcc ggcgtcccgt
     3781 ttcagactac gccgctgcgc cgctccgtca tcgggagaca agcggcgcaa aaaatttaac
     3841 caggctcacc ctgcacaggc gcaaccccct gcgcttgtat caacgccgtc gcctcgatga
     3901 tcgccgcctc cagccgcgcc acgtctgtcc ccttggcgac aatcgcgaca ccccagcgtc
     3961 catcgcgctg gaacggatag gagccgagat cggcatcgtt gaactggtcc tgaatcgcgc
     4021 tcaggcccgc ggtgatgttt ccttccatca cgcccatgcc gtacacggcg cgcatctcga
     4081 tgggccggcc gcgcggcaat tccggctcaa gtgcgaggaa catagcctgc atgatgcgcg
     4141 gcaccccggc catcacatgc acattgccca tggtgaaacc tggcgcgatg gaaacctcgt
     4201 tgcggatggg ttcggcgccg cgcggcaggg tggccatgcg cgcctgcgcc tcattcatgc
     4261 gcgggccgag atagtcgcgc agcaccttca tggaaggctc atgcggctcc cacggcacgc
     4321 cgaacgccgc ggcgacgcat tcgctggtga tgtcgtcatg ggtcggcccg atgccgccgg
     4381 tggtgaacac gacatcatag gccgcacgca gctcattcac cgcgccgata atgcgcagcg
     4441 gcacatccgg cacaacccgc acctcttcca gtctcacccc cagcagcgcc aggcgcgatg
     4501 cgatgaactg cacattcaca tcctgggtac ggccagaaag aatctcattg ccgatgatga
     4561 tgatggccgc ggtcgggttc ttcataaaaa atctcgcagc atgggaatga gcggacggtc
     4621 cgccggcggc atgggatatt cgacgaggct ttccggtgcc acccaggcaa gtttctggcc
     4681 ctcgcgcgcc gcgggctcgc cctgccagcg ccggcacaga aacaccggca tcagcagatg
     4741 gaagctgtca taggcgtgcg aggcgaagac gaaaggagcg aagtcgcgcg ggttggtttc
     4801 gatgcccagc tcctcacgca gctcgcgcgc aagggccgct tcgggcgtct cgcctggttc
     4861 catcttgccg ccggggaatt cccacagccc ggccatcttc ttaccttcag gcctgcgcgc
     4921 cagcagcaca cggccctgcg cgtcgatgag cgccaccgcc accaccagca ccacgcggtc
     4981 agctttttgc gcctccgccg ccaccggcac gtcgcgggcc agggtgaaat gcttcaccgg
     5041 caatttctgg cctggccggc aggaaaactc ttttgtgcct ttgccggtct gggcaaaacc
     5101 gaggcgctgc agcagcgcct cggatatatc gttatccgcc gccacaatgg ctgtcatatg
     5161 cccgatgggc agcgcggcga aggcccagtc cacgagccgc cgtgcggcct ccagcccgaa
     5221 gccctggccc cagaaaggcc gccccagcca atagcccagc tcagcgtttt tctgcccttt
     5281 ggcgaggcgc agcccggcca cgcccatcag cgcgccgctg gccgcctcta cgatggcaaa
     5341 ctgctcggca cgcctggcct cgcggtcccg cgacgcggcc gcaatccagt cctccgcctg
     5401 ctgcgccggg tagggaaagg gcgcgtccgg caggcggcgg cagatttccc agtcattgat
     5461 gaggcgatgg aaaatgcccg catcctcggc cacgagcggg cgcagcagta ggcgcgtggt
     5521 ccgcagctca ggcccggctg gcggcgcggc cctggccatg ctttctgggg cggcgctccc
     5581 tggcgcgaac gaatcgaaca gatctggcat acggttttct gtttagcgcg ctgttgatat
     5641 aaccgccaga accgagcatg tggaacggca tgaacgcgga acccgaccat aatacgcaac
     5701 tcatggcgca gatgggcgcg aatgcccgga ccgctgccgc cgccctggct cgcctgccag
     5761 ctgcggcgcg cgatgctgcc ctgcgccagg gtgccgccgc cctgcgtgcc gcgagcgccg
     5821 gcatcatcgc cgcaaatgcg caagatatgg ccagtttttc cggcaccgcc gcgttcggcg
     5881 accggctgct gctgaacgag gcgcgcgtgg aggccatggc gcgcgggctg gaggaggtag
     5941 cggatctgcc cgatccgctg acccgcgtgc tcgccgaatg gacccggccc aacggcataa
     6001 aaatctcccg catcgcccag ccgctcggcg tgctggggat gatttatgaa agccgcccta
     6061 atgtcggcgc ggatgccgcc gccatcgcca tcaaatccgg caacgccatt gtgctgcgcg
     6121 gcggctcgga gagttttcac tccgcccagg ccatcaacaa ggcactgagc gccgcctttg
     6181 ccgcggccgg gctgccggag aatgcggtgc agacggcgcc gaacacggac cgcgccttcg
     6241 tcgccgccat gctcagcgct gccggcttca tcgacctcat catcccccgc ggcggcaagg
     6301 ggctggtgga gcgtgtgcag cgcgaggcgc gcgtgccggt gctcgcccat gccgaagggc
     6361 taaaccacag ctatatccac gagaaggcgg atttcgccat ggcccgcacc ttgctcgcca
     6421 acgccaagat gcgccgcacc ggcatttgcg gcgccacgga aacattgctc atcgacaaag
     6481 ccatcg
//
LOCUS       DASQCV010000181         4226 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2856076, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000181 DASQCV010000000
VERSION     DASQCV010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4226
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2856076"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            287..826
                     /locus_tag="VEQ16_02800"
     CDS             287..826
                     /locus_tag="VEQ16_02800"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010398859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030612 - arsenate reductase (thioredoxin)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HYP62786.1"
                     /translation="MTERIYNVLFLCSGNSARSIMAESILRKLGQAHFRAYSAGSQPK
                     GFVNKLALKVLQSLDFPTEGLRSKSWDEFAVEGAPVMDFVFTVCDDAAGETCPIWPGH
                     PMTAHWGIDDPTLAEGTEIQMERAFVQSFKYLRNRISIFLALPLSSIDELALGVKLRE
                     IGHEEGETARGAENYRVDG"
     gene            819..1160
                     /locus_tag="VEQ16_02805"
     CDS             819..1160
                     /locus_tag="VEQ16_02805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019088111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HYP62787.1"
                     /translation="MADVKIYFNPKCGTARNALALIREAGIEPDIIDYMKNPPARAEL
                     AALAKRGGGAGFLLREKEPLAAELGLKGAPDTAILDAIAANPILLNRPVVATPKGVKA
                     CRPAELVKDLL"
     gene            1160..1462
                     /locus_tag="VEQ16_02810"
     CDS             1160..1462
                     /locus_tag="VEQ16_02810"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HYP62788.1"
                     /translation="MFVVIFRAEAGKMDEGYAQTAAALREMALRDFGCLEFHSVSEGA
                     QEITLSYWPDETSIMAWKAQAEHLAAQKRGGSRWYASYRVQVARIERDYSFPRSVP"
     gene            complement(1613..2722)
                     /locus_tag="VEQ16_02815"
     CDS             complement(1613..2722)
                     /locus_tag="VEQ16_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PA0069 family radical SAM protein"
                     /protein_id="HYP62789.1"
                     /translation="MSAVSRVQVKTRDVPGAIKGRGTAINPPNRFEAARLEAFDDGWD
                     LPEEEAARPQTTLLRDSTRTIIARNDSPDLFFTQSVNPYRGCEHGCIYCFARPSHAYL
                     GFSAGLDFETKIIFKPDAAKLLEKELSRASYKPGVIVLGSNTDPYQPVERTLSITRSV
                     LEVLERFNNPVGIVTKSAGVLRDTDILSRMAAKSLAKVHISITTLDPALARALEPRAA
                     SPQRRLAAVRELRAAGIPVGVLASPMIPGVNDAELESIFEAAAKAGAESAYTILLRLP
                     HELAPLFTDWLQKHMPDRAAHVLSLIRQARGGRLNDPDFHSRFAGSGPYADMLHQRFE
                     RAARQFGLEGGSASLDCSQFTVPGAQSAPAQMSLF"
     gene            complement(2801..3412)
                     /locus_tag="VEQ16_02820"
     CDS             complement(2801..3412)
                     /locus_tag="VEQ16_02820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62790.1"
                     /translation="MRSSLVGHSEQRHRGPPLWPTAIISTLLLSAGLFFVTGVAGAAL
                     QFGAAVPLGIYAAAAASRLRFLGVRAAGTNIALFGGVAASINLMGAGAILWAMCFPGL
                     AQDSALAAALHRLQLVLGGPGLSVPFGLLLAGIAITGGLSRLLPPWLFITGLVLAAIS
                     ELSWFGMILPQILPLIPLSLFPGFLWLILTGFILPATRTQPDS"
     gene            3627..4007
                     /locus_tag="VEQ16_02825"
     CDS             3627..4007
                     /locus_tag="VEQ16_02825"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HYP62791.1"
                     /translation="MLELSPPHAGILGILARTPGLSQRALAKALGTLPSRLVTFIDEL
                     EAKGLVERRPDEADRRNNALRLTETGQVSLAALGRIARAHQSVLLAALSPDEQQQLAS
                     LLQRVADEQGLLPFAHPGYRSIGD"
     gene            complement(4030..>4226)
                     /locus_tag="VEQ16_02830"
     CDS             complement(4030..>4226)
                     /locus_tag="VEQ16_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62792.1"
                     /translation="PINNVMARRRPAFAKRAANISRADDSEFHVPSPFRIKLGKTWRF
                     TKLNKFNECRLLIWPPPPHQ"
BASE COUNT          859 a         1211 c         1372 g          784 t
ORIGIN      
        1 gccgcttttt tgtagtttag cgggtgtccc gattcagacg acgcttcttc gccgcttcgt
       61 caccaggatg cgagcggcgc aaaaaacttt gagactgggg ccgaagcctt tgactccatg
      121 ggatgcctcc cctgtcttgg ccggtgcaaa tgtgacgatt cggggaagac aggagggagg
      181 gcggcgcgaa agcttgtccg ccagggcgcg cttcgcttaa ggcaacggca aaagcggcaa
      241 ggcccgctgg ggccaccgcg cgcaaccgtc acctgggaga gcccacatga ccgaacgcat
      301 ctataatgtc ctgttcctct gctcgggtaa ttctgcccgc tcgatcatgg cggaatccat
      361 cctgcgcaaa ctcggccagg cgcatttccg cgcctattcg gccggcagcc agcccaaagg
      421 cttcgtcaat aagctggccc tgaaagtgct gcaaagcctt gattttccaa cagagggcct
      481 gcgctctaaa agctgggatg aatttgccgt cgagggcgcg ccggtgatgg atttcgtctt
      541 caccgtttgc gacgacgccg ctggcgagac ttgccccatt tggcccggcc acccgatgac
      601 ggcgcattgg ggcatcgacg accccaccct ggcggagggc accgaaatcc agatggagcg
      661 cgccttcgtc cagtccttca aatatctacg caaccgcatc tccatcttcc tggccttgcc
      721 gctctccagc atcgatgagc tggcgcttgg cgtgaaactg cgcgagattg gccatgaaga
      781 gggcgagacc gcccggggcg cggagaatta tcgggtagat ggctgacgtt aaaatatatt
      841 ttaaccccaa atgcggtacg gcgcggaacg cgctggccct gatccgggaa gccgggattg
      901 agccggatat cattgattat atgaaaaacc cgccggccag ggcggaacta gcggcgctcg
      961 ccaagcgtgg cggcggggca gggtttttgc tgcgcgagaa ggagcccctg gctgccgagc
     1021 tggggctgaa aggcgcgccg gacacggcta ttctcgatgc tattgccgct aatcccatcc
     1081 tgctcaatcg ccccgtggtg gcgacgccga aaggcgtaaa agcctgccgc ccggcggagc
     1141 tggtgaagga tctgctctga tgttcgtcgt catcttccgc gccgaggcgg ggaagatgga
     1201 tgaggggtat gcgcaaaccg ccgccgcctt gcgcgagatg gcgcttcggg attttggttg
     1261 tctggaattc cattcggtga gtgaaggggc gcaagagatc acactctcct actggccgga
     1321 tgaaacctcc attatggcgt ggaaggcgca agctgagcat ctagccgcgc aaaagcgggg
     1381 aggtagccgc tggtatgcca gttaccgcgt gcaggtcgcg cggattgaac gggattattc
     1441 atttcccagg tctgttccat aagcccggcg ggccgggcat tcgcttcatg aaaggcaaat
     1501 agctcgccca gttgcgcggc acagaccact gccatgcaaa ggcaacctgc gagcgaagcc
     1561 aagccggtga tgatggtaag gctgaacatg ggcacagaat cctttcagaa tttcagaaca
     1621 ggctcatttg cgccggcgcg ctttgcgcgc caggcacggt gaattggctg caatcgaggc
     1681 tggcgctgcc gccctccagc ccgaattgcc gcgcggcgcg ttcgaagcgc tgatgcagca
     1741 tgtccgcata ggggccggag cccgcgaagc gtgagtggaa atccggatcg ttgagccggc
     1801 cgccgcgggc ctggcgaatg aggctcagca catgcgcggc gcgatccggc atatgtttct
     1861 gcagccagtc ggtaaaaagc ggagccagct catgcggcag gcggagcagg atggtgtagg
     1921 cgctttccgc tccggccttg gccgcggctt cgaagatgct ttccagctcg gcatcattca
     1981 caccgggaat catcggcgaa gccagaacgc ccactggaat gccggccgcg cgcaactcac
     2041 gcaccgcggc gaggcggcgc tggggcgagg cggcgcgggg ttccaatgcg cgcgccagcg
     2101 ccggatcgag cgtggtgatg gagatatgca ccttcgccag gcttttcgcg gccatgcggg
     2161 acaaaatatc ggtatcgcgc agcacgccgg cggatttggt gacgatgccg accgggttgt
     2221 tgaagcgctc cagcacttcc agcaccgagc gggtaatgga caaggtgcgc tccaccggct
     2281 ggtatgggtc ggtattggag ccgagcacga taacaccggg cttatagctg gcgcgggaga
     2341 gttccttctc cagcaatttg gcggcatccg gcttgaagat gattttcgtc tcgaaatcga
     2401 gcccggccga gaagccgaga taagcgtggc tggggcgggc gaagcaatag atgcagccat
     2461 gctcgcagcc ccggtaggga ttcacgctct gggtgaagaa gaggtccggg ctgtcattgc
     2521 gggcgatgat ggtacgggtg gaatcgcgca gcaacgtggt ctgcggccgc gccgcctctt
     2581 cctcgggcag gtcccagccg tcgtcgaagg cttccagccg cgccgcctcg aagcggttgg
     2641 gcgggttgat ggcggtgccg cgccccttga tggcgcccgg cacatccctg gtcttgacct
     2701 gcacccgtga aactgctgac atgttcacgc tccgttctgg ccttgattaa ggtcacatcc
     2761 gggcgaactg tcaagaacaa aatgagaaca aaatcgcggg ctaactgtcc ggctgagtcc
     2821 ttgtggccgg caggatgaaa cctgtgagaa tcagccacag aaaaccggga aacaaagata
     2881 acgggataag aggcagaatc tgcggcaata tcatcccgaa ccagctcagc tcgctgatgg
     2941 cagccaggac cagacccgtg atgaacagcc atggcggcag aaggcggctc aggccgccag
     3001 tgatggcgat gccagcgagc agcagtccga acggcaccga caagccgggc ccaccgagca
     3061 ccagctgcag ccgatgcaag gccgccgcca atgcactatc ctgggcaagc cctggaaagc
     3121 acattgccca tagaatggcg cctgctccca tcaagttgat ggaagccgcg acgccgccga
     3181 aaagcgcgat attggtcccg gccgccctaa cgccgaggaa gcgaaggcgg ctggccgcgg
     3241 cggcggcgta aatgccaagc ggcaccgcgg cgccgaattg cagtgcagcg ccagcaacgc
     3301 cggtgacgaa aaacaagccg gcactgagga gcagggtgga gatgatagcc gttggccata
     3361 atggcggtcc gcggtggcgc tgctcgctat gccctacaag tgacgaacgc atgtacattc
     3421 tcccgaaaaa caggttatga tgataatcgt tcatactatg aacgattatt ttgtggaact
     3481 atttttttaa ttcaggtgag gagggcgagc tgacgatatc taatgatgat gcgccaaaac
     3541 atgctggcca gccgtccgcg ggcccggcct ttctgctggc ccagctcggc gcgcacgcgg
     3601 cgcgaaaatt tgcggagcgg attgccgtgt tggagctcag tccgccccat gcggggattc
     3661 tcggaatctt ggcgcgcacg cccggcttga gccaaagggc acttgccaag gcgctaggca
     3721 cgctgccgag ccggcttgtc actttcatcg acgaactgga ggcgaaaggg ctggtcgagc
     3781 ggcggccgga cgaggcggac agacgcaata atgcccttcg cttgactgag acagggcagg
     3841 tttcgttggc ggcgttgggc aggatcgccc gtgcacacca gagcgtgctt ctggccgcgc
     3901 tttcccccga tgagcagcaa caacttgcca gcctgttgca gcgtgtcgcc gatgagcagg
     3961 ggctgctgcc ttttgcgcat ccgggttatc gcagcattgg cgattagcca gctgaaaggc
     4021 cgcatgattt tattggtgcg ggggcggagg ccagatgagc agcctgcatt cattaaattt
     4081 attcaatttc gtgaatctcc atgtcttgcc tagtttgatc ctgaaagggg acgggacatg
     4141 aaactcgcta tcatcggcgc gggaaatgtt ggcagcgcgc ttggcaaagg ctggtcggcg
     4201 gcgggccatg acattgttta tggggt
//
LOCUS       DASQCV010000182         1559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2524723, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000182 DASQCV010000000
VERSION     DASQCV010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2524723"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..545)
                     /locus_tag="VEQ16_02835"
     CDS             complement(<1..545)
                     /locus_tag="VEQ16_02835"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYP62793.1"
                     /translation="MMFPDGKLYINGKLRDAENGAKYDDVSPWTGEVIARAADASAAD
                     MEEAIASARKAFDETDWPTNAKLRRELVVKLGEKLKANRDRLAAYAQHEVGSAQGFVA
                     GPQVGSPLSYIDDLLKIFDDIEWEKPMGDRPGWVGVSRRVLVKEAAGVVGVITPWNVP
                     LYITVGKVIPALLAGCTVIVKP"
     gene            complement(591..1346)
                     /locus_tag="VEQ16_02840"
     CDS             complement(591..1346)
                     /locus_tag="VEQ16_02840"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP62794.1"
                     /translation="MAGKVIAITGANGGLGRALAQFFAEGGEQVVLLGRKLDKVQEVA
                     AAIGSQAFAVACDVGKPESVTAAFKVIAGKYGKLDVLINNAAIFHPFLIEEATDAQIM
                     DPVLANLAGPILCCRGAIPLMGRGGHIINISSESVTVPLPHLSVYQATKAGLENFSEH
                     LQRELEDKGIRVTVVRAGQMMGPGMSVEMEPQAAMRFGAEAMRRGLNLRERGITLYPS
                     TMPVFRMLVDLAPDLQVGHVVLAARVPGETAAE"
BASE COUNT          285 a          580 c          418 g          276 t
ORIGIN      
        1 ggcttcacga tcacggtgca gcccgcgagc aaagccggga tcaccttgcc cacggtgata
       61 tagagcggca cgttccacgg cgtgatcaca cccaccacgc ccgccgcttc cttcaccagc
      121 acgcgccggc tcaccccgac ccagccggga cggtcgccca tcggcttttc ccactctatg
      181 tcgtcaaaaa tcttcagcag atcgtcgata taggagagcg gcgagcccac ctgcggcccg
      241 gcgacaaaac cctgcgccga gcccacttca tgctgcgcat aggccgccag ccggtcgcgg
      301 ttcgccttca gcttctcgcc cagcttcacc accagctcgc gccgcagctt cgcgtttgtg
      361 ggccaatccg tctcgtcaaa cgccttcctg gcggaagcaa tcgcctcctc catgtccgcc
      421 gcggacgcgt ccgcagcacg cgcgatcacc tcgcccgtcc aggggctgac atcgtcatat
      481 ttggcaccat tctccgcatc gcggagcttg ccattgatat agagcttgcc atcgggaaac
      541 atcatcgtga actttcctct cgtgaaattg gagatgggct ctcgcggccc ttattctgca
      601 gccgtctcgc ccggcacgcg cgccgccagc accacatggc cgacctgcag gtcgggtgcc
      661 agatcaacca gcatgcggaa caccggcatg gtggacgggt agagtgtgat gccgcgctcg
      721 cgcagattca gcccgcgccg catcgcctcg gcgccgaaac gcatcgccgc ctgcggctcc
      781 atctccacgg acatgcccgg ccccatcatc tgcccggccc gcaccacggt cacgcggatg
      841 cctttgtcct caagctcgcg ctgcagatgc tcggagaaat tctcaagccc ggccttggtc
      901 gcctgataca cgctcaaatg cggcagcggc accgtcacgg attccgagct gatattgatg
      961 atatgcccgc cacgccccat cagcgggatg gcgccgcggc agcacagaat cggccccgcc
     1021 agattggcca gcaccgggtc catgatctgc gcatctgtcg cctcctcgat gaggaaggga
     1081 tgaaagatgg cggcattatt gatgagcaca tcgagcttgc catatttccc ggcaatcacc
     1141 ttgaaggcgg cggtcacgga ctccggcttg cccacatcgc atgccaccgc gaaggcttgg
     1201 ctgccgatcg cggcggccac ttcctgcacc ttgtccagct tgcggccgag cagcaccacc
     1261 tgctccccgc cctcggcgaa aaactgcgcc agcgcgcggc ccagcccgcc attcgccccc
     1321 gttatcgcta tcaccttgcc ggccatcaac gttcctcgca aaattgcaat cttgtggcgc
     1381 acagatggca ttgtccggcc agcggcggca aggaccgcac catcgtggcg gcgataactg
     1441 ccgcgcccgc ccgccgcgcc cgataaaacc cccgtcaggc ccccattaaa cccagaacca
     1501 acgccctgtt ccgcccggct attttattct gtttcgcaaa caagcctgcc atgcggacc
//
LOCUS       DASQCV010000183         1569 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1696164, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000183 DASQCV010000000
VERSION     DASQCV010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1696164"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="VEQ16_02845"
     CDS             <1..254
                     /locus_tag="VEQ16_02845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62795.1"
                     /translation="GGDAGEHRSGQAERYDGWKDGSPDAHDSSKATLGPRQSARLGPA
                     RHICCLVGVITFVGKVKPFRAKKKMLRYFRIKLPGGFSC"
     gene            372..>1569
                     /locus_tag="VEQ16_02850"
     CDS             372..>1569
                     /locus_tag="VEQ16_02850"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYP62796.1"
                     /translation="MFSKCSSSTIRIVTAATQGEALIGRGGELARLARIIRAAATGRG
                     SAVLIEGEPGIGKSSLMRAALAEAADARCQVFWGSGDELGQALPLLPLLEALRVREMP
                     NSPRRNTIVRLLRGELAADRGADVAAALAEQLLALIMEECTAQPAILVVDDLQWADQV
                     TVTLWARLARSAHQMPLLLAGMMRPVPRREDLLALRRAAGEEARLQLTRLTDEAVAEL
                     ITALADGKPGNDLLQLADGAAGNPLYVTELVAALARSDRLTPTVMGTIGLASERAPAS
                     LSAAIADRLDFLSAPTREVLQAAALLGVDFAVSDLMIVLDRHIADLMPTFDESRAAGV
                     LADSTVGLSFRHPLIRSALYDAMPVSLRAAWHRGTGQALAQAGAPPDRVARQLLGAFA
                     DPGPADP"
BASE COUNT          258 a          517 c          520 g          274 t
ORIGIN      
        1 ccggcggtga cgccggtgag caccgatccg gccaggccga gcgctacgat ggctggaagg
       61 atggctcgcc tgatgcgcat gactcctcca aggcgactct cgggccgcgg cagtccgcgc
      121 gcctagggcc cgcgcggcac atttgctgcc tcgtgggagt tattaccttt gttggcaagg
      181 tcaagccttt cagggcaaaa aagaagatgc ttcgatattt ccgcattaaa ttgcccggag
      241 gattctcatg ctaatactgt ttaaatgttc aatgggatat gcgctgcaac tttcaccggt
      301 gattttcccc tttggctgcg gctgactttc cgtgagggta aggacgagcg gccatcgtcc
      361 gaaatgcccg cttgttcagt aaatgttcta gtagtacaat ccgcatcgtg acggccgcga
      421 cacagggtga agcactgatc ggccgcggcg gcgagttggc gcgcctagcc aggatcatcc
      481 gggccgccgc cacagggcgg ggaagcgcag tcctgatcga aggcgagccc ggcatcggca
      541 aatcctcgct catgcgggcg gccctggcgg aggcggcaga tgcccgctgc caagtgttct
      601 ggggttccgg cgacgaactg ggccaggcct taccgctgct gccgctgctg gaagcattgc
      661 gggtccgcga gatgcccaac agcccacggc gcaacaccat cgtcaggctg ctgcgcggtg
      721 agcttgctgc cgaccgcggg gctgatgtgg cagctgcgct ggccgaacag ctcttggcac
      781 tgatcatgga ggagtgcacc gcgcagcccg ccatcctggt cgttgacgac ctccagtggg
      841 ccgaccaggt taccgtgacg ctatgggcgc ggctggcacg gtcagcgcac cagatgccgc
      901 tcctgctggc agggatgatg cgcccggtgc cccggcgcga agacttgctg gccttgcggc
      961 gggcggcggg cgaggaggcc cggctccagc tcaccaggct caccgatgag gcggtggccg
     1021 agctgataac ggccctcgcc gacggcaagc ccggcaacga cttgctgcag ctagccgacg
     1081 gggccgcggg caacccgctg tatgtcaccg aactagtcgc cgcgctagcg cgcagcgaca
     1141 ggttgacccc cacagtcatg ggaactatcg ggctggccag cgaacgcgca ccagcttcgc
     1201 tgtcggcggc catcgcagac cgcctggact tcctctccgc accgacgcgg gaggttctgc
     1261 aagcggccgc cttgcttggc gtggacttcg cggtatcgga cctaatgatc gtgctcgacc
     1321 gccacatcgc ggacctgatg ccgacctttg acgagtcccg cgccgcggga gtgctcgcag
     1381 attccacagt tggcctgtca ttccgacacc cgctgatccg gtcggccctg tatgacgcga
     1441 tgccggtgtc gctgcgtgcc gcctggcacc gcggtaccgg ccaggcgctt gcccaggccg
     1501 gcgccccacc tgaccgggta gcccggcagc tgctgggagc cttcgccgac cctggcccag
     1561 ccgatccag
//
LOCUS       DASQCV010000184         2153 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2690464, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000184 DASQCV010000000
VERSION     DASQCV010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2690464"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            156..1961
                     /gene="lepA"
                     /locus_tag="VEQ16_02855"
     CDS             156..1961
                     /gene="lepA"
                     /locus_tag="VEQ16_02855"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HYP62797.1"
                     /translation="MTGTPLDLIRNFSIIAHIDHGKSTLADRLIQHCGGLTAREMTEQ
                     VLDNMDIEKERGITIKAQTVRLAYPAADGKTYVLNLMDTPGHVDFAYEVSRSLAACEG
                     SLLVVDASQGVEAQTLANVYQAIDAGHEIVPVLNKIDLPAADVPRVKQQIEDVIGIDA
                     SDAVEISAKTGLNIEGVLEALVTRLPPPQGDETAELQALLVDSWYDQYLGVVILVRVK
                     NGILRRGQKIRMMSSGAVHPIEQLGVFTPKMRAVEQLGPGEMGYITAAIKTVADCNVG
                     DTITEDRRPAPEPLPGFKPSIPVVWCGLFPVDADDFEKLRESLAKLRLNDASFHYEAE
                     TSAALGFGFRCGFLGLLHLEIIQERLSREFDLNLIATAPSVVYHIYKTNGEMEPLHNP
                     ADMPDGSIIDHIEEPWIKATIMVPDDYLGSILTLCSERRGQQQDLTYVGNRAMAVYRL
                     PLNEVVFDFYDRLKSVSRGYASFDYQLEDYAEADLVKISILVNQEPVDALSFIAHRSQ
                     AETRGRAICGKLKDLIPKQLFKIAIQAAIGGRVIARETISALSKDVTAKCYGGDISRK
                     RKLLEKQKEGKKRMRQFGKVEIPQSAFLAALKMDA"
     gene            2020..2110
                     /locus_tag="VEQ16_02860"
     tRNA            2020..2110
                     /locus_tag="VEQ16_02860"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2054..2056,aa:Ser,seq:gga)
BASE COUNT          404 a          699 c          657 g          393 t
ORIGIN      
        1 gccccttttc aattcttaaa aagttatggg gggctggggc ctcaggcccc agcgggtcca
       61 gggcagagcc ctggccttcc ttaatacggc cttgcgcacc ggcgccagca ccgccatatc
      121 gacgccgccc ctcattttcg cgtaaagcac ccgctatgac cggcacacct ctcgacctga
      181 tccgcaattt ctccatcatc gcccatatcg accatggcaa atccaccctg gccgaccggc
      241 tgatccagca ttgcggcggc cttaccgcgc gcgagatgac ggagcaggtg ctcgataaca
      301 tggatatcga gaaggagcgc ggcatcacca tcaaggcaca gacggtgcgc ttggcttatc
      361 cggccgcgga cgggaagacc tatgtgctga acctcatgga cacgcccggc catgtggact
      421 ttgcctacga ggtgagccgc tccctcgccg cctgcgaggg ctcgctgctg gtggtggatg
      481 cctcccaggg cgtggaagcg cagacgctgg ccaatgtgta tcaggccatc gatgcggggc
      541 atgagattgt gcccgtcctc aacaagatcg acctccccgc cgccgacgtg ccgcgcgtga
      601 agcagcagat cgaggatgtg atcggcatcg acgcctcgga tgcggtggaa atctcggcca
      661 agaccggcct caatatcgag ggcgtgctgg aagcgctcgt cacccgcctg ccgccgccgc
      721 agggcgacga gactgcggag ctgcaggcgc tgctggtgga tagctggtac gaccagtatc
      781 tcggcgtggt catcctggtg cgcgtgaaga atggcatttt gcgccgtggc cagaagatcc
      841 gcatgatgtc ctccggcgcc gtgcacccca tcgagcagct tggcgtgttc acgccgaaga
      901 tgcgcgccgt tgagcagctc gggccgggcg agatgggcta tatcaccgcc gccatcaaaa
      961 ccgtggcgga ctgcaatgtc ggcgacacca tcaccgagga ccgccgcccg gcgccggagc
     1021 ctttgcccgg cttcaagccc tccatccccg tggtgtggtg cggcctgttc cccgtggatg
     1081 ccgatgattt cgagaaattg cgcgagagcc tggctaaatt gcgcctcaat gatgccagtt
     1141 tccattatga ggcggagacg tcggctgcgc tcggcttcgg cttccgctgc ggcttcctcg
     1201 ggctgctgca cctggaaatt atccaggagc ggctgtcccg cgagttcgac cttaatctga
     1261 tcgcgacggc tccctcggtg gtctaccata tctataagac caacggggaa atggagccgc
     1321 tgcacaaccc ggccgacatg ccggacggct cgatcatcga ccatatcgag gagccctgga
     1381 tcaaggccac catcatggtg ccggatgatt atctgggctc gatcctcacc ctctgctccg
     1441 agcggcgcgg ccagcagcag gacctcacct atgtcggcaa ccgcgccatg gccgtgtacc
     1501 gcctgccgct caacgaagtg gtgttcgatt tctatgaccg gttgaaatcg gtgagccgcg
     1561 gctatgccag cttcgactac cagctggagg attatgccga ggccgacctc gtgaaaatct
     1621 ccatcctggt caaccaggag ccggtggacg cgctctcctt catcgcccat cgcagccagg
     1681 cggagacgcg cgggcgggcc atctgcggga aactcaaaga ccttatcccc aagcagctct
     1741 tcaagatcgc catccaggcc gccattggcg ggcgcgtcat cgcccgtgag accatctcgg
     1801 ccctgtccaa ggacgtgacg gcgaaatgct atggcggcga catcagccgc aagcgcaagc
     1861 tcctggagaa gcagaaagag ggcaagaagc gcatgcgcca gttcggcaag gtggaaatcc
     1921 cgcaaagcgc cttcctcgcc gcgctgaaga tggacgccta aagggtgcca gccccccttg
     1981 tttgccgcgc gcgcttgcct taaggaggcc gcctgcgctg gagagatggc cgagcggctt
     2041 aaggcgcacg cttggaaagc gtgtgtacgt taacagcgta ccgtgggttc gaatcccact
     2101 ccctccgcca ccaccctagg cattctgcgg gtttccgggc cgtccccggg ttt
//
LOCUS       DASQCV010000185         2147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_867519, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000185 DASQCV010000000
VERSION     DASQCV010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_867519"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..1752
                     /locus_tag="VEQ16_02865"
     CDS             199..1752
                     /locus_tag="VEQ16_02865"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HYP62798.1"
                     /translation="MLPVHLQPESHVPLYIQLRDQLRALVHAGDLRPGDRIPASRELA
                     TILGVHRTTVANAYAELEAEGLIQGHVGRGTFIQGNGNGHALRFTPPPPSLAGNGEGG
                     LRWELLFADERGEEILSRLTASAPDDALSFVMARPASDFFPIEELQMCVNAVLRREAT
                     DVLNLGSSDGYAPLKEALLDMLRQDGVAAKDENLLVTGGCQQALDLISKAFVRPSDCV
                     VMENPTYPGAVAIFHGARARCLGVPVNTHPEPGKPIGLDLEALEATLAANRVKLIVLT
                     PDFHNPTGTSMPLASRRKLLELASRHQVPVVEDHIYGRLHAREERLPSLKQLDRSNVV
                     IHIDSFAKVAFPGLRVGWIVAPAAAIERLRLVKQTTDLHTDQLAQATLAEFLRRGYFA
                     KHLTRMRKVYASRLDALDEALRKHMPEETRWERPDGGMCLWLELPPGFDASELLIHAK
                     ERGLLFAPGRYFYVQSPLPNTLRLGFANLDEKELARGAATLAELLRVEMRKRQRGVRR
                     AERSRVALV"
     gene            1826..>2147
                     /locus_tag="VEQ16_02870"
     CDS             1826..>2147
                     /locus_tag="VEQ16_02870"
                     /inference="COORDINATES: protein motif:HMM:NF015048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog domain-containing protein"
                     /protein_id="HYP62799.1"
                     /translation="MLEPNPSNHCFGCGGANEFGMKLAFELDQEARRSSGKFVLGPRY
                     AGGAGFAHGGIIAVLLDEAMGKISKLTEERAVTAELNIEYRKPVPVDAEIVVSGWQED
                     AQGRN"
BASE COUNT          399 a          631 c          737 g          380 t
ORIGIN      
        1 cagaagaccg aggacccgga gtccgacccg gtgccggttc ccgattccga atccgattcc
       61 gaagaaaatt gagccgcggg gcgcggtcgg cgccggcccg agggcgccgc gggttgaaat
      121 ccgcccgaaa accgcaaaag acaaaacggc tcttgtatca gtccaatatc tgctagaatt
      181 ggctcccggt gggagacaat gcttcccgta catttgcaac ctgaaagcca cgttccccta
      241 tatatccaac tgcgcgatca acttcgcgcg ctggtgcacg cgggcgacct gcgtcccgga
      301 gatcgcattc cggccagccg cgagctggcg accattctgg gcgtgcaccg caccacggtg
      361 gccaatgcct atgcggagct cgaagccgag gggctgatcc agggccacgt cggccgcggc
      421 acgtttattc aaggcaatgg caatgggcac gcgctgcggt ttaccccgcc gccgccctcg
      481 ctggcgggaa acggcgaagg aggattgcgc tgggagctgc tgtttgctga cgagcggggc
      541 gaggagattt tgagccggct gacggccagc gcgcccgatg atgcgctgtc ttttgtgatg
      601 gcgcgcccgg cttcggactt cttccccatt gaagagctgc agatgtgcgt gaacgcagtg
      661 ctgcggcgcg aagcgaccga tgttctcaat ctgggctctt cagatggcta cgctccgctc
      721 aaagaagcat tgctcgacat gctgcgccag gacggtgtgg ccgccaagga tgaaaatctg
      781 ctggtgaccg gaggctgcca gcaggcgctg gacctgatca gcaaggcgtt tgtgcgtccc
      841 tccgactgcg tggtgatgga gaatccgacc taccccggcg ccgtggcgat ctttcatgga
      901 gcgcgcgccc gctgtctggg cgtgcccgtg aacacgcatc ccgagccggg caagccgatt
      961 ggcttggatc tcgaggcgct cgaagcgaca ctggcggcca accgcgtaaa gctcatagtg
     1021 ctgacaccgg acttccacaa tcccaccggg acgtccatgc cgctggcttc gcgtcgcaaa
     1081 ctgttggagc tggcgtcgcg gcatcaagtg ccggtggtgg aggatcacat ttacgggcgg
     1141 ctccatgcgc gcgaggagcg tctgccgtcg ctgaaacagc tcgatcgttc gaatgtagtg
     1201 atacacatcg acagcttcgc aaaggtggcg ttcccggggc tgcgagtggg ctggatcgtg
     1261 gctccggcgg cggcgatcga gcggcttcgc ctggtcaagc agactacgga cctgcacacc
     1321 gaccagctgg cgcaagccac gctggcggaa tttctgcgcc gcggttattt tgcgaagcat
     1381 ctgaccagaa tgaggaaggt ttatgcttcg cgcctcgacg cgctggacga ggcgctgcgc
     1441 aagcacatgc ccgaggagac acgctgggag cgtcccgacg gcggcatgtg cttgtggctg
     1501 gagctgccgc ccggctttga tgccagcgaa ctgctgattc acgccaaaga gcgcggtctg
     1561 ctgttcgcgc cggggcggta tttctacgtg cagtcgccgc tgccgaacac cctgcggctg
     1621 ggctttgcga atctggatga gaaggaactg gcgcgaggcg cggcgacgct ggcggaattg
     1681 ctgcgcgtcg agatgcgcaa gcggcagcgc ggcgtgcggc gggccgagcg aagccgcgta
     1741 gcactggtct gagcggcgga agagacgaga aattggcgcg gctggccgcg ggaaaatcgc
     1801 aaaggtaagc atggctgcga aacaagtgct cgaacccaac ccgtcgaacc attgttttgg
     1861 ctgcggcgga gccaacgagt ttggcatgaa gctggcgttc gagttggatc aggaagcgcg
     1921 ccgttcgagc ggtaagttcg tgctggggcc gcgttatgcc ggcggtgcgg gcttcgcgca
     1981 cggcggcatc atcgccgtgc tgctcgacga agccatgggg aaaatctcta agctgaccga
     2041 ggaacgtgcg gtcacggcgg agttgaacat cgagtaccgc aagccggtgc ccgtggatgc
     2101 ggagatcgtg gtttccggct ggcaggagga tgcgcaaggc cgcaacc
//
LOCUS       DASQCV010000186         2286 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1530649, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000186 DASQCV010000000
VERSION     DASQCV010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1530649"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..948
                     /locus_tag="VEQ16_02875"
     CDS             <1..948
                     /locus_tag="VEQ16_02875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HYP62800.1"
                     /translation="ATDTGINISASWLDRNVFHRAETLTLTATANGLGGTGTTAPGYD
                     LKAVFAKPDYFARGQVLSLSAEALKESLTAYDRTGILLGAALSRPITPHTAITFGPSF
                     SSMRVTQQGVTRTYVLLQFPIAFTFSNTDSLLVPTRGVNFALTLTPSVPVVGTTQPFI
                     ILQGRVSTYVPVEKDARGVFAVRLIVGSIQGATTFQVPPDQRFYAGGSGTVRGYTYQT
                     IGPLFPDDTPIGGMAMDAVNLEFRQRVWGNIGVVPFVDAGQVSSSSAPFTGTLRVGAG
                     LGLRYYTGIGPIRADIAFPLTRVAGSNAFALYIGLGEAF"
     gene            951..>2286
                     /locus_tag="VEQ16_02880"
     CDS             951..>2286
                     /locus_tag="VEQ16_02880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62801.1"
                     /translation="MRRILLILLGLIIAVPVLLVLAVGGVWVALNTEQGRAFVVREVN
                     RLAGPMVKIEGLGGHFPADLRLADVQIADADGVWLHGAGLELRWRPLQLLHGEAHVQD
                     LTAQEIDVLRAPAPSGKSSNQSSGNFKLPLRVTLDRLDVGALTLGPSLAGQALALHVQ
                     GSGYFHAENEAGITLAATTPDGAAQYQLAAALAAQTVDLKLHVVEPEGGFTGHFAGPQ
                     AQGAVRVDMTLSGPRDNAALNFALALGAAQLQGHGTLGLEAPRQFADVTAIVPELAPI
                     GALAGTSMAGSTQLHFHLAQAENGAASLALDGFVALTQAPSGLQNFLGPRDEISLQAS
                     LLNSVLTIEKLHLSGADFALQLDGKASQQSIALTTDAKINQLTPLAPPLTGNVAGSGT
                     VSGKLKDLTVQAKLTGKAGAKGQPSGPFDVELNVQHLPSAPTGTLTGTGMLAN"
BASE COUNT          367 a          733 c          776 g          410 t
ORIGIN      
        1 gccaccgata cgggcatcaa tatcagcgcc tcctggctgg accgcaatgt gttccaccgc
       61 gccgagacgc tcaccctcac cgccacggcg aacgggctgg gcggcaccgg caccacagca
      121 cctggctatg atctgaaggc ggtgttcgca aagccggatt attttgcgcg cgggcaggtg
      181 ctgagcctct ctgcggaggc gctgaaggaa tcgctcaccg cctatgaccg caccggcatt
      241 ctgctggggg cggccttgtc gcggcccatc acgccgcaca ccgccatcac cttcggtccc
      301 agtttctcct ccatgcgcgt gacgcagcag ggcgtgaccc gcacctatgt gctgctgcaa
      361 tttcccattg cttttacctt cagcaacacg gacagcctgc tggtgccgac gcgcggggtg
      421 aatttcgccc tcaccctcac cccctccgtg cccgtggtgg gcaccacgca gcctttcatc
      481 atcctgcagg ggcgcgtctc cacctatgtg ccggtggaaa aggatgcgcg tggcgtgttc
      541 gccgtgcggc tcatcgtcgg ctccatccag ggtgccacca ccttccaggt accgcccgac
      601 cagcgcttct atgccggcgg ctcgggcacg gtgcgcggct atacctacca gaccatcggg
      661 ccgctttttc ccgatgacac gccgatcggc ggcatggcga tggatgcggt gaatctggaa
      721 ttccgccaga gggtatgggg taatatcggc gtggtgccgt ttgtcgatgc cgggcaggta
      781 agcagctcca gcgcgccttt caccggcacg ctgcgtgtgg gcgcggggct cgggctacgc
      841 tattataccg gcatcgggcc gatccgcgcg gatatcgcct ttccgctcac gcgcgtggcg
      901 ggaagcaacg cgttcgcgct ctatatcggc ctgggcgagg cgttttagcg atgcggcgga
      961 tattgcttat cctcctcgga ctcatcatcg ctgtgccggt gctgctggtg ctggcggtgg
     1021 gcggggtgtg ggtggcgctg aacacggagc agggccgcgc tttcgtggtg cgcgaggtga
     1081 acaggctggc cgggccgatg gtgaagatcg aagggttggg cggacatttt ccagccgacc
     1141 tcaggctcgc tgatgtgcag attgccgatg cggacggggt gtggctgcat ggcgccgggc
     1201 tggaattgcg ctggcggccg ctgcaacttc tgcatggcga ggcgcatgtg caggacttaa
     1261 ccgcgcagga gatcgacgtg ctgcgcgccc ctgctccgag cggcaaaagc agcaaccaaa
     1321 gcagcggtaa ttttaagctc ccgctgcgcg tgacgctcga ccggctggat gtcggcgcgc
     1381 tcacgctcgg gccctcgctc gccggccagg cgctggcgct gcatgtgcag ggctcgggtt
     1441 atttccatgc cgagaatgag gccggcatca cgcttgccgc caccacgccg gatggcgccg
     1501 cgcaatacca gctcgccgcc gcgctggcgg cgcagactgt ggatttgaag ctgcatgtgg
     1561 tagagccgga gggcgggttc accggccatt ttgccgggcc gcaggcgcaa ggggccgtgc
     1621 gggtggacat gaccctctcc ggcccgcgcg acaatgcggc gctgaatttt gcgctcgcgc
     1681 tgggggcggc gcagctgcag ggccatggga ctctcgggct cgaagcaccg cgccagttcg
     1741 ccgatgtgac ggccattgtg ccggagctgg cgcccatcgg cgcgctggcg ggcacgagca
     1801 tggcgggcag cacgcagttg catttccatc tcgcgcaggc ggagaatggc gccgccagtt
     1861 tggcgctgga cgggttcgtc gctctcaccc aggcgcccag cgggttgcag aatttcctcg
     1921 ggccgcgcga tgagatttcg ctgcaagcca gcctgctcaa cagcgttctc acaattgaga
     1981 aactgcatct gagcggcgcg gatttcgcgc tccaactgga tggcaaggcg agccagcaga
     2041 gcatcgcgct gacgacggac gcaaaaatca accaactcac cccgctcgcc cctcccctca
     2101 caggcaatgt ggcggggagc ggcacagtga gcgggaagct gaaagacctt acggtgcagg
     2161 ccaagctgac cggcaaggcc ggcgccaagg ggcagccttc cgggccgttc gatgtggagc
     2221 tgaatgtgca gcatctgccg agcgcgccca cgggtacgct gacgggcacg gggatgctgg
     2281 ccaatt
//
LOCUS       DASQCV010000187         2340 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_536351, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000187 DASQCV010000000
VERSION     DASQCV010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_536351"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..481)
                     /locus_tag="VEQ16_02885"
     CDS             complement(<1..481)
                     /locus_tag="VEQ16_02885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62802.1"
                     /translation="MEISQKAIIGKDDFLFLGGADSNDLIAHISGDMKIRDTALKILK
                     HNAAILNRLTCPKLLLVVPEAHVVYQDLLPDDIKVSEDRPIMQALPILGEAAVYPLQK
                     LRNLRAKGVCVYTGHDSHWTETAAFETYISLRHKLNMTGKFKYFYEPSPSREARDLRT
                     "
     gene            complement(686..>2340)
                     /gene="shc"
                     /locus_tag="VEQ16_02890"
     CDS             complement(686..>2340)
                     /gene="shc"
                     /locus_tag="VEQ16_02890"
                     /EC_number="5.4.99.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR01507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051007 - squalene-hopene cyclase activity
                     [Evidence IEA];
                     GO_process: GO:0019746 - hopanoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="squalene--hopene cyclase"
                     /protein_id="HYP62803.1"
                     /translation="RAEGGLRNIRVFTRYWLAMIGVWPWDAAPNLPPEVIRLPYWIPF
                     NIYHFAQWARATIVPLCVVSARQPVWPLPGGGKLEELFPEGRANFDFYLPNKIAKKFS
                     LEWAFEQLDKGLHWVQRKGLMPGRENAIKLCLEWLIKHQDWDGGWGGIQPPWIYGVIA
                     LFNEGYDLKHPIMQQAWGALDSHWAIERDGGRFIQATDSVVWDTMITLLAQAEAGRDI
                     VQTPSTRKALEWILDAQVLVDGDWSQHTKNTASGGWAFERANVRYPDVDDTAMCVLML
                     ATIRGQSGELRPRIDTAIERAVQWLLGMQCENGGWGAFDKDNNKEIISKIPFCNFGEA
                     LDPPSADVTAHVVEALAKLGMGKNHPAVARALAFLRKEQEPDGSWFGRWGVNYIYGTG
                     AVLPALRAAGEDMAQPWVQKAAEWLKAHQNRDGGWGESCASYMNPAWRGKGDSTPSQT
                     AWALLALMAHDEQAHNSAVLRGLGHLTATQRQDGTWNEPYYTGTGFPGYGAGSRQNLD
                     TPNFAANMQQGEELSRGFMIGYNLYRHYFPLMALGKARYLGR"
BASE COUNT          443 a          674 c          732 g          491 t
ORIGIN      
        1 cggtacgcag atctctggcc tcacgtgatg gcgatggctc atagaaatat ttgaacttgc
       61 cagtcatgtt taacttgtgc cgcaacgaaa tataggtctc gaacgccgcc gtctctgtcc
      121 agtgcgaatc atggccggta taaacacaaa cgcccttcgc tcgcagattg cggagttttt
      181 gtagcgggta aactgctgct tcccccagaa taggcagagc ctgcatgatc gggcggtcct
      241 ccgagacttt gatgtcgtcg ggcagtagat cctggtagac aacatgggct tcgggcacca
      301 ccagcaataa ttttgggcag gttagccgat tcaaaatcgc agcattgtgc tttagaattt
      361 tcagcgccgt gtcccgaatt ttcatgtcac cagaaatatg ggcgatcagg tcgttggagt
      421 ccgctccgcc gaggaataga aaatcatcct taccaataat ggccttttgt gatatttcca
      481 taacgaatcc tgctccagta cattgagcca gcccggctgg cggcctgttc tttcaacgcc
      541 ggcggctaac ctgcttccgc aacgacagaa atagcggcat tttggggaac gggaaatagc
      601 ctcgtcttaa acggctcgtc tcgcgcggaa tttaccacac tcgccatgca aaacagccgc
      661 ggttcgcaag cggcgtcctt gttcgttacc tccccaaata ccgcgctttc cccagagcca
      721 tcagcgggaa ataatgccgg tacaaattat acccaatcat aaacccacgc gataattcct
      781 cgccctgctg catatttgcg gcgaaattcg gggtgtcgag attctggcgt gagccggcgc
      841 cgtagccggg gaagccggtg ccggtgtagt agggttcgtt ccaggtgccg tcctggcgct
      901 gggtggcggt gaggtggccg aggccgcgca gcacagcact gttgtgggcc tgttcgtcat
      961 gcgccatgag ggcgagcagg gcccaggcgg tttgtgaggg tgtactgtcg cctttaccgc
     1021 gccaggccgg gttcatgtag gaggcgcagg attcgcccca gccgccatcc cggttctgat
     1081 gcgctttcag ccattccgcg gctttctgca cccagggttg ggccatgtcc tcgccggcgg
     1141 cgcgcaaggc gggcaggacg gcgccggtgc cgtagatata gttcacgccc cagcggccga
     1201 accagctgcc atcgggctcc tgctccttgc gcaagaaggc gagggcgcgg gccacggccg
     1261 gatggttttt gcccatgccg agcttggcta gcgcctcgac gacatgggcc gtgacgtcgg
     1321 cgcttggcgg gtcgagcgcc tcgccgaaat tgcagaaggg gattttggag atgatttcct
     1381 tgttattatc cttgtcgaac gcgccccagc cgccattctc gcattgcatg cccagcagcc
     1441 attgcacggc gcgctcgatg gctgtgtcga tccgcgggcg cagctcgccg gattggccgc
     1501 ggatggtggc gagcatcagc acgcacatgg cggtatcgtc cacatccggg tagcggacat
     1561 tggcgcgctc gaaggcccag ccgccggagg cggtgttctt ggtgtgttga gaccagtcgc
     1621 cgtccaccaa tacctgtgcg tccagtatcc attccagcgc cttgcgggtg ctgggcgtct
     1681 gtacgatatc gcgcccggcc tcggcctggg cgaggagggt gatcatcgtg tcccacacca
     1741 cggaatcggt cgcctggatg aagcggccgc cgtcgcgttc gatggcccag tgcgaatcga
     1801 gcgcgcccca ggcttgctgc atgatgggat gtttgaggtc gtagccctcg ttgaagaggg
     1861 cgatgacgcc atagatccag ggcggctgga tgccgcccca gccaccgtcc cagtcctggt
     1921 gctttatgag ccattccagg cagagtttta tggcattctc gcggccgggc atgaggcctt
     1981 tgcgctgtac ccagtgcagg cctttgtcca gctgctcgaa ggcccattcc agcgagaatt
     2041 ttttagcaat cttgttgggc agataaaaat cgaaattggc gcggccttca gggaacagct
     2101 cctcaagctt gccgccgccg ggcaagggcc agacgggctg gcgggcggag acgacacaga
     2161 gcggcacgat ggtggcacgg gcccattgcg cgaaatgata gatattgaag gggatccagt
     2221 agggcaggcg gattacttcg ggcggcaggt tgggggcggc atcccagggc cagacgccga
     2281 tcatggccag ccagtagcgg gtgaagacac ggatatttcg taagccacct tcggcgcgaa
//
LOCUS       DASQCV010000188         1748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2027613, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000188 DASQCV010000000
VERSION     DASQCV010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2027613"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            250..1452
                     /gene="gltS"
                     /locus_tag="VEQ16_02895"
     CDS             250..1452
                     /gene="gltS"
                     /locus_tag="VEQ16_02895"
                     /inference="COORDINATES: protein motif:HMM:TIGR00210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015501 - glutamate:sodium symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015813 - L-glutamate transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HYP62804.1"
                     /translation="MTQVDVPGFLTITIAILVFFAGSRLNQVIPALRQWNIPEAVTGG
                     LLASLVTLAIHQFFRLEIGFATRARDLLLLYFFTGIGLNARVADLLTGGRSLATLLAA
                     TIGFLIIQNLIATGAAAALGLPGGLRIFLGSASLIGGHGTTIAWAPVVAQKYGLTNAM
                     EIGIAAATLGLVIASLTGGPIARYLITRNGLGSTAADELMMSLPDATPLQAADLSHVG
                     VMRVLLVLNIVIIIAYCLHGVIAEAGVNIPSFVVCLLTGIVLTNAVPRLAPRILWPAR
                     TRELALISSLSLNIFLAISLMSMQLWALSGLGLVLLLVLAVQTLAAVAYILFVVFPLM
                     GGSYEAAVLAAGFTGISLGSTPTAIANMTAVTKLHGPAPRAFIILPLVSAFFIDIANA
                     VAISLMVR"
BASE COUNT          273 a          490 c          578 g          407 t
ORIGIN      
        1 gagcggcgcc agcagatggg gtgcagcggc catgtcggct atggccatta tcatgagcaa
       61 tatgtgcgct gccccgatgg caagtggcgc ataaaatcca gccggctcag ctatctgcac
      121 atggatgtgt atgggctgga ggcgccgggt ggcggggcgg gccagggcta gaagccagga
      181 ttccgctctt ccccttccgg cattttaccg ttttgatgcg ctccgggcct ggtttttcag
      241 gggggagcga tgacgcaggt tgatgttcca gggttcctga cgatcaccat cgccattctc
      301 gtgtttttcg cgggatcgcg cctcaaccag gtcattccgg cgctgcggca atggaacatc
      361 cccgaagcgg tgacgggcgg cctgctggcc tcgctggtga cgctggctat ccatcagttt
      421 ttccggctcg agattggctt cgcgacgaga gcgcgcgacc tgctgctgct ttatttcttt
      481 accggcatcg gcctgaatgc gcgggttgcg gatctcctca cgggcgggcg cagcctcgcc
      541 accctgctgg ctgccacgat cgggtttctc atcatccaga acctgattgc gacaggtgcc
      601 gccgccgcgc tcgggctgcc gggagggctc aggatctttc tcggctcggc ctcgctgatt
      661 ggcgggcatg gcacgaccat cgcctgggcg ccggtggtgg cgcaaaaata cgggctgacc
      721 aatgccatgg aaatcggcat cgccgcggcc acgctggggc tggtgattgc gagcctcacc
      781 ggcgggccga tcgcacgcta tctgattacc cgcaacgggc tcggcagcac cgcggcggat
      841 gagttgatga tgagcctgcc cgacgcgacg ccgctccagg cggctgattt gtcgcatgtc
      901 ggcgtgatgc gcgtgctgct ggtgctcaac attgtcatca tcatcgctta ttgcctgcat
      961 ggggtcattg cggaggcggg ggtcaatata ccgtctttcg ttgtgtgcct gctcacgggc
     1021 atcgtgttga cgaatgccgt gccgcgcctg gcaccacgca tcctgtggcc ggcgcggacg
     1081 cgcgagctgg cgctgatttc cagcctcagc ctcaatattt ttctcgccat ttcgctgatg
     1141 agtatgcagc tctgggcgct gagcgggctg gggctcgtgc tgctgctggt gctggcggtg
     1201 cagacgctgg cggcggtggc ctatatcctg ttcgtggtgt ttccgctgat ggggggcagc
     1261 tacgaggcgg cggtgctggc ggcggggttt accggcatca gcctgggctc cacgccgacg
     1321 gccattgcca atatgacggc ggtaaccaag ctgcatgggc cggcgccgcg ggcgtttatt
     1381 attttgccgc tggtttcggc gttttttatc gatattgcca atgcggtggc gatttcgctg
     1441 atggtgcggt gagggggttc gttttacggc cgcgcttccg tactgtgccc ggtaaagatg
     1501 gatcgccgcg ctgcgctcgc gatgacggga ttgggccaga gctaaccaat gtttctcggt
     1561 tcgggtgcga ggggatgatc ggtatggatg aaaaaccggc aattgatcgg accaggactg
     1621 acgcaacgct cgctccacat gcttgattac aatttgttga catttttaat ttattgattg
     1681 cacaactttg ctgacatagt ttggccggcc cgattttcac gagaggccag ataaccatgt
     1741 gattaatc
//
LOCUS       DASQCV010000189         3018 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2857873, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000189 DASQCV010000000
VERSION     DASQCV010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3018
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2857873"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..630
                     /locus_tag="VEQ16_02900"
     CDS             <1..630
                     /locus_tag="VEQ16_02900"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HYP62805.1"
                     /translation="IDSDRLTIEGVERLHGAEHTIIPDRIETGTYACAAAITGGDIFL
                     ENARAADLGAVLSILQEAGVVITEQQNGFRVTRANGLHGVDVMTEPFPGFPTDMQAQF
                     MALMAVAEGASMITETIFENRFMHVPELNRMGAKVNVHGSSAIIRGVPKLSGAPVMAT
                     DLRASFSLVLAALAAEGETTIARVYHLDRGYEAVEQKLAGCGAKIERVH"
     gene            644..1066
                     /locus_tag="VEQ16_02905"
     CDS             644..1066
                     /locus_tag="VEQ16_02905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007003227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1810 domain-containing protein"
                     /protein_id="HYP62806.1"
                     /translation="MGDDHELERFVTAQAPVIDSVRAELAAGQKRSHWMWFIFPQIAG
                     LGLSAMSQRYAIANLAEARAYLAHPVLGTRLRDCVRLAMSARRPALSIFGLVDTQKFR
                     SCLTLFALASQEPLFTEALAQFFGGELDPGTMDILARA"
     gene            complement(1205..1669)
                     /locus_tag="VEQ16_02910"
     CDS             complement(1205..1669)
                     /locus_tag="VEQ16_02910"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP62807.1"
                     /translation="MIEIRPARPGEGQALYNVTEAAISGLAVEHYSVAQIAHWMGGRD
                     AAHYEQVIAKGAVRVAEQAGLVVGFVDTELGTLLRLFVRPEMAGQGLGRRLLALGVEA
                     AARDGCVRLEATLNAAPFYARCGFVEVGRSVFQHPLGGLPVEVVNMVLFVPD"
     gene            complement(1662..2000)
                     /locus_tag="VEQ16_02915"
     CDS             complement(1662..2000)
                     /locus_tag="VEQ16_02915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HYP62808.1"
                     /translation="MTSLAAFDRFCRGLPGSNFVVQWGGCHVYKAGPKLVAFSLEGGY
                     VFKATPMGFALLTEQGLARRAPYLRQGYWLYVEQGALPQAELFSYLRESHRLAVASLT
                     RAQRRELGLD"
     gene            complement(1997..>3018)
                     /gene="rnd"
                     /locus_tag="VEQ16_02920"
     CDS             complement(1997..>3018)
                     /gene="rnd"
                     /locus_tag="VEQ16_02920"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019015628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HYP62809.1"
                     /translation="AGAADVAVVDAQAEGMDLAPLGRLLAKPDVVKVFHACRQDVEIF
                     LLLFGAVPANLFDTQVAAMVAGFGDQVGYDSLVAALTGGHIDKTHRFSDWSARPLTKA
                     QIDYAAADVTYLRIVYEKLSAKLQAEGRNGWVAQEMAVLAEPDTYRVDPAKAWERLKL
                     RTNNRRQIALVQAIAAWREREAQRINIPRGRLLKDEQIPEIAALAPDNAEALTRARGI
                     SAGFANGKSGVSLLAAIAEAKGLGEADLPKIERPRDVPRASPALVALLKVLLNAAAEQ
                     NNVAARLVAGSEEIEALALDETAPNPILEGWRREMFGENALRLIRGEIALSAKGKRIK
                     IVELG"
BASE COUNT          599 a         1180 c          758 g          481 t
ORIGIN      
        1 atcgacagcg accggctgac catcgaaggc gtggaacgcc tgcacggcgc ggagcacacc
       61 atcatcccgg accggatcga gaccggcacc tatgcctgcg ccgccgccat caccggcggt
      121 gacatcttcc tcgaaaacgc ccgcgccgcc gatctcggcg ccgtgctttc gatccttcag
      181 gaagccggcg tcgtcatcac cgagcagcaa aacggcttcc gcgtcacccg cgccaacggg
      241 ctgcacggtg tggacgtgat gaccgaaccc ttccccggct tccccacgga catgcaggcc
      301 cagttcatgg ccctcatggc ggtggcagaa ggcgcctcga tgatcactga gaccatcttc
      361 gagaatcgct tcatgcatgt gccggagctc aaccgcatgg gcgccaaggt gaatgtccac
      421 ggctcctccg ccatcatccg cggcgtgccc aaactctccg gcgccccagt catggccact
      481 gacctgcgcg cctccttctc cctggtcctg gccgccctcg ccgccgaagg cgaaaccacc
      541 atcgcgcgcg tgtaccatct cgatcgcggc tacgaggcgg tagaacagaa actcgctggc
      601 tgcggcgcca agatcgaacg cgtgcattaa ggagcgcatg accatgggcg atgaccacga
      661 gctagagcgt ttcgtcaccg cccaggcccc ggtcatcgac agcgtccgcg ccgagctggc
      721 ggcggggcag aaacgcagcc actggatgtg gttcatcttc ccgcagatcg ccggcctcgg
      781 cctgtccgcc atgtcgcaac gctacgccat cgccaatttg gccgaagccc gcgcctatct
      841 cgcccacccg gtgctcggca cccgcctgcg tgactgcgtc cgcctcgcca tgtccgcccg
      901 ccgcccggcc ttgtccatct tcggcctggt cgacacacag aaattccgct cttgcctgac
      961 cctgtttgct ttggcgtccc aagagccgct tttcaccgag gcgctcgccc aatttttcgg
     1021 cggcgagctc gacccaggga ccatggacat attggcaagg gcgtgaggtc ccgcccaaga
     1081 acctttccat gcgcgacgcc ggcgaaaccg gggcaaaagt aaaattccgt gatttttccg
     1141 ctcattttaa cggattttcc ttacccaaat gccggaaaaa tcccggatgt aaggaaaatc
     1201 caggttagtc cggcacaaac agcaccatgt tcaccacctc cactggcaat ccgcccaggg
     1261 gatgctgaaa aaccgaacgc cccacctcca caaaaccaca gcgcgcgtaa aagggcgccg
     1321 cattcaacgt cgcctccagc cgtacgcagc catcccgcgc cgccgcctca acccccaaag
     1381 ccagcaagcg ccgccccagc ccctgccccg ccatctccgg ccgtacgaac aggcgcagca
     1441 aagtcccaag ctccgtatcc acgaatccca caaccagccc ggcttgctcc gccacacgca
     1501 cggcaccctt ggcaatcacc tgctcgtaat gcgccgcatc gcgcccgccc atccaatggg
     1561 caatctgcgc cacgctgtaa tgctccaccg ccaagcccga aatggcggcc tcggtcacat
     1621 tatacagcgc ctgcccctcg cccggccgcg ccgggcggat ctcaatcaag ccccagctcc
     1681 cgccgctgcg cccgcgtcaa cgacgccaca gccagcctgt gagattcccg caaataagaa
     1741 aacagctccg cctgcggcag cgcgccctgc tccacataca gccaataacc ctggcgcaga
     1801 taaggcgccc gcctagccaa accctgctcg gtcaacaacg caaaccccat aggcgtggcc
     1861 ttgaaaacat acccgccctc caaactgaag gcgaccagct tgggccccgc cttgtagaca
     1921 tgacacccgc cccattgcac gacgaaattg ctcccaggca acccccggca aaaacggtcg
     1981 aatgcagcga ggctcgtcat cccagctcga caatctttat tcgcttgccc ttggccgaga
     2041 gcgcaatctc gccccgtatc agccgcagcg cattctcccc gaacatctca cgccgccacc
     2101 cctcaagaat cggattcggc gccgtctcat ccagcgccag cgcctcgatc tcctcagatc
     2161 ccgccaccag ccttgccgcc acattattct gctcggccgc cgcgttcagc agcactttca
     2221 acagcgccac cagggccggc gaggcccgcg gcacatcgcg cggccgctcg atcttcggca
     2281 gatccgcctc gcccaaaccc ttcgcctccg caatcgccgc cagcagcgag acaccggact
     2341 tgccattggc aaacccagcc gaaatccccc gcgcccgcgt cagcgcctcc gcattatccg
     2401 gcgccagagc cgcgatttcc ggtatctgct catccttcag caaccgcccg cgcggaatat
     2461 taatcctctg cgcctcccgc tcacgccaag cggcaatggc ctgcaccagc gcgatctgcc
     2521 gccggttatt ggtgcgcagc ttcagccgct cccaggcttt cgccgggtcc accctgtagg
     2581 tgtcaggctc ggccagcacc gccatctcct gcgccaccca tccattccgc ccctccgcct
     2641 gcagcttggc ggaaagcttc tcatagacaa tgcgcaaata ggtcacatcc gccgcggcat
     2701 aatcaatctg cgccttggtc agcggccgcg ccgaccaatc ggagaatcgg tgcgtcttat
     2761 cgatatgccc gccggtcagg gccgccacca gggaatcata ccccacctgg tcgccaaacc
     2821 ccgccaccat ggccgccacc tgcgtgtcga acaaattagc cggcaccgcc ccgaacagaa
     2881 gcaggaaaat ctccacatcc tggcggcagg catggaacac tttcaccaca tccggcttgg
     2941 ccagcagcct gcccaagggc gccagatcca tcccctcggc ctgcgcatcc accaccgcca
     3001 catccgcagc acccgcca
//
LOCUS       DASQCV010000190         1638 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1033940, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000190 DASQCV010000000
VERSION     DASQCV010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1033940"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(97..1269)
                     /locus_tag="VEQ16_02925"
     CDS             complement(97..1269)
                     /locus_tag="VEQ16_02925"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006635 - fatty acid beta-oxidation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HYP62810.1"
                     /translation="MSSAVIVSAVRTAVGTARKGSLVNTTPEVLAAIVLKEAVKRAGF
                     SPDEVDDIILAESLYGGGAVARYAAVELGWMHVAGMAMNRHCAGSLSAVGLAAGAVLA
                     GMERVIIAGGVNSSSLSPGLTQRDPATGGVIERWFPPTHPDSKEAPNRDMSITVGWNA
                     AQEAGLTREELDAWALRSHQRAIAASDAGHFVGEIVPVRVRNAEGVEFDFKVDEHPRR
                     DTTMEKLAGLKVLHPEIPGFSITAGNASGSNDAASALVVTTDDIAKAEGKTIQAKILG
                     WTSLGIDPRRTGASVPPTVQKLLKRTGVALKDIKLWEINEAFASVPLVACRVLGLDEE
                     TVNVSGSGCSIGHPIGASGGRMLTTLINDLKRRGGGLGIATMCAGGGQAGAVLIEV"
BASE COUNT          289 a          549 c          521 g          279 t
ORIGIN      
        1 cctggacact gcattagcaa agtgacgcaa tgccgcaagg ggccggacgg caattgtccg
       61 gtccttttca atgcggctgc aggcaatacc ggggtgtcag acctcgatga gcacggcgcc
      121 ggcctggccg ccgcccgcgc acatggtggc aatgccaagc ccgccgccgc ggcgcttgag
      181 gtcgttgatg agggtggtga gcatgcgccc gcccgaggcg ccgatgggat ggccgatgga
      241 gcaaccgctc cccgagacat tcaccgtctc ctcatccagc cccagtacgc ggcaggcgac
      301 cagaggcacg gaggcaaaag cctcgttgat ctcccacagt ttgatgtcct tcagcgccac
      361 cccggtgcgc ttgagcagct tctgcaccgt aggcggcacg gaggcgccgg tgcggcgcgg
      421 gtcgatgcca agcgaggtcc agccgaggat tttggcctgg atggttttgc cttccgcctt
      481 ggcgatgtca tccgtcgtca ccaccagcgc ggaggcggcg tcgttggagc ccgaggcatt
      541 gccggcggtg atggagaagc caggaatctc cgggtgcagt actttcaacc cggccagctt
      601 ttccatggtg gtatcgcggc gcggatgctc gtccaccttg aagtcgaatt ccacaccctc
      661 ggcgttccgt acacgcacgg gcacgatctc ccccacgaaa tgcccggcat cgctggcggc
      721 gatggcgcgc tggtgcgagc gcagggccca ggcatccagt tcctcgcgcg tcagcccggc
      781 ttcctgggcg gcattccagc ccacggtgat ggacatgtcg cggttcggtg cctccttgct
      841 gtccggatga gtgggcggga accaacgctc gatcaccccg ccggtggccg ggtcccgctg
      901 ggtgagaccg ggggacaagg agctggaatt gacgccgccg gcgatgatca cgcgctccat
      961 gccggccagc acggcgccgg cggccaggcc cacggcgctt agcgacccgg cgcaatggcg
     1021 gttcatggcc atgccggcca catgcatcca gcccagctcc acggccgcat agcgcgccac
     1081 ggcgccgccg ccataaaggg attcggccag gatgatgtcg tccacctcat ccggggagaa
     1141 gccagcgcgc ttgaccgctt ccttcagtac aatggcggcc agcacttccg gcgtggtgtt
     1201 gacgagcgag cccttgcggg cggtgcccac cgcggtgcgg acggcgctga cgatgacagc
     1261 agaggacatg cggttttctc ccggtttttt agagactatt tgcaaactct actctggcgg
     1321 ccgcctggcg gtgattttct gcgctccggt gctcacgtac tgatgtacgc tccgctccgg
     1381 tgctcaaaaa tcaccgccat gcgactcacc agagcgagtt ttcaaacagt ctcttagtga
     1441 aaagcggcgc aatctggcac gcgggccggc ggttggtaag accgggagac aaatacatcg
     1501 ccggggcaga actacgcagc cgtcaccggc acgtgctccg ccaaaaaccc aaacacagcc
     1561 tcgctgaaag cgtcattggc atcacccgcc accatatggt cggcccccgc cacatccacg
     1621 aattccgccc ccggcacc
//
LOCUS       DASQCV010000191         1747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1697829, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000191 DASQCV010000000
VERSION     DASQCV010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1747
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1697829"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..983
                     /locus_tag="VEQ16_02930"
     CDS             <1..983
                     /locus_tag="VEQ16_02930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HYP62811.1"
                     /translation="DELPFAPCPILDIDVTDGKVGKKPSALKLHFDHRTVGDAFGWII
                     EARSIRVALNKQLHAAENVLVRAPALARIERHAEGADVHVGDETFRVQLVVAAEGRKS
                     PLREQARIGVTKLPYHQTAVIFAIAHEKPHEGVALEHFLPGGPFAVLPMTGTAEHPHL
                     SAVVFTERDALAQRLYGMEDGPFMREVQARLGNRLGAVQQVGRRWMHRLEAMYAHRYY
                     DTRLVLVGDAAHGVHPIAGQGLNLGLQDAAALVEILEGAADAGAPSLLARYQAARRPV
                     NMAMLLGMDALDRLFSTNLAPVRLVRDLGLAMVDRMPRLKRRFMLTAMGR"
     gene            complement(1129..1554)
                     /locus_tag="VEQ16_02935"
     CDS             complement(1129..1554)
                     /locus_tag="VEQ16_02935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HYP62812.1"
                     /translation="MKTFALETGKSGVILLARFLLALLFLIFGWNKLTGFHGAITYMQ
                     ATGAPVPVISALIATIVELLGGLFVLLGIFTRPIAVLFALYAIVTAYIGHPYWTMTGL
                     PQFEAEINFYKNVAIAGGFLLLYVTGSGRFAVDALINRR"
BASE COUNT          329 a          515 c          596 g          307 t
ORIGIN      
        1 gggacgagct gcccttcgcc ccctgcccca tcctcgatat tgacgtcacg gacggcaaag
       61 tgggaaaaaa accgtcagcg ctgaaactgc atttcgatca tcgcacggtg ggggatgcgt
      121 tcggctggat catagaggcg cgctccatcc gcgtggcgct gaacaagcag ctgcatgcgg
      181 cggagaatgt cctggttcgc gcgccggcgc tggcccgtat tgagcgtcat gcggagggtg
      241 ctgatgtgca tgtcggcgat gagaccttcc gggtgcagct ggtggtggcg gcggaggggc
      301 gcaaatcgcc tttgcgcgag caggccagga tcggtgtgac gaaactgccc tatcaccaga
      361 cggcggtgat tttcgccatc gcccatgaaa agccgcatga gggcgtggcg ctggagcatt
      421 tcctgcccgg cggccccttt gccgtgctgc ccatgaccgg cacggcggag caccctcacc
      481 tctcggccgt ggtgttcacc gagcgcgatg cgctggcgca gcgcctctat gggatggagg
      541 acggcccctt catgcgcgag gtgcaggcgc gcctcggcaa taggctgggc gcggtgcagc
      601 aagtgggacg gcgctggatg catcgtctgg aggccatgta tgcgcaccgt tactacgaca
      661 cccgcctggt gctggtgggc gacgcggcgc acggggtgca tcccattgcc ggccagggtc
      721 tgaatctcgg gctgcaggat gcggcagcgc tggtggagat tctcgaaggc gccgcggatg
      781 cgggcgcgcc gtctttgctg gcgcgctacc aggcggcacg gcggccggtg aatatggcca
      841 tgctgctcgg catggatgcg ctggaccggc tcttctccac caatctcgcg ccggtgcgtc
      901 tcgtgcgcga tctcggcctc gccatggtgg acaggatgcc acgcctcaaa cgccgcttca
      961 tgctcacggc aatgggacgc taagaggctg tttcagaagt cgctctggtg agtcgtcaag
     1021 tggtgatttt tgagcaccgg cgcggagcgt actacagtac gtgagcaccg gagcgcagga
     1081 aatcgccgct tggcggccgc cagagtagac ttatgaaaca gcctctgatc aacgccggtt
     1141 gattagcgca tccaccgcga agcggccgga gccggtgacg tagagaagca aaaacccgcc
     1201 ggcgatggcg acattcttgt agaaattaat ctcggcctcg aactggggca gaccggtcat
     1261 ggtccaatag ggatggccaa tataggccgt gacgatggca tagagcgcga acagcacggc
     1321 gatggggcgg gtgaaaatcc caagcaggac gaagagcccg cccaataatt ccacgatggt
     1381 ggcaatcagg gcgctgatca ccgggacggg cgcgcccgtc gcctgcatat aggtgatggc
     1441 gccgtggaac cctgtcagct tgttccagcc gaagatgagg aacagcaggg ccaggaggaa
     1501 gcgggcaagg aggatgaccc cgctcttgcc tgtctcaagt gcgaaagttt tcatgacgat
     1561 actcccgtac gatttacagg cggtgcgcgg accgcgcccc caaagcctca ttccgttaca
     1621 tgttggaacc ggcttgacct ttgcaagggg catcagccgg cgcgcgtcaa ctccgcccgc
     1681 agcaccccgt cctggccgag atagcgcggc gagatatagg cggcggcgcg aaattccggg
     1741 tcggcat
//
LOCUS       DASQCV010000192         9748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1863690, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000192 DASQCV010000000
VERSION     DASQCV010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 9748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9748
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1863690"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2563
                     /locus_tag="VEQ16_02940"
     CDS             <1..2563
                     /locus_tag="VEQ16_02940"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HYP62813.1"
                     /translation="ALTRDHAHATKLVADAEAARTRLEQEQHRLLEETVSAPAELEQA
                     GQAEDAALEAMREAEAETHRATEEAARIAAESEAARRALAEAEQRARRTSLRAAEAAA
                     EYQKIAATLVPPERVAEAEAARAAAETALLAAREAVTAAEAARVQAEEEAAKARAEAE
                     TALAAARAKTSAADAAATKIATEYDALAALLAQKFGRETAPILDQISVPPGLEAALGA
                     ALREELSASSDTQAPRHWRKLPDLDLSVVPLKSFANLVQGPEALKRALSHILLLPEGA
                     DGDLHQGNLTPGQILVSREGAVWRWDGYTVRAGAASEAAVRLKQRNRLAELERERNAT
                     REAAAAARKEREGAEIAEREARANEVKIRETRRAAETAARDTRRVAEQQFDKTRNEAI
                     RLTAEAERGASRAAAAETQRDQTAAEAAEADAALAAVRAQAADIPDVTVARAMVDKAR
                     SALTVARQAESAARTRFSALKAADAQRNLRLETLEREMEDWSERGLDAADRLADLTAR
                     LGESQEAIGALLAAPDEAAAARREALDNLNNIEGEHKRAAITLDNAQKAAESAARAAR
                     AAESAVSGAREARAREEGNITAANHAWGTVAERILERLGANPALPDPPAELNAESEDK
                     ARKRWERLTREREEMGPVNLRAEIEVGEAEEAIATIDRERDEITSAIAKLRGSIGHLN
                     REGRERLSVVFAEVDKHFQTLFSRMFGGGKAHLALVGSEDPLEAGLEIYAQPPGKKLS
                     TLSLLSGGEQALTALSLIFAVFKCNPAPISVLDEVDAPLDDANVERFCTLLEDMVRET
                     GTRFLVVTHHHLTMARMDRLYGVTMQERGVSRLLSVDFSRAVEMVDPGHSVMAAE"
     gene            complement(2783..3010)
                     /locus_tag="VEQ16_02945"
     CDS             complement(2783..3010)
                     /locus_tag="VEQ16_02945"
                     /inference="COORDINATES: protein motif:HMM:NF018294.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1127 domain-containing protein"
                     /protein_id="HYP62814.1"
                     /translation="MSSTIKNQATLSRVGALVFARQTPYVAAERHASLLNNFRSWRER
                     REAEAELSALSDRSLEDIGLRREDIPRVVRG"
     gene            3183..4940
                     /locus_tag="VEQ16_02950"
     CDS             3183..4940
                     /locus_tag="VEQ16_02950"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012812813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HYP62815.1"
                     /translation="MSSVHSQKLALLRGVLAREELDGFIIPRADEHLGEYVPPNAERL
                     AFLTGFTGSAGLAVVLRGKAAVFSDGRYTLQLERETDPALWERRHIIEDKPEDWLCAN
                     AAGQRIGYDPWLISPDGLKRFTGVELVPVAHNPVDEIWTDRPALPLAPAVPHGKAFAG
                     ESSVAKRARLAEMLRAAGQDAAILTDPASLAWLFNIRGADLEFCPFALGYALLNDDAT
                     ATLFMAAQKLTPELLAHLGPDITVEERDALPGALAALKGKTVRYDPASMPAWFETALR
                     EAGAKIAEAPDPVALPRACKNETEQNGTRAAHLRDGVAMVNFFHWLSTAKGQTELSAS
                     VKLREFRADGAKFRGESFPAISGAGEDGAIIHYRVTEETDRPIRANEVYLIDSGGQYL
                     DGTTDVTRTIWTGPDEAPEEIKENVTRVLAGHIALARAVFPEGVTGAHLDAFARQELW
                     RAGLDYDHGTGHGVGSYLSVHEGPAGISRAAKPVPLQPGMILSNEPGFYLPGAYGVRL
                     ENLMLVQPADFPEARKKFLGFETLTLVPFDRALIEPELLSSDALTWLNAYHTRVEDEL
                     MPHVTAAAREWLHKACAPL"
     gene            5055..5588
                     /gene="thpR"
                     /locus_tag="VEQ16_02955"
     CDS             5055..5588
                     /gene="thpR"
                     /locus_tag="VEQ16_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HYP62816.1"
                     /translation="MRLFVALDLPWEIKEELSDLSCPIPGARWVPTDNFHLTLRFIGE
                     ANRLQAEEIDCALAALRGRSFSFSLSGLGWFEKYGRVNTLYVGVERNEDLARLQGKVE
                     TALLRAGVQPERRKFTPHVTLARMDQPVTPELTRFVQANNLYRSEPIRADNVTLFSSF
                     LGKDQPTYTPEAEYALG"
     gene            complement(5601..6386)
                     /locus_tag="VEQ16_02960"
     CDS             complement(5601..6386)
                     /locus_tag="VEQ16_02960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP62817.1"
                     /translation="MPENITPIPALVVEDIHKSFGPLEVLKGVSVTANEHDVIAILGA
                     SGSGKSTFLRCINMLEMPDKGRVSVKGELIEMVEGKKSRACANPKQLERLRSRLSMVF
                     QQFNLWAHMTVLQNVIEAPIHVLKLDRKTAIARAEAMLEKVGLANKLSSYPAQLSGGQ
                     QQRVAIARALAMEPDVLLFDEPTSALDPELVGEVLKVMCDLAKEGRTMLVVTHEMGFA
                     REVASRVMFLHKGCTEEEGEPEQMFTNPQSARFKQFLSSTLRH"
     regulatory      6482..6584
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            6752..7801
                     /gene="gcvT"
                     /locus_tag="VEQ16_02965"
     CDS             6752..7801
                     /gene="gcvT"
                     /locus_tag="VEQ16_02965"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019461336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HYP62818.1"
                     /translation="MQKTPLDALHRRLGARMVEFAGYEMPLQYQGIIAEHQACRTGAA
                     LFDVSHMGQVEIADVAGFERLVPGDISGLKPGRQRYSLLLNEAGGIIDDLMVANLGPR
                     LQAVLNAGRKLVDVAHMRVQGLEVTTRFDRALIAIQGPKAVDIVPEAASLKFMDAATL
                     DVAGIPCIVTRSGYTGEDGFEIGCPGDAGEALAEALLARGAVPAGLGARDSLRLEAGL
                     CLYGNDIGEETSPVAAQLNFALSKKRLAAGDFIGAAIVNRQLKDGTAKLLVGIRLDGR
                     APARAGAIIQAKGERVGVVTSGCFAPTLEAPIALGYVDAAFARPGTKLDLIVRDKPLA
                     GIVAALPFVPHNYVR"
     gene            7815..8195
                     /gene="gcvH"
                     /locus_tag="VEQ16_02970"
     CDS             7815..8195
                     /gene="gcvH"
                     /locus_tag="VEQ16_02970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HYP62819.1"
                     /translation="MAQVFFSKDHEWISLGDDGLAIVGITDHAQNALGDIVFVELPEP
                     GRNVATGEACAVVESVKAASDIYAPLSGTVAEVNQAIVDEPGLVNSGAEGNGWFFKLR
                     LEDVAAVSSLMDRAAYDEYLSTLA"
     gene            8192..>9748
                     /locus_tag="VEQ16_02975"
     CDS             8192..>9748
                     /locus_tag="VEQ16_02975"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007003188.1"
                     /note="acts in conjunction with GvcH to form
                     H-protein-S-aminomethyldihydrolipoyllysine from glycine;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine dehydrogenase
                     (aminomethyl-transferring)"
                     /protein_id="HYP62820.1"
                     /translation="MSALDQLAALEQADAFAARHIGPRGAELAAMLKIVNAASLDDLI
                     AQTVPESIRANAGLALPAPLTEAAVLEELRGLAALNTVKKSLIGLGYHGTLTPPVIQR
                     NVLENPGWYTAYTPYQAEISQGRLEAILNFQTMVASLTGLEIANASLLDEATAAAEGV
                     AMAHALHKGGSRTIAIATDVHPQTRAVIATRAWPLGWHIVDVHPGDIEAIAGSKPFAL
                     VLNYPGSTGEVRDLSAEIAAAKTVGAMSIVCADLLALTLLTPPGEMGADIVAGSSQRF
                     GVPMGFGGPHAGYFATRDAFKRAMPGRLVGVSVDAAGRPAMRLALQTREQHIRREKAT
                     SNICTAQVLLAVMAGFYAVWHGPEGLKSIAQRVHLQARLLAAVAHRAGYALRHDSFFD
                     TLAIEAGSKADELMHEALAAGFNLRRIDETGIGIALDETVTRAELEALAGVFGGKLQD
                     EAAAISESLQRRSEFCQEAVFDTHRSEHSMLRYLKRLEDKDIALNRAMIPLGSCTMKL
                     NAAVEMAAITW"
BASE COUNT         1702 a         3121 c         3197 g         1728 t
ORIGIN      
        1 cgccctgacc cgcgaccatg cccatgcgac gaaactggtc gcggatgcgg aggccgccag
       61 gacgcggctg gagcaggagc agcatcggct gctggaggaa accgtgtccg cgccggccga
      121 gctggagcag gcggggcagg ccgaggatgc ggctttggag gctatgcgcg aggcggaagc
      181 cgaaacccat cgtgccacgg aagaggccgc gcgcatcgcc gcggaatccg aggctgcccg
      241 ccgggctctg gcggaagccg agcagcgcgc ccgccgtact tcgctccgcg ctgccgaggc
      301 tgcggccgag taccagaaaa ttgccgccac cctggtgccg cctgagcgtg tggctgaggc
      361 cgaagccgcg cgcgcggcgg ctgagaccgc tttgctggcc gcccgtgaag ccgtgacggc
      421 tgcggaagcg gcgcgtgtgc aggctgagga agaggctgcg aaggcccgtg ccgaggccga
      481 gaccgcgctt gccgcggccc gcgccaagac atccgccgcc gatgccgccg cgacgaagat
      541 tgccaccgaa tatgacgcgc tggcggccct gctggcgcaa aaattcggac gcgagacggc
      601 gccgattctc gaccagattt ctgtgccgcc gggtttggaa gcggccctgg gtgctgcgtt
      661 gcgcgaggag ctgtccgcct cgtccgacac gcaggcaccg cgccattggc gcaagctacc
      721 ggatcttgat ctgtccgtgg tgccgctgaa gagttttgcc aatctcgtgc agggaccgga
      781 ggcgctgaag cgggcgctgt cgcatattct gcttctgccg gaaggggcgg atggcgatct
      841 gcaccagggc aatctcacgc cggggcagat tctcgtctcg cgcgagggtg cggtgtggcg
      901 ctgggatggt tataccgtgc gcgcgggtgc ggcttctgaa gccgctgtgc gccttaagca
      961 gcgcaaccgc ctggccgagc tggagcgcga gcgcaatgcg acgcgagaag ccgccgccgc
     1021 cgcccgcaag gagcgtgagg gcgcggaaat cgccgagcgc gaggcccgcg ccaatgaagt
     1081 caaaattcgc gagacccgcc gtgccgccga gacggccgcg cgcgacaccc gccgtgtggc
     1141 ggagcaacaa ttcgacaaga cccgcaatga ggcgatccgc ctcactgccg aggccgagcg
     1201 tggcgcctcc cgcgcggcgg ccgccgagac gcagcgcgac cagaccgccg ccgaggccgc
     1261 cgaggccgat gccgctctgg ccgccgtccg cgcccaggcg gccgatatcc cggacgtgac
     1321 cgtggcccgc gccatggtgg acaaggcgcg cagcgccctc accgtggcgc gccaggcgga
     1381 atctgccgcc cgcacccggt tctccgccct gaaggcggcc gatgcgcagc gtaatctgcg
     1441 gctggagacg ctggagcggg agatggagga ttggagcgag cgcgggctgg acgccgccga
     1501 ccgcctcgcc gacctcaccg cgcggctggg tgagtcgcag gaagccatcg gcgccctcct
     1561 ggcagcgcca gacgaggctg cagcggcgcg gcgcgaggcg ttggataacc tcaataacat
     1621 cgagggcgag cataagcgcg ccgccatcac gctggataat gcgcagaaag ccgccgaatc
     1681 cgctgcccgc gcggcgcgcg cggctgaatc cgctgttagc ggcgcgcgtg aggcgcgggc
     1741 gcgtgaggaa ggcaacatca ccgccgcgaa ccatgcctgg ggcacggtgg cggagcgcat
     1801 attggagcgc ctcggcgcca accccgctct gcccgaccca ccggcggagc tgaatgcgga
     1861 gtccgaggac aaggcccgta agcgctggga gcggctgacg cgcgagcgcg aggagatggg
     1921 gccggtcaat ctgcgcgcgg aaatcgaggt gggcgaggcc gaggaggcga ttgccaccat
     1981 cgaccgcgag cgcgacgaga ttacctccgc catcgccaaa ttgcgcggct ccatcgggca
     2041 tttgaaccgc gaggggcgcg agcggctttc ggtggtgttc gccgaggtgg acaagcattt
     2101 ccagacgctc ttcagccgca tgtttggcgg cggcaaggcg catctggcgc tggtggggtc
     2161 ggaggacccg ctggaggcgg gattggaaat ttatgcgcag ccgccgggca agaagctcag
     2221 cacattgtcg ctgctttcgg gtggcgagca ggccctgacc gctttgtcgc tgatttttgc
     2281 cgtattcaaa tgcaatccgg cgccgatttc ggtgctggat gaggtggatg cgccgctgga
     2341 tgacgcgaat gtggagcggt tctgcacgtt gctggaggat atggtgcgcg agacggggac
     2401 gcgcttcctg gttgtcacgc accatcacct caccatggcg cggatggacc ggctttatgg
     2461 cgtgacgatg caggagcgcg gtgtttcgcg gctgttgtcc gtcgatttct cgcgcgctgt
     2521 ggaaatggtg gaccccggcc acagcgtgat ggcggcggag taatccccaa gaagaagggg
     2581 cccgaaagcc cccttcttcc gttagaggct gtttcagaag tcgctctggt gagtcgtcaa
     2641 gcggtgattt ttgagcaccg gagcggagcg tacttcagta cgtgagcact gttgcttcac
     2701 gcgctcgaac cagtggcgcg cgctcgcaac cgcagaaaat cgccgcttgg cggccgccag
     2761 agtagactta tgaaacaggc tctcagcccc tgaccacccg gggaatatcc tcccgcctca
     2821 gcccgatatc ctcaaggctg cggtcagaaa gcgctgaaag ttcagcttcc gcctcgcggc
     2881 gctcgcgcca ggagcggaaa ttattgagca gggaagcatg gcgctcagcc gccacatagg
     2941 gcgtctgccg cgcgaaaacc agcgccccaa ccctgctcag ggtggcctga tttttaatcg
     3001 tcgaagacat aatacacctg attaaacttg cgggcggccg tttcactgtg acccagcggc
     3061 acccgccgca aacgcgggct tttgcccagc gctgcgcagt tacgtatact ccaggaggag
     3121 gaattctggg cctgccgcca agcgcggcag acccgcttgg cgcgcatgag aaaaggtaag
     3181 gtatgagttc ggtacatagc caaaaattag cccttttgcg cggcgtgctg gcacgagagg
     3241 agctggacgg cttcatcatc ccccgcgccg acgagcatct gggcgaatat gtgccgccca
     3301 atgccgagcg cctggccttt ctcaccggct tcaccggcag tgccgggctc gccgtcgtgc
     3361 tgcgcggcaa ggcggccgtg ttttccgacg ggcgctatac gctgcaactg gagcgtgaga
     3421 ccgaccccgc tttgtgggag cgccgccata tcatcgagga caagcccgag gattggctgt
     3481 gcgcgaacgc cgcgggccag aggatcggct atgacccctg gctgatcagc ccggacgggc
     3541 tcaagcgctt caccggcgtc gaactcgtgc cggtcgcgca taacccggtg gatgaaatct
     3601 ggaccgaccg tcccgccctg cctttggctc ccgccgtgcc gcacggcaag gcttttgccg
     3661 gcgaaagctc cgtcgccaag cgcgcgcgcc tggcggagat gctacgcgcg gcgggccagg
     3721 acgccgccat cctcaccgac ccggcctctc tggcatggct attcaacata cgcggcgccg
     3781 acctcgaatt ctgccccttc gcgctcggct acgcgctgct caacgacgat gccaccgcca
     3841 cgctcttcat ggcggcgcaa aaactcacgc ccgagctgct ggcgcatctg gggccggata
     3901 tcacagtgga ggagcgcgac gctctgccag gcgcgctggc ggcgcttaag ggcaaaaccg
     3961 tccgctacga ccctgcctcc atgccggcct ggttcgaaac cgccctgcgc gaggctggcg
     4021 ccaaaatcgc cgaggcgccg gacccggttg ccctgccgcg cgcctgtaag aacgaaaccg
     4081 agcagaatgg cacccgtgcc gcgcatttgc gtgatggcgt cgccatggtg aattttttcc
     4141 attggctctc cacagcgaaa ggccagacgg aactttccgc ttccgtgaaa ctgcgtgaat
     4201 ttcgcgccga tggcgcgaag ttccggggcg aaagttttcc ggccatctcc ggcgccggcg
     4261 aggatggcgc catcatccat taccgcgtca ccgaggagac cgatcgtccg atcagggcca
     4321 acgaggtcta tctcatcgat agtggcggcc aatatctcga cggcaccacg gatgtcaccc
     4381 gcacgatttg gaccggcccg gatgaagcgc cggaagagat caaggaaaat gtcacccgcg
     4441 tgctggcagg ccatattgct ttggcccgcg cggtgtttcc ggaaggcgtg accggcgcgc
     4501 atctcgatgc ctttgctcgc caggagctgt ggcgcgcggg gcttgattat gaccatggca
     4561 ctggccatgg cgtcggctcc tatctttccg tgcatgaggg gccggccggt atttcccgcg
     4621 ccgcgaagcc tgtgccgctg cagccaggca tgattctctc caacgagccc ggcttttatc
     4681 tgccgggcgc gtacggcgtg cgcctggaga atttgatgct ggtgcagcct gcggattttc
     4741 ccgaggcgcg gaagaaattc ctgggtttcg agacgcttac cctggtgccg ttcgaccgcg
     4801 ccttgattga gccggagctg ctttcatccg atgcgttgac ctggctcaac gcctatcaca
     4861 cacgggttga ggatgaactc atgccgcatg tcacggcggc ggcccgcgag tggttgcaca
     4921 aggcctgcgc gcccttataa ctccacatac tattgtaaca ttgtattaaa atattaacat
     4981 tgacccggta aaggccaata ctgcagcatt tatatagtcg attcgctgac ctctagcagt
     5041 aaagggcccc gcccatgcgc ctcttcgtcg cgctcgatct cccttgggag atcaaagagg
     5101 aactcagcga cctctcctgt cccataccgg gtgcgcgctg ggtgccgacc gataattttc
     5161 atctcacttt gcgcttcatt ggcgaggcca ataggctgca ggcggaggag attgattgcg
     5221 cgctggccgc cctgcgcggc cgcagcttca gtttttcgct gagcgggctt ggctggttcg
     5281 agaaatatgg gcgtgtgaac acgctttatg tcggtgtcga gcgtaatgag gatctggccc
     5341 ggctgcaggg caaggtggag acagcgttgc tgcgcgccgg ggtgcagccg gagcgccgca
     5401 aattcacgcc ccatgtgacg ctggcgcgca tggaccagcc ggtgacgccg gaactcacgc
     5461 gtttcgtgca ggcgaataat ttgtatcgct ctgagcctat tcgggcggat aatgtgacct
     5521 tgttcagctc gttcctgggc aaggatcagc cgacctacac gccggaagcg gaatacgcgc
     5581 tgggctaacc tccagcccgg ctaatgccgc agcgtgcttg agagaaactg cttgaagcgc
     5641 gccgattgcg ggttggtgaa catctgttcc ggctccccct cctcctcggt gcagcccttg
     5701 tgcaggaaca tcacccggct cgccacctcg cgcgcgaagc ccatctcatg cgtcaccacc
     5761 agcatggtgc gcccctcttt ggccaaatcg cacatcacct tcagcacctc tccgaccagt
     5821 tccgggtcca aggccgaggt cggctcgtcg aacagcagca cgtccggctc catcgccagc
     5881 gcccgcgcaa tcgccacgcg ctgctgctgc ccgccggaga gctgcgccgg ataggaagac
     5941 agcttattcg ccagccccac cttttccagc atcgcctcgg cccgggcgat ggcggtcttg
     6001 cggtccagct tcagcacgtg aatcggcgcc tcgatgacat tttgcagcac cgtcatatgc
     6061 gcccacaggt tgaattgctg gaacaccatg gacagccggg agcgcagccg ctccagctgc
     6121 ttggggttcg cgcaggcccg cgatttcttg ccctcgacca tctcgatgag ctcgcccttg
     6181 accgagacgc ggcctttgtc tggcatctcc aacatattga tacagcgcag aaaagtgctc
     6241 ttgccggagc cggaggcgcc gagaatcgca atcacatcat gctcgttggc cgtgacggaa
     6301 acccccttca gcacctccag cgggccgaat gatttgtgga tatcctccac aaccagggcc
     6361 ggaatcggcg tgatgttctc aggcatgatg gcgggagtcc ttgtttttct gtcgcggcat
     6421 gaaaatgggc atgagaatca gctttgcaaa tcctgtgccc tgatgcaaaa gggggcgtcc
     6481 ttattcggac gcaggagaga gtgggcgcgg cttgtacgac gctcaccgcc gaaggcgcaa
     6541 ccggcccccg gaaccgctca ggcacaaagg gctgcgtttc gagacagggc actctggaaa
     6601 gccggtggcc atgccatcgc accgacgggg tcaagggttg tttgcggcag ttaatgcaac
     6661 aaataatccg aatctctcag gttcaaggac agaggggggt cagggatgcc ggcacttgca
     6721 atgccggcgg ctgatctgat tgggggttgt tttgcaaaaa acaccgttgg atgcgctgca
     6781 taggcgcctg ggcgcgcgga tggtcgagtt cgcgggctat gagatgccac tgcaatatca
     6841 gggcattatt gccgagcatc aggcctgccg cacgggcgcg gccttgttcg atgtctcgca
     6901 tatggggcag gtggaaatcg ccgacgtggc cgggttcgag cggctggtgc cgggcgatat
     6961 cagcgggctc aagccgggcc ggcagcgtta tagtttgctg cttaatgagg caggcggcat
     7021 catagatgac ctgatggtgg ccaatcttgg cccgcgcctg caggcggtgc tcaatgccgg
     7081 ccgcaagctg gtggacgtgg cgcatatgcg cgtccagggg ctggaagtga ccacacgctt
     7141 cgaccgcgcg ctcatcgcca tccaggggcc taaggcggtg gatattgtgc ccgaggccgc
     7201 ttcgctcaaa ttcatggacg ccgccacgct ggatgtcgcc ggcatcccct gcatcgtcac
     7261 ccgctccggc tataccgggg aggacgggtt cgaaatcggc tgtcctggtg acgctggcga
     7321 ggccctggcc gaggcgctgc tcgcccgcgg cgccgtcccg gccgggctgg gtgcgcgtga
     7381 ttcgctgcgg ctggaggccg ggctctgcct ctatggcaat gatatcggcg aggaaaccag
     7441 ccccgtcgcc gcccagctca atttcgccct gtccaagaag cggcttgccg cgggtgattt
     7501 catcggcgcc gccatcgtca accggcagct caaggatggc acggcgaagc tgctcgtagg
     7561 catcaggctg gacggccgcg ccccggcccg cgccggtgcc attatccagg ccaaaggcga
     7621 gcgcgtgggc gttgtcacct ctggctgttt cgcccccacc ctggaggccc ccatcgcgct
     7681 cggctatgtc gatgccgctt ttgccaggcc cggcaccaag ctggatctca tcgtgcgcga
     7741 caagccgctc gccggcattg tcgcggcact tcccttcgtt ccccataatt atgtccgctg
     7801 aaaggatcgt tcccatggcc caggtatttt tctcgaaaga tcatgaatgg atctcgctcg
     7861 gcgatgacgg tctggcgatt gtgggcatca ccgaccatgc gcagaacgcg ctcggcgaca
     7921 tcgttttcgt cgagctgccg gagcccggcc gcaatgtcgc caccggcgag gcctgcgccg
     7981 tggtggagag cgtgaaagct gcctcggaca tctatgcgcc gctctccggc acggtggcgg
     8041 aagtgaacca ggcgattgtc gatgagcccg gccttgtgaa tagcggcgcc gagggtaatg
     8101 gctggttctt caagctgcgc ctggaggatg tggcggcggt gagcagcctg atggaccgcg
     8161 ccgcctatga cgaatatctg agcacgctgg catgagcgcg ctcgaccaac tggccgccct
     8221 cgaacaggcc gatgcttttg ccgcccgcca tatcggcccg cgcggcgccg agctggcggc
     8281 gatgctgaaa attgtgaatg ccgcctcgct ggatgatctc atcgcccaga ccgtgccgga
     8341 atccatccgc gccaatgccg gtctcgctct gcccgcgccg ctcaccgaag ccgccgtgct
     8401 ggaggagctg cgcggccttg ccgctctcaa cacggtgaag aaatctctca tcgggcttgg
     8461 ctatcacggc acgctcaccc cgccggtcat ccagcgcaac gtgctggaaa atcccggctg
     8521 gtacaccgcc tacacgccct accaggcgga aatctcgcaa gggcggcttg aagccatcct
     8581 gaatttccag acgatggtgg caagcctcac gggcctcgaa atcgccaatg cctcgctgct
     8641 ggatgaagcc accgccgcgg cggaaggcgt tgccatggcg catgcgctgc ataagggggg
     8701 cagcaggacg attgccattg ccacggatgt gcatccgcaa acccgcgccg tcatcgccac
     8761 gcgcgcctgg ccgctgggct ggcacatcgt cgatgtgcat ccgggcgaca tcgaagccat
     8821 cgcgggttcg aagccttttg ccctggtgct caattatcct ggcagcaccg gcgaggttcg
     8881 tgacctcagc gctgagatcg ctgccgcgaa gacggttggc gcgatgagca ttgtctgtgc
     8941 cgatttgctg gcgctcactt tgctcacccc gcccggcgag atgggcgcgg acatcgtcgc
     9001 tggctcctcg cagcgtttcg gcgtgcccat gggcttcggc ggcccgcatg ccggctattt
     9061 cgccacgcgc gacgccttca agcgcgccat gcccggccgc ctcgtcggcg tgtcggtgga
     9121 tgccgctggc cgccccgcca tgcgcctcgc attgcagacg cgcgagcagc atatacgccg
     9181 cgagaaagcg acttcgaaca tctgcaccgc ccaggtgctg cttgccgtga tggctggttt
     9241 ctacgccgtc tggcacgggc cggaggggct gaaatccatc gcgcagcgcg tgcatcttca
     9301 ggcacgcctg ctggccgccg tcgcgcaccg tgccggctac gcgctccgcc atgacagctt
     9361 cttcgacacg ctcgccatcg aggccggcag caaggccgat gagctgatgc atgaagcgct
     9421 tgccgccggt ttcaatctgc gccgcatcga tgagaccggc atcggcatcg cgctggacga
     9481 gacggtgacg cgcgcggagc tggaagcgct cgcgggagtt ttcggtggca agctgcagga
     9541 tgaagcagcc gccatttctg agtcgctgca gcgccgttcc gagttctgcc aggaagcagt
     9601 gttcgacacg caccgctccg agcattccat gctgcgctat ctgaagcggc tggaggacaa
     9661 ggatatcgcg ctcaaccgcg ccatgatccc gctcggctcc tgcacgatga aactgaatgc
     9721 ggcggtggag atggctgcca tcacctgg
//
LOCUS       DASQCV010000193        10191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1863858, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000193 DASQCV010000000
VERSION     DASQCV010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 10191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10191
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1863858"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..2397
                     /locus_tag="VEQ16_02980"
     CDS             58..2397
                     /locus_tag="VEQ16_02980"
                     /inference="COORDINATES: protein motif:HMM:NF016736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HYP62821.1"
                     /translation="MSGVFSCPCDAPVATPPLNPPGLGVIAYRDTDYVDIRAALLTPL
                     PGETQLTAWQPGAGGDLALMMAEWFAYLGDILTFYNERIANEDYLGTATQARSVTNLI
                     RLLGYRPQPGIGASVTLAGLLQSGPSYGQTVTLPQGLQVTSKPSPGQTPQIFELTGPA
                     ALTAPDVITATAPLFLLAPSASTILLAGAVSTILGGDFLLLRPRAGGASHLVAVSGAA
                     ITTPPNGPKQTMLTVSFPNNDAPASTSAAGLRLDRPSLSTSLWSLSASYMDGSGNIHL
                     SGLVRSLKPGDQILFLIANKPPVLATLASVSDAVWDSTGAVPGKTSTTIIPHTQFTLS
                     AGAIPGGVEAGSITILYNFVETATLLDQPVPIWPAQNTGTPPALVSSSVFPAGDGVPV
                     LIADTTGAGIAAQATSAGAAHSMTTSGLGTASPSLQTPLSVLYNLLPFTRGKTVAGEV
                     LGSGDPTQANQSFTLAKSPLTYLRPAAALVSTLSIKVNGQVWTEVANLFNQPANAQVF
                     VTAQDENQITTVMFGDGVNGARLPAGTGNVVATYRYGSGAQSPPAGALSVIATPYPGL
                     RAVLNPVTASGGADPDPASQIQTYAPRSVLTFGRAVSAPDYEAIAAQIAAGTRVRAVW
                     GWDAVNQRGAVTVYVADDGGILANVRNGLLAVCDPNRPPVVIAATPIPVVLAIELLIS
                     PGADAPTVQTAVTAALTDPATGLFGAQRLGIGQPVFNSQIAAACRNVPGFVAVAALYF
                     FRLDLFELYTGQLHRCPEGSYFDLDPGNIYYDSEVTGDG"
     gene            2390..4546
                     /locus_tag="VEQ16_02985"
     CDS             2390..4546
                     /locus_tag="VEQ16_02985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62822.1"
                     /translation="MDDDFYAGWYGAKLWAMLPAIYRTLDSPDNGITPGPLQEFCNRL
                     GVQAAVLRRSIDRLWDNQSIETCDDWVIPYIGQLLATRIVACLPPRAQRLDVAKTIYY
                     RRRAGTLGLIEELTTDIAGHDARAVEFFRRLGRTRHNFDPAIGLTPNLSLYPTPAALL
                     NSTPPRGVIEGLCGPYSRTPAGGFADLRNNYAASNTGTAFDEYAYTADFRAGRQSTGW
                     YSISHLGMFIWWLYAFPVTNGTPAQNPDCPLQFSFDPIGREVPLFAPSQRAQEDFADN
                     WVAPNEWQLAAPVRETLWKLLPPALYPNAFSVAVGEGAAPPILDASQFEILPESGRFR
                     FLGAGSAARVSVVYHFGFSSGIGAGAGPSNAGFPAALATPANTVRIGGGTGLATALQN
                     LSSNATIQLEDSFTYAEALGDAGGITTVPGNLALIAATGTRPVLRLQNQPAAHWTLKA
                     PAVQEYDLVIQGLWLQGADLIIDGAWNNVTLQLCTLDPGSADPGHPSQFLSGIDGHAL
                     VPTHLVITGQIATLTLNSCITGPILTQGEGAVATLMINNSIVQATSHEPAISAATGLA
                     QLSRTTVLGTASLHELSASECIFDAEVTVQNAQEGCVRYSTIAQGSNLHAPFRCATVP
                     PRSDIFDSRAFGQPNYARVSAGADLAVLPAKHVEPPPSVLTGAAGGGQPGAFCAEQQA
                     LLALGLAAKLEEYAPAGLIPVWVDAEMNLPINEATQ"
     gene            4543..7560
                     /locus_tag="VEQ16_02990"
     CDS             4543..7560
                     /locus_tag="VEQ16_02990"
                     /inference="COORDINATES: protein motif:HMM:NF039478.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6519 domain-containing protein"
                     /protein_id="HYP62823.1"
                     /translation="MTIDIARSSYNATTRSWRAVLAQQGRVTLEADVNEQTAIASAAL
                     QAETVDIIGPIGTPDGGYLVSPAGTDLQVGKGTIYAGGLRLTQEKPVLTADQPGWLDM
                     PAWPAPSGNQTIALQVITQSVSAVEDQTLREVALGGPDTAGRLVYLQHLLRLPTTASD
                     CAGAAAALKTTLQQQGMDYDASTCALRYTARLKVSVLEAAKQSDPCQPQATGGYLGAD
                     NQMIRVAIAGFDNMAGTGTLVWGYDNASFLYRATPANGGNIVTLLSDPLDPDHTPQAN
                     QAVELLLCTEDLGDGDPAHSAAGGNFIAAAVGAVMVLGSNPYTASNRQLQLPGAPPAN
                     ADGKLPLFVRLWNQQVKFTLGTAVTLGETGLQVTITDLKLPTLTAFQARPFWHFAARP
                     STPQQLYPQRYLDAPQPPEGPVQYLAPLGVVGWSNNAFSLIEDCSLPFLPLTKLHDCS
                     CCALVLDPNKDWLTTLTQAAANSAITALSVCFQPGTFDVTNKITISNKSVHMTGAGYG
                     TLITGPGLEAVLEFDNCADVTLADFCVSAGTADYRPSTGTQGLQGAVTLRGCTQIDIS
                     RMKFTCADADLRSASCLAIYNPSGPAPSGQSYNARVRDSRFEPGHSQVGILLVNADRA
                     QVEGNVVVTPYASRNITLTNLGQYKMTAMRLRKQLLHSVILTSTAPPTTKKAKARARK
                     REAAKPAAANTAPKSKASPPATPAASDATGATPAAPKTQAAAVKQAAKKTDAAHTAKT
                     IAKAAVPHVDLSSIGRAQIKATFGTTHVSFLSSDKLTNAWSDALRSSQLSATSTMGMI
                     HRTIRQLATNIVTKPETAAPAFRTWMAASLPQLYSTSGQGIVVGGDFANDVRIIGNTI
                     DGTCQGIHVGLSDLKKDGKHPGHRSAARVQIKGNTVNIRVTPETTGDRHGIYLGCVQS
                     GLVAENHLTLTRSPSATAAGQYIDAIKIAGYFGQSLLVERNNMTGFTVGIYTAQDATS
                     PVDHVLWIISENASDAAHQITGGGMFVTANNIP"
     gene            7742..9604
                     /locus_tag="VEQ16_02995"
     CDS             7742..9604
                     /locus_tag="VEQ16_02995"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYP62824.1"
                     /translation="MQQMMQATQNRAATQSKLPQQNAFARRAADSIYDGGNQARLQQI
                     QRKLQEKFEISPVNDPLEHEADQTADKVMRMPDAALSFTPAPPQLSRKCEACDEEKQR
                     LQLKPLPGPSPAATTGPLLQAGLAAPGKPLDHAARSFIEPRLGHSLETVRIHDGAEAA
                     AAASTVGARAFTLGHDIVFNRGEYAPGSTEGRHLLTHELTHVLQQSGNGTKIRRKCGH
                     DGTPVNCHNWGLGLFPWLAGTYAHMQISAETAILWHSIPRSAKLFMDKPTDPSIAWGF
                     ADLWRNGGTVDIGEIKSTATGSEEAAKQAKHYVKRHDESTLRGPVAPDDKAYLDDVGG
                     SKPGKTLDLSGLTGGGKTLGPFVGDPGKQLWIEADNEGAVVYWCEGAGLPSPLWLVAF
                     KQAMDELKKKLDELRKRVGELVDAVVAAGSVLARWISGVIGSIVNWGAEHSRALAFAA
                     LLLILLVALIALILSILAEPPSAGTSTAPAIVSLMVMVGAVTGMVALIGVSTPGLPTA
                     TVAVLNAMRPAAADAAITPTDYDPKEDQQPPSAGDVAGLRRVDPGSQMTAALAAFTDP
                     QGLASSAVNAFMNGQADQGAAMAAAKNAIAALRANGGQADADAAEAQMKRTGLA"
     gene            9615..>10191
                     /locus_tag="VEQ16_03000"
     CDS             9615..>10191
                     /locus_tag="VEQ16_03000"
                     /inference="COORDINATES: protein motif:HMM:NF025078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4157 domain-containing protein"
                     /protein_id="HYP62825.1"
                     /translation="MMQKRSETQVLAPPRRIARPAPLGSNQAWLHRLAPRLQPKLEIG
                     AVNDPAEQEADHAAARVMSAEATSTAPPALAASPRRLSRKCGTCEEKETGLQMKQAGG
                     PSPAQAPPSVQAALGRPGRALDSAAQAFFAPRFGNDFSGVRIHDDAEAARSAQDIGAR
                     AYTVGRHIAFAPQQYAPYTATGRQLLAHELAH"
BASE COUNT         1933 a         3570 c         3037 g         1651 t
ORIGIN      
        1 caataatccc gattatccga gccgcggcac gctcaagatc attacggatg gtggacaatg
       61 agtggcgttt tttcctgccc ctgcgatgca ccggttgcca ccccgccgct gaatccgccg
      121 gggcttggtg tcatcgctta tcgcgatacg gattatgtgg acatacgcgc cgccctgctc
      181 accccgctcc ccggtgaaac gcagcttacc gcctggcaac caggagcggg tggcgatctc
      241 gcgctgatga tggcggaatg gttcgcctat cttggagata tcctcacctt ctacaacgag
      301 cgcatcgcca atgaggatta cctcggcacg gcaacgcagg cgcgcagtgt caccaatctc
      361 atccgcctgc tcggctaccg gccgcagccc ggcatcggcg cgagcgtgac gctggctggt
      421 ttgctgcaga gcgggccaag ttacggccaa accgtgacac tgccgcaagg gctgcaggtg
      481 acgagcaagc caagccccgg ccaaacaccg cagattttcg aactcaccgg cccggcggcg
      541 ctgaccgcac cggatgtcat cacggcgacg gcaccactct tcctgctcgc gccatccgcc
      601 agcaccatcc tgctggcagg tgctgtcagc accatcctcg gcggcgattt tctgctcttg
      661 cggccgcgcg cgggcggggc gtcgcatctc gtggcggtga gcggtgccgc catcaccacc
      721 ccgcccaacg gaccgaagca gacaatgctg acggtgagtt ttcccaataa tgacgccccc
      781 gccagcacct ccgccgccgg cctgcggctg gacaggccat ccctctccac cagcctctgg
      841 tcgctttccg ccagctatat ggacggctcc ggcaacatcc atctttccgg gttggtgcgc
      901 tcgctcaaac caggcgacca gattttgttc ttgatcgcca acaaaccgcc ggtgctggcg
      961 acgctggcca gcgtgagcga cgccgtatgg gattccaccg gtgcagtgcc agggaaaacc
     1021 tcgaccacca tcatcccgca tacgcagttc accttgagcg ccggcgcgat tccaggcggg
     1081 gtggaggccg gctccataac cattctatat aatttcgtcg aaactgcgac tctactggat
     1141 cagcccgtgc caatctggcc ggcgcaaaat accggcacac cgccggcgct cgtgagcagc
     1201 agcgtttttc ccgccggcga tggcgtgccg gtgctaattg ccgacacgac cggtgccggt
     1261 atcgcggcac aggccaccag cgccggcgcg gcgcatagca tgaccacctc cggcctggga
     1321 acagcctcac ccagcctgca aacgccactg tccgtgcttt acaacctgct gcccttcacc
     1381 cgcggcaaaa ccgtggcggg cgaggtgctg ggcagcggcg atcccaccca ggcgaaccag
     1441 agttttacgc ttgccaaatc gccgctcacc tatctgcggc ccgccgccgc gctcgtcagc
     1501 acgctgagca tcaaggtcaa cggccaggtc tggacggagg tcgcaaacct gttcaaccag
     1561 ccggcgaatg cgcaggtctt cgtgaccgcg caggacgaaa atcagatcac caccgtgatg
     1621 ttcggcgatg gggtgaacgg ggcacgtctg ccggccggaa cgggcaatgt ggttgccaca
     1681 tatcgttacg gcagtggcgc acaatcaccc ccggccggcg cgctcagcgt catcgcaacc
     1741 ccctatcccg gcttgcgcgc ggtgctcaat cccgtgaccg cctcgggcgg cgcagacccc
     1801 gatcccgcca gccagatcca gacctacgca ccccgttccg tgctcacatt cggccgcgct
     1861 gtgtcggcac ccgattacga ggccatcgcg gcgcaaatcg ccgcgggcac gcgagtgcgc
     1921 gcggtatggg gctgggatgc cgtcaaccag cgtggcgccg tcaccgtcta tgtcgccgat
     1981 gacggcggca tcctcgccaa tgtgcggaac gggttactcg ctgtctgcga ccccaaccgc
     2041 ccgcccgtgg tcatcgccgc aacccccatc cccgtcgtcc tcgccatcga attgctgatc
     2101 agccccggcg cggacgcccc caccgtgcag accgccgtca ccgcggccct gaccgacccg
     2161 gcaaccggcc tgttcggcgc gcagcgtctt ggcatcggcc agcctgtgtt caacagccag
     2221 atcgcggccg cctgccggaa cgtgccggga tttgtcgccg tcgcggcgct gtatttcttc
     2281 cggctcgatc tgttcgaact ctataccggc cagctgcacc gctgcccgga aggaagctat
     2341 ttcgacctcg atccgggcaa catctattac gacagcgagg tgaccggcga tggatgatga
     2401 tttctacgcc ggctggtacg gcgccaagct ctgggccatg ctgccggcca tctaccgcac
     2461 gctggacagt cccgataacg gcatcacgcc tggcccgctg caggaattct gcaaccggct
     2521 cggcgtccaa gcagcggtgc tgcgccgctc gatcgacagg ctctgggaca atcagtcgat
     2581 cgagacctgc gacgactggg tgatccccta tatcggccag ctcctggcca cgcgcatcgt
     2641 cgcctgcctg ccgcccaggg cgcagcggct ggatgtggcg aagaccatct attatcgccg
     2701 ccgcgccggc acgcttggcc tcatcgaaga attgacaacg gatattgccg ggcatgatgc
     2761 gcgggccgtg gaattcttcc gccgcctcgg ccgcaccagg cataatttcg atcccgccat
     2821 cggcctcacc ccgaatctct ccctctaccc cacacccgcg gcactgctga acagcacgcc
     2881 gccgcgcggc gtcatcgaag gattatgcgg tccctattcg cgcacaccgg ccggcggctt
     2941 cgcggatctt cgcaacaatt atgccgcctc caacaccggc acggccttcg atgaatatgc
     3001 ctatacggcg gatttccgtg ccggccggca atccacgggc tggtacagca tctcgcatct
     3061 cggcatgttc atctggtggc tctacgcctt tcccgtcacc aatggcacgc ccgcccaaaa
     3121 cccggactgc ccgctgcaat tcagcttcga tcccatcggg cgtgaagtcc cgctgttcgc
     3181 gccatcgcag cgcgcgcagg aggatttcgc cgacaactgg gtggcgccga atgaatggca
     3241 gcttgccgcc cccgtgcgcg agaccttgtg gaaattactg ccgccggcac tttatcccaa
     3301 tgcgttttcc gtcgccgtcg gcgaaggcgc ggcgccgccc atactcgatg ccagccagtt
     3361 cgagattctg ccggaatccg ggcgtttccg cttcttaggc gcgggctcgg ccgccagggt
     3421 ttccgtggtc tatcatttcg gtttctcatc gggaatcggc gccggcgccg gcccctccaa
     3481 tgcgggcttt ccagcggcgc tggccactcc ggccaatacc gttcgcatcg gcggcggcac
     3541 cggcctcgcc accgcactgc aaaacctcag cagcaacgcc acgatccagc tcgaagacag
     3601 cttcacctat gcggaggcgc tcggtgacgc cggcggcatc accaccgtgc cgggcaatct
     3661 ggcgctcatc gccgcaaccg gcacacggcc cgtgctgcgg ctgcaaaacc agcccgcagc
     3721 gcattggacc ctcaaagccc ccgccgtcca ggaatacgat ctcgtcatcc agggcctctg
     3781 gctgcaaggc gctgatctca tcatcgacgg ggcgtggaac aatgtgacgc tgcagctctg
     3841 cacgctcgat cccggctcgg ccgatcctgg tcatcccagc cagttcctga gcggcataga
     3901 tggccacgcg ctggtgccga cgcatctggt cattaccggg cagatcgcga ccctcaccct
     3961 gaacagctgc atcaccggcc caattctgac acagggggaa ggcgctgtcg ccacgctcat
     4021 gatcaacaac agcatcgtgc aggccacctc gcatgagccc gccatcagcg ccgccaccgg
     4081 gcttgcccag ctgagccgca ccacggtgct cggcacggcc agcctgcatg agctctcggc
     4141 cagcgaatgc atcttcgatg cggaggtgac ggtgcagaac gcgcaagaag ggtgcgtgcg
     4201 ctacagcacc atcgcccagg gcagcaacct gcatgcgccg ttccgctgcg ccactgtgcc
     4261 gccacggagc gatattttcg acagccgcgc gttcggtcag ccgaactacg cccgggtgag
     4321 cgccggtgcg gatctcgccg tgctgccggc caagcatgtg gaaccgccgc ccagtgtcct
     4381 caccggcgcg gccgggggcg ggcagccggg ggctttctgc gccgagcagc aggccctgct
     4441 cgcgcttggg ctcgcggcaa aacttgagga atatgccccg gccgggctga tcccggtctg
     4501 ggtggatgcg gagatgaacc tcccaatcaa cgaggcgaca caatgacaat cgatattgcc
     4561 cgcagcagtt acaatgccac cacccgcagc tggcgcgccg tgctggcgca gcaggggcgg
     4621 gttaccttgg aagccgatgt caacgagcag accgccatcg ccagcgcggc cttgcaggcg
     4681 gaaacggtgg atatcatcgg ccccatcggc acgccggatg gcggctatct cgtcagcccc
     4741 gccggcactg atctgcaagt cggcaaaggc acgatctatg ccggcgggct acggctgacg
     4801 caggagaaac cggtgctgac ggcggaccag ccaggctggc tcgacatgcc cgcctggccg
     4861 gcccccagcg gcaaccagac gatcgccttg caggtgatca cgcaaagcgt atcggccgtc
     4921 gaggaccaga ctttgcgtga ggtggctctg ggcgggcccg atacggcggg acggctcgtc
     4981 tatctgcaac atctgctgcg ccttcccacc accgccagtg actgcgccgg ggccgccgcc
     5041 gcactgaaaa ccacgctgca acagcaaggc atggattatg acgccagcac ttgcgcgctg
     5101 cgctatacgg cacggctcaa ggtctcggtg ctcgaagctg cgaaacagag cgacccgtgc
     5161 cagccccagg ccacgggcgg ctatctcggc gcggataacc agatgatccg cgtcgccatc
     5221 gccggtttcg ataatatggc gggcaccggc acgctggtct ggggctatga caacgcctcc
     5281 ttcctctatc gcgccacacc ggccaatggc ggcaatatcg tcacgctgct ctcggacccg
     5341 ctcgaccccg accatacgcc gcaggcgaac caggccgtgg agctgctgct ctgcaccgag
     5401 gatctgggcg atggcgaccc ggcgcatagc gctgccggcg gcaatttcat cgccgcggcc
     5461 gtgggcgccg tcatggtgct gggcagcaac ccttacaccg caagcaaccg ccagctccag
     5521 ctacccggcg cgccgcccgc gaatgcggac ggcaagctgc ccctgttcgt ccgcctatgg
     5581 aaccagcagg tgaaattcac cttgggcacg gccgtcacat tgggggaaac cgggctccag
     5641 gtgaccatta ccgatctcaa actgcccacc ctcaccgcct tccaggcaag gcccttctgg
     5701 catttcgcgg cgcggccaag cacgccgcag caactctacc cgcagcgcta tctcgatgcg
     5761 ccgcagccgc cggaggggcc ggtgcaatat ctggccccgc tcggcgtggt ggggtggagc
     5821 aacaacgcct tctcgcttat tgaagactgc tccctaccct tcctgcccct gaccaaactg
     5881 catgactgca gctgctgcgc cctggtgctc gaccccaaca aagactggct gaccacgctc
     5941 acccaggccg ccgccaacag cgccatcacc gcgctcagcg tctgtttcca gcccggcacg
     6001 ttcgacgtga cgaacaagat caccatcagc aacaaatcgg tgcatatgac gggtgcgggc
     6061 tacggcacgc tgatcaccgg cccggggctc gaggccgtgc tggagtttga caattgcgcg
     6121 gatgtgactc tcgccgattt ctgcgtcagc gccggtacgg ccgattaccg gccaagcacc
     6181 ggcacgcaag ggctgcaagg tgcggtgacc ttgcgcggct gcacgcagat cgacatttcg
     6241 cgcatgaaat tcacctgcgc cgatgccgac ctgcgctcgg cctcgtgcct tgccatctac
     6301 aacccttccg gcccggcacc gagcgggcag agctataatg cacgcgtgcg ggacagccgc
     6361 ttcgaaccag gacacagcca ggttgggata ttgctggtga atgccgaccg cgcccaggtg
     6421 gaaggcaatg tcgtggtcac gccctatgcc tcgcgcaaca tcaccctcac caatctcggc
     6481 cagtacaaga tgaccgcgat gcgcctgcgc aagcagctgc tgcacagtgt catcctcacc
     6541 agcacggcgc cacccacgac caagaaggcc aaggcccggg cgcgcaagcg cgaggcggca
     6601 aaacccgccg ccgccaatac cgcgccgaag agcaaagcca gccccccggc cacaccagct
     6661 gcaagcgacg ccacaggcgc cacgccggcc gcgcccaaaa cccaggcggc tgcagtcaaa
     6721 caggcggcga agaaaaccga cgcggcccac accgccaaaa cgatcgccaa ggccgccgtg
     6781 ccgcatgtcg atctcagcag catcgggcgg gcacagatca aggcgacatt cggcaccacc
     6841 catgtcagct ttctctccag tgataaattg accaatgcct ggagcgacgc actgcggtcg
     6901 agccagctct ccgccaccag cacgatgggc atgatccacc gcaccatccg ccagctcgcc
     6961 accaatatcg tgaccaagcc tgaaaccgcg gcccccgcct ttcgcacctg gatggcggcc
     7021 tccctgccac agctttattc cacctcgggc cagggcatcg tcgtgggcgg cgatttcgcc
     7081 aatgacgtgc gcatcatcgg caacaccatc gacggcacct gccagggcat ccatgtcggc
     7141 ctctcggatc tgaaaaaaga cggcaagcat cctggccatc gcagcgccgc gcgggtgcag
     7201 atcaaaggca acacggtgaa tatccgcgtc acgcccgaaa ccaccggcga ccggcacggc
     7261 atctatctcg gctgcgtgca gagcgggctg gtcgcggaaa accatctcac gctcacgcgc
     7321 tccccctccg ccaccgcggc ggggcaatat atcgatgcca tcaagatcgc cggctatttc
     7381 ggtcagagcc tgctggtgga acgcaacaac atgaccggct ttactgtcgg tatctatact
     7441 gcgcaggatg ccaccagccc ggtggatcac gtactctgga tcatttccga aaacgcgtcg
     7501 gacgcggcgc atcagatcac gggtggcgga atgttcgtaa ccgctaacaa tataccttga
     7561 cggcgatttc aaaaaagctt agaaaaatcc agctggttct taccgctgga gcgggtagta
     7621 cacatttatg tgtattagat ggttcgatgc catataaaac cagtcatcat gcaagaaggg
     7681 ggcgggcgga tatcatacgc cgtgccccct tttcgctctc ttacgcggtg gagggctggc
     7741 aatgcagcag atgatgcaag ccacgcaaaa ccgggccgcc acgcaaagca agcttccgca
     7801 gcagaatgca ttcgcgcggc gtgcagcgga tagcatctat gatggcggca accaggcgcg
     7861 gctgcagcaa atccagcgga aactacagga aaagtttgag atcagccccg taaacgaccc
     7921 gctggagcac gaggcggacc agacggccga caaggtcatg cgcatgccgg atgcggccct
     7981 gtcattcaca ccggccccgc cgcagctcag ccgcaaatgc gaggcctgcg atgaagaaaa
     8041 gcagcggctg cagctgaaac ctctacccgg gcctagcccc gccgccacaa caggccccct
     8101 gcttcaggcg ggcctcgccg cgccgggcaa gccacttgac catgccgccc gcagcttcat
     8161 cgagccaaga cttggccatt cgctggaaac ggtgcgtatc catgatggcg cggaggcggc
     8221 agcggcggcc agcaccgtcg gcgcgcgcgc cttcaccctc gggcacgaca tcgtcttcaa
     8281 ccgcggcgaa tacgcgcccg gcagcaccga gggccggcat ctgctgacgc acgagctgac
     8341 acatgtgctg caacaatccg gaaacggcac aaaaatccgc cgcaaatgcg ggcatgacgg
     8401 cacgcccgtg aattgccaca actgggggct tggcctgttt ccctggctcg ccggaaccta
     8461 tgcgcatatg cagatcagcg ccgagaccgc cattctctgg cattccattc cgcgcagcgc
     8521 caaattattt atggacaagc cgacggatcc gtccatcgcc tggggctttg ccgatctctg
     8581 gcgcaatggc ggcacggtcg atatcggcga gatcaaatcc accgccaccg gctcggaaga
     8641 ggccgctaag caggccaagc attatgtgaa gcgccatgat gaatccacct tgcgcggccc
     8701 ggtcgcgccg gatgacaagg cctatctcga cgatgtcggc ggcagcaagc ctggcaagac
     8761 gctcgatctc tcagggctga cgggcggcgg caagacgctg ggccccttcg tcggcgaccc
     8821 tggcaagcag ctctggatcg aggccgacaa tgaaggtgcc gtcgtttatt ggtgcgaggg
     8881 agccggcttg cctagtccgc tttggctagt ggccttcaaa caggccatgg atgagttaaa
     8941 gaagaaactc gatgagctga ggaagcgcgt cggtgaattg gtggacgccg tggttgccgc
     9001 cggctcggtg ctggcacgat ggatttccgg cgtcatcggc agcattgtga actggggggc
     9061 ggaacatagc cgggccctgg ccttcgccgc tttgctcctc atcctgctcg ttgccctcat
     9121 tgccctcatc ctctccattc tggccgaacc accttcggct ggaacctcca ccgcgccggc
     9181 cattgtctct ctcatggtca tggttggggc cgtaacgggt atggtggcgc tgatcggcgt
     9241 ttccacaccc ggtctgccaa cagccacggt ggcggtgctg aacgcgatgc ggccggccgc
     9301 ggcggatgcc gcgatcaccc caacggatta tgacccgaaa gaggaccagc aaccgcccag
     9361 cgcgggagac gtggccggct tgcgccgggt cgatcccggc agccagatga ccgcagccct
     9421 cgccgccttt acggacccgc aaggacttgc cagcagcgcc gtaaatgcct tcatgaacgg
     9481 ccaggccgat cagggcgctg cgatggccgc agcgaaaaac gccatcgccg cgctgcgggc
     9541 caatggcggc caggccgatg ccgacgcagc cgaggcgcag atgaagcgca cggggctcgc
     9601 ctgagatgtg gcggatgatg cagaaacgat ccgaaacaca ggtgctggca ccaccacgcc
     9661 gcattgcacg ccccgcacca ctcggtagca accaggcctg gctgcacagg ctcgcaccac
     9721 gcttgcagcc gaaacttgag atcggcgccg tcaacgaccc agccgaacaa gaagctgatc
     9781 atgccgccgc gcgggtgatg agcgccgagg caaccagcac ggcgccccct gccctcgcgg
     9841 catcaccgcg ccggctcagc cgcaaatgcg gcacatgcga ggagaaggag accggcctgc
     9901 agatgaaaca agccggtggc cccagcccgg cgcaggcgcc gccctcggtg caggcggcac
     9961 tcggccggcc aggccgggcg ctcgacagcg cagcccaggc ctttttcgcg ccgcgcttcg
    10021 gcaacgattt ttccggcgtg cgcatccatg acgatgccga ggccgcccgc tcggcacagg
    10081 acatcggcgc ccgcgcctac acagtgggac ggcatatcgc cttcgcgcca cagcaatacg
    10141 cgccgtacac ggcaacaggg cgccagctcc tcgcccatga gctggcgcat g
//
LOCUS       DASQCV010000194         2092 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2526882, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000194 DASQCV010000000
VERSION     DASQCV010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2092
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2526882"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2050
                     /locus_tag="VEQ16_03005"
     CDS             <1..2050
                     /locus_tag="VEQ16_03005"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HYP62826.1"
                     /translation="LIQILEGKGKSTNPVWLMQAAKCLGGIGPQAVSAVPVLTASLKN
                     PDQLVNVEACLALAAMGKDSLPATSALIEHLQNPKSLACAPAAFAVGRIGPAAKKAIP
                     ALIDGLKEKAEIRNACGEALARMGPEAAPAVPALLAAFGDKAPIKAIGPGAIPELIRF
                     LPGPDAKSNPDPENFLKQFGAKAAPALLHALAKDKNPAVRRAVAGILRGPTWGEAKDI
                     VPGLVQALVDMDAQVRQAAANSVLSFRKEAQPFLEQPLRGKDQALKLEAVGLLRQLGL
                     SAKSSAPLLLSILKEEDLALRLATVRALGSMNVHPKEAVPILLEALKDKDLTLVILPQ
                     LAIHGRGAKPAVPLLATILQEDSDWKIRRLAAYSLGRIGADRETLLPALKKALADKHE
                     LVRAEAAEALGGSRFAADEIVPLLTELLKDKSPEVQAGAVAGLGQLGKSAKSAVPLIH
                     KITKTSVELPAGKEGRELRSTCVIALGNIGPTANEAAPLLLSWLAAAKSEEARVEIIQ
                     ALGQIQAQQAATILKPLVRKDKGYEGIVAALAWWRIEQAPEALAFLEEGVKGKTGRSA
                     FIEAIGKIGAPARKSVPVLIDILQRDPDLDQRALAAEALGRIGPFARPAIKALIEALR
                     LPHAGLRIQAALALAPFEDDAKDAVPHLLRFLDDPESPQLRQAAADALQRIDPDALRP
                     "
BASE COUNT          410 a          682 c          634 g          366 t
ORIGIN      
        1 cctgatccag attctggaag gcaaaggcaa gagcacaaat ccggtttggc tgatgcaggc
       61 cgccaagtgc ctcgggggaa ttgggccaca agccgtgtct gcagtgccgg tcctgacggc
      121 gagtttgaaa aatccggacc agctggtcaa cgtggaagcg tgcctggcgc tggctgcgat
      181 gggcaaagat tcgttgccgg cgacttcggc attgatcgag catttgcaaa accccaaatc
      241 gttggcctgt gccccggccg cgtttgccgt cggccggatt ggccccgccg ccaaaaaagc
      301 cattcctgcc ttgatcgatg ggctcaaaga aaaagcggag attcgcaatg cttgcgggga
      361 agccctggcg cgaatgggcc cagaagccgc tcccgccgtc cctgccctgc tggctgcctt
      421 cggcgacaaa gctcccatca aggcaatcgg tcctggcgct attccagagc tcatccggtt
      481 cctgccgggc cctgatgcga aatcaaatcc cgaccccgaa aatttcttga aacaatttgg
      541 cgcgaaagcg gccccggctt tgctgcatgc cctggccaag gataaaaacc ccgctgtccg
      601 ccgagccgtc gccggcatcc tgcgagggcc aacctggggg gaagccaagg acatcgttcc
      661 cgggctagtt caagctctcg tggacatgga tgcgcaggtt cgccaggccg cggctaacag
      721 cgttctgagt tttcgcaagg aggcccagcc gttcctggaa caacccctcc gcggcaagga
      781 ccaggccttg aagctggagg cggtcggctt gctccgccaa ctcgggctgt ccgcgaaatc
      841 cagcgccccg ctgcttttgt ccattttgaa ggaagaagat ctcgcccttc ggctggccac
      901 ggttcgtgct ctggggagca tgaacgtgca tcccaaggag gccgtgccga tcttgcttga
      961 ggccctcaaa gacaaagacc tcacgctggt gattttgccg cagctggcga ttcatggccg
     1021 gggcgccaag cctgcggtcc ctctactggc cacgatcctg caagaggatt cggactggaa
     1081 aatccgccgc ctggccgcct attcccttgg ccggatcggc gccgaccgcg aaaccttgct
     1141 gcccgccctg aaaaaggccc tggcggacaa gcacgagttg gtccgcgcgg aggccgccga
     1201 ggcgctggga ggcagccggt ttgccgcgga tgagatcgtc ccattgctaa ccgaactgct
     1261 caaagacaaa tcgccggagg ttcaggccgg tgccgtcgcc gggctggggc aactcggcaa
     1321 gtctgccaag tcggcggtcc cactcatcca caaaatcacc aagaccagcg tggagctgcc
     1381 cgctggcaaa gaaggccgcg agctgcggag cacctgcgtg attgccctcg gtaatatcgg
     1441 cccaaccgcg aatgaggccg caccgcttct tctgtcctgg ctcgctgctg ccaagtcgga
     1501 agaagcgcgt gtggagatta tccaagccct tggacaaatc caggcccagc aggccgccac
     1561 aattctaaag ccgctggttc gcaaggacaa aggttacgag ggcattgtcg ccgctctggc
     1621 ctggtggcgc atcgaacagg ccccagaggc attggcattt ctggaggaag gcgttaaagg
     1681 gaaaaccggc cgcagcgctt ttatcgaggc gatcggcaag atcggagcgc cggcccggaa
     1741 atcggtgccg gtcttgatcg acattctcca gcgcgatccg gacctggacc agcgcgcact
     1801 ggccgcagag gcccttggcc gcatcggccc cttcgcccgc cccgccatca aagccctgat
     1861 cgaagcgctg cggctgccgc acgccggcct gcgcattcag gccgccctgg ccctggcccc
     1921 gttcgaggac gatgccaagg atgccgtgcc tcaccttctc cgcttcctgg acgatcccga
     1981 atccccgcaa ctccgccaag ccgccgccga tgccctgcaa cgcatcgatc ccgatgcgct
     2041 gcgaccatga aatgcggacg tggccaaagc gaattgccaa ttgacgccga tt
//
LOCUS       DASQCV010000195         7472 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_703256, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000195 DASQCV010000000
VERSION     DASQCV010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 7472)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7472)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7472
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_703256"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1303
                     /gene="zwf"
                     /locus_tag="VEQ16_03010"
     CDS             <1..1303
                     /gene="zwf"
                     /locus_tag="VEQ16_03010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HYP62827.1"
                     /translation="EEDYTAEARQAIEEHVPAKERDEEVMARFLARLHYVAVDAARET
                     GWHELAALLAQTQERITVFYLATVPALFGPICEHLGKLGLAGENARVVVEKPVGRDAA
                     SAREVNEMVGSVFPEERVYRIDHYLGKETVQNLMALRFANFLFEPLWNAAHIDHVQIT
                     VAESMGVEGRGNYYDTAGALRDMVQNHLLQLLCLVAMEPPSRLEADAVRDEKLKVLRA
                     LKNLTPSCWVRGQYRAGASATGPVPGYLEDLQAVSSNTETFVALRVDVENWRWAGVPF
                     YLRTGKRLAERVSEIVIAFRSVPHSVFDEAAGPVVPNQLVIRLQPDEGVQLWLMIKDP
                     GPGGMRLRQVPLDMSFSEAFGVRNPDAYERLVLDVVRGNQTLFMRRDEVEAAWAWIDP
                     ILEAWAQSSEAPKPYTAGTWGPSAAIALIERDGRTWEDGTP"
     gene            1300..1962
                     /gene="pgl"
                     /locus_tag="VEQ16_03015"
     CDS             1300..1962
                     /gene="pgl"
                     /locus_tag="VEQ16_03015"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: protein motif:HMM:TIGR01198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017057 - 6-phosphogluconolactonase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HYP62828.1"
                     /translation="MKRFSSREDLAEALAGHVATVLRQHLDHEERAVLAVSGGTTPAR
                     FLDLLSRKPLDWARVVVTLVDERWVDENAPRSNAALVRTHLLHGAAATARFLPLYNGA
                     ATPEEGAKKLDLPLPLTAAVLGMGEDGHTASFFPKGDHLTEALDPEGRAMVLPMHAPG
                     APEPRITLTLPVLLGADYLALHIEGDTKRLVLEKALVQGADLPVSAVLAARPGMDIYW
                     SP"
     gene            1966..3795
                     /gene="edd"
                     /locus_tag="VEQ16_03020"
     CDS             1966..3795
                     /gene="edd"
                     /locus_tag="VEQ16_03020"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004456 - phosphogluconate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HYP62829.1"
                     /translation="MLHPRIQDVTNRIIARSASSRATYLAHIEAVRGKGPSRARLGCA
                     NQAHGFAACGPGDKAALSASTAPSLGIVTAYNDMLSAHQPYEHYPEQIRAAAREAGGV
                     AMVAGGVPAMCDGITQGQTGMELSLFSRDVIALATAVALSHNTFDAAVFLGICDKIVP
                     GLVIGALSFGHLPAVFIPGGPMTSGLSNPEKAKARQLFAEGKIDRATLLAAEAKSYHA
                     PGTCTFYGTANTNQMMMEVMGLHLPGAAFVNPGTPLRAALTRAATQRALSLTALGNDY
                     LPVGRMIDERSFVNGLVALHATGGSTNHTLHLIAMAASGGIVLNWDDFADLAEVTPLL
                     CHIYPNGKADVNHFQAAGGTGFVIRELLEAGLLHRDVRTVVGDLTPYTQEPYLDGETL
                     SWRPAPETSGDETVLRGRQNPFQPTGGLRLLNGDLGRAVIKTSAVAPERHIIEAPCRI
                     FEDQEQVHDAFKAGELDRDVVVVVRFQGPRADGMPELHRLMPPLGVLQDRGFKVALVT
                     DGRMSGASGKVPAAIHVTPEAEEGGPIARLRDGDIIRVDAPAGMLSVAADLSTREPVQ
                     ADLSNRHWGTGRELFAGFRQLVGRADQGASIFGLGSANVAGRA"
     gene            3776..4420
                     /gene="eda"
                     /locus_tag="VEQ16_03025"
     CDS             3776..4420
                     /gene="eda"
                     /locus_tag="VEQ16_03025"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008675 -
                     2-dehydro-3-deoxy-phosphogluconate aldolase activity
                     [Evidence IEA];
                     GO_function: GO:0008700 - 4-hydroxy-2-oxoglutarate
                     aldolase activity [Evidence IEA];
                     GO_process: GO:0009084 - glutamine family amino acid
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HYP62830.1"
                     /translation="MLQDGLEDILRLAPVVPLVIIDELADAVPLARALVAGGLRAIEV
                     TLRTKAGLEAIRAVAAEVEGAVPGVGTVLQPDEYLKAAQAGARFAVSPGITTKLLDAA
                     EESGIPPLPGIATASEAMQLIERGYHFAKFFPAEAAGGAPFLSALASPLPQLCFCPTG
                     GITLENAPRYLKLPNVICVGGSWMVSRTAIQAKDWSGITASAAAAAGLVRWKSG"
     gene            complement(4479..5075)
                     /locus_tag="VEQ16_03030"
     CDS             complement(4479..5075)
                     /locus_tag="VEQ16_03030"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYP62831.1"
                     /translation="MSPLDPRDAVMKKVHLAFLAYGYEQMTMIGLAKAADMSRRSLYN
                     YFANKEEAFRAAVRWGNARNIASGQMAAAEAKAAGADALEILVAFADARYGGTRRELG
                     KSPHAVEINDQAFRRCRDIMIDAAVAGQDRLADILLDLQEAGLVRWRENYSAAQLAQY
                     FSDAARGVNQTLPPRPSISLRERYREIFAALLGGVTQA"
     gene            complement(5758..6369)
                     /locus_tag="VEQ16_03035"
     CDS             complement(5758..6369)
                     /locus_tag="VEQ16_03035"
                     /inference="COORDINATES: protein motif:HMM:NF025605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP62832.1"
                     /translation="MITDAAKWLFLKKGYGSATTDDLTARCKISKQTLYRLFPSKAAL
                     FAAVVTANKPSWLDFTAAYDELPLEEALARIFRIDISPDADQERLAFVRLVVTESHSS
                     PELTEILRESGSNVSRAELAQWFIRQAAQGRILVDDADSMARMLMDMIFGAIILKGVG
                     ELDWPGSINRQAHIRRCIAIFLNGARPRTRRPQGSKLNHRHTR"
     gene            6664..>7472
                     /locus_tag="VEQ16_03040"
     CDS             6664..>7472
                     /locus_tag="VEQ16_03040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYP62833.1"
                     /translation="MISLSFPQVPHRRAAHSAVLLGVLAMVPLITACSKKAPPAASPP
                     QVGVVTLHTQPILRTTTLPGRTESVMVSDVRPQVGGVILQRLFTEGGDVKEGQQLYQI
                     DPSIYQADYDSALATLAHDQAALATANAKAERYRPLAAAQAVSAQDYSDAAAAAQEAA
                     ADVASANAAVEQARINLRYTKVLSPISGTIGASTVTPGALVTAEQATALATVTELDPI
                     YVDVNEPTTVWLRLKQEIAAGQLESQRDGSAAVTLTLEDGSTYSLPGKLQFS"
BASE COUNT         1337 a         2291 c         2358 g         1486 t
ORIGIN      
        1 cgaagaagat tataccgccg aggcccgcca ggcgatcgag gagcatgtgc cggcaaaaga
       61 gcgcgacgag gaggtcatgg cccgtttcct ggcccgcctg cattacgttg ccgtggatgc
      121 ggcgcgtgaa acaggatggc atgaacttgc cgcgctactc gcgcaaacgc aagagcgcat
      181 cacagtgttc tatctggcaa ccgtgccggc tttgttcggg ccaatctgcg aacatttggg
      241 gaagcttggc ctggcgggtg agaatgcccg cgtggtggtg gaaaagccgg tgggcaggga
      301 cgccgcctcg gcccgcgagg tgaacgaaat ggttggcagc gtgtttccgg aagagcgcgt
      361 ctaccgtatc gatcattatc ttggaaagga aacggtacag aatctcatgg cgcttcgttt
      421 cgccaatttc ctcttcgagc ctttatggaa tgcagcgcat atcgaccatg tgcagatcac
      481 ggtggcggag agcatgggcg tggaagggcg tggcaattat tacgacaccg cgggggcgtt
      541 gcgcgacatg gtgcagaatc acctgctgca gcttctctgc ctggtggcga tggagccgcc
      601 ctctcggctg gaagctgatg cggtgcgtga tgagaagctg aaagtgctac gcgccttgaa
      661 gaatctgacg ccatcctgct gggtgcgggg ccaatatcgt gcgggggcga gcgccaccgg
      721 gccggtgccg ggctatttgg aagatttgca ggccgtatcg agcaacaccg agaccttcgt
      781 ggcattgcgc gtcgatgtgg aaaattggcg ctgggcgggc gtaccctttt atctgcgcac
      841 gggtaaaagg ctggcagagc gtgtctcgga aattgtcatc gctttccgtt ctgtgccgca
      901 ttctgtgttc gacgaagccg ccggccccgt agtgcccaac cagctggtca tccgcctgca
      961 gcccgatgag ggcgtgcaac tctggctgat gatcaaggat cccggccccg gcggcatgag
     1021 gctaagacaa gtgccgctgg atatgagttt ttcggaagcg ttcggcgtac gcaatccaga
     1081 cgcctatgag cgcctagtgc tcgatgtggt gcgcggcaac cagactttgt tcatgcgccg
     1141 cgacgaggtg gaggcggcct gggcgtggat tgacccaatt ctggaagcct gggctcaatc
     1201 cagcgaggcg ccaaaaccct ataccgcggg tacctggggg ccgagtgctg cgatcgcgct
     1261 gatcgagcgg gacggccgca cctgggaaga tggcacgcca tgaaacgttt ttcctcgcgg
     1321 gaagacttgg cggaagcgct ggcgggccat gtcgccacgg tgctgcggca gcatctggac
     1381 catgaggaaa gggccgtgct ggcagtatcc ggaggcacca caccggcacg ctttctggat
     1441 ctattgtcgc gcaagccgct cgactgggcg cgggtggtgg tgacgctggt ggatgagcgc
     1501 tgggttgacg aaaacgcgcc gcgcagcaat gccgccctgg tgcgcacgca tctgttgcat
     1561 ggcgcggcag ctacggcgcg tttcctgccg ctttataacg gcgcagccac accggaagag
     1621 ggggcaaaaa agctagattt gcctttgccg ctcaccgctg ctgtgctcgg catgggcgaa
     1681 gacggtcata ccgcctcgtt ctttcccaag ggagaccatt tgaccgaggc gctcgaccct
     1741 gagggcaggg cgatggtttt gcccatgcac gcaccgggcg cgcccgagcc gcgcatcacg
     1801 ctgaccctgc ccgtgctgct cggcgcggac tatctcgccc tgcatatcga aggcgacacc
     1861 aagcgcctcg ttctggaaaa agcgctggtg cagggcgccg atttgccggt cagtgcggtc
     1921 ctcgccgcgc ggcccggcat ggatatctac tggagtccct gagacatgct tcatccccgc
     1981 atccaggatg tgacaaatcg catcatcgcg cgcagcgcct cgtcgcgcgc cacctatctc
     2041 gcgcatatcg aggcagtgcg tggcaaaggg cccagtcgcg cccgccttgg ctgcgccaac
     2101 caggcgcatg gctttgccgc ctgcggcccg ggcgacaagg cagcactctc cgccagtacg
     2161 gcgcccagcc tcggcatcgt cactgcctat aacgatatgt tatctgcaca ccagccctat
     2221 gagcattacc ccgagcaaat ccgcgcggcg gcacgcgagg caggtggcgt cgccatggtg
     2281 gcgggcggcg tgcccgccat gtgcgacggt atcacccaag gtcagacggg catggaactg
     2341 tcgctcttct cgcgcgatgt catcgccttg gctaccgccg tggcgctgtc acacaacaca
     2401 ttcgatgccg cggttttcct cggcatctgc gacaagatcg tgccgggcct cgtcatcggc
     2461 gcgctcagct ttgggcatct gccggcggtc ttcattcccg gcgggccgat gacctccggt
     2521 ttgtccaatc ctgaaaaagc caaggcccgt cagctttttg ccgaaggcaa gatcgaccgc
     2581 gccaccctgc tcgcggcgga agctaaatcc tatcacgccc ccggcacctg tacgttttac
     2641 ggtaccgcca ataccaacca gatgatgatg gaggtgatgg gactgcatct gcccggcgct
     2701 gccttcgtca atcccggtac gccgctacgt gcggcactca cccgcgccgc cacgcagcgc
     2761 gccttgtcgc tgaccgcgct gggcaatgat tatctacccg tgggcaggat gatcgatgag
     2821 cgcagtttcg tgaatgggct tgtcgcgctg cacgccacag gcgggtccac caaccacacg
     2881 ctgcatctca tcgccatggc cgcttccggc gggattgtgc tgaactggga tgatttcgcc
     2941 gatctcgccg aggtgacgcc gctgctgtgc cacatctatc ccaacggcaa ggcggatgtg
     3001 aatcacttcc aggccgccgg cggcacggga ttcgtcatcc gcgagttgtt ggaagccggg
     3061 ttgctgcatc gggatgtgcg gacggtcgtg ggcgatctca cgccttacac acaggagccc
     3121 tacctggatg gcgaaaccct ctcctggcgc ccggcacctg aaacaagcgg cgatgaaacc
     3181 gtgctgcgcg ggcgccagaa tccgttccag cccacgggtg ggctcaggct gctgaatggc
     3241 gatctcggtc gcgccgtgat caagacctcc gccgtcgcgc ccgagcgcca catcatcgag
     3301 gcaccttgcc gcatcttcga agaccaggag caggtgcacg acgctttcaa ggccggcgag
     3361 ctggaccgcg acgtggtggt ggtggtgcgc ttccagggcc ccagggccga tggcatgccc
     3421 gaactgcata ggctgatgcc gcctctgggt gtgctgcagg atcgtggctt caaggtggcg
     3481 ctggtgacgg atggccgcat gtccggcgcc tcgggcaagg tgccggcggc catccatgtt
     3541 acgccggagg cagaggaggg cggcccgatc gcccggctgc gcgatggcga catcatccgc
     3601 gtcgacgctc cggccggcat gctgagcgtg gcggccgatc tttccacgcg cgaaccggtg
     3661 caggccgatt tgtccaaccg ccattggggg acgggccgcg aattattcgc cgggttccgc
     3721 cagttggtcg ggcgggccga tcagggcgcg tccatcttcg gcttggggag cgccaatgtt
     3781 gcaggacggg cttgaagaca ttctccgcct tgcgcctgtg gtgccgctgg taattatcga
     3841 tgaactggca gatgccgtgc cgttggcgcg tgccttggtg gctggtgggt tgcgcgctat
     3901 cgaggtgacg ttgcgcacca aggctggttt ggaggccatc cgtgccgttg ccgccgaagt
     3961 ggaaggcgcg gtccccggcg tcggcaccgt gctgcagccg gacgaatacc tcaaagccgc
     4021 acaggccggc gcgcgcttcg ctgtctcgcc cggcatcacg acaaaattgc tggatgctgc
     4081 tgaagagtcc ggtattccac ctttgcccgg cattgccacc gcctccgagg cgatgcagct
     4141 catcgagcgc ggctaccatt tcgcgaaatt cttccccgcc gaggcggccg gcggcgcgcc
     4201 ctttctctcc gccctggcat cgcccttgcc gcagctgtgt ttctgcccca ccgggggtat
     4261 tacgttggaa aacgcgccgc gttatttgaa gcttcccaac gtcatctgcg ttggcgggtc
     4321 atggatggtc agccgcaccg ccatccaggc caaggactgg tctggtatca cggcctcggc
     4381 cgcggctgcg gcgggattgg ttcgctggaa aagcggctga gcagcgcgtc atccgcctgt
     4441 gggacggaaa ccacggttcg ccctcgcctg ccgtctggtc aggcctgtgt cacgccaccc
     4501 agcagggcgg cgaaaatttc gcggtagcgc tcgcgcaggc ttatcgaagg gcgcggcggc
     4561 agggtctggt ttaccccgcg cgcggcatct gagaaatact gtgcgagctg cgcggcggaa
     4621 taattttccc gccagcgcac cagcccggcc tcctgcaggt ccagcaatat gtccgccaga
     4681 cggtcctggc ccgccactgc ggcgtcgatc atgatgtcgc ggcagcgccg gaaagcctgg
     4741 tcattgattt ccactgcgtg cggcgacttg cccagctcgc ggcgcgtccc gccatagcgg
     4801 gcatcggcga aggcgacgag gatttccagc gcatccgccc ccgcggcctt ggcctcggcc
     4861 gctgccatct gtccggaagc gatattgcgg gcattgcccc agcgcacggc ggcgcggaac
     4921 gcctcctcct tgttggcgaa ataattatag agcgagcggc gtgacatatc tgcggccttg
     4981 gccaggccaa tcatggtcat ctgctcatag ccatatgcca gaaatgccag atgcactttt
     5041 ttcatcacgg cgtcgcgcgg atctagggga ctcattcaaa aacggtacca ccgttcagct
     5101 cgtctgtctc tttcaggaca tacacagctt tgtataattt gcgcgtgatg atcgcgtata
     5161 tatcgcgtat gcgtgaatat aagatagcag gtggatgtta aggggatttt atcagcagga
     5221 tttcgatcgc catcgtaagc ggtgcgacct taggtggagt aggagctatt cgccgccccc
     5281 ggccatcacc agttttcggc catcaccagt tttcctgacg cagttatgcc tgacgcggtt
     5341 atgccggtat gcagatctca gcagacacgc aaacacactg gccgatactg gcgaaatcat
     5401 cggcagctgg atcaatttca agtatttcag ttcaacttgc ggtacaaccg gaaggataag
     5461 gaaatgttcc aaatagtttt ggccgcgccg ataatagccc cgttataacc gcgctcccag
     5521 aaccgagtcc gccacggtgt tgttagcgga gcttcgcgag ggcagcccgg cggtcgcgcc
     5581 aagcgcaaaa gagtgcaccg atcattcccg cagaaagcgg aaggaacagc atctcaagag
     5641 caagatccac gatattcatg ttttattttc ccgggacgtc acattcattg ccacggctga
     5701 tggcttcgcc gtgtttcagc agattttagt accaaaatcc tggccctgcc agaaaaatca
     5761 tctggtatgt ctatggttca attttgaacc ttgggggcgt ctggtccggg gccgcgcgcc
     5821 gttgaggaag atggcgatgc agcggcgtat atgtgcctgg cggttgatgc tgccgggcca
     5881 gtccagttcg cccacgcctt tgaggatgat ggcgccgaag atcatgtcca tcagcatgcg
     5941 ggccatgctg tcggcgtcat ccaccaggat gcggccttgt gccgcttggc ggatgaacca
     6001 ttgcgcgagt tcggcgcgcg acacattcga gccactttcc cgcaggattt cagtgagttc
     6061 cgggctgcta tgcgattccg tcacgacgag gcggacaaag gcgagccgct cctggtcggc
     6121 atccgggctg atatcaatgc ggaagatccg ggccagcgct tcctccagcg gcagctcgtc
     6181 ataagcggcg gtgaaatcca gccagctcgg cttgtttgcc gtcaccaccg ccgcaaacaa
     6241 ggccgccttg ctcggaaaca gccggtagag cgtctgtttg gaaatcttgc agcgcgccgt
     6301 gaggtcgtcg gttgtggcgc tgccatagcc ttttttcagg aagagccatt tggcggcgtc
     6361 cgtaatcatg ccccgttgcg cctcgtcgga ggctgtcttc ggccggccgc gcccccgagt
     6421 cacgacgtcc tgcacatctg ctccttcatt gttaattttc atcacctatc ttcgcttggt
     6481 gtcagctttt caagcatatc tgggggtagc cgttgtgcac tgcagcatct tgacatgagc
     6541 cgcaggttga tattagcagt acttgatagt acttaaaatg ctatttttat atcgctgttg
     6601 cctgatgacg tgttgtccat ccggcgccac ggttaactcg ttcctcccag gtgacttatg
     6661 ggcttgatct cgctttcctt cccgcaggtg ccgcaccgcc gcgccgcgca ttcggccgtg
     6721 cttctgggtg tcctggccat ggttccgctg ataacggcct gcagcaagaa agcaccgccc
     6781 gccgcatccc cgccgcaggt gggggtagtc accctgcaca cgcagcccat attgcgcacc
     6841 acgactctgc cgggccgcac agaatccgtg atggtgtccg atgtacggcc ccaggtcggc
     6901 ggcgtgattc tccagcgcct tttcaccgaa ggtggcgatg tgaaggaggg gcagcaactc
     6961 taccagatcg acccttccat ctatcaggcg gattatgaca gcgccttggc cacactggcc
     7021 catgatcagg ccgccctggc caccgccaac gccaaggcgg agcgctacag gccactggcg
     7081 gcggcacagg ccgtgagcgc gcaggattat agcgatgccg cggcggctgc acaggaggcg
     7141 gcggcggatg tcgcctcggc caacgccgct gtcgagcagg cccgcatcaa tctgcgttac
     7201 accaaggtgc tctcgcccat ttccggcacg atcggtgcct ctaccgtaac acccggcgcg
     7261 ctggtgacgg cggagcaggc cacggcgctg gcgacggtga cggagctcga ccccatctat
     7321 gtggatgtca atgagcccac caccgtgtgg ctgcggctga agcaggaaat cgcggccggg
     7381 cagcttgagt cccagagaga tggtagtgcg gcggtcacgc tgacgctgga ggatggcagt
     7441 acctattcgc tgcccggcaa gctgcaattc tc
//
LOCUS       DASQCV010000196         2080 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3190780, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000196 DASQCV010000000
VERSION     DASQCV010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3190780"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..620
                     /locus_tag="VEQ16_03045"
     CDS             <1..620
                     /locus_tag="VEQ16_03045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYP62834.1"
                     /translation="PPSYVVALTHLFAQINKPVALLGTSLGGICGMMLAAAQGTPLTK
                     LVLNDIGPFIPAAALLRIRDYVSNSPDRFPTVKALEEHLRKIHAPFGRLSDAQWAHLA
                     RFSARTVLDQTGQGSFALDYDPKIIEPMRASVPLDVDTWPIWSLITIPRLVIRGAESD
                     LLLPDTYDRMLSTGAQGYVVQDAGHAPALMDYESMARIKAFLLEG"
     gene            761..1648
                     /locus_tag="VEQ16_03050"
     CDS             761..1648
                     /locus_tag="VEQ16_03050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HYP62835.1"
                     /translation="MIGTLFDRGHWPLVRRALLMAFRATASQRVSLVAAGCAFYATLA
                     LFPTITMLISLYGLLFNPDTVQPQLLYLRGFMPPAAFELISDRITSIVAQPSKGLGLS
                     FGLSLAISLWSSSTGTKSILNALSLAYHERETRGLLRFQFVAFSMTIIAIIGVIMAIA
                     FLVFLPIALAHFHLPGEFKFAIGLVGPVTLILFLAVSLSLLYRFGPAGKGRIFYAPGA
                     AVATIAWLAASSAFGFYVGHFAAYSALYGPLATLIGLMMWFYISAYVVLFGAELNAAL
                     DREWRHLHPVRARGHAVVT"
     gene            complement(1863..>2080)
                     /locus_tag="VEQ16_03055"
     CDS             complement(1863..>2080)
                     /locus_tag="VEQ16_03055"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYP62836.1"
                     /translation="TRAFRASRGRSIASHITEKRIEQAKQLLAQGEQIKCIAHQLGFA
                     SPANFSYAFRQATTITPRQYRDRLARD"
BASE COUNT          312 a          691 c          622 g          455 t
ORIGIN      
        1 agccgccttc ctatgtggtg gcgctgacgc atctcttcgc acagatcaac aagcccgtgg
       61 cgctcctcgg cacctcgctt ggcgggattt gcggcatgat gctggccgcc gcccagggca
      121 cgccgctgac gaagctggtg ctcaacgata tcggcccctt cattcccgcc gccgccctgc
      181 tgcgcatccg cgactatgtc agcaattcgc cggaccgctt tcccaccgtg aaggcactgg
      241 aagagcatct gcgcaagatc catgcgccgt ttggccgtct ctccgacgcg caatgggcgc
      301 atctggcgcg cttctcggcc cgtaccgtgc tggaccagac cgggcagggc agtttcgcgc
      361 tggattacga tcccaaaatc atcgaaccga tgcgcgcctc cgtgccgctc gatgtcgata
      421 cctggccgat ctggtcgctt atcaccatac cccgcttggt gattcgcggg gcggagagcg
      481 atcttttgct ccccgacacc tatgaccgga tgctgtccac cggtgcgcaa ggctatgtgg
      541 tgcaggatgc gggccacgcc ccggcgctga tggattatga gagcatggcg cggatcaagg
      601 cgtttctgct ggaggggtga tgtgccagca tatttgtgac gcttcgttac caacgggcgt
      661 tattcatcgc gccagcgagc cgtctcgatt ttaaaagccg gaatatgaca atataatttc
      721 ggcgttgccc cgctcacggc ggaaccgtta aaccggcggc atgatcggca cacttttcga
      781 ccgcgggcat tggcctctgg tgaggcgtgc cttgctcatg gcctttcgcg cgaccgcatc
      841 gcaacgcgtg tcgctggttg cggccggctg cgccttctac gccacgctgg cgctcttccc
      901 caccatcacc atgctcattt cgctctacgg gctgcttttc aaccccgata cggtgcagcc
      961 gcagctgctc tatctgcgcg gcttcatgcc gcctgcggcg ttcgagctga tttcggaccg
     1021 cattaccagc atcgtcgcgc agcccagcaa aggactcggc ctgtcgttcg gcttgtcgct
     1081 ggccatctcg ctctggtcct cctccaccgg caccaaatcc atcctcaatg cgctctcgct
     1141 cgcctatcat gagcgcgaaa cacgcgggct gctacgcttc caattcgttg ccttctccat
     1201 gaccatcatc gccattatcg gcgtcatcat ggccatcgcc tttcttgtct tcctgcccat
     1261 cgcgctggct catttccacc tgccgggcga gttcaaattc gccatcggcc tcgtcgggcc
     1321 ggtcacgctc atcctcttcc tcgccgtgtc gctgagcctg ctctatcgct tcggccctgc
     1381 cggcaagggg cgcatcttct acgcgccggg cgccgccgtc gccaccatcg cctggctcgc
     1441 cgcctcctcc gccttcgggt tctatgtcgg ccattttgcc gcctacagcg ccctgtacgg
     1501 gccgctcgcc acacttatcg gcctgatgat gtggttctat atctccgcct acgtcgtcct
     1561 cttcggcgcc gaactcaacg ccgccctcga ccgcgaatgg cgccacctgc atccggtcag
     1621 agccagggga catgccgtgg tgacgtaagg ccaggggctc tgcccctgga ccccgctggg
     1681 cctgaggctc agaccccatt agttttttaa aagaattgag aaggggcctg ccaccaagcc
     1741 gtttcgtggc taggaggcag gctccttctc aattcttaaa gctagcgggg gtctggggcc
     1801 tcaggcccca gcgggtccag ggcagagccc tggccttacg tcactacggc accggccctg
     1861 gcttagtccc gggccaggcg gtcgcgatat tggcgggggg tgatggtggt ggcttggcgg
     1921 aaggcgtagc tgaaattggc gggggaggcg aagccgagct ggtgggcgat gcatttgatt
     1981 tgttcgccct gggcgaggag ctgcttggcc tgctcgatgc gtttttcggt gatgtggctg
     2041 gcgatggagc ggccgcggct ggcgcggaag gcgcgggtga
//
LOCUS       DASQCV010000197         1993 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2361674, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000197 DASQCV010000000
VERSION     DASQCV010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1993
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2361674"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..563
                     /locus_tag="VEQ16_03060"
     CDS             <1..563
                     /locus_tag="VEQ16_03060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62837.1"
                     /translation="SADVMGGIVSRNTTRSTGAAAATAKGNGNIISGDIQLALPLSFR
                     GAQIVPAFGLQIASVTTGRLDETSATQAFALNVAAASGTTIALYLRMSVQKNFITASN
                     LVITPDLTLGVSAMLNNPGAKTRLTTQDGTNFITTPQHLAPIAGQLSAGISIAKGNWS
                     ITARYTGTAGGNWSGQSLQAGVLVRF"
     gene            complement(664..1638)
                     /locus_tag="VEQ16_03065"
     CDS             complement(664..1638)
                     /locus_tag="VEQ16_03065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019014380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-2,3-aminomutase-like protein"
                     /protein_id="HYP62838.1"
                     /translation="MPDGISPPKPRTLRRPQELVESGLLAPEDRAGVEAVAARYAIAV
                     PPALAALITDKHDPIGLQFIPDPAELITAPHESTDPIADEALSPIPGIVHRYPDRALL
                     KPLLACPVYCRFCFRREQVGPDGGLLTEAELDAAYAYIESRPGIREIILTGGDPLILS
                     PRRLGAILRRLQDIPHIELLRIHTRAPIADPTIIDDALLDALDIEKPLYIAIHANHAR
                     ELTQDVTSALRKLTRLGIPLLGQTVLLAGVNDNETALAGLFRAMLRARIKPYYLHQLD
                     PAPGTARFHVPQERGRQLLQNLRGHISGTALPTYILDRPGGLGKVPLG"
     gene            1662..>1993
                     /locus_tag="VEQ16_03070"
     CDS             1662..>1993
                     /locus_tag="VEQ16_03070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HYP62839.1"
                     /translation="MASQPWQTLPDRMPRLLRRNRLAQAVRAFFAARGYTEVDTPYAV
                     MAPGEEVHLRARPAGDLWLNTSPEFAMKKLLAGGSGPIFQLARVWRDEPWSPTHAPEF
                     TMLEWYSLG"
BASE COUNT          311 a          611 c          728 g          343 t
ORIGIN      
        1 tcagcgctga tgtgatgggc ggcatcgtct cccgcaacac cacccgcagc accggcgctg
       61 ccgctgccac cgccaaaggc aatggcaaca taatctccgg cgacatccag ctcgctctgc
      121 cgctgagctt ccgcggcgcg cagatcgtcc ccgctttcgg gctgcagatc gccagcgtta
      181 ccactgggcg gctggacgaa acctccgcca cccaggcctt cgccctcaac gttgcagccg
      241 ccagcggcac cacaatcgcc ctctatctgc gcatgagcgt gcagaaaaat tttatcaccg
      301 ccagcaacct ggtcatcacc ccggacctca ccctgggcgt cagcgccatg ctgaacaatc
      361 ccggcgcgaa aacacgcctc actacccagg acggcacgaa cttcatcacc accccgcaac
      421 acctggcacc catcgccggc cagctcagcg cggggatcag cattgccaaa ggaaattgga
      481 gcatcacagc ccgctatacc ggaaccgcgg gcggaaattg gtcgggtcag agcctgcaag
      541 cgggggtgct ggtcaggttc taacccccgg ccaatagctt gggcccgtgc ccccgggggc
      601 atgggcccaa gtgcgttttt gggcccaagt gcgttttggg gctgggtccg gggttcttgg
      661 tccctaccct aatggcactt tgcccagccc tccgggccgg tccaggatgt aggtcggcag
      721 ggctgtgccg ctgatgtggc cgcggaggtt ttggaggagt tggcggccgc gctcctgggg
      781 gacgtggaag cgggcggtgc cgggggcggg gtccagctgg tgcaagtagt aaggttttat
      841 gcgggcgcgc agcatggcgc ggaaaaggcc ggcgagggcg gtttcgttgt cgttgacacc
      901 tgcgaggagc acggtctggc cgagcagggg aataccgagg cgggtgagtt tgcggagtgc
      961 gctggtgacg tcctgggtca gctcgcgcgc atggttggcg tggatggcga tgtagagcgg
     1021 tttttcgatg tcgagtgcgt cgagcagggc atcgtcgatg atcgtggggt cggcgatggg
     1081 cgcgcgggtg tggatacgca gcagctcgat atgcgggatg tcctgcagcc ggcgcaggat
     1141 ggcgccgagg cggcggggcg agaggatgag cgggtcgccg ccggtgagga tgatctcgcg
     1201 gatgccgggg cgggactcaa tataggcata ggcggcgtcg agttcggctt cggtgagcag
     1261 cccgccatcc ggccccacct gctcgcgccg gaagcagaag cggcaataga ccgggcaggc
     1321 gagcagcggc ttcagcaggg cgcggtccgg gtagcggtgg acgatgccgg gaatgggcga
     1381 gagcgcctcg tcggcgatgg ggtcggtgct ttcatgcggg gcggtgatga gttccgccgg
     1441 gtcggggatg aattgcaggc cgatcggatc gtgcttgtcc gtgatgaggg cggccagggc
     1501 cggcggcacg gcgatggcgt agcgcgcggc gaccgcctcc actccggcgc ggtcctcggg
     1561 cgcgagcagg ccggattcca ccagctcttg cgggcggcgc agcgtgcggg gtttgggggg
     1621 cgagataccg tcgggcatct gggtcgtgta tcctgccgcg catggcctct caaccctggc
     1681 agacattgcc tgaccgcatg ccccgtttgc ttcgccgcaa ccgcctcgcc caggcggtgc
     1741 gcgctttctt cgccgcgcgc ggctacacgg aggtggacac gccttatgcc gtgatggcgc
     1801 cgggcgagga ggtgcatctg cgggcgcgtc cggccgggga tttgtggctc aacacctcgc
     1861 cggaattcgc catgaagaag ctgctggctg gcggctccgg gccgattttc cagctggcgc
     1921 gggtatggcg cgatgagccg tggtcgccca cccatgcgcc cgagttcacc atgctcgaat
     1981 ggtattcgct ggg
//
LOCUS       DASQCV010000198         4427 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3026684, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000198 DASQCV010000000
VERSION     DASQCV010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4427
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3026684"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..231
                     /locus_tag="VEQ16_03075"
     CDS             <1..231
                     /locus_tag="VEQ16_03075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003628551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HYP62840.1"
                     /translation="STHSQAGEWVDRLLVLPGFLIGEGEPDPADCAASLRLTGHFLAR
                     DVFGARHRPLPPARALLYENLCAKQQGERHAD"
     gene            221..2446
                     /gene="parC"
                     /locus_tag="VEQ16_03080"
     CDS             221..2446
                     /gene="parC"
                     /locus_tag="VEQ16_03080"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007002618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009340 - DNA topoisomerase IV complex
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HYP62841.1"
                     /translation="MPIDMGGQVEELALGNALSERYLAYALSTIMSRSLPDVRDGLKP
                     VHRRLIYAMHQLKLDPRSGFKKCARVVGDVMGKFHPHGDSSIYEALVRLAQDFSSRYP
                     LIEGQGNFGNIDGDNAAAMRYTESRLTEIAEYLLRGIDENAVDFRPTYDGEESEPVVL
                     PGAFPNLLANGAAGIAVGMATSIPPHNVGEICAASLHLIEHPQADTASLLKHLRGPDF
                     PTGGELVEDEATLIAAYETGRGSLRTRAKWVREEGKHGTWMIVVTDIPYQVQKSRLVE
                     QIALLLTEKKLPLLGDIRDESAENIRLVLEPKSRTVDPDMLMASLFRATQLESRFALN
                     MNVLDGRTPRVMGLKGILRAWLDHRHEVLIRRTNHRLEAIARRLEILDGYIKVFLNLD
                     EVIRIIRYEDEPKAVLIKTFTLTDVQAEAILNMRLRALRKLEEMEIRNEHKKLSAEQK
                     GLQGLLKDEKKRWVKIGEEIAEVQEKFGKGPLGARRTKISAAAPVVEIVAEALVEREP
                     ITIILSEKGWIRAQKGHLAEGAELKFKEGDKLAHMVRCESIDKIALLATNGRVYTLKG
                     ADIPRGRGDGQAIRLMIELANEDGVLRLFVPDAAQKYLVASSAGRGFLLPGSELASER
                     RAGKTILTLKPGEEWAACVAAKGDHVAVIGENRKLLVFPVSELPEMPRGAGMQLQKYK
                     DGGMGDMKTFALAQGLSWRLGDKVRTEQKLTDWLGSRAQAGRLPPNGFPKSGKFGDEP
                     G"
     gene            2507..2806
                     /locus_tag="VEQ16_03085"
     CDS             2507..2806
                     /locus_tag="VEQ16_03085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62842.1"
                     /translation="MAKRSLFNPWAFTSMAMQSAMLTFEANQVIAMRLAKLAMGGAYA
                     NREAERMVTEKVQAMAEAGRAVTMAALGGKSNLGGDKVVKLYRRKVRANRRRLSR"
     gene            2911..3117
                     /locus_tag="VEQ16_03090"
     CDS             2911..3117
                     /locus_tag="VEQ16_03090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62843.1"
                     /translation="MTTRRNFAASFLGAALAVGFGATVSAQPLPPPARLGAAAAPPPR
                     NRSTASPRKRHVGPRPLELVPRPL"
     gene            complement(3376..3816)
                     /locus_tag="VEQ16_03095"
     CDS             complement(3376..3816)
                     /locus_tag="VEQ16_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HYP62844.1"
                     /translation="MTEYFKPEDDSPETAIATIGDELALFDDWMERYEFIIELGRKLP
                     AYPAAWQDEAHRVQGCQSQVWLAALEDNGKLFFTGASDAAIVSGLVALVLRVYSGRTR
                     PEILSTPAKFLHDLGLIGALSTNRGNGVAAMVERIQDMARAPGD"
     gene            complement(3813..>4427)
                     /locus_tag="VEQ16_03100"
     CDS             complement(3813..>4427)
                     /locus_tag="VEQ16_03100"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HYP62845.1"
                     /translation="PHAIATPEAAHIFVSLLEAIVDRQADALEALRSELDHMSHKIFH
                     HRMAGKARATELEMQAMLVTLGRSYDTISFLRESQLGVARIAPYAGTATGWMPKPLRQ
                     RLDSVLKDVTSLNEYSTHLTDKVQFLLDSTLGLINIAQNSLIKVLTIVSIVGIPPTLI
                     AGIYGMNFHDIPELSWSYGYGYAWAVMVASAVLPLLWFRKKGWI"
BASE COUNT          815 a         1254 c         1512 g          846 t
ORIGIN      
        1 tccacccatt cccaggccgg ggaatgggtg gacaggctgc tggttttgcc cggatttctc
       61 attggcgaag gggagccgga cccggcggat tgcgccgctt ccttgcgcct gaccgggcat
      121 ttcctggccc gcgacgtgtt cggcgcgcgc caccgccctc ttccaccggc gcgggcgctt
      181 ctttatgaaa acctctgcgc gaaacagcag ggagagcgac atgccgattg atatgggcgg
      241 gcaagtggaa gagctggcgc tggggaatgc gctctctgag cgttatctgg cctatgcgct
      301 ctccaccatc atgtcgcgct cgctgcccga tgtgcgcgat gggttgaagc ctgtgcacag
      361 gcggctgatc tatgccatgc accagttgaa gctggacccg cgctcgggct tcaagaaatg
      421 cgcccgcgtg gtgggcgacg tgatgggcaa gttccatccg catggcgaca gctcgatcta
      481 tgaggccttg gtgcggctcg cgcaggattt ttcttcgcgc tacccgctga tcgaggggca
      541 ggggaatttc ggcaatatcg acggcgataa tgccgcggcc atgcgttata cggaatcgcg
      601 ccttaccgag atcgcggaat atctgctccg cggcatcgat gagaacgcgg tggatttccg
      661 gccgacctat gatggcgagg agagtgagcc ggtcgttctg ccgggcgcat tccccaatct
      721 gctcgccaat ggcgccgccg gcatcgcggt gggcatggcg acctcgattc cgccgcataa
      781 tgtgggggaa atctgcgcgg cgtcgctgca tctgattgaa catccgcagg cggatacggc
      841 atcgctgctg aaacatctgc gtgggccgga ttttcccacc ggcggcgagc tggtggagga
      901 tgaggcgacg ctgattgccg cgtacgagac cgggcgcggc tctctgcgca cgcgcgccaa
      961 atgggtgcgc gaggagggca agcacggcac ctggatgatc gtggtgaccg atattcccta
     1021 ccaggtgcag aaatcccggc tcgttgagca gatcgcgctg ctgttgacgg agaagaaact
     1081 gccgctgctg ggcgatattc gcgatgagag cgcggagaat atccggttgg tgctggagcc
     1141 gaagagccgc acggttgatc ccgacatgct gatggcctcg ctgttccgcg ccacgcagct
     1201 ggagtcccgt tttgcgctca atatgaacgt gctggatggc cgcacgccgc gcgtgatggg
     1261 gctgaagggg attctgcgcg cctggctcga tcatcgccac gaggtgctca tccgccgcac
     1321 caatcacagg ctggaggcga ttgcccggag gctggagatt ctcgacggtt atatcaaggt
     1381 ttttcttaat cttgacgagg tgatccgcat catccgctat gaggatgagc cgaaggcggt
     1441 gctgatcaag acgtttacgt tgacggatgt gcaggccgag gcgattctca atatgcggct
     1501 gcgcgctttg cgcaagctgg aggagatgga gatccgcaac gagcataaga agctcagcgc
     1561 ggagcagaag ggactgcagg gcctgctgaa ggatgagaag aagcgttggg tgaaaatcgg
     1621 cgaggagatt gccgaggttc aggaaaaatt cggcaagggg ccgctcggcg cgcgcaggac
     1681 gaagatttcc gcggcggcgc cggtggtgga aattgtcgcc gaggcgctgg tggagcgcga
     1741 gccgattacc atcatcctgt ccgagaaagg ctggatccgc gcgcagaaag gccatctggc
     1801 cgagggtgct gaactgaaat tcaaggaagg cgacaagctt gcgcatatgg tgcgctgtga
     1861 atcgatcgac aagattgcgc tgctggctac gaatgggcgc gtctatacgc tgaagggcgc
     1921 ggacatcccg cgcgggcgcg gcgatggcca ggccatccgc ctgatgatcg agctggccaa
     1981 tgaggatggt gtgctgcgcc tgtttgtgcc cgatgcggca cagaaatatc tcgtcgcctc
     2041 gtcggccggg cgcggcttcc tgctccctgg cagtgagctg gcctccgagc ggcgcgcggg
     2101 caagaccatc ctcacgttga agccgggtga ggaatgggcg gcctgcgtcg ctgccaaggg
     2161 tgaccatgtc gccgtcatcg gcgagaatcg caaattgctc gttttccccg tcagcgaatt
     2221 gccggaaatg ccgcgcggcg ccggcatgca gcttcaaaag tacaaggatg gcggcatggg
     2281 cgatatgaaa accttcgcgc tggcgcaggg gctgagctgg aggttgggcg acaaggtacg
     2341 gacggagcag aaactcaccg actggctcgg cagccgcgcc caggctgggc gcctgccgcc
     2401 gaacggcttc cccaaatccg gcaagttcgg cgacgagccg ggctgaaact ttcttggtgt
     2461 ttccttgctg aatgcctaaa ttggcaaggc cagcaaggag accgccatgg ccaagcgcag
     2521 cttgttcaat ccctgggctt tcaccagcat ggccatgcag agcgccatgc ttaccttcga
     2581 ggccaatcag gtgatcgcga tgcgcctcgc caagctcgcc atgggcggcg cttatgcgaa
     2641 ccgcgaggcg gagcggatgg tgacggaaaa agtccaggcg atggccgaag ccggacgcgc
     2701 cgtgaccatg gcggcactcg gcggcaaatc caaccttggc ggggacaagg tggtgaaact
     2761 ttaccgccgc aaggtgcgcg ccaaccggcg ccggctgagc aggtaacaag ccgattaaag
     2821 ttttggctgg aaccgtgtgt tgccataatt ctgcgctgct ctcggcgcag ctaaacccat
     2881 ctttcatcag catgtgtgaa tgagggaaaa atgacgacac gccgtaattt tgccgcgtcc
     2941 ttcctcggcg cggcgctggc cgtagggttt ggcgccaccg tcagcgccca gcccttgccg
     3001 ccgcccgccc ggctgggggc cgccgccgcc ccgccgccgc gaaaccgttc caccgcgtcc
     3061 cccaggaaac gtcatgtggg ccccaggcca ctggaactgg tcccgcggcc gctataactg
     3121 gatcggcggc cgctacatac cccgccaccg cggctggaac cgctggaacg acggccgctg
     3181 ggtcgtcagg aacggacgct gggtttgggc tccggggttc tggtcctgac ttagagactg
     3241 tttcataagt ctactctggc ggccgtcaag cggcgatctt ctgcgctccg gtgctcacgt
     3301 actgatgtac gctccgctcc ggtgctcgaa aatcaccact tgacgactca ccagagcgac
     3361 ttctgaaaca gtctcttaat cccctggtgc tctggccatg tcctggatgc gttccaccat
     3421 ggcggcgacg ccgttgccgc ggttggtgga gagggcgccg atgaggccga ggtcgtgcag
     3481 gaatttggcg ggtgtgctga ggatttcggg gcgggtgcgg ccggaataga cgcgcagcac
     3541 gagggcgacg aggccagaga caatggcggc gtctgaggcg ccggtgaaga agagtttgcc
     3601 gttatcttcg agggcggcga gccagacctg gctttggcag ccttgcacgc ggtgggcttc
     3661 gtcctgccat gcggcgggat aggcgggtag cttgcggccg agttctatga tgaactcgta
     3721 gcgttccatc cagtcgtcga acagcgccag ctcatcgccg atggtggcga tggcggtctc
     3781 ggggctgtcg tcttccggtt tgaaatattc agtcatatcc agcctttttt acggaaccat
     3841 aggagcggca gcacagccga tgccaccatc acggcccagg catagccata gccgtagctc
     3901 cagctgagtt ccggaatgtc gtggaagttc atgccgtaga tgccggcgat gagggtgggc
     3961 ggaatgccga cgatggagac gatggtgagc accttgatga gcgagttctg cgcgatgttg
     4021 atgaggccga gtgtggaatc gagcaggaat tgtaccttgt ctgtgaggtg agtggaatat
     4081 tcattgagcg aggttacgtc cttcagtacc gaatccagcc tttgccgcag cggcttgggc
     4141 atccagccgg tggcggtgcc ggcatagggg gcgatgcggg cgacgccgag ctggctttca
     4201 cgcaggaagg agatggtgtc gtagctgcgc ccgagcgtga cgagcatggc ctgcatttca
     4261 agctccgtgg cgcgcgcctt gccggccatg cggtggtgga agattttatg cgacatatgg
     4321 tccagctcgc tgcgcagcgc ttccagcgcg tcggcctggc ggtcgacgat ggcttccagc
     4381 agggagacga agatatgggc cgcttccggc gtggcgatgg cgtgcgg
//
LOCUS       DASQCV010000199         3627 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1699662, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000199 DASQCV010000000
VERSION     DASQCV010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3627
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1699662"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3620)
                     /locus_tag="VEQ16_03105"
     CDS             complement(<1..3620)
                     /locus_tag="VEQ16_03105"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HYP62846.1"
                     /translation="MAIEPQHPAYVIYTSGSTGTPKAVVVEHRNIANSNAARASFYRS
                     LSQNRFLLLSSIAFDSSIAGVFGSILSGGTLVLSAALTADSAIAAIGRHQANSFLTVP
                     SFYAALIESLSEAAPELRAVILAGEACPSELPIQHRRIFPTTLLANEYGPTECTVWSS
                     VHRWSERDALRVPIGRPIWNTRVYVLDDYMQPVPAGVAGELYIAGAGLARGYLGRFGL
                     TAERFVADTYGGAGSRMYRSGDVARWRADGVLDFLGRADGQIKLRGFRIEPGEIEAVL
                     LRHAGIAQAAVVLRADAGGGKRLIGYVVGRGRAAPGGGELRAHVGRHLPEYMVPSAFV
                     ELEKLPLTPNGKLDRLALPAPVVGGGEGVRQAARTPQEEILCGLFAEVLGVGSVGIAD
                     NFFALGGDSIMSIQLVSRARKAGLGITPRVVFQHQTVEALAAAAVLVGEKLPTLPDVA
                     AGPLPLTPIMRWLLERGGGIESFNQAMLLQVPAGMREQDLLAALAAVLDHHDALRLRL
                     VSSGAEDHPSLEIQPAGAVNAKSCLRRLDVRALDADARAACIMREAKVAQARLSPAAG
                     MMVQATWFEAGAHESGRLLLTIHHLAIDGVSWRILVPDLATAYAAIARGEAVAFAPRG
                     TSFRRWAHRVAGEAQSARRVAEVGFWTALASAPSLALARGPLDPRRDLGSRAGHLSLR
                     LPAAVTAALLTRVPAAFHAGVNEVLLAGFVVAIVDWCRRRCGLGGSAVLVDVEGHGRE
                     EIFADVDLSRTLGWFTSLFPVRLDVGGLDISEALAGGPALGRALKLIKEQLHAVPDRG
                     LGFGLLRYLNEQTAVQLAQLPQPEIGFNYLGRFPAPGLDDWSVAGETMRLDSGDGPLS
                     LAHGIEVNALAIEGRGDEGATLLATWSWARALFTQDEIYDLAQGWFRALEALAWHAAQ
                     PGAGGRSPCDLPLIALTQNEIEYLESKYPQLEDVLPISPLQEGLLFHALYDAQAADVY
                     TVQLVLALEGPLDRAALQTAVEALVERHASLRAGFAHAKLSRPVQIIVASVRPPWRDF
                     DLSLLEAAHREQRLAHVLAEDRAERFEVSSPPLLRVSLIRLREGEHRLVLTFHHLLMD
                     GWSTPVLVQELLALYAQKENVALPRAAAYRDYLAWIVAQDRAAAIAGWRDALAGLEEP
                     TRVAGHKPAGTPVASQQLLLALSEELTAALGEQARRQGLTINTFIQTAWAIVLGRLLG
                     RA"
BASE COUNT          755 a         1342 c         1010 g          520 t
ORIGIN      
        1 tccgcgcggc cgagcagacg gcccagcaca atcgcccaag cggtttggat gaaggtgttg
       61 atcgtcagac cctggcggcg cgcctgctct cccagcgccg ccgtcagctc ctcgctcagc
      121 gctagtagga gctgttgcga cgcaaccggg gtacccgcag gtttatgccc tgccacccgg
      181 gtgggttctt cgagccccgc caaagcgtcc cgccagccgg caatggccgc cgcgcggtcc
      241 tgcgcaacaa tccaggccag ataatcccga taagccgccg cgcgcggcag cgcgacattc
      301 tccttctggg cataaagcgc gagcagctcc tgcaccagca caggcgtcga ccagccgtcc
      361 atcagcagat ggtggaaggt gagcacaagc cggtgctccc cctcgcgcag ccggatcagc
      421 gagacgcgca acagcggcgg cgagctgacc tcgaatcgct ccgcgcgatc ctccgccagg
      481 acatgcgcca gccgttgctc gcggtgtgcg gcctcgagca aggacaggtc gaaatcacgc
      541 cagggcggcc gcacgctcgc gacaatgatc tgcaccggcc ggctgagctt cgcatgcgca
      601 aagcccgccc gcagactcgc atggcgctcg acaagcgcct ccactgccgt ctgcaatgcg
      661 gcccggtcga gcgggccctc caaggcgagc accagctgca ccgtatagac gtccgccgcc
      721 tgcgcatcat agagcgcgtg gaacagcagc ccctcctgca acggagatat cggcagcacg
      781 tcctccagtt gcggatattt gctttcgaga tactcaatct cattttgggt gagcgcgatc
      841 agcggcagat cgcaggggct gcggccaccg gcaccgggct gcgcggcatg ccacgccaga
      901 gcctccaggg cgcgaaacca accctgcgcc agatcataaa tctcatcctg cgtgaacagc
      961 gccctggccc acgaccaagt cgccagcagc gtggcgccct catccccgcg accctcgatg
     1021 gcgagtgcat tgacctcgat gccatgcgca agcgatagcg ggccatcccc gctatcgagc
     1081 cgcatcgtct cgccggcaac actccagtcg tctaatcccg gtgccggaaa acgtccgagg
     1141 tagttgaagc cgatctcagg ctggggaagc tgcgcaagct gcaccgctgt ctgctcattg
     1201 aggtaacgca gcaagccaaa cccaagccca cggtcgggca ccgcgtgcag ctgctccttg
     1261 atcagcttga gcgcgcgccc cagagccggc ccccccgcca gggcctccga aatatccagc
     1321 ccaccgacat caagccgcac cggaaacagg ctcgtgaacc accccagcgt gcgcgagagg
     1381 tccacatcgg caaaaatctc ttctcgcccg tgcccctcga catcaaccaa taccgcgctg
     1441 ccgccaagac cgcagcgccg ccggcaccag tccacaatgg ccaccacgaa gccggccagc
     1501 agcacctcat tgacaccggc atgaaatgcc gccggcactc gcgtcagcag agccgccgta
     1561 accgcagccg gcagccgcag actaagatgt ccagcacggc tgcccagatc acgccttgga
     1621 tcgagcgggc ccctcgccaa cgcaagcgac ggcgcgctcg ccagtgcggt ccagaaccca
     1681 acctccgcca cgcggcgcgc agactgcgcc tcacccgcaa cccgatgtgc ccagcgacga
     1741 aacgatgtgc cgcgcggcgc aaaggcaacc gcctctccgc gcgcaatcgc tgcataggct
     1801 gtggcaagat caggcaccag gatgcgccag gagactccat cgatcgcgag gtgatggatc
     1861 gtcagcagca gccggccact ctcgtgcgca cccgcttcaa accatgtcgc ctgcaccatc
     1921 atgccggccg caggcgaaag ccgcgcttgc gcaaccttcg cctcgcgcat gatgcacgcc
     1981 gctctcgcat ccgcatcaag cgcgcgaaca tccaggcgcc gcagacagct cttcgcattc
     2041 acggctcccg ccggctgtat ctcaagcgag ggatggtcct ccgcgcctga actcacaagg
     2101 cgcagccgaa gcgcatcatg atgatcaagc acagccgcca gcgcggcgag caaatcctgc
     2161 tcgcgcatgc cggcaggcac ctgcaacagc atcgcctgat tgaagctctc gatccccccg
     2221 ccacgctcca gcagccagcg catgatcggg gtgagcggca atggcccagc agcaacatcg
     2281 ggcaacgtcg gcagcttctc gccgacaagc accgccgccg cggcaagcgc ctcaaccgtc
     2341 tgatgctgga acaccacgcg cggcgtgatc ccaagccccg ccttgcgcgc ccggctcacc
     2401 agctggatcg acatgatgct gtcgccgccc agcgcaaaga aattgtccgc aatccctacc
     2461 gacccaacgc cgagcacctc cgcaaaaagt ccgcacagga tctcctcctg cggcgtgcgc
     2521 gcagcctgcc tcaccccttc cccccctccc actacaggcg caggcaaggc caaacggtcg
     2581 agcttgccgt tcggcgtgag cggaagcttc tccagctcca caaacgcaga cggcaccatg
     2641 tactccggca gatgccgccc cacatgcgcg cgcaactcgc ccccacccgg agccgctctc
     2701 ccgcgaccca ccacatagcc gatcagccgc ttgcccccgc ccgcatccgc acgcaacaca
     2761 accgcagcct gcgcaatccc agcatgccgc agaagaacag cctcgatctc cccaggctca
     2821 atgcgaaaac cgcgcagctt gatctgtcca tccgcacggc caaggaaatc cagaaccccg
     2881 tccgcacgcc agcgcgcaac atccccgctg cggtacatcc ggctccccgc acccccatac
     2941 gtgtcggcga caaaccgctc cgcagtcagc ccaaaacgcc ccagatagcc gcgcgctaaa
     3001 cctgcccccg ctatgtaaag ctcccccgct accccagccg gtacaggctg catataatcg
     3061 tccagaacat aaactcgcgt gttccagatc ggacggccaa tggggacacg cagcgcgtct
     3121 ctttcactcc aacgatggac agacgaccag acggtgcatt ccgtcggacc gtattcattg
     3181 gcaagcaagg tggttggaaa aattcggcga tgctggatcg gcaattccga gggacacgcc
     3241 tctccggcca agatcaccgc ccgcagctct ggcgctgctt cgctaaggga ttctatcagg
     3301 gcagcgtaaa acgacggcac agtcaaaaag gaatttgcct gatgccgccc aattgcggcg
     3361 atggctgagt ctgccgtcag cgccgcagat aacaccaatg tgccgccgct gaggatgctg
     3421 ccgaatactc ccgcaatcga actgtcaaac gcgatcgacg agagcagcag gaaccggttc
     3481 tgagataaac ttcgatagaa tgaagctcgc gcagcattgg aatttgcaat attccgatgc
     3541 tcgaccacaa cggccttcgg cgttccggtg gagcccgagg tgtagatgac ataggcgggg
     3601 tgctgcggct cgatcgccac ggcgggg
//
LOCUS       DASQCV010000200         1654 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1037251, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000200 DASQCV010000000
VERSION     DASQCV010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1037251"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..275
                     /locus_tag="VEQ16_03110"
     CDS             <1..275
                     /locus_tag="VEQ16_03110"
                     /inference="COORDINATES: protein motif:HMM:NF014672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DsrE family protein"
                     /protein_id="HYP62847.1"
                     /translation="VQSGDQVTLMLFADSVLMAVEGSGAKLVPVGPPNRYEEIASHPN
                     VTLMVCKPCVDARGLNTATLDKRIKLAGMNEFHAAATQPDARIVNF"
     gene            403..>1654
                     /locus_tag="VEQ16_03115"
     CDS             403..>1654
                     /locus_tag="VEQ16_03115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011236184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
                     /protein_id="HYP62848.1"
                     /translation="MGNFRTIDRQTGFLLPPSVDEWLPEKHLARFVVEVIEGLDASAM
                     CGAYRGSGSASYHPRLLLGILIYGYATGVFSSRKLERATYDSVAFRFIAANDHPDHDT
                     IAAFRRRFAKEIETLFVQVLLLAREMGLLKVGAVALDGTKIHANASKHSALSYEQAGK
                     IEAQLKAEVAELMAKAEAADKADLPDGLSIPDELARREERLKKLAEARAKIEARAKER
                     YERELAEHRAKLAAREARQKASGRKPGGKGPRPTDQINLTDEESRIMPVSGGGFEQCY
                     NAQAVVAEGSLLVVASDVAQAPNDKQQLEPMLAKTLALPEALGRAETMLADNGYFSEA
                     NVKACGAAGVEPLIALGRDAHHQSLRERFADAPPPENPTPVEAMAHRLKTPEGKKLYA
                     KRKHTPEPVFGIIKSVLGFRQFLLR"
BASE COUNT          330 a          486 c          531 g          307 t
ORIGIN      
        1 cagtgcaaag cggcgatcag gttaccctca tgctgttcgc tgattcggtc ttgatggctg
       61 ttgaaggttc tggcgccaag ctcgtgccgg ttggaccgcc caatcggtac gaggagatcg
      121 ccagccatcc caatgtcacg ctcatggtgt gtaagccgtg tgtggacgcg cgtgggctga
      181 ataccgccac tcttgacaag cgcatcaaac tcgccggcat gaatgaattc cacgcggcag
      241 caacgcaacc tgatgctcgc attgtaaatt tttaggctgg ccaaaaacgg cggcggccct
      301 gcgggcacct tcgctactct agcagcctgt tggacttaaa gccgtcggcg gcgcgggata
      361 aggttgggcc agtgattctt gcaagctttg gagcgctggc cgatgggcaa cttccgcacg
      421 attgaccgcc agacgggatt tcttctgccg ccatcggtcg acgagtggct gccggaaaag
      481 catctggccc gttttgtggt ggaggtcatc gagggtctgg acgcatcggc gatgtgcggc
      541 gcctatcgcg gctcggggtc ggcgagctat catcctcggc tgttgcttgg cattttgatc
      601 tacggctacg ccacgggcgt gttttccagc cgcaagctgg agcgggcgac ctatgattcg
      661 gtggctttcc gtttcatcgc ggcgaacgat catcccgatc acgacaccat cgcagcgttc
      721 cggcggcggt ttgcgaagga gattgagacg ctgttcgtgc aggtcctgct gctggcgcgg
      781 gagatgggtt tgcttaaggt gggcgcagtc gcgctggacg gcacgaagat ccacgccaac
      841 gccagcaagc acagcgcgct ttcttacgag caggcgggca agattgaggc gcaactgaag
      901 gccgaagtcg ctgaactcat ggccaaggca gaggcggcgg acaaggctga ccttcctgac
      961 ggcctgtcga tcccggacga acttgccagg cgcgaggaac ggctcaagaa gctcgccgag
     1021 gctcgtgcga aaatcgaggc gcgcgccaaa gagcgttacg agcgggaact ggccgagcat
     1081 cgcgccaagc tcgccgcgcg tgaggcgaga cagaaggcct caggcagaaa gcctggcggc
     1141 aaggggccgc gcccaacgga tcagatcaat ctgacagacg aagaatcgcg catcatgccg
     1201 gtttcgggcg gcggtttcga gcaatgctac aacgctcaag ccgtggtggc ggaaggcagt
     1261 ctcttggtgg tcgccagcga tgtggcgcag gcgcccaacg acaagcagca actcgaaccg
     1321 atgctggcca agaccctcgc cctgcctgaa gcattgggca gggctgaaac catgctggcc
     1381 gataacggct atttcagcga ggccaatgtg aaagcctgcg gcgctgctgg cgtcgagccg
     1441 ctcatcgcct tgggccggga tgcccatcat caatccttgc gcgagcgttt tgccgatgcg
     1501 ccgccgccag aaaacccaac gcccgtggaa gccatggccc accgtcttaa gacgcccgag
     1561 ggcaaaaagc tctacgccaa gcgcaaacat acccctgagc cggtgttcgg catcatcaaa
     1621 tctgtgctcg gattccgcca gtttctgctg cgcg
//
LOCUS       DASQCV010000201         1643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1700492, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000201 DASQCV010000000
VERSION     DASQCV010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1643
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1700492"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(329..404)
                     /locus_tag="VEQ16_03120"
     tRNA            complement(329..404)
                     /locus_tag="VEQ16_03120"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(368..370),aa:Glu,seq:ctc)
     gene            complement(425..1303)
                     /locus_tag="VEQ16_03125"
     CDS             complement(425..1303)
                     /locus_tag="VEQ16_03125"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase domain-containing protein"
                     /protein_id="HYP62849.1"
                     /translation="MRLSLRQVAAGGRSRLREALADLVDRPYLPIPADDTDLFLVSYP
                     KSGINWLKWLMATANLRLAGDPREITFFNHSDFIADLHSVRRVGPPGLAVPGCRCFTS
                     HAPWMRRYRKVIYLVRDPRHVMPSYHTHLTSRGAWRGTLEQLVAHEQFGIRAWVSHVG
                     GWLDRVDATASFTLLRYEDLRARTAEELVRIYGLLGWRLDAAMAAQVVAQVSPQRMRE
                     DEARFNEGHPKRRRTEFVRKGAFGGPRRPVPEALLSQIETEAGPLMRRLGYLGDEAED
                     ASPRERVRLASPGGLR"
BASE COUNT          279 a          556 c          544 g          264 t
ORIGIN      
        1 agcttgcttc tgagtccccc ttttgcgccg gctgcacagt gatgtgcccg gatgcatcgc
       61 ccgtccggtc accgctatga acccggctca cgccactatc agcgagggaa cgcttcaatt
      121 cacgcgtgcc cagcgccgcc cgtgtagcgc ttgcccaccc tgaatgcagg atgatcaagt
      181 accccgcgcg acggcagccg gtcggcgcag ccagaaccgc tcccgaacgc gggcgttcag
      241 tggcgtattc taccccacca gctacctaaa ttgcgcatga cgatgccgtg ggaattgagg
      301 agtctgactg taagttattg aaatcacttg gcgtccccta ggggattcga acccctgtta
      361 ccgccgtgag agggcggtgt cctgggccac tagacgaagg ggacagcggc cggaggggcc
      421 tctcttagcg gagaccgccc gggcttgcaa gccgaacccg ttcgcgcggg cttgcatcct
      481 cggcctcgtc ccccagatag ccgaggcggc gcatcagcgg gccggcctcg gtctcgatct
      541 ggctgagcag cgcctcgggc accggccggc ggggaccgcc gaacgccccc ttgcgcacga
      601 actccgtccg gcgccttttc ggatggcctt cgttgaaccg cgcctcgtcc tcgcgcatgc
      661 gctgcgggct cacctgcgcc accacctgcg ccgccatcgc ggcatccagg cgccagccga
      721 gaagcccgta gatgcggacc agctcctctg ccgtgcgggc acgcagatcc tcatagcgca
      781 gcaaagtgaa ggaggccgtc gcatcgaccc ggtcgagcca gccgccgaca tggctgaccc
      841 aggcgcggat gccgaactgc tcgtgggcca ctagctgctc cagcgttccc cgccatgccc
      901 cgcggctggt cagatgcgtg tgataggagg gcatgacatg gcgcggatcg cgcacgagat
      961 agatcacctt gcggtagcgg cgcatccagg gcgcatggct ggtgaagcaa cggcagccgg
     1021 ggacggccag cccgggcggt ccgacgcgcc gcacgctgtg aagatcggcg atgaaatcgg
     1081 agtggttgaa gaaggtgatc tcgcgcgggt cgcccgcgag gcggagattg gccgtggcca
     1141 tcagccattt cagccaattg atccccgact tcggatagga gaccaggaag agatcggtgt
     1201 cgtccgcggg gatgggcaga tagggccggt ccaccagatc cgccaaggcc tcgcgcagcc
     1261 ggctgcgccc gccggcggcc acctggcgaa ggctcagccg catcgtcgcc acgtccattc
     1321 cagccagatc gaccctcgcg gcatgagtga cccccgtcga ctcccgcctc gcgcgcgccg
     1381 ggaaaaagtg cccctcgccc gcccggatat gatgtaccgg acagcggatt ttgcaaatag
     1441 ccgttgtgac ggctttgcag cttttcagtg tgaggcggcg ctcacccggg gattgtgtcg
     1501 gcgaacagcc tgaccagggg cgcaggcgat ccctgctccg cggacggggc ttccgcctcc
     1561 tgggtgagat agccgaggcg gagcatcagc ggtccggcgg cttccccgat gagccgcatg
     1621 gcggagagcg ggatggctcc aat
//
LOCUS       DASQCV010000202         3451 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2031291, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000202 DASQCV010000000
VERSION     DASQCV010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3451)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3451)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3451
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2031291"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(117..623)
                     /locus_tag="VEQ16_03130"
     CDS             complement(117..623)
                     /locus_tag="VEQ16_03130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3429 domain-containing protein"
                     /protein_id="HYP62850.1"
                     /translation="MFKQPFSMAVLFSLVGTIPFLILGAIVLLDPLQSATAIEVLISY
                     GAVVLSFLGAVHWGFALRDTAHPVNGVPLPPAVQGAERDLLVFGVIPALIGFVALSVM
                     IHFRLPALALFIELAGFFITIVVETIGRGRGVVAGNYLALRWGVSVIVLLVLLLVLGA
                     VLTGMRVG"
     gene            complement(636..2474)
                     /locus_tag="VEQ16_03135"
     CDS             complement(636..2474)
                     /locus_tag="VEQ16_03135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HYP62851.1"
                     /translation="MVDPTPCSCGSGLRRARCCALDFATLSPPEATQALAPMLAQAEA
                     ALAAGDLTTAENNARHMLELAPGREDALMFLYRTSRQAQKFAAAEALIRRVVALNPNN
                     FWATNELTLMLLNRGQLAEAELHARNAIRIAPQNAQAHNLMGLVLTEANRPLIGEYHY
                     RRVLELAEGEEPITLANLAWNLKNQGRIDEARELYKRSMALKPGVLQTVLGYAKMEEA
                     DRKFDCSLELLDEAETLLPDNPSVQLTRATVLARQKKREQALAILHEPEDGRVKLGPA
                     EMSEKGRLLDQMGRFDEAFECFDLGKKRAIEMGARTYMADAASEQAARLKGFFTERRL
                     KTLPRAEVRAGMPQPVFIVGFPRSGTTLIEQTLTVHPQISAGDELPYINDITQIMPRL
                     LASPLSYPEALAELWMGDQRDGLNELRDYYLNRAAKAGIFKEGAAFFTDKMPLNETHL
                     GLISLLFPASPIIHVIRHPLDVLLSVYSNHLTHGFFCAAQMETIAQHYNLVADLILHY
                     RNNVKDMRYLPVRYEDVVLDQEANVRRVLDFIGVEFDPRCLSFEENTRYARTASYAQV
                     TEKLYDRSRYRYRPYLKHLGPVLDMLKPVIERLGYVIDQPDRLAAE"
     gene            complement(2523..2858)
                     /locus_tag="VEQ16_03140"
     CDS             complement(2523..2858)
                     /locus_tag="VEQ16_03140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62852.1"
                     /translation="MQTVTQFATPVTRPLTADAAMPVAQATDMERLALALLGCAEKYE
                     IEAGLVVQITPPLSMEGLAGLAGIGEYSTALLLDYLLSAGVIVQRRQRLLLAQPAALH
                     QLALGAAPA"
     gene            2959..3270
                     /locus_tag="VEQ16_03145"
     CDS             2959..3270
                     /locus_tag="VEQ16_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012223229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein YjdM"
                     /protein_id="HYP62853.1"
                     /translation="MSPIPSCPQCTLADSYLQGAQYVCNICGHEWPAEEAEEVVRDAN
                     GNVLVSGDSVTLIKDLKVKGSSTTLKVGTKLKNIRVVPGGDHAVEHGGYMLKQEFLRK
                     A"
BASE COUNT          739 a         1143 c         1000 g          569 t
ORIGIN      
        1 atcgccattc cgcaagggtg gcagcgcggc gaggtccggc tgtgtcagcc tcacccagcc
       61 ggcgcccagc ccagcgagcg caaccaggac cagcagcgcc agcgcaagct tacgcatcac
      121 cccacccgca tgcctgtcag caccgcgccc agcaccagca acagcaccag cagcacgata
      181 accgacacac cccagcgcag cgcgaggtaa ttccccgcca ccacgccgcg cccgcgcccg
      241 atggtctcca ccacgatggt gatgaaaaaa cccgccagct cgatgaacaa ggccagggcc
      301 ggcagacgga aatggatcat caccgaaagt gccacgaagc cgatgagcgc gggaatgaca
      361 ccaaagacga gcagatcccg ctccgccccc tgcacggcag gcggcaaggg cacgccattc
      421 accggatgcg ccgtatcacg cagcgcaaaa ccccaatgca cggcgccgag gaatgacagc
      481 accaccgcgc cataggagat cagcacctcg atcgccgtcg ccgattgcag cggatcgagc
      541 agcacgatgg cacccaggat cagaaacgga atggttccca ccagagagaa cagcaccgcc
      601 atggaaaaag gctgcttgaa catttttggt cccccctatt ctgccgccag cctgtccggt
      661 tggtcgatca catagcccag ccgctcgatc accggcttca acatgtccag cactggcccg
      721 agatgtttca aataaggccg gtagcggtag cgcgagcggt cgtagagttt ttccgtcacc
      781 tgtgcgtaag aggccgtccg cgcataacgc gtattctcct cgaaagagag gcagcgcgga
      841 tcgaattcca ccccgatgaa atcgagcacg cgccgcacat tcgcctcctg gtccagcacc
      901 acatcctcgt agcgtaccgg cagatagcgc atatccttca cattattgcg gtaatgcagg
      961 atgagatccg cgacgaggtt ataatgctgc gcgatggtct ccatctgcgc cgcgcagaaa
     1021 aacccatgcg tgagatggtt ggaatagacc gagagcagaa catccagcgg atggcggatg
     1081 acatggatga tcggcgaagc cgggaagagc agcgagatga ggccgagatg ggtctcgttg
     1141 agcggcatct tgtccgtgaa gaacgcagcg ccttccttga agattccggc cttggcggcg
     1201 cggttgaggt aataatcgcg caactcgttc aagccgtcgc gctggtcgcc catccacagc
     1261 tccgccagcg cctcgggata gctcagcgga ctcgccagca ggcgcggcat gatctgcgtg
     1321 atgtcgttga tataaggcaa ctcgtcccca gccgagatct gcggatgcac ggtgagggtc
     1381 tgctcgatca gcgtggtgcc cgaacgcggg aagccgacga tgaagaccgg ctgcggcatc
     1441 cccgccctca cctctgcgcg cggcaaagtc ttcaaccgcc gctcggtgaa aaaccctttc
     1501 agccgcgccg cctgctcgga cgccgcatcg gccatatagg tgcgcgcgcc catctcgatt
     1561 gcgcgtttct tgccaaggtc aaaacattca aacgcctcgt caaagcgccc catctggtcg
     1621 agcagccggc ccttctcgga catttccgcc ggcccaagct ttacccgccc atcctccggc
     1681 tcatgcaaaa tcgccagcgc ctgctcccgc ttcttctgcc gcgccagaac cgtcgcgcgc
     1741 gtcagctgca cagagggatt atcgggcagc agcgtttccg cctcatccag aagttctaac
     1801 gaacagtcaa atttcctatc tgcctcctcc atcttggcat aacccagcac ggtctgcagc
     1861 acgccgggct tcagcgccat ggagcgctta tacaattccc gcgcctcgtc gatacgcccc
     1921 tgattcttga gattccaggc gagattcgcg agcgtgatcg gctcctcgcc ctcggccagc
     1981 tcgagcacgc ggcggtaatg atattcaccg atcagcggac ggttggcctc cgtcagcacc
     2041 agccccatca gattatgcgc ctgcgcattc tgcggcgcga tgcgaatggc attgcgcgca
     2101 tgcagctccg cttccgcgag ctgcccccga ttgagcaaca tcaaagtcag ctcattggtg
     2161 gcccagaaat tattcgggtt caacgccacc acgcggcgga tcagcgcctc cgcggcggcg
     2221 aatttctgcg cctgccggct ggtacggtag aggaacatca aggcatcctc ccgccccggc
     2281 gccagctcca gcatatgccg cgcattattc tcggcggtgg tcaggtcgcc cgccgccagc
     2341 gccgcctcgg cctgcgccag catcggcgcc agcgcctggg tagcctcggg cggcgagagg
     2401 gtggcaaaat ccagcgcgca gcaacgcgcg cgccgcaaac cggaaccgca ggagcatggg
     2461 gtcgggtcaa ccatgccggg actctaacga gcaggcagca tcccggctag aggcaagccg
     2521 ggctaggcgg gcgccgcccc cagagcgagc tggtgcaacg ccgccggctg ggccagcagc
     2581 aaacgctgcc gccgctgcac gataacaccc gccgaaagca gataatccag cagcaaggcc
     2641 gtactgtact caccaatgcc ggccaggccc gcgagccctt ccatggacaa aggcggcgtg
     2701 atctgcacca ccagtccggc ctcgatctcg tatttctcag cgcagcccag caatgcgagg
     2761 gccagacgct ccatatcggt cgcctgcgcc accggcatcg cggcgtcggc ggtcagaggg
     2821 cgggtcaccg gggtcgcaaa ttgggtcacg gtctgcatgg caggcacctt aaataatata
     2881 aaaactataa ttatagtagt tttatagaga gtacaatctt ttattgcgcc tgataggtga
     2941 gcccgctagg agagcgccat gagccccata ccctcctgcc cgcaatgcac actggctgat
     3001 tcctacctcc agggcgccca atatgtctgc aatatctgcg gccatgaatg gcccgcggag
     3061 gaggctgaag aggtggtgcg cgacgccaat ggcaatgtgc tggtgagcgg cgacagcgtg
     3121 accctcatca aggacctcaa ggtcaaaggc tcatccacca cgctgaaagt tggaaccaag
     3181 ctcaaaaaca tccgtgtcgt gcccggcggc gaccatgcgg tggagcatgg cggctacatg
     3241 ctgaaacagg aatttttgcg caaggcctga acaaaaaagc gccccggagg gcgccttttc
     3301 gtgaatgcag ccagactacc cggcatgcgg gggaacggaa tccagcttgg cctgggccga
     3361 aatcagccgg tcggaggctt cgcgataggc atcggcatca tgcagatcca ccgcgtcata
     3421 ggccgtcttg gcttcggcga gctccgcctg g
//
LOCUS       DASQCV010000203         2225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2032011, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000203 DASQCV010000000
VERSION     DASQCV010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2032011"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            286..732
                     /locus_tag="VEQ16_03150"
     CDS             286..732
                     /locus_tag="VEQ16_03150"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYP62854.1"
                     /translation="MQMRCCFAAVILSLAASGASANVLIFVDKSSQRMTVSVDSSPRY
                     QFVVSTGRAGYGTPTGTYHPQRLERTWFSKEYYNSPMPYSIFFHGGYAIHGSYEINRL
                     GGPASHGCIRLHPQNAAALFALVKQQGLDAATIVVSGQNPIGRRRR"
     gene            1280..1414
                     /locus_tag="VEQ16_03155"
     CDS             1280..1414
                     /locus_tag="VEQ16_03155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62855.1"
                     /translation="MAGAVAAGMVAVGDMAAVAVGMVVADTSEALADMAADLAGTAAE
                     "
     gene            1651..>2225
                     /locus_tag="VEQ16_03160"
     CDS             1651..>2225
                     /locus_tag="VEQ16_03160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62856.1"
                     /translation="MGDPGRRVFGNRAIANVALQSQFPQARFRGVFSGSAWPWWRGGF
                     ALGWLGPLFWPYAYYDLFDYVYWPYAYDDFWPYAYDDVYYGIYGPYAYYAPGVNGRGV
                     SYGRYGGRSRRYAATTNGPRPRAAEVCSNRAPELTDWPIERISEVVQPTDAQRLDELR
                     AASAKAIEILQSGCPKDLPSIPTGRLSAMGSR"
BASE COUNT          376 a          668 c          750 g          431 t
ORIGIN      
        1 acggtcttgg ctgcgtcgtc gtcgccagca actggcaagg cgatgcgccc aggcgcgcct
       61 gcaggccgac ccaattcgag aaggtgtcgg gcgtaaatgt tattgaacgc tttgatcacc
      121 ggtcggccaa gctgctgagc ggtcggctct aaccattgag ctacgggccc gatccgttcg
      181 ggcgcaggcg ccggtgcgag agatagggct tgcagaaacc gaactgcccg gagagattta
      241 tgcagagcgg cttcgagcgc ttgccgtcga attcaggccg tccccatgca aatgcgctgt
      301 tgctttgccg ccgtgatctt aagtttggcc gcatccggcg cgtccgccaa cgtcctcatc
      361 ttcgtcgaca agagcagtca gcgcatgacg gtttctgtcg acagctcgcc gcgctaccag
      421 tttgtggtgt cgacgggccg agccggatac ggcacgccta ccggcactta tcatccccaa
      481 cggctggagc ggacgtggtt ttccaaggag tattacaatt ctcccatgcc atattcgatc
      541 ttctttcatg gcgggtacgc gatccatggg agctacgaaa tcaaccggct cggcgggccg
      601 gcctcgcatg gctgcatcag gcttcatccc cagaacgctg ccgccctatt cgcactggtg
      661 aagcagcagg gtctcgatgc cgcgacgatt gtggtctccg gacaaaatcc cattggccga
      721 cgacgccgct aggtagcagc atctcgtccg cgccgctcaa gctcaattcg caacgtcggt
      781 gataaatcgt attgatgccg tttgactggc atgcctccga gggaggggag cgtgacaggt
      841 cacatcggaa ggcgcgactt catcaccctt ctcggaggca gcgcggcggc gtggccgctc
      901 gccacgcggt actgacagcc gccggtccac cgccggtcct gccataatac ttgcccagtt
      961 catctgaacc cacagtgctg aacccacagt ggagaaaaca caacgatgcc agccgtggat
     1021 attccgtttg cggccttttg agagttggaa ccgcttagca agggacggag ttttgatggt
     1081 ataggccggt cgggacggcg cgaccgaagg aaaactcctc tgtcaatatt ggaagctctt
     1141 cgatcgtgga agtatgccaa ggctcagccg accgcggcgg tgcggcgcga gctccgcagc
     1201 gccgtgagaa ccggcgcttg cattgccgcg atgctgctca tcgtcgtgcc tcttctcaca
     1261 ctcgaggcag ccgcccgcgg tggcgggggc ggtggcggcg ggcatggtgg cggtggggga
     1321 catggcggcg gtggcggtgg gcatggtggt ggcggacact tcggaggctt tggcggacat
     1381 ggcggcggat ttggcgggca ccgcggcgga ataagcttcg gagcacgcgg cggcggtggg
     1441 ttcagggcag cgcatgtcgg cagggcgcat tttggcgggg cgcacgtcgg ccgggcccat
     1501 atcggcagga cgcgcagcgg cgcctcgcat attacggccc gttcggtggg aggtagccgt
     1561 tcgcagcatg ctggtgtcgc ggcatcgcgg ctcggcggcg cgggcaaccg gttcgccgcg
     1621 gcgtcggccc atgggggtgc ggcggcacgc atgggcgacc ccggtcgtag ggtgtttggc
     1681 aaccgcgcca tcgccaacgt ggcgttgcaa tcgcaattcc cgcaggcgcg atttcggggc
     1741 gtgttctctg gttcggcctg gccttggtgg cgcggcgggt tcgcactcgg ctggttagga
     1801 ccgctgttct ggccctacgc ttattacgac ctgttcgatt acgtttactg gccgtatgcc
     1861 tatgatgact tctggcccta tgcctacgat gacgtgtact acggcatcta cggcccttac
     1921 gcctattacg cccccggcgt gaatggccgc ggcgtgagct atgggcgcta tggcgggagg
     1981 tctaggcgct atgcggcgac cacaaacggc ccccgtccgc gcgccgccga agtttgcagc
     2041 aaccgggcgc cggagctaac ggactggccg attgagcgca tttccgaggt ggtgcagccg
     2101 actgatgcgc agcgtcttga tgaattaagg gccgcaagcg ccaaagccat cgagatactc
     2161 cagtccgggt gcccaaagga tctgccgagc atcccgaccg ggcggctttc ggcgatgggc
     2221 agccg
//
LOCUS       DASQCV010000204         1574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2199193, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000204 DASQCV010000000
VERSION     DASQCV010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2199193"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..1224
                     /locus_tag="VEQ16_03165"
     CDS             130..1224
                     /locus_tag="VEQ16_03165"
                     /inference="COORDINATES: protein motif:HMM:NF013752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HYP62857.1"
                     /translation="MTEGFEGVISCLGGRAHIEKSARETRAFLRARGIEDALVLLRLI
                     LAYCLGGKGLRLTAAWAASLGVADISNVALLYRLRQCGDWLSVLAGACLSAACPKAAQ
                     GRPVRIVDATAVPKAGQKAKVGNGLWRLHCAFDLPSERFSHFELTDESEGERLDRIPV
                     VKGEIRLADRAHISAERIAAVIDAAVIDAGGDIVVRAGWKNARWLGADGKPFDLIAAL
                     KKASELGKIDMPVWLGRKGAPALALRLVAVRKPPHAIAEARRKARQAAQRKGSQISDE
                     TLVAAEWVILVTSLAAEAYPAADVLALYRLRWRIELAFKRLKSLIGLKEPPGFDERSA
                     KPWILAHLLLALLIEPLADGLDDSPPALAA"
BASE COUNT          265 a          499 c          491 g          319 t
ORIGIN      
        1 cgtttgctat cagtagctta ggcggaagaa tgttccccgc aggcgcggga atgaacccat
       61 aggcgctaaa atatgcttgc cagcttgaat cgagtcagat tctagcgggg catggcttac
      121 gaatcgtttg tgactgaggg cttcgagggg gtgatcagct gccttggcgg gcgggcgcac
      181 atcgagaaga gcgctcggga gacgcgtgct tttctgcgcg cccggggtat tgaggatgcg
      241 ctcgtgcttt tgcgcctcat cctggcttat tgccttggcg gtaaagggct gaggctaacc
      301 gcggcctggg ccgcgtcgct tggcgtcgcc gacatttcca atgtggcgct tctgtaccgc
      361 ttaaggcaat gcggcgattg gctttccgtt ctggccggcg cctgcctttc cgctgcttgc
      421 cccaaggcgg cccaaggccg gcccgttcgc atcgtggatg cgacagcggt tccaaaggct
      481 ggccagaagg ccaaggtcgg caacggctta tggcggcttc attgtgcttt cgatttgccc
      541 tcggaacgct tcagccattt cgagttgacg gacgagagcg aaggcgagcg cctcgatcgc
      601 atcccggtgg tcaaagggga aatccgcctt gcagaccgcg cccatatttc cgcggagcgc
      661 atcgcggccg tcatcgatgc ggccgtcatc gatgcgggcg gcgacatcgt tgtgcgcgcc
      721 ggctggaaga acgcgcgctg gctcggcgcg gacggcaagc ccttcgatct gatcgccgcc
      781 ctcaaaaagg ccagtgagct tggaaagatc gacatgccgg tctggcttgg ccgcaagggc
      841 gcgcccgcgc ttgcgctccg cctcgttgcg gtcagaaaac ctccgcacgc catcgcggag
      901 gcgcggcgca aggcgcggca ggccgcccag cgcaaaggca gccagatttc ggacgagacc
      961 cttgtcgccg ccgaatgggt tatcctcgtc acctcgcttg cagccgaagc ttatcccgcc
     1021 gccgatgtgc ttgctcttta ccgcctgcgc tggcgcatcg aactggcctt caagcgcctt
     1081 aagagcctga tcggcttgaa agaaccgcca ggcttcgatg agcgctcagc aaagccatgg
     1141 attctggccc atcttctctt ggcccttttg atcgagccgc tcgcggacgg gctcgatgac
     1201 tctccccctg cgctggccgc ctgacgccgc ccgcccgctg gcgcctctgc gctcaactga
     1261 cgcaaacgct tcttcaagcc attcttcctc aaccaacgct gcgcgccctg ctgcgctgtc
     1321 ggcagcggct gcgacgtcat ctttgcgaac cgccaaggcg gcggcgctat caaaaaatgc
     1381 cgcccatatt ttagcgccta tgggctgtgg cgggagctgt cggtcaaaca cggacattct
     1441 gggcgcgctt atggtcgctc ttcttcgccg atcccatgcg attgccctcc tatggcgggc
     1501 gaacggtgaa tgcggatgaa accgtctatc gcatcgtcgc gacagcgcgg ctgaaggatc
     1561 agaccgaacc cgtc
//
LOCUS       DASQCV010000205         1607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1370302, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000205 DASQCV010000000
VERSION     DASQCV010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1370302"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..302)
                     /locus_tag="VEQ16_03170"
     CDS             complement(<1..302)
                     /locus_tag="VEQ16_03170"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP62858.1"
                     /translation="MADLLSYAGKRVVVSGCFSGMGEATARTLLAAGAEVHGLDYKDT
                     ALDLASFTKVDLRDPASIDAAAAKIGGKVDALFNCAGLPQTFPPLDVMKVNYMGTR"
     gene            complement(509..>1607)
                     /locus_tag="VEQ16_03175"
     CDS             complement(509..>1607)
                     /locus_tag="VEQ16_03175"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYP62859.1"
                     /translation="EPTALSQMRPGCYDVNERVKDMNINGMAASLNFASFPAFDGGLF
                     AEAPDKDVAVKHLRAYNDWHVDEWCGSHPGRFIPCGILPVWDMDATVEEIKRLTAKGC
                     HTVSMNENPTKRGLPSIHNAYWEPLWKAMTDNDMTICLHIGSGNPAPIASLETPVEAW
                     ITTMPISIAVGAADWLTLSALIRYPTLKLALSEGSIGWVPYFMERADFSHGQHYAWTH
                     SDYKGMKPSEVFKRHFLNCFIDDEFGLKNIDWIGEDNIAYECDYPHSDCLWPKAPERL
                     WETVQHLTETQINKVTHLNAMKRFNFDPFKHHKKEELTVGALRAKAKEQGVDTSERSS
                     GGAAPLAAGETPRTVTSGDIMRMMQEHAKAA"
BASE COUNT          314 a          537 c          447 g          309 t
ORIGIN      
        1 tgccgcgtgc ccatgtagtt caccttcatc acgtccagcg gcgggaaggt ctggggcagg
       61 ccggcgcagt tgaacagagc atccaccttg ccgccgattt tcgccgccgc cgcgtcaatc
      121 gaggccgggt cacgcaaatc cactttcgta aatgaggcga ggtccagcgc cgtatccttg
      181 taatccagcc catgcacttc ggcgccggcc gcgagcaggg tacgggccgt ggcctcgccc
      241 atgccggaga aacagccact cacgacgacg cgcttgcccg cgtaactcaa cagatctgcc
      301 acgttaaccc cctcgcatat gcccccggaa cggccagaca gggctcacat tgtaaagcgt
      361 gccattttga tgccgccggg gcgcgggggg atcaagccca gccttgtttc atcgtgcccg
      421 cgattggaac ctcgccctgg ggtgaacgcc caaaacaaaa cgggccaggc gtttccgcct
      481 ggcccgcatc tcccagccaa cccaaaaatc aggccgcctt ggcgtgctcc tgcatcatgc
      541 gcatgatgtc accggacgta acggtccgcg gcgtctcgcc cgcagccagc ggcgcggcgc
      601 cgccgctcga acgctcagac gtatccacgc cctgctcctt ggccttggcc cgcagcgcgc
      661 ccacggtcag ctcttccttc ttatgatgct tgaacggatc gaaattgaac cgcttcatcg
      721 cattcagatg cgtcaccttg ttgatctgcg tctcagtgag atgctgcacc gtctcccaca
      781 gccgctcagg cgctttcggc cacaaacagt cggaatgcgg ataatcgcac tcataggcga
      841 tgttgtcctc gccgatccag tcgatgttct tcaacccgaa ctcatcatcg atgaagcaat
      901 tgaggaaatg gcgcttgaac acttcgctcg gcttcatccc cttatagtcg gaatgggtcc
      961 aggcataatg ctggccatgg ctgaaatcgg ctcgctccat gaaatacggc acccagccaa
     1021 tgctgccctc ggagagcgcc agtttcagcg tcgggtagcg gatcagcgcg gacaatgtca
     1081 gccagtccgc cgcgcccacg gcgatggaaa tcggcatggt cgtgatccac gcctccaccg
     1141 gcgtctccag cgaggcgatc ggcgccgggt tgccggatcc gatatgcagg cagatcgtca
     1201 tgtcgttatc ggtcatcgcc ttccacagcg gctcccaata agcgttgtgg atggagggca
     1261 agccgcgctt ggtcggattc tcattcatcg aaaccgtatg gcagcccttt gcggtgaggc
     1321 gtttgatctc ctccaccgtg gcatccatgt cccacaccgg cagaatgccg cagggaatga
     1381 agcggccagg atgcgaaccg caccattcat caacatgcca gtcattgtaa gcgcgcagat
     1441 gcttcaccgc cacgtccttg tccggcgcct cggcaaacag cccgccatcg aaagccggga
     1501 aggaggcgaa attcagcgac gccgccatgc cgttgatgtt catgtccttc acacgctcat
     1561 tcacgtcata gcagcccggg cgcatctggc tcagcgcagt cggctcc
//
LOCUS       DASQCV010000206         1574 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_374920, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000206 DASQCV010000000
VERSION     DASQCV010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374920"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1381
                     /locus_tag="VEQ16_03180"
     CDS             <1..1381
                     /locus_tag="VEQ16_03180"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MBOAT family O-acyltransferase"
                     /protein_id="HYP62860.1"
                     /translation="YFALPFRNAVFLVFSLAFYTLGEGPHIFLLLACVAYNHRFALLI
                     EKESAARGPGSKRWISVAIAVNLGVLGLFKYGGFVMAQLAPVIHLLGVQQLPRWPLAL
                     PFGISFFTFHALSYLIDVYRRDVKAERNLLALALYITMFPQLIAGPIVRFKTIVGELH
                     GRHETMEGIAEGIRIFVIGLAQKTLIANTLALPADRIFQLPIDMVTAPVAWIGALAYS
                     LQLYFDFCGYSLMAIGLARALGLHFPRNFDYPYLSKSITEFWRRWHITLSQWFRDYVY
                     IPLGGNREGALTTYRNLVIVFFLCGLWHGAAWTFVIWGLWHGLFLVIERMGLARLLKR
                     LPSPIAHAYALLVVLIGWVMFRSPDFHHASIYLGIMAGLGHPGPTSFGASWFLTTDVV
                     LAFIAGFIGSLPTLHWITAHLARWSESARLPRLLIAGATVVLPLGLLVLCTMTLALGT
                     YNPFLYFRF"
     gene            1392..>1574
                     /locus_tag="VEQ16_03185"
     CDS             1392..>1574
                     /locus_tag="VEQ16_03185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62861.1"
                     /translation="MAVKAEVTGMLDAPRWRDSLLVALFAAFLLLPVTLQAFGIGQTT
                     ARDEMRELVERPRFPTT"
BASE COUNT          205 a          572 c          453 g          344 t
ORIGIN      
        1 ctatttcgct ctgcccttcc gcaatgcggt cttcctggtc ttcagcctgg ccttctatac
       61 cctcggcgaa ggcccgcaca tcttcctcct gctcgcctgc gtcgcctaca accaccgctt
      121 cgcgctgctg atcgagaagg aatccgccgc ccggggtccg ggcagcaagc gctggatctc
      181 cgtcgccatc gccgtcaatc tgggcgtgct gggcctgttc aaatatggtg gcttcgtcat
      241 ggcccagctg gcgccggtca ttcacctcct cggcgtgcag cagctgccgc gctggccctt
      301 ggcgctcccc ttcggcatct ccttcttcac cttccacgcg ctttcctatc tgatcgatgt
      361 ctaccggcgc gatgtgaagg cggagcgcaa cctcctggcg ctcgccctct acatcaccat
      421 gttcccgcag ctcatcgccg gacccatcgt gcgcttcaag accatcgtgg gggagctcca
      481 tggccggcac gagaccatgg aaggcatcgc cgagggcatc cgcattttcg tcatcggcct
      541 cgcccagaag accctcatcg ccaatacgct ggctttgccg gcggaccgca tcttccagct
      601 tcccatcgac atggtcacgg cgccggtcgc ctggatcggc gccctcgcct atagcctgca
      661 gctctatttc gacttctgcg gctattcgct catggccatc gggctggccc gcgcgctcgg
      721 cctgcatttc ccgcgcaatt tcgactatcc ctatctcagt aagtccatca ccgagttctg
      781 gcggcgctgg cacatcacgc tctcccagtg gtttcgcgac tatgtctaca tccccctcgg
      841 cggcaaccgg gaaggggcgc tcaccaccta tcgcaacctg gtgatcgtct tcttcctttg
      901 cggcctgtgg catggcgcgg cctggacctt cgtcatctgg gggctgtggc acgggctctt
      961 cctcgtcatc gagcgcatgg gactggcgcg gctgctgaag cgcctgccga gccctatcgc
     1021 ccatgcctat gcgctgctcg tggtgctgat cggctgggtc atgttccgct cgccggattt
     1081 ccatcacgcc tcgatctatc tgggcatcat ggccgggctc ggccatccgg gtcccacgag
     1141 cttcggcgcc agctggttcc tcaccaccga tgtggtgctg gccttcatcg ccggcttcat
     1201 cggctcgctg ccgaccctcc actggatcac cgcccatctg gcgcgctgga gcgagagtgc
     1261 gcgtctgccg cggctgctca tcgccggcgc cacggtggtg ctgccgctgg gcctcctggt
     1321 gctctgcacc atgaccctgg cgctcggcac ctataacccc ttcctctatt tccgcttcta
     1381 ggagggtcgg cgtggcggtg aaggccgagg tcacggggat gctagacgca ccgcgatggc
     1441 gggacagcct gctggtcgcg ctcttcgcgg cctttctcct gctgccggtg acgctgcagg
     1501 ccttcggcat cggccagacc acggcgcgcg acgagatgcg cgagctcgtc gagcggcctc
     1561 gctttcctac cacg
//
LOCUS       DASQCV010000207         1753 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1038804, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000207 DASQCV010000000
VERSION     DASQCV010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1753
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1038804"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..254)
                     /locus_tag="VEQ16_03190"
     CDS             complement(<1..254)
                     /locus_tag="VEQ16_03190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62862.1"
                     /translation="MATPIPTRQRPDKALLYAALVIIAGVLATTLAQTQVLARLPLQN
                     LLKNELHADRTANAAFFFWAGLAWYLKPLAGILTDAYPLFG"
     gene            403..684
                     /locus_tag="VEQ16_03195"
     CDS             403..684
                     /locus_tag="VEQ16_03195"
                     /inference="COORDINATES: protein motif:HMM:NF023165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HYP62863.1"
                     /translation="MLGWVIGKPWRGFIAFLGCMVTADVALAQDMPPTPELSAAAPTP
                     PSNMAAVPSATPSAPPAAPMLTAAQLQQLVAPIALYPDPLLAQILMAST"
     gene            695..>1753
                     /locus_tag="VEQ16_03200"
     CDS             695..>1753
                     /locus_tag="VEQ16_03200"
                     /inference="COORDINATES: protein motif:HMM:NF023165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HYP62864.1"
                     /translation="MVEAARWVSVPANRALKGDALTNALQAQNWDPSIKALVPFPQIL
                     QNMSDQLQWTQDLGNAFLAQQADVMTAVQALRQQAMAAGNLKQTPQCRCAIKTSGNTI
                     SILPAEPQVACVPVYSPAVYGAWPYPAYPPYSFPAPVGFAYEPGFWIGYAPPIELAMF
                     GPFWGWGWVDWEHHDIAVDPERYALVAGGHPGFSSNVWVHNPEHRGGVGYADAASRAR
                     FDPARVSALTAAARSGAGRGEAVHGGAGRFGAAATGAGAGPFRREAALSGGTPFRAGP
                     GFHGGPHGAGAPHFATAGPRGGGGAPHFAVTGPHSGGAPHLAMGGPHGGEAPHFAVGG
                     PHGGGAPHFAMAGPHGGGG"
BASE COUNT          283 a          570 c          603 g          297 t
ORIGIN      
        1 ccaaagagcg ggtacgcatc ggtcaggatg ccggccaaag gtttcaaata ccaggccagc
       61 cccgcccaga aaaagaatgc ggcgttggcg gttcggtccg catgcagttc gtttttgagc
      121 agattctgca gcggcagccg cgccagcacc tgtgtctgcg ccagggtcgt ggccagcacc
      181 ccggcaatga tgacgagcgc cgcatagagg agggccttgt cgggtcgctg tcgggtgggg
      241 atcggcgtgg ccatgcgcgg ttctacccga tttcccgcaa gcagccatca cggagttgac
      301 ttgagcagcc gccgcgaatg caggctgaga gggattaaag cctagcggga acaactcttg
      361 gttagagacg ttgtagtcaa ggacacgcct ccgaaggaga caatgctggg ttgggtaatc
      421 gggaagccct ggcgaggatt tatcgccttt ctcggctgca tggtcacggc ggatgttgcg
      481 ctcgcgcagg atatgccgcc gacacccgaa ctgtcggcgg cagcaccgac gccgccttcg
      541 aacatggcgg ccgtaccgtc ggcaacgcct tcagcaccgc cggcggcacc catgctgacc
      601 gcggcccagc tccaacagct cgtggcaccc atcgcgctct accccgaccc cttgctcgcg
      661 cagattctga tggcgtcgac ctaacccgct cgaagtggtc gaagccgcgc ggtgggtcag
      721 cgtcccggcc aaccgggcgc tgaagggcga tgcgctcacc aacgcgctgc aggcgcagaa
      781 ctgggacccg agcatcaagg ccttggtgcc gttcccgcag atcctgcaga acatgagcga
      841 ccagttgcaa tggacgcagg atctcggcaa cgcctttctc gcccagcagg ccgacgtcat
      901 gaccgcggtt caagccctgc gccagcaagc gatggcggca ggaaacctga agcagacgcc
      961 gcaatgtcgt tgtgcgatca agaccagtgg caatacgatt tcgatcctgc cggcagagcc
     1021 gcaggtagcc tgcgtgccgg tctacagccc cgccgtttac ggggcatggc cctatccagc
     1081 gtatccgcct tattccttcc cggctccggt cggcttcgct tatgagccgg gcttctggat
     1141 cggctatgcg ccgcccattg aactggcgat gttcggtccg ttctggggtt ggggctgggt
     1201 cgattgggag catcacgaca ttgccgtcga tcccgagcgc tatgcgctcg ttgccggcgg
     1261 ccatccgggt ttctcaagta atgtatgggt gcacaacccc gagcaccggg gcggcgtcgg
     1321 ttatgccgac gcggccagca gagcccgctt cgatcccgcg cgggtctcgg cgttgaccgc
     1381 ggcggcgcgc tctggcgccg gccggggcga ggccgtgcac ggcggagccg ggcgtttcgg
     1441 tgcggcagcg accggcgccg gagctggccc gttccggaga gaagcggcgc tgagtggcgg
     1501 cacgcctttc cgagccggtc cgggatttca cggcgggccg catggtgccg gagccccgca
     1561 tttcgccacg gccggcccgc gcggcggcgg cggtgctcct catttcgcgg tgaccggccc
     1621 gcatagcggg ggcgcgccgc acctcgcgat gggtggcccg catggcgggg aggccccaca
     1681 tttcgccgtc ggcggcccac atggtggcgg cgcgccgcat ttcgcgatgg ccggcccgca
     1741 tggtgggggt gga
//
LOCUS       DASQCV010000208         2179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3194066, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000208 DASQCV010000000
VERSION     DASQCV010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2179
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3194066"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..740)
                     /locus_tag="VEQ16_03205"
     CDS             complement(<1..740)
                     /locus_tag="VEQ16_03205"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYP62865.1"
                     /translation="MSVMTEAAGERTLHRTIDWKKTFWIASGVPPLVLFSIGGIAATV
                     GTPSYIVWTLSILMGFIQSFTYAEIAGMFPSKSGGAPIYGAAAWIHYGKIFGPLSVWS
                     YWLAWTPVLSIGTGIAAGYIITGLGSAGIAIPSGEWDIANLGFIKDGLKLRINATFFL
                     GAIMLLLCYAIQHRGILRTAWFQTVVGVVVTVPLLIVAIWPLITGHVLTSNLTPVVPL
                     GDANGAGYPFNGHWDKAGWTLFLGGMFIA"
     gene            complement(1131..1673)
                     /locus_tag="VEQ16_03210"
     CDS             complement(1131..1673)
                     /locus_tag="VEQ16_03210"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HYP62866.1"
                     /translation="MSRTSASLPEAASRGRPFLRLPWRPVPSEPVAEDFAGKSLLLAS
                     EGRAISRPAVELAARLAKQSGAEVHVLSIARVWGTSLGLPHPALMPNRRELKEQHERV
                     AAALAILKRRGVAASGQVLGTRNAAKRIVTEARRRQVDAIVMAADPPRHWLVADMFWS
                     QEPYRVRRRAAMPVYLVLGT"
     gene            complement(1645..>2179)
                     /locus_tag="VEQ16_03215"
     CDS             complement(1645..>2179)
                     /locus_tag="VEQ16_03215"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYP62867.1"
                     /translation="GIGGEVLNWVIAFMLIVALALSALNAIMGSGRALYQMALDGEFP
                     SFFSKVNEHGVPARAMFFNVIASLVVVFLGGAVQIYSFSNVGYTISFIPVLIGYFLLR
                     QDKPNLRRPFRLPEYMKYVALILAAVYFVFWLFGGLWFSKLGNVEVYYWLGWATLLAY
                     LPFYWYRVYVEDKRVAA"
BASE COUNT          436 a          668 c          755 g          320 t
ORIGIN      
        1 gcgatgaaca tgccgccgag gaagagggtc cagccggcct tgtcccaatg gccgttgaag
       61 gggtagcccg cgccattggc atcgcccagc ggcaccaccg gcgtcaggtt cgaggtcagc
      121 acatggccgg tgatgagcgg ccagatggcg acgatcagca gcggaacggt gaccaccacg
      181 cccaccaccg tctggaacca ggcggtccgc aggatgccgc gatgctggat ggcgtagcag
      241 agcagcagca tgatggcgcc caggaagaag gtcgcgttga tcctgagctt cagcccatcc
      301 ttgatgaatc ccagattggc gatgtcccac tcgccggaag gaatggcgat gccggccgag
      361 ccgaggcccg tgatgatgta tccggcggcg atgcccgtgc cgatggagag cacaggggtc
      421 caggcgagcc agtagctcca gaccgagagc ggcccgaaga tcttgccgta gtggatccag
      481 gccgcagcgc cgtaaatagg ggcgcccccg gacttgctgg ggaacatgcc ggcaatctcg
      541 gcataggtga aggactggat gaagcccatc aggatggaga gcgtccagac gatgtaggaa
      601 ggtgtgccga cggtggcggc gatgccgccg atggagaaca gcaccagcgg cggcacgccg
      661 ctggcgatcc agaaggtctt cttccagtca atggtgcggt gaagcgtcct ttcgccggcc
      721 gcttcggtca tcacgctcat gattcgcccc cttggttcaa agtgtcggcg ccggcgcctt
      781 gtggccgggg cctcaaacga aaaccgcccg gcgcgatggc acgggcggcg attgttcttg
      841 ccggtcgtcg gcgatgcggc cccagggccg gatcgtcgcg gccggatcag ttgtcgtggg
      901 aaacgcggag cccctggccg agccgacggc ctccgggagt cgtgcgaagg tcgattgcag
      961 gctaggcctc atctcccctt cctcagatga ctcggtagtg taatcacgtc attctgacgg
     1021 gggcaacgac caacatcagg ccaattcgga ccaatgctcc gcgagttgag gaaagtttac
     1081 ggcagctaca ggaaaattcg ccggcaatgg cctgacaatg gtctgatgca tcacgtgccg
     1141 aggacgagat agaccggcat ggcggcgcgc cggcgcacgc gatagggctc ctgggaccag
     1201 aacatatcgg cgaccagcca atgacgcggc gggtcggcgg ccatgacgat ggcatcgacc
     1261 tggcgccttc gggcctcggt gacgatgcgc ttggcggcat tacgggtgcc cagcacctgc
     1321 ccgctggccg cgaccccgcg gcgcttcagg atcgccagcg cggcggccac ccgctcatgc
     1381 tgctccttga gctcgcgccg gttgggcatc agcgccggat gcggcaggcc caggctcgtg
     1441 ccccagaccc gggcgatgga gagcacatgg acctcggcgc cggattgctt ggcgagacgg
     1501 gcggcgagct ccactgccgg gcgcgaaatc gcccggccct cggaggcgag aagcagggat
     1561 ttgccggcga aatcctccgc cacgggctcc gacgggaccg ggcgccaggg caggcgcaag
     1621 aagggccggc cccggcttgc cgcctcaggc agcgacgcgc ttgtcctcga catagacgcg
     1681 gtaccagtag aagggcagat aggccagcag cgtcgcccag ccgagccagt aatagacctc
     1741 gacattgccg agcttcgaga accagaggcc gccgaagagc cagaagacga aatagacggc
     1801 ggccaggatg agggcgacgt atttcatgta ttccggcagg cggaaggggc ggcggagatt
     1861 cggcttgtcc tggcgcagca ggaaatagcc gatcagaacc gggatgaagg agatggtgta
     1921 gccgacattg gagaagctgt agatctgcac ggcacctccc aggaacacaa cgaccagcga
     1981 ggcgatgacg ttgaagaaca tggcgcgcgc cgggacgcca tgctcgttga ccttggagaa
     2041 gaagcttggg aactccccgt ccagcgccat ctgatagagc gcacggcccg agcccatgat
     2101 cgcattcagg gccgagagcg ccagcgccac gatcagcatg aaggcgatga cccagttgag
     2161 gacctcgccg ccgatgccg
//
LOCUS       DASQCV010000209         2156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2033119, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000209 DASQCV010000000
VERSION     DASQCV010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2033119"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..883)
                     /locus_tag="VEQ16_03220"
     CDS             complement(98..883)
                     /locus_tag="VEQ16_03220"
                     /inference="COORDINATES: protein motif:HMM:NF005853.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP62868.1"
                     /translation="MSFSTDQFRLDGKVAIVTGAGGRGNSIGRAYALGLANAGASVVV
                     ADINGEGAQRVADEITASGGKAIAVAVDITSKDSTVAMAQRATEAFGGIDILVNNAAL
                     MAELGSASAADIPLDEWNRIFNVNLTGSMLCAQAVIPAMRARGGGRIVNQVSGGAFPA
                     VSIYGISKLALVGLTTTLARQLGRENIAVNAIAPGNVTSDAGKLLTPDDSPFIKFLEM
                     NVAMRVRGAPDELVGTLLLLCSQAGAWITGQVIHVDGGWVLRP"
     gene            complement(901..1713)
                     /locus_tag="VEQ16_03225"
     CDS             complement(901..1713)
                     /locus_tag="VEQ16_03225"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP62869.1"
                     /translation="MSNITTGFIGLGSQGGPMAQRMIDAGFPTILWARRAETLEPYKG
                     TAAKFAASIAELGAACEHVGICVVDDAGVTTTCEALLPAMKPGSRVIIHSTILPETCI
                     ALAAKFAERGIELVDAPVSGGGGGAAAGTLTVMVGGNDAAVAAARPVFESFAGLILHL
                     GPVGAGQNAKLVNNTLMAANMALADAALAAGAALNIERAALIELIKVSSGRSFAFDVR
                     ARLPDASAFTHGAPLLAKDVGLLGAVLGDDPSFVPLRDAAQPFLDKITKPKH"
     gene            complement(1720..>2156)
                     /locus_tag="VEQ16_03230"
     CDS             complement(1720..>2156)
                     /locus_tag="VEQ16_03230"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP62870.1"
                     /translation="WNKTIAVNLSAPFHLSQAAIPHLLAREGAIVNVSSTAAYVGEAY
                     AAAYCASKAGLLQMTKAMAMEYVKKPIRINAVAPGGMMTNIGNNLKMPEGVDYELIKR
                     FSGMRGLVEVDDVANMIAHLASPAGRGFHGSCVTMDAGITAG"
BASE COUNT          382 a          700 c          697 g          377 t
ORIGIN      
        1 aaaggtggcc tgccgggcga gttgggaatt gaggacgcac tgcgcctcgc tgactgacga
       61 atgaggttgg ggcctgagac cccaaccctg gaaattctta tggccgcagc acccaaccgc
      121 catcaacgtg gatgacttgc cccgtgatcc acgcacccgc ttgcgagcac agcagcagca
      181 acgtgcccac cagctcgtcc ggcgcgccgc gcacgcgcat ggcgacgttc atttcaagga
      241 acttgatgaa gggcgaatca tctggcgtaa gcagcttgcc ggcgtcgctc gtcacattgc
      301 cgggggcgat ggcgttgacg gcgatattct cgcggcccag ttggcgggcg agcgtcgttg
      361 tgagccccac gagggcgagc ttgctgattc cgtagatgga cacagcggga aacgcgccgc
      421 ccgagacctg gttgacgatg cgtccgccgc cacgcgcgcg catggcggga atcaccgctt
      481 gggcgcataa catcgagccg gtgaggttga cgttgaaaat ccggttccat tcgtcgagcg
      541 ggatatccgc cgccgaggct gagcccagct cggccatcag agccgcgtta ttgacgagaa
      601 tatcgatgcc gccaaacgcc tccgtggcac gctgcgccat cgccaccgtg gagtccttcg
      661 atgtgatgtc gacggcaaca gcgatggcct ttccgccaga ggcggtgatt tcatccgcca
      721 cgcgctgcgc gccttcgcca ttgatgtccg ctaccacgac ggacgctccg gcattagcga
      781 ggcccagcgc ataggcgcgg ccgatggaat tgccacgccc gccggcgccg gtgacgatcg
      841 ccaccttgcc gtcgagccgg aactggtcgg ttgaaaagct catggtgcct cctcggcgct
      901 ttagtgtttt ggtttggtga ttttatccag aaatggctgc gccgcgtcgc gcaagggcac
      961 gaaggacggg tcatcgccca gcaccgcgcc gagcagcccg acatctttcg ccagaagcgg
     1021 cgcgccatgg gtgaaggcgg aggcatccgg caggcgggcg cgcacatcga aggcgaagga
     1081 acggccgctg ctcaccttga tcagctcgat gagcgcggcg cgctcgatgt taagcgcggc
     1141 acccgccgca agcgccgcat cggccagcgc catattggcg gccatcagcg tgttgttgac
     1201 gagcttcgca ttctgcccgg cgccgacagg gccgagatgc aggatgagcc cggcgaaact
     1261 ctcgaatact ggccgcgcgg cggcgacggc tgcatcgttc ccgccgacca tcacggtgag
     1321 cgtgcccgcc gccgctccgc cgccgccgcc gctcaccggc gcgtcgacaa gttcaatgcc
     1381 ccgctcagcg aatttcgccg caagcgcgat gcaggtttct ggcaggatgg tggaatggat
     1441 gatgacgcgg ctgcccggtt tcatcgccgg cagcagcgcc tcgcaggttg tcgtcacgcc
     1501 ggcatcgtcg acgacgcaga tgccgacatg ctcgcacgcg gcgccaagct cggcgatgct
     1561 agcggcaaac ttcgccgccg tgcccttata gggctcgagc gtctccgcgc gccgcgccca
     1621 cagaatggtg ggaaagcccg catcgatcat gcgttgcgcc atcggcccgc cctggctgcc
     1681 gaggccgatg aagcctgtgg tgatgttgct catgcgccct cagcccgcgg tgataccggc
     1741 gtccatggtc acgcaggagc catggaagcc gcgcccggcg ggcgaggcga gatgggcaat
     1801 catgttggcc acgtcatcaa cttccacgag gccgcgcatg ccggagaagc gcttgatcaa
     1861 ctcgtaatcc acgccctcgg gcattttcag gttgttgccg atattggtca tcatgccgcc
     1921 tggcgccacg gcgttgatgc ggatgggctt cttcacatat tccatcgcca tcgctttggt
     1981 catctgcaac agcccggcct tgctggcgca ataagcggcg gcataggctt cgcccacata
     2041 ggccgcggtg gaggagacat tcacaatcgc cccctcgcgt gccagcaaat gcggaatggc
     2101 ggcctgggag agatggaacg gcgcgctcag attcaccgcg atggtcttgt tccagt
//
LOCUS       DASQCV010000210         1781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_707351, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000210 DASQCV010000000
VERSION     DASQCV010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_707351"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(336..1658)
                     /locus_tag="VEQ16_03235"
     CDS             complement(336..1658)
                     /locus_tag="VEQ16_03235"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HYP62871.1"
                     /translation="MTTLNTFCDGIQRRDFLRLGTAGLFGMGLTLPRILQAAERRQSS
                     DVSLIFLFLHGGLSTIDTWDLKPDAPAEFRGEFRPIATNVTGTQIGEHMPRMARHMDK
                     IALIRSFRHHNSDHGPADHYMLTGYFPQAGFNPGLSPNNQRPAHGAIIARKLGPRRGV
                     PPYVCLPKMHPSTGSAYLGSTVAPFVIDADPNAPDFSVPDIVPPPAIPASRLEARRDL
                     LRQLDRYQRAVETRANQHAQAVSDYQREAFNLMTSPAARRAFDIQAEPERLRQDYGRN
                     SLGQSLLMARRLVEAGVRCVTIDHSNWDTHDNNFNTLRRDLLPALDGGMATLFRDLSE
                     RGMLASTLVVVTGEFGRTPRINQNAGRDHWGPAFTVALGGGGIRGGRVIGRTDARAER
                     PTLDPHGPENLSATIFHLLGIDPAEEFYTPDGRPVPIVNHGRVIRELL"
BASE COUNT          310 a          554 c          584 g          333 t
ORIGIN      
        1 aagttggcag tattcacatc gcccatccgc ccggcgcaca accaggtcgc gcaaacgccg
       61 gggtatggaa ttcattcctt gggtttcctt ttatgggctc tttgcgcgcg tagctgcaac
      121 agtgttagca attcgcttag atccactagc ccctcagctt cacgccgttc ggccgcggac
      181 agtttcccct cctcgctttg ccgatccaac aattcctgga gccggcgatt cactgcgcga
      241 ggcagacgga atttccgtaa gtcccccggc atttccagat cgataaccac tcgagacata
      301 aatctccctt gtttgcgcgt cgggctcgta tcctgttaca gcaattcccg gatcacgcgc
      361 ccgtggttga cgatcggcac cggccggccg tccggggtgt agaactcctc ggcgggatcg
      421 attcccagca ggtggaagat ggtggccgag aggttctccg ggccgtgcgg gtcgagggtt
      481 ggtcgttcgg ctctggcgtc ggtgcggccg atgacgcggc cgccccggat gccgccgccg
      541 cccagggcca ccgtgaaggc cgggccccag tgatcgcggc cggcgttctg attgatcctg
      601 ggtgtgcggc caaactcgcc cgttaccacc accagcgtgc tggcgagcat gccgcgctcg
      661 gacaggtcgc ggaacaatgt cgccatgccg ccgtccagcg ccggcagcaa atcacgccgc
      721 agggtgttga aattgttgtc gtgcgtgtcc cagttgctgt gatcgatggt cacgcagcgg
      781 accccggcct cgaccaggcg gcgggccatt aggagcgatt ggcccagaga attgcggcca
      841 taatcctgac gcagccgctc cggctcggcc tggatgtcga aggcccgccg ggctgccggc
      901 gaggtcatca ggttgaacgc ttcgcgctga taatcgctga ccgcctgggc atgctggttg
      961 gccctggtct cgacggcccg ctgatagcga tcgagctggc gcaacagatc gcggcgggct
     1021 tcgaggcggc tggcggggat ggccggcggc ggcacgatgt ccggcaccga aaaatccggt
     1081 gcgttcggat cggcatcgat gacgaacggg gccacggtgg agccgaggta agccgagccg
     1141 gtgctggggt gcatcttggg caggcagacg tagggcggca ccccgcggcg cggccccagc
     1201 ttgcgggcga tgatggcccc atgggcaggc cgctggttgt tcggcgacaa ccccggattg
     1261 aaccccgcct gcggaaaata accggtgagc atgtaatggt cggccggccc gtgatcgcta
     1321 ttgtggtgcc ggaacgagcg gatgagggcg atcttgtcca tgtgccgggc catgcggggc
     1381 atgtgctcac cgatctgcgt gccggtgaca ttggtggcga tgggccgaaa ttctccgcga
     1441 aactccgccg gcgcatccgg cttcaaatcc cacgtatcga tggtgctgag cccgccgtgc
     1501 aggaacagga agatgagcga aacatcgctg gattgccggc gctcggcagc ctgcagaatg
     1561 cggggcagcg tgagccccat gccgaagagg ccggcggttc ccaggcgcaa gaaatcgcgg
     1621 cgctggatgc cgtcgcagaa ggtgttcagc gtcgtcatta cgatcccccc tgatttcaaa
     1681 cattcgtggg ccagacactt ctgtccggcc ggaacggaca agaatgcccg tctacaacac
     1741 tacgtccaat caattaactt aactcttagg ccctcctcct g
//
LOCUS       DASQCV010000211         2155 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1537810, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000211 DASQCV010000000
VERSION     DASQCV010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2155
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1537810"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(528..1874)
                     /locus_tag="VEQ16_03240"
     CDS             complement(528..1874)
                     /locus_tag="VEQ16_03240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007610752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
                     /protein_id="HYP62872.1"
                     /translation="MTGADCLFGGLPDQAAPPAAGRGMPRLRQPERNQPGWQIAALDD
                     LVARDHPVRAVWAFVGRLDLRDLHDAVKAREGVPGQAPPVPELMLALWLWATVDGVGS
                     TRQLNKLCQEHLAYRWLCGGVSMNYHTLADFRTAHGAVLERLLADGVAALVAEGLVAL
                     DVLAQDGMRVRAAAGAGSFRRRQRLEELAVAAKARVERLRTELAGDPAVGNRRQQAAQ
                     QRAAREREERVKAALDRMPELEAERARRAKKNKAQVAKQKEPRASTTDAAARSMKMAD
                     GGFRPAYNLQIVSVPQRQIILAVDVDTTGSDHGLVRRGLEQLAAGDIEPADYLVDGGF
                     AKNEDIEWAHQRGTRLWCPAMRNKHGTQPYAPRPEDGPGVADWRQRMASERSTVMYKQ
                     RCTAECPNADARRMGLTRLLVRGKEKVRTVLLWFALAHNMLRAFALRRAAAAAAAT"
BASE COUNT          388 a          738 c          652 g          377 t
ORIGIN      
        1 cgcatggttc agggaatcaa gcgcctgctc cacgagcaga tcgggatggg ctggcgcgag
       61 tgctacgata gtgaggaaga ggcgcgcgcg acctggctcg ctgccggcca cccgcgcgaa
      121 ggcttcaagg atttcctcag ccgcaagggt tcggcttaaa taattcacga atgaggcaca
      181 aagtgcatac agaatatcaa ttctttacac ctgcgtcatc ccggcgaagg agcgtgtgaa
      241 gaattgaaga tctgctggac tggcgcagtg cgtccttcga gacagctgct tcgcagcttc
      301 ctcaggatga gtaagtctat aatggcatta agaaaactcc tcatcctgag agcctgtgaa
      361 tgtttaatcg ggcggtcatg attggcgtgc agcagcatag ccgagggtgc tggagagcga
      421 cttggctttg caaagcggtg gcagtgacga cgccggcaat taccggagaa gtggcgattg
      481 caccggcgaa ccgatctctc attgagttga tgccttggtc tactacttca ggtggccgca
      541 gcggccgcag ccgcccgccg caaggcaaag gctcgcagca tattgtgggc cagcgcgaac
      601 cacagcagga ccgtgcgcac cttttctttg ccgcgcacca gcagccgggt gagccccatg
      661 cggcgggcgt cggcgttggg gcactcggcg gtgcagcgtt gcttatacat tacggtgctg
      721 cgctcgctcg ccatccgctg gcgccaatcc gccactcccg ggccgtcctc ggggcgcggc
      781 gcataaggct gagtgccgtg cttgttgcgc atcgccgggc accacagtcg ggtgccgcgc
      841 tgatgcgccc attcgatgtc ttcgttcttg gcaaagccgc catcgaccag gtagtcggcc
      901 ggctcgatgt cgccggcggc cagttgctcc aggccgcgcc gcaccaaccc gtgatcggag
      961 ccggtcgtat cgacatcgac ggcaaggatg atctggcgtt gcggcaccga gacgatctgc
     1021 aggttgtaag ccgggcgaaa cccaccatcg gccatcttca tcgaccgcgc tgcggcgtcg
     1081 gtggtcgagg cgcgcggctc tttttgcttg gccacctgcg ccttgttctt cttggcccgg
     1141 cgggcgcgtt cggcttccaa ctccggcatg cggtcgagcg ccgccttgac gcgctcctcg
     1201 cgttcgcgcg cggcgcgttg ctgggccgcc tgctggcgcc ggttgcccac cgccgggtcg
     1261 cccgccagtt ccgtgcgcag ccgttccacc cgggccttgg ccgctacagc caattcctcc
     1321 aaccgctggc ggcgacgaaa cgagccggca cccgccgccg cccgcacccg catcccgtct
     1381 tgggccagca catcgagcgc caccaggcct tcggccacca gggcagcaac gccgtcggcc
     1441 aacagccgct cgagcacagc gccatgcgcc gtgcgaaaat ccgccagcgt gtggtagttc
     1501 atcgacaccc cgccgcacag ccagcggtag gccagatgct cttggcacaa tttgttcagt
     1561 tgccgggtgc tgccaacccc gtccaccgtc gcccacagcc acagcgccag catcagctcc
     1621 ggcaccggcg gcgcttgccc cggcaccccc tcgcgcgcct tcaccgcatc atgcaagtcg
     1681 cgcaagtcga gcctcccgac aaaggcccag accgcccgca ccggatgatc gcgtgccacc
     1741 agatcatcaa gggctgcaat ctgccaccca ggctggtttc gctccggctg gcgcaaccgc
     1801 ggcatcccgc gacccgccgc cggcggtgcc gcctgatccg gcagtccccc aaacaaacaa
     1861 tccgcccccg tcatcccgtc cccccggacg acccgcggca caacttgtgt ccgacaccac
     1921 ccataccaca aaatccatga atgatgccga aacattcaca ggctctgagg aagctgcgaa
     1981 gcagctgtct cgaaggacgc actgcgccga tccagcagat cttcaattct ttcacacgct
     2041 ctgaagcggg aatctagggt tggaagggcc gcaacgcttg cccgggcccc ccgctttggc
     2101 gggggtgacg gtaacaggat gcagcggctc aatagctgga aatctcgatc gagtt
//
LOCUS       DASQCV010000212         2751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1537883, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000212 DASQCV010000000
VERSION     DASQCV010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1537883"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1503
                     /locus_tag="VEQ16_03245"
     CDS             <1..1503
                     /locus_tag="VEQ16_03245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011389064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HYP62873.1"
                     /translation="RDLPLIKKMIAEGYIGRKGKGGFYRKGKAGKESIDLATGDYRAS
                     KKSNALEAEQKNLRKLLSGESPAARYAWRVLGQTLSYAASLVGDAADDIVAIDAAMKL
                     GYNWRFGPFELIDKLGADWLTEKLAQDGFAVPPALAAAKGRSFYKLEGTAQKYLGVDG
                     AYHDVVRPAGVLLLEDIKRSKKPVLKNASAALWDIGDGVLCFEYTSKSNSLDAQNLGL
                     LNETIDLLPKAHKALVIYNEGQNFSAGANLGLGLFAANIAAWSEIEKLVAQGHDVYKK
                     LKYAPFPTVAAPFGMALGGGCEILLHSSAIQAHAEAYIGLVECGVGLVPAWGGCSEML
                     ARWQAAPKMPRGPMPAAAKVFEIVSTATVSKSAAEAKEYLFLKPTDGISMNRDRLLAD
                     AKARALALVDGYAPPTPPAYKLPGISGHTAMNIAASDFLKRGIATPYDMVVANELANV
                     LSGGEADIIDEVSEKDILALERAAFMKLIRNDGTAARIESMLTTGKPLRN"
     gene            1514..>2751
                     /locus_tag="VEQ16_03250"
     CDS             1514..>2751
                     /locus_tag="VEQ16_03250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYP62874.1"
                     /translation="MQVYNAPLRDMRFVLHELHAAEPLPAHRDFTEELVDSILEEASK
                     FCTEVLLPLNASGDLEGCTYENGVVHTPKGFKEAYKGFTESGWGALNADPQYGGQGAP
                     ETVAKLVEEMICSTNLSFGLYPGLSHGAYVALESHGSEELKNQYLPKLVSGEWSGTMC
                     LTEPHCGTDLGMLRTKAVPQEAGSYSISGAKIFISAGEHDLSENIIHLVLARLPDAPS
                     GVKGISLFLVPKFLPDADNKPGARNGVSCAAIEHKMGLKASATCQLNFDDAKGWIVGA
                     PHKGMQAMFVMMNSERLSVGTQGLGLGEVSYQSAVAYARERLQGRSLSGVKFPDKPAD
                     PLIVHPDIRRNLLTMRAYNEGCRALCVWVAQAMDRAHHGTTEEEREVADEFVALLTPV
                     VKALFTDLGFDSANLAMQTYG"
BASE COUNT          548 a          866 c          859 g          478 t
ORIGIN      
        1 cgagacctgc cgcttatcaa gaagatgatc gcggagggct atatcggccg caagggcaaa
       61 ggcggcttct accgcaaggg caaggcgggc aaggaatcga tcgacctagc gaccggcgat
      121 taccgcgcct cgaagaaatc gaatgcgctc gaggcggagc agaaaaacct gcgcaagctg
      181 ctgagcggcg aaagcccggc cgcgcgctat gcctggcgcg tgctgggcca aacgctctct
      241 tacgccgcca gcctcgtcgg cgatgcggcg gatgatatcg tcgccatcga tgcggcgatg
      301 aagctcggct ataattggcg cttcggcccg ttcgagctga tcgacaaact cggcgccgac
      361 tggctgacgg agaagctggc gcaggacggc tttgccgtgc cgcccgcgct cgccgccgcc
      421 aagggcagga gcttctacaa gcttgaaggt acggcgcaga aatatctcgg cgttgacggc
      481 gcctatcacg atgtcgtccg ccccgccggc gtgctgctgc ttgaagacat caagcggagc
      541 aagaaaccgg tgctgaagaa tgcatccgcc gcattgtggg atatcggcga tggcgtgctc
      601 tgcttcgagt acacttccaa gagcaattcg ctggacgcgc agaatctcgg gctgctcaac
      661 gaaaccatcg acctcctgcc gaaggcgcac aaggcgctgg tcatctataa tgaaggccag
      721 aatttctccg ccggcgccaa tctcggcctt ggcctcttcg ccgccaatat cgcggcctgg
      781 agcgagatcg agaaactcgt ggcgcagggc catgatgtct acaagaaact gaaatacgcc
      841 cccttcccca ccgtggccgc gcccttcggc atggcgctcg gcggcgggtg cgagattctg
      901 ctgcacagct ccgccatcca ggcccatgcc gaggcctata tcgggctcgt ggaatgcggc
      961 gtcggcctcg tgccggcctg gggcggctgc tcggaaatgc tggcgcgctg gcaggcggcg
     1021 ccgaaaatgc cgcgcgggcc gatgccggcg gcagcgaaag tgttcgagat cgtcagcacc
     1081 gcgacggttt cgaaatccgc tgccgaagcg aaggaatatc tcttcctcaa acccacggac
     1141 ggcatctcca tgaaccgcga ccggctgctg gccgatgcca aggcccgcgc gctggcgctg
     1201 gtggacggct acgccccgcc aaccccgccg gcctacaagt tgcccggcat ctcgggccat
     1261 accgccatga atatcgccgc ttccgatttc ctcaagaggg gcatcgccac gccgtacgac
     1321 atggtagtgg ccaatgaact ggccaatgtg ctgtcgggtg gcgaggccga tattatcgac
     1381 gaggtgagcg aaaaggatat tctggccctt gagcgcgccg ccttcatgaa actcatccgc
     1441 aatgacggca ccgcggcccg catcgaatcg atgctgacca ccggcaagcc tctgcgcaac
     1501 tgaggagaac gacatgcaag tctataacgc tcccctgcgc gacatgcgct tcgtgctgca
     1561 tgagctgcac gccgccgagc ctttgcccgc gcaccgggat tttactgaag agctggtcga
     1621 ttccatcctc gaggaagcga gcaaattctg cacagaggtg ctgctgccgt tgaatgccag
     1681 cggcgatctt gaaggctgca cctacgaaaa tggcgtggtg cataccccga aaggcttcaa
     1741 ggaggcctac aagggcttca ccgaatccgg ctggggcgcg ttgaacgccg acccgcaata
     1801 tggcgggcag ggcgcgccgg aaacagtggc gaagctggtg gaggagatga tctgctcgac
     1861 caacctctcc ttcggcctct atcccggcct ctcgcacggc gcctatgtgg cgctggagag
     1921 ccatggctcg gaagagctga aaaaccagta tctgccgaaa ctggtctcgg gcgaatggtc
     1981 cggcaccatg tgcctcaccg agccgcattg cggcaccgat ctgggcatgc tgcgcacgaa
     2041 agctgtgccg caggaggctg gcagctacag catctccgga gcaaagattt ttatcagcgc
     2101 cggcgagcat gatctgtccg aaaacatcat ccacctggta ctggcacgcc tgcccgacgc
     2161 gccgtccggc gtgaaaggca tctcgctctt cctggtgccg aaattcctgc ccgatgcgga
     2221 caacaaaccc ggcgcgcgca atggtgtgtc ctgcgccgcc atcgagcata agatgggttt
     2281 gaaagcttcg gccacctgcc agctgaattt cgatgacgca aaaggctgga tcgtcggtgc
     2341 gccgcacaag ggcatgcagg ccatgttcgt gatgatgaac agcgagcgcc tctccgtggg
     2401 cacgcagggg ctcggcctcg gcgaggtgtc ctaccagagc gccgtcgcct atgcgcgcga
     2461 gcgcctgcag ggccgttcac tgtccggggt aaaattcccg gacaagccgg cggacccgct
     2521 gatcgtgcat ccggatatcc gccgcaacct gctcaccatg cgcgcctata acgaaggctg
     2581 ccgcgctctc tgcgtgtggg tggcgcaggc catggaccgt gcgcatcacg gcacgacgga
     2641 agaggagcgg gaggttgctg atgaattcgt cgctttgctc accccggtgg tgaaagcgct
     2701 cttcaccgat ctcggtttcg acagcgccaa tctcgccatg cagacctatg g
//
LOCUS       DASQCV010000213         2545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_45864, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000213 DASQCV010000000
VERSION     DASQCV010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45864"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(67..1242)
                     /locus_tag="VEQ16_03255"
     CDS             complement(67..1242)
                     /locus_tag="VEQ16_03255"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014189007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006083 - acetate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate/propionate family kinase"
                     /protein_id="HYP62875.1"
                     /translation="MTLNAGSSSIKFALFTPDHGEPVALATGLVEMHGEARHLRVRGP
                     DGEVTHEENWARAAEGFHEEALRRVLAWRRATFPNADVIAAGHRVVHGGPRYSEPVLA
                     TDEVLDYLSTLNPLAPLHEPHNIAGILAARAAWPHVQQVACFDTAFHRSHPFVNDTFG
                     LPRSLYEEGVRRYGFHGLSYEYICGRLREIAPRHAAGRVVVAHLGNGASMCAIRDGRS
                     VASSMGFTALDGLPMGTRCGQLDPGVVLYLLQQKDMAPAQITDLLYNESGLKGLSGIS
                     GDMRMLLAADTPPAREAIDYFVFRIRRECGGLAAALQGLDAIVFCGGIGENAWQVRAR
                     VLEGLEWIGVQIDETANRANAQVISRPSSDVTVFVIPTNEEAMIAKHTLAVVGAGPK"
     gene            complement(1332..>2545)
                     /locus_tag="VEQ16_03260"
     CDS             complement(1332..>2545)
                     /locus_tag="VEQ16_03260"
                     /inference="COORDINATES: protein motif:HMM:NF013100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HYP62876.1"
                     /translation="GAYGVDAAARLYFGVPATQLTLAQAAILAGLPKAPSSLNPLADP
                     QAAATRATEVLDAMVATQAITPDEENAAEAQLANAAQPISRTSWFALWVMQQKGADMP
                     EGEDITLSTTMNAPLQQTAQTALDNAIATQGPSDGVSQGAIVVLDARSGAVRALIGGV
                     GEREGYNRATLARRQTGSAIKPIVWLAGLRAGMSPDSIVYDGPLYLHGYHPHDYEANY
                     RGNVSMTEALADSMNTAAIRILLRAGGAKRVIAVAQLLGLNDHFPDDATMALGTGAVG
                     VLQMAGAYATFFNGGERVTPYGVAAINGTPAGVAAPVPVVAPGQAQAVADMMRAVVTG
                     GTGKAAFIPDIYTAGKTGTTQDFRDAWFIGYAKGDIIAVWLGNDDNSPTNKMLGGSLP
                     AAIFKSIAAAL"
BASE COUNT          442 a          791 c          892 g          420 t
ORIGIN      
        1 ctttttgaaa cttactgctc agcgcgcgcg aaccggtggc gcttgcttcg cagaccaaaa
       61 cctttgctac tttggacctg cgcctacgac cgcaagcgtg tgcttggcga tcatggcttc
      121 ctcgttggtc gggatgacga acacggtgac gtccgaggaa gggcgggaga tgacctgggc
      181 gttggcgcgg ttggccgttt cgtcgatctg tacgccgatc cattctagcc cttcgagcac
      241 gcgcgcgcgc acctgccacg cattctcgcc aatgccgccg cagaacacga tggcatccag
      301 cccctgcagc gccgcggcca ggccgccaca ttcgcggcga atgcggaata cgaaataatc
      361 aatcgcctcg cgggcgggtg gtgtgtccgc agccagcaac atacgcatgt cgccggagat
      421 gccggacagg cctttcaatc cggattcgtt atagagcaga tcggtgatct gcgccggcgc
      481 catgtccttc tgctgcagca gatagagcac cacgccggga tcgagttggc cgcagcgcgt
      541 gcccatgggc aacccgtcca aagccgtgaa gcccatggag ctggccacgg aacgcccgtc
      601 gcgtatggcg cacatggaag cgccattgcc gagatgcgcc accaccaccc gcccggcggc
      661 atggcgcggg gcgatctcgc gcaagcggcc gcaaatatac tcgtaggaga ggccatggaa
      721 accgtagcgc cgcacgcctt cctcatagag cgagcgcggc aagccgaacg tatcgttgac
      781 gaaaggatgg gagcggtgga aggcggtgtc gaaacaggca acctgctgca catgcggcca
      841 agcggcgcgg gcggcgagaa taccggcgat attatgcggc tcgtgcaggg gggcgagcgg
      901 gttcagcgtg gacagataat ccagcacctc gtccgtcgcc agtacgggct cgctatagcg
      961 cggcccgcca tgcaccacac ggtgcccggc cgcgataaca tcggcattgg ggaaagtggc
     1021 acggcgccag gcgagcacgc ggcgcagcgc ctcctcgtga aacccttctg cggcacgtgc
     1081 ccagttttcc tcatgggtca cctcgccatc ggggccgcgc acgcgtaagt gccgcgcctc
     1141 gccatgcatt tccactaggc ccgtggccag cgccaccggc tcgccatggt ccggtgtgaa
     1201 gagggcgaat ttgatcgagg aggagcctgc attcagcgtc atcacatgag ccatggccga
     1261 ccacctttcc agcttatccc ggcgacagca tggcacagcc ggtgcggcct gggaaatgcg
     1321 tcacgtcaaa tttacaaggc ggcggcgatg ctcttgaaga tcgcggcggg caggctgccg
     1381 ccgagcatct tgttggtggg ggaattatcg tcattgccaa gccagacggc gatgatgtca
     1441 cccttggcat aaccgatgaa ccaggcatcg cggaaatcct gggtcgtacc cgttttgccg
     1501 gcggtgtaga tgtccgggat gaaggccgcc ttgccggtgc cgcccgtcac cacggcgcgc
     1561 atcatgtccg ccaccgcctg ggcctggccg ggggcgacca ccggcacagg ggcagcaaca
     1621 ccggcggggg tgccgttgat ggcggcgacg ccgtaagggg tgacgcgctc gccgccattg
     1681 aagaaggtgg cgtaggcgcc ggccatctgc agcaccccaa ccgcgccagt gccgagcgcc
     1741 atggtggcgt cgtcggggaa atgatcattg aggccaagga gttgcgccac ggcgatgacg
     1801 cgcttggcgc ccccagcacg gagcagaatg cggatggcgg cggtgttcat ggaatccgcc
     1861 agcgcctcgg tcatgctgac gttgccgcgg taattggctt cgtaatcatg cgggtgatag
     1921 ccgtgcagat aaagcgggcc gtcatagacg atgctgtccg ggctcatgcc ggcgcgtaag
     1981 cccgcgagcc agacgatggg cttgatggcc gagccagtct ggcggcgggc gagcgtggcg
     2041 cggttatagc cctcgcgctc acccaccccg ccaatgaggg cgcgcacggc acctgagcgg
     2101 gcgtccagca caacgatggc gccctgggag acgccatcgg aagggccctg ggtggcgatg
     2161 gcgttgtcca gcgccgtctg cgccgtctgc tgcagggggg cgttcatggt ggtggagagg
     2221 gtgatgtcct cgccttccgg catgtccgcg cccttttgct gcatcaccca gagggcgaac
     2281 caggaggtgc gggagatggg ctgcgcggcg ttggcgagct gggcttcggc ggcattctcc
     2341 tcgtccggcg tgatggcctg ggtggcgacc atggcatcca gcacctccgt ggcgcgggtg
     2401 gcggctgcct gagggtcggc gagcgggttg aggcttgagg gggctttcgg caggccggcg
     2461 aggatggcgg cctgggccag ggtgagctgg gtggcgggca cgccgaaata gaggcgggcg
     2521 gcggcgtcca ccccataggc gccct
//
LOCUS       DASQCV010000214         2786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1207673, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000214 DASQCV010000000
VERSION     DASQCV010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1207673"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..438
                     /locus_tag="VEQ16_03265"
     CDS             <1..438
                     /locus_tag="VEQ16_03265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HYP62877.1"
                     /translation="NFAGFVDETPARDQMKSGLIALSMAYNGDIASCYADGSCTKLKF
                     FLPKEGAEIWVDTMAIPTHAPHPDLAHQFINFILDAQNGATLSNFNQYASPNAASQKL
                     LTGIMSSELINPTPEQMKRLVFLAPLRGAQYKLFNQIWTSVLQ"
     gene            520..1869
                     /locus_tag="VEQ16_03270"
     CDS             520..1869
                     /locus_tag="VEQ16_03270"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase family protein"
                     /protein_id="HYP62878.1"
                     /translation="MSNQIDLKEWFDEHRITEVECLVPDITGIPRGKIMPAQKFFQGG
                     APRLPEAIFIQSVTGEYPDDPEDKLTDPAIIDIKLIPDASTVRLVPWAHEPTAQIIHD
                     CQYANGTPVPMAPRQVLQRVLKLYQEKGWKPVLAPELEFYLVGRNTDPDYPLAPPVGR
                     SGRQETGRQSYSIDAVNEFDPLFEEMYDFCDLQEMDLDTLIHEEGAAQVEINFLHGDP
                     LSLADQVFLFKRTVREVALRHNIYATFMSKPMGGEPGSAMHVHQSIVDPETGKNLFAG
                     ADGKASKLFRRYIGGLQKYIPAVMPIFAPNVNSYRRLARFSNAPINLQWGYDNRTCGL
                     RVPFGGAEAMRVENRVPGADANPYLAFAATLACGYLGMVEKLEPTPEQVGSAYTGEYT
                     LPRELSHALDLMYDNQPIRDILGEKLVDVLVAVKRLEYETYLRVISSWEREHLLLNV"
     gene            2275..2361
                     /gene="kdpF"
                     /locus_tag="VEQ16_03275"
     CDS             2275..2361
                     /gene="kdpF"
                     /locus_tag="VEQ16_03275"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR02115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HYP62879.1"
                     /translation="MFDLIAGGAISALLLVYLVWAMLRPEDF"
     gene            2381..>2786
                     /locus_tag="VEQ16_03280"
     CDS             2381..>2786
                     /locus_tag="VEQ16_03280"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011930762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HYP62880.1"
                     /translation="MTTQGLLYIALVFLLVLGAAFPLGRYMAAIFEGRVSWLRPVETG
                     FYRLAGIDETRQMPWQSYAIALLLLSVIHFALLYAILRLQYYLPWNPLHITGMSPRLA
                     FNTAASFTTNTNWQAYVPEQQISNGAQMLGLAV"
BASE COUNT          540 a          944 c          741 g          561 t
ORIGIN      
        1 aacttcgccg gcttcgtcga tgaaaccccg gcgcgcgacc agatgaagag cggcctcatc
       61 gccctctcca tggcctataa tggcgacatc gccagctgct atgccgatgg ttcctgcacc
      121 aagctgaaat tcttcctgcc caaggaaggt gctgaaatct gggtggacac catggccatc
      181 cctacccatg cgccgcaccc tgatctcgcg caccagttca tcaacttcat cctggatgcc
      241 cagaacggcg ccaccctctc caacttcaac caatatgcca gccccaacgc cgcctcgcag
      301 aagctgctca ccggcatcat gagctccgag ctcatcaacc ccacgccgga gcagatgaag
      361 cgtctcgtct tcctcgcgcc gctgcgtggc gcgcagtaca agctctttaa ccagatctgg
      421 accagcgtgc tgcaataagc gcgcgccagt aaacccgggc cgcgcggcgt cgcatcgggc
      481 ggcgccgcgc ctcccccgag gatcgcaact gaggatgaca tgagtaacca aatcgattta
      541 aaagaatggt tcgacgaaca tagaattacc gaagtcgaat gtctggtgcc cgacatcacc
      601 ggcattcccc gcggcaagat catgccggcg cagaaattct tccagggcgg cgcgccgcgt
      661 ctgccggaag ccatcttcat ccagtccgtt accggcgaat atccggacga tccggaagac
      721 aagctcaccg atcccgcgat catcgacatc aagctgatcc ccgacgcctc cactgtccgc
      781 ctcgtgccct gggcgcatga gccgaccgcg cagatcatcc atgattgcca atacgcgaac
      841 ggcacgccgg tgccgatggc gcctcggcaa gtgctgcagc gcgtgctcaa gctgtatcag
      901 gagaaaggct ggaagcccgt cctcgcaccc gagctggaat tctacctcgt cggccgcaac
      961 accgacccgg actacccgct cgccccgccc gtcggccgct ccggccgcca ggaaaccggc
     1021 cgccagagct attccatcga cgcggtcaat gagttcgacc cgctcttcga ggaaatgtac
     1081 gatttctgcg atttgcagga gatggacctg gacacgctca tccacgagga aggcgcggcg
     1141 caggtggaaa tcaatttcct gcacggcgac ccgctctccc tcgccgacca ggtcttcctg
     1201 ttcaaacgca cggtgcgcga ggtggcgctg cgccataata tctacgccac cttcatgtcc
     1261 aagccgatgg gcggcgagcc cggctcggcc atgcatgtgc atcagagcat tgttgacccc
     1321 gagaccggca agaacctctt cgccggggcg gatggcaagg cctcgaaact gttccgccgc
     1381 tatattggcg ggttgcagaa atacatcccc gccgtgatgc ccatcttcgc gcccaacgtg
     1441 aatagctacc gccgcctcgc gcgcttctcc aacgccccca tcaatctgca atggggctac
     1501 gacaaccgca cttgcggcct gcgcgtgccc ttcggcgggg cggaagccat gcgcgtggaa
     1561 aaccgcgtgc ccggcgccga tgccaacccc tacctcgcct tcgccgccac cctcgcctgc
     1621 ggctatctcg gcatggtgga aaaactcgag cccacgccgg agcaggtcgg cagcgcctac
     1681 acgggcgaat ataccctccc gcgcgaactc tcccacgcgc tggacctgat gtatgacaac
     1741 cagcccatcc gcgacatcct cggcgagaag ctcgtcgacg tcctcgtcgc cgtgaaacgg
     1801 ctggaatatg aaacctatct gcgcgtgatc tcctcctggg agcgcgagca ccttcttcta
     1861 aacgtctgat ataaagcgga ttttataccc ccggtcatac tgtggccgga agtgggcgtt
     1921 aagctagagc attcagcttt acgctgaatg ctctagcggc ggaaggctcc taaattcccg
     1981 gcttaaaaga agcctctctt gcgtgcggaa caggcatgcg agggaggttt atttttatgt
     2041 cggattgatc gaaatcaagg aacaccgcct tccagcgcag acaaaagggt ggggttctcc
     2101 cgtctttatg ccatctttat gccggccccc atgtttccgc atcgcgcttt tatgcgcgcc
     2161 ggcgcacacc gcacgctgaa aggaacctcc catgggtgat ctcatttcca ttctggcggg
     2221 cgcggccatc ttcgccctgc tcattcttta cgttccggcc tgtgagtgcg tgtgatgttc
     2281 gacctcatcg ccgggggcgc catttccgct ctgcttctcg tttacctcgt ctgggccatg
     2341 ctgcgccctg aggatttcta atccccaagg attcttattt atgacaacgc aaggtctgct
     2401 ttacatcgcc ttggtctttt tattggtcct gggcgctgcc tttccgctcg gccgctatat
     2461 ggcggccatt tttgaaggcc gtgtctcctg gctccgcccg gtcgagaccg gtttttaccg
     2521 tctcgccggc attgacgaga cgcgccagat gccatggcag tcctacgcca tcgcgctgct
     2581 gctgctcagc gtcatccatt tcgcgctgct ctatgccatt ctgcgcctgc aatattacct
     2641 gccctggaat ccgctgcata ttacaggcat gtcgccgcgc ctggcattca acacggcggc
     2701 cagcttcacc accaacacca attggcaggc ctatgtgccg gaacagcaga tttccaacgg
     2761 cgcgcagatg ctgggcctcg ccgtgc
//
LOCUS       DASQCV010000215         2102 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1207850, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000215 DASQCV010000000
VERSION     DASQCV010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1207850"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1129
                     /locus_tag="VEQ16_03285"
     CDS             <1..1129
                     /locus_tag="VEQ16_03285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxyltransferase domain-containing protein"
                     /protein_id="HYP62881.1"
                     /translation="RVQALRDALDAQKIHGVIDLTPGIRSLQIHFDSTRISRKEVFAA
                     LEATLPTLPALEDMVIKARTLYLPLSWNDPQIQLAMRKYQETTRPNAPWCPDNIEFIR
                     RINGLGSIEDVKRIVFDAAYVVLGLGDVYLGAPVATPYDPRHRLVTTKYNPARPWTPQ
                     NAVGIGGAYICIYGMEGPGGYQLFGRTIQVWNTHRETPPFAPNHPWLLRHFDQIRFFE
                     VSTEELEDAREKFLHGKYEIRIEEQNFSLAEYKAFCAANVESIAAFQATQRAAFAAER
                     ADWAAKGLNTFEEIEAAPPPEETPLAPGERAIAAPVPGSIWQILAEPGSKIAAGDPIM
                     IIESMKMEVQVRSPASGILHSLAGAKGQLVRAGQRLGVIAP"
     gene            1126..>2102
                     /locus_tag="VEQ16_03290"
     CDS             1126..>2102
                     /locus_tag="VEQ16_03290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HYP62882.1"
                     /translation="MIPVLLEIAPIHAAYRAGALTPVRLVTTLLERIETYPDKAVFIS
                     RPSNADILAQAAALQPEDLDRLPLFGIPFVAKDNIDVAGLPTTAACPDFAFYPEKDAS
                     VIARLRAAGAILLGKTNLDQFATGLNGTRSPHGAPRSVFNADYISGGSSSGSAVAVAA
                     GLAVFSLGSDTAGSGRVPAGINNLIGLKPSIGRIPATGVLPACQSLDCVSVFAICAAD
                     ALTVLHAAEGFCAADPYSRPPQNRTLPAKPRAGILAPAEREFFGDEEAAKLYDAALAE
                     AKSQGWELVEIKYASFREIAAMLYGSAFAAERLTGIKEFFARAPDSFDPS"
BASE COUNT          391 a          763 c          573 g          375 t
ORIGIN      
        1 gcgcgtgcag gctttgcgcg atgcgctgga cgcacaaaaa atccacggcg tgatcgacct
       61 cacgcccggc atccgctcat tgcagattca tttcgactcc acccgcatct cacgcaaaga
      121 ggttttcgcc gcactggaag ccaccctgcc gacattgccg gcgctggaag acatggtgat
      181 aaaagcccgc acgctttatc tgccgctctc ctggaacgac ccgcaaatcc agctcgccat
      241 gcgcaaatac caggagacca cgcgccccaa cgcgccctgg tgcccggaca atatcgagtt
      301 catccgccgc atcaacgggc tcggctccat cgaggacgtg aaacgcatcg tcttcgatgc
      361 cgcctatgtt gttctcggct tgggcgatgt ctatcttggc gcgccggtcg ccaccccgta
      421 cgatccgcgc caccgccttg tcaccaccaa atataacccg gcccggccct ggacgccgca
      481 aaacgcggtg ggcattggcg gcgcctatat ttgcatctac ggcatggagg gccctggcgg
      541 ctaccagctc ttcggccgta ccattcaggt ctggaacacg catcgcgaaa caccgccttt
      601 cgcgccaaac cacccctggc tgctgcgcca tttcgaccag attcgcttct tcgaggtcag
      661 cacggaagaa ttggaagacg cgcgtgaaaa attcctgcac ggcaaatatg aaatccgcat
      721 cgaggagcag aatttctcgc tcgccgagta caaggcgttt tgcgccgcca acgtggagtc
      781 catcgccgcc ttccaggcca cgcagcgcgc cgccttcgcc gctgagcgcg ccgactgggc
      841 ggcaaaaggc ctcaacacat tcgaggaaat cgaggccgca ccgccgcccg aagaaacacc
      901 gctcgccccc ggcgagcgcg ccatcgcagc acccgtgcct ggcagcatct ggcaaattct
      961 cgccgagccg ggatcaaaaa tcgccgccgg agaccccatc atgatcattg aatccatgaa
     1021 gatggaggtg caggttcgca gtcccgcctc cggcattttg cactcactcg ccggtgccaa
     1081 gggacagctc gtccgcgccg gccaacgcct cggagttatc gccccgtgat ccccgtcctg
     1141 ctggaaatcg cccccatcca cgccgcctac cgcgccggcg cgctcacccc cgtgcggctc
     1201 gtcacaaccc tgcttgagcg gatcgagacc tatcccgaca aagccgtctt catctcgcgg
     1261 cccagtaacg cggacatcct tgcccaggcc gccgcgctgc agccggaaga tctggacagg
     1321 ctgccgctct tcggcattcc cttcgtggcg aaggataata tcgacgtggc cggcttgccc
     1381 accaccgccg cctgcccgga ttttgctttt tatcccgaaa aagatgccag cgtcatcgcc
     1441 cggctgcggg cggcaggggc cattctgctc ggcaagacga atctagacca gttcgcgacc
     1501 ggactgaatg gcacgcgctc gcctcatggc gcgccgcgct cagtgttcaa tgcggattac
     1561 atatccggcg gctcctcctc cggctccgcg gtcgcggtcg ccgccgggct cgccgtgttt
     1621 tcgctcggct cggacactgc gggctccgga cgcgtgcccg ccggcatcaa caatctcatc
     1681 ggcctcaagc cctccatcgg ccgcattccc gccacgggcg tgctgccagc ctgccaaagc
     1741 ctcgattgcg tcagcgtttt tgccatttgc gcggcggatg cactcaccgt cctgcacgcc
     1801 gccgaagggt tttgcgccgc cgatccctat tcccgcccac cgcaaaaccg cactttgccc
     1861 gccaagccgc gcgccggcat tttggccccc gccgaacgcg aattcttcgg cgatgaagag
     1921 gccgcgaaac tttacgacgc cgcccttgcc gaagcgaaaa gccaaggctg ggagctggtg
     1981 gaaatcaaat acgcctcatt ccgcgagatc gccgccatgc tctatggcag cgcctttgcc
     2041 gcggagcgcc tcaccggcat taaagagttt ttcgcacgcg cgccggactc cttcgaccca
     2101 tc
//
LOCUS       DASQCV010000216         1877 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2368629, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000216 DASQCV010000000
VERSION     DASQCV010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2368629"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            262..>1877
                     /locus_tag="VEQ16_03295"
     CDS             262..>1877
                     /locus_tag="VEQ16_03295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62883.1"
                     /translation="MVAGPRMPPELQIGIGWGALCLLLTLWGVLVPLSLAMPAAGFVL
                     IALCVLALPDRRPGPITWKTLGRVLPVTLIFWIVMAPIQPSQPDTWLNLLPNAFYLVD
                     WGSLPTATLPPSGSYLPAAPYNTQFLSYLGSLAWPDYPAAGMSLVNVLMLLTVGLLVA
                     RALAAPPLTTDAVLPWGTIAGGMLLVTLLNPGFVPRFHLSAYGETALATTACMSAWLL
                     VGAQSEIAAGRRLSGAAPGIGLILAAMVNAKQSGIGLVAASIGAAILMSWAEGGRQRP
                     HMLRLAGLSVIPALGLYVLWRYHVSVAGVDELKPLPLAEWNWGKVPETLASAGQVVAE
                     KAVYFGCAAAALAAWPVLLWRQGWTHTTRLLAYHAFLLALYNGFLLLTYIGLFSSKMS
                     IEAHSFFRYNTHLSLVLALALALAAREFGVGRWLVGGRLRLVAGLALAAAVLAPLGYA
                     YRLRFDLDMPQPLVRSLAANLKSYLADGDRLALLLPGDNDSVATMIAGVLAYTPPRRR
                     GLDLLRRNTADQATLDEAARLGYRLALISCV"
BASE COUNT          264 a          611 c          603 g          399 t
ORIGIN      
        1 ctcggatccc agccggtgcg cgccgcgcgg gcgcgaggtt cacgtgctga ccagccctag
       61 cctggacgat cttccggtct gccgggtatt tatggcggcg attcaggcgg ctgagggtat
      121 tacccaaatg cgacttcgga gccagggttc ggccagcagc agtattcgcg tttgatagcc
      181 aattaccttc ctcatccagc agatctggtt ggcttagcgg taacctggtt ggtggctgtc
      241 agcctgatgt tggcagggac gatggtcgcc ggcccgcgca tgccgccgga gctgcagatc
      301 ggcatcggat ggggtgcgct gtgccttctg ctcacactgt ggggcgtgct ggtcccgctc
      361 agcctggcga tgccggcggc aggctttgtc cttattgcgc tttgcgtact ggctctgccg
      421 gatcgccggc ccggcccgat aacgtggaag acccttgggc gggtgctgcc cgtgacgctg
      481 attttctgga tcgtcatggc accgatacaa ccgtcccagc cggatacctg gctcaatctg
      541 ttgccaaacg cgttttatct cgtcgactgg ggtagcctgc cgaccgcgac cctgccgccc
      601 agcggctcct atctgccggc agcaccctac aacactcagt tccttagcta tctcggcagc
      661 ttggcgtggc cggattatcc ggcggcggga atgtcgctgg tcaatgtcct gatgctgctc
      721 acggtcggac ttctcgtcgc gcgggcgctc gctgcgccac ccctcaccac cgacgcggtc
      781 ctcccttggg gcactatcgc cggcggcatg cttctcgtaa ccctgctaaa tccaggcttc
      841 gtgccgcgtt ttcacctctc ggcctacggt gagacggcgc tcgcaaccac agcatgcatg
      901 agcgcttggc tactagtggg ggcgcaaagc gaaatcgccg ccggccgccg gctctcgggc
      961 gccgcgcctg gcatcggtct gatccttgcc gctatggtca atgcgaagca atccggcatc
     1021 gggctggtcg cggccagcat cggtgccgcc attctgatga gctgggcaga gggcggccgg
     1081 caacgccccc atatgctgcg gctggcaggg ttatcggtaa ttccggcgct cgggctctac
     1141 gtcctctggc gttatcacgt ctcggttgcc ggtgtcgacg aattgaaacc cctacctctt
     1201 gcggaatgga actgggggaa ggttccggag accctggcga gcgccggtca ggtagtggcg
     1261 gaaaaggccg tgtatttcgg ctgcgccgcg gcggccttgg cggcctggcc ggtactgtta
     1321 tggcggcaag gttggacgca tacgacgcgg ctcttggcct accacgcgtt cttgctggcg
     1381 ctctacaacg ggttcctgct gctgacctat atcggtctgt tttccagcaa gatgagcatc
     1441 gaggcgcact ccttcttccg ctacaacact cacctttctt tggtgctggc gctcgccctc
     1501 gcgcttgcgg cacgcgaatt cggagtgggg cggtggctgg tcggcggacg gttgcggctg
     1561 gtcgccggtc tggcgctggc ggcggccgta cttgcgcccc tcggctatgc ctaccgcctg
     1621 cgcttcgact tggacatgcc gcagccgctc gtccgcagcc ttgccgccaa cctgaagagc
     1681 tatctggccg atggcgatcg attggcgctg ctgctgcctg gcgacaacga cagcgtcgcc
     1741 acgatgatcg caggtgtgct tgcctacacg ccgccgcgcc gccgagggct cgatctgctg
     1801 cgccgcaata ccgccgatca ggccacgctc gacgaggccg cccggttggg ctatcgcctg
     1861 gctctcatat cctgcgt
//
LOCUS       DASQCV010000217         2100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2535175, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000217 DASQCV010000000
VERSION     DASQCV010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2535175"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..296)
                     /locus_tag="VEQ16_03300"
     CDS             complement(<1..296)
                     /locus_tag="VEQ16_03300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HYP62884.1"
                     /translation="MLKAFAWENGKLICLAPEDAARAIWFDLESAAPEEIAFVTRLTG
                     LALPGHADLAEIEASSRLATDGPVLTMSTPTVTRCADGLQAGVCGFVLSPERLVT"
     gene            complement(358..957)
                     /locus_tag="VEQ16_03305"
     CDS             complement(358..957)
                     /locus_tag="VEQ16_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007006420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP62885.1"
                     /translation="MDNRTRSERTREAVLQAALTIMTRDGAGRLTLDAIAKESGVSKG
                     GLLHQFPSKDAVITALLERQTARVEALAQQHLQAQGAGQLYPQLAAHIATSREVLSAP
                     AFALSFAMFGLLAQDPGLLARSRERDARKLAAIKSEAADPDLATLRWLAAKGLVQAAM
                     VGPSVITEEERERLFARLLDDAAWHALEHQARTPEVQAG"
     gene            1169..1735
                     /locus_tag="VEQ16_03310"
     CDS             1169..1735
                     /locus_tag="VEQ16_03310"
                     /inference="COORDINATES: protein motif:HMM:NF017771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF899 family protein"
                     /protein_id="HYP62886.1"
                     /translation="MSYRETVVQLNDYRRKIAGLRTEMRALQADIAPEPVQDYRFTTA
                     KGTVALSELFGDKPDLFVIHNMGKGCPYCTMWADGFNGVLAHLENRAAFVVSTPDDPA
                     TQEAFAASRGWHFRMVSHAGSDFAADMGYRGEHGFQPGVSVFRKEDGQVVRVSDAGLG
                     PGDDFCSVWHFFDLLPEGANGWRARFAY"
     gene            1735..>2100
                     /locus_tag="VEQ16_03315"
     CDS             1735..>2100
                     /locus_tag="VEQ16_03315"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYP62887.1"
                     /translation="MTKPAQAVPSVPARDEASARLDALFAALSDPVRRSILERLDGAD
                     MLVSELASAYDISLQAVSRHIQVLVSAGLIVQTRTGRISRCRLDAGPIAEAAAWINRY
                     AKYWDAQFRTLADHLLEIEN"
BASE COUNT          349 a          598 c          726 g          427 t
ORIGIN      
        1 gtgaccagcc gctcaggcga gagcacgaag ccgcacaccc cggcttgcag cccgtcggca
       61 cagcgcgtga cggtgggggt ggacatggtg agcaccgggc cgtccgtggc gaggcgcgag
      121 gaggcctcga tttcggcgag gtcggcatgg ccgggcagag cgaggccggt gagccgggtg
      181 acgaaggcga tttcttccgg ggcggcgctt tccaggtcga accagatggc acgcgccgcg
      241 tcttccggcg cgaggcatat caatttgccg ttctcccagg caaaggcttt gagcatgctg
      301 cgtcccttcg tgcgttgggc gcagccataa caaagctgcc aggggtttga aagcggctca
      361 gccggcctga acttcggggg tgcgagcctg gtgttccagg gcgtgccatg cggcgtcatc
      421 cagcaggcgg gcgaagagcc gttctcgctc ttcttccgtg atcacgctcg gccccaccat
      481 ggctgcctgc accagccctt tcgccgccag ccagcgcagc gtggcgaggt cggggtcggc
      541 ggcttcgctt ttgatggcgg cgagcttgcg ggcatcgcgc tcgcgcgagc gggcgagcag
      601 gccgggatcc tgcgccagta ggccgaacat ggcgaaagag agggcgaagg ccggcgcgct
      661 gagcacctcc cgcgaggtgg cgatgtgggc ggcgagctgc gggtagagct gcccggcgcc
      721 ttgcgcctgc agatgctgct gcgccagcgc ctcgacccgc gcggtctggc gttccagcag
      781 tgcggtgatg acggcgtcct tcgagggaaa ctggtgcagc agcccgcctt tgctgacgcc
      841 gctttccttg gcgatggcgt cgagcgtgag ccgcccggcg ccgtcgcgcg tcataatggt
      901 gagggcagcc tgaagtaccg cttccctggt ccgttccgat ctggtccggt tgtccatatt
      961 gtcttaatcc ctaatggcct ggccttatgt ggcagtgctg tgactcacca tagcaggggc
     1021 aaggcgggag ataaatttgt ggacgaatat aaactgtatg ggtgttggtt aatatcaatt
     1081 catatgttga atattaatat ttaagttgac tatcaatgta attgttgatt atctgccggc
     1141 atcacaaacc tcgatggagg gagcagccat gagctatcgc gaaacggtgg tgcaattgaa
     1201 tgattaccgg cgcaaaatcg ccgggttaag gacggaaatg cgggcgttgc aggcagacat
     1261 cgcgcctgag ccggtgcagg attaccgttt taccacagcg aaggggacgg tggcgttgtc
     1321 ggagttgttc ggggacaagc cggatctgtt cgtcatccac aatatgggca agggatgccc
     1381 ctactgcacg atgtgggccg atggcttcaa cggcgtgctg gcgcatctgg aaaaccgtgc
     1441 cgctttcgtc gtgtccacgc cggatgaccc cgccacacag gaggcgttcg cggcctcgcg
     1501 tggctggcac ttccgcatgg tgtcgcatgc gggcagcgat tttgccgccg atatgggcta
     1561 tcgcggcgaa cacgggttcc agcctggcgt ctcggtattc cgcaaggagg atgggcaggt
     1621 tgtgcgtgtg tccgatgcag ggcttgggcc aggcgatgat ttttgctctg tctggcattt
     1681 tttcgatctg ctgccggaag gggcaaatgg ctggcgcgcc cggtttgcct attgatgacc
     1741 aagccggcgc aagccgttcc gtccgtgccc gcgcgggatg aggcctcggc gcggctcgac
     1801 gctttgtttg cggcattgtc cgatcctgtc cgccgctcca tcctggagcg gctggatggg
     1861 gcggacatgc tcgtttcaga actggcgtcg gcgtatgaca tctcgctgca ggcggtctcg
     1921 cgccatatcc aggtgctggt gagtgccggg ctgatcgtgc agacccgcac cgggcgcatc
     1981 agccgctgca ggctggatgc cgggccgatt gctgaagccg cggcctggat taaccgctat
     2041 gccaaatatt gggatgcgca gttccgcacc ctggccgatc atctgctgga gattgagaac
//
LOCUS       DASQCV010000218         2742 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3033633, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000218 DASQCV010000000
VERSION     DASQCV010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2742
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3033633"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..879)
                     /gene="nudC"
                     /locus_tag="VEQ16_03320"
     CDS             complement(<1..879)
                     /gene="nudC"
                     /locus_tag="VEQ16_03320"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007004861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000210 - NAD+ diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HYP62888.1"
                     /translation="MRQIKPARPNPYSGGALDRAAHLREDDSYLARAVTDPAARVTYF
                     WQGKHLLTSHDDPRAHLLPLPAHEPPALFLGLHENAPLFAHDLSAHTAPPDFGAGQFH
                     DLRGIASLLPSDHAALLATARGMLHWHSTHRFCPACGNGLRPVRGGWVLHCDGCAREQ
                     FPRTDAAVIMLITKGDKLLLGQSHRFPPERNYFSTLAGFVEPGEALEDAVRREVFEEV
                     GVQVGEVMYHSSQPWPFPASLMLGYYGEALTEDIVLQESEMRAARWFTATDIENRHAL
                     GFELPPPDSIARALIED"
     gene            1011..1109
                     /gene="ffs"
                     /locus_tag="VEQ16_03325"
     ncRNA           1011..1109
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VEQ16_03325"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            1154..>2742
                     /locus_tag="VEQ16_03330"
     CDS             1154..>2742
                     /locus_tag="VEQ16_03330"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HYP62889.1"
                     /translation="MGLFDDDEAPPPPSGPSLFGDEPETAAPKAAAYRVLARKYRPTT
                     LNDMIGQDALVRTLRNAFAMDRIAHAFMLTGVRGVGKTTTARILARALNCTGPDGNGG
                     PTPDPCGVCENCIAILADRHPDVVEMDAASNTGVDDVREIIEATRFRPLSARIKVFII
                     DEVHMLSKAAFNALLKTLEEPPPHIKFVLATTEIRKVPVTVLSRCQRFDLRRVAVEVL
                     MAHFSWIAEAEGIKISTEALSHVARAADGSVRDGLSLLDQAIARGAEDGTEISGAMVA
                     DMLGLADRGFVFALMDAVVAGDAAQALQLADDAYERGADPGVLLSDLLGLSHLLMRIK
                     TVPSLASGSALPELERTGGVALAQMLSVPFLGRLWQMLLKGLQEVEAAPDKRAGAEMI
                     LIRLCFMADVPPPGELIKKLTENPGAALGGAPAPGPGNGGARAVAGGGVVMQEVPRAL
                     SFRDVVALAAQKRDVMLYAHLRQSAHLVRFAPPIIELRMEPTAPRDTVQKLAALLEME
                     TGRRWTIALSHLQGEPTIDEA"
BASE COUNT          483 a          855 c          930 g          474 t
ORIGIN      
        1 atcctcgatg agggcgcgcg cgatggaatc aggcggcggc aattcgaagc cgagtgcatg
       61 gcggttctca atgtcagtgg cggtgaacca tcgcgccgcg cgcatctcgc tttcctgcag
      121 cacgatgtcc tcggtcagcg cctcgccata atagccgagc atgagagagg cggggaacgg
      181 ccagggctgg ctggagtgat acatcacctc gcccacctgt acaccgacct cctcgaacac
      241 ttcgcgccgc accgcatcct ccaacgcctc acctggttcc acgaaaccgg caagggtgga
      301 aaaataattg cgctccggcg gaaagcgatg cgactggccg agtagcaatt tatcgccttt
      361 ggtgatgagc atgatgacgg cggcatcggt acgcgggaat tgctcgcgcg cgcagccatc
      421 gcagtgcagc acccagccgc cgcgcacagg gcgcaagcca ttgccgcagg cggggcagaa
      481 acgatgcgtg ctatgccaat gcagcatgcc gcgcgctgtg gcgagcaggg ccgcatgatc
      541 tgacggcagc aggctggcga tgccgcgcag atcgtggaat tgtcccgcgc cgaaatcggg
      601 cggcgccgta tgcgccgaga ggtcatgcgc gaagagcggc gcgttctcat gcagcccgag
      661 aaacagggca gggggttcat gcgccggcag gggcagtaga tgcgccctgg gatcgtcatg
      721 gctggtgagc agatgtttgc cctgccaaaa ataggtaacg cgggccgcgg gatcggtcac
      781 ggcgcgggcg agataggaat catcttcgcg cagatgcgca gcgcggtcga gcgcgccgcc
      841 gctataaggg ttcggccggg caggtttgat ttgacgcata gggtgaatct cgcatggcgc
      901 cccgaacttg ccaagtttgc gccaggcgag ctggcgcggg ctaagcggac gcagggcaag
      961 gccgcgctgg caaaacttgc acttcgggcc cggacagggg ataaggctgt gggggatcgg
     1021 cggcggacat cgcggcccgc caacctggtc agggccggaa ggcagcagcc ataacggatt
     1081 tcgcatgggt cgttgtccgg tcccccaccc tgaattcctt gcctttttca agcataacgg
     1141 gtggcgcgcc aaaatgggtt tgttcgacga cgacgaagca ccgccgccgc cgtccggccc
     1201 ctcgctcttc ggcgacgagc ccgagacggc agcgccgaaa gccgccgcct accgcgtgct
     1261 ggcgcgcaaa taccgcccca ccacgctcaa cgacatgatc ggccaggacg ccctggtgcg
     1321 caccttgcgc aacgccttcg ccatggaccg catcgcccac gccttcatgc tcaccggtgt
     1381 acgcggcgtc ggcaaaacca ccacggcgcg catccttgcc cgtgcgctca actgcaccgg
     1441 cccggatggc aatggcggcc ccacgcccga cccgtgcggc gtatgcgaga actgtatcgc
     1501 catcctcgcc gaccgccatc cggacgtggt ggagatggac gccgcctcca ataccggtgt
     1561 ggatgatgtc cgcgaaatca tcgaggcgac acgtttccgc cctttgagcg cgcgtataaa
     1621 agtcttcatc atcgacgaag tgcatatgct ctccaaggcg gccttcaatg cgttgctgaa
     1681 gacgctggag gagccaccgc cgcatatcaa attcgtgctg gccaccaccg agatacggaa
     1741 agttccggtc acggtactgt cgcgttgcca gcgtttcgat ctccgccgcg tcgcggtgga
     1801 ggtgctgatg gcgcatttct cctggatcgc cgaggcggag ggcatcaaaa tctccaccga
     1861 ggcgctaagc catgtcgcac gcgcggcgga tggatctgtg cgcgatgggt tgtcgctgct
     1921 cgaccaggcg attgcgcgcg gggcggagga tggcacggaa atttccggtg ccatggtcgc
     1981 ggacatgctc ggcctggcgg atcgcggttt cgtcttcgcg ctgatggatg cggtggtggc
     2041 tggcgatgcg gcgcaggctt tgcagcttgc cgatgatgcg tatgagcgcg gcgccgatcc
     2101 cggcgtgctg ctgagcgatc ttctcgggct gtcgcatctg ttgatgcgca tcaagactgt
     2161 gccgtctctg gcctcgggca gcgcgctgcc cgagttggag cgcacgggcg gcgtggcttt
     2221 ggcgcagatg ctctccgtgc ctttcctcgg ccggctctgg cagatgctcc ttaaggggct
     2281 gcaggaagtg gaagcggcgc cggacaagcg tgccggtgcc gaaatgatac tgatccgcct
     2341 gtgcttcatg gccgatgtcc cgccgccagg cgagctgatt aagaagctga cggaaaatcc
     2401 gggcgccgct ctgggtggcg cgcccgcacc cggtcctggc aatggcggcg cgcgcgccgt
     2461 ggccggtggc ggcgtggtga tgcaggaggt gccccgagct ttgagcttcc gcgatgtggt
     2521 ggcgctggcg gcgcagaaac gcgacgtcat gctgtacgcg catctgcggc aatcggcgca
     2581 tttggtgcgt tttgcgccgc ccatcattga gctgcgcatg gagcccaccg cgccgcgcga
     2641 cacggttcaa aagctggccg ccttgctgga gatggaaacc ggacggcgct ggacgatcgc
     2701 gctctcgcat ctgcaaggcg aaccgaccat cgacgaggcc ga
//
LOCUS       DASQCV010000219         1897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2204460, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000219 DASQCV010000000
VERSION     DASQCV010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1897
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2204460"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..944
                     /locus_tag="VEQ16_03335"
     CDS             <1..944
                     /locus_tag="VEQ16_03335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYP62890.1"
                     /translation="CGKTTLLRMIAGFETPDEGRILISGREMQDVPAHKRAVNTVFQS
                     YALFPHLNVEQNIGFGLKMQGVKAAERKKRVDAIMDLMQIGQFATRSAAQLSGGQRQR
                     VALARALVNEPEVVLLDEPLSALDAKLRAELQIELLRMQKRLGMTFIFVTHDQHEALV
                     MSDRIAVMSRGKIQQTGPVLDVYEKPKNVFVAEFLGLSNIWPFEPCSSHEGNTAIGVL
                     NIGETLTGPGMAMIRPEKIWIYNDTAAPQGRPNVFLGAIREAIYMGASTQYRIELNCG
                     QFVTAYDTNNQAAERSWRPGEAVAVELKPENIMLVEP"
     gene            1003..>1897
                     /locus_tag="VEQ16_03340"
     CDS             1003..>1897
                     /locus_tag="VEQ16_03340"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP62891.1"
                     /translation="MSNRVKTEVEYEAGRQRLRLLSTSGPGLFWIILFLLIPSGVLLG
                     IAFFSADDYGNPVLPLSVQPFQQVAGFSLLGWDPGNIIIFLRSLKQAGIATFVTALLS
                     YPLVFFILSRPESVRPLLLLFIVLPSWTNQVVRTYAWMELLGPNAPVTWIAHHLGLVP
                     PFLGLAPGSFAVTTGLAYNYLPYMIVPLYASAEKLDWTLVEAGRDLYASGVKLFWHTV
                     FPQTVPGLLSGVIFVAIPAFGDYVVPQLLGGDKALMIGSLIGNQFTETPDWPYGAALT
                     IIMLVLTGLGLVGFRILTQKIG"
BASE COUNT          323 a          655 c          557 g          362 t
ORIGIN      
        1 gctgcggcaa gaccacgctt ctgcgcatga tcgccgggtt cgagacaccc gatgaaggcc
       61 gcatcctcat ctccggccgc gagatgcagg acgtcccggc ccataagcgc gccgtcaaca
      121 cggtgttcca gtcttacgcg ctctttcccc accttaatgt ggagcagaat atcggcttcg
      181 ggctgaagat gcagggggtg aaggctgcag agcgcaagaa gcgcgtggat gccatcatgg
      241 atctgatgca gatcggccag ttcgccaccc gcagcgccgc ccagctttcc ggcggccagc
      301 gccagcgcgt ggcgctggcg cgcgccttgg tgaacgagcc tgaagtggtg ctgctggacg
      361 agccgctctc cgccctggac gccaagctcc gcgccgaact gcagatcgag ctgctgcgga
      421 tgcagaagcg cctggggatg acatttattt tcgtcaccca cgaccagcac gaggcgctgg
      481 tgatgtccga ccgcatcgcg gtgatgagca ggggcaagat ccagcaaacc ggcccggtgc
      541 tggatgtgta tgagaagccg aaaaacgtct tcgtcgcgga atttctcggc ctgtccaata
      601 tctggccctt cgagccctgc tcgtcccatg agggaaacac cgccatcggc gtgctgaata
      661 tcggcgagac cctcaccggc cctggcatgg ccatgatccg gccggagaag atctggatct
      721 ataacgatac tgccgcgccc caaggccggc ccaacgtctt cctgggcgcc attcgcgagg
      781 ccatctatat gggcgcctcc acccagtacc ggatcgagct caattgcggc cagttcgtca
      841 ccgcctacga caccaacaac caggccgccg aacgcagctg gcgccccggc gaagcggtgg
      901 cggtggaatt gaagcctgaa aacattatgt tggtggaacc gtgaattgcg gcgcgaggca
      961 tatcggggct gaagcccgga gcaaaaacat gctggtggaa ccgtgagcaa ccgggtcaaa
     1021 accgaggttg aatacgaggc cgggcgccag cgcctgcggc tgctttccac ctccggccct
     1081 ggcctcttct ggatcatatt attcctgctc atcccctccg gggtgctgct cggcatcgcc
     1141 ttcttctcgg ccgatgatta cggcaatccg gtcctgcccc tctcggtgca gcccttccag
     1201 caggtggccg gcttctcgct gctcggctgg gaccccggca acatcatcat cttcctgcgc
     1261 tcgctgaagc aggccggcat cgccaccttc gtcacggcgc tgctgtccta cccgctggtt
     1321 ttcttcatcc tctcgcgccc ggaatcggtc cgcccgctgc tgctgctctt catcgtgctg
     1381 ccgagctgga ccaaccaggt ggtgcgcacc tatgcctgga tggagctgct tggtcccaac
     1441 gcgcccgtca cctggatcgc ccatcatctc ggcctcgtgc cgcccttcct cggcctcgcc
     1501 cccggcagct tcgccgtcac caccggcctt gcttacaact acctgcctta catgatcgtc
     1561 ccgctctacg cctcggccga gaagctggac tggaccctgg tggaagccgg gcgcgacctc
     1621 tacgcctcgg gcgtaaaact cttctggcac acggtcttcc cgcaaaccgt gccgggcctg
     1681 ctctcgggtg tcatcttcgt cgccatcccc gccttcggcg actacgtggt gccgcagctg
     1741 ctgggcggcg acaaggcgct gatgatcggc tcgctcatcg gcaaccagtt caccgaaacg
     1801 ccggactggc cctatggcgc ggcgcttacc atcatcatgc tggtcctcac cggcctcggg
     1861 ctggtcgggt tccgcatcct cacccagaaa atcggcg
//
LOCUS       DASQCV010000220         2050 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2204477, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000220 DASQCV010000000
VERSION     DASQCV010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2204477"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1179)
                     /locus_tag="VEQ16_03345"
     CDS             complement(<1..1179)
                     /locus_tag="VEQ16_03345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HYP62892.1"
                     /translation="MRKLLLATAASLSTLLAAGTANAQSLKPVAPGTIQVHLNGYLQF
                     MMGVVGGNGMSGGSVAAGTAWKNNSVGTIGDVRLLPGFDGMTVNGISYGAQVELRTTT
                     SNANGGGANGNSTSTNGTNSIYVRRAYGYIGTPEYGYVRFGQGDGAFTLLQRGVIEQF
                     GDGGQWTLDGGLDNLLPGGQPTQFIYADQGSLYTTNKIVYLSPAIIDPILQGKFSVGA
                     SYEPNSNGIKEGAATISGPLSELNNAVPGGSATRRQNTWDVMADYQVKVDGFANKISL
                     GYLTSSPLGNTTGKQAYSPMGVFQAGAQTTYTGLFTDSDAITFGANIKTGSVVDKYAF
                     KKAGGRNALAYIVGGTYVNGPYVLGASFFDSQENNGTVGKGPQGHTLSEYGVAVGANY
                     I"
     gene            complement(1537..>2050)
                     /locus_tag="VEQ16_03350"
     CDS             complement(1537..>2050)
                     /locus_tag="VEQ16_03350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HYP62893.1"
                     /translation="FTDEARLPDPLPVIAQLPRGLCGVVFRHDGAANRLMLGRQVAAL
                     CRARRLELVVAGDARLAARLQAGLHLRGGRRGLLQLPRIVTSSAHAPEELLRARRAGA
                     RLIFISPVFVTKSHIGGKVLGGAGWRRLARLAGQTSSAALGGITGQRLRALGPGCAAA
                     GAIEAFFPRL"
BASE COUNT          388 a          648 c          645 g          369 t
ORIGIN      
        1 gatgtagttc gcgccgacgg ccacgccgta ttcgctcagc gtatgaccct gcgggccctt
       61 gccgacggtg ccgttgttct cctggctgtc gaagaaggag gcgccgagca cataggggcc
      121 attcacgtag gtgccgccaa cgatataggc gagggcgtta cggccgcccg ccttcttgaa
      181 ggcatatttg tcgaccacgg aaccggtctt gatgttggcg ccgaaggtga tggcgtcaga
      241 gtcggtgaac aggccggtat aggtggtctg cgcgccagcc tggaacacgc ccatcggcga
      301 gtaggcctgc ttgccggtgg tgttgccgag cggcgaggag gtcaaatagc cgagcgagat
      361 cttgttggcg aagccgtcga ccttcacctg gtagtcagcc atcacgtccc aggtgttctg
      421 gcggcgggtc gcgctgccgc caggaacggc gttgttcagc tcgctcagcg ggccggagat
      481 ggtggcagcg ccttccttga tgccgttgga gttcggctca taggaggcac cgacggagaa
      541 cttgccttgc aggatcgggt cgatgatcgc cggggagagg tacacgatct tgttggtcgt
      601 gtagagcgag ccctggtcgg catagatgaa ctgggtcggc tggccgccag gcagcaaatt
      661 gtccaggccg ccatcgagcg tccactggcc gccgtcgccg aactgctcga tcacgccgcg
      721 ctgcagaagg gtgaaggcgc catcgccctg gccgaagcgg acatagccgt actcgggggt
      781 gccgatatag ccataggcgc gacggacata gatgctgttc gtgccgttgg tggaggtgga
      841 gttgccgttc gcgccgccgc cattggcatt ggaggtggtg gtacgcagct cgacctgggc
      901 accataggag atgccgttca cggtcatgcc gtcaaagccg ggcagcaggc ggacgtcgcc
      961 gatcgtgccg accgagttgt tcttccaggc ggtgccagcg gcgaccgagc cgccggacat
     1021 gccgttgcca cccacgacgc ccatcatgaa ctgcagatag ccgttcaggt ggacctggat
     1081 ggtgccggga gcaaccggct tgagcgactg ggcgttagcc gtgccggcgg cgagcagggt
     1141 gctcagcgaa gccgcggtgg ccagaagaag tttacgcatg aattcatctc ctagatcgcc
     1201 gggttgcccc ggcattcgtg tcgttgagag cctcgaaaag gccgcttcac ggcccaaccg
     1261 ttacggccgg ctggccgaac gctcgccgcc cttaaaaccg catcttaata gagaggcaac
     1321 gtcttgcgca cactgaacgg gcatttcact atcactgtgt cttcgccgca acatgtatat
     1381 gacgttgata tgaaattttc gaataaaaaa tgctgtaaaa ttcacaaaat gtcagttttg
     1441 tgacagtcgg cggccttata taaatattaa taccatagac ttatttccgg accgtcacat
     1501 gccggcttcc gcgcccgtcc gcatgacaaa aaactgttac agtctgggaa aaaacgcctc
     1561 gatcgccccc gccgcggcgc atcccgggcc caaggcgcgc aggcgctgcc cggtaattcc
     1621 tcccaaagca gctgaacttg tctgccccgc caggcgcgcc agccggcgcc agcccgcccc
     1681 ccccaatacc ttaccgccaa tgtggctttt tgtgacgaaa accggggaga tgaagatgag
     1741 cctggccccc gcccgccgcg cccgcaacaa ttcttccggc gcatgtgccg aagacgttac
     1801 aatccgcggc agttgcagca gcccgcgccg cccgccgcgc agatgcagcc ccgcttgcag
     1861 gcgcgccgcc agccttgcat cgcccgccac caccagctca agccgccgcg cccggcacaa
     1921 ggccgccacc tgccgcccca gcataagccg gtttgccgcg ccatcatgcc ggaacaccac
     1981 gccgcacagg ccgcgcggca attgcgcgat caccggcagc gggtcgggca ggcgcgcttc
     2041 gtccgtgaaa
//
LOCUS       DASQCV010000221         2340 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2204844, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000221 DASQCV010000000
VERSION     DASQCV010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2204844"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..753
                     /locus_tag="VEQ16_03355"
     CDS             82..753
                     /locus_tag="VEQ16_03355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008851210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HYP62894.1"
                     /translation="MNNPTQLPPRREAVRLKNARKLSTSSQRWLQRQLNDPYVTAAKA
                     QGWRSRAAFKLIELDEKYHLISKGARVVDLGAAPGGWSQVALARGAAQVVGIDLLPIE
                     PVEGATFIHGDFMEEGMEQRLTELLGGKADLVLSDMAPNTSGHVATDHLRIMALAELA
                     LSFACDVLAPGGAFVAKLFQGGAERDMLNTLKLRFRTVRHAKPPASRKDSKEMYVVAT
                     GFRPD"
     gene            867..>2340
                     /gene="guaB"
                     /locus_tag="VEQ16_03360"
     CDS             867..>2340
                     /gene="guaB"
                     /locus_tag="VEQ16_03360"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003620379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HYP62895.1"
                     /translation="MASDTPYKIDFSDRIAEALAFDDVLLVPAYSQVLPTGVQTATRL
                     TREISLNIPLISAAMDTVTEAAMAIAMAQQGGIGVIHKNFTIEEQAAQVRKVKKFESG
                     MVVNPLTIYPDQTLADARALMAQHHISGFPVVERDGKLVGILTHRDVRFATDPNAKIY
                     ELMTRENLAVVTAGVSPEEARALLHKRRLEKLLVVDENFHCVGLMTVKDMDKAEAHPL
                     ANKDELGRLRVAAATGVGNDGADRAQALVEAGVDVVVVDTAHGHSDGVLKAVTRIKQA
                     SNNVQIIAGNVATPDGARALIDAGADAVKVGIGPGSICTTRVVAGVGVPQFTAVLETA
                     AACRAMGVPAIADGGIRASGDMVKALAAGADAVMVGSMLAGTDEAPGEVFLYQGRSYK
                     SYRGMGSLGAMARGSADRYFQQDIKDSLKLVPEGVEGQVPYKGAAATVLHQLAGGLRA
                     AMGYVGAKTLAELHAKAEFVRISGAGLRESHVHDVVITREN"
BASE COUNT          411 a          771 c          773 g          385 t
ORIGIN      
        1 cgtcgccgac cgcggcctgc gcgaaggcat gttgctgcgc ctcatgcgcg gcacccccgc
       61 ccatcgccgc cgctaccacg catgaacaac ccgacccaat tgccgccacg ccgcgaagcg
      121 gtgcggctga aaaacgcgcg caagctttcc acctcgtcgc agcgctggct gcagcgccag
      181 ctcaacgacc cgtacgtaac cgccgccaag gcgcagggct ggcgctcccg cgccgccttc
      241 aagctcatcg agctggatga gaaataccat ctcatctcca agggggcgcg tgtggtcgat
      301 ctgggtgctg cccccggtgg gtggagccag gtggcgctgg cgcgcggggc ggcgcaggtg
      361 gtgggaatcg accttctgcc gatcgagccg gtggaggggg ccaccttcat ccatggtgac
      421 ttcatggaag agggcatgga acagcgcctg actgagctgc tcggcggcaa ggcggacctg
      481 gtcctctccg acatggcgcc caacacctcg ggccatgtcg ccacagacca cttgcgcatc
      541 atggcgctgg ccgagctggc gctgagcttc gcctgtgacg ttctggcgcc aggcggcgcc
      601 ttcgtggcca aattatttca gggcggcgcc gagcgcgaca tgcttaacac gctgaaattg
      661 cgtttccgca cggtccggca tgccaagccg ccggccagcc ggaaggattc caaggaaatg
      721 tatgtcgtgg cgacggggtt ccggcctgat tgactccggc tgagccaccc gcgcgccgca
      781 tataggggtt gtgacaccgg acgcttgcac cgcaatcccc gcgcagttat tgggaaccgc
      841 caaggtcttc atttgaaagc gcggccatgg catctgacac cccgtacaaa atcgatttca
      901 gcgaccgcat cgccgaggca ctcgcctttg acgatgttct gctggtgccg gcctattccc
      961 aggtgctgcc aacaggggtg caaaccgcaa cccggctgac gcgcgaaatc tcgcttaaca
     1021 tcccgctcat ttccgccgcc atggacacgg tgacggaggc cgccatggcc atcgccatgg
     1081 cgcagcaggg cggaatcggc gtgattcaca agaacttcac aatcgaggag caggccgccc
     1141 aggtccgcaa ggtgaagaaa ttcgagagcg gcatggtcgt caacccgctc accatctacc
     1201 cggaccagac gctggccgac gcccgcgccc tgatggcgca gcaccatatt tccggcttcc
     1261 ccgtggtgga gcgggacggc aagctggtcg gcatcctcac ccaccgcgac gtgcgcttcg
     1321 ccacagaccc caacgccaag atttacgagc tgatgacgcg cgagaacctc gccgtggtca
     1381 cagcaggtgt ttcccctgag gaagcgcgcg ccctgctgca taagcgccgt ttggagaaat
     1441 tgctggtggt ggacgagaat ttccactgtg tcgggctgat gacggtaaag gacatggaca
     1501 aggccgaggc ccatcctctg gccaacaagg acgagctagg ccgcctgcgc gtggccgccg
     1561 ccaccggcgt gggcaatgac ggcgccgacc gcgcccaggc cctggttgag gccggggtgg
     1621 atgtggtggt ggtggacacc gcccatggcc actcggacgg cgtgctgaaa gccgtgacgc
     1681 gtattaaaca ggcctccaat aatgtgcaga tcatcgccgg caacgtggcc acgccggacg
     1741 gcgcccgcgc cctcatcgat gccggtgccg atgcggtgaa agtgggcatc ggcccgggct
     1801 ccatctgcac cacccgcgtg gtggccgggg tcggcgtgcc gcaattcacc gccgtgctgg
     1861 aaaccgccgc ggcctgccgc gccatgggtg tgcccgccat cgccgatggc ggcatccgcg
     1921 cctcggggga catggttaag gcgctcgccg cgggcgccga tgccgtgatg gttggctcca
     1981 tgctggccgg cacggatgag gcgccgggcg aggtgttcct ctatcagggc cgctcctata
     2041 aatcctatcg cggtatgggt tcgctcggcg ccatggcgcg cggctcggcc gaccgttatt
     2101 tccagcagga catcaaggat tcgctcaagc tcgtgccgga aggtgtcgag gggcaggtgc
     2161 cctacaaggg cgcggcagcg accgtcctgc atcagcttgc cggcgggttg cgcgccgcca
     2221 tgggctatgt gggcgcgaag acgctcgccg agctgcatgc caaggccgag ttcgtccgca
     2281 tttcgggcgc tgggttgcgc gagagccacg tgcacgacgt ggtaatcacg cgagagaacc
//
LOCUS       DASQCV010000222         1682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2535827, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000222 DASQCV010000000
VERSION     DASQCV010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2535827"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            28..>1682
                     /locus_tag="VEQ16_03365"
     CDS             28..>1682
                     /locus_tag="VEQ16_03365"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HYP62896.1"
                     /translation="MIGISLIGLSTIGLIFLDFLKTPGVGLRILLTGLICCDYAALIA
                     RARLWLRRLHPTARDADNYIRAMCRLLVLLGVIWSMLLVVLMQQRNLDQLCLLYGVFV
                     GCLATPVMVAPVACALSYWVPVSIGILIAGFSASVLEPVVMVNLVAFMALTGFCILYV
                     NNRLNERAIGAIRLEENAAVIKLLLRDFEESASDWLWETDAQLRMQPVSHRLAQVARR
                     PVESFEGLFPAALLGPTASLAKPGTALERLNRAIAERSPFRDLVVPVQVVGEERFWSL
                     TGKPILDQHGRFAGYHGVGSDITGQRRQQEHISFLARHDSLTKLANRMLFSEMLHQMC
                     EQCDSTGIALLCLDLDNFKTVNDTLGHATGDAVLVAVAERIRGCIREIDMAARLGGDE
                     FAVIIVTEEVEEALHVARRIIERITRPFHFDGQLVQIGTSIGITIAPADGQTPAMLMK
                     NADLALYRAKFDGRGVARLYDPEMDARVQERRTLQTALRHAVARKELALYFQPIIDLP
                     GGQITGAEALIRWNHPERGLLLPGDFIGLAEESGLIVEIGEWVL"
BASE COUNT          270 a          546 c          519 g          347 t
ORIGIN      
        1 gatcaagcga ccgacttcag ctatatcatg atcggcatct ccctcatcgg ccttagcacg
       61 atcgggctga ttttcctcga ttttctgaaa acccccgggg tcggtctgcg catcttgctg
      121 acgggcctca tctgctgcga ctatgccgcc ctcatcgctc gcgcgcgcct ctggctgcgc
      181 cgcctgcatc ccactgcgcg cgatgcagac aattatatac gggccatgtg ccggctgctg
      241 gtgctgctgg gcgtcatctg gtcaatgctg ctggtggtgc tgatgcagca gcgcaatctc
      301 gaccagctct gcctgcttta cggtgtgttt gtcggctgcc ttgccacacc ggtcatggtg
      361 gcgcctgtgg cctgcgcctt gtcttactgg gttccagtct ccatcggcat cctcatcgcc
      421 ggcttttccg ccagtgtgct ggagccggtg gtgatggtga atctcgtcgc cttcatggcg
      481 cttaccggct tttgcattct ttatgtgaat aaccggctca atgagcgcgc catcggcgcc
      541 atacggctcg aagagaatgc cgcggtcatc aagctgctgc tgcgcgattt cgaggaaagc
      601 gcctcggact ggctgtggga gacggacgct caattgcgca tgcagcccgt cagtcaccgc
      661 ctcgcccagg tggcacgccg gccggtggag agtttcgagg ggctatttcc cgcagcactt
      721 cttggcccca ccgcatcgct ggccaagccc ggcacggcgc tggagcggct gaaccgggcc
      781 attgccgagc gctcgccatt ccgcgatctc gtcgtgccgg tccaggtggt cggggaggag
      841 cgcttctggt cgctcaccgg caagccgatc ctcgaccagc atggccgctt cgccggctat
      901 cacggggtgg gttccgacat taccggccag cgccgccagc aggagcatat atccttcctc
      961 gcccggcatg acagcctgac caagctcgcc aaccgcatgc tgttctccga gatgctgcac
     1021 cagatgtgcg agcaatgcga cagtaccggg atcgcgctgc tctgcctcga tcttgataat
     1081 ttcaagacgg tcaacgacac gctgggtcat gccactggcg atgccgtgct ggtggcggtg
     1141 gccgagcgca tacgcggctg catccgcgag atcgacatgg cggcgcgcct gggcggcgac
     1201 gaattcgccg tcatcatcgt caccgaggag gtggaggagg cgctgcatgt cgcgcggcgc
     1261 atcattgagc gcatcacccg gcccttccat ttcgatggcc agctggtgca gatcggcacg
     1321 agcatcggca tcaccattgc ccctgccgac ggccaaaccc ctgccatgct gatgaagaat
     1381 gccgacctcg ccctgtaccg cgccaaattc gatgggcgcg gcgtggcccg gctctacgac
     1441 ccagagatgg atgcacgtgt acaggagcgg cgcaccctgc agacggcctt gcgccacgcc
     1501 gtggcccgga aggagcttgc gctgtatttt cagccgatca tcgaccttcc cggcggccag
     1561 attaccggtg ccgaggcact catacgctgg aaccatcctg agcgcggcct gctgcttccc
     1621 ggcgatttca ttggcctggc cgaagagagc gggctgattg tcgagattgg cgagtgggtg
     1681 ct
//
LOCUS       DASQCV010000223         1907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1541443, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000223 DASQCV010000000
VERSION     DASQCV010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1541443"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1369)
                     /locus_tag="VEQ16_03370"
     CDS             complement(<1..1369)
                     /locus_tag="VEQ16_03370"
                     /inference="COORDINATES: protein motif:HMM:NF013124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP62897.1"
                     /translation="MTGLGGLGKTQLAAEFAHRYGQYFAGGVFWLNCSKAEDVPGQVV
                     RCGGAEGLALREDFDDLPQAQQLALVKGVWSNPLPHLLILDNCEEQELLKQSRPTASG
                     ARVLLTSRKANWRRALGVQMLPLGVLTAAESVALLHQHRPDLAANDPELAKIAATLGH
                     LPLALHLAGSYLERYRYATSGHPAVYLAELQSAELTHRSLSLVEGENDGESSPTEHEL
                     HVAHTFAFSWDQLNPDYPADALARRLLLYASCFAGGEPIPRDLLKASIGVTEAAVELE
                     RQAEDALGRALSLGLLEERADGALVLHRLLGAFVRRAAAGELPAALDAVEGTIEEAAG
                     RLNQAGYPAPLTAWRAHLRAVAEAVAVRESAQAGVLLNELGYHLQSVAEFADARTALE
                     RALTIDEKVYGPEHPNVAIRVNNLGRVLQDLGDLAGRRRHSSGRWQYLRPACPLIIQA
                     FGPSEV"
BASE COUNT          352 a          649 c          536 g          370 t
ORIGIN      
        1 ttacctcgga cggtccgaat gcttggatga tcagcgggca agcgggcctc aaatattgcc
       61 agcgcccgct cgaatgccgt ctgcgccccg ccaaatcacc caagtcctgc agcactcggc
      121 cgagattgtt cacacggata gcgacattcg gatgctcggg cccatagacc ttttcgtcga
      181 ttgtcagcgc ccgctctaat gccgtccgcg catcggcaaa ttcggccacg ctttgcaggt
      241 gatagcccag ctcattgagc agcacgcccg cctgcgcgct ctcccgcacc gccaccgcct
      301 ccgccaccgc gcgcaaatgc gctcgccacg ccgtcagcgg ggccgggtag ccggcctgat
      361 tcagcctgcc ggctgcttcc tctatcgtcc cttccaccgc atccagcgcc gccggcaact
      421 cgcctgccgc cgcgcgccgc acgaaggctc ccagcagccg gtgcagcacc agcgcgccgt
      481 cagcgcgttc ctccagcaag cccaggctca acgctcgtcc cagtgcgtct tcggcttgcc
      541 gctccagctc gaccgccgct tccgtcactc cgatgcttgc cttgagcaaa tcgcgtggaa
      601 tcggttctcc tccagcgaag cagctcgcat agagcagaag gcgccgcgcc agcgcatcgg
      661 ctgggtagtc ggggttgagc tggtcccagc tgaaggcgaa ggtatgggcc acgtgcagct
      721 catgctcagt gggcgaactc tcgccgtcgt tctcgccctc aaccaacgac aacgaccgat
      781 gggttagctc agcgctttgc agctcggcca gatagactgc cggatggcca ctggtggcat
      841 agcgatagcg ttcgaggtag cttcccgcca gatgcagcgc cagcggcagg tgccccagcg
      901 tcgctgcaat ttttgccagt tcaggatcgt tcgcggctaa atcggggcgg tgctggtgca
      961 acagcgcgac gctctccgcc gctgtgagca cgcctaatgg cagcatctgc acccccagcg
     1021 cccgccgcca attggccttg cggctggtca gcagcacgcg cgcgccgctg gccgttggcc
     1081 gcgattgctt gagcagttcc tgctcctcac aattgtccag gatcagcagg tggggcaggg
     1141 gattgctcca tacccctttg accagcgcca gctgctgggc ttgaggcaaa tcgtcgaagt
     1201 cctcgcgcag cgccaaaccc tctgcgccgc cgcagcgcac gacttggccc ggcacgtctt
     1261 cggctttgct gcagttgagc cagaacactc cgccggcaaa atactgaccg tagcggtggg
     1321 cgaactcagc ggccagctga gtcttaccca gtccgcccag cccggtcact gccgccgcca
     1381 tctcgccatc cttgatgatc gttgccagct gccgcaaatc cctatcgcgc cctacgaaca
     1441 gcgggttatg ccgcaccgat atgcacgatc ctgccggcag cgccgccggc gccggtactg
     1501 cttccagcgg caaccctgca aactgttccg cccctgcttt gatttcttct ggttgaaggc
     1561 gggcgggaat aagccccatc gggaaattaa gctgcgaacc ctggattaga ttcgccgctc
     1621 ggaaatcacc gggattgtga aactccgaca taatgtattg tggtgctaca ataaagttag
     1681 atgcaccatt gagacaagtt taagccggaa tttccatttt gaatcctgat tcagactccc
     1741 atcaacaccg agtggtttgc aaacacaaag ttcgagctcg gctttgagtc caaaggctgt
     1801 tcacagcact tcaactggcc tgttctgcct cgggaggtca atactgcccc cggttcgcag
     1861 atcttcctgg agccgatgag ccggaaagtc ggattctgag aaagacg
//
LOCUS       DASQCV010000224         1933 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3034883, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000224 DASQCV010000000
VERSION     DASQCV010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1933
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3034883"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..227)
                     /locus_tag="VEQ16_03375"
     CDS             complement(<1..227)
                     /locus_tag="VEQ16_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007005526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HYP62898.1"
                     /translation="MDWKAHGIRIVRAGELDTNTPQTPGMTRAAAITHATAGAQKLWA
                     GTVVVEPDAKTGAHHHGELETVLYIVKGRAR"
     gene            269..1753
                     /locus_tag="VEQ16_03380"
     CDS             269..1753
                     /locus_tag="VEQ16_03380"
                     /inference="COORDINATES: protein motif:HMM:TIGR00924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HYP62899.1"
                     /translation="MGRLTEPEPWQDTRFYGHPRGLATLFFTEMWERFSYYGMRAILI
                     LYMVAPTSSGGLGFSVAKGGAVYGFYTAMVYLLSLPGGWVADRIIGQQKAVLYGGILI
                     AAGEFSLAAPGLPWFYLGLVLLMVGTGLLKPNVSTIVGQLYKPNDVRRDSGFSIFYMG
                     INIGALISPLICGYLGERVSWRLGFGAAGVGMLAGLIQYVLSAKYLGAAGLRPSGTGD
                     PLKDQREKRHGVLAAMGALAILAIVAVFSRTGIIDLTAESISDALGWLLMIISVAVFA
                     WLIFGRSWSAIERKRAVAILVLFVSSAIFWAAYEQAGSSLNLFAERNTDRRVLGWEFP
                     ASWFQFVQPVFVILLAPVFAWLWLALRHREPSIPAKFAGGLLLGGLAFALLVPAAAGS
                     KMASPWWLTGTYFLQTLGELCLSPVGLSAMTKLAPARVAGFVMGVWFLSISIGDWAAG
                     KAASFYESMALPNLFGAVAALSLVAVLLMAVMIKPTVRLMAGVK"
     gene            complement(1716..>1933)
                     /locus_tag="VEQ16_03385"
     CDS             complement(1716..>1933)
                     /locus_tag="VEQ16_03385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62900.1"
                     /translation="LGEGVVDWTQFFATLAHARFSGPLTLQSDYPAAHRVEAIQRDLD
                     FARKHLTGAYQKVTEPTSRPPSASPSA"
BASE COUNT          276 a          606 c          641 g          410 t
ORIGIN      
        1 aatcgtgcgc ggcctttcac gatgtacagc acggtctcga gctccccgtg gtggtgggcc
       61 ccggtcttgg cgtccggctc gaccaccacc gtacccgccc acagtttctg cgccccagcg
      121 gtggcgtggg tgatggcggc cgcgcgcgtc atgcccggtg tctgcggagt gttcgtgtcc
      181 aactcgccgg cccggacaat ccgaatgccg tgggctttcc aatccatttc gccatgctag
      241 caaacccgga atggtacact ggcggtcgat ggggcgcctg accgaaccgg agccgtggca
      301 ggatacccgc ttctatggcc acccgcgcgg cctcgccact ctcttcttca ccgagatgtg
      361 ggagcggttc agctactacg ggatgcgcgc catcctgatt ctgtacatgg tggctcccac
      421 gagttcgggc gggttgggtt tctccgtcgc caagggaggc gcggtctacg gtttttacac
      481 ggccatggtg tatctgctca gcctgccggg aggctgggtg gccgaccgca tcattgggca
      541 gcagaaggcc gtgctgtacg gcggaattct gatcgccgct ggcgaattct cgctggccgc
      601 gccggggctg ccgtggtttt atctggggct ggtgctgctc atggtcggaa ccgggctgtt
      661 gaagcccaac gtcagcacca tcgtcggcca actctacaag cccaacgatg tgcggcgcga
      721 ttccgggttt tccatctttt acatggggat caacatcggc gcgctgattt cgccgctgat
      781 ctgcgggtac ctcggcgagc gggtcagctg gcggctggga ttcggggcgg cgggcgtcgg
      841 catgctggct ggcctgattc aatatgtgtt gagcgccaaa tacctcggcg ccgcgggcct
      901 tcgccccagc ggtaccggag accccttgaa agaccagcgc gagaagcgcc acggcgtgct
      961 ggcggcgatg ggcgcgctgg ccatattagc gatcgttgcg gtgttcagcc ggaccgggat
     1021 catcgacttg accgccgaat cgatttccga tgcgctcggc tggctgctga tgatcatctc
     1081 ggtggcggtc ttcgcctggc tgattttcgg ccgcagctgg tctgccatcg agcgcaagcg
     1141 cgccgtcgcg attttagtgc ttttcgtatc ctccgcgatc ttctgggccg cctacgagca
     1201 ggccggctcc tccctcaacc tgtttgccga gcgcaatacc gaccgccgcg tcctgggctg
     1261 ggaatttccg gcaagctggt ttcagtttgt gcaacccgtg ttcgtcattc tactggcacc
     1321 ggtcttcgcc tggctgtggc ttgcgctgcg ccaccgcgag ccctccatcc ccgccaaatt
     1381 cgctgggggc ctgctgctgg gcggcctggc tttcgccctc ctggtgccgg cggccgccgg
     1441 cagcaagatg gcctccccct ggtggctcac cggaacctac ttcctacaaa ccctcggaga
     1501 attatgcctg agccccgtcg gattgagtgc catgaccaag ctcgccccgg cgcgggtggc
     1561 cgggttcgtg atgggtgtct ggtttttgtc gatcagtatt ggcgactggg ccgccggcaa
     1621 ggcggcgtcg ttctacgagt cgatggcgct gccaaacttg tttggcgccg tagccgcgct
     1681 cagtctggtc gcggtacttc tgatggcagt catgatcaag ccgacggtga ggctgatggc
     1741 gggcgtgaag taggctcggt caccttctgg taagccccgg tgaggtgctt gcgcgcgaag
     1801 tcgagatcgc gctgaatggc ctcgacgcgg tgggcagcgg ggtaatccga ctgcagcgtc
     1861 agcggcccgg agaatcgggc gtgcgccagt gtggcgaaga actgggtcca gtcgaccacc
     1921 ccttcgccca acg
//
LOCUS       DASQCV010000225         1551 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1707665, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000225 DASQCV010000000
VERSION     DASQCV010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1707665"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..728
                     /locus_tag="VEQ16_03390"
     CDS             <1..728
                     /locus_tag="VEQ16_03390"
                     /inference="COORDINATES: protein motif:HMM:NF013677.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HYP62901.1"
                     /translation="DPETETKKMGTVLEEENWMPRKARIFSREFKVSVIRRLQAGETV
                     SAIARELQVRRKDLYIWQERFRTGGAAALRGRGRPRKVVIRAPPGAGSLPAAADLAAV
                     QRRICRVGAQDRATAAGAGFFSASLAASQRTAPAERRVWRHAVYALIEAMTAALPQGG
                     LPVERLCALAGVSRAGYYRRWQDARPRREETAVRDAIQRLALAHRHYGYRRIAAQLRR
                     EGMAVNRKRVLRLMREDNLLCLI"
     gene            766..1050
                     /locus_tag="VEQ16_03395"
     CDS             766..1050
                     /locus_tag="VEQ16_03395"
                     /inference="COORDINATES: protein motif:HMM:NF025063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HYP62902.1"
                     /translation="MAAHRVRPSMSRVGNPYDNAKAESFMRTLKQEEVDGRAYRDIAA
                     ARPFIGRFIEEVYNRQRLHSALGYQPPAEFETGVLHLAQPVAADRIARVP"
BASE COUNT          287 a          474 c          525 g          265 t
ORIGIN      
        1 tggaccccga aactgagaca aagaaaatgg ggacagttct cgaggaggag aactggatgc
       61 ccaggaaagc ccgaatcttc agtcgtgagt tcaaggtttc cgtgatccgg cggctgcaag
      121 ccggcgagac tgtgagcgcg atcgcgcggg agctgcaggt ccgccggaag gatctgtaca
      181 tttggcaaga gcggttccgc acgggtggag ccgcggctct gcgcgggcgc ggccggccgc
      241 gcaaggtggt catccgggcg ccgccgggtg cgggatcgtt gccggcggcg gcagacttgg
      301 cggccgtcca gcggcggatc tgccgagttg gagcgcaaga tcgggcaaca gcagctggag
      361 ctggattttt ttcagcgagc cttgcggcaa gtcagcggac ggcgccggcc gagcggcggg
      421 tttggcgcca cgccgtctat gcgctcatcg aagcgatgac ggcagcgctg ccgcagggcg
      481 gattaccggt cgagcggcta tgcgcgctgg ccggagtgag ccgcgccggc tactaccgcc
      541 gctggcaaga tgcgaggccg cgccgcgagg aaaccgcggt gcgcgatgcg atccagcggc
      601 tagcactggc gcatcgccat tacggttatc ggcggatcgc tgcacagttg cgccgcgaag
      661 ggatggcggt taaccgcaag cgggtgctgc ggttgatgcg cgaggacaat ctgttatgcc
      721 tcatttgagc ccaggcagta tgcctgtgaa gactacatcg ccaggctggc ggcgcaccgc
      781 gtccggccga gcatgagccg ggtcggcaac ccttacgaca acgccaaggc agagagcttc
      841 atgaggaccc tcaagcagga ggaggtcgac gggcgcgcct accgcgacat cgccgcggcg
      901 cggccgttca tcggccgctt catcgaggag gtctacaacc gccagcgcct gcattcggcc
      961 ctcggttacc aaccccctgc cgagtttgag accggcgtgt tgcacctggc ccagccggtg
     1021 gcggccgacc ggatcgcccg agtgccatga gaaccgtttg taccttcagc gggtcgtcca
     1081 tctgggccca cagagacctc ccgcgctacg ctgcgccagc ctcgtggggg cgctccgctc
     1141 cgcgcgggtc cttcctgtgg actaggtgaa cacgccgctc gtgctgcaat cacctgtccc
     1201 catttatcct gtctcagcac aggggtgcat accaccgcag cgcagggaat tcatcgtata
     1261 agccactgat cctactcgtg ctttcgatgg caaattcgga tgtcggaggc caaaatcgat
     1321 aaatttccct gtattttccc agctcagcag ggaattgggg ggttcagaaa cgccgaagcg
     1381 cggcaggcca cagcacccgc agaaaccgcc gcgccgggat cggagaaacc caaccgcgga
     1441 tctcgctgtc gcaacaatag acgatggggg agatcagacg gtttgcgatt gcagacgctt
     1501 gctctgttta tggtgaatcc ttgcggacca agccgagcgt tgctgcttcg g
//
LOCUS       DASQCV010000226         2275 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1044647, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000226 DASQCV010000000
VERSION     DASQCV010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1044647"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..926)
                     /locus_tag="VEQ16_03400"
     CDS             complement(54..926)
                     /locus_tag="VEQ16_03400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HYP62903.1"
                     /translation="MSSAITRLLGRLRNTEQSVRESIAELVQDAAHEAAPDATLGLNP
                     QERALIANVLRLRDITADDVMVPRPDIIAIRADVTYDQAIDLFRREGHSRLPVYREHL
                     DDVLGMLHLKDVFAYTGPAAEFSVEKILRRPLMVAPQIGVLDLLLQMRQRHTHLALVV
                     DEYGGIDGLVTIEDLVETIVGDIADEHDEIEGPMLTERADGTLDLNARLPVEEFEAKL
                     GPILSEDERDADIETVGGLVFNLAGRVPAKGEIVAHPSGIEFLVLDADARRIRRLRVR
                     RATSPGETEPASEG"
     gene            complement(923..1318)
                     /gene="ybeY"
                     /locus_tag="VEQ16_03405"
     CDS             complement(923..1318)
                     /gene="ybeY"
                     /locus_tag="VEQ16_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HYP62904.1"
                     /translation="MITDRRWRAHVPNVVRLVARALAAAECTANVALTDDRTVKRLNY
                     RDRGKNKPTNVLTYEHPPEILLAFGQVAREAAREGKSIGQHLAHLLVHGALHLHGYEH
                     DHPGEAREMENEEARLLARLGIPNPWKPR"
     gene            complement(1367..2017)
                     /locus_tag="VEQ16_03410"
                     /pseudo
     CDS             complement(1367..2017)
                     /locus_tag="VEQ16_03410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495057.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
     gene            2007..2275
                     /locus_tag="VEQ16_03415"
                     /pseudo
     CDS             2007..2275
                     /locus_tag="VEQ16_03415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010508049.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
BASE COUNT          400 a          757 c          729 g          389 t
ORIGIN      
        1 tgtgccggca ttgctgaatt atccaatgcc ggcgggcgcc gccttgtagg cgcctatccc
       61 tcggacgcgg gttcggtctc gccgggagaa gtagcgcggc ggacgcgcag gcggcggata
      121 cggcgggcat cggcatccaa caccagaaat tcgatgccgg acgggtgggc gacgatctcc
      181 cccttcgccg gcacacgtcc ggccagattg aagacgagcc cgcccaccgt ctcgatatcg
      241 gcgtcgcgct catcctcgga caggataggg ccaagcttgg cctcgaactc ctccactggc
      301 aggcgggcat tgagatcgag cgtgccatcc gcccgctccg tcagcatcgg gccttcgatc
      361 tcgtcatgct catcggcaat atcgccgaca atggtctcga ccagatcctc gatcgtcacg
      421 agaccatcga tgccgccata ttcatccacc accagggcca ggtgcgtatg gcgctggcgc
      481 atctgcagca gcaaatcgag cacgccgatc tgcggcgcca ccatcagcgg gcggcgcaag
      541 attttctcca cagagaattc cgcagccggg ccggtatagg cgaacacatc cttcagatgc
      601 agcatgccca gcacgtcatc cagatgctcg cgataaaccg gcaggcggga atgaccctcg
      661 cggcggaaca gatcgatggc ctggtcgtag gtgacgtccg cgcggatggc gatgatgtcc
      721 gggcgcggca ccatcacgtc gtcggcggta atgtcgcgca ggcgcagcac attggcgatg
      781 agcgcccgct cctgcgggtt gagccccagt gtcgcgtccg gcgccgcctc atgcgccgcg
      841 tcctgcacca gctcggcaat cgattcacgc accgattgct cagtattgcg caggcgcccg
      901 agcaggcggg tgatggccga gctcatcgcg gcttccacgg gttgggaatg ccaaggcggg
      961 ccagcagccg cgcctcctca ttctccatct cccgcgcctc gccgggatgg tcatgctcat
     1021 agccatgcag atgcagcgcc ccatgcacca gcagatgcgc cagatgctgg ccgatggact
     1081 tgccctcgcg cgccgcctca cgcgccacct ggccgaaggc aaggaggatt tccggcgggt
     1141 gctcgtaggt gagcacattg gtcggcttgt tcttgccacg gtcccggtag ttcaagcgct
     1201 tcaccgtgcg gtcatcggtc agcgccacat tggctgtgca ttcggcggcc gccagggcgc
     1261 gggccacaag ccgtaccaca ttgggtacat gcgcccgcca gcgccggtcg gtaatcacca
     1321 attctccgcc cccgaagggg cctgtacttc caggttccat ctttacctag cccatacgtt
     1381 cgcgggcatg ttccttcgca gcggcatagc gttgatcgta ggcttccaca atccgcccga
     1441 cgagcggatg gcgcaccacg tcgctattgg caaagcgcgc cacgccgatg ccctggatgc
     1501 cttccagcgt ttccagcgcg tccgcgaggc ccgagcgcgt attgggcggc aggtcgatct
     1561 gggtgagatc gccggtgacg accatgcgcg tcccctcgcc catgcgggtg aggaacatct
     1621 tcatctgcac cggtgtggtg ttctgggctt catcgaggat gacgaaggca tgagacaatg
     1681 tccggccgcg catgaaggcg agcggggcga tctcgatttc gcccgaagcc atgcgcttgg
     1741 tgagggtctc gccgggcagc atgtcattca gcgcgtcata aagcgggcgc agataggggt
     1801 cgaccttctc cttcatgtcg ccgggcagga agccgaggcg ctcgccggcc tcgagcgcag
     1861 ggcgggagag aatgagacgc tcgacctggc gctcgtgcag caggtgcgcg ccgaaagcag
     1921 cggcgagata ggtcttgccc gtgcccgccg ggccgatgcc aaacaccagg ggatgggtgc
     1981 gcatcaggtc gagataggcg gcttgcgccg gcgagcgctt gggcttcctg cccggcgacc
     2041 tgcgcgaaaa gatcgacccc tacctgcggc cgctctacga cgcgctctac gacatgctgc
     2101 cggccgacca agtggtcaag cgcctgggca ccggcgagat cgagatcgcg ccgctcgcct
     2161 tcatgcgcgg ccgcactctg gcgaatgcgt acatcattct cgacgaggcg cagaacacca
     2221 cgccgaccca gatgaagatg ttcctcaccc gcatgggcga gaacagccgc atggc
//
LOCUS       DASQCV010000227         1524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_381230, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000227 DASQCV010000000
VERSION     DASQCV010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381230"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..753)
                     /locus_tag="VEQ16_03420"
     CDS             complement(<1..753)
                     /locus_tag="VEQ16_03420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62905.1"
                     /translation="MSSEVTASGERDQPAGLLRVSPAVRTLAPLGLYLILSFSFLDNN
                     VNLSEYYYGYSTDSLLFVWFLHWWPFALTHGLNPFLSNYAWFPTGYNFAWATSIPFYA
                     LLMWPVTSLGGPVLSYNILALSMPAFSAWTAYLLARDFTKNFAPALICGLLFGFSMPE
                     MYQAGELNIGSIFFIPLAVLLCARRLQGRLGRKTFVILLSLLLAAQLGMSTEVLAMLC
                     LMGALSWAIFLLFAPAAARPAFWRLAVDIALAA"
     gene            898..1344
                     /locus_tag="VEQ16_03425"
     CDS             898..1344
                     /locus_tag="VEQ16_03425"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF015048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HYP62906.1"
                     /translation="MSAILDMPLEKFQRVFIESSPHYRALRLRAIERGPGYLAYDMPY
                     ADGIVGDPATGEIHEFAITTLIDAACATAVQTRLDKTHRTATLDLRVDFMRKSRKGFD
                     VRCEAEVLRLDASTAIVRAVAHEGEKSDPLAISTGSFAIINMRKAS"
     gene            1344..>1524
                     /locus_tag="VEQ16_03430"
     CDS             1344..>1524
                     /locus_tag="VEQ16_03430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62907.1"
                     /translation="MCAQDDAFAAARGTLLGLPYARMLGFDISLGAEGLRGHLPFAEH
                     LIGNPLVPALHGGVVA"
BASE COUNT          352 a          454 c          478 g          240 t
ORIGIN      
        1 cgcggcgagc gcgatatcca cggccaagcg ccagaaggcg ggccgcgccg cggcgggagc
       61 gaagagcagg aaaatcgccc agctcagcgc gcccatgagg cagagcatgg ccagcacctc
      121 ggtggacatg ccaagctgcg cggcgagaag caggctgagc agaatgacga atgtcttgcg
      181 ccccagccgt ccctgcaggc ggcgcgcgca gagcagcaca gcgagcggaa tgaaaaagat
      241 cgagccgata ttaagctctc cggcctgata catctccggc atggaaaacc cgaacagcag
      301 gccgcagatg agggcgggcg cgaagttttt cgtgaaatcg cgggcgagca aataagctgt
      361 ccaggcactg aaagccggca tcgagagggc gaggatatta taggagagaa ccggcccgcc
      421 gagcgacgtg accggccaca taaggagggc gtaaaacgga atggaggtgg cccaggcgaa
      481 attatagccg gtgggaaacc aggcataatt gctgaggaac ggattgagtc cgtgcgtgag
      541 cgcgaagggc caccaatgca ggaaccagac gaatagaagc gaatctgtgg aatagccgta
      601 ataatattcc gacaagttaa cattgttatc gagaaatgaa aaggacagga tgaggtacag
      661 acccagcggc gccagtgtcc tcaccgccgg ggaaacacgc aacagccctg cgggctgatc
      721 gcgttcgccg gaagctgtca cctcagaact catctgctca tccctgccat ttgtttaagc
      781 acagcagata acgcaagccc aaaatactgg caactgccgg gaccggcatt gacaaggaag
      841 gggcccatgg ggatagccca tcgtcaaatt gcacaaacct ctctgagaca cgggcccatg
      901 agcgcgatcc tcgacatgcc tttggagaaa ttccaacgcg ttttcatcga atcatcgccg
      961 cattatcgcg ccttgcgcct gcgcgccatc gagcgcgggc cgggttatct ggcctatgac
     1021 atgccctatg cggacggcat cgtcggcgat cccgccaccg gcgagatcca tgaattcgcc
     1081 atcaccaccc ttatcgacgc ggcctgcgcc accgccgtgc agacccggct ggacaaaacc
     1141 catcgcaccg ccacgctgga cctgcgcgtc gatttcatgc gcaagagccg caaggggttt
     1201 gacgtgcgct gcgaggcgga agtgctgcgg ctggacgcca gcaccgccat tgtgcgtgcc
     1261 gtagcgcatg agggtgaaaa gagcgacccg ctggccatct ccacaggcag cttcgccatc
     1321 atcaacatgc gcaaggcctc ctgatgtgcg cgcaggatga cgccttcgcc gccgcacgcg
     1381 gcactttgct ggggctgcct tatgcgcgga tgctcgggtt cgatataagc ctgggcgcgg
     1441 agggcttacg cgggcatctg ccctttgccg agcatctcat cggcaatccg ctggtgccgg
     1501 cactgcatgg cggcgtggtc gcgg
//
LOCUS       DASQCV010000228         2266 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1210726, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000228 DASQCV010000000
VERSION     DASQCV010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2266)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1210726"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1250)
                     /gene="lpdA"
                     /locus_tag="VEQ16_03435"
     CDS             complement(<1..1250)
                     /gene="lpdA"
                     /locus_tag="VEQ16_03435"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013641053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HYP62908.1"
                     /translation="MADNFDVIVVGGGPGGYVAAIRAAQLKLKVAVVEAKHLGGICLN
                     WGCIPTKALLRSAEVKHLLDHLPDYGFSAENIQVDLKKIVARSRGVAKQLSGGVSHLL
                     KKNKVTVYDGYGKLRGGGTLSVSLNGKPVALLQAPHIILATGARPRQIPGLEIDGKQI
                     ISYFEAMVPETLPKSLLIIGSGAIGIEFASFYRDLGVEVIVVEMLDRVLPVEDAEISA
                     LARKSFEKQGMKIFTSATVKKAEKGKDSVKVTVEAGGKEQVFEVEKVISAVGIVGNVE
                     NLGLEGTKVQVERTHIVVDGFGRTGEPGVYAIGDVAGPPWLAHKASHEGVVCVEAIAD
                     KNPHPFETGNIPGCTYARPQVASVGLTEQKAKEAGLEVRVGRFPFIGNGKAIALGEPE
                     GLIKTVFDAKTGALLGAHMIGAEVT"
     gene            complement(1330..>2266)
                     /locus_tag="VEQ16_03440"
     CDS             complement(1330..>2266)
                     /locus_tag="VEQ16_03440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HYP62909.1"
                     /translation="SQGERIFASPLARRMAKQAGIDLATVQGSGPNGRIVKADLDKAG
                     AAPAPAPASAPAAAPAAAATAPAVPKPAAPAPQIFGAHKKIPNSSMRKVIAKRLLESK
                     QTVPHFYLTVNVELDALLELRGKLNAASPKDGPGAFKLSVNDLIIKAVAVALKRHPNV
                     NASWTDEAIIQYDDVDISIAVAIPDGLITPIVRKADTLGLAAISNTMKDLGARAKAGK
                     LKPDEYQGGGFSISNLGMFGISEFSAIINPPQACILAVGAGEKRPVVKNDQLAIAAVM
                     SVTLSCDHRVVDGALGAEFLATLKGILEQPLGLML"
BASE COUNT          432 a          827 c          575 g          432 t
ORIGIN      
        1 gtcacctccg cgccgatcat atgcgcgccc agcagggcac ccgtcttggc gtcgaacacg
       61 gtcttgatga gcccctctgg ctcgcccagc gcaatcgcct tgccattgcc gatgaagggg
      121 aaacgcccca cccgcacctc aagtccggcc tccttcgctt tctgctccgt cagccccacg
      181 ctggccacct gcggcctggc ataggtgcag ccggggatat tgccggtctc gaagggatgc
      241 gggttcttgt ccgcaatcgc ttccacgcac accaccccct catggctcgc cttatgcgcg
      301 agccagggcg gcccggccac atcgccgatg gcatacacgc ccggctcgcc ggtgcgcccg
      361 aacccatcca ccacgatatg cgtccgctcc acctgcacct tggtgccctc gagccccaga
      421 ttctcgacat tgccgacaat cccgacggcc gagatcacct tctccacctc gaacacctgc
      481 tccttgccgc cggcctccac cgtcaccttc acggaatcct tgcccttctc ggccttcttc
      541 accgtggcgg aggtgaaaat cttcatcccc tgcttctcga agctcttgcg cgccaacgcc
      601 gaaatctccg catcctcaac gggcagaacc cggtccagca tctccaccac aatcacctcg
      661 acgccgaggt cgcgatagaa actggcaaac tcgatgccga tcgcgcccga gccgataatg
      721 agcagcgatt tcggcagcgt ctccggcacc atcgcctcga agtacgagat gatctgcttc
      781 ccatcgattt ccagccccgg aatctgccgc ggccgcgccc ctgtcgccag aatgatatgc
      841 ggcgcctgca acagcgccac cggcttgccg ttcaggctca cggacaaagt gccgccaccc
      901 cgcagcttgc cgtagccatc ataaacggtc accttgttct tcttcagcag atggctcacc
      961 ccgcccgata gctgcttcgc cacaccgcga gaccgcgcca cgatcttctt caaatccacc
     1021 tggatattct cggccgagaa tccgtaatcc ggcagatggt cgagcagatg cttcacctcc
     1081 gccgagcgca gcagcgcctt ggtcgggatg cagccccagt tcaggcagat gccacccaga
     1141 tgcttcgctt ccaccacggc gaccttcagc ttgagctgcg ccgcgcgaat ggcggccaca
     1201 tagccacccg gtccgccgcc gaccacgatc acgtcgaaat tatcagccat gttttgtttc
     1261 cctttcgccg ctttttgaaa aaagcggcac caaaaacttt tgtgactttg ggtctggggt
     1321 gttgccggtt tacagcatca ggcccagcgg ctgttccagg atccccttca gcgtggccaa
     1381 aaattccgcc cccagcgccc catccacaac gcgatggtcg caggatagcg tcacgctcat
     1441 cacagccgca atcgccagct ggtcattctt caccaccggc cgcttctcac ccgcgcccac
     1501 ggccaatatg caagcctgcg gcggattgat gatcgcggag aattccgaaa tcccgaacat
     1561 cccgagattg gaaatcgaga acccgccgcc ctgatattca tcaggcttca acttgcccgc
     1621 cttcgcccgc gcgcccaaat ctttcatcgt gttggaaatc gccgccagcc ccagcgtatc
     1681 cgccttgcgc acaatcggcg taatcaaccc atccggaatc gcaacggcaa tggaaatatc
     1741 cacgtcgtca tattgaataa tcgcctcatc ggtccagctc gcattcacat tcggatgccg
     1801 cttcagcgcc accgcgacgg ccttgatgat gaggtcattc accgaaagct tgaaggcgcc
     1861 aggcccatcc ttcggcgagg ccgcattcag ttttccgcgc aactcaagta gcgcgtccag
     1921 ctccacattc accgtgagat agaaatgcgg cacggtctgt ttcgattcca gcagacgctt
     1981 cgcaatcacc ttgcgcatgc tggaattcgg aattttcttg tgcgcgccaa aaatctgcgg
     2041 cgcgggcgcg gccggcttgg gcacagccgg ggcagtggcc gcggctgctg gcgccgcagc
     2101 aggcgctgag gctggcgcgg gcgcaggtgc cgcaccagcc ttgtccagat ccgccttcac
     2161 aatccgccca ttcggcccgg agccttgcac cgtcgccaga tcaatccccg cctgcttggc
     2221 catgcgccgc gccagaggcg aagcaaaaat ccgctcgccc tgagac
//
LOCUS       DASQCV010000229         2733 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1211378, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000229 DASQCV010000000
VERSION     DASQCV010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2733
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1211378"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..338)
                     /locus_tag="VEQ16_03445"
     CDS             complement(<1..338)
                     /locus_tag="VEQ16_03445"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HYP62910.1"
                     /translation="MPISRRVLLAASLSLAAAGRARAAGTITVAYAGSMGTLMDQGLN
                     PSFTAATGVDVHGMGQAAMALAHLIIGGTLKPDVFVPVSAGPAKLVRDAGLADKAVPV
                     ASTSIVLAYSP"
     gene            419..793
                     /locus_tag="VEQ16_03450"
     CDS             419..793
                     /locus_tag="VEQ16_03450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009539271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HYP62911.1"
                     /translation="MMQERKFRLRLRLTGTQGVVMGPGRADLLALIAETGSIAAAGRR
                     MGMSYRRAWSLVESMNSSFTAPLVETAKGGAERGGARLTALGQELLAAYRSLEAVIPV
                     AGHEELDRFDAAMEHASTPNLE"
     gene            complement(823..960)
                     /locus_tag="VEQ16_03455"
     CDS             complement(823..960)
                     /locus_tag="VEQ16_03455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62912.1"
                     /translation="MLAHPVILLTVDPVAATVEEFIRAHSLARPARLAGARTSVRLVG
                     L"
     gene            1266..2150
                     /gene="ligD"
                     /locus_tag="VEQ16_03460"
     CDS             1266..2150
                     /gene="ligD"
                     /locus_tag="VEQ16_03460"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HYP62913.1"
                     /translation="MPKPAFHITHPEKQLYPEAGLTKADVAAYVQRAAPLMWPYVKER
                     LVSLVRCPEGVGHGSFFQRHPAAGFGKGWGEQDYESAGGKMERYIYAARQAALLEAVQ
                     MNTLEFHLWGSRRDKPDVPDRVVFDLDPDTELTFAEVKTAALRLRDVLNALGLISQPM
                     LTGGKGIHLVIPLHREHEFAVVKRFCGDVAQRLADDAPERFTATMSKAKRQGRVFIDY
                     FRNEAGATAIAPYSPRARASAGVAWPCRWEELGQYDAADAMTIPRAMQALENAVDPWA
                     GAKPQTLSATVLRAAAQD"
     gene            complement(2147..>2733)
                     /locus_tag="VEQ16_03465"
     CDS             complement(2147..>2733)
                     /locus_tag="VEQ16_03465"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HYP62914.1"
                     /translation="LRLGAKLGPILWQFPPNMGFDPALFQTFMKMLPHDTKAAARMAK
                     HRDTRLKHPDEREILHHHPLRHAVEIRHESFRDPAFIELLLRSNVALVCADTMKWPRL
                     MNITSDFVYCRLHGPRQLYVSGYDDDALAAWANRVQAWVRGETPLDAELVPDAPHGKA
                     MARDVFVYFDNDLKVRAPADAARLAARLGVEPRL"
BASE COUNT          544 a          807 c          871 g          511 t
ORIGIN      
        1 ggggagtagg caagaacaat ggaggtgctg gccaccggca cggccttgtc tgccagcccg
       61 gcatcgcgca ccagcttcgc cggcccggcg gagaccggca cgaacacatc cggcttcagc
      121 gtcccgccga tgatcagatg cgccagcgcc atcgcggcct gacccatccc atgcacatcc
      181 acccctgtgg cggccgtgaa ggagggattc aacccctgat ccatcaaggt ccccatggat
      241 cccgcatagg cgacggtgat cgtcccggcg gcgcgggcac gcccggcggc ggcgagggag
      301 agagacgcgg cgagcagtac acggcgcgag ataggcatgg tgaatcctcc gatatgcttg
      361 tttggatata tcggaatggg gaggttacgg tcaaacccgc ttcgtgattg aatgacccat
      421 gatgcaagag cggaaattca ggctgcgcct gcggttgaca gggacccagg gggtggtgat
      481 gggccccggc cgggccgacc tgctggccct gatcgctgag acaggctcca tagccgctgc
      541 cggacggcgc atgggaatga gctaccgccg cgcctggagc ctggtcgaat ccatgaacag
      601 cagtttcacg gcccctctcg tggaaacggc caagggaggg gcggagcgtg ggggcgcgcg
      661 cctgacggca ctggggcagg aattgcttgc cgcatatcgc agtttggaag ctgtaatacc
      721 ggtggctgga catgaagagc tggaccgctt cgacgcggca atggaacacg cctccacacc
      781 aaacctggag tagcgccaag cacatggcgg cgggataaca agttagaggc caacgaggcg
      841 cacggacgtc cgtgcccccg ccagccttgc gggtcgcgcc aggctgtgag cgcggatgaa
      901 ttcctcaact gtcgcggcga ccggatcgac ggtgaggaga atcaccggat gcgccagcaa
      961 ctccgtaatc gcatgccgat ttcaaccggc agatcgtcta ccgcaccaaa ttattcctgg
     1021 ccggctcgca ggatgccagt ttgagtgaca tgccacgata atcctttatc cggcgatttt
     1081 tctgatgaga gaccagttgc gtctggcttt cacctcacgg atgaggatct ggactcgata
     1141 aaatttgaag ccaaacgcac gaccgatatc gtgcggtccg ttgatcattg cgggattgac
     1201 ctcatttatt ttgacaaacc ctatcatgtg atgctcacaa gacggaaaag ggggttcaac
     1261 gcgagatgcc taaacctgcc ttccatatta cccacccaga aaaacagctt tatcccgagg
     1321 ccgggctgac caaggcggat gtggccgcct atgtgcagcg cgctgcgccg ctgatgtggc
     1381 cttatgtgaa ggagcgtctc gtctcgctgg tgcgctgccc tgaaggggtg ggccatggct
     1441 cctttttcca gcgtcatccc gcggcgggat ttggcaaagg ctggggcgag caagactatg
     1501 aaagcgccgg cggcaagatg gagcgctata tctatgccgc gcgccaggcc gccttgctgg
     1561 aggcggtgca gatgaacacg ctggaatttc atctctgggg ctcgaggcgg gacaagccgg
     1621 atgtaccgga ccgtgtggtg ttcgatctgg acccggatac ggaattaacc tttgccgagg
     1681 tgaaaaccgc cgcgctgcgc ctcagggatg tgctgaacgc gcttggcctc atcagccagc
     1741 ccatgctcac tggcggcaag ggcattcatc tcgtcattcc cctgcatcgt gagcatgaat
     1801 ttgcggttgt caaacggttc tgcggcgatg tggcgcagcg cctggcggat gacgcgcccg
     1861 aacgcttcac ggcgaccatg agcaaagcca agaggcaggg acgcgtcttc atcgattatt
     1921 tccgcaacga ggcaggggcg accgccatcg caccctattc cccgcgcgcc cgtgccagtg
     1981 ccggggtggc ttggccgtgc cgctgggagg agctggggca atatgatgcg gctgacgcga
     2041 tgaccattcc ccgcgccatg caggcgctgg aaaacgcggt tgacccttgg gcaggcgcca
     2101 agccgcagac actctccgcc accgtcctgc gtgccgctgc gcaggactag agccggggct
     2161 ctacaccgag ccgtgcggct agtctggcgg cgtccgccgg tgcccgtact ttgagatcgt
     2221 tgtcgaaata cacaaacacg tcccgcgcca tcgctttgcc gtgtggtgcg tccgggacca
     2281 gttccgcatc aagcggtgtc tcgcctctga cccaggcctg cacgcggttt gcccaggcgg
     2341 cgagggcatc gtcatcataa ccgctgacat agagttgcct ggggccatgc agacggcaat
     2401 agacgaaatc gctggtgata ttcatcaggc gcggccattt catcgtgtcg gcgcagacaa
     2461 gcgccacgtt gcttcgcagc agcagctcaa tgaaggcagg atcgcggaag ctctcatggc
     2521 ggatttcgac cgcatggcgc agaggatggt ggtgaaggat ctccctctcg tccggatgct
     2581 tcagccttgt atcacgatgt ttcgccatcc tggccgcggc ttttgtatcg tgcggaagca
     2641 ttttcatgaa agtctggaac aatgctggat caaagcccat gttgggcgga aattgccaca
     2701 ggatcggtcc aagtttggcg ccgagcctga gaa
//
LOCUS       DASQCV010000230         2120 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_382859, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000230 DASQCV010000000
VERSION     DASQCV010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382859"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..793
                     /locus_tag="VEQ16_03470"
     CDS             <1..793
                     /locus_tag="VEQ16_03470"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HYP62915.1"
                     /translation="AAISMQMQKLETMLGKTLLRRGRGEGIELTTHGAYLLERAREML
                     ALNDNIWSTFQTPDVSGLVRIGTPDDYALQFLPNALRRFAESHPAVEVEVVCLPSVEL
                     AERMKAGRLDLALISEGHEPRHWETELLISGPLVWVTSRRFSPHRLDPLPLALAEHDC
                     SWRRATERALKASGRAYRIAYVSSSAIGTMVPVVAGLAVTCAIASPLPEGVRVLTPQE
                     EDLPELPEFSVMMMKAKNPPQPATDRLAEHIREAVRLEGAKAGWR"
     gene            complement(898..1584)
                     /locus_tag="VEQ16_03475"
     CDS             complement(898..1584)
                     /locus_tag="VEQ16_03475"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HYP62916.1"
                     /translation="MQRIYAALLLLAPLFIAAPACAGTDLTIAATGQASVPPDEATAS
                     LNVQAQENTAAKAQAAVNAAMAKALTEARAVPGVTATTGSYSTYTVTPDNNGPQKFVA
                     QQSLQLVQPAAGGAPSDAFSNLLGSLQQQGLLLNSLSGDLSAAGQREAQKEAIQDALT
                     QIQAQAASIAESLHQHVGKTDSLDVNAAINPGPRPMMMAMAREAAPPQSAPENVQVTA
                     NVTAKIELNP"
     gene            complement(1641..>2120)
                     /locus_tag="VEQ16_03480"
     CDS             complement(1641..>2120)
                     /locus_tag="VEQ16_03480"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070567 - cytidylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IspD/TarI family cytidylyltransferase"
                     /protein_id="HYP62917.1"
                     /translation="AEKLQPVLFGGAQRQDSVRLGLEGIAGLKPAHVLIHDAVRPFIT
                     VPTITAVLDALTRSPAALAGVPLADTLKRVEDGTVTGTVDRGGLWRAQTPQGFRYADI
                     LKAHRYAVQSAPGVEFTDDAMTAEHAGLRVEMVMGSEDNFKITTAADLARAEFLLNF"
BASE COUNT          330 a          676 c          741 g          373 t
ORIGIN      
        1 ggctgcgatt tccatgcaga tgcagaagct ggagacgatg ctgggcaaga cgctgctgcg
       61 gcgcgggcgc ggcgagggca tcgagttgac cacgcatggt gcctacctgc tggagcgggc
      121 tcgggagatg ctggcgctca acgacaatat ctggtccacc ttccagacgc ccgatgtgtc
      181 cgggctggtg cgcatcggca cgccagatga ttacgcgctg caattcctcc ccaacgcgct
      241 gcggcgtttt gccgagagcc atccggcggt ggaggtggag gtggtgtgcc tgccctcggt
      301 ggagctggcg gagcggatga aggcgggacg gctggacctg gcgctgatat ccgagggcca
      361 tgagccgcgc cattgggaga cggagctgct catctccggg ccgctggtat gggtgacgtc
      421 gcgccgattc tcgccgcacc ggctggaccc gctgccgctg gccctggccg agcatgattg
      481 ctcctggcgc cgcgccaccg agcgggcgct gaaagcgtcg gggcgggcct atcggattgc
      541 ctatgtctcc agcagcgcga tcggcaccat ggtgccggtg gtggcggggc tggcggtgac
      601 ctgcgccatc gcctcgccct tgccggaggg ggtgcgggtg cttacgccgc aggaggagga
      661 tttgcccgaa ttgccggaat tttcggtgat gatgatgaag gccaagaacc cgccccagcc
      721 ggcgacggac cggctggccg agcatatacg cgaggcggta cggctggagg gggccaaggc
      781 aggctggcgc taggcttccc ctggcgtcac agccccagcc ccaactaatg ggggtctggg
      841 gcctcaggcc tcagcgggcc cagggcagag ccctggtctg tctttcctgg cctgtcttca
      901 aggattcagt tcgatcttgg ccgttacgtt ggcggtgacc tgcacatttt ccggcgcgga
      961 ttgcggcggg gcggcctcgc gcgccatcgc catcatcatc ggccgcggcc ctggattgat
     1021 ggcggcattc acgtcaagcg aatcggtctt gcccacatgc tggtgcaggc tctctgcaat
     1081 ggacgccgcc tgcgcctgga tctgcgtcag cgcatcctga atggcttcct tctgcgcctc
     1141 gcgctggcca gcggcggaca ggtcgccgga gagcgaattc agcaaaagcc cctgctgctg
     1201 caacgagcca agaagattcg agaacgcatc ggacggggcg ccgcccgccg ccggctgcac
     1261 cagctgcagg ctttgctggg cgacgaattt ctgcggcccg ttattgtccg gcgtcacggt
     1321 gtaggtgctg tagctgccgg tggtggccgt aacacccggc accgccctgg cttcggtgag
     1381 cgccttcgcc atcgccgcat tcaccgccgc ctgggccttg gcggctgtgt tctcctgcgc
     1441 ctgcacattc agcgaggccg tcgcctcatc cggcggcacg ctggcctggc cggtggcggc
     1501 gatggtgagg tccgtccccg cgcaggcggg ggcagcgatg aaaagcgggg cgaggagcag
     1561 aagagcggca tagatacgtt gcatggatga tctccttggc atgtccggat ccgcgccgtc
     1621 gtcgtggcaa gaccaggtgc ctagaagtta aggagaaact ccgcgcgtgc cagatcggcc
     1681 gcggtggtga ttttgaaatt atcctccgag cccatcacca tctccacccg cagaccagca
     1741 tgttcggcgg tcatagcgtc gtcggtgaat tccacgcccg gcgcgctctg cacggcataa
     1801 cggtgcgcct tgaggatgtc ggcataacga aaaccctgcg gggtctgcgc gcgccacaat
     1861 ccgccgcggt ccaccgtgcc ggttacggtg ccgtcctcca cgcgcttcag cgtgtcggcc
     1921 agcggcaccc cggcgagcgc ggcggggctg cgagtgagcg cgtccagcac cgcagtgatg
     1981 gtgggcacgg tgatgaaggg acgcacggcg tcatgaatga gcacatgggc tggcttcagc
     2041 ccggcaatgc cctccagccc gaggcgcacg gaatcctgcc gctgcgcgcc gccaaacaaa
     2101 accggctgca gcttttccgc
//
LOCUS       DASQCV010000231         3438 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2538612, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000231 DASQCV010000000
VERSION     DASQCV010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3438)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3438)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3438
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2538612"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..1416
                     /locus_tag="VEQ16_03485"
     CDS             166..1416
                     /locus_tag="VEQ16_03485"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase dimerization domain-containing
                     protein"
                     /protein_id="HYP62918.1"
                     /translation="MANPELSPQGLRVAEMIQSGAGQEKPIERAPGIYESRGIGNSYL
                     ITTPEGDVLVNAGALGDARRGKTLFASISSNPVRYIVLTQSHANQYGGLEVYKTPENT
                     VIAHRLYPEERAYSEALSPHYRRGSRRIFSNIAGRTENVVPTREVPPDLLIGDEGHNF
                     ELGGKRFEIIHTPGGETRSAVIVWLPDQKIAIVGNLFGPVFGNHPNLNTLRGDKPRWA
                     LQFIESVKKLRALKPELVLTGHEAISSTDHIEREVTRIIDAVQYVHDRTVEGMNEGKD
                     LRTLMRDIRTPPELTLTEEYGKIAWNVRATWHEYTGWFDPSRGTTELYGVPPSSVAPA
                     IAELAGGADRLATRAQKFVDEEKPLEALHLLDIALAATPDSAPAREVKRAALTLLLAQ
                     SGGKNLWERMWIAAAIRNLDAPPT"
     gene            1452..2189
                     /locus_tag="VEQ16_03490"
     CDS             1452..2189
                     /locus_tag="VEQ16_03490"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYP62919.1"
                     /translation="MDYAFLHGGGQGGWVWTEMIEALALQSGGTLVRALALDVPGCGA
                     KRGQDTSQTGVDDIAAELLSDIEAAGLRDVVLVGHSQAGSVMPHLLTARPELFRRAIY
                     ISCSIPLPGQTVVGMVGNSRHGENPDEIGWPLDPRTSTMEERYRIMFCNDMDDDTAQS
                     FMGKLGADAWPMSSYAHTDWRHEQLGAVPSSYVACLRDGILPMPWQEIFARRFHCGRT
                     VHIDAGHQVMNTRPHGLAEIVRHDAGG"
     gene            complement(2198..2896)
                     /locus_tag="VEQ16_03495"
     CDS             complement(2198..2896)
                     /locus_tag="VEQ16_03495"
                     /inference="COORDINATES: protein motif:HMM:NF025605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP62920.1"
                     /translation="MVPDRFIIWGAGLEGKRIQQGAKIAAVRAGRPTREQQAQRHEEL
                     LSVALDIFLERGFEQTTMEEIATCVGMSKRTVYAYYEDKPALFKAAVRRAIELYTLPK
                     EAIAALVTDDLEETLVAIGRQRVANINTPVATKLQRILGAQSFRFPELFNESFVRGAG
                     PVIEVLCDLFARFGASGEIDVVDPQRAATGFLSLVVSGPARVIVSGNVLDEAEIEARI
                     RFAVGLFLNGVRRR"
     gene            3023..>3438
                     /locus_tag="VEQ16_03500"
     CDS             3023..>3438
                     /locus_tag="VEQ16_03500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62921.1"
                     /translation="MGNAADRLTRLVESDSRYDIPHEEVRAAQIEAMNERFQERREAI
                     KLVGHRAKEANLDEVRSFEDMVQLLLPHTAYKSYPESFLVGEKWDRLGKWLDTVSTYR
                     VPPQDPATINGIDDWIEKLEQSGHYVSCSSGTTGKCS"
BASE COUNT          713 a         1138 c         1016 g          571 t
ORIGIN      
        1 tctgagttct tgcccctcac ataagaaagc ggggacgccg ctgcaacgcg cctgtgcatc
       61 gcgcgcgggc cataccatgg agggctggcc atatcagcgc ctgccatggg ttgcaccggg
      121 gccgtgcttt gcctgagatg ccggaaatgg aaggagaccg gcatcatggc aaatccagaa
      181 ctttccccgc aggggctgcg cgtggcggag atgatccaat ccggcgcggg ccaggaaaaa
      241 cccatcgagc gcgcgcctgg aatctatgaa agccgcggca tcggcaattc ctacctcatc
      301 accacgccgg agggcgacgt gctggtcaat gccggcgcgc tcggcgacgc cagacgaggt
      361 aagacattgt ttgcaagcat ttcctcaaac ccggtccgct atatcgtgct cacccaaagc
      421 cacgccaacc aatatggcgg gctggaagtc tacaaaacgc cggaaaacac cgtcatcgcc
      481 caccgcctct accccgagga gcgcgcctat agcgaagcgc tgagcccgca ttaccgccgc
      541 ggttcacggc gcatcttcag caacatcgcc ggaagaaccg agaatgtggt accgacgcgg
      601 gaagtgccgc cggacctgct catcggcgac gagggccaca atttcgagct gggcgggaaa
      661 cgcttcgaga tcatacatac ccccggcggc gagacgcgtt ccgccgtcat cgtctggcta
      721 ccggaccaga aaatcgccat tgtcggcaat ctgttcggcc ccgtcttcgg caaccacccc
      781 aaccttaaca cgctgcgcgg cgacaagccg cgctgggcgc ttcaattcat cgagtccgtg
      841 aaaaaactcc gcgccctgaa gcccgaactc gtgctgacgg gccacgaagc catcagcagt
      901 actgaccaca ttgagcgcga agtcacgcgc atcatcgacg ccgtgcaata tgtgcatgac
      961 cgcacggtgg aggggatgaa tgaaggcaag gatctgcgca cactgatgcg cgacatccgc
     1021 accccgcccg agctcaccct caccgaggaa tatggcaaga tcgcctggaa tgtgcgggca
     1081 acctggcatg agtatacggg ctggttcgac ccgtcacgcg gcaccaccga gctttacggc
     1141 gtgccgccct ccagcgtggc gccagccatc gccgagctag ccggcggcgc ggaccggctg
     1201 gccacgcgcg cgcaaaaatt cgtggatgag gagaagccac tggaagcgct gcatctgctg
     1261 gacatcgccc tggccgccac accggactcc gcgcccgcgc gagaggtgaa gcgcgccgcc
     1321 ctgacgctgc ttctggccca gagcggcggc aagaatttgt gggagcgcat gtggatcgcc
     1381 gccgcaatcc gcaatctgga cgcgccacca acctaattct aggctatgcc caaaaacggg
     1441 agaaaagcgc aatggattac gcattcctgc atggcggcgg ccaaggtggc tgggtctgga
     1501 ccgagatgat cgaggcactg gcgttgcaga gcggcggcac attggtccgg gccctggcgc
     1561 tggatgtacc gggctgcgga gccaagcgcg ggcaggatac gagccaaacc ggcgtggacg
     1621 atattgccgc tgaattgctc tcggacatcg aagcggccgg actgcgcgac gttgtgctcg
     1681 tcggccattc ccaggccggc tcggtgatgc cgcatctgct cacggcgcgg ccggagctgt
     1741 tccggcgcgc catctatatt tcctgctcca taccgctgcc cggccaaact gtcgtgggga
     1801 tggtgggcaa cagccggcat ggcgaaaacc ccgacgagat cggctggccg ctcgacccgc
     1861 ggacatcgac gatggaggag cgctacagga tcatgttctg caacgatatg gatgacgata
     1921 cggcgcaatc cttcatgggt aagctgggcg cggatgcctg gccgatgtcc agctacgctc
     1981 atacggattg gcgccatgag cagttgggcg cggtgccctc cagctatgtg gcctgcctgc
     2041 gcgatggcat tttacccatg ccctggcagg agattttcgc gcgccgcttc cattgcgggc
     2101 gcaccgtgca tatcgatgct gggcatcagg tgatgaatac gcggccgcac gggctggcgg
     2161 agattgtgcg gcatgacgcc ggggggtaaa cgcctctcta cctccgccgc accccattca
     2221 aaaacaaccc caccgcaaac cgtatccgcg cctcaatctc cgcctcatcc agcacattgc
     2281 ccgagacgat gacacgtgcc ggcccgctca ccaccaggct caaaaacccc gtcgccgcac
     2341 gctgagggtc caccacgtca atctcacccg aggccccgaa ccgcgcgaac aaatcgcaca
     2401 gcacctcaat caccggcccc gctccacgta caaacgattc attgaacagc tcaggaaatc
     2461 ggaaagactg cgcccccaga atacgctgca gcttggtcgc caccggcgtg ttgatgttgg
     2521 cgacacgctg cctgccaatc gccaccagcg tctcttccag atcatccgtc accagcgccg
     2581 caatggcctc cttgggcaga gtataaagct cgatcgcccg ccgcaccgcc gctttgaaca
     2641 gagctggctt gtcctcgtaa taggcataga ccgtgcgctt ggacatgccc acgcaggtgg
     2701 caatctcctc catggtcgtc tgctcgaagc cgcgctccag gaaaatgtcg agcgccacag
     2761 acagcagctc ctcatggcgc tgcgcctgct gctcacgcgt cggccgcccg gcccttaccg
     2821 cggcaatttt tgctccctgc tgaatcctct tgccctccag tcctgcgccc catataatga
     2881 aacggtccgg taccaccaag gggtgccggt gttccgggag gcaactcttc aacccaggcc
     2941 gcaagaggcc ttggttaaca tgaagttgtg ctcctccgtt ctaagtaaat gaccgtggcc
     3001 cggtcgagaa ggagaaagtt atatgggaaa cgccgccgac cggctgaccc ggctcgttga
     3061 gtcggatagc cgctacgata tcccgcacga agaggtgcgc gccgcccaga tcgaggcgat
     3121 gaatgaacgc ttccaggagc gccgtgaggc catcaagctg gtcggccacc gcgccaagga
     3181 ggccaatctc gacgaagttc gcagcttcga ggacatggtg cagctgctgc tcccgcacac
     3241 cgcctataag agctacccgg aatccttcct ggtcggcgag aaatgggacc ggcttggcaa
     3301 atggctggac accgtctcca cctaccgcgt gccgccgcag gaccccgcga ccatcaacgg
     3361 catcgatgac tggatcgaga agctggaaca aagcggccat tacgtctcct gctccagcgg
     3421 caccaccggc aagtgctc
//
LOCUS       DASQCV010000232         1652 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2372450, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000232 DASQCV010000000
VERSION     DASQCV010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2372450"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            245..523
                     /locus_tag="VEQ16_03505"
     CDS             245..523
                     /locus_tag="VEQ16_03505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003511982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal/formaldehyde-sensitive transcriptional
                     repressor"
                     /protein_id="HYP62922.1"
                     /translation="MTHTVREKKKLLARVRRIKGQVEAMERALEGEAGCETVLHLIAA
                     ARGAMAGLMAEVVEEHVRTHLVDEAAHPGVLKEDAVEQLLDVVRSYLK"
     gene            531..1505
                     /gene="dmeF"
                     /locus_tag="VEQ16_03510"
     CDS             531..1505
                     /gene="dmeF"
                     /locus_tag="VEQ16_03510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012202396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family Co(II)/Ni(II) efflux transporter
                     DmeF"
                     /protein_id="HYP62923.1"
                     /translation="MSGVTGQQHHFLDAAHERSEARTWHVVWLCAAMMVLEIAGGLWF
                     GSIALVADGLHMSTHAGALLLAALAYSFARKHADDPRFSFGTGKLGDLAGFTSAIILA
                     MISLLIAYEAVSRFFTPRPIDFAAAIPIAVLGLGVNLASAWLLGGGGDGHHHHHHGHA
                     HDYDDDDDHDHDHDHDHDHGHDHGTGRDNNMRAALVHVMADAAVSVLVILGLVLAKLF
                     GWLWLDPVVGLVGAGVIASWALGLIRDTGAILLDMTPDHGMAQKLRAAVEEEGDELAD
                     FHLWRLGPGHLGAILCVSTSRGHNAAYYRDKLAHFSALSHLTVEVHHG"
BASE COUNT          285 a          467 c          546 g          354 t
ORIGIN      
        1 ggcacggtga ttgcgcgtgc ttcgctgata cgccaataca aaagccgttt cattttctct
       61 tctggcaaca tggtcaaaat taagacaaca cggcgttgac atcgtggggg gtcgcaggtt
      121 caatccctgt cgtgtcccgc accccttctc ccaagaacgg tccagcgtcc cgcttccagc
      181 ttttgatctg caatggtgtg ctcgcctcat tgtataggga ggggggctat tctatatctt
      241 gcctatgacc cataccgtcc gcgaaaagaa aaagcttttg gcgcgcgtgc gccgtataaa
      301 aggccaggtg gaggccatgg agcgcgcgct ggaaggtgag gcggggtgtg agacggtgtt
      361 gcatctcatt gccgccgccc gtggcgccat ggccgggctg atggccgaag tggtcgagga
      421 gcatgtgcgc acgcatctag tcgatgaggc ggcccatccg ggcgtgctga aagaggatgc
      481 ggtggaacaa ttgctggacg tggtccgcag ctatctgaag tgaggggcct atgagcggcg
      541 ttacggggca acagcatcat tttctggacg cggcgcatga gcgcagcgag gcgcgcacct
      601 ggcacgtggt gtggctgtgc gcggcaatga tggtgctgga gattgccggc gggctgtggt
      661 tcggctccat cgccctggtg gcggacgggc tgcatatgag cacccatgcc ggcgcgcttt
      721 tgctggcggc gctggcctat agttttgccc ggaaacatgc ggacgatccg cgtttctcct
      781 tcggcaccgg caaattgggc gatctcgccg gcttcaccag cgctatcatc ctcgccatga
      841 tttcgctcct catcgcctat gaagcggtga gccgtttctt cacgcctcgg ccaattgatt
      901 ttgccgcggc cattcccatc gccgtgctgg gtctcggcgt gaatctcgcc tcggcctggc
      961 tgctgggcgg cggcggggac gggcatcatc accatcatca cggccatgcg cacgattatg
     1021 acgatgatga tgaccacgac catgaccatg accatgacca cgatcacggc catgatcacg
     1081 gcacggggcg cgacaataat atgcgcgctg ccctggtgca tgtgatggcg gatgctgctg
     1141 tttctgtcct ggtgattctc gggctcgtcc tggcaaaact ttttggctgg ctatggctgg
     1201 acccggtggt ggggctcgtg ggggcagggg tgatcgccag ctgggcgctg gggttgatcc
     1261 gcgataccgg cgccattctg ctcgacatga cccccgacca tggcatggcg cagaagctgc
     1321 gcgccgccgt cgaggaagaa ggcgacgagc tggccgattt ccatctctgg cgattgggcc
     1381 ctggccatct aggcgccatt ctctgtgtga gcaccagccg gggccataat gccgcctatt
     1441 accgcgacaa gctggcccat ttctctgcgc tgtcccatct gaccgtggag gtgcaccatg
     1501 gctgagggac ggcgaaagcc gctcatcgga tgtctgcgca agatagaaat gtcactcggc
     1561 gtgcaaagta gaaatgtcac tcagcgggcc ggggaggggg catttcgagg ttgttggtgt
     1621 ggcggcgccg gtccggatcg agccggcgtt tg
//
LOCUS       DASQCV010000233         2675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3201766, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000233 DASQCV010000000
VERSION     DASQCV010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2675
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3201766"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..535)
                     /gene="pgsA"
                     /locus_tag="VEQ16_03515"
     CDS             complement(<1..535)
                     /gene="pgsA"
                     /locus_tag="VEQ16_03515"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003623001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HYP62924.1"
                     /translation="MLTDLPNILTLSRIAAIPVLVLLVSFGAPWSAFCAALLFALAAI
                     TDYFDGYIARERQLLSDFGRMLDPIADKLLVGATLMALVGFGHLPGLGIYPAIVIMLR
                     EILVSGLREYLAGIRVGLPVTKLAKWKTGVQMVALGLLLLGHQGAHFMGLGFLPMDAA
                     GAALLWIAATLTLITGWD"
     gene            complement(592..1290)
                     /locus_tag="VEQ16_03520"
     CDS             complement(592..1290)
                     /locus_tag="VEQ16_03520"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HYP62925.1"
                     /translation="MTGYFRVRPSFLLLLLAVLGVLLLAAGVVAGPHLITLVMDETHR
                     PRDAGPVGLALFAAMFFLAALAGVIPGGPLGLAAGAIFGLEAGFTASAIGSMAGAAAA
                     FGLSRSWLRPSIATLLARHNKLARLDTAFGEQDWRLVALLRVSPVMPFSLTSYALGLS
                     GIGFPAYLLGTLGSLPTLSAYVALGALGAYGANLPSGTGRAIHLGLAVLGGAASLLLI
                     LYLGRMLGRVLRPA"
     gene            complement(1262..2008)
                     /locus_tag="VEQ16_03525"
     CDS             complement(1262..2008)
                     /locus_tag="VEQ16_03525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007397136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYP62926.1"
                     /translation="MLNGQRVAVILPAYNAARTLERTHAEIPRDIVDDVILTDDASRD
                     ETASLSRELGIHTLVHDKNRGYGGNQKTCYAEALTRGADIVVMLHPDYQYSPRLVTAM
                     AAMIASGHYDVVLGSRILGTGALKGGMPLYKYVANRALTFIENLLLGLKLSEYHTGYR
                     AWSAAALRRLDLSQCSNDFVFDNQMLALAAWAGLSIGEISCPTKYFAEASSINFSRSV
                     TYGLGVLETGAKYRLARWGLQHDGLFPRAS"
     gene            complement(2008..2643)
                     /locus_tag="VEQ16_03530"
     CDS             complement(2008..2643)
                     /locus_tag="VEQ16_03530"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HYP62927.1"
                     /translation="MDVADFDALRAAPVATDPFPHILLPRFIRAEALPEVFAALPPMK
                     GRGSFPIEAVKLGRAAQDAIAALQGEEFRTIVAAKFGLDLADAPSMVTLRGNSGPQDG
                     QIHTDSSAKRVTILLYLNPGGAESWAKQEGCLRLLRGPDDLENYAAEVPPVDGTLLIF
                     PNTPASWHGHKTHEGQRYVVQMNYMTTSAKAKAEMRRHHLSAFIKRLTRAA"
BASE COUNT          530 a          849 c          889 g          407 t
ORIGIN      
        1 aatcccaacc tgttatcaat gtcagcgtgg cggcgatcca cagcagggcc gcgcccgccg
       61 cgtccatagg caggaagccg agccccatga aatgcgcccc ctgatgcccg agcagcagca
      121 gccccagcgc caccatctgc acgcccgtct tccatttggc gagcttggtt accggcaagc
      181 cgacgcggat gccggccaga tattcgcgca ggcccgagac gaggatttcg cgcagcatga
      241 tgacgatggc gggataaatg ccgaggcccg gcagatggcc gaacccgacc agcgccatga
      301 gggtggcgcc aacgagcagc ttgtcggcaa tcgggtccag catgcggccg aaatcggaaa
      361 gaagctggcg ctcgcgggcg atatagccat cgaaataatc ggtgatggcg gcgagggcga
      421 acagcagcgc cgcgcagaag gccgaccagg gcgcgccaaa ggacaccagc agcaccagaa
      481 ccggaatggc ggcaatgcgc gacaaggtga gaatattggg caggtcggtc agcattgccg
      541 caacagtaac ttgttttcct ctggcgcgaa accgggcccc gtcttgcttt ctcaggccgg
      601 ccgcagcacc cgcccgagca tccggccgag ataaagaatg agcagcaggc tggccgcgcc
      661 gccgagcacg gcgaggccga gatggatcgc ccgccccgtt cccgatggca ggttggcgcc
      721 gtaagccccg agtgcgccca aggcgacata agctgacaga gtgggcagcg agcccagcgt
      781 tccgagcaga taggcgggaa agccgatgcc ggagaggccg agcgcgtagg aggtgaggga
      841 gaagggcatc accggcgaga cgcgcagcag cgccaccagc cgccaatcct gctcgccaaa
      901 ggcggtatcg agccgggcca gcttgttatg ccgggccaac agcgtggcga tggaggggcg
      961 cagccaggag cggctgagcc cgaaggccgc cgccgcgccg gccatgctgc cgatggcgga
     1021 ggcagtgaat cccgcttcca gcccgaaaat cgctccggcg gcgaggccca gcggtccgcc
     1081 cgggatcacc ccggccaaag ccgccaggaa aaacatggcg gcaaacaacg ccaatcccac
     1141 cgggccggca tcgcgcggcc tgtgcgtttc atccatcacc agcgtgatca gatgcggccc
     1201 cgccacgacg cccgccgcca ggagcaacac ccccagcacg gccagcagga ggagcagaaa
     1261 actaggacgc acgcggaaat agcccgtcat gctgcaggcc ccagcgcgcc agcctgtatt
     1321 tcgcgcccgt ctccagcacg cccagcccgt aggtgaccga gcgcgaaaaa ttgatcgagg
     1381 aggcctcggc aaaatatttg gtcgggcagg aaatctcgcc gatcgaaagt cccgcccagg
     1441 ccgcgagcgc cagcatctgg ttgtcgaaca cgaaatcatt ggagcattgc gacagatcga
     1501 gccgccgcag cgccgccgcc gaccaggcgc ggtagccagt gtgatattcc gagagtttca
     1561 gtccgagcag cagattctcg atgaaggtga gggcgcggtt ggcgacatat ttatagagcg
     1621 gcataccgcc cttcagcgcg ccggtgccca ggatgcgcga gcccagcacc acatcgtaat
     1681 ggccggaggc gatcatcgct gccatggctg tcaccagcct gggtgaatat tggtagtccg
     1741 ggtgcagcat caccacgata tcggcgccgc gcgtcagcgc ctcggcgtag caggtcttct
     1801 ggttgccgcc atagccgcgg tttttgtcat gcacgagcgt atggatgccg agctcgcgcg
     1861 acaaggacgc cgtctcgtcg cggctggcgt catcggtgag gatgacgtca tcgacaatgt
     1921 cgcgcggaat ttcggcgtgg gtccgttcca gcgtgcgagc ggcgttatag gccggcagga
     1981 tgacggcgac gcgctgtccg ttgagcatta cgccgccctg gtcaggcgct tgatgaaagc
     2041 ggagagatgg tggcggcgca tttcggcttt cgccttggcg ctggtcgtca tgtaattcat
     2101 ctgcaccacg tagcgttgcc cctcatgcgt cttatgtcca tgccagctcg ccggcgtgtt
     2161 tgggaagatg agcagtgtgc catccacggg cggcacctcg gcggcataat tctccagatc
     2221 atccggtccg cgcaacagcc gcaggcagcc ttcctgcttg gcccagctct cggcaccccc
     2281 cgggttcaga taaagcagga tggtgacgcg cttggcgctg gaatcggtgt ggatctgccc
     2341 gtcctgcggc ccggaattgc cgcgcaaggt caccatgctt ggcgcatcgg cgaggtccag
     2401 cccgaatttt gccgcgacga tggtacggaa ttcttcgccc tgtaacgcgg cgatggcgtc
     2461 ctgcgcggcc cgccccagtt tcaccgcctc gatgggaaag gagccgcgcc ccttcatcgg
     2521 cggcagcgcc gcgaacactt cggggagcgc ctcggcccgg atgaagcggg ggagtagaat
     2581 atgcgggaac gggtcggtgg cgaccggggc cgcacgcaag gcatcgaagt cggcaacatc
     2641 cataggttgt attccggggg tttggcgaga gatca
//
LOCUS       DASQCV010000234         2546 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3202357, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000234 DASQCV010000000
VERSION     DASQCV010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2546
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3202357"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..650
                     /locus_tag="VEQ16_03535"
     CDS             <1..650
                     /locus_tag="VEQ16_03535"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HYP62928.1"
                     /translation="ATLNAMNCDLLVVRHNRSGAPALLAEKVGAAVINAGDGTHEHPT
                     QALLDALTMRRHKGRISGLTVAICGDIAHSRVARSNILLLTMMGNFVRLIGPPTLLPG
                     SIGINGVEIFHSMEEGLKGADIVMALRLQKERMSGGLVPSSREFFAYYGLDRKKLAYA
                     KPDALVMHPGPMNRGVEIDSDIADDDARSLIKEQVEMGVAVRMAVLDTLARSSNI"
     gene            647..1921
                     /locus_tag="VEQ16_03540"
     CDS             647..1921
                     /locus_tag="VEQ16_03540"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006558570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HYP62929.1"
                     /translation="MSILFRKICYLDESAQNLVEGDLLVRDGLIADFGQNLGRPDGAE
                     IIEAEGAVLCPGLVDMRASLGEPGFEYRETITSAAEAAAAGGITAIAVLPDSAPPIDD
                     PALVHLIIARGQETGSVSLLPYAAATRGLNGEELAEYGLLRAAGAVAFTDGGKTIASS
                     RLMRLALSYASGFGACIVQHPEDVELAKGGAATAGARATWMGLPGIPAAAEAICVARD
                     IRLAELTGGAVHFAHVTTGEALALIRTAKDKGLRVTCDTAPPYFDLNETAIGDYRTYA
                     KLSPPLRAEEDRQAVLAALRDGTIDAIASDHQPRDADDKRVPFADAAPGGAGLATLLG
                     ITLAHVQNGGLTLPQALALLTKKPAAWLGIEAGIIAKGRPADLCLFHPERSWQVQAGK
                     LPGKAQNTPFDGRALEGLVLGTWKDGKRAFAR"
     gene            1918..2514
                     /gene="plsY"
                     /locus_tag="VEQ16_03545"
     CDS             1918..2514
                     /gene="plsY"
                     /locus_tag="VEQ16_03545"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HYP62930.1"
                     /translation="MIMMYLLIAIFAYLLGSIPFGLLLTQFAGLGDIRAIGSGNIGAT
                     NVLRTGRKGLAAATLLLDGGKGWLAVAWIEAYNHGGVALAALCVVLGHLFPLWLWFKG
                     GKGVATGLGVFFALAWPIGAIACAAWLLTALLLRFSSLSALVAYASAPVSAWFVTHDW
                     KMAVLTALIAALVYWKHSPNIKRLLDGTEPRIGKKAAG"
BASE COUNT          413 a          845 c          823 g          465 t
ORIGIN      
        1 cggcgacgct gaatgcgatg aattgcgacc tgctggtggt gcgccataac cgttccggcg
       61 cccctgccct gctggcggaa aaggtgggtg ccgccgtcat caatgccggg gacggcacgc
      121 atgagcaccc gacccaggcg ctgctggacg ctttgaccat gcgccgtcac aaggggcgca
      181 tttccggcct caccgtggcc atttgcggcg atatcgccca ttcccgcgtt gcccggagca
      241 atattctgct cctcaccatg atggggaatt tcgttcgcct catcgggcca ccgactctgc
      301 tgcccggcag catcggcatc aatggcgtgg aaattttcca ttccatggag gaggggctga
      361 agggtgccga catcgtcatg gcgctgcggc tgcaaaagga gcgcatgtcc ggcgggctcg
      421 tgccctcgtc ccgcgaattc ttcgcctatt acgggctaga ccggaagaag ctggcctacg
      481 ccaagccgga cgcgctggtg atgcatcccg gccccatgaa ccggggcgtg gaaatcgaca
      541 gcgacattgc cgatgacgat gcccgctcgc tcatcaagga gcaggtggag atgggggttg
      601 ccgtgcgcat ggcggtgctg gatacgctcg cgcggagcag caatatatga gcatcttatt
      661 ccgtaaaatc tgctatctcg acgagtcggc tcagaatctg gttgaaggtg acctactggt
      721 ccgggacggc ctcatcgccg attttggcca aaatctcggc cggccagacg gtgccgaaat
      781 tatcgaggca gagggcgcgg tgctgtgccc gggtctcgtc gatatgcgcg cctccctcgg
      841 cgagccaggc tttgaatacc gcgagaccat cacctccgcc gccgaggccg ccgccgccgg
      901 gggcatcacc gccatcgcag tgctgccgga ttccgcgccg cccatcgacg acccggcgct
      961 tgtgcatctc attatcgccc gcggccagga aacgggcagc gtctcgctcc tgccttatgc
     1021 cgcggccacg cgcgggctga atggcgagga attggccgaa tatggcctgc tgcgcgctgc
     1081 cggcgctgtg gccttcaccg atggtggcaa gaccatcgct tcctcgcgcc tgatgcgtct
     1141 cgccctttct tatgcttcgg gattcggcgc ctgcatcgtg cagcatccgg aagatgtgga
     1201 actggccaag ggcggcgctg ccacggccgg ggcacgcgcc acctggatgg gcctgcccgg
     1261 catccccgcc gccgccgagg ccatctgcgt ggcgcgcgac atccgcctcg ccgagctcac
     1321 cggcggtgcg gtgcatttcg cccatgtcac caccggcgag gcgctggcgc tgatccgcac
     1381 cgccaaggac aagggcctgc gcgtgacctg cgataccgcg ccgccttatt tcgacctcaa
     1441 cgagaccgcc atcggcgatt accgtaccta cgccaagctc tccccgccct tgcgcgcgga
     1501 agaagaccgg caagccgtgc tggcggcact gcgagacggc accatcgacg cgatcgcctc
     1561 cgaccaccag ccgcgcgacg cggatgataa gcgtgtgccc ttcgccgatg ccgcccccgg
     1621 cggcgccggg ctcgctacgc tgctcggcat caccctggcg catgtgcaga atggcgggct
     1681 gaccctgccg caggcgctgg cgctcttgac gaagaagccg gctgcatggc tcggcatcga
     1741 ggccggcatc atcgccaagg gccgcccggc ggatttatgc ctgttccacc cggagcgctc
     1801 ctggcaggtg caggcgggaa aactgcctgg caaggcgcag aacacaccat ttgacggccg
     1861 cgccctggaa gggctggtgc tgggcacctg gaaagacggc aagagggctt tcgctcgatg
     1921 atcatgatgt atcttctcat cgccatcttc gcctatctgc tgggcagcat cccgttcggg
     1981 ctgctgctca cgcaattcgc cggcttaggc gacatacgcg ccatcggctc gggcaatatc
     2041 ggcgccacca atgtgctgcg caccggccgc aaagggctgg cggcggcgac cttgctgctg
     2101 gatggcggca aaggctggct cgccgtggcc tggatcgagg cctataacca tggcggcgtg
     2161 gcgctggccg ccttgtgcgt ggtgctgggg catctcttcc ccctctggct gtggttcaag
     2221 ggcggcaagg gtgtcgccac cgggcttggc gtgttcttcg ccctggcctg gcccatcggc
     2281 gccatcgcct gcgccgcctg gctgctgacg gcgttgttgc tgcgtttttc ctcgctgtcc
     2341 gcgctggtgg cctatgccag cgcgccggtg tcggcttggt ttgtcaccca tgattggaaa
     2401 atggccgtgc tcaccgcgct tatcgcggcg ttggtctatt ggaagcacag cccgaacatc
     2461 aaacgcctgc tggacggcac cgagccgcgc atcggcaaga aagcagcagg ctagagtcaa
     2521 aattcaatag gaaacggcag ctatcg
//
LOCUS       DASQCV010000235         3723 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3203195, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000235 DASQCV010000000
VERSION     DASQCV010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3723
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3203195"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..758)
                     /locus_tag="VEQ16_03550"
     CDS             complement(<1..758)
                     /locus_tag="VEQ16_03550"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HYP62931.1"
                     /translation="METKHLKSFLKIADTGSISRAAESLGLAQPSLSQQLLRLEDELK
                     FSLFRRTARGVTLTEAGRIFQEHARTILRNTELAIEDVRELTAEPSGTVIMAVPYSIS
                     KLAGVALIEACLRHAPQIAFRLDEAFTGQIRGWLEMGKIDIGILHDLGPLRHLSARRL
                     ASEELFLIGPAGRYGTVEDMPDVDAASLTGLPMILPGLPHGLRQVIEQEMARLGVSLT
                     VRLDIDAMGHIADLVAAGHGFSILPLPAADDALGA"
     gene            complement(817..2205)
                     /locus_tag="VEQ16_03555"
     CDS             complement(817..2205)
                     /locus_tag="VEQ16_03555"
                     /inference="COORDINATES: protein motif:HMM:NF016338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62932.1"
                     /translation="MAISLLADNPGAWTQHHFEDLYAIPREAREKLQLEAVQINFARL
                     RNKVPALKKLADRQGVERVDQLEDVLAVCFDHRVLKNYPLSIIENRDFPRLTAWLDKL
                     TVHDLTKMDLTGITTIEQWLARLEAFGMLVTYSSGTTGKLSFVPRSRDELAAWRASYF
                     NVNRASTRVDGYTVKMAGFYPGYRGGYQTMLKMLSLFNVEMAGGEANFHTLYDTHIPA
                     DLMALSGRMQSAEDKGEIGRLGLDPALLAQRTAMLEQARRREQDVEAWFGKLIKEFKG
                     SRVRIGGTFSDLYRATKAGLEKGLRCEFAPGSIVTGGGGMKGYKDAPDDWEEQVKYFF
                     GVDRLVNQYGFSESIGNAPLCDAGFFHFMPYSVVLLMDPDGKPLPREGVSRGKLVLMD
                     PIPTSYWGGFISGDEATIHWEDDCPCGWNGPRAAKSIRRFTEAEGGEDKITCAGSQQA
                     YNEFMAFVAGEA"
     gene            2430..3308
                     /locus_tag="VEQ16_03560"
     CDS             2430..3308
                     /locus_tag="VEQ16_03560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010667637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase family protein"
                     /protein_id="HYP62933.1"
                     /translation="MCGIAGLFLKNPSLEPELGRLMSGMLAVLTDRGPDSAGFAIYGR
                     GTSGHLKLTLRAKNGFKDFSLPAGLELSLVEHDDHAVVTVPAAREAELRAFLAKHPDI
                     AIVSSGARMELYKGVGLPEDVSKRFGLAQMSGSHAIGHTRMATESAVTTEGAHPFSTG
                     ADQCLVHNGSLSNHNDVRRVLMREGIEFVTQNDTEVAAGFLSYQLREGKKLDEALHSA
                     LDSLDGFYTFVVGTETGFGVLRDPVACKPAVMAETEDYVAFGSEYRALAGLPGIERAH
                     LFEPEPGQVYFWERAA"
     gene            3305..>3723
                     /locus_tag="VEQ16_03565"
     CDS             3305..>3723
                     /locus_tag="VEQ16_03565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein glxC"
                     /protein_id="HYP62934.1"
                     /translation="MSALQKTLEDAMVFDLASAELRGLNAALQALDGKTNRTDWTILN
                     PRGAHAIAVGVTAPVAITIQGHAGYYCAGMNDGASITINGNAGTGVAENMMSGLVHVK
                     GDASQSAGATAHGGLLIIDGNAAARCGISMKGVDIVV"
BASE COUNT          670 a         1165 c         1163 g          725 t
ORIGIN      
        1 gcacccagcg cgtcgtcggc ggcgggcaga ggcaggatgg aaaacccgtg gcctgctgct
       61 acgagatcgg cgatatggcc catggcgtcg atatccagcc gcacggtcaa actcacgccg
      121 agccgtgcca tttcctgctc gatcacctgc cgcaacccat gcggcaggcc cggcaggatc
      181 atcggcaatc cggtgaggct ggcggcgtcc acatccggca tatcctcaac cgtgccgtag
      241 cgcccggcgg ggccgatgag gaataattcc tcgctcgcca ggcgccgcgc ggagagatga
      301 cgcagcggcc cgagatcgtg caatatgccg atatcgatct tgcccatctc cagccagccg
      361 cggatctgtc ccgtgaaggc ctcgtccagc cggaaggcga tttgcggcgc atggcgcaag
      421 cacgcctcga tgagcgcgac gccggcgagc ttgctgatgg aataaggcac agccatgatc
      481 accgtgccgc tgggctcggc ggtcagttcg cgcacatcct cgatggccag ctccgtgttg
      541 cgcagaatgg tgcgggcatg ttcctggaaa atgcgccccg cttctgtcag cgtcacgccg
      601 cgcgcggtgc ggcggaacag gctgaatttc agctcatcct ccaggcgcag caattgctgg
      661 ctgagcgaag gctgggctag cccaagcgat tccgcggcac ggctgatcga gcccgtatcg
      721 gcgattttca ggaagctttt gaggtgcttc gtttccacgc gcgttccgcc agagattttg
      781 cctatggcat gctataacgc gcttggccgc acggcgtcac gcctcacccg ccacgaatgc
      841 catgaactcg ttataggcct gttgcgagcc ggcgcaggtg atcttgtcct cgccgccttc
      901 cgcctcggtg aagcggcgga tcgatttagc ggcgcgcggc ccgttccagc cgcaggggca
      961 gtcatcttcc caatggatgg tcgcctcgtc acccgagatg aagccgcccc aatagctggt
     1021 cgggatgggg tccatcagca ccagcttgcc gcgcgaaaca ccctcgcgcg gcaagggctt
     1081 gccgtccgga tccatcagca gcaccacgct gtagggcatg aaatggaaga agccggcatc
     1141 gcagagcggg gcgttgccga tgctttccga aaagccatac tggttgacca gcctgtccac
     1201 cccgaagaaa tatttcacct gctcttccca gtcatccggt gcatccttgt agcccttcat
     1261 gccgccgccg ccggtgacga ttgagccggg cgcgaattcg cagcgcagcc ctttttccag
     1321 cccggccttg gtggcgcggt acaaatccga gaaggtgccg ccgatgcgca cgcggctacc
     1381 cttgaattcc ttgatgagct tgccgaacca ggcctccaca tcctgctcgc ggcgcctggc
     1441 ctgctccagc atggcggtgc gctgggccag cagcgccggg tccagcccga ggcggccgat
     1501 ctcgcctttg tcctcggccg actgcatgcg gccggacagc gccatgaggt cggcggggat
     1561 gtgggtgtcg tacagcgtgt ggaaattcgc ctcgccgccg gccatctcga cattgaacag
     1621 gctgagcatt ttcagcatcg tctggtagcc gccgcgatag ccgggataga agccggccat
     1681 tttcaccgtg tagccgtcca ccctggtgct ggcccggttt acgttgaaat agctcgcccg
     1741 ccaggccgcc agctcgtcgc gcgagcgcgg cacgaaagag agcttgccgg tggtgccgct
     1801 ggaataggtg acgagcatgc cgaacgcctc cagccgcgcc agccattgct cgatggtggt
     1861 gatgccggtc aggtccattt tcgtcaggtc atgcacggtc agcttgtcga gccaggcggt
     1921 gagcctgggg aaatcccggt tttcgatgat gctgagcgga taattcttca gcacgcgatg
     1981 gtcgaaacag acagccagca cgtcctccag ctggtcgacc cgctcaaccc cctggcggtc
     2041 ggcaagtttc ttgagcgccg gcaccttgtt gcgcagccgc gcgaaattga tctgcacagc
     2101 ctcgagctgc aatttttccc gcgcctcgcg cgggattgca tagagatcct cgaaatgatg
     2161 ctgggtccag gcgccgggat tatcggccag cagggaaatt gccaaagcgc gggtctcctc
     2221 tcgtctatta ttcttatgct tgggcggcag aataagccgt tcctggcgcc agggaaggtg
     2281 gaatctggac ttgaacctat agccaaaccc aatggctggc tgcctgccct ccggcgtgtt
     2341 tttcctaaca agaattgttt attctttgca gttgacgccc cttccgggcc cagttaagct
     2401 cgtttcagga cagaggagta gataaaccca tgtgtggcat tgccggactg ttcctgaaga
     2461 acccaagcct ggaacccgaa ctcggccggc tcatgagtgg catgctggct gttctcaccg
     2521 atcgcggccc ggattccgcg ggcttcgcca tttatggccg gggaacatca ggacatctca
     2581 aattgacgct ccgcgccaag aacggcttca aggatttttc gctccccgcc gggttggaac
     2641 tgagcctggt ggagcatgat gatcatgctg tggtgaccgt gcccgcggcg cgcgaggccg
     2701 aattgcgcgc gttcctggcc aaacatccgg acatcgccat cgtctcctca ggtgcgcgca
     2761 tggagctgta taaaggggtg ggcctgccgg aggatgtgtc gaagcgtttc ggcctcgcgc
     2821 agatgtccgg cagccatgcc atcggccata cgcgcatggc gacggaatcc gccgtgacca
     2881 ccgaaggcgc acaccctttt tccactggcg ccgaccagtg cctggtgcat aatggctctc
     2941 tctccaacca caacgatgtg cgccgtgtgc tgatgcgcga aggcatcgag tttgtcaccc
     3001 agaacgatac ggaagtggcg gccggtttcc tctcctacca gctgcgcgaa ggcaagaagc
     3061 tggacgaggc gctgcacagc gcgctcgaca gtctggatgg tttctacacc ttcgtcgtcg
     3121 gcaccgagac tggtttcggc gtgctgcgcg atcccgtggc ctgcaaaccg gccgtgatgg
     3181 ccgagacgga ggattacgtg gcgtttggtt cggaatatcg cgcccttgcc gggctgcctg
     3241 gcatcgagag ggcgcatttg tttgagcccg agccagggca ggtttatttc tgggagcgcg
     3301 cggcatgagc gcattgcaaa aaaccttgga ggacgcgatg gtgttcgacc tcgccagcgc
     3361 cgaactgcgc ggcctcaacg cggccctgca ggcgctggat ggaaaaacca accgcacgga
     3421 ctggaccatt ctcaacccgc gcggcgccca tgccatcgct gttggtgtta ccgcgcctgt
     3481 tgccatcacc atccagggcc atgccggcta ttattgcgcg ggcatgaatg acggtgcttc
     3541 catcaccatc aatggcaatg ccggcacggg cgtggcggag aacatgatgt ccggcctcgt
     3601 gcatgtgaag ggcgatgcca gccagtcggc cggtgccacc gcgcatggcg ggttgctcat
     3661 catcgatggc aatgcggcgg cgcgctgcgg catctcgatg aaaggcgtgg acatcgttgt
     3721 caa
//
LOCUS       DASQCV010000236         5814 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_550645, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000236 DASQCV010000000
VERSION     DASQCV010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5814
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_550645"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(382..3081)
                     /locus_tag="VEQ16_03570"
     CDS             complement(382..3081)
                     /locus_tag="VEQ16_03570"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP62935.1"
                     /translation="MTYHSPIQREAAQISTRKARRGWASSSSWAAAIGVGVVTFGLWA
                     GVNRPATDIAPYQGEIGGFAFSPFHKGQSPEAGVYPSQAQIKSDLEFASRYTHNIRTY
                     TVGGDLGQIPALAEGMNLNVTLGGWLDRHPDANAAELAKLVQVANANPDVKQIMVGNE
                     TILRADMTVPELIADIDSVKAQTHVPVSTAEPWHVWLKYPQLAQHVDFITVHLLPYWE
                     GVPENIAVQDAMNRLEAVHDRFPNKRIVIGEIGWPSDGIDIGAARASNVNQARFLRDF
                     FNLAQKDHIDYFVMEAFDQPWKTSFEGRAAGYWGMFTLDRHAKWSLTGPVQNNPDWFI
                     YGLGAVLASFAITMGLLSRRPDIRLPGKLAFAGLVQGFTSILALLFMNMGSTYLSMSA
                     AAVWGALAAGQGLLLFLLIADSFDLVETIFGRVARRHYEPIPAPAGARLPKVSLHLPI
                     CNEPPHMVKQTLDALANLDYDRFEVLVIDNNTSDPRVWEPVAEHCARLGPKFRFFTLG
                     KYKGYKAGALNFALRETAPDAEIIGVIDSDYLVDPDWLRSMVPAFDNPAVGFTQSPQD
                     YRDNDGGLFKRMMFWEYAGFFHAGMVTRNERNAIIQHGTMTLVRKQALINENGWAEWC
                     ITEDSQLGLRLFRAGYEAVYSKKSFGKGVMPDDYNAFRKQRFRWAYGAMRIVRANAGA
                     LLNPFNKELTAGQRWHFIAGWAPWFGDALGILFLMMGLAWSVGLILNPVRFEFPIALF
                     MLPSIGLFFFKIVQILALYKNRVPCGFMDRVGAAVAGLALSHAIGKAVWKGLFTNKLP
                     FLRTPKMKDAPALVQGLVMAREELVILLLTWAAALGVGFGHHWATLETKLWVAVLFTQ
                     SMPYLASVGVSILAALPAPVVKVLPAPAKALPAIGAMHPAVGD"
     gene            3266..4558
                     /locus_tag="VEQ16_03575"
     CDS             3266..4558
                     /locus_tag="VEQ16_03575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019459892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HYP62936.1"
                     /translation="MALTLQLILLALLILINGAFSLAELALVSARRAMLALMERQHIR
                     GAARAKTLADNPQSFLPASQFGITLIGILIGALGGAQLAEHVTGLLRRLPYAGPYAGP
                     MGVVLTVFIITFLTLVFGELVPKQLALRHPERLAAAVAGPLSFVAKATAPVVWLLGVS
                     TRLVLRLFGPESEDRRAVSEEELKAMLVEGAETGVLETEERDIIERVLRLADKPVRAI
                     MTPRTEIVWIDRTARQETIISVLRKAPHSRLVVCDRTVDNVAGLVQAKDLLDRYLAGQ
                     VFSLAEALRQPLAIPDSVTALEALERLKGDTLGMALVLDEYGSFEGIITAADVLEAIV
                     GDAEDSGPPAHAPEPPPDTVYELDGLTPVDETKARLHLPDLPNEGSYHTLGGLILALL
                     LRPARKGDAILFGGWKFEVLAMDGRRVERVRVAREAGD"
     gene            4615..5571
                     /locus_tag="VEQ16_03580"
     CDS             4615..5571
                     /locus_tag="VEQ16_03580"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF016362.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HYP62937.1"
                     /translation="MPFAPHILALLETALAEIFSYHNELDTFLQRSGISTATIFAARK
                     KAEERNSVSGRFDKAPKRIVVQEILRNLGDGNKASDQHIAALITALSKGTFPNATSSA
                     INAIKDLKKNQEEDKAEVEKHRIEEVRKKRETEAAREALIASDAAKRQSFLDDFVSLS
                     SIDNSQKRGYELERFLNEFFEFEGLSPRGSFRVENEQIDGSFLWESRTYLVEAKWVKD
                     KVGGAEFGAFDYKLAGRTVDTRGLFLSINGYSEQAITSLNGKGSLRFICIDGSHLFRS
                     LQPGNDFKKLMTVLRRHSDETGESYLPVSSEQFLKRYSNSLK"
BASE COUNT         1191 a         1775 c         1803 g         1045 t
ORIGIN      
        1 cgatattgga aaaggacggt gcaaaatgcc cgtaagggac gtccccgtcc cgatagacaa
       61 cctaaccgcc aaggccgggg caataccccg gtcgcgcatc agcggtcagc gcggcgctta
      121 tgcccatgcc gcaccgcaaa acgcaagccc caaatcgcag ccctgctccg cgcggctggg
      181 gctaaggaag gccagggctc tgccccctgg acccccgctg ggcctgaggc cccagccccc
      241 cgatagttca ggattgaaaa gggccctgcc tccgtgccgc gacgcggctt ggtggcaggg
      301 cccttttcaa tcctaaaaaa aactaatggg gtctgggcct caggcccagc ggggtcgagg
      361 ggcagagccc ctcgcctttc ctcagtcccc aaccgccggg tgcatggcgc cgatggcggg
      421 cagcgccttg gccggggcgg gcaggacctt gacgaccggg gccggcaggg cagcgaggat
      481 ggagacgccg accgaggcga ggtagggcat ggactgggtg aacagcaccg cgacccacag
      541 cttggtttcc agcgtcgccc agtggtggcc gaagccgacg cccagggcgg ctgcccaggt
      601 gaggagcagg atcaccagct cctcgcgggc catcaccagc ccctgcacca gagcgggcgc
      661 gtccttcatc ttcggcgtgc gcaggaaggg cagcttgttg gtgaagaggc ctttccacac
      721 cgccttgccg atggcgtggc tcagggccag ccccgccacg gccgcaccga cgcggtccat
      781 gaagccgcag ggcacgcggt tcttatagag tgccaggatc tgcacgattt tgaagaagaa
      841 caggccgatc gagggcagca tgaagagggc gatcgggaac tcgaagcgca ccgggttcaa
      901 gatcagcccc accgaccagg ccaggcccat catcaggaac aggatgccca gcgcgtcgcc
      961 gaaccagggc gcccagccgg cgatgaagtg ccagcgctgg ccggcggtca gctccttgtt
     1021 gaaggggttg agcagggcgc cggcattggc gcggacgatg cgcatggcgc cataggccca
     1081 gcggaagcgc tgcttgcgga aggcgttgta atcgtccggc atcacgccct tgccgaagct
     1141 cttcttggag tagacagcct catacccggc gcggaacagg cgcagcccca gctggctgtc
     1201 ctcggtgatg caccattcgg cccagccatt ctcattgatg agggcctgct tgcgcaccag
     1261 cgtcatggtg ccgtgctgga tgatggcgtt gcgctcattg cgggtgacca tgccggcatg
     1321 gaagaagccc gcatattccc agaacatcat cctcttgaag aggccgccat cattgtcgcg
     1381 gtaatcctgc ggcgactggg tgaagcccac ggccgggttg tcgaaggccg gcaccatgga
     1441 gcgcagccag tcggggtcga ccagatagtc ggagtcgatc acaccgatga tctcggcatc
     1501 cggcgcggtc tcccgcaggg cgaagttgag cgcgcccgcc ttgtagccct tgtacttgcc
     1561 cagggtgaag aagcggaact taggcccaag ccgcgcgcaa tgctcggcca ccggctccca
     1621 cacgcggggg tcggaggtgt tgttgtcgat gacgagcacc tcgaaccggt cgtagtccag
     1681 gttggccagc gcatcgagcg tctgcttcac catatgcggc ggctcgttgc agatgggcag
     1741 gtgcagcgac actttcggca gccgggcacc ggcgggagcc gggatgggct catagtggcg
     1801 gcgcgcgacg cggccaaaga tggtctcgac caggtcgaag ctgtcggcga tgagcaggaa
     1861 gagcagcagc ccctgccccg ccgccagcgc gccccacacg gcggcagcac tcatggagag
     1921 ataggtcgac cccatattca tgaagagcag cgccaggatg gaggtgaaac cctgcaccag
     1981 cccggcaaag gccagcttgc ccggcaggcg gatatccggc cggcgcgaga gcagccccat
     2041 ggtgatggcg aaggaagcca gcacggcgcc aaggccgtag atgaaccagt caggattgtt
     2101 ctgcaccggg ccggtcagcg accacttggc gtgacggtcc agggtgaaca tgccccaata
     2161 accggcggcg cggccctcga agctggtctt ccagggctgg tcgaaggctt ccatcacgaa
     2221 atagtcgata tggtccttct gggcgagatt gaagaaatcg cgcaggaagc gcgcctggtt
     2281 gacattgctc gcccgggccg cgccgatatc gataccgtcg gacggccagc cgatctcgcc
     2341 gatgacgatg cgcttgttgg ggaagcggtc atgcaccgcc tccagccggt tcatcgcatc
     2401 ctgcacggcg atattctccg gcacgccctc ccagtagggg agcaggtgca cggtgatgaa
     2461 gtccacatgc tgggccagct gcgggtattt cagccagaca tgccagggct cggcggtcga
     2521 gaccggcaca tgggtctgcg ccttcacgct gtcgatgtcg gcgatcagct ccggcacggt
     2581 catgtccgcg cgcaggatgg tctcgttgcc gaccatgatc tgcttcacgt ccggattggc
     2641 attggcgact tgtaccagct tggcgagctc agccgcattg gcgtccgggt ggcggtccag
     2701 ccagccgccc agcgtcacgt tcaggttcat cccctcggcc agggccggga tctgccccag
     2761 atcgcccccg accgtgtagg tgcggatatt gtgcgtgtag cgcgaggcga attcgagatc
     2821 ggacttgatc tgcgcctggc tcgggtagac ccccgcctcc gggctctgcc ccttgtggaa
     2881 cggggagaac gcgaaccccc cgatctcgcc ctgatagggc gcgatgtccg tcgccggccg
     2941 gttgaccccg gcccataggc cgaacgtaac cacaccgacc ccgatggcgg ccgcccagga
     3001 ggacgagctg gcccagccgc ggcgggcctt gcgggtggag atctgcgcgg cttcacgctg
     3061 gattggcgaa tgatacgtca tggatgaggg tccaaaaatg tccgggacaa gccccgatgt
     3121 aacaatccat gacaggccag tacggcgcgg gctgggcgcg attgtgtccc aactaaggca
     3181 aacacattct gaatccgcat ccgtcccatg tttttcccgc gccttgcccg gtgcgcgggc
     3241 gcaagaaatt gcgctagaaa cgcccatggc cctgaccctg cagctgatcc ttctcgcttt
     3301 gctcatcctg atcaacggcg ccttttccct ggctgaactt gccctcgttt cggcgcggcg
     3361 ggccatgctg gcgctgatgg agcggcaaca tatccgcggc gccgcgcggg caaaaacgct
     3421 ggcggataat ccgcaaagct tcctacccgc ctcgcaattc ggcattaccc tcattggcat
     3481 cctcatcggc gcgctcggcg gcgcccagct ggccgagcat gtcacgggac tgctgcgccg
     3541 cctgccctat gccgggccgt atgccggccc aatgggggtg gttctcaccg tcttcatcat
     3601 cacgttcctc accttggtgt tcggcgagct ggtgcccaag cagctcgcct tgcgccaccc
     3661 ggaacgtctc gccgccgctg tggccggccc gctctctttc gtcgccaagg cgacggcgcc
     3721 ggtggtctgg ctgctcggcg tctccacccg gctggtgctg cgcctgttcg gccccgaatc
     3781 ggaagaccgc cgcgcggtga gcgaggagga gctgaaagcc atgctggtgg agggtgcgga
     3841 aaccggcgtg ctggaaacgg aagagcgcga catcatcgag cgcgtgctgc gcctggccga
     3901 caagccggtg cgcgccatca tgacgccgcg cacggaaatc gtctggatag accgcaccgc
     3961 acggcaggag accatcattt ccgtgctgcg caaggcaccg cattcgcgcc tcgtggtgtg
     4021 cgaccgcacg gtcgacaacg tggccggcct ggtgcaggcg aaagacctcc tggaccgcta
     4081 cctcgccggc caggtttttt ccctggccga agcgctgcgc cagcctctgg ccattccgga
     4141 ttccgtcacc gcgctggaag cgctggaacg gctaaagggc gacacgctcg gcatggccct
     4201 ggtgctggac gaatatggca gctttgaggg catcatcacc gccgccgacg tgctggaagc
     4261 catcgtcggc gacgcggaag attctggtcc ccccgcccac gcgccggaac ccccgcccga
     4321 cacggtgtac gagctggacg ggctgacgcc agtggacgag acgaaagccc ggctgcatct
     4381 gcccgatttg ccgaatgagg gcagctacca cacgctgggg gggttgattt tggcgttact
     4441 gctccgccca gcaaggaagg gcgatgcgat tttgtttggg gggtggaaat ttgaggttct
     4501 ggctatggat gggcgcaggg tggagcgggt acgggtggct agggaggcgg gggattagta
     4561 taagaacacc tgtgcaaaat tccatccaca caccaagagt ccagttaacc taacatgcct
     4621 ttcgcaccgc atattcttgc attacttgaa accgccctcg cggagatttt ttcgtatcac
     4681 aatgaacttg atacatttct ccagcgtagc ggcatttcta ccgcaaccat atttgccgcc
     4741 cgcaagaaag ccgaagaacg aaattccgta tccggccgat ttgacaaagc accaaagcga
     4801 atcgttgttc aagaaattct aaggaatctt ggggatggaa acaaagcaag cgatcagcat
     4861 attgccgcat taattaccgc cttaagcaaa gggacatttc ctaatgcaac ttcttcggcg
     4921 atcaatgcga tcaaagattt gaagaagaat caagaagaag acaaagcaga agtcgaaaag
     4981 catcgcatcg aagaggtgag aaagaagcga gagactgaag ctgcgagaga agcccttatc
     5041 gctagtgacg cagcgaaaag gcaaagtttt cttgatgatt ttgtatcttt gtcatccatc
     5101 gacaacagtc aaaaacgtgg ttacgaactg gagcggtttc taaatgaatt cttcgaattc
     5161 gagggactaa gcccgcgtgg ttcgtttagg gtcgaaaatg agcaaatcga cggctctttc
     5221 ttatgggaat cccgcaccta tctagtcgaa gctaaatggg taaaagataa agtcggaggc
     5281 gctgaatttg gcgcgtttga ttataaactt gcaggtagaa ccgtggacac tagggggctt
     5341 tttctttcga taaacggata ttccgaacaa gccatcacaa gcttaaatgg aaagggctct
     5401 ctacgtttta tctgcataga cggatcacat ttgttccgct ctttgcagcc cggaaatgat
     5461 tttaaaaaac ttatgactgt tttgcggcgg cactctgacg aaacgggaga atcttatttg
     5521 cctgttagtt ccgagcaatt tctaaaaaga tactccaact ctctcaaatg aggaggggca
     5581 ataagtaaca catgccggat gccacgcata gacagatgga aggcagcgga agcttccctc
     5641 tgataaaacg tcaaaaggat taatcctact aaaacctacc ccagcccccg ctccaccgcc
     5701 cgcgccacac gcagcgcgat atcatcccga taaatcggtg ccgccacctg caccgaagtc
     5761 ggcagtccca ccccattcac ccccatcggc acagaaaccg cgggctggcg tgtc
//
LOCUS       DASQCV010000237         4713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_716982, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000237 DASQCV010000000
VERSION     DASQCV010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4713
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_716982"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..407
                     /locus_tag="VEQ16_03585"
     CDS             <1..407
                     /locus_tag="VEQ16_03585"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019459597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HYP62938.1"
                     /translation="PNTFVPGRNILFMTFAAALAYRRGIKHLVTGVCETDYSGYPDCR
                     DDTMKAVQVALNLGMESRFVIHTPLMWIDKAKTWELAEELAGAPLVELIREETHSCYN
                     GDRTHHHEWGYGCGTCPACELRAQGYRRFISA"
     gene            complement(490..990)
                     /locus_tag="VEQ16_03590"
     CDS             complement(490..990)
                     /locus_tag="VEQ16_03590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62939.1"
                     /translation="MNWIRKTLSLRNMLCTSALLLFAYGAHAQSSQDSAISMSDVNSF
                     LAKMRDAARHHDQPALCNLLVYPFPLKIDEKGQYSSAKDCEAHFAKTFPPALLEKLQH
                     VRPEDLFEAQGMLVAGNGWIWLSKVWVGTTHFGSSQKDWDYSNAALWQMKILDLDDPG
                     GIMGSP"
     gene            complement(1006..1773)
                     /locus_tag="VEQ16_03595"
     CDS             complement(1006..1773)
                     /locus_tag="VEQ16_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003618018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HYP62940.1"
                     /translation="MTGRDGGAELAPIDPSPVVILVRPQLAENIGAVARAMGNGGLFH
                     LRLVAPRDGWPLPRAWITGSGAHRILDEAQVFGSVADAVADLHRVFATCPRPRHIIKP
                     VLTARGGAAEIVSIGQRGLKAGILFGPERTGLDNEDIACADSLIRYDLNPDFMSLNLA
                     QAVMVMGYEWWLARSPEQPARELQVNETAPATKGELDNFMAHLIRACDDSGFLRNEQK
                     RPGMVRNLRHFFQRGEVTRQELRTLHGIITELQRRRY"
     gene            complement(1796..3148)
                     /gene="cysS"
                     /locus_tag="VEQ16_03600"
     CDS             complement(1796..3148)
                     /gene="cysS"
                     /locus_tag="VEQ16_03600"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HYP62941.1"
                     /translation="MTQLTLYNTRTRAKEIFTPLDPTNVRAYLCGPTVYDRAHLGNAR
                     NVVIFDILVRLLRRLYPRVTYVRNITDIDDKINNRAKERGVSIEEVTEGPIRWYHEDM
                     GALYTMPPDIEPRATGHLPDIIAIIQRLIAGGHAYEAEGHVLFSVASDPDYGKFSGRS
                     PDELIAGARVDVAPYKRDAGDFVLWKPSSPDLPGWDSPWGRGRPGWHIECSAMSWRHL
                     GENFDIHGGGDDLIFPHHENEIAQSCCAFPGSKFANVWVHNRMLLVNGEKMSKSLGNF
                     LVLHDVLEKAPGEAVRYLLMRSHYRSTLDFSEAGLVEARKELDRFYRALEKFSGVAAS
                     SEIPVSVLAPLLDDLNTPGAIAALHQLADAALAGSEIAAADLRAAGQVLGLFNVSPEE
                     WFRGDIDQSVIEHIVQQRVVARAAKDFKESDRLRDVLLQEHGVIIEDGAKGTYTLRKA
                     "
     gene            3225..4610
                     /locus_tag="VEQ16_03605"
     CDS             3225..4610
                     /locus_tag="VEQ16_03605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020592922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYP62942.1"
                     /translation="MQKILDKVDAGLDASLERLFAFLRIQSISAQPAHKADCLHAAEW
                     ARSMLEGLGFTARLSETTGLPGVVATNHEAGPDAPHVLFYGHYDVQPADPRELWHSDP
                     FDPQLVDGPRGKKIVARGAVDDKGQVVSFLEACRAHLAVNGKLPVRLTVLLEGEEENG
                     SPSLAELLAKEHDTLAAADFVYVADTNMWDAATPAITASLRGLAAIEVRIHGPSRDLH
                     SGFFGGLALNPIQVLVNILGALKDETGRITIPGFYDGTAPVSPAQEADWTRLGFNAGG
                     FLGGVGLTTPAGEAGQLPLAQIWARPTAEINGIYGGYQGDGSKTVIPAHATAKLTFRL
                     VAGQEPGRILDAFEQFVTSRLPPDARAEFTRGGAAPGYGLDPSAPFLRAAQAALTEEF
                     GKRAALVGCGASIPVVEAFKTQLGLDTLLAGFGLDDDCVHSPNEKFDLACFHRGTRAH
                     ARLLAALAEKS"
BASE COUNT          897 a         1531 c         1408 g          877 t
ORIGIN      
        1 tgcccaacac cttcgtgccg ggccgcaata ttctctttat gaccttcgcc gcggctttgg
       61 cctaccggcg cgggataaag catctcgtca ccggtgtgtg cgagacggat tattccggct
      121 atccggattg ccgcgacgac acgatgaagg cggtgcaggt ggcgctcaat ctcggcatgg
      181 agagccggtt tgtcatccac accccgctga tgtggattga taaggcaaaa acctgggaac
      241 ttgcggaaga gctggcaggt gcgccgcttg tggagttgat ccgtgaggag acgcatagct
      301 gctacaacgg cgaccgtacg caccatcatg aatggggcta tggctgcggc acctgcccgg
      361 cttgtgagct gcgggcgcag gggtatcggc gcttcatctc ggcctagagt cttcagctaa
      421 aagctgaaga ctctaggttt ttttgagcgg gaatagatca gcccgcaaaa tcaaccggcc
      481 ccatacaggc tatggggaac ccattatgcc gcccggatcg tccagatcga gtatcttcat
      541 ctgccacagg gcggcattcg agtaatccca atccttctgc gacgacccaa aatgcgtggt
      601 accaacccag actttcgaca gccagatcca tccgttaccg gccaccagca ttccctgcgc
      661 ttcgaataga tcctcaggac gaacatgctg cagtttttcc agcagcgcgg gcggaaatgt
      721 cttggcgaaa tgcgcctcgc aatccttcgc ggaggaatac tgaccctttt cgtcaatttt
      781 caaagggaat ggatagacca gaaggttgca taaagctggc tgatcatggt gacgcgccgc
      841 atcccgcatt ttggccagga atgaattcac gtcagacatg gaaatggcgg aatcctggga
      901 agattgcgca tgtgcgccat aagcaaacaa caggagggcg ctggtacaga gcatattgcg
      961 gagcgataag gtctttctga tccagttcat cacccgcatc tcctctcaat accttcttct
     1021 ttgtaattct gttataatcc cgtgcagcgt gcgcagctcc tggcgcgtca cttcgccgcg
     1081 ctggaagaaa tggcgcagat tgcgcaccat gccggggcgt ttctgttcat tgcgcaaaaa
     1141 gccggaatcg tcgcaagcgc ggatgagatg cgccatgaaa ttatcgagct cgcccttggt
     1201 cgcgggcgcg gtctcattca cttgcagctc gcgggcgggt tgttccgggc tgcgcgccag
     1261 ccaccattca taacccatca ccatcactgc ctgggcgaga ttgagggaca tgaaatccgg
     1321 gttgagatcg taccggatca ggctgtcggc acaggcgata tcctcattat ccagccccgt
     1381 gcgctccggc ccgaacaata tgcccgcctt caaaccacgt tggccgatgc tgacgatttc
     1441 cgcagcgccg ccacgcgcgg tgagcacggg cttgatgata tggcgcgggc gcgggcaggt
     1501 ggcgaagacg cggtgcagat ccgccaccgc gtccgccacg ctgccgaaaa cctgcgcctc
     1561 gtcgagaatc ctgtgcgcgc cggagccggt gatccaggcg cgcggcagcg gccagccgtc
     1621 gcgcggcgcc accaggcgca gatgaaacag cccgccatta cccatagccc tcgccaccgc
     1681 gccgatattc tcggccagct gcgggcgcac caaaatcacc accggcgagg ggtcgatcgg
     1741 cgccagttcc gcgccgccgt cacgcccggt catttgtttg ctctccacac cttatttacg
     1801 ccttgcgcaa tgtgtaagtt cccttcgcgc catcttcgat gatgacacca tgctcctgca
     1861 aaagaacatc gcgcagccgg tcggattcct tgaaatcctt ggcagcccgc gcgaccacgc
     1921 gctgctggac gatatgctcg atcaccgatt gatcgatatc gccccggaac cattcttccg
     1981 ggctcacatt gaacagcccg agcacttgcc ccgccgcgcg caaatccgca gccgctatct
     2041 cgctccccgc cagcgcggca tcggccagct ggtgcagagc agcgatggcg ccgggcgtgt
     2101 tgaggtcatc cagcagcggc gccagcacgc tcacgggaat ttcggaagac gctgccacac
     2161 ctgagaattt ttccaaggcg cggtagaacc ggtccagctc cttgcgcgcc tcgaccagcc
     2221 ccgcctcgga aaaatccagc gtggagcggt aatgcgagcg catcagcaga tagcgcactg
     2281 cctcgcccgg cgccttctca agcacgtcgt gcagcaccag gaagttaccg agcgatttgc
     2341 tcatcttctc gccattcacc agcagcatgc gattatgcac ccatacattg gcgaatttcg
     2401 agccagggaa agcgcagcag ctttgcgcga tctcattctc atgatgcggg aagatcaaat
     2461 catccccgcc gccatgaata tcgaaattct cacccagatg ccgccagctc atggccgagc
     2521 attcaatatg ccagcccggc cggccgcgcc cccagggact gtcccagccc ggcaggtctg
     2581 gggaggacgg cttccacagc acgaaatccc cggcatcgcg cttatagggc gccacgtcca
     2641 cccgggcacc cgcaatcagc tcatccgggc tgcggcccga gaatttgccg taatccgggt
     2701 cggaagcgac ggagaacagc acatgcccct cggcctcata ggcatggccg ccggcgatga
     2761 ggcgctggat gatggcgata atgtcaggca gatgcccggt cgcgcgcggc tcgatatcgg
     2821 gcggcatggt gtaaagcgcg cccatgtcct catggtacca gcgtatcggc ccttccgtga
     2881 cctcctcgat ggaaacgccc cgctccttgg cccggttatt gatcttgtcg tcaatgtccg
     2941 tgatgttccg cacataggtg acgcgcggat agagccgccg cagcaggcgc accagaatgt
     3001 cgaaaatcac cacattgcgc gcattgccca gatgcgcccg gtcatacaca gtcggcccgc
     3061 acaaataggc tcgcacattg gtggggtcga gcggcgtaaa aatttctttc gcgcgggtcc
     3121 gggtgttgta gagcgtaagc tgggtcatgg gggctctttt ggcctgtttt ctctccaaat
     3181 caagccgcgt tgattttttg ccccgccgcg tcccaaataa gcccatgcaa aagattctcg
     3241 acaaggtcga tgccgggctc gacgcctccc tggagcggct gttcgccttc ctgcgcatcc
     3301 aatccatctc cgcccagccg gcgcataagg cggattgcct gcatgctgcc gaatgggcac
     3361 ggtccatgct ggagggcctg ggcttcacgg cccgcctgtc cgagaccacc ggcctgccgg
     3421 gcgtggtggc caccaaccat gaggccgggc cggacgcgcc gcatgtgctt ttctacggcc
     3481 attacgacgt gcagcccgcc gacccgcggg agctgtggca ttccgatcca tttgatccgc
     3541 agctggtgga cgggccgcgc ggcaagaaaa tcgtcgcgcg cggggcggtg gatgacaaag
     3601 gccaggtggt cagcttcctc gaagcctgcc gcgcccatct cgccgtgaac ggcaagctcc
     3661 cggtgcggct gaccgtgctg ctggaaggcg aggaggaaaa cggcagcccc tccctcgccg
     3721 agctgctggc caaggagcat gacacgctgg cggcggcgga tttcgtctat gtcgccgaca
     3781 ccaatatgtg ggacgccgcc accccggcca tcaccgcctc gctgcgcggg ctggcggcca
     3841 tcgaggtgcg catccatggg cccagccgcg acctgcattc cggcttcttc ggcgggctgg
     3901 cgctcaatcc catccaggtg ctggtgaata tcctcggggc gctgaaggac gagaccggcc
     3961 gcatcaccat ccccggcttt tatgacggca ccgccccggt ctcaccggcg caggaagcgg
     4021 actggacacg gctcggcttt aacgccggag gatttctcgg cggcgtcggc ctcaccaccc
     4081 cggctggtga ggccgggcag ttgccgctgg cgcaaatctg ggccaggccg acggcggaaa
     4141 tcaatggcat ctatggcggc taccagggcg atggcagcaa gacggtcatc cccgcccacg
     4201 ccacggcgaa acttaccttc cgcctcgtcg cgggccagga gccaggcaga atcctggatg
     4261 cgttcgagca attcgtgacc agccgcctgc cgcctgacgc gcgcgccgaa ttcacccgcg
     4321 gcggcgccgc gccgggttat gggctcgacc ccagcgcgcc attcttgcgc gcggcgcagg
     4381 cggcgctgac ggaggaattc ggcaaacggg cggctctggt ggggtgcggc gcgtccattc
     4441 ccgtggtgga agccttcaag acccagctcg ggctggacac gctgctggcc ggcttcgggc
     4501 tggatgatga ttgcgtccac tcgcccaacg agaaattcga cctcgcctgt tttcatcggg
     4561 gcacgcgggc tcatgcgagg ctgctggcgg cgttggctga gaagagctga cccccttcag
     4621 cagtaccgga tggcgtcctg cagaatttcc accacgccgc ccgcgaccag cgccacatcg
     4681 aaacgcgtct ccgcccgtgc ccaatcctca tgc
//
LOCUS       DASQCV010000238         3215 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_884041, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000238 DASQCV010000000
VERSION     DASQCV010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3215
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_884041"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(173..2257)
                     /locus_tag="VEQ16_03610"
     CDS             complement(173..2257)
                     /locus_tag="VEQ16_03610"
                     /inference="COORDINATES: protein motif:HMM:NF012927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP62943.1"
                     /translation="MHAKYPRIFTPLRLGPVEVPARFFFAPHGSALSAGTKPSDDLVA
                     YSAERVRDGGCGLVILAMVVHERGRTRQPSPHPEQNIAAFRVMTDAIHEAGGKIFGQV
                     FYWWGGYGQWQPLSPPAPSLGPSVRQFGYNERTISTHEMGQAEIQAMHAAMRQTARNM
                     REAGFDGLLLHGSHAGLIEQCLSPYFNARTDEYGGSFENRMRFMVESLQAAREGAGPD
                     LAVGIRINCDEMLPGGYGVETARAAVETICKRGLVDYVDLDMGVEPQQFYHGMPTSFV
                     EPLPYRASVAQVRQAAGDVPVLSVLGRVTDMAQAEAALAEGVCDMAGAARQLIAEPRF
                     VQNARAGLEDQSRTCIACNWCTAAMGDGAQGCTINPASYRERLWGVARFAPAARPSQV
                     IVIGGGPGGMEAARVSALKGHRVTLFEARGRLGGALALWADLPGREINRQAIVWWERE
                     LARLKVDVRLNSTASPESVLAERPDAVIIATGARYSTGGRSVTFDADIPGHDQDFVFR
                     PEEILLGGARPQGRVLLLDGEGLHASAGIAELLGREGAEVSYVTAGFSPLSPRLIDNF
                     EARFIIKRLKQAGVRFKPGAWVRRIGAQEVTLYDTHTGEEWGEAADAVVLVTGRVPQD
                     SLARALEGKVAQLFTIGDALAARPLAAASYEGQKFARLIGEPEAPRDFVEAFFRADEA
                     AVMILPADMKRG"
     gene            2481..2924
                     /locus_tag="VEQ16_03615"
     CDS             2481..2924
                     /locus_tag="VEQ16_03615"
                     /inference="COORDINATES: protein motif:HMM:NF028308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RT0821/Lpp0805 family surface protein"
                     /protein_id="HYP62944.1"
                     /translation="MKLGDKIHMRDGRAQVMAMPMTMPWRAGMALAALLAFAAPAQAQ
                     LGNPFGGLRGNTNTLTSSDYDVARQTVRKLLNDTPVVIGRSEDWRNPATGNSGKFTIL
                     STFTRDNMPCRRVNADIAFARTPSQPRSWTLDACQIPSGQWKVAS"
BASE COUNT          566 a         1095 c          998 g          556 t
ORIGIN      
        1 gaatccgcaa aggctggcgg gggcggcgca gttgaatgcg gcggtgacgc ggcaggccag
       61 catcattgcc tatatcgatg atttcaagct gatgctggtt ctggcgctga tcgctttgcc
      121 gctgacgttg ctgctgcggc cgccgaagcc ggctgggggg taggggaggc tttcagcccc
      181 gcttcatatc cgccggcaga atcatcaccg cagcctcatc cgcccggaag aacgcctcaa
      241 caaaatcacg cggcgcctcc ggctcgccga tcagccgcgc gaatttctgg ccttcgtagg
      301 aagcggccgc cagaggccgc gccgccaggg cgtcgccgat ggtgaaaagc tgcgccacct
      361 tgccttccaa cgcccgggcc aaagaatcct gcggcacgcg cccggtgacg agcaccaccg
      421 cgtccgccgc ctcgccccat tcctcgcctg tatgcgtgtc gtagagcgtc acctcctgcg
      481 cgccgatgcg ccgcacccag gcgccgggct taaagcgcac cccggcttgt ttgagccgct
      541 tgataatgaa gcgtgcctcg aaattatcga taagccgtgg cgagagcggc gagaagccgg
      601 cggtgacata gctcacctcc gcgccctccc gccccagcag ctcggcgatg ccggcgctgg
      661 catgcagccc ctcaccatcc agcagcagaa cgcgcccctg tggacgggcg ccgcctagca
      721 gaatctcctc aggccggaac acgaaatcct ggtcatggcc gggaatatcg gcgtcgaacg
      781 tcacgctgcg tccgccggtg ctgtagcgcg cgccggtggc gatgatgacg gcgtccggcc
      841 gctcagccag gacgctctcg gggcttgccg tgctgttcag ccgcacatcc accttgagac
      901 gcgccagctc ccgttcccac caaacgatgg cctgcctgtt gatctcgcgc cccggtagat
      961 ccgcccataa ggcgagcgcc ccgccaagcc gcccccgcgc ctcgaacaat gtcacgcgat
     1021 ggcccttcaa agccgacaca cgagccgcct ccataccgcc cggtccaccg cctatgacga
     1081 tcacttggct gggccgcgcg gcgggggcaa aacgcgccac gccccagagc cgctcgcgat
     1141 agctggccgg gttgatggta cagccctgcg ccccgtcgcc catggcggcg gtacaccagt
     1201 tgcaggctat gcaggtccgg ctttggtctt ccagcccggc ccgcgcattc tgcacgaagc
     1261 gcggttcggc gatgagctgg cgtgccgccc cggccatgtc gcacacgccc tcggccagcg
     1321 ccgcctcggc ctgcgccatg tcggtcacgc gccccagcac gctcagcact ggcacgtccc
     1381 ccgcagcctg gcgcacttgg gctaccgaag cgcggtaggg caggggctcc acgaaggagg
     1441 ttggcatgcc atgataaaat tgctgcggct ccacccccat gtcgaggtct acataatcca
     1501 ccagcccgcg cttgcagatt gtctccactg ccgcccgcgc cgtttccacc ccatagccgc
     1561 cgggcagcat ctcgtcgcaa ttgatgcgga tgccgacggc gaggtccggt cccgcgccct
     1621 cacgcgcggc ctgcaacgat tccaccatga agcgcatgcg gttctcgaac gagccgccat
     1681 attcgtcagt ccgcgcattg aaatagggcg agaggcactg ctcgatcagc ccggcatgtg
     1741 agccgtgcag caacagcccg tcgaacccgg cctcgcgcat attgcgcgcg gtctggcgca
     1801 tcgccgcatg catcgcctgg atttccgcct gtcccatctc gtgggtcgag attgtgcgct
     1861 cattatagcc gaattgccgc acggacggcc ccagggacgg tgccggcggg ctcaagggct
     1921 gccattgccc gtagccgccc caccaataga agacctggcc gaagatcttg ccccccgcct
     1981 catggatggc gtctgtcatc acccggaagg cggcgatatt ctgctcgggg tgtggcgagg
     2041 gctggcgcgt gcggccgcgc tcatgcacca ccatggcgag gatgacgagc ccgcacccgc
     2101 catcgcgcac gcgctcggcg ctataggcca ccagatcgtc cgagggtttg gtgcccgcgc
     2161 tcagcgcgct gccatggggg gcgaagaaga agcgcgccgg cacctctacg ggccccagcc
     2221 tgagcggcgt gaaaatacgc ggatatttgg cgtgcatggg tgtctcccgg cgtttttgtc
     2281 ggtcgttatt agtcgttatt attggtgctt cattattggt gcttcaggca ggcggcgcgg
     2341 caactttccc gcatcggccg cccaggcgca atccctggta tggttaatgg ttgtaaacgc
     2401 attacgaaca cctaaatgca gaatgtctgg ggcgcgccat gccgcgcgaa gggtaaacca
     2461 cgccggagac gagggaagcc atgaagcttg gcgacaagat acatatgcgt gatggccgtg
     2521 cccaggtgat ggcgatgcca atgacgatgc catggcgggc cggcatggcg ctggccgcct
     2581 tgcttgcctt cgctgccccg gcccaggcgc agctgggcaa cccgttcggc ggcttgaggg
     2641 gcaacaccaa caccctcacc agtagcgatt acgacgtggc ccgccagacg gtgcgcaagc
     2701 tgctcaatga cacgccggtc gtgattgggc gctctgagga ctggcgcaat cccgccaccg
     2761 gcaatagcgg caaattcacc atcctcagta ctttcacccg cgataatatg ccctgccgcc
     2821 gggtgaatgc cgatatcgcc ttcgcccgca ccccgagcca gccgcgtagc tggacgctcg
     2881 atgcatgcca gataccgagc gggcagtgga aggtggcttc ctgaaacagc ccggctaggt
     2941 gccggaaaac acgcgttttt tcttgagtcg agaggcttta gttatagatt ctgctttgaa
     3001 cacttaatga agtgccaaaa tttagcgccg tgaggccggc gcgccaggat gacgcaaaac
     3061 caggcgccag ggccagggcg gtcacgccag aagtgcctgt caacgcagct tgggagtcca
     3121 tagcatgccg tgtcagtccc ggagtgactt ctgatgcgcc acggcatggt gttcgccctg
     3181 attctgccgc tcaccggttg catggtgggg cccaa
//
LOCUS       DASQCV010000239         5347 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1713444, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000239 DASQCV010000000
VERSION     DASQCV010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5347
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1713444"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..946
                     /gene="tagH"
                     /locus_tag="VEQ16_03620"
     CDS             <1..946
                     /gene="tagH"
                     /locus_tag="VEQ16_03620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system-associated FHA domain
                     protein TagH"
                     /protein_id="HYP62945.1"
                     /translation="PTQPDHTPSFSDAFTPPRAIPQIPEDDDWDLGFGPAKPAAPAPV
                     PSAAPPAPPPPPPPPAPPAPPVQAAPPVQEFVPPPPPLPAPVAAPVASANPFVEEPPA
                     RPAPAPAYAPAPAPAASSDALLAAFLAGAGISGARPENPEALMQALGSAFRATVSGIR
                     QTLIARASIKGEFRIEQTMIRSRGNNPLKFSADDDDALSALLGLGRRVDMKPDAAVAD
                     ALRDMRLHELATMAAMQEAVRALLAQLNPAGLRAEAEQGGGLSLLPAQKKARAFEAYE
                     KLHENITRALADDFDRVFGKSFARAYEIALRDISARDG"
     gene            948..1400
                     /gene="tssJ"
                     /locus_tag="VEQ16_03625"
     CDS             948..1400
                     /gene="tssJ"
                     /locus_tag="VEQ16_03625"
                     /inference="COORDINATES: protein motif:HMM:TIGR03352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system lipoprotein TssJ"
                     /protein_id="HYP62946.1"
                     /translation="MKKLIAACLLLALTSCGGGAPPPGVVTLTITGSANQNPSSPGDP
                     GNPVPVRIYQLTATGKFQSADVYSLMNNEAPLLGTDEMGASTQLLLSPGQTQTQTINV
                     KPGVTDLGIAVLFQNINQSTWKLVAPVAASGPTKLSVKVDGLTAALGQ"
     gene            1448..2779
                     /gene="tssK"
                     /locus_tag="VEQ16_03630"
     CDS             1448..2779
                     /gene="tssK"
                     /locus_tag="VEQ16_03630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssK"
                     /protein_id="HYP62947.1"
                     /translation="MSWTNRVVWQEGMFLRSQHFQQQDRWLEALLRGRVASLRPHPWG
                     LTQMTLDKELLGTGRFAVAAASGVFEDGTPFTLPGETEHPAPFEVPENTRGVLIHLAL
                     PIRQNGALEIAAADGSAEGRYNMRSFEAYDTHSASPQPAELLIGRLKMRYLLDTDDRG
                     GYLCIPLARIMEVSSDKRVTLDENWLPPALVCHAVPPLAGLITEFAGMVNQRGEALAA
                     RVNAPGSRGVAEVADFMLLQALNRWQALLQHWADTANIHPETLYSAYVEMAAELATFT
                     ATDRRPSTYPGYRHEDLQRSFAPVIADLRRALSSVIETNATAIPLQERRHGVHVGAIT
                     DRNVLRAANFVLSVQADVPTETLRRLFPAQIKIGAVEHIRELVNVALPGIAVRPMPVA
                     PRQIPFYAGATYFELDRNSPHWQQMQTSGGFALHISGDFPNLRMELWAIKG"
     gene            2813..4225
                     /gene="icmH"
                     /locus_tag="VEQ16_03635"
     CDS             2813..4225
                     /gene="icmH"
                     /locus_tag="VEQ16_03635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system protein IcmH/DotU"
                     /protein_id="HYP62948.1"
                     /translation="MSDNPFSEPDDSDRTVIRPAPGGRRPAAPPPASTPSPFSDPFAS
                     APPPRQTAPDPFAQAPSGPARAPSDAPETIGMGGSPLLVAAGPLLQLLARLRNTLNPP
                     DAGDLRERAVREMRRFEESVRAQNLPMEQLRPAHYALCASLDDVVLATPWGAQGAWAA
                     HSMVSTFHQEVRSGERFFDILNQLKQNPGNFLPVLELMYFCLSLGYMGRYRLSPRGPA
                     EIDQLREETYAVIRRQRPAGEAALSPHWQGVNAPYRARRFHVPVWGAGIAAVGVLALL
                     YGAYLFSLSGKSDAQFEVLLTAPPTPMPAITRAAPVVAPAEPAPVGPTILDRLSGFLA
                     PEIAAGKVSVVGTVFAPIVRINNQGLFASGSAAVESGDIPLLQKIGTALGRETGTVVV
                     TGYTDNQPINTLQFPSNFELSNARAQAAATLLDQSIGDESRVTAKGMGQADPVADNST
                     PAGRAQNRRIEIVLNHPTGT"
     gene            4233..>5347
                     /gene="tssM"
                     /locus_tag="VEQ16_03640"
     CDS             4233..>5347
                     /gene="tssM"
                     /locus_tag="VEQ16_03640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HYP62949.1"
                     /translation="MHKIFGFLLSRWVLSFVFVAILVALVWYFAPFIPALAGLLPRAL
                     IIVALFAVWLAVNLLLSLRRKQREDLLTIGIAGPGAGPSAADEELAAMAEKLKTSLAL
                     LKKARGTRGYLYEQPWYVIIGPPGAGKTTALLNAGLKFPLAAELGQGAVAGVGGTRLC
                     DWWFTENAVLIDTAGRYTTQDSDAGVDKAGWEGFLDLLKRTRQRQALNGVVVAISLAD
                     IASAPREERLAHARAIRKRIKDLTERLTLKLPVYALLTKADLIAGFTEFFDDLDAEKR
                     GQVWGTSFAANAANPVTGFAEEFTALTKRLDDRLLDLMQRERSPDRRAMITGFPAQFA
                     SLQAPLTEFLNEAFGGSTLDPAPYLRGVYFASGTQEGT"
BASE COUNT          869 a         1851 c         1729 g          898 t
ORIGIN      
        1 gccgacgcag ccggatcata cgccctcctt ctcggacgcc ttcacgccgc cgcgcgccat
       61 cccgcaaatt cccgaggacg atgactggga tctcggcttt ggtccggcca agccggcggc
      121 gccggcgccg gtgccgagcg ccgcgccgcc cgcaccgccc ccgccgcctc caccaccggc
      181 acctcccgcg ccgccggtgc aggctgcacc gcctgtgcag gaatttgtac cgcccccgcc
      241 accactgcct gcgcccgttg cggcaccggt tgcttctgcg aatccgttcg tcgaggaacc
      301 gccggcacgg cccgcgccgg cgcctgccta tgcgccagcg ccggcgcccg cagcctcgtc
      361 cgatgcgctg ctcgccgcct tcctggccgg cgctggcatc agcggcgcca ggccagaaaa
      421 tccggaagct ctcatgcaag cgctgggctc cgctttccgc gccaccgtgt ccggcatccg
      481 ccagacactc attgcgcgtg ccagcatcaa gggcgagttc cgcatcgagc agaccatgat
      541 ccggtctcgc ggcaacaacc cgctgaaatt ctcggccgat gatgatgacg cgctgagcgc
      601 gctgctcggg ctggggcggc gcgtggacat gaagccggat gccgccgtgg ccgacgcgct
      661 gcgcgacatg cggctgcatg agctggccac catggcggcg atgcaggaag cggtgcgcgc
      721 cctgctggca cagctcaacc cggctggcct gcgcgccgag gccgagcagg gcggcgggct
      781 ctcgctactg ccggcacaga agaaggcacg tgctttcgag gcctacgaga aacttcacga
      841 gaacatcacg cgggcgctgg ccgatgattt cgaccgcgta tttggcaaat cattcgcgcg
      901 tgcgtatgaa atcgcactac gcgacatcag cgccagggat ggctaaaatg aaaaaactta
      961 ttgcggcatg tcttcttctc gccttgacca gctgcggcgg cggcgcgccc ccgccgggcg
     1021 tggtgacgct gaccatcacc ggcagcgcca accaaaaccc gagctcgccg ggcgatcccg
     1081 gcaatccggt gccggtgcgc atctaccagc tcaccgcgac gggtaagttc cagtcggcgg
     1141 atgtatattc gctgatgaat aacgaggcgc cgctgctcgg cacggacgag atgggcgctt
     1201 ccacccagct gctgctgagc cccggccaga cccagaccca gaccatcaat gtgaagccgg
     1261 gtgtcaccga tctcggcatc gccgtgctgt tccagaatat caaccaatcg acctggaagc
     1321 tggtagcccc ggtggcggcc agcgggccga cgaaactgag cgtgaaagtg gatgggctga
     1381 ccgctgcgct ggggcaataa agacaaacgg ctggaccgta acgaggcaga atgaacaggg
     1441 atagagcatg agctggacca atcgcgtcgt atggcaggag ggcatgttcc tccgctcgca
     1501 gcatttccag cagcaggatc gctggctgga ggcgttgctg cgcggccgcg tcgccagtct
     1561 gcgcccgcat ccctggggcc tgacgcagat gacactggac aaggagctgc tcggcaccgg
     1621 gcgcttcgcc gtggcggcgg cgtccggcgt gttcgaggat ggcacgcctt tcacgctgcc
     1681 cggcgagacc gagcatccgg caccgttcga ggtgccggaa aatacgcgcg gcgtgctcat
     1741 ccatctggcc ctgcccatcc gccagaatgg cgcactggaa atcgccgccg ccgatggcag
     1801 cgccgagggc cgctacaaca tgcgcagctt cgaggcctat gacacgcatt ccgcctcgcc
     1861 acagccggct gagctgctca tcggccggct gaagatgcgt tacctgctcg atacggatga
     1921 tcgcggcggc tatctctgca ttccgctggc gcgcatcatg gaggtttcgt ccgacaagcg
     1981 ggtgacgctg gatgagaact ggctgccccc tgccctcgtc tgccatgcgg tgccgccgct
     2041 cgccgggctc atcacggaat ttgccggcat ggtgaaccag cgcggcgagg cgctggcggc
     2101 gcgggtgaat gcgccgggct cgcgtggcgt ggccgaggtg gccgacttca tgctgctgca
     2161 ggcgctcaat cgctggcagg cgctgctgca gcattgggcc gatacggcca atatccatcc
     2221 cgagacgctt tattccgcct atgtggagat ggcggcggag ctcgccacct tcaccgccac
     2281 agaccgccgg cccagcacct atcccggcta ccggcatgag gatctgcagc gcagtttcgc
     2341 gccggtcatc gccgatctgc gccgggctct gtcctccgtc atcgaaacca atgcgaccgc
     2401 catcccgctg caggaacgcc gccatggcgt gcatgtcggg gcgatcaccg accgcaacgt
     2461 tctgcgcgcc gccaatttcg tgctctcggt acaagccgac gtgccgaccg agacgctgcg
     2521 ccgcctgttc ccggcgcaga tcaagatcgg cgccgtcgag catatccgcg agctggtgaa
     2581 tgtcgcgctg ccgggcatcg ccgtgcggcc gatgccggtg gcaccaaggc agatcccctt
     2641 ctatgccggg gcaacttatt tcgaactcga ccgcaactcg ccgcactggc agcagatgca
     2701 gacctcgggc gggttcgcgc tgcatatttc cggggatttc cccaatctgc gtatggagct
     2761 ttgggccatc aagggctgat gccggcccat ctttaggagg cgtgtgacga ttatgagcga
     2821 taatccgttc tccgaaccgg acgattccga ccgcaccgtc atccgcccgg caccgggcgg
     2881 acggcgcccg gccgcaccgc cgcctgcatc gacgccgtcg cccttcagcg acccgttcgc
     2941 gagcgcgccg ccgccgcgcc agacggcacc cgacccgttc gcgcaagcac cgtccggccc
     3001 ggctcgcgcg ccgtccgatg cgcccgagac gatcggcatg ggcggctcgc cgctgctggt
     3061 ggccgcgggg ccactgctgc aattgctggc ccggctgcgc aacacgctga acccgcccga
     3121 tgccggggat ttgcgcgagc gcgcggtgcg cgagatgcgc cgtttcgagg aaagcgtgcg
     3181 ggcgcagaat ttgccgatgg aacagctccg cccggcccat tacgcgctgt gcgccagcct
     3241 cgatgacgtg gtgctggcga caccctgggg cgcgcagggc gcctgggccg cgcactccat
     3301 ggtgtccacc ttccaccagg aagtgcgctc gggcgagcgc ttcttcgata ttctcaacca
     3361 gctcaagcag aatcctggca atttcctgcc ggtgctggag ctgatgtatt tctgcctgtc
     3421 gctcggctat atgggccgct accggctttc gccgcgcggc ccggccgaga tcgaccagct
     3481 gcgcgaggaa acctacgccg tcatccgccg ccagcgcccg gccggggagg cggcactctc
     3541 gccgcattgg caaggggtga acgcgcccta ccgcgcgcgg cgcttccatg tgccggtgtg
     3601 gggcgcgggc attgccgccg tgggcgtgct ggcgctgctt tatggcgcct atctcttctc
     3661 gctcagcggc aagtcggacg cgcagttcga ggtgctgctc acagcacccc ctaccccgat
     3721 gccggccatc acccgcgccg cgccggtggt ggccccggcc gagccggcac ctgtgggccc
     3781 gaccattctg gaccggctct ccggtttcct cgcgcccgaa atcgccgccg gcaaagtgag
     3841 cgtggtcggc accgtgttcg cgcccatcgt gcgcatcaac aaccagggcc tgttcgcctc
     3901 cggcagcgcc gcggtggaga gcggcgatat cccgctgctg cagaaaatcg gcaccgcgct
     3961 ggggcgcgag accggcacgg tggtggtgac cggctatacc gacaaccagc cgatcaacac
     4021 gctgcaattc ccgtccaatt tcgagctttc caacgcgcgc gcgcaggccg ccgcgaccct
     4081 cctcgaccag tcgatcggcg atgagagccg cgtgaccgcg aagggcatgg gccaggccga
     4141 cccggtggcg gataattcca ccccggccgg ccgcgcgcaa aaccgccgta tcgaaatcgt
     4201 gctgaaccac ccgaccggaa cctgagggca atatgcacaa gatttttggc tttctgctct
     4261 cacgctgggt gctgagcttc gttttcgttg ccattctagt ggcgttggtg tggtatttcg
     4321 cgcccttcat cccggcactc gcgggcctgt tgccgcgcgc gctcattatt gttgcgctgt
     4381 tcgctgtctg gctggcggtc aacctgctgc tgtcgctgcg gcgcaagcag cgtgaggatc
     4441 tgctgaccat cggcatagcc ggccccggtg ccggcccgag tgccgccgac gaagagctgg
     4501 cggcaatggc cgagaagctc aaaacctcgc tggcgttgct gaagaaggcg cggggtacgc
     4561 gtggctatct gtacgagcag ccctggtacg tcatcatcgg cccgccgggt gccggtaaga
     4621 ccaccgcgct gctgaatgct gggctgaaat ttccgctggc agccgagctg ggtcagggtg
     4681 cggtagccgg cgtgggcggc acgcgtttgt gcgattggtg gttcaccgaa aacgccgtgc
     4741 tgatcgacac ggccgggcgc tataccacgc aggattccga tgccggagtg gacaaggccg
     4801 gctgggaagg cttcctcgat ttgctcaagc gcacgcgcca gcgccaggcg ctgaatggcg
     4861 tggtcgttgc catctcgctc gccgacattg ccagcgcacc gcgcgaggag cggcttgccc
     4921 atgcgcgcgc catccgcaag cgcatcaagg acctcaccga acggctgaca ctgaaactgc
     4981 cggtctatgc gctgctgacc aaggccgacc tcatcgccgg cttcaccgaa tttttcgacg
     5041 atctcgatgc cgaaaagcgc ggccaggtat ggggcacgag ctttgccgca aatgccgcca
     5101 atcctgtgac cggctttgcg gaagaattca ccgcgctgac gaagcgcctc gatgaccggc
     5161 tgctggattt gatgcagcgc gagcgcagcc cggaccggcg cgccatgatt accggcttcc
     5221 cggcgcaatt tgccagcctg caggcgccgc tgacggaatt cctcaatgag gcgttcggcg
     5281 gctcgacgct cgacccggcc ccttatctgc gcggcgtcta tttcgcctcc ggcacgcagg
     5341 aaggcac
//
LOCUS       DASQCV010000240         2951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1713642, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000240 DASQCV010000000
VERSION     DASQCV010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1713642"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2768
                     /locus_tag="VEQ16_03645"
     CDS             <1..2768
                     /locus_tag="VEQ16_03645"
                     /inference="COORDINATES: protein motif:HMM:NF024795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Hint domain-containing protein"
                     /protein_id="HYP62950.1"
                     /translation="TITGSLTDTGPATGTGTLVVAQGATATLGTASSIHSVFDYGTLD
                     LLGAMAGSINMEGNGAGSAVEFNTLNPSATITNFGLADTIVLASSLFTGQKAGTTLSL
                     TGYSSKDVLTVTETLAAGGTQTDKITISGASNLALASFTQVTTSSGVEIELVPSNFTF
                     TTTGSFENAAGYSGGVAPGDIIVSGETITIASGTATVTGEVLSNSGLITIASGADFID
                     TNTISGTGALIIGAGGTASLIGNTSLGSITDNGTLILGGTVTGPITIAGSASVTGSLV
                     DTGSLSGSGTFTVGSGNAATLTGGAAVTNIADNGSLVVAGSVSSNITGTGTLATTGGA
                     SATLSGTDSAGTLADNGTLTVTGSLTDTGIASGTGTLAVAPGATVTLAAGSSIADIID
                     NGTLIIAGSVSSSITGSGTLMVAGGKTATLSGTDSLTGTLADAGTLIVTGSLTDSGAA
                     TGAGTLSIASGGFVTLAGGSSITTITDSGDLVAGGSVSSAISGIGTLGVLSGTSATLA
                     ATDSIGTLADNGTLTVTGSLTDTGIASGTGTLAVATGGSATLAGNTTLGSIIDNGSLT
                     ASGVFSTPITMGAGAQLAINGNFSDSDPITGLGTLTVDHGIIVTLAAGSSFAAVNDYG
                     TLDLLGSLTTPINLGGNNTGSIIEFTGTDVTNGTLDTAITSFGYGDTIVLGSADFALN
                     GSSDKLHESYNSSNGQLTITDSTSGAHVTLDLNLPAGDNTAALRVNDAGGQLEITLCF
                     YPGTALATPKGEVKVEDIKAGDLLLTANGAKPVRWIGQSHIHTRFADPLRALPIRIRQ
                     GALGNGLPSRDLLLSPDHAICIDGILVQASALVNGTNIVREHDVPAQFTYYHVELDSH
                     ELLLAAGVQAESFVDNVDRMHFHNWDDRTAPDNPIVEMDLPRAKSSRQVPQAIRRRLG
                     ISQIAVA"
     gene            2856..>2951
                     /locus_tag="VEQ16_03650"
     CDS             2856..>2951
                     /locus_tag="VEQ16_03650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase"
                     /protein_id="HYP62951.1"
                     /translation="MTRYAELSRKTSETDISLRIDLDGTGKTDIET"
BASE COUNT          547 a         1096 c          854 g          454 t
ORIGIN      
        1 ttaccatcac cgggtccctg accgataccg gccccgccac gggcaccggc accctcgtcg
       61 tggcccaggg cgccaccgcc acgctgggga cagcctcgtc gattcactcg gtgttcgatt
      121 acggcacgct ggacctgctc ggcgccatgg ccggcagcat caacatggag ggcaacggcg
      181 ccggctcggc cgtcgagttc aacaccctta accccagcgc cacaatcacc aattttggcc
      241 tggcggacac cattgtccta gccagcagcc tcttcaccgg ccaaaaagcc ggtacgaccc
      301 tgtcgctgac gggctactcc agcaaagatg ttctgaccgt taccgaaacc ctcgccgctg
      361 gcggcacgca gacggacaag atcaccatct ccggtgcttc caacctcgct ctcgcctcct
      421 ttacgcaggt gacgaccagc tcgggcgtcg agatcgaact ggtccccagc aactttactt
      481 tcaccaccac gggcagcttc gaaaacgcgg ccggctactc gggcggcgtt gcgcccggcg
      541 atatcatcgt cagcggtgaa accatcacca tcgccagcgg cacggccacc gtcacaggcg
      601 aggtcctatc caatagcggc ctcatcacca tcgcttccgg tgccgatttc atcgatacca
      661 acacgatctc cggcacgggg gcgctgatca tcggcgcggg tggcacagcc tccctcatcg
      721 gcaataccag ccttggcagc atcaccgata acggcacgct catcctgggc ggcaccgtca
      781 ccggccccat cacaatcgcc ggcagcgcct ccgtcaccgg cagcctggtg gatacgggct
      841 cgctttccgg cagcggcacc ttcaccgtgg gcagcggcaa tgccgccacc ctcaccggcg
      901 gcgccgccgt caccaacatt gctgacaatg gctcgctcgt tgtcgccggt agcgtctcca
      961 gcaacatcac cggcaccggc acgctcgcca ccaccggcgg cgcctccgcc acgctctccg
     1021 gtacggacag cgccggcacg ctggccgata acggcacgct caccgtcacc ggaagcctca
     1081 ccgataccgg catcgcgtcg ggcaccggca cgctggccgt cgcgccgggc gccaccgtca
     1141 ccctggccgc cggctcctcc atcgccgaca tcatcgataa cggcacgctg atcatcgccg
     1201 gcagcgtctc cagctccatc accggcagcg gcacactcat ggtcgccggc ggcaaaaccg
     1261 ccaccctttc gggcaccgac agcctgaccg gcacgctggc ggatgccggc accctcattg
     1321 tcaccggcag cctcaccgat agcggtgccg ccaccggcgc gggcactttg tcgatcgcct
     1381 cgggcggctt cgtcactttg gctggcggct catccattac caccatcacg gatagcggcg
     1441 atctcgttgc cggcggcagc gtctccagcg ccatttccgg cattggcaca ctcggcgtcc
     1501 tgagcggcac ctcagccaca ctcgccgcca cggacagcat cggcacgctg gccgataacg
     1561 gcacgctcac cgtcaccgga agcctcaccg ataccggcat cgcgtcgggc accggtacgc
     1621 tggccgtggc aacgggtggt tccgcaacgc tggcgggcaa caccacgctg ggcagcatca
     1681 tcgataacgg ctcgctcacg gccagcggcg ttttctcgac gcccatcact atgggcgcgg
     1741 gcgcgcagct cgccatcaac ggcaatttct ccgacagcga cccgattacc gggctgggta
     1801 cgctgacggt cgaccacgga atcatcgtga cgctggcggc cgggtcgagc ttcgccgcgg
     1861 tcaatgatta cggcaccctc gatctgctgg gctcgctcac cacgcccatc aatctgggcg
     1921 gcaacaacac aggctcgatc atcgagttca ccggcaccga tgtcaccaac ggcacgctgg
     1981 acacggcgat caccagcttc ggctatggcg acacgatcgt cctgggtagc gctgacttcg
     2041 ccctcaatgg cagcagcgac aagctgcatg agagctacaa cagcagcaac ggccagctca
     2101 ccatcaccga cagcaccagc ggcgcccatg tgacgctgga tctcaacctg ccggcaggtg
     2161 acaataccgc cgcgctgcgg gtgaacgatg ccggcggcca gctcgaaatc accctatgct
     2221 tctaccccgg cacggccctg gccacgccga agggcgaggt gaaggtcgag gacatcaagg
     2281 ccggcgacct gctgctgacg gcgaatggcg cgaagccggt gcgctggatc ggccagagcc
     2341 acatccatac gcgcttcgcc gacccgctgc gcgctctgcc catccgcatc cgccagggcg
     2401 cgctgggcaa cgggctgccc tcacgcgacc tgctgctctc gccggaccac gccatctgca
     2461 tcgacggcat cctggtgcag gcgagcgctc tggtaaacgg cactaacatc gtgcgcgagc
     2521 atgatgtgcc cgcgcaattc acctactacc atgtcgagct cgacagccac gagctgctgc
     2581 tggcggcagg cgtgcaggcg gaaagcttcg tcgataacgt cgaccgcatg catttccaca
     2641 actgggacga ccgcacggcg ccggacaacc cgattgtgga gatggacctg ccgcgcgcga
     2701 aatcctcgcg ccaggtgccg caggccatcc gccgccggct cggcatcagc cagatcgccg
     2761 tggcgtaagc ccggcatcag ccagaccgga aagggggtgg cgcgagccgc cccttctctt
     2821 ttgcgaaacc cgcagcattg ttgtaggcac ggcgcatgac acgttacgct gaactcagcc
     2881 gcaagacttc cgagacggac atctcgctgc gcatcgatct ggacgggacg ggcaagaccg
     2941 acatcgagac c
//
LOCUS       DASQCV010000241         1506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_884940, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000241 DASQCV010000000
VERSION     DASQCV010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_884940"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1506
                     /locus_tag="VEQ16_03655"
     CDS             <1..>1506
                     /locus_tag="VEQ16_03655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62952.1"
                     /translation="ISFAAQYGVDGQRIVDQGSPYTSMYALPLAHRSPAALDEVVAHL
                     GSYLFHELTTPLGLRLDHLRHDQEESDSAKGGPVTTPLRSLGTYAIWFPRGLLLRLAA
                     RQACRRLVEGWLASGDTEITPEVAAAVQAFLVRVQADPALDMEQLVQQIEAAAPGSLN
                     ELAVTPGEALTRLLATLEEQMIQSVAQDDPGNWARQAANRVREWVGAGVDANPEINDW
                     RKTRLNRALAQAAQKVADEWVKTLSQELYALMEYPGARLAAAESALNLLQKFFVSASQ
                     SLGAAIEKQAERSAQAWKHVETALEGCLNGGGGFRLFGSRSKTRQLRLFLDTLSGFAR
                     QRLAEEILWAVRYFYVGLGAKLAERGRDLGFCRQRLRHLQEQIESGPGEGDEDIALRL
                     SSDFTLARSPLPSTESFWEAIRQSATARVVLPDAEEDLERAAIRFLQSLTPQQWVNLD
                     KELHERILAHRGGLNGACTQSGDLSRMLAVPLMTEAIQILSEHLPIMDVAQI"
BASE COUNT          275 a          493 c          462 g          276 t
ORIGIN      
        1 atttccttcg ccgcccaata cggcgtggac gggcagcgca ttgttgacca gggaagtccc
       61 tacacctcca tgtatgctct gcctttggca caccggagcc cggcggcgct ggacgaagtg
      121 gtcgcccatc tgggcagcta cttgttccat gaattgacca ctccactggg actgcgcctg
      181 gaccatttgc gccacgacca ggaagaaagc gattcggcca aaggcgggcc cgtgaccact
      241 ccgcttcgca gcctggggac gtatgctatc tggtttccac gcggcttgct gttgcggttg
      301 gcggcgcggc aggcctgccg ccgcctggtc gagggctggc tggcttcggg ggatacggag
      361 atcactccgg aagtggccgc cgccgtccag gctttcctgg tgcgagtcca ggccgatccc
      421 gcactggata tggagcaact ggttcagcaa atcgaagccg cggcgcctgg ttccctcaac
      481 gagctggccg tcactcccgg cgaggccctc acccgcctgc ttgccaccct tgaggaacaa
      541 atgatccagt ccgtcgctca ggatgatccg ggaaactggg cgcggcaagc tgccaaccgg
      601 gttcgcgagt gggtcggcgc cggcgtcgat gccaatccgg aaataaacga ctggcgcaag
      661 acgcgcctca atcgcgcgct cgctcaagcg gcccagaagg ttgccgacga atgggtcaaa
      721 acactcagcc aggaactata cgccttgatg gaatacccgg gggcgcggct ggcggccgct
      781 gaatccgccc tgaacttgtt gcagaaattt ttcgtctccg ccagccagtc tctgggcgcc
      841 gccatcgaaa agcaagccga gcgctcggcc caggcctgga aacatgtgga aaccgcgctg
      901 gaaggctgcc tgaacggcgg cgggggcttt cgcctgttcg ggagccgctc caagacccgc
      961 cagctacgcc tgtttctcga caccctgtcc gggttcgcac gtcagcgcct ggcggaggag
     1021 attctctggg cggtccgtta tttctatgtg ggtttgggcg ccaaactggc cgagcgcggc
     1081 cgcgatctcg gcttctgccg ccaacgcctt cgccatctac aagaacagat cgaatccgga
     1141 cccggcgaag gcgacgagga catcgcgctc aggctcagct ccgacttcac tctggcccga
     1201 tctcctttgc ccagcaccga atccttttgg gaagccatcc ggcagtcggc cacggcacga
     1261 gttgtcctgc cggacgcgga agaagatctg gaacgcgccg ccatccgctt cttgcaaagt
     1321 ctcactccgc agcagtgggt caacctcgat aaagagctgc acgagcgtat tttggcgcac
     1381 cgcggcggct tgaacggcgc ctgcacgcaa agcggcgacc tgtcgcgcat gctcgccgtt
     1441 cctctcatga ccgaggccat tcagattctg agcgaacacc tgccgatcat ggacgtggcc
     1501 cagatt
//
LOCUS       DASQCV010000242         2393 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2211444, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000242 DASQCV010000000
VERSION     DASQCV010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2211444"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(314..>2393)
                     /locus_tag="VEQ16_03660"
     CDS             complement(314..>2393)
                     /locus_tag="VEQ16_03660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62953.1"
                     /translation="LYVSKGGKSVGCPALSGTIGEPTPPGTYCIRHQGEAQTRGGLKG
                     MLFQDRPHWFLLEPQFATTRSRMMLHPGVMSSGCITVMDHGCFNQAAAALESGAGSSG
                     TGYDGYPPGNDEGVQNPKHDVTCATMLTVSGQIGSCGGTASSGTPPAQRTQELQRSPL
                     HETTPVLRRDTPPPPPAPAAAPAAPKSGDWLTLFPAASRDGTATPALTVELQKTQKDP
                     ILHDADKGGPAGPLKPEQTAARQQIIDARAALPPVKFTFGAFNGGFGYQYAGKTPEKP
                     SQLKADDKASADAKAAASAPQPDAGPTSPPDPASQRERDVRAAIFDELSQNEGKASGI
                     NAYDGAKLTLGPGIAMTGPLPDVLNNIFADPKTHEFFLKAGIEWSAGAFRIFNEANNA
                     IEQGASAMAMIQGRRDLLTAFVTAAESPDTAQTVVDAELPVIIQRINKLPAKIRTDWD
                     LDALRITFHLDYMASAWGVSAHPKEYLDTGGDIMRIVVTWGTLAAGKPEASGARMVSS
                     DGFKLAIPQFQKWGHGAAWTAITAACPVPIAIRREEVRDPKRTELKDLVLIRTLEAVK
                     DEPDGFYILPRPPVMAGGGAPASDKAYYALYELNGVPPTDQIPRIKHYAASDLAQLID
                     GWDHRGLAAAFGAALGYMLKAVQLTKTSKKPAKGPDTLVDNFLADAGFAAMEAKDADR
                     AKLIRGHLSR"
BASE COUNT          382 a          678 c          822 g          511 t
ORIGIN      
        1 tcagctttag agcggaagca agagccggcc atttgttcgg agttgaagcg ctctctgtag
       61 caaagattgc gcattagtat tggcgatgcg catgtcgcga cggatacgaa taagaatgat
      121 tcgaggagaa ctggcaaaat gaaatggtca atgtcgctgg cttggtcgca tcccagtacg
      181 aatgcgatgc gggctcatac tatatatagt aatcggcctt aggtgaggct gaagctgtcg
      241 caatacgttg cgtttacgga aaaataattg cgcggtaggg ttggaacatg gcctcggcgc
      301 ttgtgcttgc ccgctagcgc gacagatggc cccggatcag tttggcgcgg tccgcatctt
      361 tcgcctccat cgccgcaaat cccgcgtcgg cgaggaaatt gtccaccagc gtgtccggtc
      421 ccttggccgg ctttttgctt gttttggtca gctgcacggc tttcagcata tagcccagtg
      481 ctgcgccgaa cgcggctgct aggccgcgat ggtcccagcc atcaatcaat tgagccaagt
      541 cgctcgccgc ataatgtttg atgcgtggaa tctgatccgt gggcggcacg ccattcagtt
      601 catagagcgc gtaataggct ttatcggatg ccggcgcgcc gccgccggcc atgacgggcg
      661 gcctgggcag gatgtagaac ccgtcgggct cgtctttgac agcttccagc gtgcggatca
      721 gcaccagatc cttcaattcc gtgcgcttgg ggtcgcgcac ctcctcccgc ctgatggcaa
      781 tgggtacagg gcatgcggct gtaatggccg tccaggcggc gccatggccc catttctgga
      841 attgcggaat ggcgagcttg aagccatcgg aagagaccat gcgggcgccg ctggcctcgg
      901 gcttgcctgc ggccagcgtg ccccatgtga cgacgatgcg catgatgtcg ccaccggtgt
      961 cgagatattc tttgggatgg gcagacaccc cccaggcgga ggccatgtag tcgagatgaa
     1021 aggtgatgcg tagcgcgtcc aggtcccagt cggtgcggat tttggccggc agcttgttga
     1081 tgcgctggat gatgacgggc aattcggcgt cgaccacggt ctgcgcggta tcgggggatt
     1141 cggcggcggt gacgaaggcc gtgagcaggt ctctgcgccc ctggatcatc gccatggcgc
     1201 tggcgccctg ctcgatggcg ttgttggctt cgttgaagat gcggaaggcg ccggcggacc
     1261 attcgattcc ggccttgagg aagaattcat gggtcttggg atcggcgaag atattattta
     1321 gcacgtctgg cagcggcccg gtcatggcaa tgcccgggcc cagtgtcagc ttggcaccgt
     1381 cataggcgtt gatacccgag gctttgcctt cgttttgcga cagctcgtcg aaaatcgcgg
     1441 cgcgtacatc gcgctcgcgc tgggaggcgg ggtcgggcgg ggaggtaggg ccggcgtccg
     1501 gctggggcgc gctggcggcg gctttggcgt ccgcgctggc cttgtcatcc gccttgagct
     1561 ggctcggctt ttccggcgtc tttccggcat attgatagcc gaagccgccg ttgaaggcgc
     1621 cgaaggtgaa tttgaccggc ggcaaggccg cgcgcgcgtc gatgatctgt tgccgggccg
     1681 ccgtctgctc aggtttcagg gggcctgccg gaccgccctt atcggcatcg tgcaggatcg
     1741 ggtctttctg ggttttctgt aattcgacgg tgagagccgg tgttgcggtg ccatctctgc
     1801 tggccgcggg gaagagggtc agccaatcgc cggattttgg cgccgcgggt gcggcagcag
     1861 gggcgggggg tggcggcggg gtatcgcgcc gtagtactgg cgtggtctca tgcaacgggc
     1921 tgcgctgcag ctcctgagtt cgctgcgcgg gtggtgttcc cgaactggcc gtgccgccgc
     1981 aactgccgat ctgcccgctg accgtcagca ttgtggcgca ggtgacatcg tgcttcgggt
     2041 tctgcacgcc ctcgtcattg ccgggcgggt agccgtcgta gccggtcccg ctgctgcctg
     2101 cgccggattc cagcgccgct gccgcctggt tgaaacagcc atggtccatg accgttatgc
     2161 atcccgaact catcacccct gggtgcagca tcatgcggct gcgggtggtc gcgaattgcg
     2221 gctctagcag gaaccagtgg gggcggtcct ggaacagcat gcccttgaga ccgccgcgtg
     2281 tctgcgcctc gccttgatgg cggatgcaat acgtgccggg cggcgtgggc tcgccgatgg
     2341 tgccggagag cgccgggcag ccgacagatt taccaccttt gctgacatag agc
//
LOCUS       DASQCV010000243         3086 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_219588, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000243 DASQCV010000000
VERSION     DASQCV010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3086
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219588"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VEQ16_03665"
     CDS             complement(<1..319)
                     /locus_tag="VEQ16_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HYP62954.1"
                     /translation="MKLANPAPLGLFGFALTTWLLSMVNAGLLPAGTVPLVLAMAFAY
                     GGTAQFAAGLMEMATGNTFGFVAFCSYGAFWWSFALFVKFFGAGVPGAAVGWYLILWG
                     VFTF"
     gene            complement(421..1698)
                     /gene="hemA"
                     /locus_tag="VEQ16_03670"
     CDS             complement(421..1698)
                     /gene="hemA"
                     /locus_tag="VEQ16_03670"
                     /EC_number="2.3.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003870 - 5-aminolevulinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-aminolevulinate synthase"
                     /protein_id="HYP62955.1"
                     /translation="MHKFLVKCEEALAEISAQGRYRRFVALEKRTDRFPYYSVTMEGR
                     TRDILVWSTNDYLAMGTDPAVVEASIEAARLYGAGAGGTRNIAGSSPLHVALEQELAD
                     LHGKDAALLFTSGYVSNQASLSAILRSLPDWHVFSDEQNHNSMIVGIKDAREATVHIF
                     KHNDMADLERKLAAAPKDAPKLIAFESVYSMDGDIAPLKEICDLADKYEALTYLDEVH
                     AVGMYGAQGGGVSERDGVAHRITIIEGTLAKAFGCHGGYITGDFKVLDYIRSVAAGFI
                     FTTALPPPTVAAALTSIRTLRADNARRELLFNRAEMLKAKFAAAGLPVMKSASHIVPL
                     MIGDAAKATEVSMRLIREFGMYATPINYPTVPRGTERLRFTPGPSHTDEMMDELVIAL
                     RQILLTEDAALTAGPAAEKGAILTCPITGQRGS"
     gene            complement(1960..2391)
                     /locus_tag="VEQ16_03675"
     CDS             complement(1960..2391)
                     /locus_tag="VEQ16_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HYP62956.1"
                     /translation="MTLKSILKHKPAGYVAVAPDARVTDVLALLAEKHIGAVLVTDNG
                     KLVGILSERDVVRSLAHDGAATLEMTAAALMTKNPNTATPDFTVTQAMALMTEKRFRH
                     LPILEDGTLTGLVSIGDVVKAVIEQSQQEVETLRTYVAGAA"
     gene            complement(2564..>3086)
                     /locus_tag="VEQ16_03680"
     CDS             complement(2564..>3086)
                     /locus_tag="VEQ16_03680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HYP62957.1"
                     /translation="VSNSAVLIGADGAILLNYRKSHLFGDLDRAMFKAVGADFPIAEF
                     GGFKVGMLICYDIEFPEPARRLALAGADVILIPTAQMEPYEQVARHVLPARAYENQVY
                     TAYANHSGHDDGLSYVGLSSICGPNGAVLAMAGREEELLFAELSREHQKDVRAADPFF
                     TDRRPALYGALSS"
BASE COUNT          641 a          931 c          932 g          582 t
ORIGIN      
        1 agaaggtgaa cacgccccag aggatgagat accagcccac cgcggcaccc ggcacgccgg
       61 cgccgaagaa tttcacgaat agggcgaagc tccaccagaa ggcgccatag gagcagaagg
      121 cgacgaaacc gaacgtgttg cccgtggcca tctccatgag cccggcggcg aactgcgccg
      181 tgccgccata ggcaaaggcc atggccagca ccagaggcac ggtgccagcc ggcagcagcc
      241 cggcattgac catgctgagc agccaggtgg tgagcgcgaa gccgaataat cccaaaggcg
      301 ctgggttagc gagtttcatt agatcctccg gtcgattctg gttttgttaa gccgtgtgaa
      361 agacttggcg gattcttcac cgcaacgacc ttataaccta aatatctgcc ggagggtaaa
      421 ttaagagccc ctctgccctg taatggggca ggttaatatt gcccccttct ccgccgccgg
      481 acccgccgtc agcgccgcat cttccgtcag cagaatctgc cgcagcgcaa tgaccagctc
      541 gtccatcatc tcgtccgtat ggctcggccc gggggtgaag cgcagccgct ccgtgccgcg
      601 cggcacggtg ggatagttga tgggcgtggc atacatgcca aattcgcgga tcagccgcat
      661 cgagacctcg gtggccttcg ccgcgtcacc gatcatcagc ggcacgatat ggctggcgct
      721 cttcatcacc ggcagtccgg cggcggcgaa cttcgccttc agcatctcgg cgcggttgaa
      781 caggagttcg cgccttgcat tgtcagcccg cagcgtgcgg atggaggtga gcgccgcggc
      841 cacggtgggc ggcggcaggg cggtggtgaa gatgaagccg gcggcgactg agcggatata
      901 atccagcacc ttgaaatcgc cggtaatata gccgccatgg cagccgaaag ccttggccaa
      961 ggtaccttcg atgatggtga tgcggtgcgc caccccgtcc cgctcggaca cgccgccgcc
     1021 ctgggcgcca tacatgccca cggcatggac ttcgtccaga taggtcagcg cctcatattt
     1081 gtcggcgagg tcgcagattt ccttcaaggg ggcgatatcg ccatccatgg aatagacgct
     1141 ctcgaaggcg atcagcttcg gcgcgtcctt cggcgccgcg gccagcttcc gctccaggtc
     1201 cgccatatcg ttatgcttga agatatgaac cgtcgcctcg cgggcatcct tgatgccgac
     1261 gatcatggaa ttatggttct gctcgtccga gaacacatgc caatccggca gcgagcgcag
     1321 gatggcgctc aacgaggcct ggttggagac atagccggag gtgaagagca aagccgcgtc
     1381 cttgccgtgc aaatccgcca actcctgctc cagcgccaca tgcaaaggcg aggagccggc
     1441 aatattgcgc gtgccgcccg cgccggcgcc ataaagccgt gccgcctcga tggaggcctc
     1501 caccactgcc gggtccgtgc ccatggcgag ataatcattg gtcgaccaga cgagaatgtc
     1561 gcgcgtccgg ccttccatcg tcacggaata ataagggaaa cggtccgtgc gtttctccag
     1621 cgccacgaaa cggcgatagc gcccttgggc ggagatttcg gcgagcgctt cctcgcattt
     1681 gacaagaaat ttatgcatcc ggaccgttgt gtggcttgtt gggccaagaa aaacttgagc
     1741 caagaaaaac gccgctcggg gttaagagtc aatgacgtaa gtcaaattcc tgtgctgtag
     1801 cgccgcacag caaggctgcc aagcaaatag cgcattcata gcggcggcca tggacacagc
     1861 caggaccgcc agaaacgcaa atagattgtc aaaagctgcc gtcagacgcc cgcacggcaa
     1921 gctctacgcc ggagctgtca cctcaggctg agggtgcgtt caggccgcgc ccgccacgta
     1981 ggtgcgcagg gtctcgacct cctgctggct ctgctcgatc accgccttca ccacgtcgcc
     2041 gatactgacc agcccggtaa gggtgccatc ttcgagaatg ggcagatggc ggaagcgttt
     2101 ttccgtcatc agcgccatgg cctgcgtcac cgtgaaatcg ggcgtcgccg tgttggggtt
     2161 tttggtcatc agcgcggcgg ctgtcatctc cagcgtggcg gcgccatcat gcgcaaggct
     2221 gcgcaccacg tcgcgttcgc tcaatatgcc gacgagcttg ccattatccg tcaccagaac
     2281 agcgccgata tgcttctccg ccagtaaagc gagcacatcg gtgacgcgcg catccggggc
     2341 gaccgcgaca taaccggcgg gtttatgctt caggatactc ttcagcgtca tcggcttctc
     2401 tccaattttt tagtaatatg gagctttgcc cggtactgtg caaatcctat ttcgatagag
     2461 caatagatgt ttagattgat cctccagggt cgatctaagc gtctggaatt gcttgctcaa
     2521 acataaccat agagtcttca gctaaaagct gaagactcta tggttatgaa ctcagcgcgc
     2581 catagagtgc cgggcggcgg tccgtgaaga aaggatcggc cgcgcgcacg tctttctgat
     2641 gttcgcggct cagctctgcg aataataatt cctcttcccg tccggccatg gccaggaccg
     2701 cgccgttggg cccgcaaatg ctggacaggc ccacataaga aagcccgtca tcatggcccg
     2761 agtgattggc ataggcggtg tagacctggt tctcataggc gcgcgctggc agcacatggc
     2821 gcgccacctg ctcatatggc tccatctgcg ccgtggggat gaggatgaca tccgcgccgg
     2881 cgagggcgag gcggcgggcg ggttcgggga actcgatatc gtagcagatg agcatgccca
     2941 ctttgaaacc gccgaattcg gcgatgggga aatccgcgcc caccgccttg aacatggcgc
     3001 ggtcgagatc gccgaacaga tgggatttgc gataattcaa caggatggcc ccgtccgcgc
     3061 cgatgagcac ggcggaattg gacacg
//
LOCUS       DASQCV010000244         3261 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2542909, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000244 DASQCV010000000
VERSION     DASQCV010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3261
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2542909"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VEQ16_03685"
     CDS             complement(<1..248)
                     /locus_tag="VEQ16_03685"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0030259 - lipid glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP62958.1"
                     /translation="MKAMAHNPIVIAAGGTGGHFYPAEALAAELLLRGERVVLLTDAR
                     SGGLASPVFARAERYVISGAGLSGRGVKRAVQGAVALVR"
     gene            complement(245..1360)
                     /locus_tag="VEQ16_03690"
     CDS             complement(245..1360)
                     /locus_tag="VEQ16_03690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011631138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HYP62959.1"
                     /translation="MPGLSRADNSFIGKWWWSVDRVTMLGLAVLLGIGYVLALAAMPG
                     FTAHLSDPHTMAMIKQIFFLALGGGVIMGMSMLSLRQVKLTALGMGILFFLLTGFTLV
                     HGTEVDGANRWLELPGFTIQPSEFLRPAFIIISGWCIAEARRTPGFPGKRAALGVYLL
                     TALLLKMQPDIGMTFLFTMVVLAQFYLDGMDMKWIGVAAVTVVLALVYAFFFITHVHT
                     RVEMFLNPPPGSQAQTALEAFGNGGVWGLGPGEGQVKHWLPDARADFVFAVAGEEFGL
                     FFCAFIILVFAAIVLRALVRLLAENNLFVVLAGGGLVVAFGLQAFVNMASSLSLIPTK
                     GMTLPFISYGGSSALAISIQMGFLLALTRRRPKADLS"
     gene            complement(1348..2640)
                     /gene="murD"
                     /locus_tag="VEQ16_03695"
     CDS             complement(1348..2640)
                     /gene="murD"
                     /locus_tag="VEQ16_03695"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HYP62960.1"
                     /translation="MSIFSGKRFAVVGLGRAGMPAVLRLREWGAELVLWDDSAASRDT
                     AVGFAVARPSEAGGHFDGLVLSPGIPHRLPKPHPEAAWALSHGVPVLTDAELLYQAVR
                     ASGSKARFTGITGTNGKSTTTALLAHILTTAGVPNAAGANLGPAALSLPILPENGVYV
                     LEMSSYMLERIVTLRFDVAVMLNLSPDHLDRHGDMVGYAAAKREIFVRQDANCTAVIG
                     VDDAESRAMAVWLHTRPARVVEITGQGHETGAKALPGAHNAQNAAAAAAMARALGVDE
                     ATIAAGVKTFPGLPHRQQEVAQHNGVRFINDSKATNADASRWAMGCYEKFVWIAGGVA
                     KAGGIDELVPFFPRIEKAFLIGQDGPAFAARLSAAGVVNEVAGTLERAVPAAFAAAAQ
                     CGLVLFSPAAASFDQFANFEERGERFAALAREGATCRA"
     gene            complement(2637..>3261)
                     /gene="mraY"
                     /locus_tag="VEQ16_03700"
     CDS             complement(2637..>3261)
                     /gene="mraY"
                     /locus_tag="VEQ16_03700"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011251751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HYP62961.1"
                     /translation="PDLATTLAVPLFKNLLIPFGFLFPAVALFVMMGAANAVNFTDGL
                     DGLATVPTMIAAAVFALIAYLVGNKIFASYLELHFVPGVGELAVFLSALIGAGLGFLW
                     FNAPPAAVFMGDTGSLSLGGALGAVAVATKNEIVLAIVGGLFVVETISVIVQVFWYKR
                     TGRRVFLMAPLHHHFEKKGWAEPTIVIRFWIISMILGLVGLATLKIR"
BASE COUNT          744 a         1159 c          892 g          466 t
ORIGIN      
        1 cgcaccagtg ccaccgcgcc ctgtacggcg cgcttcaccc cgcgccccga aagcccggca
       61 ccggaaatca cataacgttc cgctcgcgca aacacaggcg aggccaaccc gccggagcgc
      121 gcatcggtca gcagcaccac ccgctcgcca cggagcaaca actccgccgc cagcgcctcg
      181 gccggataaa aatgcccgcc cgtgccgccg gcggcaatca cgatagggtt gtgtgccatc
      241 gccttcatga caaatccgcc ttgggccgcc tgcgcgttag cgccagcaaa aaacccatct
      301 gaatggagat cgccaaagcc gagctgccgc cataagagat gaacggcaat gtcatcccct
      361 tcgtcggaat cagcgacaag gaagacgcca tattcacgaa agcctgcagc ccgaacgcaa
      421 cgaccagccc gcccccggcc agcacgacaa acagattatt ctccgccagc agccgcacca
      481 gcgcacgcag cacgatggcg gcaaacacca gaatgatgaa agcgcagaaa aatagcccga
      541 actcctcgcc cgcgacggcg aacacaaaat ccgcgcgcgc atcaggcagc caatgtttta
      601 cctgcccctc gcccggcccg agcccccaca cgccaccatt gccaaacgcc tccaatgccg
      661 tctgcgcttg gctgcccggc ggcgggttga ggaacatttc cacgcgcgta tgcacgtgag
      721 tgatgaagaa gaacgcatag accagcgcca gtacaacggt caccgccgcc acgccgatcc
      781 atttcatatc catgccatcc agataaaact gcgccagcac gaccatcgta aaaagaaagg
      841 tcatgccgat atccggctgc atcttcaata gcagcgcggt gagcagatat acgcccaaag
      901 ccgcgcgctt gcccggaaag cccggcgtac gccgggcctc ggcaatgcac cagccagaga
      961 taataatgaa ggcagggcgc agaaattccg aaggctgaat cgtgaatcca ggaagttcca
     1021 gccagcggtt cgcgccgtcc acctcggtgc catgcaccag cgtgaatccg gtgagcagga
     1081 agaacaagat gcccatcccc agcgccgtca gcttcacctg gcgcagcgac agcatggaca
     1141 tgcccatgat cactccgccg cccagagcga ggaagaatat ctgcttgatc atcgccatgg
     1201 tgtgcgggtc ggacagatgc gcggtgaagc ccggcatcgc cgccagcgcc agcacatagc
     1261 cgatgcccag cagcacagcg aggcccagca tggtgacgcg gtcgacgctc caccaccatt
     1321 tgccgatgaa ggaattatcc gcgcggctca ggcccggcat gtcgcgccct ccctggccaa
     1381 ggcggcgaaa cgctcgccgc gctcctcgaa attcgcaaac tggtcgaagc tcgccgccgc
     1441 cggcgagaac aataccaggc cgcattgcgc cgccgcggca aaagccgccg gcacggcgcg
     1501 ctccagcgtg cccgcaacct cgttcaccac cccggccgcg ctcaggcgcg ccgcgaaagc
     1561 cgggccatcc tggccgatga ggaaggcttt ctcgatgcgt ggaaaaaacg gtaccagctc
     1621 gtcaatgcca ccggccttgg ccacgcctcc ggcaatccac acgaatttct cgtagcaccc
     1681 catggcccag cgcgatgcat cggcattggt cgccttgctg tcattgatga agcgcacgcc
     1741 attatgctgg gccacttcct gctgacggtg cggcaggccg ggaaatgtct tcacccccgc
     1801 cgcaatcgtg gcttcatcca cacccaaagc gcgcgccatg gcggcagcgg cggcggcatt
     1861 ctgcgcgtta tgtgcaccgg gcagcgcctt cgcgcccgtc tcgtgcccct gtcctgtgat
     1921 ttcaaccacg cgcgccggac gcgtatgcag ccagaccgcc atcgcccgcg actcagcgtc
     1981 atccacgccg atcaccgccg tgcagttggc atcctggcgt acaaaaatct cccgcttggc
     2041 ggcggcatag cccaccatgt ccccgtgccg gtccagatgg tcaggcgaaa gattcagcat
     2101 caccgcaaca tcgaagcgca atgttacgat tcgttccaac atatagctgg acatttccag
     2161 cacatacacg ccgttttccg gcagaatcgg caaactcagc gccgcaggcc cgagatttgc
     2221 ccccgccgca ttgggcacac ccgccgtggt gagaatatgg gccagcaagg ccgtggtggt
     2281 ggatttgccg ttggtgcccg taattccggt aaagcgcgcc ttagagccag aggccctcac
     2341 cgcctgatag agcagctctg cgtcggtcag cacgggcacg ccatgcgaca gtgcccaggc
     2401 cgcttcagga tgcggcttcg gcagcctgtg cggaataccg ggcgaaagca ccaggccatc
     2461 gaaatgccca cccgcctccg aaggccgcgc tacggcaaat cccacagccg tgtcacgcga
     2521 tgccgcggaa tcatcccata gaaccagctc cgcaccccac tcgcgcaaac gcagcacggc
     2581 gggcatccct gcccgcccca gcccgaccac cgcaaagcgt ttgcccgaga aaatgctcat
     2641 ctgatcttca aggtggccaa acccaccagc cccaaaatca tcgagatgat ccagaagcgg
     2701 atgacgatgg tcggctccgc ccagcccttc ttctcgaaat gatggtgcaa aggcgccatc
     2761 agaaacacgc gccgcccggt gcgcttgtac cagaatacct gcacgatgac ggagatggtc
     2821 tcaaccacga acaacccgcc gacaatggcg agcacaatct cattcttcgt cgccactgcc
     2881 acggccccca gcgcaccgcc gagcgagagc gagcccgtat cgcccatgaa caccgccgcc
     2941 ggcggcgcgt tgaaccagag gaagccaagc cccgcgccga taagcgcgga caagaacacc
     3001 gccagctcgc ccacgccggg gacgaaatgc agctccaggt aagacgcaaa aatcttgttg
     3061 ccgacgagat aggcgataag cgcgaacacc gccgcggcaa tcatggtcgg caccgtcgcc
     3121 agcccatcga gcccatcggt aaaattcacc gcattggccg cgcccatcat cacgaagagc
     3181 gccacggcgg ggaacaaaaa cccaaacggg ataagcaaat tcttgaacaa cggtacggcc
     3241 agcgtggtcg ccagatccgg c
//
LOCUS       DASQCV010000245         2019 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_718875, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000245 DASQCV010000000
VERSION     DASQCV010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2019)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2019)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2019
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_718875"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..788
                     /locus_tag="VEQ16_03705"
     CDS             <1..788
                     /locus_tag="VEQ16_03705"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP62962.1"
                     /translation="NLAVNARDAMPEGGHLTIETQNAMLDEVYAAAETDVRPGHYVMV
                     AVTDTGRGMTPDVAAQVFEPFFTTKPVGQGTGLGLAQVYGFIKQSNGHVKIYSELGEG
                     TTVKLYLPRLQGGEAPEHPAPPEALRYGEGHDETILVVEDEPAVREFAAEVLREYGYN
                     VLLAENALEAMPVIETDVRIDLLFTDVVLTGPMNGRQLAAEFAMRRGPVPVLFTTGYT
                     RNAIIHNGRLDEGIAFLGKPFSAAALAQQVRKMLDESKAVTVP"
     gene            complement(775..>2019)
                     /locus_tag="VEQ16_03710"
     CDS             complement(775..>2019)
                     /locus_tag="VEQ16_03710"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYP62963.1"
                     /translation="LARAPNGKLQFCAEDAPEAEEWVLEMARIPAGDFLDEIAAKGRM
                     TENMCRDLGDMVARLHDTAPVAQPENETGRIAHLIESIAANAQESGLEHARVRHWHDL
                     MHRQLRAQVDLISARAEAGRVRRVHGDLHLGNLCLWHGAVLPFDALEFDENLATIDTA
                     YDLAFLLMDLDLRAGRLAANRVFNRYLARSGDFTLLPLLPLFLSLRAMIRAQIRALQK
                     DPESETYLRLALQILHPVPSPVLAIGGLQGTGKSTLARALAPKLGPAPGALVLRSDEL
                     RKHQHKVAPETRLPDTAYLPAANTALNAALCAAAAEAAASGHGLIIDASFLSADLRAA
                     MERGIKGTGRAWLGLWLEAPLPVLTARLNQRTGDASDAGATVLRAAAGQDHGPISWHR
                     LNAENRERLASEARALIRATEP"
BASE COUNT          352 a          624 c          704 g          339 t
ORIGIN      
        1 tcaaccttgc cgtcaatgcg cgcgacgcca tgccggaggg cgggcatctc accatcgaga
       61 cccagaacgc aatgctggac gaggtttatg ccgccgccga gacggatgtg cggcccggcc
      121 attatgtcat ggtggcggtg accgatacgg ggcggggcat gacgccggac gtcgcggccc
      181 aggtcttcga gcccttcttc accaccaagc cagtgggaca gggcaccggg ctggggctgg
      241 cgcaggtcta tggcttcatc aagcaatcta acggccatgt gaaaatctat agcgagcttg
      301 gcgaaggcac gacggtgaag ctctatctgc cgcggctgca gggcggtgag gcgcccgagc
      361 accccgcccc gccagaggcg ctgcgttacg gcgaaggcca tgacgaaacc atcctggtgg
      421 tggaggacga gccagcggtg cgcgaattcg ccgccgaggt gctgcgcgaa tatggctata
      481 acgtgctgct ggccgagaat gcgctggagg caatgccggt gatcgagacg gatgtgcgga
      541 tcgacctgct ctttaccgat gtggtgctga cagggcccat gaatggacgg cagctggcgg
      601 cggaattcgc catgcgccgg gggccggtgc cggtgctctt caccaccggc tatacgcgca
      661 acgccatcat ccataatggc cggctcgatg agggcatcgc cttcctcggc aagcctttca
      721 gcgcggcggc cctggcccag caggtgcgca agatgctcga cgagagcaag gccgttacgg
      781 ttccgtagcg cggatcaaag cgcgagcctc gctggcgagg cgctcgcggt tttcggcatt
      841 gagcctgtgc cagctgatgg ggccatgatc ctgcccggcg gcggcgcgca gcacggtggc
      901 gccggcatcc gaggcgtcgc ccgtgcgctg gttcagccgc gccgtaagca cgggcaaagg
      961 agcttccagc catagaccca gccaggcgcg gcctgtgccc ttgatgccgc gttccatggc
     1021 ggcgcgcaga tcggcgctga ggaaactggc atcgatgatc agcccatgac cgctcgccgc
     1081 tgcctcggca gcggcggcgc acaaagccgc gttgagtgct gtattggcgg caggcagata
     1141 ggcggtatcc ggcaagcggg tttccggcgc caccttgtgc tggtgtttgc gcaactcgtc
     1201 gctgcgcagc accagcgcgc cgggggccgg gcccagcttc ggcgccaggg cgcgcgcgag
     1261 cgtggattta cccgtgccct ggagcccgcc aatggccagc acgggcgatg gcacgggatg
     1321 cagaatctgc agcgccaggc gcagataggt ttcactttcc gggtctttct gtaaagcgcg
     1381 tatctgggcg cggatcatgg cgcgcagcga gaggaaaagc ggcagcaagg gcaggagcgt
     1441 gaaatcgccg ctgcgcgcga gatagcggtt gaagacgcgg ttggcggcga ggcggccggc
     1501 gcgcagatcg aggtccatca gcaggaaggc gaggtcgtag gcggtgtcga tggtggcgag
     1561 gttctcgtcg aattccagcg cgtcgaaggg cagcaccgcg ccatgccaga ggcatagatt
     1621 gccaagatgc agatcgccat gcacgcgccg cacccggccg gcctcggcgc gcgcggagat
     1681 gagatcgacc tgcgccctga gctgcctgtg catgaggtca tgccaatgtc ttacgcgcgc
     1741 gtgttcgaga ccggactctt gcgcgttggc ggcgatgctc tcgatgagat gcgcgatgcg
     1801 gccagtttca ttctccggct gggccaccgg ggcggtgtca tgcaaacggg caaccatgtc
     1861 gccaagatcg cggcacatat tctcggtcat cctgcctttg gcggcaatct catcgagaaa
     1921 atcccctgct ggaatcctgg ccatttccag cacccattcc tccgcctctg gcgcatcctc
     1981 cgcgcaaaat tgcagcttgc cgttcggcgc gcgggcgag
//
LOCUS       DASQCV010000246         7936 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_56593, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000246 DASQCV010000000
VERSION     DASQCV010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 7936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7936
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56593"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..101)
                     /locus_tag="VEQ16_03715"
     CDS             complement(<1..101)
                     /locus_tag="VEQ16_03715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008851848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HYP62964.1"
                     /translation="MRILVVEDDKDVAGFVVKGLREAGHTVEHADNGR"
     gene            complement(104..1162)
                     /locus_tag="VEQ16_03720"
     CDS             complement(104..1162)
                     /locus_tag="VEQ16_03720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HYP62965.1"
                     /translation="MTKRLAVTALAFSLIPGLGSGLGGGAAHAQLSFASPPSSLAPLV
                     KQVAPSVVGIAVTEAPGSALPQPPVRTGHLPQPPIGQAAGSGFIISPDGMIVTNDHVI
                     AGAAQIIVTLNDGSRFPAKLAGADDLTDLAVIKITSSSPLIPARWGNSAKVQVGDWAL
                     AAGNPFALGNSFTLGIVSAEGRDIGDGPFTHFLQLDAPINPGNSGGPSFNMQGQVIGI
                     NSAIVSPSGGSVGVGFAIPSNDAVPIVTQLIAHGAIPRGWLGVGVADPPAGPNGPGQG
                     AVITGLEPGGPADKAGLTPGEVVLTVNGKPVSGADGLTRAIAGLQPGVKVVLGVSENA
                     HIFHTPVIVGRRPAQLGE"
     gene            1332..1670
                     /locus_tag="VEQ16_03725"
     CDS             1332..1670
                     /locus_tag="VEQ16_03725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62966.1"
                     /translation="MDDTEFSSETPDTETLKRDFAKLRASLDAVKDKLSDNTHEVLDR
                     VSAYLDKSSLGSRLDNIEDEISRLGSRLKESGRDAAAKLESEVSEKPLASVAIAFGIG
                     LLAASLLRRR"
     gene            1676..2077
                     /locus_tag="VEQ16_03730"
     CDS             1676..2077
                     /locus_tag="VEQ16_03730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62967.1"
                     /translation="MPLIRFASYALKSAALWGALATIVLCLVLAALAFLTAAIFIWLA
                     SHVGAAGAAAIMALALLLLALQIVLFGGLFLARLRARAPGLFEDTAGTIALLTSLATL
                     AVRRDPKRTLLLALVAGALTEYFATPDRPRS"
     gene            2177..3568
                     /gene="lpdA"
                     /locus_tag="VEQ16_03735"
     CDS             2177..3568
                     /gene="lpdA"
                     /locus_tag="VEQ16_03735"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HYP62968.1"
                     /translation="MAENFDVIVIGSGPGGYVCAIRAAQLGFKVACVEKRATLGGTCL
                     NIGCIPSKALLQSSENYDELVHHFKDHGINAGSISLDLARMQARKGEVVTANTKGIEF
                     LFKKNKITWIKGEAKFTAPGAIEVAGAAYTAKHIVIATGSDSIPLKGVEVDEKRIVTS
                     TGALELDKVPGHLVVIGGGVIGLELGSVWRRLGAEVTVVEFLDRITPGIDNEISKAFQ
                     QILTKQGFKFKLGHKVTGATVSGEQVTLTVEPAAGGTAETITADIVLLSIGRYAYTAG
                     LNLEAAGVATDERGRVKIDNHFATNVPGVYAIGDVVAGAMLAHKAEEEGVALAEILAG
                     QHGHVNYAAIPSVVYTWPEVATVGQTEEELKAAGIAYKVGKFPFLANGRARAMGTTDG
                     FVKLLAEKDTDKLLGAHIIGPDAGAVIAECVTALEFGASAEDVARTCHAHPTLSEAVK
                     EAALAVDGRPIHI"
     gene            3583..4302
                     /locus_tag="VEQ16_03740"
     CDS             3583..4302
                     /locus_tag="VEQ16_03740"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010666335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HYP62969.1"
                     /translation="MPGKIRLGVNIDHVATLRNARGGNHPDPLTVAKSLIGTGMDGIT
                     IHLREDRRHIRDADAEAICAWAGKPVNFEMAATSEMTAIATRLKPHGACVVPERRAEI
                     TTEGGLDVVNHRDALRPAIARLKDAGIRVSLFIDPESDQVQAAAEIGAQVVELHTGAY
                     ANGKLGELDRLRAAAALTTKLGLECHAGHGLTFANVQPIAALPEVVELNIGHFLMGEA
                     LLIGLPTAIAEMKRLMIEARL"
     gene            4439..5299
                     /locus_tag="VEQ16_03745"
     CDS             4439..5299
                     /locus_tag="VEQ16_03745"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002585097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HYP62970.1"
                     /translation="MRTSKIIKPQTIDLTDSTIFEGDALAVLQRLPADSVQCIVTSPP
                     YWGLRDYNFTDQIGLEPTLPQFLNKLRTIFTEARRVLRDDGIMWVNIGDGYTSGNRGW
                     RAPDKKNPARAMATRPNTPEGLKPKDLQGIPWRLAFALQDDGWYLRADIVWNKPNAMP
                     ESVKDRPTRAHEYLFMFTKSERYHYDRRAVIEPNGRNCRSVWNIHTQGFPGAHFATFP
                     PKLIEPCIKASSRPGDFVLDPFFGSGTAGVVAQSLGRRYIGIELNPEYVALAVERLRG
                     AETKIIRIAA"
     gene            5299..6267
                     /locus_tag="VEQ16_03750"
     CDS             5299..6267
                     /locus_tag="VEQ16_03750"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF021112.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009036 - type II site-specific
                     deoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="XcyI family restriction endonuclease"
                     /protein_id="HYP62971.1"
                     /translation="MINAPDPELQIDFAAALAEIRSRYLQDALGETVRTLCVPDIDKE
                     LAAYVPAHSLTALAGHGLRGEMIFPVPLILAANPRLLGYYRLLYGYSQKEFYTSKTQI
                     GRFKSMEERGILSASLSHHLPELCNAMCRAGTLLLAGIGTTKISAAFLDDLTLLTLGP
                     QLRGGANVRKGTAGIRLVFNVIQEIVQASVVQTNESRIEIKNAAGRTMFIEFAPDPDI
                     IIREEMKAESFRQLVAIEVKAGSDFSNIHNRIGEAEKSHQKAKASGFVECWTVVNVDN
                     IDVTMAHRESPSTNRFYRISALVAATGAEYEDFRDRVISLTGIPTA"
     gene            complement(6316..7191)
                     /locus_tag="VEQ16_03755"
     CDS             complement(6316..7191)
                     /locus_tag="VEQ16_03755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HYP62972.1"
                     /translation="MADDPYKTLGVARDATPEQIRAAYRKLAKKHHPDLNPGDKKAEE
                     AFKAASAANDILSDPEKRGRYDRGEIDGAGNEKGPAGGWRTGAGAAGFQGGFSGGFED
                     IFSNIFEQRARGPARGQDERYSLQVAFLEAVNGETKRITLPDGQGLDVKIPPGTSEGD
                     VLRLRGRGQPGRNGGPAGDALIEIHVAAHKFFRREGKNLHLELPISLKEAVLGGKVTV
                     PTPGGDVVMTIKPHSESGVEMRLRGRGVPAHGHAHAGDLHVKLNVVVGPVDEKLEEFL
                     RGWEQPGFNPRSGLG"
     gene            7400..>7936
                     /locus_tag="VEQ16_03760"
     CDS             7400..>7936
                     /locus_tag="VEQ16_03760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62973.1"
                     /translation="MVRFTLSPAAAKALAQYALLDVSATPPRGKNLVEDWFDTPGLTL
                     LRNGAALSLVKARRGFLQSLRRGEDSITVPISGPAPDLAAFPPEQAEPLAALLQDEPL
                     APVLTTRIKRLTRQAGAVELHFETGFIQTAEEKHPVCELELRGPGAALYRLALALQDE
                     HELLLQPVSLLQRGIWSTG"
BASE COUNT         1545 a         2690 c         2226 g         1475 t
ORIGIN      
        1 cgcccgttat cggcatgttc caccgtgtgc cctgcttcgc gcaggccttt caccacgaaa
       61 ccagccacgt ccttatcgtc ttcaacgacg agtatgcgca tcgtcattcc cccaattgtg
      121 ccggccggcg ccctacgatg accggtgtgt ggaatatatg tgcattttca ctgaccccaa
      181 gcactacctt aacgccgggt tgcaatcccg caatggccct cgtcaatcca tcggcaccgg
      241 aaaccggctt tccattcacg gtcagcacca cctcgcccgg cgtcaatccg gccttgtccg
      301 ccggtccgcc cggctccagc ccggtgatca ccgccccctg gcccggcccg ttggggcccg
      361 ccggcgggtc ggccacgccc acgcccagcc agccgcgggg gatggcgcca tgggcaatca
      421 gctgcgtaac aatcggcacc gcgtcattgc tcggaatcgc gaacccaacc cccaccgatc
      481 cgccggaagg cgagacaatt gctgagttta tccctatgac ctggccttgc atgttaaaag
      541 atgggccgcc cgaattgccc ggattgatcg gcgcgtcgag ctgcaggaaa tgggtgaaag
      601 gcccgtcacc aatatcccgc ccctcggccg aaacgatccc gagcgtgaat gagttgccca
      661 gcgcgaaagg attgcccgcg gccagcgccc aatcccccac ctgcaccttg gcggaatttc
      721 cccagcgcgc cggaatcaac ggtgaagatg acgttatttt aatgacagca agatcggtca
      781 ggtcgtcagc ccccgccaat ttcgccggaa aacggctgcc atcgttgagc gtgacaatga
      841 tctgcgccgc tccggcgatg acatggtcgt tggttacgat catcccgtcc gggctgatga
      901 tgaagcccga gcccgccgcc tggccgatgg gcggctgcgg caaatggcct gtccgcaccg
      961 ggggctgggg caaggcggag cccggcgcct cggtcaccgc gatgcccacc acgctcggcg
     1021 ccacctgctt caccagcggc gccagcgagg aaggcggact cgcgaaggag agttgcgcat
     1081 gggcagcgcc gccgcccaag cctgatccca ggcctgggat caggctgaag gccagcgccg
     1141 tcacggccag tctcttggtc acaatcttgc tcccatggcc tggcatagcg agcctgcgct
     1201 gtagagcgca agcgcccgcc cgcttgccag ccttatagcg cgtcctacat tgttaaattg
     1261 cctcgcggcc tgtattttag ggtcatatag aggtgcccgc ggcagttcga tcatcacagg
     1321 agacccagtc gatggacgat acagaattct cctccgaaac accggatact gagacgctga
     1381 agcgcgactt cgccaagctt cgcgccagcc tggacgccgt caaggacaag ctcagcgaca
     1441 atacccatga ggttctggac cgcgtctccg cctatctcga caaatccagc ctcggcagcc
     1501 ggctcgacaa tatcgaggac gagatctccc ggctcggcag ccggctcaag gagtccgggc
     1561 gcgacgctgc ggcgaaactg gaatccgagg tgtcggagaa gccgctcgcc agcgtggcca
     1621 tcgcttttgg catcggcctg ctcgccgcca gcctgctgcg ccgccgctag aacgcatgcc
     1681 gcttatccgc tttgccagtt atgcgctgaa gagcgccgcc ctatgggggg cgctcgccac
     1741 catcgtgctg tgcctggtgc tggcggccct ggccttcctc accgccgcca tcttcatctg
     1801 gctggccagc catgtcggcg ctgccggggc tgccgccatc atggcgctgg cgctgctgct
     1861 cctcgccttg caaatcgtgc tgtttggcgg gctgtttctg gccaggctgc gcgccagggc
     1921 gccgggcctg ttcgaggata cagccggcac catcgccctg ctcaccagcc tcgccaccct
     1981 cgccgtgcgg cgcgacccca agcggacctt gctgctcgcg ctggtcgccg gcgcgctcac
     2041 cgaatatttc gccacccccg accggccgcg cagctaaccc gcagccccgc cccgcgtcac
     2101 cccgcattgc ctgccatggc gtgcgcggct attgagcagg cgcctcgcaa tttcaaaccc
     2161 ttcagggagc tcagccatgg cggaaaattt cgacgttatc gtgatcggtt ccggccctgg
     2221 cggctatgtc tgcgctatcc gcgccgccca gctcggcttc aaggtcgcct gcgtcgagaa
     2281 acgcgccacc ctcggcggca cctgcctgaa tatcggctgc atcccctcca aggcgctgct
     2341 gcaatcctcc gagaattatg atgagctggt gcatcatttc aaagaccacg gcatcaatgc
     2401 ggggagcatc tcgctcgatc tcgcccgcat gcaggcccgc aagggcgagg tggtcaccgc
     2461 caacaccaag ggcatcgagt tcctgttcaa gaagaacaag attacctgga tcaagggcga
     2521 ggccaaattc accgcccctg gcgccatcga ggtggcgggc gcggcgtaca ccgccaagca
     2581 tatcgtcatc gccaccggct ccgattccat tccgctgaag ggcgtcgagg tggatgagaa
     2641 gcgcatcgtc acctccaccg gcgcgctgga gctggacaag gttcccggcc atctggtggt
     2701 cattggcggc ggcgtcatcg ggcttgagct tggctccgtc tggcgccgcc tcggcgccga
     2761 ggtcacggtg gtggaattcc tcgaccgcat cacccccggc atcgataacg agatttcgaa
     2821 ggctttccag cagatcctca ccaagcaggg cttcaagttc aagctcggcc acaaggtcac
     2881 cggcgccacc gtgagcggcg agcaggtgac gctcacggtc gagcccgccg cgggcggcac
     2941 ggccgagacc atcaccgccg acatcgtgct gctctccatc ggccgctatg cctataccgc
     3001 tggcctcaac ctcgaagccg ccggcgtggc cacggacgag cgcggccgcg tgaaaatcga
     3061 taatcatttc gccaccaacg tccccggcgt ctacgccatc ggcgacgtcg tcgccggcgc
     3121 catgctcgcc cacaaggcgg aggaagaggg cgtggctttg gccgaaatcc tcgccggcca
     3181 gcatggccat gttaactacg ccgccatccc ctctgtcgtg tacacctggc cggaagtcgc
     3241 caccgttggc cagaccgaag aggagctgaa agccgcaggc atcgcctaca aagttggcaa
     3301 attccccttc ctcgccaatg gccgcgcccg cgccatgggc actacggacg gcttcgtgaa
     3361 gctgctcgcc gagaaggaca cggacaagct gctcggcgcc catattatcg gacctgacgc
     3421 cggcgccgtc atcgccgaat gcgtcaccgc gctcgaattc ggcgcctcgg cggaagatgt
     3481 ggcccgcacc tgccatgccc accccaccct cagcgaggcg gtgaaggaag ccgccctcgc
     3541 cgtggatggg cgccccattc acatataatt tccatatctg acatgcccgg taaaatccgc
     3601 ctcggagtca atatcgacca tgtcgccacg ctgcgtaacg cgcgtggcgg caaccatcct
     3661 gacccgctga ccgtcgccaa atcgctcatc ggaacgggca tggatggcat caccatccat
     3721 ctgcgcgaag accgccgcca tatccgcgac gcggatgccg aggccatctg cgcctgggcc
     3781 ggcaagccgg tgaatttcga gatggccgcg acctccgaaa tgaccgccat cgccacccgc
     3841 ctgaagccgc acggcgcctg cgtggtgcct gagcgccgcg ccgagatcac caccgaaggc
     3901 gggctggacg tggtcaacca ccgcgacgct ctacgccccg ccattgcccg gctgaaagat
     3961 gccggcatcc gcgtctccct cttcatcgat ccggagtccg accaggtcca ggccgcggct
     4021 gaaatcggcg cccaggtggt ggagctgcac accggcgcct acgccaacgg caagctcggc
     4081 gaactcgacc gcctgcgcgc cgccgccgcg ctcacgacaa agctcggcct ggaatgccac
     4141 gccggccacg gcctcacttt cgccaacgtc cagcccatcg ccgccctgcc ggaagtggtg
     4201 gaactgaata tcgggcattt cctcatgggc gaggccctgc tcatcggcct gccgacggcg
     4261 attgcggaaa tgaaacgcct gatgatcgag gcgcggcttt aaaaagcttt cctaacttag
     4321 cctcatgccc aaccagcttg acagaatcgg cggtcaacga ttccaaatgc gatactggca
     4381 gcgggtggtc cccgggctgc ttgcccgaca atgtgagacc ggagggggcc gtttggctat
     4441 gcgaacaagc aagataatca aaccgcaaac catagacctc acagactcca ccatttttga
     4501 gggtgatgct ctggctgttt tgcagcggct tcctgccgat agtgtccaat gcatagtaac
     4561 atcgccacct tattggggac tgcgtgacta caactttact gaccagattg ggcttgagcc
     4621 aaccttgccg caatttctga ataaactacg tacaattttc actgaggcgc gacgcgtatt
     4681 gcgtgacgat ggcattatgt gggtgaacat cggagatggc tatacaagcg gcaatcgcgg
     4741 atggcgggcg ccggacaaaa aaaacccggc acgggcaatg gcaactcgcc caaatacgcc
     4801 ggagggacta aagccgaaag acttgcaagg tattccgtgg cgactggcct tcgcacttca
     4861 agatgatggt tggtaccttc gcgcggatat tgtgtggaat aagcccaatg caatgccgga
     4921 gagcgtcaag gaccggccta ctcgggccca cgaatacctg tttatgttca ccaaatctga
     4981 acgctatcat tacgaccgtc gcgcggtaat cgagccaaac ggccggaatt gccgctccgt
     5041 gtggaatatt cacacccaag gcttcccagg cgcccacttc gccacctttc cacccaaatt
     5101 aattgaacct tgcatcaagg cctccagccg ccccggtgat tttgtgcttg acccattttt
     5161 cgggtcagga acagcaggtg tcgtcgcgca aagcctaggg cggcgctata tcgggattga
     5221 actaaaccct gaatacgttg ccctggctgt cgagcgtcta agaggtgccg aaacaaaaat
     5281 tatccgcatc gcagcctgat gatcaacgca cccgaccccg aattgcaaat cgatttcgcg
     5341 gcagccctag ccgaaattcg aagccgttat ttgcaagatg ctctgggaga aactgtccgc
     5401 acgttatgtg ttcccgatat tgataaggaa ctagcggcct atgttccggc ccacagctta
     5461 acggcgctag cgggccacgg actgcgcggc gagatgatct ttcctgtccc tttaattctt
     5521 gctgcaaacc ctagactgct cggctattat cgcctgctct atggttatag tcagaaagaa
     5581 ttttacacct caaaaacgca aatcggccgc ttcaagagca tggaggaacg ggggattctg
     5641 tctgcctccc tcagtcacca tctaccggaa ctgtgcaacg ccatgtgccg tgccggcacg
     5701 ttgttgctgg caggaatagg aacgaccaag attagtgcgg cattcctcga tgacttaacg
     5761 ttgcttacgc ttggtcctca gctgcgtggc ggcgcaaatg tgaggaaagg aacggcggga
     5821 attcggttag tgttcaacgt gatccaagag atcgttcagg cgtctgtcgt tcagacgaac
     5881 gaatcacgaa ttgaaatcaa gaacgcagca ggacgaacga tgttcatcga gtttgcgcct
     5941 gatcctgata tcattattcg tgaagagatg aaggcagaaa gcttccgtca actcgtcgct
     6001 atcgaggtca aggctggttc cgatttttcc aatattcaca accgtattgg tgaagcggaa
     6061 aagagccatc agaaggcgaa agcgagcggc ttcgtagagt gctggactgt agtgaacgtg
     6121 gataatattg acgttacgat ggcccatagg gagtcaccta gtaccaacag gttttatcgc
     6181 atttccgccc ttgtggcagc cacaggagca gaatatgagg acttcagaga tcgcgtcatt
     6241 tcgttgaccg gcattccaac tgcatagcag acggagtggt accataatca agaactctcc
     6301 ctgggtttga tgtgcctatc ccaaccccga cctcggatta aaccccggct gctcccatcc
     6361 ccgcaaaaac tcttccagct tctcatccac cggccccacc acgacgttga gcttcacatg
     6421 caaatccccc gcatgcgcat gcccatgcgc cggcaccccg cgaccgcgta agcgcatctc
     6481 caccccgctc tccgaatgtg gcttgatcgt catcaccaca tcgccgcccg gcgtcggcac
     6541 cgtcaccttc ccgccgagca ccgcctcctt cagcgagatc ggcagctcca gatgcaaatt
     6601 cttgccctcg cggcggaaga atttatgcgc cgccacatgg atctcgatca gcgcatcccc
     6661 cgccggcccg ccattgcgcc ccggctgccc gcgcccgcgc aggcgcagca catcaccctc
     6721 gctggtaccg ggcgggatct tcacatccag cccctgccca tccggcaagg tgatgcgctt
     6781 ggtctcgcca ttcaccgctt ccaggaacgc cacctgcagc gaataacgct catcctgccc
     6841 gcgcgccggc ccgcgcgcgc gctgctcgaa gatgttcgaa aaaatatcct cgaacccgcc
     6901 cgaaaacccg ccctggaacc cagccgcccc ggcccccgtg cgccagcccc cggccggccc
     6961 cttctcattg cccgcgccgt ctatctcgcc ccggtcatac cgcccccgct tttccgggtc
     7021 ggatagaatg tcattggccg cggaagccgc cttgaacgcc tcctcggcct tcttgtcgcc
     7081 tgggttgagg tcaggatgat gcttcttcgc cagcttgcga taagccgcgc gaatctgctc
     7141 cggggtcgca tcgcgtgcca cgcccagcgt cttataaggg tcgtctgcca tgttcttgct
     7201 caagtgagtc caatacaagc catagatagg gtcagcgccg tgaccgcgac aaccgctatt
     7261 gtgcggccat gttgattccg catagtttcc tgatccggct tggcatggag ccgccagggt
     7321 gtttatcctg cgccggtagg atcacgcgaa agagatgatg gacgccccca gcataaccgg
     7381 tcttgttcaa cccgcggcaa tggtccgctt caccctctct cctgccgccg ccaaggcact
     7441 cgcccagtac gctttgctcg atgtttccgc cacgccgccg cgcgggaaaa acctcgttga
     7501 ggattggttc gacacgccgg gcctgacgct gctccgcaac ggcgccgccc tcagcctcgt
     7561 caaggcgcgg cgcggcttcc tgcaaagctt gcgccgtggc gaggacagca tcaccgtccc
     7621 catctctggc cccgcgccgg acctcgccgc tttccccccc gagcaggccg agccactggc
     7681 cgctctgctg caggacgaac ccctcgcccc cgtcctcacc acccgcatca agcgcctcac
     7741 ccgccaagct ggcgccgtgg agctgcattt cgagaccggc ttcatccaga cggcggagga
     7801 aaaacacccc gtctgcgaac tagaattgcg cggccccggc gcggcgctct accggctcgc
     7861 cttggcgctg caggacgagc atgagctgct gctgcagccg gtcagcctcc tgcagcgtgg
     7921 catctggtcc acgggc
//
LOCUS       DASQCV010000247         1644 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1715119, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000247 DASQCV010000000
VERSION     DASQCV010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1715119"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..273
                     /locus_tag="VEQ16_03765"
     CDS             16..273
                     /locus_tag="VEQ16_03765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012227840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin"
                     /protein_id="HYP62974.1"
                     /translation="MATPSHGSQHNGGNIMANHVYKKIELVGTSEVSVEDAVSTAIER
                     SSRTIRNLRWFEVTQVRGDIVNGKVSYFQVTMNVGFTLDEG"
     gene            complement(284..1210)
                     /locus_tag="VEQ16_03770"
     CDS             complement(284..1210)
                     /locus_tag="VEQ16_03770"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012974484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HYP62975.1"
                     /translation="MLLITRIMPEAVLARARAEHETRELCLQGPFNPQDVLDNINGVD
                     SILCVTTDKFDAALINVLPSSVKVIATSSVGVEHIDLDAAAARGIKICNTPDVLTEAT
                     AELTLLLMLMAARRAGEGERLLRAGQWKGLTPTFLLGRNVSGKSLGIFGMGRIGRAVA
                     RMARGLNMQIHYRNRNPLPPELEQGATYHADDASFLAKLDFLTITAPGGPSTLRWLNA
                     ERLALLKPGAVVVNSGRGTTVDDDALIAALRSGYVAAAGLDVFTNEPEIAPGYLELEN
                     AVLLPHIGSATVETRNAMGFLALDGIKAALAV"
     gene            complement(1288..>1644)
                     /locus_tag="VEQ16_03775"
     CDS             complement(1288..>1644)
                     /locus_tag="VEQ16_03775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008944929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HYP62976.1"
                     /translation="GIDELGVLLMGHAKGAYWYGSQLSIEEARALCPHNNATSLQVTS
                     AVLAGVIWAMENPRAGVTEADEIDHARVLEITTPYLGKMVGAYSDWTPLLARGVLFAE
                     DVDRDDPWQFKNFRVV"
BASE COUNT          308 a          466 c          568 g          302 t
ORIGIN      
        1 taggccgcca tgacgatggc aactccatcc catggcagcc agcataacgg gggaaacatc
       61 atggccaacc atgtctataa aaaaatcgag cttgtcggga catcagaggt tagcgtcgaa
      121 gatgccgtca gcacggcgat cgagcgctca agcaggacga tccgtaatct gcgctggttc
      181 gaggtgacgc aagtccgtgg cgatatagtg aacggcaagg tcagttattt ccaggtgact
      241 atgaatgtcg gctttacgtt ggatgagggc tgaatcgatc tggtcaaacc gccagcgctg
      301 ccttgattcc atcgagcgcc aggaagccca tggcgttgcg cgtctcgacc gttgctgagc
      361 cgatatgggg cagcagcacg gcattttcca attcgagata gccgggggcg atttcgggct
      421 cgttggtgaa gacatcgagc ccagcggcgg cgacatagcc ggagcgcagg gcggcgatca
      481 gcgcgtcatc atccacagtg gtgccgcggc cgctattcac caccacggcg ccgggtttga
      541 gcagggccag gcgctcggca ttcagccagc gcaaggtgct ggggccgcct ggggcggtga
      601 tggtgaggaa atcgagtttg gcgaggaagc tggcgtcgtc ggcatgatag gtggcgccct
      661 gctccagctc gggcgggagc gggttgcggt tgcggtaatg gatttgcatg ttgaggccgc
      721 gcgccatgcg ggccacggcg cggccgatgc ggcccatgcc gaaaatacct aagcttttgc
      781 ccgagacatt gcggccgagc aggaaagtgg gggtgaggcc tttccactgg ccggcgcgga
      841 gcaagcgctc gccctcgccg gcgcggcgcg cggccatcag catcagcagc agggtgagtt
      901 ctgccgtggc ttccgtgagc acatccggcg tgttgcagat tttaatgccg cgcgcggcgg
      961 cggcgtcgag gtcgatatgc tccacgccaa cgctggaggt ggcgatgact tttaccgagg
     1021 acggcaggac gttgatgagg gcggcgtcga atttatcggt ggtgacgcag aggatggaat
     1081 cgaccccgtt aatattgtcg aggacatcct gcggattgaa ggggccttgc agacaaagct
     1141 cgcgcgtttc gtgctccgcc ctggcgcggg ccagcacggc ctccggcatg atgcgtgtga
     1201 taagaagcat gaaagccccc tccctcctgg ttggcggggc ctttatagca aaggacacgg
     1261 gccggtctgc accggcccgc gcatggctca gacgacccgg aaattcttga attgccaggg
     1321 gtcgtcccta tccacatcct ccgcgaacag cacgccgcgg gcgagcaggg gcgtccagtc
     1381 cgaataggcg ccgaccatct tgccgagata gggagtggtg atttccagca cgcgggcatg
     1441 gtcgatctcg tccgcttccg tcactccggc gcgggggttt tccatggccc agatgacgcc
     1501 ggccagcacg gcggaggtta cctgcagcga ggtggcgttg ttgtgggggc agagggcgcg
     1561 ggcttcctcg atggaaagct gcgagccgta ccaataggcg cctttggcat ggcccatcag
     1621 cagcacgccg agctcgtcga tgcc
//
LOCUS       DASQCV010000248         2691 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2212690, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000248 DASQCV010000000
VERSION     DASQCV010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2212690"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..517
                     /locus_tag="VEQ16_03780"
     CDS             <1..517
                     /locus_tag="VEQ16_03780"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYP62977.1"
                     /translation="DLRDVILAGHSYGGMVITGAADRAADRVGHRVYLDAAYPRHDES
                     LLEHAGPMISAARQAGRVVNGVELVLFPDVGGPEFYGVTDPVQHGWAKQRLTPHPWKS
                     FEQKLQLTNEAAMRAIPESHLICTSTIPGRDMPLLTQRSQGRVWDIDTGHDLMLTEPA
                     WVAEKLALIAG"
     gene            621..1838
                     /gene="trpB"
                     /locus_tag="VEQ16_03785"
     CDS             621..1838
                     /gene="trpB"
                     /locus_tag="VEQ16_03785"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HYP62978.1"
                     /translation="MSDVIANSLRQGPDARGRFGEFGGRYVAETLMPLILELEAAYEA
                     AKADPAFQSELDYYLKHYVGRPSALWYAERLTRELGGAKIYFKREELNHTGAHKINNC
                     IGQILLAKRMGKTRIIAETGAGQHGVATATVCALFGLPCTIYMGAVDVERQKPNVFRM
                     KLLGAEVVPVSSGAATLKDAMNDAMRDWVANVRDTFYIIGTVAGPHPYPAMVRDFQCI
                     IGEEAKAQLMEAEGRLPDVAIAAVGGGSNAMGLFYPFLDEPSVKLIGVEAAGHGLDTD
                     QHAASLNRGRPGVLHGNRTYLLQDADGQIIEAHSISAGLDYPGIGPEHAWLHDIGRVE
                     YVGITDDEALAAFQLCTRTEGIIPALESSHAIAHIVKIAGKMDKDQIILLNLSGRGDK
                     DIFSVAKHLGAEL"
     gene            1835..2638
                     /gene="trpA"
                     /locus_tag="VEQ16_03790"
     CDS             1835..2638
                     /gene="trpA"
                     /locus_tag="VEQ16_03790"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HYP62979.1"
                     /translation="MSRIAGVFAELRKAERAALITFVEAYDPDRASSLALLSGMAENG
                     ADIIEIGMPFTDPMADGPTIQAAGRRGLLAGASLHGVLGLVEEFRRTNRHTPVVLMGY
                     LNPILSYGVEKFCEDAAKVGVDGLIVVDLPTEEADLLLPDAGKNGLDVIRLVAPTTSD
                     ERLPLVLEGSSGFVYYVSITGITGTRTASAADLARDIPRLRAATDLPIAVGFGIRTPE
                     QAALVAQHADAAIIASALIETMCRENLAAVLRDVRALADGIQGARKVAA"
BASE COUNT          480 a          812 c          919 g          480 t
ORIGIN      
        1 agacctgcgc gatgtcatcc ttgccggcca ctcttatggc ggcatggtca tcacaggcgc
       61 cgccgaccgc gccgcggacc gggtcggcca ccgcgtctat ttggatgccg cctacccgcg
      121 ccatgacgaa tcactgctcg aacatgccgg gccgatgatc agcgccgcgc gccaagccgg
      181 gcgggtggtg aatggcgtgg agctggtgct gttcccggat gtgggagggc cggaatttta
      241 tggcgtcacc gatccggtgc agcatggctg ggccaagcag cgcctcaccc cgcacccctg
      301 gaaaagcttc gagcagaagc tgcagctcac caacgaggcc gccatgcggg ccatcccgga
      361 aagccacctc atctgcacct ccaccatccc aggacgcgac atgcccctgc tcacccagcg
      421 ctcccaaggc cgtgtctggg acatcgacac cgggcacgat ctgatgctga ccgaacccgc
      481 ctgggttgcg gagaaactgg ccctcatcgc ggggtaagcc gagagagggc gcaaagcccc
      541 ctcgcctttt cgcgccaaat cccctgccca acccccgaga tggtctttat ccggccggaa
      601 ccatgggtta aagccggggg atgagtgatg tgattgcgaa ttccctgcgc caggggccgg
      661 atgcgcgtgg ccggtttggc gagtttggcg gacggtatgt ggcggagacg ctgatgccgc
      721 tgattctgga actcgaagcg gcttacgagg cggcgaaggc tgatccggcc tttcagagcg
      781 agctggatta ttatctgaag cattatgtcg gccggccgag cgcgctttgg tatgcggagc
      841 ggctgacgcg ggagcttggc ggcgcgaaga tttacttcaa gcgtgaagag ctgaaccaca
      901 ccggcgcgca caagatcaat aattgcatcg gccagatttt gctggccaag cgcatgggca
      961 agacgcggat tatcgccgag acgggcgccg gccagcatgg cgtggcgacg gcgacggtat
     1021 gcgcactgtt tggcctgccc tgcaccatct atatgggtgc tgtggatgtg gagcggcaga
     1081 agccgaacgt gttccgcatg aagctgctgg gcgccgaggt cgtgcccgtg agttccggcg
     1141 ccgcgacgct gaaggatgcg atgaatgacg ccatgcgcga ctgggtcgcg aatgtgcggg
     1201 acacgttcta catcatcggc acggtggcgg ggccgcatcc ttatccggcc atggtccgcg
     1261 atttccagtg catcatcggc gaggaagcca aggcgcagct catggaagcc gaggggcggc
     1321 tgccggatgt ggcgattgcc gcggtgggcg gcggctccaa tgcgatgggg ctgttctatc
     1381 ctttcctcga tgagcccagc gtaaagctca tcggcgtgga ggcggcgggg catgggctgg
     1441 atacggacca gcatgcggcc agcctcaatc gcggccggcc gggcgtgctg catggcaacc
     1501 gcacctatct gctgcaggat gcggacgggc agatcatcga ggcgcattcc atctcggccg
     1561 ggctggatta tccgggcatc gggccggagc atgcctggct gcatgatatc gggcgcgtcg
     1621 aatatgtcgg catcaccgat gacgaggcac tggcggcgtt ccagctctgc acgcgcacgg
     1681 agggcatcat tccggccctg gaatccagcc acgccattgc gcatatcgtg aaaatcgccg
     1741 gcaagatgga caaggatcag atcatcctgc tgaacctgtc cggccgcggc gacaaggaca
     1801 tcttctccgt cgccaagcat ctgggagctg agctatgagc cgcattgccg gtgtgttcgc
     1861 ggagctgcgc aaggctgagc gcgcggcgct gatcactttc gtggaagcct atgacccgga
     1921 ccgcgccagc tcgctggcgc tgctgagcgg catggcggag aatggcgccg acattatcga
     1981 aatcggcatg ccgttcaccg acccgatggc ggatggcccg accatccagg cagccgggcg
     2041 gcgcgggctg ctggcggggg cgagcttgca tggtgtgctc gggctggtgg aggaattccg
     2101 ccgcacgaat cgccatacgc ctgtggtgct gatgggctat ctcaacccga tcctgtccta
     2161 tggcgtggaa aaattctgcg aagatgcggc gaaggtgggg gtggatgggc tgatcgtggt
     2221 cgatctgccc accgaggaag ccgatttgct gctgcctgac gcgggcaaga atgggctgga
     2281 tgtgatccgg ctggtggcgc ccaccacttc ggatgaacgc ctgccgctgg tgctcgaagg
     2341 ctcctcgggc ttcgtttatt atgtgagcat caccggcata accggcacgc gcaccgccag
     2401 cgctgctgac cttgcgcgtg acattccgcg cctgcgcgcc gcgacggatc tgccgattgc
     2461 ggtcgggttc ggcatacgca cgccggagca ggccgccttg gtggcgcagc atgcggatgc
     2521 ggccatcatc gcttctgcgc tgatcgaaac aatgtgccgc gagaatctcg ccgccgtgct
     2581 gcgcgatgtt cgggcgctgg cggacgggat acaaggcgcg cgcaaggtcg cggcgtaacg
     2641 ccagcgccaa aggcgcaaac gtcttgctgc agctttttca aaaagcgcag g
//
LOCUS       DASQCV010000249         1693 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2045931, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000249 DASQCV010000000
VERSION     DASQCV010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2045931"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..642)
                     /locus_tag="VEQ16_03795"
     CDS             complement(<1..642)
                     /locus_tag="VEQ16_03795"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HYP62980.1"
                     /translation="MDISLLLKMAADAEPERAGLTCDGRNWTYAELWAAATGAAVEIA
                     ASGATHVALLDTGSEAAPIALIGAALAGVPYCPLNYRLADADLGALIARIEPAFIIGD
                     VERVAKLAPGGNHKVFARADFVKLAEQKAEPEREAGEGEGIAVQLFTSGTTAAPKAAI
                     LRHSNLVSYILGTVEFGGADPFEAALVSVPPYHIAGIAALLSSIYAMRRIILLP"
     gene            complement(696..986)
                     /locus_tag="VEQ16_03800"
     CDS             complement(696..986)
                     /locus_tag="VEQ16_03800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62981.1"
                     /translation="MKAGSKLKSAVCDTEVLLVKAPAEGVLSCGGAPMVAERGEKGTV
                     DAAFAEGTKMGKRYTDATGSIEALCIKPGAGSLALNGVALQLKDAKPLPSSD"
     gene            complement(1052..>1693)
                     /locus_tag="VEQ16_03805"
     CDS             complement(1052..>1693)
                     /locus_tag="VEQ16_03805"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYP62982.1"
                     /translation="RTGEAVELDNSLMSTAWWATGMSIIQALESGETPRARMPQSGAS
                     PGNPLMGNYTCADGGVINMCTLTPGPYFRDFFNHLGRPELADDPRFSDARTLMTNWRE
                     AAEIIVKEFASKPFAYWREHLRTYKGQWAPAQSILDLARDPQALANDMIVEVEVVDGG
                     PPMKIVRNPIQFNHEPVVTTRAPQASEHTETFLLELGLEWDKIEALKASGAIA"
BASE COUNT          292 a          551 c          543 g          307 t
ORIGIN      
        1 cggaagcagg atgatgcggc gcatcgcgta gatggagctg agcaacgccg cgatgccggc
       61 aatatggtaa ggtggcacgg ataccaaagc cgcctcgaac ggatcggccc cgccaaattc
      121 caccgtgccc agaatgtagg acaccaggtt ggaatggcgc aggatggccg ccttcggcgc
      181 cgccgtggtg cccgaggtga aaagctgcac ggcgatgccc tcgccctcgc ccgcctcacg
      241 ctccggctcg gctttctgct ccgccagctt cacgaagtcg gcgcgggcaa aaaccttgtg
      301 gttgccgcca ggcgcaagct tggccacacg ctccacatcg ccgatgatga aggccggctc
      361 gatgcgcgcg atgagcgcgc cgagatcggc atccgccagg cggtaattca gcgggcaata
      421 aggcacgccg gccaaagccg cgccgatgag cgcgatgggc gccgcctcgc tgcccgtgtc
      481 gagcagcgcg acatgggtgg cgccgctggc ggcaatctcc actgccgcgc ccgtggcagc
      541 cgcccacagc tcggcatagg tccagttgcg gccatcgcag gtgaggccag cgcgctcagg
      601 ctcggcgtca gccgccattt tcagaagcag agagatgtcc acaggctggg ttccttagag
      661 actgtttgaa aacagagact gtttgaaaac ggtctctagt cggaggaggg cagcggcttg
      721 gcatccttca gctgcagcgc cacgccattc agcgcgaggc tgccagcgcc gggcttgatg
      781 cataaagctt cgatggaacc ggtggcatcc gtgtagcgct tgcccatctt ggtgccttcg
      841 gcgaaggccg catccaccgt gcccttctcg ccgcgctccg ccaccatcgg cgcgccgccg
      901 caggacagca cgccctcggc aggcgccttc accagcagca cctcggtatc acacaccgca
      961 ctcttcagtt tcgatccggc tttcaaagtt tctctccgta tgtccgtatt ctcgtagtct
     1021 gatgcgtcag gttgttttgc tcgctctgcg ctcaagcgat ggcgccggac gccttcaggg
     1081 cttcaatctt atcccattcc agcccgagtt ccagcaggaa ggtttccgtg tgctcggaag
     1141 cctgcggggc gcgggtggtc accaccggct cgtggttgaa ctggatcggg ttgcgcacga
     1201 tcttcatcgg cggcccgcca tccacaactt ccacctcgac gatcatgtcg ttggccagcg
     1261 cctgcgggtc gcgggcgagg tcgagaatgc tctgcgccgg ggcccactgg cccttatagg
     1321 tccgcagatg ctcgcgccaa taggcgaacg gcttggacgc gaattccttg acgatgatct
     1381 cggcggcctc ccgccagttg gtcatcagcg tgcgcgcgtc ggagaagcgc gggtcgtcgg
     1441 ccagctctgg ccggccgaga tggttgaaaa agtcccggaa ataggggccg ggtgtaagcg
     1501 tgcacatatt gatcacaccg ccatcggcac aggtgtagtt gcccatcagc gggttgcccg
     1561 gagaggcgcc ggattgcggc atgcgggcgc gcggtgtctc gccggattcc agcgcctgga
     1621 tgatgctcat gccggtggcc caccaggcgg tgctcatcag cgaattatca agctccaccg
     1681 cctcgccggt gcg
//
LOCUS       DASQCV010000250         1623 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3206938, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000250 DASQCV010000000
VERSION     DASQCV010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3206938"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..629)
                     /locus_tag="VEQ16_03810"
     CDS             complement(174..629)
                     /locus_tag="VEQ16_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62983.1"
                     /translation="MDIQTIDNQYGQLQSQAQQTVSELQNLAQKLQAAAQAGDQNARE
                     WFLDLKSIALAIQAEQNQVANLLGALHNFAAAQAQQLPQSVPQTLPQTPWGGQPQYPQ
                     QPAYPQQGYYPQQQQPGGLLGELFNSGFGRAIVTGAGFGIGDDLINKIF"
     gene            complement(687..1421)
                     /locus_tag="VEQ16_03815"
     CDS             complement(687..1421)
                     /locus_tag="VEQ16_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HYP62984.1"
                     /translation="MSSPTLIGIPACTKLITGYVQHATPARYGAALMAESGAMPILIP
                     PEGDAMLPLLDRLDGVMFNGSPSNVAPVRYGADFDATPDDHDPDRDATTLPLIRAALE
                     RGMPILCICRGMQELNVTLGGTLFQEVHKIPGRMDHRGGEGEQRFAIKHDVTLSGELA
                     RIIGAETIAVNSLHGQAIDRLAPGLVVEGVAADGTIEAMRVKDAPGFNIAVQWHPEWE
                     VSSYADRKKLFNAFGEACKAYRAAKG"
     gene            complement(1427..>1623)
                     /locus_tag="VEQ16_03820"
     CDS             complement(1427..>1623)
                     /locus_tag="VEQ16_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Bcr/CflA family drug resistance efflux
                     transporter"
                     /protein_id="HYP62985.1"
                     /translation="QAHAGSASALFGTLQYSGGALAGLLVGVLANGTAQPMAFVMLAC
                     AFAALLSAWARPTLVFAPAE"
BASE COUNT          284 a          516 c          531 g          292 t
ORIGIN      
        1 cagattgttg agatggattt gccgcgcgcc aagtccaccc gccaggtgcc atccgccacc
       61 aaggcccgcc ttctggcccg cagtgcggcg gagcaggtca tcgccgcctg acgctcccct
      121 gccaaacctg cgaaaccgcc cggccctcgc gccgggcggt ttgcttttca gggtcagaaa
      181 attttgttga tcagatcgtc gccgatgcca aagccagcgc cggtaacgat ggcgcggcca
      241 aagccggaat tgaataattc gccgagcaag ccacccggct gctgctgctg cgggtaatag
      301 ccctgctgcg ggtaggccgg ctgctgcgga tattgcggct ggccgcccca gggcgtctgt
      361 ggcagcgtct gcggcacgga ttgcggcagt tgctgcgcct gggctgcagc gaaattatgc
      421 agcgcgccca gcaggtttgc cacctgattt tgctccgcct ggatggccag cgcgatgctc
      481 ttcaggtcca aaaaccattc ccgcgcattc tggtcgcccg cctgcgccgc cgcctgcagc
      541 ttctgcgcga gattttgcag ctcgctcacc gtctgctgcg cctgggattg gagctgcccg
      601 tactgattgt cgatggtctg aatatccatg atgaccctcc tctgacggag gggcatctag
      661 catggaaata gggcgggatt tcggcgtcag cccttggccg cgcggtaggc tttgcaggcc
      721 tcgccgaaag cgttgaacag tttcttgcgg tcggcatagc tcgaaacttc ccattccggg
      781 tgccattgca cggcaatatt gaaaccgggc gcatccttca cccgcatcgc ctcgatggtg
      841 ccgtccgccg ccacgccctc gaccaccaac cccggcgcca gccggtcgat ggcctggccg
      901 tgcagcgagt tcacggcgat ggtctcggcg ccgatgatgc gcgccagctc gccggacagg
      961 gtgacgtcat gcttgatggc gaaacgctgc tcgccctcac cgcctcgatg atccatgcgg
     1021 ccgggaatct tgtgcacttc ttggaacaag gtgccgccga gggtgacgtt gagttcctgc
     1081 atcccgcggc agatgcacaa aatcggcatg ccccgttcca atgcggcgcg gatcaacggc
     1141 agggtggtgg cgtcacggtc cggatcatgg tcgtcgggcg tggcgtcgaa atccgcgcca
     1201 tagcgcactg gggccacgtt ggagggcgag ccgttgaaca taacgccgtc cagccggtcc
     1261 agcagcggca gcatggcatc accctcgggc gggatgagga tgggcattgc gcccgattcg
     1321 gccatgaggg cggcaccata acgcgccggg gtggcgtgct ggacatagcc cgtgatgagc
     1381 ttggtgcagg ccggaatgcc gataagggta ggcgatgaca tgaacattac tccgcggggg
     1441 caaaaacaag ggtgggccgc gcccaggccg ataacaaggc ggcaaaagcg catgccagca
     1501 tgacgaaggc catgggttgc gccgtgccat tggccagtac gccgacgagc agcccggcca
     1561 gcgcgccgcc gctatattgc agcgtgccga acaaggccga ggcgctgcca gcgtgggcct
     1621 ggt
//
LOCUS       DASQCV010000251         2073 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_886442, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000251 DASQCV010000000
VERSION     DASQCV010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2073
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_886442"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            314..1057
                     /locus_tag="VEQ16_03825"
     CDS             314..1057
                     /locus_tag="VEQ16_03825"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYP62986.1"
                     /translation="MGELSAANLILFVSASFAASFVAGLAGFAFAIVAAAVWLHFLPP
                     AQSTVLIAAFGLIVQGWAVWKLRQAIRPLRLAPFLIGAVIGVPLGAQLLRWASPGSLR
                     FGIGVVLVAFSLYSLIRPRLPTASEAGRFTDAMVGTLNGMLGGATGFAGIVLTIWCTL
                     RGWPPPEQRAVFQPVGVFVFLLTALFLGGTGTIAPGTLSLFLIGLPAVALGTWAGLKL
                     FGRLDETGFRRVVLALLLASGVALLLHLR"
     gene            complement(1176..>2073)
                     /locus_tag="VEQ16_03830"
     CDS             complement(1176..>2073)
                     /locus_tag="VEQ16_03830"
                     /inference="COORDINATES: protein motif:HMM:NF033816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HYP62987.1"
                     /translation="VRAQLLEVDGVLVWADPISEGRTRVALDPLLREVASRGIWVSAH
                     PDVILKMGVKEVLYRTKHLGWGTDTHLYRGEAEVRQAFPARLLTGPRVLKQNRGNGGQ
                     GVWKVELVDGAGGTDPLVRVLHAQRGSVPEELPLDRFMGRCEGYFGWGGCIIDQPFQP
                     RLPDGMIRCYMGADRVAGFGHQHIKALIEPPPEGPDAPAAQPGPRVMHGPDAAPFQKL
                     RAKMETVWVPQMIDILGLDPAALPIIWDADFLYGPRDASGADSYVLCEINVSSCFAIP
                     DEAPAAIAKLTLARCRNAPQRS"
BASE COUNT          327 a          668 c          657 g          421 t
ORIGIN      
        1 cgcgcgcagc agcaaggttt tgcccgcgcc agatggtccc cgaacggcaa tacactcgcc
       61 cgccgccaaa gcgaatgacg ccggtttgag aatattcgtt cgcagagcgc gaacctgaag
      121 aagaggcgcg ccagtttgaa aagggggctc cggttctttg ggtacttcta gccgaggtgt
      181 ttggcagttg acagactttc ctgactgcac aacgatggta ttcaggtcac cggcaaccac
      241 cctccagctg taacaggcca agcgttgccc tatccccgcc gcgcctttcg cggcggcagc
      301 gatggggtgc gtgatgggcg agctttccgc cgccaacctg atcctgtttg tttcagccag
      361 ttttgccgcc tcctttgtcg cggggctcgc cggtttcgcg tttgcgattg tcgcggcggc
      421 ggtctggctg cacttcctcc ctccggcaca gtccaccgtt ctgatcgcgg cttttggcct
      481 gatcgtgcag ggctgggctg tctggaaatt acggcaggca atccgaccgt tgaggcttgc
      541 gccattcctg atcggcgcgg tgattggcgt gccgctcggc gcccaactcc tgcgctgggc
      601 ctcgccaggc agtttgcggt ttggcatcgg tgttgtgctc gtcgctttta gcctttacag
      661 cctgatccgt ccaaggctgc cgacagcgag cgaggccgga cgcttcaccg atgccatggt
      721 cggcaccctg aacggaatgc tcggcggagc gaccggtttt gccgggattg tcctcaccat
      781 ctggtgcaca ttgcgcggat ggccgccgcc cgagcagcgc gccgtgttcc agccggtcgg
      841 ggtgtttgtg tttctgctaa ccgcgctgtt tctcggcggc accggaacca ttgcccctgg
      901 cacactcagt ctattcctga tcggattgcc cgcagtggca ttaggaacat gggcgggcct
      961 caaattgttc ggccggctgg acgagactgg tttccggcgt gtggttttgg cgttgctgct
     1021 ggcctcgggc gtcgctctcc tgctccatct gcggtaggcc aaggggtccg tgccctcatt
     1081 gatatgcgca agcgccgcct taacgtcggc ggcgggcttg agcgcgtcca tgcgatgatt
     1141 ctcttcacgg gaacgtcctt ttccggatct gacgatcatg atcgttgcgg ggcgttgcga
     1201 cagcgggcca gtgtcagttt ggcgatcgcc gccggcgctt cgtccgggat cgcaaagcac
     1261 gaactgacat tgatttcgca caggacgtag ctatcggcgc ccgaagcatc gcgtggcccg
     1321 taaaggaaat cggcgtccca gatgatcggc agcgccgccg gatcgaggcc gagtatgtcg
     1381 atcatctgcg gcacccatac ggtttccatt ttcgcgcgca gcttctgaaa tggagcggca
     1441 tccggaccgt gcatgacgcg cggcccgggc tgcgccgcgg gggcatccgg tccttccggc
     1501 ggcggctcga tcagggcttt gatgtgctga tgcccgaagc cggcgacgcg gtccgcaccc
     1561 atatagcagc ggatcatgcc gtccggcagg cgcggctgaa acggctggtc gatgatgcag
     1621 ccgccccagc cgaaataacc ctcgcagcgg cccataaagc ggtcgagcgg cagctcttcg
     1681 ggaacgctgc cacgctgtgc atgtagcacg cgtacaaggg gatcagtgcc gcccgccccg
     1741 tccacaagct ccaccttcca cacgccctgc ccgccattgc cccggttctg cttcagcacc
     1801 cgcgggccgg tcagcagccg cgccgggaag gcctgacgaa cttccgcctc accccgatag
     1861 agatgcgtgt ctgttcccca gccgagatgc ttggtacggt agaggacctc cttgacaccc
     1921 attttgagaa tgacgtcggg atgcgcgctg acccagattc ccctggacgc cacctcgcgc
     1981 aggagcgggt cgagtgcaac gcgggtcctg ccctcggaga tcgggtcggc ccagacgagg
     2041 acgccgtcga cctcgagaag ctgcgcccgc acc
//
LOCUS       DASQCV010000252         1655 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2544290, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000252 DASQCV010000000
VERSION     DASQCV010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1655
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2544290"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VEQ16_03835"
     CDS             <1..330
                     /locus_tag="VEQ16_03835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HYP62988.1"
                     /translation="NAARILTPSGLIVNQCGVPFMQADELYETSVRRKQFFPHVTAYV
                     AAVPTYVGGYMTLGWAGKDASLTQLPVEVIAERAKASGIVGEYWSPHVHVASFWLPPY
                     IAKHLPK"
     gene            complement(499..1290)
                     /gene="rfbF"
                     /locus_tag="VEQ16_03840"
     CDS             complement(499..1290)
                     /gene="rfbF"
                     /locus_tag="VEQ16_03840"
                     /EC_number="2.7.7.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008890943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047343 - glucose-1-phosphate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate cytidylyltransferase"
                     /protein_id="HYP62989.1"
                     /translation="MIDNLRGTKAVILAGGRGTRIAEETDTKPKPMVEIGGRPIIWHI
                     MKMYAAHGITDFIICLGYKGEKIKDYFYNYNLYSADITVELRSGSTIHSTQAEDWRVT
                     LVETGLDTQTGGRLKRVRKYLADDELFCMTYGDAVSDIDITAELAFHRAHGKLATVAA
                     VRPLARFGALHIEGDTVDHFEEKPPGEAGLISGGFFVLNPKVLDLVAGDEMSWESVPM
                     ETLARQGELQAFRHTGFWQPMDTLRDKLGLEALAQSGKAPWMVWD"
     gene            complement(1280..>1655)
                     /locus_tag="VEQ16_03845"
     CDS             complement(1280..>1655)
                     /locus_tag="VEQ16_03845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62990.1"
                     /translation="AVISFCFMTAQNIEYRAIFLLLALPALVRLAGWRVEFLPLPWVV
                     VALLWEAVPRAALAGLIQPYYPTPLTFAFWLLREALWWWLMVELLAALLAFAAQKLTS
                     LAGAHIGNVRMQPQPTGPDHDR"
BASE COUNT          300 a          479 c          555 g          321 t
ORIGIN      
        1 aatgcggcgc ggattctgac gccgagcggg ctgattgtga accagtgcgg cgtgccgttc
       61 atgcaggcgg atgagctgta tgagacttcg gtgcgccgga agcagttttt cccgcatgtc
      121 acggcgtatg tggcggcggt gccgacttat gtcggcggct atatgacgct gggttgggcc
      181 ggcaaggatg cgtctctcac gcagctgccg gtggaggtga ttgccgagcg ggcgaaggcg
      241 tcgggcattg tgggcgaata ttggagcccg catgtgcatg tggcgagttt ctggctgccg
      301 ccatatattg ctaagcattt gccgaagtag gaatgaaaaa cccggctgga gtgatccagc
      361 cgggtttttt gtgtgcagac ggtccgtcat cgcgagcgca gcgcggcgat ccatctttcg
      421 tgacggaacc cggcaactcg tttgtggccc ggaagatgga tcgccgcgct gcgctcgcga
      481 tgacggattt ggcgggtctc agtcccacac catccacggc gccttgcctg attgcgccag
      541 cgcttccagt ccgagcttgt cgcgcagcgt gtccatcggc tgccagaagc cggtgtggcg
      601 gaacgcctgc agctcgccct gccgggccag cgtctccatc ggcacgcttt cccaggacat
      661 ctcgtcgccc gcgaccaaat ccagcacttt cgggttcagc acgaaaaagc cgccggagat
      721 gagcccggct tcgcccggcg gcttctcctc gaaatggtcg accgtgtcgc cctcgatatg
      781 cagcgcgccg aagcgagcca gcgggcgcac cgccgccacg gtggcgagct tgccgtgggc
      841 gcggtggaag gcgagttcgg cggtgatgtc gatgtccgac acggcgtcgc cataggtcat
      901 gcagaagagc tcgtcatcgg cgagatattt gcgcacgcgc ttcaggcggc cgccggtttg
      961 ggtgtcgagg ccggtttcca cgagggtcac gcgccaatcc tcggcctggg tgctgtggat
     1021 ggtggagccg gagcgcagct caaccgtaat gtctgcggaa taaagattat aattgtagaa
     1081 ataatctttg atcttctcac ccttatagcc gaggcagatg atgaaatcag taatgccgtg
     1141 cgcggcgtac atcttcatga tgtgccagat gatcggccgc ccgccgattt ccaccatcgg
     1201 tttcggtttc gtgtctgttt cctcggcgat gcgcgtgccc cggccgccgg cgaggatgac
     1261 ggctttggtg ccgcggagat tatcgatcat ggtccggtcc cgtcggttgg ggctgcattc
     1321 ttacgttgcc aatatgggct ccggcgaggg aggtcaattt ttgcgcggcg aaggcgagca
     1381 gtgccgccag cagctccacc atcagccacc accagagcgc ctcgcgcagc agccagaagg
     1441 cgaaggtgag gggggtggga taataaggct ggatgagccc cgccaaggca gcgcgtggca
     1501 ccgcctccca tagcagcgcc accaccaccc agggcagggg cagaaattca acccgccagc
     1561 ccgccagccg taccagagcg ggcaaagcga ggagcaggaa gatggcgcgg tattcgatat
     1621 tctgcgcggt catgaagcag aatgaaatga cggcg
//
LOCUS       DASQCV010000253         2909 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_57520, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000253 DASQCV010000000
VERSION     DASQCV010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2909
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57520"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1267
                     /locus_tag="VEQ16_03850"
     CDS             <1..1267
                     /locus_tag="VEQ16_03850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62991.1"
                     /translation="VFLPARIISYSFAGQNFVAVSDPVRNEYLLGTPPSPVKAALPPA
                     APKSKLGLMAGAGAAAVLLIGIGVFALMHPGKPAASPSTPSAPASTAAPAQNTQAQQA
                     AQQTAAQQAAEQAAAVKAAQEAAAQQAAAQAAAQQAAQEAAVKEAAEKAAQEAAAKAA
                     TQQAEQQAAAEAAEAAKEAAAAQAAQQAQEEAAAKAAKEQAAKEAAAKAAKEVAAKAE
                     AAKEEAAKESRAAELAAAAAAAQAQPAASAPNVTAEPSQPALADTADNLTAAANAAPA
                     AKSGQKEAAANSVPSAPENGLSGTNYEDFSSGKVRLAANGATNSQTAEALSTAATSHD
                     STALSKAVVQSASGNDLGYYYLGVAAQKQGLYDAARTYYQLSLQHSETDNPPAVCSPG
                     HRKTYQPALCHGIVLPSRAARALASLPGG"
     gene            complement(1307..2347)
                     /locus_tag="VEQ16_03855"
     CDS             complement(1307..2347)
                     /locus_tag="VEQ16_03855"
                     /inference="COORDINATES: protein motif:HMM:NF013293.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62992.1"
                     /translation="MEKLRVIQWTTGKVGRMALRAILDDPRLELAGVYAWSADKAGQD
                     AGALCGRPDCGVKATSDIDALISLKADTVIYAPFTADLEHAIRLLEAGLDVISTNLFL
                     NIGGIQGEVKEKLEAACRRGNSSFVVTGINPGWINAMVAGMTAICRRVDGVAVTESAD
                     CSVYESVETWTTLGMGLPEATPAIHKAAHDWMIMFRDTVFRMAEALDFEIDDTEFTAE
                     FAHASETVDLGWFRMEKGTIAAIRAGWSGRMGGRVVVRNQVIWYLTRKLVEDWAIDDE
                     QYLVEISGEPGVRARFRMTPPEHWTNNDWESMTALPAVSAAFNVKAAKPGVLGLKDMG
                     LVCAPAGTWLRG"
     gene            complement(2539..>2909)
                     /locus_tag="VEQ16_03860"
     CDS             complement(2539..>2909)
                     /locus_tag="VEQ16_03860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011631834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62993.1"
                     /translation="ELPRMYDLINDVRRTNVLVAPRRFSTLARRLYTLVAEVTEFSEK
                     LDNALQATGDVYLARIYAGALDLFRVHAISAAVDRKLAILRDTYSALHDEASSARGEL
                     LEILVVVLIAMEIVLPFLHK"
BASE COUNT          571 a         1022 c          842 g          474 t
ORIGIN      
        1 cgtgttcctg ccagcgcgaa tcatctccta cagcttcgcg gggcagaatt ttgttgccgt
       61 atcggaccct gtccgcaatg aatatctgct cggcacgccg ccttccccgg tgaaggccgc
      121 gctgccgccc gccgcgccca agagcaagct gggcctcatg gccggcgccg gggcagcggc
      181 ggtgctgctc atcggcattg gcgtcttcgc gttgatgcat ccgggcaagc cggccgccag
      241 cccgtccacg ccctccgccc ccgccagcac ggctgctccg gcacagaaca cccaggccca
      301 acaagccgcc caacagaccg cagcccagca ggccgctgaa caggcagccg ccgtcaaggc
      361 cgcgcaggag gccgccgcgc aacaggccgc agcccaggcc gcggcccagc aggccgcgca
      421 ggaagccgcc gtcaaggaag ccgccgagaa agccgcgcag gaagccgccg ccaaggccgc
      481 aacccagcag gccgagcagc aagccgccgc cgaggctgcc gaagccgcga aggaagccgc
      541 cgccgcccag gctgcgcagc aagcgcagga ggaggctgct gccaaggccg ccaaggagca
      601 ggcggccaag gaggctgcgg caaaagctgc caaggaagtg gctgcgaaag ccgaggccgc
      661 taaggaggag gctgccaagg aaagccgcgc cgccgagctg gctgccgccg ctgccgcagc
      721 gcaggcccag cccgccgcca gtgcaccgaa tgtcacggcc gagccctccc agcccgcgct
      781 cgccgacacg gccgacaatc tcaccgccgc cgccaatgcg gctcccgccg ccaaatccgg
      841 ccagaaggag gctgccgcca attccgtccc gtcagcaccc gagaacggcc tcagcggtac
      901 gaactacgag gatttttcct ccggcaaagt ccgtcttgca gcgaatggcg ccaccaacag
      961 ccagaccgcc gaggcccttt ccacggctgc cacctcacat gattcgacag ctctgtccaa
     1021 ggccgtggtg caatccgctt ccggcaacga tctcggctat tattatctcg gcgtggccgc
     1081 gcagaagcag ggcctctacg atgcggcgcg gacctattac cagctctcgc tgcagcatag
     1141 cgagaccgac aacccgcccg ccgtctgctc gccgggccac aggaagacct atcagcccgc
     1201 gctctgccac ggcattgtgc tgcctagccg cgccgcgcgc gctttggctt cgctgcccgg
     1261 cggttaaggg attaaccccg ggcgcattcc gcgcccggga aggcacctag ccgcgcagcc
     1321 aggtgccggc aggcgcgcag accagcccca tatccttcaa ccccaacacg ccgggctttg
     1381 ccgccttcac gttgaaggcg gcacttacgg cgggcagggc tgtcatcgat tcccaatcat
     1441 tattcgtcca atgttcgggt ggcgtcatgc ggaagcgcgc cctcaccccc ggctcaccag
     1501 atatttcgac gagatactgc tcgtcatcaa tcgcccaatc ctcaacgagc ttgcgcgtga
     1561 gataccagat gacctgattg cgcacgacga cccgcccgcc catcctgccg ctccagcccg
     1621 cgcgtatggc ggcgatggtg cctttctcca tgcggaacca gccgagatcg accgtttccg
     1681 aagcatgcgc gaattcggcg gtgaattccg tgtcgtcgat ttcgaaatcc agcgcctccg
     1741 ccatacggaa gaccgtatcg cggaacatga tcatccagtc atgcgccgct ttgtggatgg
     1801 cgggcgttgc ctccggcagt cccatgccga gcgtggtcca ggtctcgacc gattcataca
     1861 ccgagcaatc ggctgattcc gtcaccgcca ccccgtccac gcggcggcat atagccgtca
     1921 tccccgccac catggcgttg atccagccgg gattaatgcc ggtaacgacg aaagagctgt
     1981 tgccgcgccg gcaggccgcc tcgagctttt ccttcacctc gccttgtata ccgccgatat
     2041 tgagaaacag attggtgctg atcacatcca gccccgcctc aagcagccgg atggcatgct
     2101 ccagatccgc cgtgaaaggc gcgtaaatca ccgtatccgc ctttagcgag atcagcgcat
     2161 cgatatcgct cgtcgccttc accccgcagt ccggccggcc gcacagagcc cccgcatcct
     2221 ggccagcctt gtccgccgac caggcataga cacccgccag ctccagcctt ggatcatcca
     2281 aaatcgcccg caacgccatc cgtcccactt ttcccgtggt ccattggatc acccgcaatt
     2341 tttccatgtt tttgtcccct ccacagcgcg cggcttatac gccgcgctgt ttttgcgtcg
     2401 gtgagtaggg caggttttat cctaccgcac aagcggaggg ggagggaaga gagtttgtga
     2461 ttgccgattc agcgccgaaa gcgggtctag gctggccatg ggctgttggg tcacggcttc
     2521 gccggggaaa tatccatgtc acttatgcag gaatggcagc actatttcca ttgcgatcaa
     2581 caccaccacg agaatttcga gaagctcccc gcgtgcgctc gaagcctcat catgcaaagc
     2641 cgaataagtg tcacggagga tcgcgagctt ccggtcaacg gcagcactga ttgcgtgaac
     2701 gcgaaacaag tccagcgcgc cggcatagat gcgagctaaa tacacgtcgc cagtggcttg
     2761 caaggcatta tcaagttttt ccgagaattc ggttacttcc gcgaccagcg tgtacaagcg
     2821 gcgggccaaa gtggaaaagc ggcgcggagc gaccaggaca tttgtccggc gaacatcgtt
     2881 gatcaagtca tacattcgcg gcaattcgg
//
LOCUS       DASQCV010000254         2162 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1217935, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000254 DASQCV010000000
VERSION     DASQCV010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1217935"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VEQ16_03865"
     CDS             complement(<1..239)
                     /locus_tag="VEQ16_03865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62994.1"
                     /translation="MAGINGAAASAAVVRWLAPGRGTQRQIWRKRLFGGLGGGVVALG
                     GTGYAYNATTAAHYVETDDAYVGANSAVITPLYGGP"
     gene            376..978
                     /locus_tag="VEQ16_03870"
     CDS             376..978
                     /locus_tag="VEQ16_03870"
                     /inference="COORDINATES: protein motif:HMM:NF025605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP62995.1"
                     /translation="MRVKTENRRQAIIDAARAVFHEVGYERASMAGISARIGGSKATL
                     YNYFKSKEELFAAAMLEAIEEQGMPLLDLLTPEGTDLTKALREFGLAFVRFISMAKVL
                     SVVRTAIAEGAHSGLGAMLYVRGPQRAWQEIEARLAQLMKAGLLRQADPGIAALHLKA
                     LLEAGVLEPALYGAPPCLDEATSVGRAVEVFLAAYGAPAA"
     gene            1128..2018
                     /locus_tag="VEQ16_03875"
     CDS             1128..2018
                     /locus_tag="VEQ16_03875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62996.1"
                     /translation="MKIRQGLTGGAVLSLLVLKAQSAFAAATYPAAFDTAFGMPAPPR
                     DAPFSLPASLHASTVFVIIGLTVLAFAVRDARRAGTLLPVFVALSGVFCAIPEVFIDV
                     AGGCFWPYSDGQVVYSILGRPMTWYPICAWFGFGAVLAYVPYALFLRQAKVSWLWAGL
                     VAACLFDILVEEVMLNIPGLYVYYGHQPLILVTRFPAWWMFTNIPGVFLASALAWRFR
                     DELKGLRGAFMFMITPAAFLAVFGFAAMPASIVILGNSAWLPTQLGGVLTAALGLTAS
                     ALTIRLVLRRNPFRLSDVVG"
BASE COUNT          372 a          684 c          664 g          442 t
ORIGIN      
        1 gggccgccat aaagtggcgt gatgaccgcg ctgttcgcgc caacataggc gtcgtcggtt
       61 tccacataat gcgccgctgt cgtggcgtta taggcatagc ccgtgccgcc aagtgccacg
      121 acgccgcccc caaggccgcc gaacagccgc ttgcgccaga tctgacgctg cgttccgcgc
      181 ccgggtgcga gccaccttac caccgcggct gaagctgcgg cgccattgat gccggccatg
      241 aaagggtcct tttcgatatc cagagcagca gcctagccgc ttacaaaacc gtacagtatg
      301 gttatatggc aaaaccaatt gccttggtca atcgaaaacg ataccgtgcg gttcaaaata
      361 ggaagaatgg caaatatgcg tgtgaagaca gaaaaccgcc gccaagcgat catcgacgcc
      421 gcccgagccg tttttcacga ggtgggctac gagcgggcga gcatggccgg gatttccgcg
      481 cgcattggcg ggtccaaggc gaccctgtac aactacttca aatccaagga ggaattattc
      541 gccgccgcga tgctggaagc gatcgaggag cagggaatgc cgctgctcga cctgctcacc
      601 ccggaaggaa ccgacctgac caaggccctg cgggaattcg ggctggcctt tgtgcggttc
      661 atctccatgg ccaaggtgct gtcggtcgtg cgcaccgcca tcgcggaggg agcgcattcg
      721 ggccttggcg ccatgctgta tgtgcgcggc ccgcaaagag cctggcagga aatcgaggcc
      781 cggctggcac agctcatgaa ggccgggctg ctgcggcagg ccgatcccgg tatcgccgcc
      841 ctgcacctca aggcattgct ggaggcagga gtgctggagc cggccctata cggcgcgccg
      901 ccctgtctgg atgaggcaac cagtgtcggc cgcgcggtgg aagtgttcct cgccgcctat
      961 ggcgcgccgg ccgcctgacg ccgccctggc ccacataccg gctgattcaa ttttgaaccg
     1021 taccgtatag ttttattgac caatgaaggc tctatcgaat ataaccatac cgtacggtta
     1081 cattccggcg ccccccggaa ctgccggtcc acgcaaggag caaggcgatg aagattagac
     1141 aaggcttgac gggcggcgcc gtcctctcac tgctggtgct caaggcgcaa tcagcctttg
     1201 ccgcggcaac ctaccccgcg gctttcgaca ccgcgttcgg tatgccggct cccccccgcg
     1261 atgcgccctt cagcctgcct gcctcgcttc atgcctccac agtcttcgtg atcatcggcc
     1321 tgaccgttct ggccttcgcg gtgcgcgacg cgcgccgggc cggcacgctg ctgccggttt
     1381 tcgtggcgct gagcggcgtg ttctgcgcca ttcccgaggt cttcatcgat gtcgccggtg
     1441 gctgcttctg gccctacagc gacgggcagg ttgtctactc gattctcggc cggccaatga
     1501 catggtatcc catctgtgcc tggttcggct tcggggcggt gctggcctat gtgccctatg
     1561 ccctcttcct gaggcaggcg aaagtctcct ggctctgggc cgggctggtc gcagcctgcc
     1621 tgttcgacat cctggtcgag gaagtcatgc tgaacatccc cggcctctat gtctattacg
     1681 ggcaccagcc gctgatcctg gtcaccagat tcccggcctg gtggatgttc acaaatatcc
     1741 ctggcgtgtt cctggcctcg gcgctggcct ggcgcttccg cgatgagctg aagggtctgc
     1801 ggggcgcttt catgttcatg atcaccccgg cggccttcct cgcggtgttc ggctttgcgg
     1861 ccatgccggc gagcatcgtc attctgggta attccgcctg gctaccgacc cagctcggcg
     1921 gcgttctgac cgccgccctc ggcctcaccg caagcgccct caccatccgg ctcgtgctca
     1981 ggcggaatcc gttcaggctg tcggatgtcg tcgggtaggg gagaacgggg ggcggccagg
     2041 gatatgtgat tttttaatca aaatgcctcg ggtagagtcg gggcggttca gtttttgaca
     2101 gagacgctga gttcatcatg gcaagccccc gaagcgtaat ccagttctag agtagttaat
     2161 tg
//
LOCUS       DASQCV010000255         2180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_887243, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000255 DASQCV010000000
VERSION     DASQCV010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_887243"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1020)
                     /locus_tag="VEQ16_03880"
     CDS             complement(<1..1020)
                     /locus_tag="VEQ16_03880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62997.1"
                     /translation="MRYRPCLEVLEERLPLGDAVLGPLAALALVSTRAVAPAAAPASS
                     TASQAGAPAAVGRAGDFSSRAVTRPASSVAWLAPFGEDETAPGLAWDALTPPGPGTVR
                     RRRAAFAASPAPASTPEASPELVSPAPADRAEPPAQAVPAPFAAGVMPADPRLRIAAF
                     LPHTAPAATAVTPARQAQVNGNFGQLPLSFEENIGQADAQVHFLAHGPGYGLYLTGTE
                     AVMVLSPPTAPTATPAGAVAPAGDPAALLRPDLNPPPQSETPPAVVRLQLAGANPAPA
                     VSGLDRQPGQVNYFLGNDPAQWHTHIATFGRVQYDQVYPGIGLVYYGNQQQLEYDFVV
                     APGADP"
     gene            1917..2132
                     /locus_tag="VEQ16_03885"
     CDS             1917..2132
                     /locus_tag="VEQ16_03885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62998.1"
                     /translation="MVFNINQGSFLENELKTSFELNLFPVPRRINEKDGVYHLVFTQA
                     DDMAIAKQEVAEAAVARRVMARDVLWR"
BASE COUNT          388 a          668 c          748 g          376 t
ORIGIN      
        1 cgggtcggcc cccggcgcca ccacgaagtc gtattcgagc tgttgctggt tgccgtagta
       61 gaccaggccg atgcccggat agacctggtc gtactgcacc cggccgaagg tggcgatgtg
      121 cgtgtgccat tgcgccgggt cattgcccag gaaataattg acctggccgg gctgccggtc
      181 caggccgctg accgcgggcg cggggttggc gccggccagt tggaggcgga cgacggcggg
      241 cggagtctcg gattgtgggg gtggattgag atcgggccgc aggagcgcgg ccgggtcgcc
      301 ggccggcgcg acggcgcccg ccggcgtggc ggtgggcgct gtcggcgggc tcaagaccat
      361 caccgcttct gtgcccgtca ggtataggcc gtaccctggc ccgtgcgcca ggaagtggac
      421 ctgggcgtcg gcctgtccga tgttctcctc gaaggacaac ggcagctggc cgaagttccc
      481 gttcacctgg gcctggcgcg ccggcgtgac ggcggtggcg gcgggcgcgg tgtgcggcag
      541 aaatgcagcg atccgcaacc tcgggtcggc gggcatcacg cccgccgcga atggggcggg
      601 cacggcctgg gccggaggct cagcgcggtc ggctggcgcg ggggacacca gctcgggcga
      661 cgcttccggc gtcgaagctg gcgcggggct cgcggcgaac gctgcgcgcc gccggcgtac
      721 ggtgccgggc ccgggcggcg tcagggcgtc ccacgccagt cccggcgcgg tctcgtcctc
      781 gccgaaggga gcgagccagg ccacggagct ggccggcctg gtgacggctc gactggagaa
      841 atcgcccgcc cgcccgacgg ctgctggggc cccggcctgg gacgcggttg atgatgccgg
      901 cgcggcggcg ggcgccacag cgcgggtgga caccagcgcc agggccgcca gcggtcccag
      961 cacggcgtcg cccagaggca accgctcctc caggacttcc agacagggtc gatagcgcat
     1021 caacggacgg gggcgcctcg gccggcgccc gtgccgcatc gtgtgtgtca tgagcttcta
     1081 ccttcgtcgg atcatcacct gtgccaaagc agaacccgtg ctgcgggcgc gccgatgcgc
     1141 tcgcacgaag attcctcgga ccgatccccg ccggtcgccg ggcgacgccg atccgcatta
     1201 gtcttgatcg atcgcaaaag cctcagcccc gatcccaaga accggcagcg acgtgtgttc
     1261 gacctgaccg gcctgaaccc gccgcgaaca cgcgagccgt atgcagacgg ggagcgccga
     1321 gccggaacgg tgcattatcg cgcgcccatg ccgccagtca agcactttcc agcaagaaaa
     1381 ggggaatgca catgtacatc atgacccacc gggcgttggc gccgcggctc gttgctttca
     1441 gacattggaa agcaatgtgc agcccttgtg agggcccgca gcatcggtcg ccgctaaagc
     1501 tacgccaagc aagtgcgaca cgcggtggtc gatgtgaccc gtgtgcaagc agttcgttag
     1561 actgtcggcg gaggctactg caaacgtcgc atccgtccaa ccaggactgt ccagatcggc
     1621 cttgttttcg caactttggg cgttttcccg aagcattgca attggctttg ctggaaaatt
     1681 atcctgatta cgtggttggt cggaagatcg gccgaagtcc aaaagcggct cgaatcattt
     1741 ggaaccggtt aggaatcccg cacccttctg atggcagccg gaaaaaagga tttcatcaaa
     1801 cagttgtccg ttgattagcg cgtgagggat tttgagaggg attggattca tatcttcaac
     1861 ccattctttc gaagttcttg gacggtgact ggtcttccac gaaaagaccc atccatttgg
     1921 tattcaacat aaatcaaggt agtttccttg aaaacgaatt gaaaaccagc tttgaactga
     1981 atttattccc agtcccgcgg cgtatcaatg aaaaagatgg cgtttaccat ctcgtcttta
     2041 cgcaggccga cgacatggcc atcgcaaaac aagaagtggc agaggccgcc gtggcgcggc
     2101 gggtaatggc ccgggatgtt ctctggcgtt agccgccacg gccagcccgt cggggggggt
     2161 ggccaagtag cggggtaata
//
LOCUS       DASQCV010000256         3155 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2213848, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000256 DASQCV010000000
VERSION     DASQCV010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3155
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2213848"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..738)
                     /locus_tag="VEQ16_03890"
     CDS             complement(<1..738)
                     /locus_tag="VEQ16_03890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP62999.1"
                     /translation="MPSARPALPCPSLFCLVALLAALPSLAALAIFGVFEPPDAPGYE
                     AYAMLILHHAIPSGDALLHGGQGWITLFRMGGFPRLLAWLQALFPVHWRLALAAGQIA
                     AQSAVAAGSFTVARRLGARTHLALAAALLPACGYVVVLNLCVLTDALNAAFLSGAALV
                     LVLRPDWAGALLAGLLLAAAEGLREATIFIALAYIPLALCARPRLLCVALVVLPAWAV
                     AGAHVSWNMARGAGPVLTTSGQLVMVQP"
     gene            complement(772..1653)
                     /locus_tag="VEQ16_03895"
     CDS             complement(772..1653)
                     /locus_tag="VEQ16_03895"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0070007 - glutamic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family glutamic-type intramembrane
                     protease"
                     /protein_id="HYP63000.1"
                     /translation="MISFFIAVLPALFMWEFAAIKVNFRLPKTARKRLFRLGGRFALL
                     ALVIELCEGLVPLKGLSPVAHALVQALFIAAVPEELVKFAAVNKFGRKELDELGPGVA
                     ILLAVGASLGFAVLETKLYVLGGGLGSWVVRALSATPMHAIFGFVMGSFMVLAWRDPL
                     RFDERMLTLALVVPIIFHATYDFLLMLHDFNPALHWPLALEPLVMLVEGLFALILTNH
                     AVNGATAIYGRTVPADPRGHRALGLACVTLLLLFACLWAGEALHGVRAFAMLAAMPTV
                     LTLDLGLLAYVRSRSWI"
     gene            1937..2380
                     /locus_tag="VEQ16_03900"
     CDS             1937..2380
                     /locus_tag="VEQ16_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006557101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HYP63001.1"
                     /translation="MTYDFAPLFRTAIGFDRLARLVDTVPQDATGYPPYNIEKTGADS
                     YRVTLAVAGFGPEDIELTVKDNALLVSGKVAAEEQKHEFLHRGIAARAFTRRFVLADH
                     VVVDRAELVNGLLYVALRREVPESAKPRRIAINAAQKPAELPHAA"
     gene            complement(2424..>3155)
                     /locus_tag="VEQ16_03905"
     CDS             complement(2424..>3155)
                     /locus_tag="VEQ16_03905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HYP63002.1"
                     /translation="EALFLLPWIWLPAVGLMLRGFWRGPAERTGWLLSWASVVPVVLF
                     AVVGLWSSTRILYHWAAPGYLMLFPVLGDWAAKLRPMLRNTVAQVSAVLLAGAVLFMA
                     AELSLDFIPHLNRVFAPGKSPLLQAVDWDSLAAQIPPHVDAVAAQRWFDAGKVGYALR
                     DVPVAITVFGADPHEFGFSVPPASLVGKTVLLLAMPGNVTDSYNRYAPYFRTLKPGPA
                     LTVMHHGAVLLVIPTFIGTDLLRAP"
BASE COUNT          666 a         1031 c         1016 g          442 t
ORIGIN      
        1 cggctgcacc atcaccagct ggccagaggt ggtgagcact ggcccggcac cgcgcgccat
       61 gttccaggag acgtgcgcgc ccgccacggc ccaggccggc agcaccacca gcgccacgca
      121 gagcaggcgc ggccgcgcgc acagggccag ggggatatag gccagcgcga tgaagatggt
      181 ggcctcgcgt aacccttccg ccgccgccag cagcaggcct gcgagcagcg cgcctgccca
      241 gtccggccgc agcaccagca ccagcgcggc gccggagagg aaggcagcat tgagcgcgtc
      301 cgtcaacacg cagagattca gcaccaccac atagccgcag gcgggcagca gggcggcggc
      361 cagggccagg tgcgtgcgcg cgcccaggcg ccgcgccacg gtaaagctgc ctgccgccac
      421 ggcggattgc gcggcgatct gccccgccgc cagcgccagg cgccaatgca cgggaaacaa
      481 ggcctgcagc caggccagca gccttggaaa cccgcccatg cggaacaaag tgatccagcc
      541 ttgcccccca tgcagcagcg catctccgct tgggatggca tgatgcagga tcagcattgc
      601 ataggcctca tagccgggcg cgtccggcgg ctcgaacacg ccaaatatgg ccagggccgc
      661 cagcgagggc agggcggcga gcagcgcgac cagacagaac agggaggggc aaggcagggc
      721 aggacgggcg gatggcatga gagggcttat gatcgccggc tggccaggcg gctagatcca
      781 gcttctcgac cgcacgtaag ccagcagccc gagatcgagc gtcagcactg tcggcatggc
      841 ggcaagcatg gcgaaggccc tgacgccatg cagcgcctcg cccgcccaca ggcaggcgaa
      901 cagcagcagc agcgtgacac aggccagccc cagcgccctg tgtccgcgcg gatcggccgg
      961 tacggtgcgg ccatagatcg ccgtggcgcc attcaccgca tgattggtga gaatcagcgc
     1021 gaacagcccc tccaccagca ttaccagcgg ctccagcgcc agcggccagt gcaaggcggg
     1081 attgaaatcg tgcagcatca gcagaaaatc ataggtggcg tggaagatga tgggcaccac
     1141 cagcgccagg gtcagcatgc gctcatcgaa gcgcagcggg tcgcgccagg cgagcaccat
     1201 gaaggagccc atgacgaagc cgaagatcgc atgcatcggg gtggcggaca aagcccggac
     1261 cacccacgag cccagcccgc cccccagcac ataaagcttg gtttccagca ccgcgaagcc
     1321 gagcgaagcg ccgaccgcca gcaggatcgc cacacccggc cccagctcgt ccagctcctt
     1381 gcggccgaac ttattgaccg cggcgaactt gacgagctcc tccggaacgg cggcgatgaa
     1441 cagcgcctgc accagcgcgt gcgccaccgg cgagagacct ttcagtggca ccagcccctc
     1501 gcacagctcg atgaccaggg cgagcagagc gaagcgcccg cccagccgga aaagccgctt
     1561 gcgcgccgtt ttcggcagcc ggaaattgac cttgatggcg gcgaattccc acataaacaa
     1621 agccggcagg acggcgatga agaagctgat catgctgggt ttctcatggc gcgcgggaag
     1681 ctgcgccgga tgttacagac ggaaaattca ttccgccatg atctcataat ggttgcgtga
     1741 tcatttttcc ttgaagaggg tcgcgccggt ttttgcttga cggaaaatcc ttgaagctgg
     1801 cgaaaaaatt cctataatca aacccgcagg gccgcctcga tgaggggtcc ggcgcccagg
     1861 aagcccgcca gtccgggggt ttcgcgggca tttatctgaa ctgtgcacat accttgcttt
     1921 tgaaggaggt ttactcatga cttacgattt cgcgccgctc ttccgtaccg ccatcggttt
     1981 cgaccgcctg gcccgtctgg tcgatacggt gccgcaggat gccaccggct atcctcccta
     2041 caatatcgaa aagaccggcg cggattccta ccgcgtcacg cttgccgtgg ccgggtttgg
     2101 ccctgaggac attgagctga ccgtgaagga caatgccctt cttgtgtccg gcaaggtggc
     2161 ggctgaggag cagaaacacg agtttctgca tcgcggcatt gccgcccgcg ccttcacccg
     2221 ccgcttcgtc ctcgccgacc atgtggtggt ggatcgggcc gagctggtga acgggctcct
     2281 gtacgtcgcg cttcgccgcg aggtgccgga gagcgcgaag ccgcgccgca tcgccatcaa
     2341 tgcggcgcag aagccggctg agctgccgca cgctgcataa agctggctgt tacgattggg
     2401 aaagggggct tcggccccct tttttatggc gcgcgcagca gatccgttcc gatgaaggtc
     2461 gggatcacca gcagcacggc gccgtgatgc atcacggtga gtgcgggccc gggtttgagc
     2521 gtgcggaaat agggggcgta gcggttatag ctatccgtca cattccctgg catggcgagt
     2581 agcaggacag tcttgcccac gagcgatgcg ggtggaacgg aaaagccgaa ttcatgcggg
     2641 tcggccccaa ataccgttat ggcaacaggc acatcgcgca gggcatagcc aaccttcccg
     2701 gcatcgaacc agcgctgcgc cgccacggca tccacatggg gtggaatttg cgcggccagc
     2761 gaatcccaat ccaccgcctg cagcaaaggc gatttgcccg gcgcgaaaac gcggttgagg
     2821 tgcggaatga aatccagcga aagctccgca gccatgaaca gcaccgcgcc cgcgagcagt
     2881 acggcgctga cctgcgccac ggtgttgcgc aacatggggc gtaatttcgc ggcccagtcg
     2941 cccagaacgg gaaacaacat cagataacct ggcgcggccc aatgatagag aatacgcgtg
     3001 gaggaccata agcccaccac ggcgaacagc accaccggca caacagaagc ccaagagagc
     3061 agccagcccg tgcgctcggc cgggccgcgc cagaaaccgc gcagcatcag cccgacggcg
     3121 ggaagccaga tccagggcag aagaaacagc gcctc
//
LOCUS       DASQCV010000257         1700 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2876832, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000257 DASQCV010000000
VERSION     DASQCV010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2876832"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1151)
                     /gene="metC"
                     /locus_tag="VEQ16_03910"
     CDS             complement(<1..1151)
                     /gene="metC"
                     /locus_tag="VEQ16_03910"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004121 - cystathionine beta-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HYP63003.1"
                     /translation="MTKRTETRLVQAGRDPTRSYGLVNPPVARGSTVLHTSVAAKAEI
                     GRHVLEPVEIYGLCGTSTHFALEATIAEIEGGTHCQVTSSGLSAITVPLLAYLCSGDH
                     LLVPDSVYGPTRVFCDRLLRRYGIETTYYDPMTMAEALAPLFRANTRVLFTESPGSHT
                     FEVQDIPALAELAHARGAKLFLDNTWGIHHFQPFTKGVDVSIQALTKYPGGHSDIVLG
                     AVTVNTEEDWRWLRLGSLELGNYASPDDCWLALRGMRTLLVRLKAQSEAALRIAHWLQ
                     TRKEVARILHPAFPGCPGHEYFIRDFTGSCGLFGVVYHPEFTAADVVRMIDGLKLFGI
                     GASWGGYESLVLPTTGTIRRSEGTGVFEGEMARFHIGLENVDDLIEDLE"
     gene            complement(1220..1558)
                     /locus_tag="VEQ16_03915"
     CDS             complement(1220..1558)
                     /locus_tag="VEQ16_03915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63004.1"
                     /translation="MNNAVILLLLTLAATLEAGGDALARTALHSQAIPLIRLGLFAAA
                     ALVLFIYGVTVNLPPWDFGRLLGVYVCLFFLVAQIINLLAFGIRPGPPIFAGGALILA
                     GGMVMTFWRT"
BASE COUNT          364 a          502 c          557 g          277 t
ORIGIN      
        1 tgttcgagat cttcgatcaa atcatccacg ttttcgaggc ctatatggaa gcgcgccatt
       61 tcgccctcga acacgccggt accttctgac cggcggatgg tgccggtggt gggcagcacc
      121 aggctttcgt aaccgcccca actcgcacct atcccaaaga gttttaatcc gtcaatcatg
      181 cgcacgacat ctgcggcggt aaattctggg tgatagacca ccccgaacag gccgcaggag
      241 cctgtgaagt cgcggatgaa atattcatga ccggggcagc cgggaaaagc cgggtggagg
      301 atgcgcgcaa cctccttgcg ggtctgcaac cagtgcgcga tgcgcaaggc cgcctcgctt
      361 tgcgccttca gccgcaccag cagcgtgcgc atgccacgca gagcgagcca gcaatcatcc
      421 gggctggcat aattgccgag ttccaaagac ccaaggcgca gccagcgcca atcctcttcc
      481 gtgttgaccg ttaccgcacc gagcacgatg tccgaatggc cgcctggata tttcgtcagc
      541 gcctggatgg agacgtccac gcccttggtg aaaggctgaa aatgatggat gccccaggta
      601 ttatcgagga aaagtttcgc gccacgcgcg tgcgccagct ccgcaagggc ggggatgtcc
      661 tgcacctcga aggtgtggct gccggggctt tcagtgaaca gcacccgcgt attggcgcgg
      721 aacaaaggcg ccagggcttc cgccattgtc atcggatcgt aatatgttgt ttcaataccg
      781 tagcggcgaa gcaggcggtc gcagaaaacg cgggtggggc catagactga gtcaggcacc
      841 agcaaatggt cgccgctgca caaataagcg agtagcggca cggtgatggc ggaaagaccg
      901 gagctggtga cctggcagtg cgtcccgccc tcgatctcgg caatggtggc ctccagcgcg
      961 aaatgggtcg aggtgccgca caggccgtaa atctccaccg gctccagcac atgccggcca
     1021 atctccgcct tggcggccac tgacgtatgc aacaccgtgg agccgcgcgc gaccggcgga
     1081 ttgaccagcc cataggaacg ggtgggatcg cgccccgcct ggacaagacg tgtttctgtg
     1141 cgtttggtca tgaccaacct ttagggggtt gtgagaaagc ggcaaggggc ttagccccct
     1201 gcccgcaaag ccccctgccc taggtccgcc agaacgtcat gaccatgccg ccggccagga
     1261 tgagggcgcc gccggcaaag atgggcgggc cggggcggat gccgaaggca aggagattga
     1321 tgatctgcgc gacgaggaag aagaggcaga catagacccc gagcagtcgt ccgaagtccc
     1381 agggcggcag gttgacggtg acgccataga tgaagaggac gagggcggcg gcagcgaaga
     1441 ggcccaggcg gatgagggga atggcttggc tgtgcaaggc ggtgcgggcg agggcatcgc
     1501 cgcccgcttc cagcgtggcg gcaagggtga gcagcagcag gatcacggcg ttgttcaaaa
     1561 gcgggcctcc ggcgcaacaa agccggggcg gaaggccccg gctttgccat gcacacacgg
     1621 taacatatcc cggctggacc gcctggcaag cgcagctccg gaacagcgtt tacttagcaa
     1681 gccttatgcc aaggaaatcg
//
LOCUS       DASQCV010000258         2908 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2545063, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000258 DASQCV010000000
VERSION     DASQCV010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2908
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2545063"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..866
                     /gene="gloB"
                     /locus_tag="VEQ16_03920"
     CDS             141..866
                     /gene="gloB"
                     /locus_tag="VEQ16_03920"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HYP63005.1"
                     /translation="MTVTVQAIPMLSDNYSWLLTEGVTGKIGIVDPAEADPAIAALEA
                     AGLKLDMIFLTHHHPDHVGGAEELRARYGAKIAGNRADAHRLPRLDIAVHEGSLVEFG
                     VANARVIEVPGHTLGHIAYYFADGGLLFAGDTLFSMGCGRLFEGTAGQMFNSLGKFAD
                     LPDDTLLCCGHEYTQSNARFALSVEPDNAALLARNEEVSRLRAEGLATVPVSMGVERA
                     TNPFLRAESVEELGARRTAKDNF"
     gene            complement(908..1522)
                     /locus_tag="VEQ16_03925"
     CDS             complement(908..1522)
                     /locus_tag="VEQ16_03925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031966 - mitochondrial membrane
                     [Evidence IEA];
                     GO_process: GO:0033617 - mitochondrial cytochrome c
                     oxidase assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HYP63006.1"
                     /translation="MPARPPPGKTLSMLRRSLFLSLLALAACHHNLSPQDVSVRGLVP
                     NLAFTMTDAATGKTVTEADFKGSVTLLYFGYTNCPDVCPATLYNLDRVQKRMGDDAAK
                     LKVIFVTVDPDRDTPEVLAQYAALFGNNITGLRGTADQLYELARRYRVVFSVTKTPEY
                     TVTHSSAVYVFNAEGKPEFIIAGLDNTKPDLDGIARDLKYVAGE"
     gene            complement(1525..2766)
                     /gene="rmuC"
                     /locus_tag="VEQ16_03930"
     CDS             complement(1525..2766)
                     /gene="rmuC"
                     /locus_tag="VEQ16_03930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003628227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HYP63007.1"
                     /translation="MDHDVLLVLPTTLLAALAAGFAFAAWRAASSGPARLKLVLDQLL
                     AGNRAEAEFLRSSLAATEGRLTAAIQSGTTEALSKAFAQISAATQSMTATLDGLRRQA
                     GEDAQKTTALLETRLGAIQASVNEKLHEAVEQQMTASFARVLEQFAQVQQAMGEVQSA
                     AAQIGDLKRIFSNVKTRGGWGEAQLGAMLEQILPPGAYERNFALKEGSREQVDFALRM
                     PSRELLWLPVDSKFPTEDYERLLLAAESAEAEAERAARDGLAARVRLEAKRIREKYIC
                     PPETVDFAVLYLPSDGLFAEVARIPGLIDDVRAREKVIVLGPTLLPAMLQTIHLGHVT
                     LHLEQRAGEVRNILGATRTEMIKMDNMLEKLAKNASAMTNNIADARRRTRAMDKVLRN
                     VEMVEGQGPALLGLESEEEEL"
BASE COUNT          525 a          931 c          897 g          555 t
ORIGIN      
        1 tcgggccaca gggcccggag tctttcgcgc agcaatcccg ccgtcaggcg ccccaaaggc
       61 gtggcgtaga aagctgctgc atctcgtgca tcaatggcca ttgcccttat atagcgcggc
      121 aaagacgagg agtgacagtg atgacggtga cggtgcaggc aattcccatg ctctcggaca
      181 attactcctg gctgctcaca gagggggtga cggggaagat cggcattgtc gacccggccg
      241 aggctgatcc cgccatcgcc gcgctggagg cggcggggct caagctggac atgattttcc
      301 tcacccacca ccatcccgac catgtgggcg gagcggaaga gctgcgcgcg cgctatgggg
      361 cgaagattgc cggcaaccga gccgatgcgc accggctgcc gcggctggac attgcggtgc
      421 atgagggctc gctggtggaa ttcggtgtgg ccaatgcgcg ggtcatcgag gtgccgggac
      481 atactctggg gcatatcgcc tattattttg ccgatggcgg gctgcttttc gcgggcgata
      541 cgctgttttc catgggctgc ggccggctgt tcgagggcac ggcggggcag atgttcaact
      601 cgctgggcaa attcgcagat ctgccagacg atacgctgct gtgctgcggc catgaatata
      661 cgcagtccaa tgcgcgcttc gccctgagcg tggagcccga taacgcggcg ctactggcgc
      721 ggaacgagga ggtgagccgc ctgcgcgcgg aggggctggc gaccgtgccg gtgagcatgg
      781 gggtggagcg ggcgaccaat ccgtttttgc gggcggagag tgtggaggaa ctgggggcgc
      841 ggcggacggc taaggataat ttttgagggt tccacagccc cagcgggatc caggggctaa
      901 gcccccttta ctcccccgca acgtacttaa gatcacgcgc aatcccatcc agatccggct
      961 ttgtattatc cagcccggcg atgatgaatt ccggcttgcc ctcggcattg aacacataca
     1021 cggccgagga atgggtgacg gtatattccg gcgtcttcgt taccgagaac accacgcggt
     1081 agcgccgcgc cagctcgtag agctggtccg ccgtgccgcg cagcccggtg atgttgttgc
     1141 cgaacagcgc ggcatattgc gccagcacct cgggcgtatc ccggtccggg tcgacggtga
     1201 cgaaaatcac cttcagcttc gccgcgtcgt cccccatgcg cttctggacg cggtcgagat
     1261 tgtacaaggt cgccgggcag acatcggggc agttcgtgta gccgaaataa agcagcgtga
     1321 cgctgccctt gaaatccgct tccgtcacgg tcttgcccgt ggcggcatcc gtcatggtga
     1381 aggcgaggtt cggcaccagt ccgcgcacgc tgacatcctg cggcgagaga ttatggtgac
     1441 aggccgccag ggccaggagc gatagaaaca aggaccgcct gagcatggaa agggttttgc
     1501 ccggcggggg acgggctggc aagcttacag ttcctcttcc tcgctctcca gccccagcag
     1561 cgctggcccc tgaccttcta ccatctccac attgcgcaac accttatcca tggcgcgagt
     1621 gcgcctgcgg gcatccgcga tattattagt catcgcgctg gcatttttgg ccaatttctc
     1681 aagcatattg tccattttaa tcatctcagt gcgagtggct ccaaggatgt tacgtacctc
     1741 tccagcgcgc tgttccaaat gcagtgtaac gtgcccaagg tggatggtct gaagcattgc
     1801 gggaagcaaa gttggcccca gaactatcac tttttcccgc gccctcacat catcgatgag
     1861 cccgggaatc cgggctactt ctgcaaacaa tccatcgctc ggcaaataga gcactgcgaa
     1921 gtcaaccgtc tctggcgggc agatatattt ctcccgtatc cgtttggcct ccaaccgcac
     1981 ccgcgcagcg agcccgtcgc gcgcagcccg ttccgcctct gcctcggcgc tttccgctgc
     2041 caacagcagc cgctcataat cctcagtagg gaatttgctg tccaccggca gccagagaag
     2101 ctctcgcgag ggcattcgta gggcaaagtc cacttgctcc cgcgaacctt ctttcagcgc
     2161 gaaattccgc tcataggcgc ctggcggcaa aatctgctcc agcatcgccc ccagttgcgc
     2221 ctcgccccag ccgccgcgcg tctttacatt ggagaagatg cgcttgaggt cgccgatctg
     2281 tgccgcggcg gactgcacct cgcccatggc ctgctgaacc tgggcgaact gctccagcac
     2341 gcgggcgaag ctggccgtca tctgctgctc caccgcctca tgcagcttct cgttgacgct
     2401 ggcctggatg gcgccgaggc gcgtctccag caacgccgtg gtcttctgcg catcctcgcc
     2461 cgcctggcgg cgcagcccgt ccagggtggc cgtcatgctc tgggtggccg cgctgatctg
     2521 cgcgaacgct ttcgacaacg cctccgtggt accgctctgg attgccgccg tcagccgccc
     2581 ctcggtggcg gccaggctgc tgcgcagaaa ctccgcctcg gcccggttgc cggccagcag
     2641 ctggtccagc accagcttca gccgcgctgg gccggacgac gccgcgcgcc aggcggcaaa
     2701 ggcaaacccg gccgccaggg cggcgagcaa ggtggtgggg agaacaagca aaacatcatg
     2761 gtccatgccc ccttctacct ccagctgccg agtcgcgggc aaagccgccc cccgcgagtc
     2821 gcgggcaaaa ccattccgtg ctaatcttgg gcaacaaacg gagcgccaca tgtataacag
     2881 tgccgtcacc atcatttcgc tcttcttc
//
LOCUS       DASQCV010000259         2127 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_58092, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000259 DASQCV010000000
VERSION     DASQCV010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58092"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1122)
                     /locus_tag="VEQ16_03935"
     CDS             complement(<1..1122)
                     /locus_tag="VEQ16_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HYP63008.1"
                     /translation="MDVTDPAALDAEELLAAYAAKKLNPLEALQAVTERIARRNPEIN
                     AFAVMNPQALQAARESAKRWAWGEAKGALDGVPVTVKDLIDVAGLPTRRGSKATDPMP
                     VEEDAPLVKKLRAAGAVIIGKTTTTEFGWKSPGDCPLHGITRNPWNVAHTPGGSSAGA
                     GAAAAAFFGPLHVGTDAGGSVRIPAAWSGVVGVKPTFGRVPQWPLGAFGHVAVAGPMT
                     RSVRDAALMLSVLAGHDAADPFSLPDGPRDFLAGIEDGVAGLRIGILLRPGFDAPVDA
                     DGMAALETARRSLEQQGAKLEELAVDLPDISAVFSQIWGVALARAMETVEVPKRGLMD
                     AGLRRVAERFSGTLGIDVMRAEAMRVEAAHIMAALEVDAI"
     gene            complement(1113..2096)
                     /locus_tag="VEQ16_03940"
     CDS             complement(1113..2096)
                     /locus_tag="VEQ16_03940"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HYP63009.1"
                     /translation="MQTVADGLLGAIGNTQLIRLKRASAATGCEILGKAEFCSPGGSV
                     KDRAALAIIRDAEARGVLRPGGIIVEGTAGNTGIGLTLVANALGYKCVIVMPETQSQE
                     KIDFLRMIGADLRLVPAKPYRDPGNYVHVSRRLAEELGAVWANQFDNLANREGHRATT
                     GPEIWAQTEGRVDAFTCSCGTGGTLAGVSLALKERKEGVKIVLADPEGSGLYGWVKSN
                     DLTVEGSSITEGIGQSRVPANLEGVPIDDAVRIPDPEALEQIFDLLIHEGISVGGSSG
                     INVAAAIRVAREMGPGHTIVTMLCDGGSRYQSKLFNPEFLRSKNLPVPSWM"
BASE COUNT          383 a          841 c          558 g          345 t
ORIGIN      
        1 aatcgcatcc acctccagcg ccgccatgat atgcgccgcc tccacgcgca tcgcctcggc
       61 gcgcattacg tctatgccca gcgtgccgga aaaacgttcc gccacacgcc gcaaccccgc
      121 atccatcagc ccgcgtttcg gcacctccac cgtttccatc gcacgcgcca gcgccacgcc
      181 ccagatttgc gagaacacag ccgaaatatc cggcaaatcc accgccagtt cttccaattt
      241 cgccccttgc tgctccaggc tgcgccgcgc cgtctccaaa gccgccatcc catccgcatc
      301 caccggcgca tcaaagcccg ggcggagcaa aataccgatg cgcaaccccg ccaccccgtc
      361 ttctatcccg gccagaaaat cgcgcggccc atccggcaga gaaaacgggt ccgccgcatc
      421 atgcccggcc aacaccgaaa gcatcaaagc cgcatcgcgc accgagcgcg tcatcggccc
      481 cgccaccgcc acatggccga acgcccccag cggccattgc gggactcgcc cgaaggtcgg
      541 cttcaccccc accacgccag accaggccgc cggaatgcga acggacccgc ccgcatccgt
      601 gcccacatgc agcggcccga aaaacgccgc cgccgcagcc cccgcccccg cggaggagcc
      661 gcccggcgta tgcgccacat tccacggatt gcgtgtaatc ccgtgcagcg ggcagtcgcc
      721 aggcgatttc cagccaaatt cggtcgtggt ggtcttaccg ataatcaccg cccccgccgc
      781 acgcagcttc ttaaccagtg gcgcatcctc ttccaccggc atcgggtcgg tcgccttgct
      841 gccccgcctg gtcggcaggc cggccacgtc gatgaggtcc ttcaccgtca ccggcacgcc
      901 atcgagcgcg cccttcgcct caccccaggc ccagcgcttg gcactctccc gcgctgcctg
      961 caaagcctgc gggttcatca cggcgaaagc gttgatctcg ggattgcgcc gggcgatgcg
     1021 ctcggtaacg gcctgcagcg cctccagcgg gttgagcttc ttcgccgcgt aagcggccag
     1081 caattcctcc gcgtcgagcg ccgccggatc ggtcacatcc atgacggcac cggcagattt
     1141 ttgctccgca gaaattccgg attgaataat ttgctctgat agcgcgaacc gccatcgcag
     1201 agcatggtga caatagtatg gcccggcccc atctcccgcg ccacacggat ggccgccgcc
     1261 acattaatcc cggacgaccc gccgaccgaa atcccctcat ggatcagcag gtcaaaaatc
     1321 tgctccagcg cctccgggtc ggggatgcgc accgcatcgt caatcggcac cccctccaga
     1381 ttggccggca cgcgggactg gccgatcccc tcggtgatgg aggagccttc caccgtcagg
     1441 tcattgctct tcacccagcc ataaagcccg cttccctcgg ggtccgccag cacaattttc
     1501 acaccttcct tgcgctcctt caacgccaaa gacacgccgg cgagcgtgcc ccctgtgccg
     1561 catgagcagg tgaaggcatc cacccgcccc tccgtctgcg cccatatctc cgggccagtg
     1621 gtggcgcggt ggccctcgcg attggccaga ttatcgaact ggttggccca taccgccccc
     1681 agctcctcgg ccagccggcg gctcacatgc acataattgc ccgggtcccg gtacggtttc
     1741 gccggcacca gccgcaaatc cgcgccgatc atacgcagaa aatcaatctt ttcctggctc
     1801 tgtgtctccg gcatcacgat gacgcattta tagcccagcg cattggccac cagcgtcagc
     1861 ccgatgcccg tattccccgc cgtcccctcg acgatgatgc cccccggccg caataccccg
     1921 cgcgcctcgg catcgcggat gatggccagg gccgcccggt ccttcaccga gccgccgggc
     1981 gagcagaact ccgccttgcc cagaatctcg catcccgtgg cggcggaggc gcgtttcagc
     2041 ctgataagct gggtgttgcc gatcgccccc aacaacccgt ccgccactgt ttgcataccc
     2101 cgcgctcccc gctatgctgc gaaaaag
//
LOCUS       DASQCV010000260         4370 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1550733, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000260 DASQCV010000000
VERSION     DASQCV010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4370
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1550733"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(256..1548)
                     /locus_tag="VEQ16_03945"
     CDS             complement(256..1548)
                     /locus_tag="VEQ16_03945"
                     /inference="COORDINATES: protein motif:HMM:TIGR03025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exopolysaccharide biosynthesis polyprenyl
                     glycosylphosphotransferase"
                     /protein_id="HYP63010.1"
                     /translation="MSGIAAIYAGIGAGAPVAFLFMLLVLILFFNRNLYKIEVVQDFG
                     KAWPQLVAAWVVAGVIAVGVKLMTQGDEAQIDYHSCLVAYAAGLGVVMGERLGMTLLF
                     RFLVRRGVISHIVAVIGAPDLARRFSRELVNNRFGVRVVMIFDDQAAGSNAVDMLVAY
                     EKSNRIDTIVITHPMDNSERLHALVQRLGSLPTNIRILPCDLAMKMKTRRYAPHGEIP
                     GVQLVALSDRPIDEWGGVAKFLLDRGVALLALLFFGPLMLLCVAGIKLSSPGPVLFRQ
                     KRIGYKNEIFMVYKFRSMHMHACNTGKLTERNDARIFKFGHVMRKLSLDELPQIFNVL
                     KGDMSLVGPRPHMPEARAAGHFYFDVVSAYALRHRVKPGITGWAQVCGWRGPTETVEQ
                     IEKRVAHDLFYIDNWSFGFDLLILIKTLFVGFAGKNAF"
     gene            2444..3787
                     /locus_tag="VEQ16_03950"
     CDS             2444..3787
                     /locus_tag="VEQ16_03950"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar MFS transporter"
                     /protein_id="HYP63011.1"
                     /translation="MGLGTMHQARGAAESVAGGRRMAALVVSLFFTWGFVTVLNDPLI
                     AKLKSLFALNYAEAMLTQFAFFLGYFIFSAPAGAILGRFGYVRSIALGLAIMAWGCLL
                     FAPAARLAFYPLFLLALFSVASGITILQVAANPYIAALGAASSAHSRLTLAQAFNSLG
                     TFVGPFIGALFILQTGTATPAALPPAQLQALRVHEAQIVQRPFLVLAGLLLAYAMLFW
                     RLRHRPAPSSASAHATPFHGALLGRPRLLFGAACIFAYVGAEVSIGSGLTNFLLQPSV
                     FGTRAASLGASAAAWLHLATPFNAAQMAGAMVSLYWGLAMLGRFGGSYVLSKAAPGRV
                     LSVHALAAMVLALGASLAAGPAAAAAVLAIGLANSIMFPTIFTLALEQLGDETANGSA
                     LLCMAIVGGAIIPVIYGATADAIGLGHALIVPAACYLLIALYGWLAARGLGLRSA"
     gene            complement(3809..>4370)
                     /locus_tag="VEQ16_03955"
     CDS             complement(3809..>4370)
                     /locus_tag="VEQ16_03955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011390757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYP63012.1"
                     /translation="DEVQPGFGRTGMMWGFARHGLVPDIVTMGKPMGNGFPMGGVVTR
                     PEFLARFCQETGYFNTFGGNPVAAAAGEAVLDVIEEEGLIENAAATGALLQEGLLGLQ
                     KEFARIGGVRGAGLFLGLDFCDPDSGAPDQPMASHVINVLRQKFILIGAAGLYGHTLK
                     IRPPLCFRPLHAGWFLERLREVLRAA"
BASE COUNT          868 a         1463 c         1158 g          881 t
ORIGIN      
        1 cactctcgcg tcggcgcggc tgcaacctgt cccatgcggc gccattgcgc gatggatttt
       61 tccagcccgg catggcgttc ggccagtgtt gccaggatca gcttgtcgat catagcaatc
      121 cgcaaatcct tctccgccgc ctgcttggga agatccatga tacgggctcc acttcgttat
      181 gatgaacgga caaaaagtga tcggccaaat cgtcgtcgaa acacgggctg ccgttctcat
      241 acgggcagtt cgccgtcaga aggcgttctt gccggcaaag ccgacaaata gcgtcttgat
      301 caggatcagc aggtcgaaac cgaacgacca gttatcgata tagaacaaat catgcgcgac
      361 acgcttctcg atctgctcga cggtttccgt cgggccgcgc cagccgcaga cctgggccca
      421 accggtaatg ccgggcttca cgcgatggcg cagcgcatag gctgacacaa catcgaaata
      481 aaaatgcccg gccgcgcgcg cctccggcat atgcgggcgc ggcccgacca gagacatgtc
      541 gcccttcaac acgttgaaaa tctgcggcag ctcatccagg ctgagcttgc gcatgacatg
      601 gccgaacttg aagatccggg catcattgcg ctccgtcagc ttgccggtat tgcaagcatg
      661 catgtgcatc gagcggaatt tataaaccat gaaaatctcg ttcttgtagc caatgcgctt
      721 ctgccgaaac agaacgggcc cagggctgct cagcttgatg ccggcgacac aaagcagcat
      781 cagcgggcca aagaacagca gggctaaaag cgccacaccg cggtcgagca ggaatttcgc
      841 gacccctccc cattcatcaa tcggccggtc ggacagcgcc accagctgca cgccagggat
      901 ttcgccatga ggcgcatagc gcctcgtttt cattttcatg gcgagatcgc atggcaggat
      961 ccggatattc gtcggcagcg agcccaaccg ttgcacaagc gcatgcaacc tctcgctgtt
     1021 gtccatcggg tgcgtgatca cgatggtgtc gatccggttg gatttttcat aggccacaag
     1081 catgtctact gcattactgc cagccgcctg gtcgtcgaat atcatgacga cacgcacgcc
     1141 aaaccggtta ttgaccaact cccgggaaaa gcgccgggcg agatccggcg caccgatgac
     1201 cgccacgata tgagaaatga caccgcgacg caccagaaat ctgaacagca acgtcatccc
     1261 cagccgctca cccatcacca ccccgagccc agcggcatag gcaaccaggc aggaatgata
     1321 atcgatctgc gcctcatccc cctgcgtcat cagcttgaca ccgacggcaa tgacaccggc
     1381 aacgacccat gcggcaacga gttgcggcca agccttcccg aaatcctgta cgacctcaat
     1441 tttatatagg tttctgttaa agaaaagaat gaggaccagg agcatgaaca ggaatgcaac
     1501 cggcgcgccg gcgccaatgc cggcataaat cgccgcaatc ccggacatta caagaaaatc
     1561 acagaaaatg actgcataaa gaaaaaccgc aaagctgcaa gacgcccccg gcagctccgc
     1621 cgatgtttcc cctgcccaca aaaaatctga gtccatttcg ggaagagcca agcggtagca
     1681 gtcctcagac atagcaaatt ccttcgatgt ctaggagacg tatcttatcc tttgaagcgt
     1741 tctttgcgag atcgtgctgt ttttattgtg cagtcgcagc atagtcaatt aacatattat
     1801 taagaacctt aaaaactttt gtaattatca ccaagcattt gaaatgtcct ttttatcatg
     1861 aaatttattg atgaattttc cttccaatta ttataatgtt gcgaaggtac aatttattaa
     1921 acaaagcatt atcaattgaa taccgcaatt tgccgtcacg caaaaacgcc atctatttga
     1981 tttttattat atatgcttat cattctctac ctgagaacga tacggtgtag gcgtggcaat
     2041 ctggcgttgc aaacctcgcg aagccatcag cgctttgccg gttccttccg ttgccaaaca
     2101 gcaacataca aaatgcgtgc tacgctatac tcctctcgcg agagctgttt ccaccaccac
     2161 aacacaggat tgcacgcaca ttccagccgc gtggatcgtt ctgaaaggcc accctccacg
     2221 cagacctgca gcccgcccgc cgtcgcggtg cccccccaaa ccggcacaac acggccggat
     2281 ggccccacgg tgtctttgac aaggtgcgaa attctaaata cgcaccgccc aattgcgatt
     2341 tttggcgccc tccaagggcc ggagcggtcc atccgcacct ggtttccccg cggcgggtgg
     2401 tctggaaaaa ccgataaagg ggctggcatt gggggagagc ggcatgggct tgggtactat
     2461 gcatcaggcg cgcggcgcgg ctgagagcgt cgcaggcggc aggagaatgg cggctttggt
     2521 cgtctccctc ttcttcacct ggggctttgt caccgtcctc aacgacccgc tcatcgccaa
     2581 gctcaaaagc ctgttcgcgc tcaattatgc cgaggcgatg ctgacgcaat tcgccttctt
     2641 cctcggctat ttcatttttt ccgccccggc gggggccatt ctgggccggt tcggctatgt
     2701 acgctccatt gcgcttggct tggccatcat ggcctggggc tgcctgcttt ttgcgccggc
     2761 ggcacgcctc gccttctatc cgctcttcct gctggccctg ttcagcgtcg cctcgggcat
     2821 caccatcctg caggttgccg ccaaccctta tatcgccgcc ctgggcgcgg cctccagcgc
     2881 acatagccgg ctcactctgg cccaggcctt caattcactc ggcaccttcg tcggcccctt
     2941 catcggcgcg ctgttcatcc tgcagaccgg caccgccacg cccgccgccc tgccgccggc
     3001 ccagctccag gccctgcgcg tgcatgaggc gcagatcgtg cagcgcccct tcctggtgct
     3061 ggccggcctg ctgctggcct atgccatgct cttctggcgc ctgcgccacc gccccgcgcc
     3121 ttcttccgcc tcggcccatg ccaccccgtt ccatggcgct ctgctcggcc gcccgcgcct
     3181 cttgttcggg gcggcctgca ttttcgccta tgttggcgcg gaagtgtcca tcggctcggg
     3241 cctcaccaat ttcctcctgc agccctccgt gttcggcaca cgcgccgctt cactcggcgc
     3301 cagcgccgcc gcctggctgc atctcgccac ccccttcaac gccgcgcaga tggcgggcgc
     3361 catggtcagt ctctactggg gcctggccat gctgggccgc ttcggcgggt cctacgtgct
     3421 cagcaaggca gcacccggcc gggtgctctc ggtacatgcg ctggcggcca tggtgctggc
     3481 gctgggcgcc agcttggccg cggggcccgc cgccgccgcc gcggtgctcg ccatcggcct
     3541 cgccaattcc atcatgttcc ccaccatttt caccctggcc ctggagcagt tgggcgacga
     3601 aaccgccaat ggttccgccc tgctctgcat ggccattgtc ggcggcgcca tcatccccgt
     3661 catctacggc gccaccgcgg atgccatcgg gctcggccat gcgctcatcg tgccggccgc
     3721 ctgctatctg ctcattgccc tctatggctg gctcgccgcg cggggcctgg ggctgcgctc
     3781 ggcgtgaggc cggcctcggc gccgtctgtc aggctgcgcg caacacctcg cgcagacgct
     3841 ccagaaacca cccggcatgg agcggcctga agcataaagg cggacgaatt ttcagcgtgt
     3901 gcccataaag cccagccgcg ccgatgagga tgaatttctg ccgcagcaca ttgatcacat
     3961 ggctcgccat gggctggtcc ggcgcaccgc tatccggatc gcaaaaatcg agccccagga
     4021 acaaccccgc cccgcgcacg ccgccaatgc gcgcgaattc tttctgtagc ccaagcagcc
     4081 cttcctgcag cagtgccccc gtcgcggcgg cattctcgat gagcccctcc tcctcgatca
     4141 catccagcac cgcctcaccc gccgccgccg ccacagggtt gccgccgaac gtgttgaaat
     4201 agccggtctc ctggcagaag cgcgccaaga attccgggcg cgtgaccacc ccgcccattg
     4261 ggaagccatt gcccatcggc ttgcccatgg tgacgatgtc cggcacgagg ccgtgccggg
     4321 caaagcccca catcatgcct gtccggccaa aacctggctg cacttcatca
//
LOCUS       DASQCV010000261         1886 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2545811, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000261 DASQCV010000000
VERSION     DASQCV010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2545811"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..727
                     /locus_tag="VEQ16_03960"
     CDS             <1..727
                     /locus_tag="VEQ16_03960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Fe/S-dependent 2-methylisocitrate dehydratase
                     AcnD"
                     /protein_id="HYP63013.1"
                     /translation="MRPLAVLGDNITTDHLSPSNAILGDSAAGEYLHKMGLPEEDYNS
                     YATHRGDHLTAQRATFANPTLLNEMVRKEDGSVKKGSLARVEPEGKVMRMWEAIETYM
                     NRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGMGVLPLEF
                     KPGVNRLTLGLDGTETYDVKGARKPRADLTLVIHRRDGSSVEVPVTCRLDTAEEVSIY
                     EAGGVLQRFAQDFLEASAVPQAS"
     gene            794..>1886
                     /gene="prpF"
                     /locus_tag="VEQ16_03965"
     CDS             794..>1886
                     /gene="prpF"
                     /locus_tag="VEQ16_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004783077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019629 - propionate catabolic process,
                     2-methylcitrate cycle [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylaconitate cis-trans isomerase PrpF"
                     /protein_id="HYP63014.1"
                     /translation="MSHAAQIKVPATYMRGGTSKGVFFSLNDLPAVARVPGPARDRLL
                     MRVIGSPDPYGKQIDGMGAATSSTSKTVILSKSERPDHDVDYLFGQVAIDTAFVDWSG
                     NCGNLSAAVGPFAIRNGLVDAARVPKDGIAIIRIWQANIGKTIVAHVPMSNGEVQETG
                     DFELDGVTFPAAEVVLEFMDPAEEGDGGALFPTGNLVDDLEVPGIGTFKATMINSGIP
                     TIFLEAEALGYSGTELQDNVNNDAAALKKLETIRAHGALKMGLISKLEEAASRQHTPK
                     IAWVAKPKDYTASSGKKIESGDVDLLVRAMSMGKLHHAMMGTAAVAIGTAAAIPGTLV
                     NLATGGGERNAVRFGHPSGTLRVGAEAMLA"
BASE COUNT          356 a          560 c          621 g          349 t
ORIGIN      
        1 tatgcggcct ctggcggtgc tgggcgataa catcaccacc gaccatctct cgccctccaa
       61 cgccattctg ggcgacagcg cggcgggtga gtatctgcac aaaatgggcc tgccggagga
      121 ggattataac tcctacgcca cccatcgcgg cgaccatctc accgcgcagc gcgcgacctt
      181 tgccaacccc acgctcctca acgagatggt gcgcaaggaa gatggcagtg tgaagaaggg
      241 ttcgcttgcc cgcgtggagc cggaaggcaa ggtgatgcgc atgtgggagg cgatcgagac
      301 ctatatgaac cgcaagcagc cgctcatcat cattgcgggt gcggattatg gccagggttc
      361 ttcgcgtgac tgggcggcga agggcgtgcg gcttgccggc gtggaggcga ttgtcgccga
      421 agggttcgag cgcattcacc gcaccaacct catcggcatg ggcgtgttgc cgctggaatt
      481 caagccgggt gtgaatcgtc tcacgctcgg gctggacggc accgagacct atgacgtgaa
      541 gggcgcgcgc aagccgcgtg cggacctcac gctggtgatc catcgccgcg acggcagcag
      601 cgtggaggtg ccggtgacct gccgcctgga tacggcggag gaggtgtcca tttacgaagc
      661 cggtggcgtg ctgcagcgtt ttgcccagga tttcttggag gccagcgcgg ttccccaggc
      721 ctcgtaaggc tcattcacga aggcgccctc gcggcgcctt caatttttgc aagatatatt
      781 tacaggattc gtcatgtctc acgcagctca aataaaagtc cccgccacct atatgcgcgg
      841 cggcaccagc aagggcgttt tcttttcgct caatgatctg cccgcagttg cgcgcgtgcc
      901 cggcccggcg cgcgaccgtt tgctcatgcg cgtcatcggc agcccggacc cttacggcaa
      961 gcagattgac ggcatggggg ctgccacctc cagcaccagc aagacggtga ttctgagcaa
     1021 gagcgaaagg ccggatcatg atgtcgatta tctgttcggc caggtcgcca tcgatacggc
     1081 gtttgtcgat tggagcggca attgcggcaa tctttccgcc gcggtggggc cgtttgccat
     1141 tcgcaacggg ctggtcgatg ccgcacgcgt gccgaaggat ggtattgcca tcattcgcat
     1201 ctggcaggcc aatatcggca agaccatcgt tgcccatgtg ccgatgagca atggcgaggt
     1261 gcaggagacc ggcgattttg agctggatgg cgtgaccttc ccggccgccg aagtggtgct
     1321 ggaattcatg gacccggccg aggaaggcga tggcggcgcg ctcttcccca ccggcaattt
     1381 ggtggatgat ctagaggtgc ccggcatcgg caccttcaag gcgaccatga ttaattccgg
     1441 tattcccacc attttcctgg aagccgaggc gctgggctat agcggtacgg agctgcagga
     1501 caatgtgaat aacgatgcgg cggcgctgaa gaaattggaa accatccgcg ctcatggcgc
     1561 gctgaagatg gggctgattt ccaagctgga agaggcggcc tcgcgccagc acacgccgaa
     1621 aatcgcctgg gtcgccaagc cgaaggacta cacagcctcc agtggcaaga agatcgagag
     1681 tggcgatgtc gatctgctgg tgcgcgccat gtccatgggc aagctgcacc acgcgatgat
     1741 gggcacggcg gccgtggcga tcggcaccgc ggcggcgatt cccggcacgc tcgtcaatct
     1801 cgccacgggc ggcggtgagc gcaacgcggt gcgcttcggc catccctcgg gcacgctgcg
     1861 cgtgggcgcc gaagccatgc tggccg
//
LOCUS       DASQCV010000262         1926 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1551484, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000262 DASQCV010000000
VERSION     DASQCV010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1551484"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..870)
                     /locus_tag="VEQ16_03970"
     CDS             complement(<1..870)
                     /locus_tag="VEQ16_03970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003616768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate nucleotidyltransferase"
                     /protein_id="HYP63015.1"
                     /translation="MAEQTAQSGVATKAGAIGYAVTPVILSGGSGSRLWPVSRASFPK
                     QFWPLLTTQSLIQDTALRAANAGLGAPIVVCNEEHRFVVAEHLRNASIKGSRILLEPV
                     GRNSAPAVTAAALLAAEENPNTLLWIMAADSAIADEQALRAALAKACAAAQEGHIVTF
                     GITPDKPETGYGYIEVGTVLDDVPGAYVVSRFLEKPERAGAEAMLAAGGYLWNSGMFV
                     FTAKALLEEMQIHAPEVLGAVRKALAGRKEDLDFVRLERAAFTACPDISLDYAVAERT
                     ERAAVVPANIGWSD"
     gene            1054..>1926
                     /locus_tag="VEQ16_03975"
     CDS             1054..>1926
                     /locus_tag="VEQ16_03975"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HYP63016.1"
                     /translation="MQYKKLGRTGLIVSPLCLGCMSFGTAARGQHEWALDEEASRPFF
                     RQALEAGINFFDTANAYSAGTSEEITGRALKDFAKRDEVVIATKAFFPWRGAPNAGGL
                     SRKALFSAVDASLQRLGTDYIDLYQIHRWDTATPIEETMEALHDIVKSGRVRYIGASS
                     MASWQFSKAQYTARLRGWTEFVSMQNQVNLLYREEEREMLPLCEDLGIGVIPWSPLAR
                     GLLTRDWGEQTKRSQTDAFAKSMFAGSHETDRQIVDAVARIAAVRGVPRAQIALAWLL
                     NKPVITAPIIGVTKT"
BASE COUNT          363 a          686 c          539 g          338 t
ORIGIN      
        1 gtcggaccag ccaatattgg ccggcaccac ggcagcgcgc tcggtgcgct cggccacggc
       61 ataatccagg ctgatatcgg ggcaggccgt gaaggcggcg cgctccagcc gcacgaaatc
      121 caggtcttcc ttgcgcccgg ccagcgcctt gcgcaccgcg cccagcacct ccggcgcgtg
      181 gatctgcatc tcttccagca gcgccttcgc ggtgaacaca aacatgccgg aattccacaa
      241 atatccaccc gccgccagca tcgcctcggc gccggcgcgt tccggcttct ccaagaagcg
      301 gctcaccaca taggcacccg gtacgtcgtc cagaaccgtc cccacctcga tatagccata
      361 gccggtctca ggcttgtccg gggtgatgcc gaaggtcaca atatgccctt cctgcgccgc
      421 cgcgcaggcc ttcgccagcg ccgcgcgcag cgcctgttca tcggcaatcg ccgaatccgc
      481 cgccataatc cacaacagcg tgttagggtt ctcctcggcc gccagcaacg ccgccgcggt
      541 caccgcgggc gccgaattgc gccccaccgg ctcaagcaga atccggctgc ccttgatgct
      601 ggcattccgc agatgctcgg ccacgacaaa acggtgctcc tcgttgcaca ccacaatcgg
      661 cgcaccgagt cctgcattgg cggcacgcag cgccgtatcc tggatcagcg attgagtcgt
      721 gagcaacggc cagaattgtt tcggaaagct cgcgcgcgat accggccaca agcgtgaccc
      781 cgagccgccg gagaggatca cgggcgtcac ggcatagccg atggccccag ctttggtcgc
      841 aactcctgat tgcgctgtct gctccgccat ttccacctcc aaatgctgca tcgcacattt
      901 gcatattcgg ctgcgcgctg acaaccggtt ttcccaacca tgcgtcagaa cgtgagattc
      961 tctccaaaat tttacaacat cttcatgtcc actcgcctgc ttgacgccgc gccgcgacag
     1021 gtttttcctc gccccatacc aggggaaaac cgcatgcaat ataaaaaact tggccgcacg
     1081 ggcctcatcg tctcgccgct ctgcctgggc tgcatgagtt tcggcactgc cgcgcgcggg
     1141 cagcatgaat gggccctgga cgaggaggca agccgtccct ttttccgcca ggcgctggaa
     1201 gccgggatca atttcttcga cacggccaat gcctattccg ccggcacgtc cgaggaaatc
     1261 accggccggg cgctgaagga cttcgccaag cgcgacgagg tggtaatcgc caccaaagcc
     1321 ttcttcccct ggcgcggcgc gcccaatgcc ggcgggttgt cgcgcaaagc gctgttttcc
     1381 gcggtcgatg ccagcctgca gcggctcggc accgattata tcgatctcta ccagatccat
     1441 cgctgggaca ccgccacccc catcgaggag acgatggagg cgctgcatga catcgtgaaa
     1501 tccggccgcg tgcgctatat cggcgcctcc tcaatggcct cctggcaatt ctccaaggcg
     1561 caatacacgg cgcgtctgcg cggctggacg gaattcgtct ccatgcaaaa ccaggtcaat
     1621 ctgctctacc gcgaggagga gcgggaaatg ctgcctttgt gcgaagatct cggcatcggt
     1681 gtcattccct ggagcccgct ggcgcgcggc ctgctcacgc gcgactgggg cgagcagacc
     1741 aaacgctcgc aaaccgacgc cttcgccaaa tccatgttcg ccggcagcca tgaaacggac
     1801 cgtcagatcg tcgacgcagt ggcccgcatc gctgcggtgc gcggcgtgcc ccgcgcccaa
     1861 atcgccctgg cctggctgct caacaaaccg gtcatcaccg cccccatcat cggcgtcacc
     1921 aagacc
//
LOCUS       DASQCV010000263         1592 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_888813, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000263 DASQCV010000000
VERSION     DASQCV010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_888813"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1592
                     /locus_tag="VEQ16_03980"
     CDS             <1..>1592
                     /locus_tag="VEQ16_03980"
                     /inference="COORDINATES: protein motif:HMM:NF014036.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HYP63017.1"
                     /translation="VRNCIGPFLDGQAPEPLHIAVIGGAGAGKSTVANMLSGAREAEA
                     NPQAGFTRHPIAYTSANGALSWPTHVGFLGPLQRLPDPAPANLDEDVYQVRRVPPVDG
                     FSLLERFIVWDCPDMTTWAATSYVSRLLEIAGLADVIVYVASDERYNDEVPTQFLHLL
                     LQTGKPVVACLMKMKEPDAPAILAHFQREVLDRLATGTIAALAIPFLTPEQLADPARL
                     ASGYRIPLLNQVAVLGEPPAAARRRAVQWAVHYLVSAQARLLGVARQDLAALQEWRAA
                     VQAGKAEFEQRYYREYLTSEKFRRFDEALLRLLELLELPGAGRILSSTLWLLRTPYRL
                     VKGMLSRAFRRPETASFPEQPVLEEALAGWLDLLRKEAARHAQSHPVWAHIEKGFAGG
                     LGDQARERFHQGFRSFQLGLAEEVDRTARSIYEELEKNPAMLNTLRGGKLTLDLAAVA
                     AAVATGGSHWPLDFVLVPLYASITHQLVELMGKQYVDNQREVARNRQQTLVVQHLSGP
                     LAEWLSQWPATGGSAYERLHQT"
BASE COUNT          281 a          507 c          490 g          314 t
ORIGIN      
        1 tcgtgcgcaa ttgcatcggc ccgttcctcg atggccaggc ccctgagcct ttgcacatcg
       61 cggtgatcgg cggcgcgggc gcgggcaaga gtacggtggc caacatgctc agcggcgctc
      121 gcgaagcgga ggccaatccc caggccggct ttacgcgcca tcccatcgct tacaccagcg
      181 ccaatggagc cttgtcctgg cccactcacg tgggcttcct cggcccgctg caacgcttgc
      241 ctgatcccgc gcccgccaat ctcgacgagg atgtctacca ggtccgccgc gtgccgccgg
      301 ttgatggttt cagcttgctc gagcgcttca tcgtctggga ttgtcccgat atgactacct
      361 gggcagccac cagctacgtc tcccgtttac tggaaatcgc agggctggcg gatgtgatcg
      421 tctatgtcgc ctcggatgaa cgctacaacg atgaagtgcc cacgcaattc ttgcacctgc
      481 ttctccagac cggcaagccg gtggtggcct gtctcatgaa aatgaaggag cctgacgctc
      541 ctgcgattct tgcacacttc cagcgtgagg tgctcgaccg cctggcgacc ggaacgattg
      601 ctgccctggc aattccgttt ctgacgcccg aacagctcgc cgatccggcc cgtttagcga
      661 gcggctaccg cataccgtta ttgaatcaag ttgcggttct gggcgagccg ccagctgccg
      721 cacgcaggcg ggcggtccag tgggccgtcc attacctggt gtcggctcag gcacggttgc
      781 tcggcgtggc ccggcaggat ctcgcggcat tgcaagaatg gcgggcggca gtccaggccg
      841 gcaaggcgga attcgagcaa cgctactacc gcgagtactt gacatccgag aaattccggc
      901 gatttgatga ggccctcttg cgcttgctgg aattgttgga acttcccggt gccggccgga
      961 tcctcagcag taccttgtgg ttgctgcgca ccccctaccg cctggtgaag ggcatgctgt
     1021 ccagggcgtt ccgccggccg gagactgcca gcttcccgga gcagccagtg ctggaggaag
     1081 cgttggcggg ctggttggat ctgctgcgca aagaagccgc ccggcacgct cagagccacc
     1141 cggtttgggc ccacattgaa aagggattcg ccggcggact gggcgatcag gctcgcgagc
     1201 ggtttcacca ggggtttcgc agtttccagc tcggattggc cgaagaggtg gaccgcaccg
     1261 cccggtccat ctatgaagaa ctggagaaga acccggccat gctaaacacg ctacgcggcg
     1321 gcaaattgac tctggatttg gccgccgttg ctgctgcggt tgccacgggc ggatcccatt
     1381 ggccgctcga ttttgtcctg gttccgctat atgcctcgat cacgcaccaa ctggtggaat
     1441 tgatgggcaa acaatacgtc gacaaccagc gcgaagtcgc ccgcaaccgc caacagacgc
     1501 tggtagtgca acatctatcc ggtcctctcg cggaatggct gagccaatgg cccgcgaccg
     1561 gcggttccgc ttatgagcgc ttgcaccaaa cc
//
LOCUS       DASQCV010000264         1862 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2711947, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000264 DASQCV010000000
VERSION     DASQCV010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2711947"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..925)
                     /locus_tag="VEQ16_03985"
     CDS             complement(176..925)
                     /locus_tag="VEQ16_03985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63018.1"
                     /translation="MKPLAVALVCALIGGGAYAKDAEGCMAAAGAIGPDFAMPHVAAA
                     IAKKRLDVVVIGSASSELAGPGGANLAYPTRFEAALGRLLPGVAVKVTTYTRPRESAE
                     EMADKLSRIVAEAKPAVVVWQTGTADAIRGIDPDDFRLALDDGIDTMQAAGADTVFIN
                     MQYSPRTEPILAVGAYADAMHMLALQREVILFDRLSIMKRWSEAGVFDLYAATRKTDI
                     AEQVHDCLGRLLANVVVDAAKLTNGDKKEIR"
     gene            complement(922..>1862)
                     /locus_tag="VEQ16_03990"
     CDS             complement(922..>1862)
                     /locus_tag="VEQ16_03990"
                     /inference="COORDINATES: protein motif:HMM:NF021633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="OpgC domain-containing protein"
                     /protein_id="HYP63019.1"
                     /translation="ARILKRAWQVYVAHVFLFAIYMAEISYVAATFENPLYGEEMGIF
                     DFLRQPDVTLVQALLLKFKPANMDVLPLYIVLLAGFPPMLWVLLRAPAAGLGASLLLY
                     VLTWNFGWNLPAYPNGDWVFNPFAWQLLFVFGAWCGLGGAKRLAPLIQSRATLVLAIV
                     YLLFAGAIALTWYIPGAERFVPRWLEDWMYPIDKTNLDVLRFAHFVALAVLTVRLVPQ
                     QWAFLHSIWLRPAILCGQHSLEIFCLGVFLSFAGHFAMVEVNEGIGMQVAVSVLGIVA
                     MVATAALISWYKRIEGRSPGSRPGPPGAATLSGGGA"
BASE COUNT          396 a          588 c          585 g          293 t
ORIGIN      
        1 atccgccgcg ccatgtgcgt gagcggatag gacagccgcg tcagcgagcc gttgtcggcg
       61 caggcatagg tcgcggcctc agcgctggcc ggaatcggcg caagcccagc cgaggcggct
      121 gccagtgaca agacgaccgc aatgtgggcg cggaaacccg acggcgaaaa catattcaac
      181 gaatctcttt tttatcgcca tttgtcaatt tcgccgcgtc gaccacgaca ttggccagca
      241 ggcggccgag gcaatcatgg acctgctcgg cgatgtcggt ttttcgcgtt gcagcataaa
      301 gatcgaagac gccggcctca ctccaccgct tcatgatcga aaggcgatcg aataggatga
      361 cctctcgctg caatgcgagc atatgcatcg catctgcgta agcacccacc gccagaatgg
      421 gttcggtgcg cgggctgtat tgcatgttga taaacacggt atcggcgccg gccgcctgca
      481 tcgtgtcgat gccatcatcg agggcgaggc gaaaatcgtc gggatcgatg ccgcggatcg
      541 cgtcggcggt gccggtctgc cagaccacca cagcgggctt ggcttccgcg acgatccgcg
      601 acaacttgtc cgccatttcc tcggcgctct cccgcgggcg cgtataggtc gtgactttga
      661 ccgcgacacc gggcagcagc ctgcccaggg ccgcctcgaa gcgggttgga taggcgagat
      721 tggcgccgcc cgggccggca agctccgagg aggcgctgcc gatcaccacc acatcgagcc
      781 gcttcttggc gatcgcggcg gcgacatggg gcatggcaaa atcaggccct atcgcgccgg
      841 cggcggccat gcagccctcg gcgtccttgg cgtatgcgcc gccaccgatc agggcgcaaa
      901 ccagcgccac ggccaatggt ttcatgcccc tcctcccgag agggtagcag cacctggcgg
      961 tccaggtcgc gatccgggac ttcgtccttc tatccgcttg taccacgaaa tcagggcggc
     1021 tgtcgcaacc attgcgacga tgcccagcac actcacggcg acctgcattc cgatgccttc
     1081 attgacctcg accatggcga aatggcccgc aaaggacagg aataccccca ggcagaagat
     1141 ctccagggag tgctggccgc acaggatcgc cggccgcagc cagatcgaat gcaggaacgc
     1201 ccattgctgc ggcaccaggc gaacggtcaa tacggcgagc gccacgaaat gagcgaagcg
     1261 cagcacgtcc agattggtct tgtcgattgg atacatccag tcttcgagcc atctgggcac
     1321 gaaacgctcg gcccccggga tgtaccaggt caaggcgatg gcaccggcga agaggagata
     1381 gacgatcgcg aggacaagag tggcccgcga ttggatcagg ggtgcgaggc gcttcgcccc
     1441 gccgagccca caccatgcgc cgaacacgaa gagcagctgc caagcgaacg ggttgaacac
     1501 ccaatcgccg ttcggatagg ccggcaggtt ccatccgaaa ttccaggtca ggacatagag
     1561 cagcaaggaa gcgccgagac cggccgcagg cgcccgcagc agcacccaca gcatgggcgg
     1621 aaaccccgcg agcagcacga tgtagagcgg cagcacatcc atgttggcgg gcttgaactt
     1681 cagcaacagc gcctgcacca gcgtgacgtc cggctggcgg agaaagtcga aaatgcccat
     1741 ttcctcgcca tagagcgggt tctcgaaggt cgcggcgaca taggagattt ccgccatgta
     1801 gatcgcaaac aggaaaacat gggcgacata gacctgccat gcgcgcttga ggatgcgggc
     1861 gc
//
LOCUS       DASQCV010000265         2151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1883305, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000265 DASQCV010000000
VERSION     DASQCV010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2151
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1883305"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VEQ16_03995"
     CDS             complement(<1..508)
                     /locus_tag="VEQ16_03995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63020.1"
                     /translation="MATSEQATQAAQRLRAGRPWTDDEFDEHFDGLVDLVGRVSGEHF
                     LAVAFWWHATQRGYEKGNLDQLAKLFRSGVPHSRQVDQMLADMFGLCKLMRKRRGGQR
                     KLFGMSAAAQYVQAKRTVRRLMSGEIKLINELTTKELLWKDPSGSPLRVRSRAGLLPM
                     NSEVRLLEV"
     gene            complement(532..1887)
                     /locus_tag="VEQ16_04000"
     CDS             complement(532..1887)
                     /locus_tag="VEQ16_04000"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HYP63021.1"
                     /translation="MTKPLTAAAVKKYAPHPGQRRIIRDAGARSLFLVITPSGHKSWL
                     MRFRTTGGRIGKLVLGPVDLSGRELTGDPAVGQPLTLAAARQLAAEVLRQRALGHDPV
                     ADHKARKLRQRAAVQEAASNTFGAAAQDFITKYSRQRVRRWKEQARLLGLQPTAEGLE
                     VIPGGLAARWADKPLAQIDGHDIHQLVVETRERGAPGLERRSDGPTETRARAMLTCLS
                     RMFRWLVQHRRVETNPCTGVHRPEASKARDRVLSNDEIKAFWRATDGTEIRPQFGAVL
                     KLLLLTGCRLNEIAALRWEELSADGTQINLPGSRTKNHRPHVVPMVPLAQSIIAAMPR
                     IADCPYVFTTNGKAPVAIGSKVKNRLDEAMGVREWRIHDLRRTAVTGMAELGIRPDVI
                     ELCVNHVSGTRGGIAGVYNRSELLPERRLALERWAVQVQGIVSGKPAKVVQLHKRGGA
                     P"
BASE COUNT          340 a          715 c          680 g          416 t
ORIGIN      
        1 ccacctcgag gaggcgcact tcgctgttca tcggtagtag cccagcgcgt gaccgaaccc
       61 gtagagggct acccgacggg tccttccaca gcagctcttt ggtcgtcagc tcgttgatca
      121 gcttgatctc gccgctcatc aggcgccgca cggtgcgttt cgcctggacg tattgcgccg
      181 ccgccgacat cccgaacagc ttgcgctgac cccctctcct cttcctcatc agcttgcaca
      241 agccgaacat gtcggcgagc atctgatcga cctgtcggga atgcggcacg cccgagcgaa
      301 acagcttggc aagctggtcg agattgccct tctcgtagcc ccgctgcgtg gcgtgccacc
      361 agaacgccac cgccaaaaaa tgctcaccgc tcactcgacc gacgaggtca acaagcccat
      421 cgaagtgctc gtcaaattca tcatccgtcc acgggcggcc ggcgcgcagt cgctgcgccg
      481 cttgggttgc ttgctcgctg gtcgccatct gttcttttgc agatcgcctc ctcacggcgc
      541 gcctccccgc ttgtgcagct gcaccacctt ggctggcttg ccgctgacaa ttccctgcac
      601 ctgcacggcc cagcgctcca gcgccaagcg ccgctccggc agcagctcag accggttgta
      661 gacgcccgcg atgccgccgc gtgtgccgct gacgtgattg acacagagct cgatgacgtc
      721 cggccggatg ccgagctccg ccatgccggt gacggcggtc cggcgcagat cgtgaatgcg
      781 ccattcccgc acgcccatgg cttcgtccaa tcggttcttg accttgctgc cgatggctac
      841 cggcgccttg ccgttggttg tgaacacgta tggacaatcg gcgatgcgcg gcatcgcggc
      901 gatgattgac tgcgctagcg gcaccatcgg caccacatgc gggcgatggt tcttcgtcct
      961 gctgccgggc agattgatct gggtgccatc cgcgctcagc tcctcccagc gcaaagcggc
     1021 gatctcattg agccggcagc cggtgagcag cagcaatttc agcacagcgc cgaattgcgg
     1081 ccgtatctcc gtgccgtcag tcgcccgcca gaaggccttt atttcatcgt tgctgaggac
     1141 acggtcgcgg gccttcgatg cctctggccg atgcaccccg gtgcagggat tcgtctccac
     1201 ccggcggtgc tgcaccagcc accgaaacat gcgggagagg caagtgagca tcgcccgggc
     1261 ccgtgtctcg gtcgggccat cactgcgccg ctccaggccg ggcgcgccac gctcgcgcgt
     1321 ttcaacgacc agctgatgga tgtcatggcc gtcgatctga gccagcggct tgtcggccca
     1381 gcgtgcggca aggccaccgg ggattacctc gaggccctcc gccgtcggct gcaggccgag
     1441 cagccgtgct tgttccttcc agcggcgcac acgctggcgc gaatatttgg tgatgaagtc
     1501 ctgggcggcg gcgccgaacg tattgctggc agcctcctgc acggcggcac gctggcgcag
     1561 cttgcgggct ttatggtcgg caaccgggtc gtgccccagg gcgcgctggc gcagcacctc
     1621 tgctgccagc tggcgggcgg cggcgagcgt gagcggctgt ccgactgcgg gatcacccgt
     1681 cagctcgcgg ccgctgaggt cgacagggcc cagcaccagc ttgccgatgc ggccgccggt
     1741 ggtgcggaat cgcatcagcc acgacttgtg gccgctgggc gtgatgacga ggaacagact
     1801 gcgggcgccg gcatcgcgga tgatacggcg ctggccaggg tgcggcgcgt acttcttgac
     1861 ggccgcagcg gtcagcggtt tggtcatgcg ttggtctcca gggcgcacac agggtgcacg
     1921 gctcggggtg ttaggcgctg ttgcccagtg ttggtaacat atgccaacaa agcccggaag
     1981 accaggggtt taggctgaaa tagctggggg tcactgtggc cttatgtggc gctatgatag
     2041 gccctgccaa cgcatttcta atccgcaggt cgcaggttcg aatcctgccg gggacgccac
     2101 ctagcagatt tgcagtttga ttcatcacag cttttttcgt tttttgtcca a
//
LOCUS       DASQCV010000266         1503 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1718510, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000266 DASQCV010000000
VERSION     DASQCV010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1718510"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..578)
                     /locus_tag="VEQ16_04005"
     CDS             complement(<1..578)
                     /locus_tag="VEQ16_04005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012975474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63022.1"
                     /translation="MSSGNPNPAASAADRQPARELEARINALVAGRSADPFGLLGPHP
                     VPSGWAIRFFIPWAVEASIIFRNPAHSPAKIAGAVKVRQEGLFEATWPSEQTTAPQPA
                     SYKIQYHTQQGDTFDVFDPYAFPYLLTDFDLHLIGEGRHYDTYEKLGAHLHTVDGVAG
                     THFAVWAPGARRVSVVGTMNGWDGRVHAMRPRG"
     gene            759..>1503
                     /locus_tag="VEQ16_04010"
     CDS             759..>1503
                     /locus_tag="VEQ16_04010"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HYP63023.1"
                     /translation="MLACLAAMSARHTSAQERTQGRSVVMSKGGIVAAESPLAAAAGV
                     RILDGGGNAVDAAIATNAMMGVVEPMMNGIGGDLFAIVYDAKANRLYGLNASGWAPKG
                     LTIDYLHKQGLKEMPQKGIHAVTVPGAVEGWQKLADKFGRKKLAEDLAAAIATARSGF
                     PVPELAAAYWSSGVELLHSNEAASKVYLPNDRAPKPGEVFRNEDLAWSLEQIAEHGRD
                     AFYKGEIAGRILAAEKMHGGPMVEEDLSKF"
BASE COUNT          292 a          425 c          542 g          244 t
ORIGIN      
        1 ccgcgcggcc gcatagcatg gacccggccg tcccagccgt tcatggtgcc gacgacgctg
       61 acgcggcgcg caccgggagc ccacaccgcg aaatgcgttc cggcgacccc gtcgacggtg
      121 tgcagatggg cgcccagctt ctcgtaggtg tcgtaatggc ggccttcgcc gatgaggtgc
      181 agatcgaagt cggtgagcag gtacgggaac gcgtacggat cgaaaacgtc gaacgtgtcg
      241 ccttgctggg tgtggtactg gattttgtaa ctggcgggtt gcggtgccgt ggtctgctcc
      301 gagggccacg tagcctcgaa cagtccttcc tggcgcactt tcactgcgcc ggcaatcttc
      361 gccggtgaat gcgcggggtt cctgaagatg atgctggctt cgacggccca gggaatgaag
      421 aagcgaatgg cccagccgga cggaacggga tgggggccca gcaggccgaa agggtcggcg
      481 ctgcgcccgg cgacgagcgc gttaatgcgc gcttcgagtt cccgggccgg ctgcctgtcg
      541 gcggctgacg cggccggatt tgggtttcct gaagacaagc cagatgctcc cgagcgcgac
      601 cctgccggcc ggcgccagga aattctaaac actctccatg gtaatgcaaa gtttcctgag
      661 gcgagagccg tgtatagtcc cacggtcgag gcgggaagcg ccggaggaac cgaatgccgc
      721 tagagaagcg aaccacaggg tggaggaagc cggttttggt gctggcgtgc ctggccgcaa
      781 tgtcggcgcg gcatacgagt gcgcaggagc gcacccaggg gcggtcggta gtgatgtcta
      841 agggcggaat tgtggcggca gaatcgccgc tggcggccgc ggccggtgtg cgcattctcg
      901 atggcggcgg gaacgcggtg gacgccgcca tcgccacgaa cgccatgatg ggcgtggtgg
      961 aaccgatgat gaacggcatc ggcggggacc tgttcgcgat cgtctacgac gcgaaagcca
     1021 accggctcta cggcctgaac gcgagcggct gggccccgaa gggactcacc atcgactacc
     1081 tgcataagca gggcttaaag gagatgcctc aaaagggcat ccatgcggtg accgttcccg
     1141 gggcggtcga aggctggcaa aaacttgccg acaaattcgg gcgcaagaag ctggccgagg
     1201 atttggcggc ggcgatcgcc accgcgcgaa gcggttttcc ggtgcccgaa ctcgccgcgg
     1261 catactggtc gagcggcgtg gagttgctgc attccaacga ggcagccagc aaagtgtatc
     1321 tgccgaatga ccgggcgccg aaaccgggcg aggtgttcag gaatgaggac ctggcctggt
     1381 cgctagagca gattgccgag catggccgcg acgccttcta caaaggagag atcgcaggca
     1441 ggattctggc ggcagagaaa atgcacggcg ggccgatggt cgaagaagac ttgagcaagt
     1501 ttg
//
LOCUS       DASQCV010000267         1758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_889669, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000267 DASQCV010000000
VERSION     DASQCV010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1758
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_889669"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VEQ16_04015"
     CDS             complement(<1..294)
                     /locus_tag="VEQ16_04015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63024.1"
                     /translation="MYTNVNLESHIAALLLLGSGGLIVLLLIMAAVLFFARPGWVRYP
                     LLAAAAVGLGYGLLLAAFSLISSEQTLPRGEEKHFCELDCHIAYSVQDVRRVKA"
     gene            complement(390..686)
                     /locus_tag="VEQ16_04020"
     CDS             complement(390..686)
                     /locus_tag="VEQ16_04020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63025.1"
                     /translation="MDGQRINRASSRVVLVLSVLALLTVLAGLSQPRQAPATDEGALA
                     HIFQLSIVALGPAILLFLLTADWRQPLESVRSLVVPAAALVLAFAALYYLEHYR"
     gene            complement(741..1112)
                     /locus_tag="VEQ16_04025"
     CDS             complement(741..1112)
                     /locus_tag="VEQ16_04025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006558186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HYP63026.1"
                     /translation="MAKQAADSPRSGLNLARRRPAPRGAAALELDPVIHERVRLGIIS
                     ALAVNDELAFNDLKKLLEITDGNLSVHARKLEHAGYVKCAKSFVGRQPRTQFRLTSAG
                     RRALEGYLQQMESLIRSARKR"
     gene            complement(1105..1722)
                     /locus_tag="VEQ16_04030"
     CDS             complement(1105..1722)
                     /locus_tag="VEQ16_04030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63027.1"
                     /translation="MKDSRPCRQNSRRWNVPAEPSALEHLEVIRRTMERSTAFTAVSG
                     WGYCAMGVTALIAAGIAMRQATTEAWLAVWLAEALVAVTLALVAMHWKAARMGTPILS
                     VPGRRLFVGLLPALLAGGVMTVALLRSGDVRQIPGVWLLLYGVAVMQAGAFSVRTIPL
                     MGAGFVLTGAVALPQPWWWANVWLAVGFGFVHIAFGVYIARRHGG"
BASE COUNT          354 a          587 c          538 g          279 t
ORIGIN      
        1 cgccttcacc cgccgcacgt cctgcacgga gtacgcgata tggcagtcga gctcgcagaa
       61 gtgtttctct tcaccgcgcg gcagcgtctg ctcggagctg atcaaagaga aggccgccag
      121 cagcagcccg tagcccagcc caaccgcggc cgccgccagc aggggatagc gcacccagcc
      181 cgggcgcgcg aagaacaaaa ccgcagccat gatcagcagc agtacgatca gaccgccgct
      241 gcccagcaac agcagggcag cgatgtggga ttccagattg acattggtgt acatcagggg
      301 cagctccaca ggctagtttc aagcgcaatc taagcagtcc aggagaatcc ggctgcagct
      361 cggaatcgtg ggcgggaatg gttgcgcgtt cagcggtagt gctccaggta atagagcgcg
      421 gcaaatgcca ggaccaaagc cgcggccgga acaaccagcg atcgcacgct ttctaacggc
      481 tgcctccaat cggcagtgag gaggaatagt aagatcgccg gccccagcgc gacgattgaa
      541 agctggaaga tatgggccaa cgcaccttcg tccgtcgctg gcgcttgccg gggctgggaa
      601 agtccggcga gcacagtaag cagcgctagc actgagagca ccagtacgac tctgctgctg
      661 gcgcgattga ttcgctgccc gtccacggat tgtctccttt ccctaggagc taagagtcca
      721 cccggcgccc gggtccggcg ctaacgctta cgcgccgagc ggatcagcga ctccatctgc
      781 tgcagatacc cctccagcgc gcgacggccg gcactggtca ggcgaaactg cgtgcgcggc
      841 tgacggccta cgaaggattt agcgcatttc acgtagcctg catgctccag cttgcgggcg
      901 tgaacgctca gatttccgtc ggtgatctcc agcagtttct tcaggtcgtt gaaggccagc
      961 tcatcgttta cagccagggc gctgatgatg cccaaccgca cccgctcatg aatcacggga
     1021 tcgagctcca gcgccgctgc tccgcgcggc gcggggcgcc tgcgcgcgag gttgagtccg
     1081 gatcttggcg agtcagctgc ctgcttagcc accgtgtctc ctggcgatgt ataccccgaa
     1141 agcgatatgc acgaacccga atcccacggc cagccagacg ttggcccacc accatggctg
     1201 gggcagcgca accgctccgg tcaagacaaa ccctgctccc atcaggggaa tggtgcgcac
     1261 cgaaaatgcg cctgcctgca ttaccgccac tccgtacagc agcagccaaa cgccggggat
     1321 ctgccgcaca tcgccggatc gcagcagcgc cacggtcata actccgcccg cgagtagcgc
     1381 cggcagcagg ccaacgaaaa gtcggcgccc cggcacggag aggatcggcg tacccatgcg
     1441 ggcagccttc cagtgcatcg ccaccagggc aagcgtgacc gcaaccaggg cttcagccag
     1501 ccacaccgcc agccaggcct ccgtcgtagc ctgccgcatg gcgatccctg ctgcgatgag
     1561 cgcggtcacc cccatggcgc agtatcccca gcccgacacg gcggtaaagg ccgtgctgcg
     1621 ttccatggtc cggcggatga cctccagatg ctccagcgcc gaaggctcgg cggggacgtt
     1681 ccatcttcgg gaattttgcc ggcagggacg ggagtccttc atggcaagcg actctatcgt
     1741 gacctagccg cggttgtc
//
LOCUS       DASQCV010000268         1760 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_889694, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000268 DASQCV010000000
VERSION     DASQCV010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_889694"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1340
                     /locus_tag="VEQ16_04035"
     CDS             <1..1340
                     /locus_tag="VEQ16_04035"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYP63028.1"
                     /translation="MIATLVFAVPPTVRATTLALGQVPAEIQDFGRMAGCTRRQLLWR
                     VLVPSARPLLMVGVNQVIMMALNMVIISSMIGAGGLGLDVLLALRALKLGAAIEAGIS
                     IVLLAIVLDRLSQALALRTTRAGGLFQGNRLWRHPLFLLVLAILLVTTALSPAVPFLA
                     QLPKSFTVTTAPLWDSGIRWITVHFFDAIEAGRVWFLLHVLKPVKLFLLALPWLSCLL
                     LLTLAGLRLGGARLALVIALLTAACAVFGLWDKAMTTLYLCAVSTVIACAIGFPIGIL
                     AARSAIANRIITVIVDTLQTIPAFVYLIPAVMLFRVGDVAAMIGIVLYALTPAIRYTD
                     HGLRKVPPLLIEAAVMSGCTRRQLLWKVQFPLALPELLLGINQVIMLALSMDIIAAMI
                     GTRDLGQEVFSALATANVGRGLLAGLTVAFIGIIADRLMGAWSRSLRARFGLT"
     gene            complement(1554..>1760)
                     /locus_tag="VEQ16_04040"
     CDS             complement(1554..>1760)
                     /locus_tag="VEQ16_04040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63029.1"
                     /translation="NAIANEPFLAEGQAHHKFRPLAVLPDSALREGAYDSIFSNQAYR
                     QPDPAKGVTSYGYKVLKFATRTNP"
BASE COUNT          233 a          607 c          568 g          352 t
ORIGIN      
        1 ccatgatcgc aacgctggtc ttcgccgtgc cgcccacggt gcgggcgacg accctggcgc
       61 tgggccaggt gcccgcggag atccaggatt tcgggcgcat ggccggctgc acccggcgcc
      121 agctcctctg gcgcgtgctg gtgccctcgg cgcgcccgct gctgatggtg ggcgtcaacc
      181 aggtcatcat gatggcgctc aacatggtca tcatctcatc gatgatcggc gccggcgggc
      241 tcggcctcga cgtgctcctg gcgctgcgcg cgctcaagct gggtgcggcg atcgaggccg
      301 gcatctccat cgtcctgctg gcgatcgtgc tcgatcgcct gagccaggcg ctggcgctca
      361 ggacaacgcg ggcgggcggc ctgttccaag gcaatcggct ctggcgccat ccgctcttcc
      421 tgctggtgct ggcgatcctt ctcgtgacca cggccctcag cccggccgtg cccttcctgg
      481 cccagctgcc gaaatccttc accgtcacca ccgcgccgct ctgggattcc ggcatccgct
      541 ggatcacggt ccatttcttc gacgcgatcg aggccggccg ggtctggttc ctgctccatg
      601 tgctgaagcc ggtgaagctc ttcctgctgg cgctgccctg gctctcctgc ctgctgctgc
      661 tgacgcttgc gggccttcgg ctcggaggag cgcgcctggc tttggtgatc gcgctcctga
      721 ccgcggcctg cgctgtgttc gggctctggg acaaggcgat gacgacgctc tatctctgcg
      781 ccgtctccac cgtcatcgca tgtgccatcg ggtttcccat cggcatcctc gcggcccgct
      841 ccgccatcgc caacaggatc atcaccgtca tcgtcgacac gctgcagacg atccccgcct
      901 tcgtctatct gatcccggcg gtgatgctgt tccgtgtggg cgatgtggcg gcgatgatcg
      961 gcatcgtgct ttatgcgctg acgccggcga tccgctacac cgatcacggg ctgcgcaagg
     1021 tccccccgct gctgatcgag gccgcggtca tgtcgggctg cacgcgccgc cagctcctgt
     1081 ggaaggtaca gtttcccctg gcgctcccag agctgctgct gggcatcaac caggtgatca
     1141 tgctggcgct ctccatggac atcatcgccg ccatgatcgg cacccgcgat ctgggacagg
     1201 aggtcttcag cgcgctcgcc accgccaatg tcggccgcgg tcttctggcg ggcctgaccg
     1261 tggccttcat cggcatcatc gccgaccgcc tcatgggcgc ctggagccgg agcctgcgcg
     1321 cccgcttcgg gctgacgtaa ggcggaaggg gcagtcatta ttttcgtcat ggccgggcga
     1381 agacccggcc atccacgtgg ccgttcagga cacgatgctt ccgcaacgag tcctgcccat
     1441 aggttcgccc gattactgct gcatcgggtt catgcccatc gacgtggatg gccgggacaa
     1501 gcccggccat gacgcaaggg aagcgagtcc ttctgtgcct ctttgctttc ggcctacgga
     1561 ttcgtccggg tggcgaactt caggaccttg tagccgtagc tggtgacacc cttggccgga
     1621 tcgggctggc ggtacgcctg gttcgagaag atcgagtcat aggcgccctc gcggagcgcc
     1681 gaatccggca gcaccgcgag cggccggaat ttgtgatgcg cctggccctc ggcgaggaag
     1741 ggctcgttcg cgatcgcgtt
//
LOCUS       DASQCV010000269         2290 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3045336, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000269 DASQCV010000000
VERSION     DASQCV010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3045336"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..427
                     /locus_tag="VEQ16_04045"
     CDS             <1..427
                     /locus_tag="VEQ16_04045"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP63030.1"
                     /translation="LDVPLGHSIWHEDGYADYGADYYQGPGKGVIDLICRNHQGLLHH
                     SHQVSNILIEVAGARAGSESYCTATLRMRREGRLVQMMVWSRYVDRWSLRDGRWGLEK
                     RIAIRDFDEIRDVTPMYEHEVGRRDENDPSYAALGGIKK"
     gene            424..1458
                     /locus_tag="VEQ16_04050"
     CDS             424..1458
                     /locus_tag="VEQ16_04050"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYP63031.1"
                     /translation="MKAAYIQNGRVCVGEMPEPVPGKGQALVRTHSCGMCASEAHFLH
                     ARQNVIDLSRKHGGAYASLDMSRPFVPGHEYVGEVLDYGPGSKRTVKPGRKVTSVPVM
                     RQQGGHAVIGFSHDCPGGFGELMLLDEDVLMEVPSGLDDDLAAMTEPLAVGLEHARRG
                     LPDKDDAALVVGCGAIGLGVIAGLKLMGIAPIAAADFHESRRALALRMGADIAIDPRG
                     MSPYAPIPDLGGRQVNLVYECVGLPGLMQQIITSVGFGARIVMGGYCMEPEQFYVFAA
                     QNKRLTVHFAAGEEQQDMELALRSIADGSIDVKSWLGERIGLNGVAEAMAQMSGPLAP
                     VRTVVDPRRW"
     gene            1461..2264
                     /locus_tag="VEQ16_04055"
     CDS             1461..2264
                     /locus_tag="VEQ16_04055"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HYP63032.1"
                     /translation="MSRLGIELLSVFGMNPVEHAELAADLGCAYISSGLTQLPFNPHD
                     YESWSLRDDAALRRRLMDVLRDRGVTISLGEGFTIRPGADMAERAADMDIMAELGVLC
                     AGASTMEPDVARMRDQCAILAELAAERGMKASIELVPSSSAGTLAEASAVVRHVNRPN
                     FGLLLDSMHVFRSGGTLEELRALDPAVIFYAQLCDVPLPAREPDYMREAMFNRLAPGQ
                     GELPLAAFVAALPQHVPIGLELPMLAQAEAGIGPRERLAPAVAAAKALL"
BASE COUNT          367 a          576 c          872 g          475 t
ORIGIN      
        1 gctcgatgtg ccgcttggcc attccatctg gcatgaggat ggctatgccg attatggcgc
       61 cgattattat caggggccag gcaagggcgt gatcgacctg atctgccgca accatcaggg
      121 gctgctgcat cattcgcacc aggtctcgaa tattctgatt gaggttgcgg gcgcgcgggc
      181 cggtagcgag agctattgca cggcgacctt gcgcatgcgg cgcgaggggc ggctggtgca
      241 gatgatggtg tggtcgcgtt atgttgatcg ctggtcgctg cgtgatgggc gctgggggtt
      301 ggagaagcgc atcgccatac gcgatttcga tgaaattcgt gatgtgacgc cgatgtatga
      361 gcatgaggtg ggacggcggg acgagaatga tccctcttat gccgcgctgg ggggaattaa
      421 aaaatgaagg cagcctatat ccagaatggc cgtgtttgtg tgggagaaat gcccgagccc
      481 gtgccgggta aggggcaggc tttggtgcgc acccatagct gtggcatgtg cgcgtccgag
      541 gcgcattttc tccatgccag gcagaatgtc atcgatttgt cgcgaaagca cggcggcgcc
      601 tatgccagcc tcgatatgag ccggccattt gttccggggc acgaatatgt tggcgaagtg
      661 ctggattatg ggccgggtag taagcgcacc gtgaagccgg ggcggaaagt gacctccgtg
      721 ccggtgatgc ggcagcaggg cgggcatgcg gtgatcgggt tttcgcatga ctgccccggc
      781 gggtttggag aattgatgct gctggatgag gacgtgctga tggaggtgcc gtccggcctc
      841 gatgacgatc tcgccgccat gaccgagcct ctggcggtgg ggctggaaca tgcccgccgc
      901 ggcctgccgg acaaggatga tgcggctttg gttgtggggt gtggcgccat cgggctgggg
      961 gtgattgcgg ggctgaagct gatgggcatc gcgcccatcg ctgcggcgga ttttcatgaa
     1021 tcgcggcgcg cgctggcgct gcgcatgggg gcggatatcg ccatcgaccc gcgcgggatg
     1081 tcgccctacg cgccgattcc ggatttgggc gggcggcagg tgaatcttgt ttatgaatgt
     1141 gtcgggctgc cggggctgat gcagcagatc atcacgagcg tcggattcgg ggcgcggatt
     1201 gtgatgggcg gatattgtat ggagcctgag caattctacg tgtttgccgc gcagaacaag
     1261 cgcctcaccg tgcatttcgc ggcgggtgag gagcagcagg atatggagct ggcgctgcgc
     1321 tccatcgccg atggcagcat cgatgtgaaa tcctggctgg gcgagcgcat cgggctgaat
     1381 ggtgtggcgg aggcgatggc gcagatgtcc gggccgctgg cgccggtgcg caccgtggtc
     1441 gatccgcgca gatggtgaaa atgagccggc tgggtattga gctgttgagc gtgttcggta
     1501 tgaatcctgt ggaacatgca gagctggcgg cggatcttgg ctgcgcttat atttcctccg
     1561 ggctgacgca attgccgttc aatccgcatg actatgagag ctggtcgctg cgcgatgatg
     1621 cggcgctgcg gcggcggttg atggatgtgc tgcgggaccg tggcgtgacg atttccttgg
     1681 gcgaggggtt taccattcgt ccaggagcag acatggcgga gcgcgcggcg gatatggata
     1741 tcatggcgga gttgggcgtg ctgtgcgcgg gggcgagcac gatggagccg gatgtggcgc
     1801 ggatgcgcga ccaatgcgcc atattggcgg aattggcggc ggaacgcggc atgaaggcga
     1861 gcatcgagct ggtgccgagc agctccgccg gcacgttggc ggaggcttcg gcggtggtgc
     1921 gccatgtcaa ccggccgaat tttggattgc tgctggattc catgcatgtt ttccgctctg
     1981 gtggcacgtt ggaggagctc cgggcgctcg atccggcggt gattttctac gcccagcttt
     2041 gcgatgtgcc actgccggcg cgcgagccgg attatatgcg cgaggcgatg ttcaaccggc
     2101 tggcgccggg gcagggcgag ttgccgttgg cggcattcgt ggcggcgctg ccgcagcacg
     2161 tgcccatcgg gctggaactg ccgatgctgg cgcaggcgga ggctggcatc ggcccgcgtg
     2221 agcgtctggc gccagcggtt gctgcggcca aggcgctgct ttaagtttgg cgccggggcg
     2281 gcaaatgccg
//
LOCUS       DASQCV010000270         2611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_391822, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000270 DASQCV010000000
VERSION     DASQCV010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391822"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..1158)
                     /gene="tilS"
                     /locus_tag="VEQ16_04060"
     CDS             complement(4..1158)
                     /gene="tilS"
                     /locus_tag="VEQ16_04060"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR02432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HYP63033.1"
                     /translation="MPVDGFDTALNRLGPFGARPRLAVAVSGGADSTALALLTQKFCK
                     ANGGEARAFIVDHGLREGSAEEAALTARRVGERGIAARIVTLSGLPRGAGLQEAARQA
                     RYEALAAACAEDGFLHLLLGHHRADQEETVAMRAARGPGGAEGIAAWSARNKILLLRP
                     LLGVRPEILRDYLRSEDMAWVEDPSNISPRFERVRLRQSGTNAAPAGAEERAARDEAV
                     AAYLAAHAQIRPEGFALLDAGSAPHAVLGALIRMIAGADYMPRQEPLARLGAKLRPAT
                     LGGVRLLSAGKLGSVWLLAREPAACAPPITAAPGVRWDGRFVLEAVPSPGMILGALGA
                     DAAKCRKFSPLPGIVLRGLPALRGMDGVLIFPAPVRFVPPVPATSHPFRV"
     gene            complement(1149..2105)
                     /locus_tag="VEQ16_04065"
     CDS             complement(1149..2105)
                     /locus_tag="VEQ16_04065"
                     /inference="COORDINATES: protein motif:HMM:NF027655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0070206 - protein trimerization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbgF trimerization domain-containing protein"
                     /protein_id="HYP63034.1"
                     /translation="MRKSLFAPVLFSSALFLLPAAEALLPAAAWAQPMVQSQEGIALQ
                     NEIDQLQSQVQQLQSASQNNGGSALGGNAAPPPAQSSGGGAPVAGGMVANLLNQVQQL
                     QSQVQQLSGQVDELQNQVNQQNAQTQKQIGDLNFRVTGSATPGGAPGTPPAGGAVPGQ
                     PQSLTPPSAAAPVPATPAPTPTPTTAPVSSGDPKSQLHAALTAYQAHDYKTSASLASS
                     LVKNSSQAPEAYRAQYLVAQSYSATGDNQDAAIAYDNTYNMNRTGAYAPQALLGLASS
                     LAGIGANDEACSTLSSLNSQFPTPPAGMQPRIDAVSKKANCQ"
     gene            complement(2257..>2611)
                     /gene="pal"
                     /locus_tag="VEQ16_04070"
     CDS             complement(2257..>2611)
                     /gene="pal"
                     /locus_tag="VEQ16_04070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HYP63035.1"
                     /translation="NVGDRVFFDFDKSGLSSDSTATLGKQAAWLAKYPSVNVLVAGNA
                     DERGTETYNLALGQRRADAARDYLVAQGVASTRVSTISYGKSCPVAAGHDESAWQQNR
                     NAITSVVGFNPQSCH"
BASE COUNT          464 a          887 c          846 g          414 t
ORIGIN      
        1 gggtcaaacc cggaatgggt gggatgttgc cgggacaggc ggcacgaaac gcaccggtgc
       61 aggaaaaatc agcacgccat ccatgccccg caacgccggc aagccacgta agacaatgcc
      121 cggcaagggg ctgaatttcc ggcattttgc cgcatccgcg ccgagcgcgc ccagaatcat
      181 ccccgggcta ggcacggcct ccagcacaaa gcgcccgtcc cagcgcacgc ctggcgcggc
      241 ggtgatgggc ggggcgcagg cagccggctc gcgagccaga agccagacac ttcccagttt
      301 tccggcagac agcagccgca ccccgcccag cgtggccggg cgcagttttg cccccagccg
      361 cgccaacggc tcctggcgcg gcatataatc cgcgcccgcg atcatgcgga tgagcgcgcc
      421 cagcaccgca tgcggtgcgg agccggcatc gagcagcgca aaaccttcag gccggatctg
      481 cgcatgggct gcaaggtacg cggccaccgc ctcgtcccgc gcggcacgct cctccgcacc
      541 agccggcgcg gcatttgtcc cgctctgacg cagccgcacc cgctcgaagc gcggcgagat
      601 gttagacggg tcctccaccc atgccatgtc ctcgctgcgc agataatcgc gcaaaatctc
      661 aggccgcacg ccgagcagcg gacgcaagag caaaattttg ttccgcgcgc tccaggctgc
      721 gatgccttct gctccgcccg gcccacgcgc ggcgcgcatc gccaccgtct cctcctggtc
      781 agcgcggtga tggcctagga gcagatgcaa aaacccgtct tccgcgcatg ccgccgccag
      841 cgcctcgtac cgcgcctgcc gcgccgcctc ctgcagccct gctccgcgcg gcagaccgga
      901 caaggtaacg atacgcgccg cgatgccgcg ctcccccacc cgccgcgccg ttagcgccgc
      961 ttcctcggcc gagccctcgc gcagcccatg atcgacaatg aaggcccgcg cctcaccgcc
     1021 atttgccttg cagaatttct gtgtcagcaa tgcgagcgca gtactgtccg ccccgcccga
     1081 aaccgccacc gccaagcgcg gccgcgcccc gaacggcccc aaccggttca gtgccgtatc
     1141 aaacccatct actggcaatt cgccttcttg ctcacggcat caatgcgcgg ctgcatccca
     1201 gcgggcggcg tgggaaactg gctgttgagc gagctgagcg tagagcaggc ctcgtcattg
     1261 gcaccgatgc cggcgagcga agaggccagc ccaagcaagg cctgcggcgc gtaagcgccg
     1321 gtgcggttca tgttataggt attatcgtag gcgatcgccg catcctggtt atcgccagtg
     1381 gcggaataag attgcgccac gagatattgc gcccggtagg cttccggcgc ctggctgcta
     1441 tttttcacca gcgaagacgc cagggacgcg gacgtcttgt agtcatgcgc ctgataggcc
     1501 gtgagtgcgg catgcagctg gcttttcggg tcgccggagg agacgggcgc cgtcgtgggc
     1561 gtgggtgtgg gtgccggagt cgccggcacc ggcgctgcgg cagatggcgg cgtgagcgat
     1621 tgcggctggc cggggacggc accgcccgca ggcggcgtgc ccggcgcacc gcccggcgtc
     1681 gccgaaccgg tgacacggaa attcaaatcg ccgatctgct tctgcgtctg cgcattctgc
     1741 tggttcacct gattctgcag ctcatccacc tggccgctga gttgctgtac ctgggactgg
     1801 agctgctgca cctgattaag cagattggcg accatcccgc cggccacggg cgcgccgcca
     1861 cccgaggatt gcgccggcgg cggggcagca ttgccgccca gcgcggagcc gccattattc
     1921 tgcgacgcgc tctgcaattg ttgcacctgg gactgcagct ggtcgatctc attctgcagc
     1981 gcgattccct cctggctctg gaccatcggc tgcgcccaag ccgccgcagg cagcaaagct
     2041 tcggcggcgg ggaggagaaa cagggcgctc gaaaacagaa ctggggcaaa caggctttta
     2101 cgcatggcga atcccggcat ggcttgaaac tgatcttgct ataatctagc gccgcttaaa
     2161 gacaaaacat ggcgggatta cgaagtcgaa aaacaaaacc ggcggcactt gcgtgccgcc
     2221 ggtttttaag taaccacccc gtaacggggg cagagcttag tggcagctct gcggattgaa
     2281 gccaaccacg gaggtgatgg cgttgcggtt ctgctgccaa gcggactcgt cgtgaccagc
     2341 agccaccggg caggacttgc cgtaggaaat ggtggagacg cgggtcgagg ccacgccctg
     2401 ggcaaccagg tagtcgcggg cggcgtcggc gcggcgctgg ccgagcgcca ggttgtaggt
     2461 ctcggtgcca cgctcgtcgg cgttacccgc caccagcacg ttcacggaag ggtacttcgc
     2521 cagccaggcg gcctgcttgc cgagcgtcgc ggtggagtcg ctggagaggc cggacttgtc
     2581 gaagtcgaag aacacgcggt cgccgacatt g
//
LOCUS       DASQCV010000271         1848 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_392163, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000271 DASQCV010000000
VERSION     DASQCV010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392163"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..242
                     /locus_tag="VEQ16_04075"
     CDS             <1..242
                     /locus_tag="VEQ16_04075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63036.1"
                     /translation="PPYSALADAATPQDLWSLALMNRDTPNRGELQQVLQHYDFVAIV
                     GGTPQDTPPNGCLRSFFKQPSFEILAVLHNPACGV"
     gene            complement(247..>1848)
                     /locus_tag="VEQ16_04080"
     CDS             complement(247..>1848)
                     /locus_tag="VEQ16_04080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63037.1"
                     /translation="PSGDAWLALGRMLAISLPLWLIMAPIRPSQPDTFLNLLPNSLYL
                     VDYGLLPTADRPPSFSLLPAAPYNTQFLSFLGSLLDADYPAGGMSLVNVLLQLMAAVA
                     IARALGQPEISPGRSPGWGLSALGLLLVTLLNPGFVPRIHFVAYGEPALAAMTVLAAW
                     LFILTQGELARGNRPAPLLPLALALAAIANTKQTGIALVVAIAGAALIAAWAERGVRL
                     SAALRHATLAVLPALFLFLVWRLHVARAGVGELTPLPLANWNWTNISYATESILRVVS
                     EKPLYFGCVAAAILALPLTWSRQGWTPTTRLLTFNVALFILHNVFILATYIAVFPPEM
                     SSAAHSYFRYNTQLSLVLVLSLALTVRDLGAVAWLSRKPSWIASAPVLALALLAPIAF
                     TKRLRFDLDMPQPLVWDLANKLKNNLNDGDRLALLLPGDNDSVATMIAGVLADAVPRR
                     HMLDLLRRNTADRSTLDEAARLGYPLALISCTPSGLGDLPAGQAVLLRHHPDGWRLAA
                     AWPYPPRAAERRWQHLLSWAPLCRQ"
BASE COUNT          415 a          547 c          600 g          286 t
ORIGIN      
        1 ggccgcccta ttcagcgctc gccgatgcgg caacgccgca ggatttgtgg tcacttgctc
       61 tgatgaaccg cgacacgcct aataggggag aactgcagca ggtgctccag cactatgatt
      121 ttgtcgccat tgtcggaggc acaccgcaag atacgccgcc aaacgggtgt ctccggtcct
      181 tcttcaagca gccgagtttc gagatactcg cggttcttca caatccagcc tgcggggtct
      241 gaagagctat tggcggcaga gcggggccca ggacaggaga tgctgccatc gccgctccgc
      301 ggcgcgcgga gggtaaggcc acgccgcggc gagacgccat ccgtccggat gatggcggag
      361 caggaccgcc tggccggcgg gcagatctcc caatccgctc ggggtgcacg agatcaatgc
      421 gaggggatag ccgaggcgcg ctgcttcatc aagagtcgag cgatcggcgg tattgcggcg
      481 tagcaggtcc aacatgtggc ggcgcggaac cgcgtcggcg agcaccccgg cgatcatcgt
      541 cgcgacgctg tcgttgtctc ccggcagtag caacgccagg cggtcgccat cgttcagatt
      601 gttcttgagc ttgtttgcga gatcccacac caaaggctgc ggcatatcga gatcgaaccg
      661 cagccgtttt gtaaaagcga tcggcgccag caaggctaat gccagcacgg gggcactggc
      721 gatccaggac ggcttccgcg atagccaggc cactgcgcca agatcgcgga cggtcagtgc
      781 cagagacaag accaacacca gtgaaagctg ggtattgtag cggaaatacg agtgcgccgc
      841 gctgctcatt tcgggcggga atacggcaat ataggtcgcc aaaataaaca cgttgtgaag
      901 gatgaatagg gccacattga acgtcagaag ccgggtggta ggcgtccaac cctgccgcga
      961 ccacgtcaat ggcaaggcca ggatcgcagc ggcgacgcag ccgaaataaa gtggtttttc
     1021 ggacacgaca cgcagaatgc tctcggtcgc gtaggagata ttggtccaat tccaattggc
     1081 aagaggcagc ggcgttagct cgccgacccc cgcccgagcg acatgaagcc gccaaactaa
     1141 aaataggaac agcgcgggca agaccgctag cgtcgcatgc cgcagcgctg ctgagagccg
     1201 gaccccacgt tcagcccagg cggcgatcag ggcggcgccg gcgatcgcga ccacgagggc
     1261 gatgccggtc tgcttcgtgt tggcgattgc cgccaaggcc agggcaagcg gcagcagcgg
     1321 cgccggccgg ttcccgcgag ccagctcacc ttgcgtcaat atgaacagcc atgctgcgag
     1381 gaccgtcatt gcggcgagcg ccggctctcc ataggcgaca aagtgaatcc gcggcacgaa
     1441 accaggattg agtagtgtca ccaacaaaag gcccagcgct gaaagccccc atcccggcga
     1501 tcttccgggc gaaatctccg gctggcctag tgcgcgggca atcgccaccg ccgccatgag
     1561 ctggagcagg acattgacca gtgacatgcc accggctggg taatcggcgt cgagtaaaga
     1621 gcccagaaag ctcaagaact gggtattgta gggagcagca ggcaacagcg aaaaactcgg
     1681 gggccggtcg gcggtcggca atagaccata gtcgaccaga taaagcgaat tgggcagaag
     1741 gttgagaaag gtgtccggct gtgacggccg gatcggcgcc atgatcagcc acagcggcag
     1801 agagattgcg agcatccgac ccagcgcaag ccaagcatcg ccgctcgg
//
LOCUS       DASQCV010000272         2616 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1884607, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000272 DASQCV010000000
VERSION     DASQCV010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2616
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1884607"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..328)
                     /locus_tag="VEQ16_04085"
     CDS             complement(<1..328)
                     /locus_tag="VEQ16_04085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007435661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2189 domain-containing protein"
                     /protein_id="HYP63038.1"
                     /translation="MAVSYQGNVTSQVQPSQNSAAEPTIREISLSDLHEALRKGWEDF
                     KAVPSHALFLCMIYPVLGLILARAVLGAAVLPLLFPLAAGFALIGPFAALPLYELSRR
                     REAGQEA"
     gene            496..1143
                     /locus_tag="VEQ16_04090"
     CDS             496..1143
                     /locus_tag="VEQ16_04090"
                     /inference="COORDINATES: protein motif:HMM:NF023621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3597 domain-containing protein"
                     /protein_id="HYP63039.1"
                     /translation="MKKGCRIANVTVSFCRYFVSAKLQSESWDDWHQKPARINSDGIR
                     LAGNDQGYLCVQAIGVHWEQTMSIFGKIMTAIFGSSASAASPAGGASKPAGGGGAAAA
                     PAGGGGGAAAAPTGGGGAAAAPAAKPAQTVDVAPILDKAVAAKKEKLEWRTSIVDLMK
                     ALDIDSGLGARKELAKELGYTGDTNDSASMNVWLHKQVMAKLAANGGRLPPEIKH"
     gene            complement(1152..1424)
                     /locus_tag="VEQ16_04095"
     CDS             complement(1152..1424)
                     /locus_tag="VEQ16_04095"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP63040.1"
                     /translation="MPSVRDNKASHRFELDVDGQIAFAKYQLTPQAIVITHTETPRSL
                     RGRGIASQLIKGALQMIRADGQKVIAGCGFVVDYLSKHPEDADLVA"
     gene            1638..1838
                     /locus_tag="VEQ16_04100"
     CDS             1638..1838
                     /locus_tag="VEQ16_04100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63041.1"
                     /translation="MKPVLTVLGVILLIVAAVYFLVPADQLPGFLPGHEAGVTRVHLK
                     HGVVSGVAGIVLIAAGIWLGRR"
     gene            1921..>2616
                     /locus_tag="VEQ16_04105"
     CDS             1921..>2616
                     /locus_tag="VEQ16_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYP63042.1"
                     /translation="MLTQNARRHGNRIGFVWGEKSWTWREIDAEVSALAAALAARGIV
                     KGDRILVHSKNCAEMFWSMFAAFRLGAVWVPTNFRLMPDEVAYLATASGAKVFLCDGD
                     FPDHAAAVSGPAFTWRIGEGGGFGERSVSAAIAAQIGTVVENAAVDYDDPCWFFFTSG
                     TTGRSKAAVLTHGQMTFVVTNHLADLTPGTTEQDASLVVAPLSHGAGVHQLMQAARGA
                     KTILLPTERFDITE"
BASE COUNT          470 a          801 c          836 g          509 t
ORIGIN      
        1 ttgcctcctg gcccgcctcg cgcctgcggc tgagttcgta gaggggaagt gcagcgaagg
       61 gaccgatcag ggcaaaacca gccgcaagcg gaaacagcag aggcagcacg gctgcgccaa
      121 gcacggcgcg cgctaggatc agtccgagca ccggatagat catgcaaagg aagagggcgt
      181 ggctcggcac tgccttgaag tcttcccagc ctttgcgcaa cgcctcgtgc aggtcggaaa
      241 ggctgatctc gcggatggtg ggttcggccg cactgttttg gcttggctgg acctgtgagg
      301 ttacgttgcc ctggtaggat acggccatgg tcgtgagctc ccttgcctgg tggccggaac
      361 cctcgccgtg tcgcggcgcg agcggccgcc tatgaatgat cgcaattctg gccggacacg
      421 agaaccgcac gggccgcgtc gcgaactgat aactgagcat actcccaaaa ctccgttttc
      481 gtccttcacc cctcggtgaa aaaaggatgc cgcattgcaa acgtaactgt gtcattctgc
      541 cgttatttcg tctcggctaa gcttcaatcg gaatcttggg atgattggca tcaaaagcct
      601 gcgcggataa attcggacgg catccgcctg gctggaaacg accaaggcta cctctgcgtt
      661 caggctattg gagttcattg ggagcaaacg atgagtattt ttggaaaaat catgactgca
      721 atctttggta gttcggccag tgctgcttcg cctgctggcg gtgcgtccaa acccgcaggc
      781 ggtggcggag cggccgccgc acccgcgggc ggtggcggtg gagcagctgc cgcgcccaca
      841 ggcggcggcg gagcagctgc cgcacccgca gccaagccgg cacaaacggt ggatgttgcg
      901 ccgatcctcg acaaggcggt cgccgccaag aaagaaaagc tcgagtggcg cacctcgatt
      961 gtcgatctga tgaaggcgct cgacatcgat tccggccttg gcgcgcgcaa ggaactcgcc
     1021 aaggagcttg gctataccgg cgataccaat gactccgcga gcatgaatgt ctggctgcac
     1081 aagcaggtga tggccaagct cgcagccaat ggcggcaggt tgccgccgga gatcaagcac
     1141 tagaaccgcc gtcaggccac caggtcggca tcttcggggt gcttgctcag gtagtcgacc
     1201 acgaagccgc atccggcgat gaccttctgg ccatcggcgc ggatcatctg cagtgccccc
     1261 ttgatcagct gcgaggcgat gccgcggccg cgcaggcttc gtggcgtctc cgtatgggta
     1321 atgacgatgg cctgcggcgt cagctgatac ttggcgaagg cgatctggcc atcgacatcg
     1381 agctcgaacc ggtggcttgc cttgttgtct cgcacggagg gcatgagctg gattccttgg
     1441 caaaattgct gccttcatgt aggcgcgcgc ccccgccaat gcaaaccgcc tcactatcac
     1501 agccgcgcgt gtccttgcag cgtggccaat ccagctaccc ttgcggagcg ttgcggtaag
     1561 gcgataaaca ggccgggaat gcgcgcgggc atcgtcggga tgctccaagc cttttgaaaa
     1621 acccgttgag gaagcccatg aagcctgtgc tgactgtgct cggcgtgatc ctgctcattg
     1681 tcgccgccgt ctattttctt gtcccggccg atcagctgcc gggcttcctc cccggccacg
     1741 aagccggcgt tacgcgagtc catctcaagc atggcgttgt atcgggcgtg gccggtatcg
     1801 tgctgattgc agccggtatc tggttggggc gacgctgagg tgagcgaaac cgccaccaac
     1861 ccggcggcgc cgcgtggcgg gcaaccgcgc atgtcgcgcc gggtcatgaa tctcgcgcat
     1921 atgctgaccc agaatgcccg ccggcatgga aatcgcattg gctttgtctg gggcgagaaa
     1981 tcctggacct ggcgcgagat cgacgccgag gtctccgcgc tggccgcggc cctcgccgcg
     2041 cgcggtattg tcaagggcga ccgcatcctc gtgcactcca agaattgcgc cgaaatgttt
     2101 tggtcgatgt ttgccgcctt ccgcctcggt gccgtctggg tgccgaccaa tttccgcttg
     2161 atgccggatg aggtcgccta tctcgctacc gcctcgggcg cgaaggtgtt tctgtgcgac
     2221 ggcgattttc cggatcacgc cgcggccgtg tcggggccgg ctttcacctg gcgcatcggc
     2281 gagggcggcg gatttggtga gaggtcggtc agcgcggcca tcgccgcgca gatcggcacg
     2341 gtcgtcgaaa atgccgcggt cgattacgac gatccctgct ggttcttctt cacttccggc
     2401 accacgggtc gttccaaggc ggcggtcttg acccacggcc agatgacctt tgtcgttacc
     2461 aatcatctcg ccgacctgac gccaggcacc accgaacagg atgcctcgct ggtggtggca
     2521 cccctgtcgc atggcgcagg cgtgcatcaa ttgatgcagg ccgcgcgcgg ggccaagacc
     2581 atcctgttgc cgaccgagcg tttcgacatc accgaa
//
LOCUS       DASQCV010000273         2835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3046174, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000273 DASQCV010000000
VERSION     DASQCV010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2835
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3046174"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..308)
                     /locus_tag="VEQ16_04110"
     CDS             complement(<1..308)
                     /locus_tag="VEQ16_04110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63043.1"
                     /translation="MTELFLTGESGSMMPVTFDGCFGWFHPASSGRAGAAVLLCPGAS
                     QDFSNGYRPFRLLAARLAEAGYATLRFDYPGTGDSAEPGSANLWAAWQESITKAASWL
                     "
     gene            complement(301..1437)
                     /locus_tag="VEQ16_04115"
     CDS             complement(301..1437)
                     /locus_tag="VEQ16_04115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63044.1"
                     /translation="MRQADETRSSGRELSFRSFAAQAGAAFLVTWGIVWIYIAAFPMA
                     YQSRDYPLMRAKEQLLAQCRPNAVVVFGDSKVVAGVLPSVMNIPVENLAFPAATPVET
                     YFFAKRLLRCPETPRLVVIAHSASQYPQDKFFWSILTSAGVLDTADIHAVEADANTLG
                     DDELERAERPNAVPLALLPELYAIRFPPLYFGNLLGGYVAARWRYNERAYQETILSGG
                     RSSFGTADRSDGVGDEAAMTDWQVSPLINLYMNRTLDLLAAHHVPVVIITLPMNDATC
                     AHLPPVIQPRFSAYLAGIAEAHPNVELADPTIPCWPDHYFGDDMHFNMSGALSYSHRL
                     QYILTALLRENDNEATAQPLDRETMLAWINASVRVPAEPETPDD"
     gene            complement(1472..>2835)
                     /locus_tag="VEQ16_04120"
     CDS             complement(1472..>2835)
                     /locus_tag="VEQ16_04120"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MBOAT family O-acyltransferase"
                     /protein_id="HYP63045.1"
                     /translation="LAFGIGVDLTVLVYYKYLGSLIGLATGLGLTGLHTPAILLPLGI
                     SFFTFTQIGYLVDVQQGVVQDRSPLNYMLFVSFFPHLIAGPILHNREIMPQFAQEQTY
                     RFSGENLAIGSVIFIIGLAKKCLFADPIAGLVTTGFADTAHLTMASAWMLMLTYAAQL
                     YFDFSGYTDMAIGIARMFNVRFPVNFNSPHKATCIIEFWQRWHMTLTRLLTLYLFNPM
                     VLAAVRRRTARGLPVDRKAQAKPAAFLRMTAMPLFITMALAGIWHGAGLQFLVFGLLH
                     GVSLTVNHAWRIIRPSLRAVKPGRLERFGNWTLTLAAILVALVFFRAPGMAAALQTVS
                     AMAGAHGSGIALQGLSSLAGPLGMIFAQHGAAAATTGLKSIEAFVQNGEVALLWFIIL
                     AMPNSQQIMNRYEPVLGRVTASRWPTLTWRPTPAWAMATGAVGAFAVMAIAGTTEFVY
                     FQF"
BASE COUNT          592 a          821 c          954 g          468 t
ORIGIN      
        1 ctgagccacg acgcggcctt ggtgatgctc tcctgccatg cggcccagag attggcgctg
       61 ccgggctcgg cggaatcgcc ggtgcccgga tagtcgaagc ggagcgttgc atagccggct
      121 tcggccaggc gggccgccag cagccggaaa ggccggtagc cattgctgaa atcctggctg
      181 gcgccagggc agagcaggac ggcggcaccg gcgcgcccgg aggatgcggg atggaaccag
      241 ccgaagcagc cgtcaaacgt gacgggcatc atgctgccgg actctccggt gaggaaaagc
      301 tcagtcatcc ggtgtctccg gttccgccgg cacgcgcacg gaggcattga tccaggccaa
      361 catcgtctcc cggtcgagcg gctgggcggt ggcctcgtta tcgttttcac gcaggagcgc
      421 cgtgaggatg tattgcagcc tgtggctgta ggagagggcg ccggacatgt tgaaatgcat
      481 gtcgtcaccg aaataatggt cgggccagca cgggattgtc gggtcggcca gctccacatt
      541 gggatgggcc tccgcgattc ccgccagata ggcggagaaa cgcggctgaa tcacaggcgg
      601 cagatgcgcg caggttgcgt cgttcatggg caaggtgatg atgaccaccg gcacatgatg
      661 cgcggcgagc aggtccagcg tgcggttcat gtaaagattg atgagcggcg agacctgcca
      721 atcggtcatc gcggcttcat cgccaacacc atcggacctg tcggcggtgc cgaacgagga
      781 gcggccgccg gagagaatgg tctcctgata ggcacgctca ttatagcgcc agcgtgccgc
      841 cacatagccg cccagcaaat tgccgaaata aagcggcgga aagcgtatgg cgtataattc
      901 gggcaagagc gcgaggggca cggcgttggg gcgctcggca cgttcaagct catcatcgcc
      961 gagcgtgttt gcatcggcct cgacggcgtg aatatcggct gtgtccagaa cacccgcgct
     1021 ggtcaagatg gaccagaaaa acttgtcctg cggatattgc gaggcggaat gcgcgataac
     1081 gacgaggcgc ggcgtttcag ggcagcgcaa caggcgtttg gcgaaaaaat aggtctcgac
     1141 cggggtggcg gctggaaaag cgagattctc taccggaata ttcatgacgc tcggcagcac
     1201 gccggcaacc accttgctgt cgccgaacac caccaccgcg ttgggccggc actgcgccag
     1261 cagctgctcc ttggcgcgca tgagcggata gtcccggctc tgataggcca tcgggaaggc
     1321 ggcgatatag atccagacga tgccccaggt gacaagaaac gcagcgcctg cctgtgccgc
     1381 gaagcttctg aatgaaagct cgcggccgga ggatctggtt tcatccgctt gtctcatggg
     1441 gttttccggc atggctccca tccttgcgtg attaaaactg aaaatagaca aactcggtcg
     1501 ttccggcgat ggccatcacc gcgaaggcgc cgacggcgcc tgtggccatc gcccaggcgg
     1561 gtgtgggccg ccaggtgagg gtcggccagc ggcttgccgt cacgcgcccg agcacaggtt
     1621 cgtaacggtt catgatctgc tggctgttcg gcatggccag gatgatgaac cagagaagcg
     1681 caacctcgcc attctgcacg aaggcttcga tgcttttcag cccagtggtc gcagcggcgg
     1741 cgccgtgctg cgcgaagatc atgccaagcg gcccggcgag gctggaaagc ccctgcagcg
     1801 cgatgccgct gccatgcgcg cccgccatgg cacttacggt ctgcagggcc gctgccatgc
     1861 ccggcgcgcg gaagaacacc agcgccacca ggatcgcggc aagcgtcagg gtccagttgc
     1921 cgaaacgctc aagccgcccc ggcttcacgg cccgcaatga aggccggatg atgcgccagg
     1981 catggttgac cgtgagagag acgccatgca gcaaaccgaa gaccaggaat tgcagccccg
     2041 ccccatgcca gattccggca agcgccatgg tgatgaaaag cggcatggcg gtcattctca
     2101 gaaacgccgc gggcttggcc tgcgccttgc ggtcaacggg caggccccgc gctgtgcggc
     2161 gccgcacggc ggcaagcacc atcgggttga acagatagag ggtcagcagg cgggtcagcg
     2221 tcatgtgcca gcgctgccag aattcgatga tgcaggtcgc cttgtggggc gagttgaaat
     2281 tgacgggaaa ccgcacattg aacatgcggg cgatgccgat cgccatgtcc gtatagccgg
     2341 agaaatcgaa ataaagctgc gccgcgtagg tcagcatcag catccaggcg ctggccatgg
     2401 tgagatgcgc tgtgtccgcg aagccggttg taaccaggcc cgcgatggga tcggcgaaca
     2461 ggcatttctt ggccaggccg atgatgaaga tcacgctgcc aatggccaga ttctcacccg
     2521 agaaacgata ggtctgctct tgcgcgaatt gcggcatgat ctcgcggtta tgcaaaatcg
     2581 gcccggcaat gaggtgcggg aaaaagctga cgaacagcat atagttgagc gggctgcggt
     2641 cttggacgac accttgctgc acatcgacga gatagccgat ctgcgtgaag gtgaagaagg
     2701 aaatgccaag cggcagcagg atcgcaggcg tgtgcaggcc cgtcaggcca aggcccgtgg
     2761 ccaagccgat gagggagccc agatatttgt aatagacgag aacggtgaga tccacgccga
     2821 tgccgaaggc gagcc
//
LOCUS       DASQCV010000274         2885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_392450, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000274 DASQCV010000000
VERSION     DASQCV010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2885
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_392450"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..192)
                     /locus_tag="VEQ16_04125"
     CDS             complement(<1..192)
                     /locus_tag="VEQ16_04125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63046.1"
                     /translation="MDKGWLCLLLLTILLLDALQFGAVVIHEGFYHQDFWGLWSAAHF
                     LLLLWALKYLGYWPGADTMD"
     gene            complement(209..874)
                     /locus_tag="VEQ16_04130"
     CDS             complement(209..874)
                     /locus_tag="VEQ16_04130"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010513631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanine(46)-N(7))-methyltransferase TrmB"
                     /protein_id="HYP63047.1"
                     /translation="MTIKPQPDRLYGRQKGKNLRPRQQWLLAEFLPRLSWPEVPFAIT
                     PRETWLEVGFGGGEHAFELAGKNPEVGYIAAEVFETGICSLLSKIAPDHVEHPEPPPN
                     LRLFTDDARPLLRSLADGELSKLFLMFPDPWPKARHAKRRFVHPEMIAEAARALRPGG
                     EWRIASDDPTYQEWTDEVLGAQNVFTVTRHTTRPEGWPPTRYEAKAIAAGRAPVYWSL
                     VRG"
     gene            complement(1045..2232)
                     /gene="metK"
                     /locus_tag="VEQ16_04135"
     CDS             complement(1045..2232)
                     /gene="metK"
                     /locus_tag="VEQ16_04135"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010513632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HYP63048.1"
                     /translation="MRDRGEFLFTSESVSEGHPDKVADRISDTVVDAYLAADPYARVA
                     CETLVTTNRIILAGEVRGPEIITPDYLSHLARLAVHDIGYDQEGFSWKNAEIAVHLHA
                     QSAHIAVGVDAAGNKDEGAGDQGIMFGYATTETEALMPAPIYYSHLILRRISELRRAA
                     NSQVKGLLPDAKSQVTLKYVDGKPVGATSVVVSIQHAPGMTPANVKELLRPIVKAALP
                     EGWMPPEDEFYVNPTGIFEIGGPDGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPTKV
                     DRSAAYVCRYLAKNVVAAGLSEKCTLQLSYAIGVSQPLSLYVDLHGTGKDVDEARLER
                     TLRELVNLTPRGIREHLQLNRPIYVPTSAFGHFGRTPDAELGTFTWEKTDLVPSLKSA
                     FGR"
     gene            complement(2375..>2885)
                     /gene="dapB"
                     /locus_tag="VEQ16_04140"
     CDS             complement(2375..>2885)
                     /gene="dapB"
                     /locus_tag="VEQ16_04140"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006116845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HYP63049.1"
                     /translation="TTGYGAAEQKAIDKAAKTIPIIAAPNFCTGVNLLLLLAEKLGHA
                     LDARQFDAEILEMHHRQKVDAPSGTALALGRAVAAGRGVKLEDVAVLSREGHAGPRQE
                     GEIGFATLRGGQIVGAHEVIFTAGDEQIALSHKAFDRRVFASGAVRAALWLHAQPAGL
                     YAMRDYLRL"
BASE COUNT          549 a          905 c          934 g          497 t
ORIGIN      
        1 gtccatagta tccgcgcccg gccaatagcc gagatatttc agcgcccaga gcagcagcag
       61 gaaatgcgcg gcagaccata ggccccagaa atcctgatga taaaacccct cgtgaatcac
      121 gacggcgcca aattgcaacg catcgagaag caggatcgta agcagaagaa ggcacagcca
      181 gcctttgtcc atgctcagct atccatgctc agccgcggac cagcgaccaa taaacgggcg
      241 cacgtccggc ggcgatggcc ttcgcctcat agcgcgtcgg cggccagcct tcggggcggg
      301 tggtatggcg cgtcacggtg aagacattct gcgccccgag cacttcgtcg gtccattcct
      361 ggtaggtggg atcatccgag gcaatgcgcc attcgccgcc ggggcggaga gcgcgggcgg
      421 cttctgcgat catttcggga tgcacgaagc gccgcttggc gtggcgggct ttcggccagg
      481 gatcggggaa catcaggaag agtttagaca attccccatc cgccagactg cgcaatagcg
      541 ggcgggcatc gtctgtgaag aggcgcaggt tgggcggcgg ttccggatgc tcgacatggt
      601 cgggcgcgat tttcgacagc agcgagcaga tgccggtctc gaacacttcc gcagcgatat
      661 agcccacctc cgggttcttc ccggccagct cgaaagcgtg ctcgccacca ccgaagccaa
      721 cttccagcca ggtctcgcgc ggggtgatgg cgaagggcac ttccggccag gacaggcgtg
      781 gcaaaaattc ggccagcagc cattgctggc gcgggcgcag attcttgcct ttctggcggc
      841 cataaaggcg gtcgggctgg ggcttaattg tcatgagaaa ttaccgggca ggatcgcaac
      901 tccataagag gcctcccatg gagtcacaac ctcaaaccca agttttaaaa gttttttgcg
      961 ccgctccgcg tcccgatggc gaagcggctc agccgcgtag cctgaatcgg gacgccaaac
     1021 caaggttcaa aaagcggcat actctcaccg cccgaacgcg ctcttgagcg acggcaccag
     1081 atccgtcttc tcccaggtga acgtccccag ctccgcatcc ggcgtgcggc cgaaatggcc
     1141 gaaggccgag gtcggcacat agatgggccg gttgagctgc agatgctcgc ggatgccacg
     1201 cggggtaagg ttcaccagct cgcgcagggt ccgctccagg cgggcctcat ccacatcctt
     1261 accggtgcca tggaggtcca catagagcga gagcggctgg ctgacgccga tagcgtagct
     1321 caactgcagc gtgcattttt cggagagccc ggcggccacc acattcttgg cgagatagcg
     1381 gcacacatag gcggcagagc ggtccacttt ggtggggtcc ttgcccgaga aagcgccgcc
     1441 gccatgcgga gccgcgccgc cataggtgtc gacgatgatc ttgcggccgg tcaggccgca
     1501 atcgccatcg gggccgccaa tttcgaaaat gccggtcggg ttcacgtaga actcgtcctc
     1561 cggcggcatc cagccctcgg gaagtgctgc cttcacgatc gggcgcagca gctccttcac
     1621 attggccggc gtcatgcccg gcgcgtgctg gatggagacc accacggagg tggcgccgac
     1681 cggtttgccg tccacatatt tcagcgtcac ctggctcttg gcgtccggca gcagcccctt
     1741 cacctgggaa ttggcggcgc ggcgcagctc ggaaatgcgg cgcaggatga ggtgggagta
     1801 atagatcggg gccggcatca gcgcctcggt ctcggtggtg gcgtagccga acatgatgcc
     1861 ctggtcgccc gcgccctcat ccttgttgcc ggcggcgtcc acgcccacgg cgatatgcgc
     1921 ggactgcgcg tgcagatgca cggcgatctc ggcattcttc caggagaagc cttcctggtc
     1981 gtagccaatg tcatgcaccg ccaggcgcgc cagatgggag agataatccg gggtgatgat
     2041 ctccggcccg cgcacctcgc cggccaggat gatgcggttt gtggtcacca gcgtttcgca
     2101 cgccacgcgg gcgtaaggat cggccgccag ataggcatcg acaacggtat cggaaatccg
     2161 gtccgccacc ttgtcgggat ggccctcaga gacggattcg gacgtgaaca gaaattctcc
     2221 gcgatcgcgc atggcaaact ccaaaaggtt ccgggggtcc ggatggcgta ttaggggctg
     2281 ggggtcaata ggcccaaata cagagccggg cacagtagac cgccactttt ttgcagaaaa
     2341 gtggcaccaa aaaacttttg ctccttttgc agtgctagag gcgcaaataa tctctcatgg
     2401 cgtagagccc tgcgggctgg gcatgcagcc acagcgcggc acgcacggcg ccggaggcga
     2461 agacgcggcg gtcgaacgcc ttatgggaca aggcgatctg ctcgtcgcca gccgtgaaaa
     2521 tcacctcatg agcgccgacg atctgcccgc cgcgcagcgt ggcgaagccg atctcgccct
     2581 cctggcgcgg gccggcatgg ccctcgcggc tcagcaccgc cacatcctcc agcttcaccc
     2641 cgcgcccggc cgccacggcg cggcctagcg ccagggcggt gccggagggg gcgtccacct
     2701 tctggcggtg gtgcatttcc agaatctcgg cgtcgaactg cctggcatcc agcgcatggc
     2761 ccagcttctc cgcgaggagg agcagcagat tcacgccggt gcagaaattc ggcgcggcga
     2821 tgatggggat ggtcttggcc gccttgtcga tggccttctg ctcggcggcg ccatagccgg
     2881 tggtg
//
LOCUS       DASQCV010000275         3081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_723991, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000275 DASQCV010000000
VERSION     DASQCV010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3081
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_723991"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(218..784)
                     /gene="efp"
                     /locus_tag="VEQ16_04145"
     CDS             complement(218..784)
                     /gene="efp"
                     /locus_tag="VEQ16_04145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HYP63050.1"
                     /translation="MKQQANLIRAGQVIEHEGARWTVLKQQIITPGKGGAFIQVEMRN
                     LKTGNKTNERWRTADTVERLTTEDRDYTYSYTDGDNLVLMDPETFEQFMVPTAILGDS
                     APFLQDNMPVVVALVEGDPVGITLPPHVTLEIVEADPVVKGQTASSSYKPAKLSNGVK
                     TLVPPFIEAGERVVVRTEDGSYVERAKG"
     gene            1050..>3081
                     /locus_tag="VEQ16_04150"
     CDS             1050..>3081
                     /locus_tag="VEQ16_04150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63051.1"
                     /translation="MLTHSPRAAHRHVLGSTCLLAFPAALALGTQAQAQTVINSSQTS
                     TLNISSYGASLVSIANGVSITSTGIAAVTSTAAAQLANAGSVADTSGAGIDLGAGGLL
                     TNSGSISGAEAVRLDAAGSVANSGGINGSRYGVLVNNGAGNVSNSGAIAAGYDGVSLK
                     KGGSVTNSGSIFGAHIGVYTGNGLGSVSNSGTISASSGDAVSLYSGGSLTNSATGALI
                     GGYSGVYAGGSGSHITNAGQISGPDFGVYLMGASSVSNSGTIAGGIDGVMGLSTGGQL
                     TNSGLIHGGQIGVKLAANGVVDNSGIVTGGTIGVKLGTNSTLANEASGRIAGGVTSVA
                     AAAGDVLQNAGTISGATGIAASGAISLTDTGVIGSTVTGGNAISLSGGASTIILGTGA
                     QINGNIAGNGTASQIELTGSGTLASNLTGFGAGSAVTVETGAVWTGSGQWQVAQLVNE
                     GVFTPGALGTPFSLAGNFVQSASGTLRVLVSPSGISPFAITGTATLGGTLRYVLAPGS
                     YAPSSDNFLTASGGITGNFAQVTSTSTGLQATPKQLTVNGAVSLVSADPVAASSVAVS
                     GGTLSIDNAFTVAPSGASLFADSSQAMAMSAFVSGMALLGRAGSNAPTGGWAQASGGL
                     ASATGAYSVRGGGILAGIDHADGIGGRIGFAVGYDSANMSDKSAGTAGLRTIR"
BASE COUNT          525 a          990 c          997 g          569 t
ORIGIN      
        1 taagaccagg ggctccgccc ctggacccgc cggggcctga ggccccagac ccccgctaat
       61 tttgggggat ttgggtggga gggggtaact cgccctcccg gtatccggca ttaaacgcaa
      121 atttgggtgg cgagttaccc cctcccaccc aaatccaaaa ctaatggggg ccggggcctc
      181 aggccccggc gggtccaggg cagagccctg gcctttctta acccttggcc cgttccacgt
      241 atgacccgtc ttccgtgcgc acgacgacgc gttcgccggc ttcgatgaag ggggggacga
      301 gggttttgac gccgttggag agtttggcgg gtttgtagga ggaggaggcg gtttggcctt
      361 tcaccaccgg gtcagcttcc acgatttcca gcgtgacgtg tgggggcagg gtgataccga
      421 cggggtcgcc ttcgacgagg gcgacgacga cgggcatgtt atcctgcagg aagggggcgg
      481 aatcgccgag gatggcggtt gggaccatga attgttcgaa ggtttcgggg tccatgagga
      541 cgaggttgtc gccgtctgta taggagtagg tatagtcccg gtcttcggtg gtcaggcgtt
      601 cgacggtatc ggcggtgcgc cagcgttcgt tggttttgtt gccggtcttc aggttgcgca
      661 tttcgacctg gataaaggcg ccgcctttgc cgggggtaat gatctgctgc ttcagcacgg
      721 tccagcgcgc accttcgtgc tcgatgacct ggccggcgcg gataaggtta gcctgctgct
      781 tcatggggta tgccctgctg attgaaaatc tgaatgatcg cgagaattga ctttgatgat
      841 tgactttgac gggggggctt acgctgccag ggcggtttgg gcaagccaca ttggggaatg
      901 gctcaaactc gagttaccgt acgggaaagt ttttcggaaa attttgccaa ggcgcttaac
      961 ggtaaattca catttaccga gctaaatggg ctcacccccc gtttgcccca ggcgccaaaa
     1021 actggcccgc cccaaggacc agttccccca tgctcacgca ctccccccgt gcggcgcacc
     1081 ggcacgtgct cggcagcacc tgcctgctcg ctttccccgc agccctcgct ttgggcaccc
     1141 aagcccaggc gcagaccgtc atcaacagca gccagacgag taccctgaac atctcctcct
     1201 acggcgccag cctggtctcc atcgccaatg gcgtcagcat caccagtacc ggcatcgctg
     1261 ccgtcacttc cacggcggca gcacagctgg ccaatgctgg ctcagtggcg gataccagcg
     1321 gtgccggtat cgatctcggt gccggtggat tgcttaccaa cagcggcagc atcagcggcg
     1381 cggaagcagt gcggctcgat gccgccgggt ccgttgccaa ttccggcggc atcaatggca
     1441 gccgctacgg tgtgctggtg aataatggcg ccgggaatgt cagcaatagc ggtgccatcg
     1501 cggcgggcta tgacggcgtg agcctcaaga agggaggcag cgtcacgaat agcggcagca
     1561 tcttcggcgc gcatattggc gtctataccg gcaacgggct gggtagcgtc agcaatagcg
     1621 gcaccatctc agccagcagc ggcgatgccg tctcgctcta tagcggcggc agcctcacca
     1681 acagcgccac gggcgcgctc atcggcggct atagcggtgt ctatgccggc ggctccggct
     1741 cgcacatcac caatgccggg cagatttccg ggccggattt tggtgtgtat ctcatgggcg
     1801 cctcgtccgt cagcaatagc ggcaccatcg ccggcggcat cgatggcgtc atgggtctga
     1861 gcactggcgg ccagctgacc aattccggcc tcatccatgg cggccagatc ggcgtgaagc
     1921 tcgccgccaa tggagtggtc gataattcag gcatcgtcac gggcggcacc atcggggtga
     1981 agctcgggac caatagcacg ctggcgaatg aggccagcgg gcgcatcgcc ggcggtgtca
     2041 catctgtggc tgccgccgcc ggcgatgtgc tccaaaatgc aggcaccatc agcggtgcga
     2101 cgggcattgc cgcctcgggt gccatcagcc tcaccgatac gggcgtgatc ggcagcaccg
     2161 tgacgggcgg caatgccatc agcctttcgg gcggcgccag caccatcatt ctgggcacgg
     2221 gcgcgcagat caacggcaac atcgccggca atggcacggc cagccagatc gagcttaccg
     2281 gcagcggcac gctcgcctcc aacctcaccg gctttggcgc gggcagcgcc gtaacggtgg
     2341 agaccggcgc ggtctggacc ggttccggcc agtggcaagt ggcgcagctc gtcaatgaag
     2401 gcgtcttcac ccccggcgcg ctgggcacgc ccttcagcct tgccgggaat tttgtgcaga
     2461 gcgcgagcgg cacgctgcgc gtcctggtct cgccttccgg catttcgccc ttcgccatta
     2521 ccggcacggc gacacttggc ggcacgctgc gctatgtcct cgcccccggc agctacgcgc
     2581 catccagcga caatttcctc accgcgagcg gcggcatcac cggtaatttt gcccaggtaa
     2641 ccagcaccag caccgggctg caggccacgc ccaagcagct taccgtcaat ggcgccgtaa
     2701 gcttagtcag tgccgacccc gtcgcggctt cgtccgtcgc cgtctccggc ggcactttgt
     2761 ccatcgacaa tgcctttacc gttgccccca gcggcgcgtc gctgtttgcc gatagcagcc
     2821 aggccatggc catgagcgcc ttcgtcagcg gcatggcgct actcggccgt gccggcagca
     2881 acgctcccac cggcggctgg gcccaggcct cgggcggctt ggcctccgcc accggggctt
     2941 actccgtgcg tggcggcggc atcctcgccg gcatcgacca tgcggacggg atcggcgggc
     3001 gcatcggctt cgccgtgggc tatgacagcg ccaatatgag cgacaaatcg gccggcacgg
     3061 ccgggctgcg caccatccgc c
//
LOCUS       DASQCV010000276         2964 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_724171, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000276 DASQCV010000000
VERSION     DASQCV010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2964
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724171"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..528)
                     /locus_tag="VEQ16_04155"
     CDS             complement(<1..528)
                     /locus_tag="VEQ16_04155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HYP63052.1"
                     /translation="MKLWHIDSSVLGDNSASRSLTAAIVARQKALHPGLQVEYLDLAA
                     HPVAHLSPAHIGALFGHPPADEAVLADIARGQGFIDSLFASDIIVIGAPMYNFGLPTQ
                     LKAWADRVLVAGKTFKYGPDGNSVGLVPAGKKVFIASTRGGLYGPGNPAAALEHQESH
                     LKAMLGFIGLTDITIV"
     gene            649..1557
                     /locus_tag="VEQ16_04160"
     CDS             649..1557
                     /locus_tag="VEQ16_04160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYP63053.1"
                     /translation="MLEAITLDQLRVFVAAAEERSFSAAGRRLNRAQSVISQSLANLE
                     GQLGLTLFKREGRYPVLTEAGESLLPDARAVLGGLSALKARARGMEAGVEPELAVAID
                     VMFPMSILTQAAAAFGAAFPQTPLRLYVEALGGVAQAVLDGQCSLGVVGSLPLNTRCL
                     ATERLLSEEMVLVAAPQHPLAALRTGITDCDLNQHVQLVLTDRTLLSKGQEFGVFSPR
                     TWRLADLGAKHAFLRAGLGWGGMPLEMVQRDLDEGALVELGLLDRPQRIHMVMSATYR
                     ADDPPGPAGRWFIEQLRQLAGDKRPA"
     gene            complement(1569..>2964)
                     /locus_tag="VEQ16_04165"
     CDS             complement(1569..>2964)
                     /locus_tag="VEQ16_04165"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HYP63054.1"
                     /translation="SAEQSRALFLWTRTLELLARGGATPALLAAGDKLNVSNIFSGKT
                     LIGRVDFSGIDSEYPYALVLPQARTEAILADELAKLGVTVERGTELTGFTSDANGVTA
                     TLTHPDGKAEAVRAAYLIGCDGGGSFVRQVLGITSATAPHRSSWYIADVELENSPFPR
                     TEFNSFWHEDGFMAVFPMPGGRFRIVANASRVGDFTPGTPPLEKIQAILDDRGPGGIT
                     AKNPAWLYAFYVQEQNLASYRKDRVFLAGDAAHVHNPVGAQGLNMGVHDACNLAWKLA
                     MVLRGIPNAETLLDSYTIERQAVAERVVANLGRAAQAATVRNPTLQFARNLLGNIYFG
                     LAPGRRQAAETLSEVSFSYDHSPINGIEDHALPGPHPGQRVAQKAGELPFGAGSEPRF
                     ALLGDSSPKVNKLRETFSQLLEAELRPPLSPRCVWLVRPDGYVAALAMREDVDQIAEY
                     LQGYVPSAEDLAAT"
BASE COUNT          542 a          969 c          955 g          498 t
ORIGIN      
        1 aacaatggtg atatccgtga ggccgataaa gcccagcatc gccttcagat gcgattcctg
       61 atgctcgagc gccgccgccg ggttgccggg accataaagc ccgccgcgcg tggaggcgat
      121 gaaaaccttc ttacccgccg gcaccagccc gacagagttg ccatccggcc cgtatttgaa
      181 cgtcttgccc gcgacgagca cgcggtcggc ccaggccttc aactgggtgg ggagaccgaa
      241 attatacatc ggcgcgccga tgacgatgat gtcggacgcg aacaagctgt cgatgaatcc
      301 ctgcccgcgg gcaatgtcag ccagcaccgc ctcatccgcc ggcggatggc cgaacaaagc
      361 accgatatgg gccggcgaaa gatgcgcaac cgggtgggcg gcgaggtcga gatactcaac
      421 ctgcagtccc ggatgcaggg ccttctggcg cgccacgatg gcggcagtga gcgaacggga
      481 ggcggaatta tcgccaagca cgctggaatc gatatgccaa agcttcatga tgcacactcc
      541 attgggcgcc ggacgcggcg cgatggcggt gatttaggcc tgggcaacca caccaggtag
      601 cctatatata aagatggata agatcggttt taacgatgga ttgccaccat gctcgaagcc
      661 atcacactgg accagttgcg cgtcttcgtc gccgccgcgg aggagcggag tttttccgcc
      721 gccgggcgac ggcttaaccg cgcgcaatcc gtcatctcgc aatcgctcgc caatctggaa
      781 gggcagctcg gcctcacctt gttcaagcgc gaggggcgct atcccgtgct cacggaagcg
      841 ggcgagagcc tgctgcccga cgccagggcg gtgctgggcg ggctgtcggc gctgaaggcc
      901 cgcgcccgcg gcatggaagc cggggtagag ccggaactcg ccgtggccat cgatgtgatg
      961 ttccccatgt ccatcctcac ccaagccgcc gccgcctttg gcgcagcatt cccgcaaacc
     1021 cccttgcgcc tctatgtgga ggcgctgggc ggcgtggcgc aggccgtgct ggacgggcaa
     1081 tgcagcctcg gcgtagtcgg ctccttgccc ctcaacacgc gctgcctcgc caccgagcgc
     1141 cttttgagcg aggaaatggt cttggtcgcc gccccgcagc acccgctcgc cgccctccgc
     1201 accggcatca ccgattgcga cctcaaccag catgtgcagc tcgtcctcac ggaccgcacc
     1261 ctcctctcca aaggccagga atttggcgtc ttctccccgc gcacctggcg cctggccgat
     1321 ctcggcgcca agcacgcctt cctgcgcgcc ggactcggct ggggcggcat gccgctggag
     1381 atggtgcagc gcgacctgga cgaaggcgcg ctggtggagc tgggcctgct ggataggcct
     1441 cagcgcatcc acatggtcat gtccgccacc tatcgcgccg acgacccacc cggcccggcg
     1501 gggcgctggt tcatcgagca attacgccag ctagcggggg ataagcggcc ggcttgattt
     1561 tttgcgcctc aggtcgcggc cagatcctca gcgctgggaa cgtaaccttg cagatattct
     1621 gcgatttgat cgacatcctc gcgcatcgcc agggcggcca catagccatc gggacgcacc
     1681 agccagacgc agcgcgggct caaaggaggg cgcaattctg cttccaggag ctgagagaag
     1741 gtctcgcgca acttgttcac ctttgggcta gagtccccca gcagggcaaa acgcggctcg
     1801 gacccggcgc cgaacggcag ctcgccggcc ttctgcgcca cacgttggcc aggatgcggg
     1861 ccgggcagcg catggtcctc gataccgttg atcgggctat ggtcatagct gaaggacact
     1921 tcagacaatg tttccgccgc ctgccgccgc cccggcgcca ggccgaaata gatattgcca
     1981 agcaggttgc gggcaaattg cagcgtcggg ttgcgcaccg tggcggcctg ggcggcgcgg
     2041 ccgagattgg ccaccacccg ttccgccacc gcctggcgct cgatcgtgta gctgtccagc
     2101 agcgtctcgg catttggtat gccgcgcagc accatggcca gcttccaggc gaggttgcag
     2161 gcatcatgga cgcccatatt cagcccctgc gcgccgaccg ggttatgtac atgcgcggca
     2221 tcgccggcca aaaagacacg gtccttgcgg taggaggcga gattctgctc ctgcacatag
     2281 aaggcataga gccaggctgg attcttggcg gtgatgccgc cagggccgcg gtcatcgagg
     2341 atggcctgga ttttctccaa aggcggcgtg ccgggggtaa aatcccccac cctgctggcg
     2401 ttggcaacaa tgcggaaccg cccgcccggc atggggaaga cggccatgaa cccatcctca
     2461 tgccagaagc tattgaactc ggtgcgtggg aacgggctgt tttccagctc gacatcggca
     2521 atgtaccagg aggagcggtg cggcgctgtg gcgctggtga tgcccagcac ctggcgcacg
     2581 aaactgcccc cgccatcgca gcctatgaga taggcagcgc gcacagcctc ggccttgccg
     2641 tccggatggg tgagcgtggc ggtgacgcca ttcgcatcgg aggtgaagcc cgtcagttcc
     2701 gtgccgcgct ccaccgtcac gccgagcttg gccagctcat cggccaggat tgcctcggtg
     2761 cgggcctgag gcagcaccag agcataggga tattcgctgt cgatgccgct gaaatcgacg
     2821 cggccgatca gcgtcttgcc ggaaaaaata ttggagacat taagcttgtc gcccgccgcg
     2881 agcagggccg gcgtggcgcc gccgcgcgcc agcagctcaa gcgtacgggt ccacaggaac
     2941 aaagcgcgcg actgctcggc ggat
//
LOCUS       DASQCV010000277         1870 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_225877, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000277 DASQCV010000000
VERSION     DASQCV010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_225877"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VEQ16_04170"
     CDS             <1..218
                     /locus_tag="VEQ16_04170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63055.1"
                     /translation="GVAQITETGAGAAGCTGWDCCTDTGDCGTWSAAGAGAGWALAVA
                     ATTRFESTIDQEMQDKDAQWPRASIRM"
     gene            541..1242
                     /locus_tag="VEQ16_04175"
     CDS             541..1242
                     /locus_tag="VEQ16_04175"
                     /inference="COORDINATES: protein motif:HMM:NF021438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HYP63056.1"
                     /translation="MTSTAAYAGNSISFEIEGQKIHIEAPKGCNTLSCLQITAPSIAN
                     KSFNLNSFNLDGLKSKNSDDDSDVATATPAQGVPQPAPAPQAVAPRPQPPTAVATVAP
                     PPPPPPPAPVAAPQSAPAASAAPLPPPAPAPAPAAAAPTTPVGVWATEENKGNVRIEQ
                     CGPSLCGYAVGSGEKVLINMKPSDNKWVGRIHDPDGGGNYDSTIAMKGPNILKVQGCA
                     FGGMFCGGQTWKRIS"
     gene            1376..>1870
                     /locus_tag="VEQ16_04180"
     CDS             1376..>1870
                     /locus_tag="VEQ16_04180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63057.1"
                     /translation="MAALAYGVLCYILFLLTFLYAVGFVGNLVVPKSIDIGGATASTT
                     KALIINIVLLGLFAIQHSVMARQGFKRWWTQFVPKYVERSTYVLLATLILILLFWQWR
                     PMTGVVWSVSNPTGAAILWAIFWLGWAIVLIGTFLINHFDLFGLQQVYEHWQGRVAEH
                     PSFKT"
BASE COUNT          359 a          596 c          569 g          346 t
ORIGIN      
        1 ctggtgtcgc gcaaatcacg gagaccggcg ccggcgcggc tggctgcacg ggctgggatt
       61 gctgcacgga taccggcgac tgcggcacct ggagcgccgc cggagcgggt gcgggctggg
      121 cgctggcagt ggcggcaacc actcgtttcg aatcgacaat cgaccaggag atgcaggaca
      181 aggacgcgca atggccgcgc gcctcgatcc ggatgtgatg tccgccaacc acgaacgaat
      241 ggacttcacc tgcgtgcgcg gacgaagaga gcatcatcag cgctgcgaaa tatccaaatc
      301 gcctcatcgg agcctccctc tccctgctgt tgaagggaag ctagagattg ttgggaactc
      361 cgactgtgac gggagtcacg ccctacgcaa accgccgcag agccggccac gccttgccac
      421 gtgacgccgg tcacagaagc gcatccaagg tcaagctaag aacctcgcag caatcaacac
      481 agagccgccg aggagcccac catgaagacg ttccatgtcg tcgccactgc tgcgctgctc
      541 atgaccagca cggccgcgta tgccggcaac tcgatttcct tcgagatcga gggacagaag
      601 attcacatcg aggcgcccaa gggctgcaac acactgtcat gccttcagat cacggcgccc
      661 agcatcgcca acaagagctt caacctcaac agtttcaatt tggacggcct gaagtcgaag
      721 aactccgacg acgatagcga tgtcgcaacc gccacgcccg ctcaaggtgt gccgcagccg
      781 gcaccggcgc cgcaagctgt cgccccccgg ccgcagccgc cgaccgccgt tgcaacggtt
      841 gcgcctccgc ctcctccgcc gccgcccgcg cctgttgcag cgccgcaatc agcgcccgcc
      901 gcctccgcag cacctcttcc gccgccggca cctgcgcctg cacccgccgc agcggcgccg
      961 accacgcccg tcggcgtgtg ggcgaccgag gagaacaagg gcaatgtgcg gatcgagcag
     1021 tgcggtccta gtctttgcgg ctatgccgtg ggtagcggcg agaaggtcct catcaacatg
     1081 aagccatcag acaataaatg ggtcggccgg attcacgatc cggacggggg cggcaattat
     1141 gactcgacga ttgccatgaa gggcccgaac attctcaagg ttcagggctg cgccttcggc
     1201 ggcatgttct gcggcgggca aacctggaag cgcatcagct gatcccagcg gtcttcccgg
     1261 gcggcgcggc gcattggcgg cgactgcgcc ttgccctaag atggcgacgt gcagtgcgtt
     1321 gatgcggcac tttttttctg ttcgggggtg ccgcccattg aaacaggagg ggctcatggc
     1381 cgcgctggct tacggagtgc tttgctatat tctgttcttg ctgacctttt tgtatgcggt
     1441 cggcttcgtc ggcaacctcg tcgtaccgaa gtcaatcgat atcggcggtg ccaccgcctc
     1501 gacaaccaaa gcactgatta tcaacatcgt gcttctcggc ttgttcgcca tccagcacag
     1561 cgtgatggcg cggcagggct tcaagcgctg gtggacccaa tttgtcccca aatatgtcga
     1621 gcgcagcacc tatgtgctgc tcgccaccct cattctgatt ttgttgtttt ggcaatggcg
     1681 tccaatgacg ggcgtggtct ggtcggtgag caacccgacg ggagcggcca ttctttgggc
     1741 gatcttctgg ctcgggtggg cgatcgtgct gatcggcacc ttcctgatca accatttcga
     1801 cctgttcggc cttcagcagg tttacgagca ttggcaggga agagtggcag agcatccgag
     1861 cttcaagaca
//
LOCUS       DASQCV010000278         4066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3046880, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000278 DASQCV010000000
VERSION     DASQCV010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4066
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3046880"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            842..>4066
                     /locus_tag="VEQ16_04185"
     CDS             842..>4066
                     /locus_tag="VEQ16_04185"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I polyketide synthase"
                     /protein_id="HYP63058.1"
                     /translation="MDISTNSMTPAIAIVGMACRYPDAQSPAELWENVLAQRRAFRRM
                     PTERLNAADYYSSDPEAPDQTYAMTAALIEDYEFDRLRYQVSGSAYRSADLAHWLALD
                     VAARALEDAGFPQARGLPRENTSVYLGNTLTGEFSRAAALRLRWPYVRRVVAASLAGE
                     GWDPARRAVLLRRMESEYKSPFAEVNEETLAGGLSNTIAGRIANHFDLKGGGYTVDGA
                     CASSLLAVATACSALAASDCDVALAGGVDLSLDPFELVGFAKAGALAREQMRVFDVRS
                     AGFWPGEGCGFVVLMRRDDALAMAGRVYGLIRGWGISSDGAGGLTRPELEGQLLALQR
                     AYRRAGFTPESVAYYEGHGTGTAVGDATELRALAHARSLSPAAAPAAVGSIKANIGHT
                     KAAAGIAGLLKVAMALDAQVIPPTTGCESPHPEMKTALRAVARAEIWPAELPLRAAVS
                     AMGFGGINSHIVLEGAGGARRACLSDREIQFARTPQDAELFLFSSAARVQQVAEFAAG
                     LSLAEMTDLAALLASQPAGSGCRAVAASTPEELARKLAELPVAEGRATPPRIGFLFPG
                     QGSQNSSAATEIAQPAIVRESLEALRELRELGIEACVAIGHSLGELVALCWAGALEET
                     AAVRIAEMRGRLMASVDGPLGAMAGIAAGEQETRVLIQSEPVVIACLNSARRTVISGE
                     AQALQRVVTQAQARGFHAALLPVSHAFHSPLVAPAAEPLAARLAEEVFAIPRRRVIST
                     VTGEALRKETDLRELLRLQVTAPVLFQRALRAAPEVDLWIEVGPGRALSQLAAETVAA
                     KVFPVESGTHLRRPFLEAVGAAFEMGAPVRGEALFAGRFFRSFRGHRKFFVNPCELAP
                     PLAEGGGTVGIAPPRPHTDERGTPPARSAIEVVRALVAERAELPLASLQNNARLLADL
                     HLNSIAVAQIAAEAARQLKLPPLAAPLEYAGLSIGELAGALMEMSPAAPGDDSVHPPG
                     VDAWVRNFHTHLVPRALVSSPARNTARLEAQPAGPGEWQFFGAVSEELREAPLPSGGG
                     VLLYLPACPDARWESAMLASARAAVQLRPPARFVVVHHGGGGAAL"
BASE COUNT          693 a         1227 c         1348 g          798 t
ORIGIN      
        1 cgaagagccc gaaactaacg gaggcgattc cgttcagcag gccggagaga ccaaacggag
       61 tcatgctaag cccttaggac atcgatcagt tcgcggtaaa tgtctccgct gaaccgaccc
      121 aatcctattt tagctcgtaa atccatgtgt tttggctttt tgtgaatata taagcggcgt
      181 aacgtgattg acccaacacc ctttgtgaca atcgaagctc gtggagcaac aatttccact
      241 cgtgttcagt aatagcggag aattctgacc gaacgatttc ctatgctttc cgggtcactg
      301 aatgcggcgc atcggtaaat ttgacaaaag catcttccgg gaagcgcttt tccaaatcgc
      361 cggcgagcgc ctctgatcga gaagattccc cggaaaagcc agggcaagac cgcggcttat
      421 tggacttccc ggcccttgga aagctctagc gcttccgtgg cgctcctctt tccttcggcg
      481 gcatttccgt aaacggcttc tcacaccgct cgcgccgccc ggtaacttgc tgccgtctcg
      541 cgttgccctt tttgcagggc caggtccatg gcccggttgg atgataggcg ggcggcctgt
      601 aaacggccgg cacgagccag agccaaagcc cccgcgtgag cgacgcggtg ttcggcgcca
      661 tgcttgccct tggccagagc cactacttga ttcgtctgtt ccttgtctcc tttcaaggcg
      721 gcgaggtggt atcggagtac tagaagatca ggcgcctcca gcttgagttc gaaagcacgc
      781 tgaagagcac tctcggcttc ggggaagcgg tttcagggtc gcattaggac tgactggtag
      841 aatggatatt tccaccaatt caatgacacc cgctatagcc attgtcggta tggcgtgccg
      901 ctatcccgat gcccagtcgc cggccgaatt atgggagaac gtgctcgcgc agaggcgcgc
      961 ctttcgccgc atgcctaccg aacgcctcaa cgcggccgac tactactcgt ccgatccgga
     1021 ggcgcctgac caaacttacg caatgacagc ggcgctgatt gaagactacg agttcgaccg
     1081 tttgcgctac caggtttcgg gaagcgccta ccggtcggcg gacctggccc attggctcgc
     1141 attggatgta gcggcccggg cgcttgagga cgccggcttt ccgcaagctc gcgggctgcc
     1201 gcgggaaaac acgtctgtgt atctgggcaa cacgctcacc ggggaatttt cacgagccgc
     1261 cgctttgcgg ctacggtggc cctacgtgcg gcgcgtcgta gcggcctctc tggcgggtga
     1321 agggtgggat ccggcgcggc gggccgtgtt actgcgccgc atggagagcg aatacaaaag
     1381 tccgtttgcg gaggtgaacg aggagacgct cgcgggcggc ctgtcgaaca ccatcgcggg
     1441 ccgcatcgcg aatcatttcg acttgaaagg gggcggttac acggtcgatg gggcttgcgc
     1501 ctcatcgctg cttgcggtcg ccactgcctg ttcggcgctg gcggcgagcg attgcgatgt
     1561 ggcgctggcc gggggcgtcg atctgagtct cgatcctttc gaactggtcg gttttgccaa
     1621 agccggcgct ctggcgcgag agcagatgcg cgtgttcgat gtccgctcgg cgggtttttg
     1681 gccgggggag ggctgcgggt tcgttgtgct gatgcggcgc gacgatgcgt tggccatggc
     1741 cgggcgcgtg tatgggctta tccggggctg gggcatctcg tcggatggcg ccggcggcct
     1801 cacgcggccg gagttggaag gccagcttct ggcgctacag cgcgcttatc gacgagcggg
     1861 cttcactccg gagtcagtag cgtattacga aggccacggc accggcacgg ctgtcggcga
     1921 tgccacagaa ctgcgcgccc tggcgcacgc gcggagcctt tcgcccgccg cggctccagc
     1981 cgccgtgggc agcatcaaag cgaacatcgg ccataccaag gcggccgcgg gaatcgccgg
     2041 gctgctaaaa gttgcgatgg cgcttgacgc tcaagtcata ccccccacaa ccggctgcga
     2101 atcgccgcat cccgaaatga aaacggcatt gcgcgcggtt gctcgcgcgg aaatctggcc
     2161 agccgagctg cctctccgcg cggcggtaag cgccatgggg ttcggaggca tcaacagcca
     2221 tatcgtgtta gagggcgctg gcggcgcgcg cagggcctgc ctatctgatc gcgagatcca
     2281 gtttgcaagg acgccgcaag atgcggagtt gttcttgttt tcctcagcgg cgcgggtgca
     2341 gcaagtggcc gaattcgccg caggtttgtc gctcgcggaa atgaccgatt tggcggcgct
     2401 cctggcatcc cagccggcag gttccgggtg ccgcgcggtg gcggcttcca cacccgaaga
     2461 actggcgcgc aaactggcgg aattgcctgt cgccgaaggc cgcgccaccc ctccccgaat
     2521 cggcttcctc ttcccgggcc agggatcgca gaactcttcg gcggctaccg aaatcgcgca
     2581 gccggccatc gtccgcgaat cgctcgaggc gctgcgggag ttgcgggagc tcggaattga
     2641 agcatgtgtg gccattggcc acagcctggg cgaattggtg gccctgtgct gggcgggcgc
     2701 gctggaggag acggccgccg tgcggattgc ggaaatgcgg ggccggttga tggcgtccgt
     2761 agatgggccc cttggagcca tggcaggaat cgccgctggc gagcaagaga ctcgggtgct
     2821 gatccaaagc gagccggtcg tgatcgcctg cctgaactcc gcgcggcgga cggtgatctc
     2881 aggtgaagct caggctctcc agcgcgtggt tacacaggcg caagcgcggg gtttccacgc
     2941 tgctttgctg ccggtttcgc atgcatttca ctcgcctttg gtggcgccgg cggcggagcc
     3001 gctggcggcg cgattggcgg aggaagtctt cgccatcccg cgacggcgcg tgatttcgac
     3061 ggtcaccgga gaagcattgc ggaaggagac cgatctgcgg gaactactgc gtcttcaagt
     3121 caccgctccc gtcctcttcc aacgtgcctt gcgagctgcg cccgaggtgg acctttggat
     3181 cgaagtcgga ccggggcgtg cgctctcgca actggcggcc gaaacagtcg cggcgaaagt
     3241 atttcctgta gagagcggaa cccatttgcg ccgaccgttt ctggaagcag tgggcgcggc
     3301 ttttgagatg ggagcgccgg tgcgcggcga ggctctgttc gccggcagat tcttccgctc
     3361 gttccgggga caccggaaat ttttcgtaaa cccgtgcgag ttggcgccgc ctttggctga
     3421 aggcggagga acagttggca tcgccccgcc acgcccgcat acggatgaga ggggtactcc
     3481 acctgctcga tcggccatcg aagttgtgcg cgcgttggta gccgagcggg cggaacttcc
     3541 gcttgcttct ctccagaaca atgcccggct attggccgac ctgcatctca attccatcgc
     3601 agtggctcaa attgccgctg aagcggcgcg tcaactgaaa ctgccgcccc tggcagcgcc
     3661 gctcgaatac gccgggctga gcatcggtga gttggccgga gcgttgatgg aaatgagccc
     3721 ggcggctcca ggagacgatt ccgtccatcc gccgggcgtg gacgcgtggg tcagaaattt
     3781 ccatacccat ctggttcccc gcgcgttggt ttcgagtccg gctcggaata ctgcccgact
     3841 ggaagcccag cccgcggggc caggagaatg gcaattcttc ggagccgtct cggaggagtt
     3901 gcgcgaggcg ccgctcccct cgggcggagg cgtgctgctg tacctgccgg cctgcccgga
     3961 cgcacgctgg gagtccgcga tgctggcatc ggcccgcgcg gctgtgcaac tccgacctcc
     4021 tgcgcgattc gtggttgtcc accacggtgg tggaggcgct gcgtta
//
LOCUS       DASQCV010000279         1956 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1721334, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000279 DASQCV010000000
VERSION     DASQCV010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1721334"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..479
                     /locus_tag="VEQ16_04190"
     CDS             <1..479
                     /locus_tag="VEQ16_04190"
                     /inference="COORDINATES: protein motif:HMM:NF019126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HYP63059.1"
                     /translation="MFGGNFAPAGWATCDGQLLSIAQNTALFSLIGTIYGGNGQTTFA
                     LPDLRGRLPVHTGGGLVIGQPGGSETVALTAANLPAHTHVANAASAGTTLSPAGQYWA
                     ADPGQNVAPYAAAPDGTVMSGAAIGTQGGNQPHDNMQPFLAVTFIIALQGIYPSRS"
     gene            502..1020
                     /locus_tag="VEQ16_04195"
     CDS             502..1020
                     /locus_tag="VEQ16_04195"
                     /inference="COORDINATES: protein motif:HMM:NF019126.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HYP63060.1"
                     /translation="MSEPFIGEIRAFGFNFPPRGWATCAGQLLPISQNTALFSILGTY
                     FGGNGTTNFALPNLQGNVPLHVGSGPGLSPRTIGETGGAPQVTLNVNQMPAHTHAANS
                     NSSAGTSYGPANNVWASDAGGAREYGAAPNVAMAGNAFAVTGGGQPHNNLQPYLAVNF
                     CIALQGVYPPRS"
     gene            1035..1538
                     /locus_tag="VEQ16_04200"
     CDS             1035..1538
                     /locus_tag="VEQ16_04200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019643478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HYP63061.1"
                     /translation="MATPFLGELKLVPFDFAPVGWAFCNGQLMAIAQNQALFALLGTQ
                     YGGDGRTTFALPNLQGAVALGAGPGYIQGEAGGAAAVSLTLAQMPAHSHGAMASNAAG
                     TQTAPTNGVWAQDSGGNAMFAAAANVTMSAAAISSQGSSAAHNNMQPYLVLHWIIALQ
                     GIFPSRN"
     gene            1549..>1956
                     /locus_tag="VEQ16_04205"
     CDS             1549..>1956
                     /locus_tag="VEQ16_04205"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP63062.1"
                     /translation="MDGTSLRKERPEDEAFLIALYTSTRETELAGVPWTDAQKAEFLR
                     SQFALQRSHYRTYYHDADFCIIEADGKPIGRLYVHRSAREIRLMDIALLPAWRGRGIG
                     GAYLQALLRKAQAANLPVTLHVEPGNPARRLYLR"
BASE COUNT          340 a          634 c          647 g          335 t
ORIGIN      
        1 ggatgttcgg cggcaacttc gcgccggccg gctgggcgac ctgtgacggt cagcttctct
       61 cgatcgcgca gaacacggcg ctgttttcgc tgatcggcac gatatatggc ggtaatggcc
      121 agacgacctt tgcgcttccc gatctgcgcg ggcgcctgcc ggtgcatacg ggcggcggcc
      181 tcgtcatcgg ccagcccggc ggcagcgaga ctgtggctct gaccgcggcc aaccttccgg
      241 cccacaccca cgtcgcaaac gccgcttcgg ccgggacgac gctttctccg gccggccaat
      301 attgggcggc cgatccgggg cagaatgtcg cgccctatgc ggcggcgccg gacggcacgg
      361 tcatgtcggg tgctgccatc ggcactcaag gcgggaacca gccgcacgac aacatgcagc
      421 ccttcctggc agtcacattc atcatcgcgc tccaaggaat ctatccgtca cggtcctgac
      481 acggcgcaac aggagctgtt catgagcgag ccatttatcg gcgagatccg cgccttcggg
      541 ttcaacttcc cgccaagggg ctgggccacc tgcgccggcc agttgctgcc gatttcccaa
      601 aacaccgcgt tgttttcgat cttgggcaca tatttcggtg gcaacggcac gacgaatttt
      661 gcgctgccaa acctgcaggg gaacgttccg ctgcatgtcg gatccggacc cgggctgagc
      721 ccgcgcacaa tcggcgaaac cggcggggcg ccgcaggtga cgctgaacgt gaaccaaatg
      781 cccgcgcaca ctcacgccgc caacagcaac agcagcgccg gcaccagcta cggtccggcg
      841 aacaacgtgt gggcctctga tgccggaggt gcccgcgaat atggcgccgc gccgaacgtc
      901 gcaatggcgg gcaacgcttt tgcggtgacg ggcgggggtc agccgcacaa caacctgcag
      961 ccttacctcg cggtgaattt ctgcatcgcg ttgcagggcg tctacccgcc gcgcagctga
     1021 cggaggctcg ggtcatggcc acgccatttc ttggggaatt aaagctcgtc ccgttcgact
     1081 ttgcaccggt gggttgggcc ttctgcaacg gccagctgat ggcgatcgcg cagaaccagg
     1141 cactgttcgc gctcttgggc acacaatatg gcggcgacgg tcggaccacc ttcgctctgc
     1201 ccaacctgca gggtgcggtg gcgctcgggg ccgggccggg ctatatccaa ggtgaagcgg
     1261 gcggggcggc cgcggtgtcg ctaacgctgg cgcagatgcc ggcgcactcg catggtgcta
     1321 tggcttcgaa tgcagcgggg acgcaaacgg ccccgacgaa cggggtgtgg gcgcaggatt
     1381 ccggcggcaa cgcgatgttt gcggcggcgg cgaacgtgac gatgtcagcc gcggcgatca
     1441 gcagccaggg ttcttcggcg gcgcacaaca atatgcaacc ctatctcgtc ctgcattgga
     1501 tcatcgccct gcaagggatc ttcccgagcc gcaattgagg cggcctcggt ggacggcacc
     1561 tcgctgcgca aggagcggcc ggaagacgaa gcattcctga tcgcgctcta cacctcgacg
     1621 cgagaaacgg aactggcggg ggtaccgtgg actgacgcgc aaaaagcaga gttcctgcgc
     1681 tcgcagtttg ccctgcagag atcgcattat cggacgtact atcacgatgc cgatttctgc
     1741 atcatcgaag ccgacgggaa gccgatcggc cggctctacg tgcatcgcag cgcgcgggag
     1801 atccggctga tggatatcgc cctgctgcct gcttggcgcg ggcgcgggat cggcggcgcg
     1861 tacctccagg cgctgctgcg gaaggcgcag gcggcgaatt tgccggtgac cttgcacgtc
     1921 gagccgggca acccggcccg ccgcctttat cttcgg
//
LOCUS       DASQCV010000280         1523 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2715449, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000280 DASQCV010000000
VERSION     DASQCV010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2715449"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..507)
                     /locus_tag="VEQ16_04210"
     CDS             complement(<1..507)
                     /locus_tag="VEQ16_04210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63063.1"
                     /translation="MRATPAARPPHMAILAIAVLPVVSHLVIMATRHVQLGLIFSFGG
                     LFKLGFVTISALTHWSIYVSLLAAFGLTLRQGREPLITALVRRMHGLTPERVSYTRKV
                     TIAWTLFFAAQLSLSIALFCFAPLVVWSFFVNILDLPLVVLMFAAEYVVRLRTLRDPP
                     RDSLSAIMG"
     gene            complement(508..789)
                     /locus_tag="VEQ16_04215"
     CDS             complement(508..789)
                     /locus_tag="VEQ16_04215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018981189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine-binding protein"
                     /protein_id="HYP63064.1"
                     /translation="MTAASITQTHEEAALAQLIVETLNLDQAATEIDPDAPLFGDEGL
                     GLDSIDMLEISLSVSQRYGVKLRADAEDNQEIFRSLRSLSAYIQAHGEA"
     gene            complement(957..1184)
                     /locus_tag="VEQ16_04220"
     CDS             complement(957..1184)
                     /locus_tag="VEQ16_04220"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYP63065.1"
                     /translation="MSRRAFTRLFRHETGMSFAPWRQQACLLAALPRLIAREPVTLVA
                     LDLGYDNPAAFTAMFKRALGLSPRNYLKQQN"
     gene            1228..1479
                     /locus_tag="VEQ16_04225"
     CDS             1228..1479
                     /locus_tag="VEQ16_04225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63066.1"
                     /translation="MHRAGGDPYATAGRDEPASGRGADQNGAGGAGEKLMAAVLVRQH
                     NMAVGEIIAERDERPRHVVVKFDPAIADHDSGSRFGPVT"
BASE COUNT          308 a          418 c          549 g          248 t
ORIGIN      
        1 gcccatgatg gcggataggg agtcacgcgg cgggtcgcgc aaggtccgca gccgcacaac
       61 atattccgcc gcgaacatca gtaccaccaa aggcaggtcg agaatattga cgaagaagga
      121 ccagaccacc agcggggcga agcagaacag ggcgatggag aggctgagct gggcggcgaa
      181 gaacagcgtc caggcgatgg tcaccttgcg cgtataggac acacgttccg gcgtgagtcc
      241 gtgcatgcgc cgcaccaagg cggtgatcag cggctcacgc ccctggcgca gcgtaaggcc
      301 gaaggcagcg agcaggctga catagatgct ccaatgggtg agcgcggaaa tggtgacgaa
      361 accgagcttg aacagcccgc cgaagctgaa aatcaggcca agctgcacat ggcgcgtcgc
      421 catgatgacg agatgtgaga ccacgggcag cacggcgatg gccagaatgg ccatatgcgg
      481 cgggcgggcg gcgggggtgg cccgcattta ggcctcgcca tgcgcctgga tataggcgga
      541 caggctgcgc agcgagcgga aaatctcctg gttgtcctcg gcatcggcgc gcagtttgac
      601 gccatagcgc tgcgacacgg agagggagat ttccagcata tcgatggaat cgagccccaa
      661 cccctcatcg ccgaaaagcg gcgcatcggg gtcgatctcg gtggctgcct ggtcgagatt
      721 gagcgtctcg acgatgagtt gcgccagcgc ggcttcctcg tgagtctggg tgatgctggc
      781 ggcggtcatg ggcgcacctt actgggccgg atggccggaa ccaagccaaa tcggctgcta
      841 gggcggggag atatggtcac tcttggtcct tattttcact gcgggtcatg tagcaggtcg
      901 ggttttcgtt gcaagcgaac gcaggttacg gcgggatgaa ggcgcggcaa accgattcag
      961 ttctgctgct tgagataatt gcgcggcgaa aggccgaggg cgcgcttgaa catggcggtg
     1021 aaggcggccg ggttgtcata gccgagatct agcgccacga gcgttaccgg ctcacgggcg
     1081 atgaggcggg ggagtgcggc gagcaggcag gcctgctggc gccagggggc aaaactcatg
     1141 ccggtttcgt ggcggaacag gcgggtgaag gcgcggcggc tcaagataga ggctgcacag
     1201 gctgacggcg ccgagcagcc gcacctcatg caccgtgccg gcggggatcc atacgccacg
     1261 gccgggcggg atgagccagc ttccggccga ggtgctgacc agaatggcgc cggtggcgcc
     1321 ggagagaagc tgatggcggc ggtgcttgtg cgccagcaca atatggccgt cggggaaatc
     1381 attgccgagc gcgatgagcg gccgcggcac gtcgtcgtga aattcgaccc ggctattgcg
     1441 gaccatgatt caggctcccg ttttggccca gtcacgtaaa tttttggcct aactgcggtg
     1501 gcaggccgta tctgtgcttc cta
//
LOCUS       DASQCV010000281         1920 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1555653, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000281 DASQCV010000000
VERSION     DASQCV010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1555653"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..450
                     /locus_tag="VEQ16_04230"
     CDS             97..450
                     /locus_tag="VEQ16_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007002999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HYP63067.1"
                     /translation="MIRALAILLLCQLVGTVLQEALGLPVPGPVIGFVLLAAIFLYTK
                     GPGAELHDTAQGLLKHMGLLFVPAGVGVVGTLGVLKQNALALVIAIPVSTVLGLLVTG
                     VIMQWFMRRQDQADA"
     gene            443..1171
                     /locus_tag="VEQ16_04235"
     CDS             443..1171
                     /locus_tag="VEQ16_04235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HYP63068.1"
                     /translation="MHNLRPLFHIWVYLQTQPLLWLTVTLCVWEFSRALDRKARHHAL
                     SNPTVMSIFIIAALLLLTRTSYRAYFSGGEYIQFLLGPATVALAVPMYANWPVIKRNF
                     LAIIVSLTAGSMVAAGSAMLIMHALHAPRMITISLGPKSVTTPIAMGIAQNLGGDPSL
                     TAVLVMITAIFGILVYPFVFSFGRVTDWRARGLAAGVAMHGLGTARMLILDETGGAFA
                     GLAIGLNGVVTSIFLPVMITIFGI"
     gene            complement(1173..>1920)
                     /locus_tag="VEQ16_04240"
     CDS             complement(1173..>1920)
                     /locus_tag="VEQ16_04240"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MraY family glycosyltransferase"
                     /protein_id="HYP63069.1"
                     /translation="FVIKLATQLFAALVAVASGLVVQSLALPHFGVVDLGWTSLPLTV
                     FFLLYVTNAMNFIDGLNGLASGVTFVACLFLGGIAGLHGGFFVYTASLLLAGGVLGFL
                     PYNYPKGQIFMGDVGSQFCGFMLALFGVAATRFDGVPLSFLLVPFLLSGVLYDVTFTL
                     IRRTLARENIARAHNGHLYQVVRRAGMDARWVAAIHWGFALIGGCTAIAFLHTVQWER
                     IAIGLTPLAVQLAWTDYVVRRARAAGIEKW"
BASE COUNT          341 a          609 c          617 g          353 t
ORIGIN      
        1 aggactgcca gctcggcatt tggtcggcct gcaacaatgg ggtagggctt gaaatatggc
       61 ctgatttccg cggccgcaag tgtggaggag cggcgaatga tccgcgcatt ggcgatttta
      121 ctgctgtgtc agctggtggg cacggtgctg caggaggcgc tcggcctgcc cgtgccgggg
      181 ccggtgatcg gtttcgtgct gctggcggca attttcctct acaccaaggg cccaggcgcg
      241 gagctgcatg ataccgcgca ggggctgctc aagcatatgg gcctgctttt cgtcccggcc
      301 ggcgtggggg ttgtcggcac gctgggtgtg ttgaagcaga atgcgctggc cctcgtcatc
      361 gccattccag tctccaccgt gctgggcctg ctggtcacgg gtgtcatcat gcaatggttc
      421 atgcgccggc aggaccaggc cgatgcataa tctccggcct ttgttccata tctgggtcta
      481 tctgcagacc cagcctttgc tctggctcac ggtcaccctg tgcgtctggg agttttcccg
      541 cgcgctggac cggaaagcgc ggcatcatgc gttgagcaat cccacggtga tgtccatttt
      601 catcatcgcg gccctgcttc tgctcacccg gaccagctac cgggcctatt tctcaggggg
      661 cgaatatatc cagttcctgc tcggtccggc gacggtggcg ctggccgtgc cgatgtatgc
      721 caactggccc gtcatcaagc gcaatttcct cgccatcatc gtctcgctca cagcgggctc
      781 catggtggcg gcgggctcgg cgatgctcat catgcacgca ctgcacgcgc cgcgcatgat
      841 caccatctca ctcgggccca aatcggtcac cacacccatc gccatgggca tcgcgcagaa
      901 tctggggggc gatccctcgc tcaccgccgt gttggtcatg atcacggcga tattcggcat
      961 cctggtctat ccgttcgtct tctcgttcgg ccgcgtcacg gactggcggg cgcggggtct
     1021 ggcggcgggt gtggccatgc acgggcttgg cacggcgaga atgctcatac tggacgagac
     1081 gggtggcgct ttcgcgggcc tcgccatcgg gctcaacggc gtcgtcacct cgattttcct
     1141 gccggtgatg atcaccattt tcggaattta actcaccatt tctcaatacc ggcggcccgc
     1201 gcgcggcgga caacataatc cgtccaagcc agctgcacgg cgagcggggt caggccgatg
     1261 gcgatccgct cccattgcac cgtatgcagg aaggcgatgg cggtgcagcc gccgatcaac
     1321 gcgaagcccc aatggatggc cgccacccat ctcgcatcca tcccggcccg gcgcaccacc
     1381 tggtagagat gcccgttatg ggcgcgggcg atattttccc gtgccagggt gcggcggatg
     1441 agggtgaagg tgacgtcgta cagcacgccc gagagcagga agggcacgag caggaaggag
     1501 agcggcacgc cgtcgaaccg tgtcgcggcc acgccgaaca gcgccagcat gaagccgcag
     1561 aactggctgc cgacatcgcc catgaagatc tggcccttgg ggtagttata gggcaggaac
     1621 cccagcaccc cgccggccag cagcagcgag gccgtataga cgaaaaaccc gccatgcagc
     1681 ccggcgatcc cgcccaggaa caggcaggcg acgaaggtga cgcccgaggc gaggccgttc
     1741 agcccgtcga tgaaattcat cgcgttggtg acgtagagca ggaaaaacac ggtcagcggc
     1801 aggctggtcc agccgagatc caccacgccg aaatgcggca gcgccaggct ctgcaccacc
     1861 agccctgagg ccacggccac cagggcggcg aaaagctgcg tcgccagctt gatgacgaag
//
LOCUS       DASQCV010000282         3384 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2052397, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000282 DASQCV010000000
VERSION     DASQCV010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3384
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2052397"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..610
                     /gene="cofC"
                     /locus_tag="VEQ16_04245"
     CDS             <1..610
                     /gene="cofC"
                     /locus_tag="VEQ16_04245"
                     /EC_number="2.7.7.68"
                     /inference="COORDINATES: protein motif:HMM:TIGR03552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043814 - phospholactate
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2-phospho-L-lactate guanylyltransferase"
                     /protein_id="HYP63070.1"
                     /translation="LYRVVAPLMSVWAVLPVKPAEEGKSRLAEVLPLPMRIRLNRALF
                     RHTLDIVCSVFTPAHVIVVSRDPALLCIAAAAGAQALTEYGEGLNAALTQAALLPPPG
                     ADLLAISTDLPTLTAADLRAMLEQPGPVIIAPDRAGQGTNALLLRPAGSIPYRFGDNS
                     FHLHCLAASQSGLEIHAIHRPGLAFDLDMPDDLSLCPIGFLG"
     gene            835..1881
                     /locus_tag="VEQ16_04250"
     CDS             835..1881
                     /locus_tag="VEQ16_04250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HYP63071.1"
                     /translation="MKLRLALAAATCLALPLAAHAQPVTGPYVSLGAGTSLASPEHFQ
                     GYSSGRTGKLQLRAAYALDGAVGYGFGNGFRVELNGNFYRNTVAKMKYDATGDAFFGG
                     GVNTYGPMVNGLFDMDVGLPVFPYLGVGVGYQWQRYVDPAYGHRDSISGTEGSFAYNI
                     IAGVSYPLPVPGLSLTGEYKFMQLVESRNYNNNVAGGKSHMGQSTSNTFLIGLRYQIF
                     NPPPPPPAPAPAPVAAPAPAPAKTYLVFFDWDKYNLTPRATEIIAQAASDSKTQNTTT
                     IDVSGYTDTTGTPQYNLGLSERRAKAVATQLVADGVPESAISIHAFGDTHLLVPTGPG
                     VREPQNRRVEIVLQ"
     gene            complement(1949..2536)
                     /locus_tag="VEQ16_04255"
     CDS             complement(1949..2536)
                     /locus_tag="VEQ16_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014249054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HYP63072.1"
                     /translation="MAGAGISKLDELAAAARGCTLCAAVLPLGPRPVFRVSETARLLV
                     ISQAPGTKVHASGMPFDDASGDRLRAWMGIGRDKFYDASKIAFMPMGFCYPGRLPNGG
                     DAPPRSECAPEWHDQFLALLPQVELILLVGSYAQRRYLGKGSMTAHVQAGARAGGRFL
                     PLPHPSWRTAGWEAKNPWFGEQILPRLKAEVARLT"
     gene            complement(2518..3177)
                     /locus_tag="VEQ16_04260"
     CDS             complement(2518..3177)
                     /locus_tag="VEQ16_04260"
                     /inference="COORDINATES: protein motif:HMM:NF014247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HYP63073.1"
                     /translation="MMRRIFAPALALTLLATGAARAEDTLSPLHFQSQGPLGTIDKAA
                     AQRGYVVYKTVCAACHSANQVHYRDLEALGLTPDQAAGEAAAAGGTLDSPLKGAAPMD
                     MGGAIPPDLSSIVAQRPGPRYIFDFLTGFGPAPNGVTLLPGHNYNAAFPGGQTAMPPA
                     LHDPASAAQQAADVAEFLVWTSDPNRDARHLIGFRAVIFFAFLAIIAIASKRKVWRAQ
                     A"
     gene            complement(3174..>3384)
                     /locus_tag="VEQ16_04265"
     CDS             complement(3174..>3384)
                     /locus_tag="VEQ16_04265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HYP63074.1"
                     /translation="PWLDRSGPTGAKGRLYAVLTWVLALDVLGLGLAASPGCPEASTL
                     AGLFTFWYFFHFLVLTPVVTAMEAK"
BASE COUNT          614 a         1097 c         1060 g          613 t
ORIGIN      
        1 cctatatcga gtcgttgcgc cgcttatgag cgtctgggcc gtgctcccgg tcaaaccggc
       61 cgaggaagga aaatcgcgcc tcgccgaagt cctgccttta cccatgcgca tccgtctcaa
      121 tcgtgctttg ttccgccata cgctggacat tgtctgcagc gttttcacgc cggcgcatgt
      181 catcgtggtg agccgtgatc ccgcgctgct ctgcatcgct gcggcggccg gtgcgcaggc
      241 tcttaccgag tatggcgagg gactcaacgc ggcgctcacc caggccgctc tgctgccgcc
      301 acccggcgcc gatctgctcg ccatcagcac tgatcttcct accctcacgg cggcggatct
      361 gcgcgccatg ctggaacaac ccggccccgt catcatcgcg cccgaccgtg cggggcaggg
      421 aacaaatgca cttcttttgc gccccgccgg ttcaattccc tatagatttg gtgataatag
      481 cttccatctt cattgcctgg cggcatcgca gtctggactg gagattcacg ccattcatcg
      541 cccaggcttg gccttcgacc ttgacatgcc cgatgacctt tctctttgtc caatcggctt
      601 tctgggataa actccccctc ttgctctctg ccgaagctcc cgttaattta tgtttggaac
      661 cgcatcaaaa ccagccggct attgcaacgg gtgtccgtac ggctggttta cggtggtcca
      721 ccgtccggcg actgtcgcca aaaagccacg gccggggcaa aagcttggac ggaaggttgt
      781 ttcacacaaa cccattactc tattatcgca ggcaacacac gaaggagaga cgagatgaag
      841 ctgcgcctgg cactcgctgc cgccacttgc cttgctttgc cgctggcggc tcatgcccag
      901 ccggtgaccg ggccctatgt cagtctgggg gcgggcacca gcctcgccag cccggagcat
      961 tttcagggct atagctcagg ccgtaccggg aagctccaat tgcgcgccgc ctatgcgctg
     1021 gatggcgccg ttggttatgg ttttggcaat ggtttccgcg ttgagctgaa cggtaatttc
     1081 taccgcaaca ctgtcgccaa gatgaaatat gacgcgaccg gcgatgcgtt cttcggtggc
     1141 ggcgtgaaca cctatggccc gatggtcaat gggttgttcg atatggatgt cggcctgccc
     1201 gtcttcccct atctgggcgt tggcgtcggc tatcaatggc agagatacgt cgacccggcc
     1261 tatggccaca gagacagcat ttccggcacc gagggcagct ttgcctataa catcatcgcc
     1321 ggtgtgtctt acccgctgcc tgtccccggc ctgtctttga ccggcgaata taaatttatg
     1381 cagttggtcg agagccgcaa ttacaacaac aatgttgcag gcggcaagtc gcatatgggg
     1441 cagtccacca gcaacacctt cctgattggt ctgcgctatc agatcttcaa cccgccgccc
     1501 ccgccgccgg ctccggcgcc ggcccctgtc gcggccccgg ccccggctcc ggccaagacc
     1561 tacctggtgt tcttcgactg ggataagtac aacctcaccc cgcgcgcgac cgagatcatc
     1621 gctcaggccg cgtccgacag caaaacccag aacaccacca ccatcgacgt gtccggctac
     1681 accgacacga ccggtacgcc gcagtacaat ctgggcctgt ccgagcgccg cgcgaaggcg
     1741 gttgccaccc agctggtggc cgatggcgtg ccggaatcgg cgatctcgat ccatgccttc
     1801 ggcgacacgc atctgctggt gcccaccggc cccggcgtgc gcgagccgca gaaccgccgc
     1861 gtcgaaatcg tcctgcagta agcaagggct tttccaagaa accccggcag gagactgccg
     1921 gggttttttg cgttttaagg ggtcggcttc aagtcaggcg ggcgacttcc gccttgaggc
     1981 gcggtaaaat ttgttcgccg aaccatggat ttttcgcctc ccaccccgcg gtgcgccagg
     2041 acgggtgtgg caatggcagg aagcggcccc ctgccctggc gccagcttgc acatgcgccg
     2101 tcatgctgcc cttgcccaga tagcgccgct gcgcatagga gccgaccagc aggatcaact
     2161 cgacctgcgg cagcaaagcg aggaattggt catgccattc aggcgcgcat tccgagcgcg
     2221 gcggcgcatc gccgccgttg ggcaggcggc caggatagca gaaccccatc ggcatgaagg
     2281 cgatcttgct ggcatcgtag aatttgtcgc gcccgatacc catccaggcg cgcagacggt
     2341 cgcctgaggc gtcgtcgaac ggcatgccgg aggcgtgaac ctttgtgccc ggcgcctggc
     2401 tgatgacgag cagccgcgcc gtttccgaga cgcggaagac tggccgcggc cccaaaggca
     2461 aaacggcggc gcagagcgtg cagccccgcg ccgccgccgc caattcgtcg agtttgctta
     2521 tgcctgcgcc cgccacacct tccgcttaga ggcgatggcg atgatcgcca agaaggcaaa
     2581 gaagatcacg gcgcggaagc cgatcaggtg cctggcgtcg cgattgggat ccgacgtcca
     2641 gacgaggaat tccgcgacat cggccgcctg ctgcgccgcg ctcgcgggat catgcaaggc
     2701 gggcggcatc gccgtctgcc cgccggggaa ggcggcattg tagttatggc ctggcagcaa
     2761 ggtaacgcca ttcggcgcgg ggccgaagcc ggtaaggaag tcgaatatgt agcgcgggcc
     2821 tgggcgctgc gcgacgatgg aagagagatc cggcgggatg gcgccgccca tatccatcgg
     2881 cgccgcgcct ttcagcgggg aatcgagcgt gccgcccgcc gcggcagcct cgccagcggc
     2941 ctgatcgggc gtcaggccca gggcctcgag gtcgcggtaa tgcacctggt tcgcggaatg
     3001 gcaggcggcg cagacggtct tgtagaccac atagccacgc tgggcggcgg ccttgtcgat
     3061 ggtgccgagc gggccctggc tctggaaatg cagcggcgag agcgtgtcct cggcacgggc
     3121 agcacccgtg gccagcaggg tgagcgcgag ggcgggggca aaaatccggc gcatcatttc
     3181 gcctccatcg ccgtcaccac tggggtgagg accagaaaat ggaaaaaata ccagaaggtg
     3241 aacaggcccg cgagggtgga ggcctcgggg cagccggggc tggcggccaa gccgaggccc
     3301 agcacgtcga gcgccaaaac ccaggtgagc acggcataaa gccggccctt ggcgccggtg
     3361 gggccggaac ggtccagcca gggc
//
LOCUS       DASQCV010000283         1902 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2385005, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000283 DASQCV010000000
VERSION     DASQCV010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1902
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2385005"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..224
                     /locus_tag="VEQ16_04270"
     CDS             <1..224
                     /locus_tag="VEQ16_04270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HYP63075.1"
                     /translation="ALAGRHEQARALFERILAVRNHVGLLSEDLIPEANGAPHRLWGN
                     FPQTYSQVGLILCAMRLSRSWEDGLWRAS"
     gene            209..1570
                     /locus_tag="VEQ16_04275"
     CDS             209..1570
                     /locus_tag="VEQ16_04275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HYP63076.1"
                     /translation="MARLVIISNRVPDSAEGGPRAGGLAVGLAEALIPGTLWFGWSGK
                     TAGETSTEASCIEADGRLYATIDLSESDYRAFYLGFSNGTLWPLFHMLPANTLYDRGD
                     YTVYRAVNRAFATALLPLLRPDDLIWIHDYQLLGVAAALREYGVGNRIGFFLHIPFPA
                     PALFELLPPAAELLEAMLAHDVIGFQIEQDRGHFLGAMQSSLGIAASGGVLQRNGRHV
                     RTIVTPIGIDADLFGALAANIARRIDARRVIESLAGRALMLGVDRLDYTKGLPERFEA
                     YRRFLQNYPEHRRRISYLQIAAPSREEVERYRALREALDHMTGAINGTYSDFDWVPLR
                     YMTRTAARSVIAGMYRIARIGIVTPLRDGMNLVAKEYVAAQNPADPGVLILSRFAGAA
                     IGLPEALLVNPFDVDAVAAAISTALVMPQDERQARHAALLGRVRTESAAAWCRAFTAS
                     LVA"
     gene            complement(1523..>1902)
                     /locus_tag="VEQ16_04280"
     CDS             complement(1523..>1902)
                     /locus_tag="VEQ16_04280"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HYP63077.1"
                     /translation="LAEAKANERGAVDHFNSIVLQALKETEQALALYGAELQHHDELL
                     AAQSEAQTEYSLAQNQYGAGGISTLDLLAAERTLTNANADVAASDTALVQDQISVFKA
                     LGGGWQAPSSNEAGGKGPAPGSG"
BASE COUNT          286 a          623 c          594 g          399 t
ORIGIN      
        1 tggccctggc cggacggcat gagcaggccc gcgccttgtt cgagcgtatc ctcgccgtgc
       61 gcaaccatgt cggtctgctc tcggaagatc tcattcccga ggccaatggc gcgccgcacc
      121 gtctctgggg caattttccg caaacctatt cgcaggtggg gctcattctg tgcgccatgc
      181 gcctgtctcg cagctgggag gatgggctgt ggcgcgcctc gtaatcatct ccaaccgcgt
      241 tccggactcg gccgagggtg gtccgcgcgc gggcgggctc gccgtggggt tggcagaggc
      301 gctgatcccc ggtacgcttt ggttcggctg gtccggcaag accgccgggg agacctcgac
      361 ggaagccagt tgcatcgaag ccgacggtcg gctctacgcc accatcgatc tcagtgaatc
      421 cgattaccgc gcattctatc ttggcttttc caatggcacg ctatggccgc tgttccacat
      481 gctgccggcc aatacattgt atgaccgtgg cgattatacc gtgtaccgtg ccgtcaaccg
      541 cgccttcgcc acggcgctgc tgcctttgct gcggcccgat gatctcatct ggattcatga
      601 ttaccagttg ctcggtgtcg ccgccgcgct gcgcgagtat ggtgttggca accgcatcgg
      661 cttcttcctg catatcccct ttccggcacc ggccttgttc gaattgctgc cgcccgcggc
      721 ggaattgctg gaggcgatgc tggcgcatga cgtgatcggg tttcagatcg aacaggatcg
      781 cgggcatttt ctcggcgcca tgcagagcag cctggggatt gccgcgagcg gcggcgtgtt
      841 gcagcgcaac ggccgccatg tgcgcaccat cgtcacgccc atcggtatcg atgcggattt
      901 gttcggtgcg ctggccgcca atatcgcgcg gcgcatcgat gcgcgccgtg ttatcgagag
      961 cctggccggc cgcgccttga tgctgggtgt cgaccggctg gactatacca agggcctgcc
     1021 cgagcgtttc gaagcttata ggcgtttcct gcaaaattat ccagagcata ggcgccgcat
     1081 cagctatttg cagatcgccg ccccctcgcg tgaggaggtg gagcgctacc gcgccttgcg
     1141 cgaggcgttg gaccatatga ccggtgccat caacggcacc tattccgatt tcgactgggt
     1201 gccgctgcgc tatatgacgc gcacggcggc gcgctcggtc attgccggca tgtaccgtat
     1261 cgcccgcatc ggcatcgtca cgccgttgcg cgacggcatg aatctcgtcg ccaaggaata
     1321 tgtcgcggcg cagaacccgg ccgatcccgg cgtgctcatc ctctcgcgct tcgccggtgc
     1381 cgccatcggc ctgccggagg cgctgctggt gaatcctttc gatgtcgatg cggtggcagc
     1441 ggcgatcagc acggcactgg taatgccgca ggatgagcgc caggcccgcc atgctgcgct
     1501 gctcgggcgg gtgcgcaccg aatcagccgc tgcctggtgc cgggccttta ccgccagcct
     1561 cgttgcttga cggcgcctgc cagccgccgc ctagcgcctt gaacacgcta atctggtctt
     1621 gcaccaaagc cgtatccgag gcggccacgt cagcgttggc gttggtcaag gttcgctccg
     1681 ccgccagcag atcgagcgtg ctgatcccgc ccgctccata ttgattctgc gccaggctgt
     1741 attcagtctg cgcctcgctc tgcgccgcga gcagctcgtc atgatgctgc agctcagcgc
     1801 cgtataaagc cagcgcctgc tcggtctctt tcaacgcctg cagcacgatg gaattgaaat
     1861 gatcgaccgc gccgcgttca ttggccttgg cctcggcaag ct
//
LOCUS       DASQCV010000284         1529 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_726968, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000284 DASQCV010000000
VERSION     DASQCV010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_726968"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..779
                     /locus_tag="VEQ16_04285"
     CDS             <1..779
                     /locus_tag="VEQ16_04285"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HYP63078.1"
                     /translation="WAPDVYQGAPTPVAAFLSAGPKAAAFAVFLRIFMTAFEPIAHGW
                     QPLVWGSALLSMIVGNFAALLQTNIKRMLAYSSIAHAGYVMVALTAAPATPDGGIGAA
                     MFYLAAYALMNIGAFAAVSHISGRGDRATSIDDLAGLGQRQPMMAAMFSIFLLSLIGV
                     PLTGGFFGKFYIFRAALESHLVWLTVIGLLTSAVAAYYYLRVLVVMYMHEPGEATLKI
                     EPPSAGLRLALILPAIGTLFLGIFPNWVLDFAGRSASLLK"
     gene            complement(946..>1529)
                     /locus_tag="VEQ16_04290"
     CDS             complement(946..>1529)
                     /locus_tag="VEQ16_04290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP63079.1"
                     /translation="GVDAVDGEAGLFEGIVGHRRLCSVYTGEEKADSPPRRISAQWGS
                     RAVRSRNTGGSASSSTTAASVPAPKLEAKAEPKPESKKQAKTEPKPGMAAAAKPELNA
                     EAGKRTAAAEPAGAAKAKPAGTRTAAGLHAQARQLLSDGKFAEAVEHLTAEDSRGPAY
                     ALAYNGRGFAQYRLKTYKEASADFDEAIRLNPT"
BASE COUNT          198 a          564 c          426 g          341 t
ORIGIN      
        1 tctgggcgcc ggatgtttac cagggcgcgc ccactccggt ggccgcgttc ctgtcagccg
       61 gtcccaaggc cgcggccttc gcggtcttcc tccgcatctt catgacggcc ttcgagccca
      121 tcgcccatgg ctggcagccg ctggtgtggg gctcggcgct gctctccatg atcgtcggga
      181 acttcgcggc gctgctccag accaacatca agcgcatgct ggcctatagt tccatcgcgc
      241 atgccggcta cgtgatggtg gctcttaccg ccgccccggc cactcccgat ggcggcatcg
      301 gcgccgccat gttctacctc gctgcctacg ccctgatgaa tatcggtgcc ttcgccgccg
      361 tcagccacat ctccggccgc ggtgaccgcg ccaccagtat cgacgacctg gccggcctcg
      421 gccagcgcca gcccatgatg gccgccatgt tctccatctt cctgctctcc ctgatcggcg
      481 ttccgctcac cggcggcttc ttcggcaagt tctacatctt ccgcgctgcg ctcgagtcgc
      541 atctcgtctg gctcaccgtc atcggcctgc tcaccagcgc tgtcgccgcc tactactacc
      601 tccgggtgct ggtcgtgatg tatatgcacg agcccggcga agcaaccttg aaaatcgagc
      661 ctccttccgc cggcctccgc cttgccctga tcctgccggc catcggcaca ctgttcctcg
      721 gcatcttccc gaactgggtt ctggatttcg ccggccgctc tgccagtcta ttgaaatagc
      781 cgcgaaggaa cgcgaatacg cacgaataga aagcccttat tcacgttgat tcgtctgcag
      841 tcgcggctta tttacttggt cagctggttc actttcgcca gatccgcgtc ggggcgggcc
      901 ttatcctccg cggcccgccg cgccgcggtt ttggtaggcc ttcccctaag tcggattcag
      961 ccggatcgcc tcgtcgaaat ccgcgctcgc ttccttgtat gttttgagcc ggtactgtgc
     1021 gaacccccgc ccgttgtacg ccagagcata cgccggacct cttgaatctt cggctgtgag
     1081 gtgctccact gcctccgcga attttccgtc cgacagcagc tggcgcgcct gagcgtgcag
     1141 gccggccgcg gtccgggttc cggccggctt tgccttcgcc gcgcccgccg gctccgctgc
     1201 agccgtcctc ttccccgctt ccgcgttcag ctccggtttc gcagcggccg ccattcccgg
     1261 tttcggctcg gtcttcgctt gtttcttcga ttccggcttc ggctcagctt tcgcttccaa
     1321 ttttggtgcg ggcacggagg cggcggtggt ggaggaggag gcgctgccgc cggtattcct
     1381 cgaacgcacg gcccggctgc cccactgcgc tgaaatacgc ctcggcggtg aatccgcctt
     1441 ttcctccccg gtgtacactg agcacagccg tctatgcccg acgatccctt cgaaaagccc
     1501 cgcctcgcca tcaaccgcgt ctacacccg
//
LOCUS       DASQCV010000285         1582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_64760, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000285 DASQCV010000000
VERSION     DASQCV010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64760"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..469
                     /locus_tag="VEQ16_04295"
     CDS             <1..469
                     /locus_tag="VEQ16_04295"
                     /inference="COORDINATES: protein motif:HMM:NF013279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HYP63080.1"
                     /translation="LMAFLNPDSDPQGAGFQLLQSLIAVGSGGFTGVGLMESKQKLFY
                     LPEAHTDFIYAVICEELGYIGALLVIALFAVYGWRGLRAAFSAPDNFGRLLALGITAM
                     VMFQALINFAVVLGMVPTKGIPLPFVSYGGSSLLVMLLATGVLLNISQQASNQ"
     gene            501..>1582
                     /gene="murG"
                     /locus_tag="VEQ16_04300"
     CDS             501..>1582
                     /gene="murG"
                     /locus_tag="VEQ16_04300"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: protein motif:HMM:TIGR01133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HYP63081.1"
                     /translation="MKLLIAGGGTGGHVFPAIAIAREWLSRGREREVVLVGTERGIEM
                     RLVPEAGLPLETLRAAGLKGKGGLTLVKNLSMLAPGTLDAWAILRKHRPVAAFGVGGY
                     AAGPMLLATWLGGIPNVIFEPNAEPGFTNKVLAGLSKRIATGYEVTAKGLGGKGVVTG
                     NPVRAEFFSIEPRVPERPLHLLITGGSQGALPINRAFVDAMDRLAARKDQLSVVHQTG
                     QRDYNAVRTAYARREFHSAEVVPFLGNMAERFAWADLIVCRAGAITVSEIAAAGRAAI
                     FIPFGHATDSHQLRNAQEMAKAGAGRLIVEQELTAERLTGEIFSLLDQPGEIRQLAAN
                     ARSLGRPNAARDIVDLVEEVAGVQGK"
BASE COUNT          277 a          500 c          516 g          289 t
ORIGIN      
        1 cctgatggcg tttctcaatc cggacagcga tccgcaaggt gccggcttcc agcttctgca
       61 atccctgatc gccgtcggct ccggtggctt taccggcgtg ggcctgatgg agagcaaaca
      121 gaagctcttc tacctgccgg aagcgcacac cgattttatc tacgccgtga tctgcgaaga
      181 gctgggctac atcggtgcgt tgttggtgat cgccctcttc gcggtttacg gctggcgcgg
      241 gctgcgggcg gcgttctccg ctcccgacaa ttttggccgg ctgctggcgc taggcatcac
      301 cgccatggtg atgtttcagg cgctgatcaa tttcgccgtg gtgctcggca tggttccgac
      361 gaagggcata ccgctgccgt ttgtcagtta cggcggctcg agtttgctgg tgatgttgct
      421 cgccaccggc gtgctgctga acatttctca gcaggcgtcg aaccagtgag cgcgggcgga
      481 agcatgcccg ggtgtcgcag atgaagctgc tcatcgcggg aggcggcacc ggcggccatg
      541 tctttccggc catcgccatt gcgcgcgaat ggctgtcgcg aggaagggaa agggaagtcg
      601 tgctggtggg gacagaacgc ggaatcgaaa tgaggttggt gccagaagcc ggcctgccgc
      661 tagagacgct gcgcgctgcc ggcctcaaag gcaagggcgg gctgacgctc gtgaagaatt
      721 tgtcgatgct ggctccgggg acgctcgacg catgggcgat tctgcgcaag caccggccgg
      781 tcgccgcgtt cggcgtcgga ggctacgccg ccggcccgat gcttctggcc acttggctcg
      841 gcggcatacc caacgtcatc tttgagccca atgccgagcc cggcttcacc aacaaggtgc
      901 tggcagggct ttcgaaacgc atcgccaccg gctatgaagt caccgcgaag ggactcggcg
      961 gcaaaggggt ggtgaccggc aatccggtgc gcgccgaatt cttctcgatc gagccgcggg
     1021 ttcccgagag gccgctgcac ctgctcatca ccggcggcag ccagggcgcg ctccccatca
     1081 accgcgcgtt tgtagacgcc atggaccgcc tggcggcgcg caaagaccag ctgagcgtgg
     1141 tccaccagac cggacaacgt gactacaacg cggtaagaac tgcctatgcc cggagagaat
     1201 ttcacagcgc ggaagtcgtg ccgtttctcg gcaacatggc cgagcgtttt gcctgggccg
     1261 acctcatcgt ctgccgtgcc ggagccatca ccgtctccga gatcgccgct gccggccgcg
     1321 ccgctatctt tatccccttc gggcatgcca ccgacagcca ccaactgcgc aacgcgcagg
     1381 aaatggccaa agcaggcgcc ggcagactga ttgtcgagca ggaactcacc gccgaacgcc
     1441 tgacgggaga gattttctcg ctgctcgacc agcccggcga gatccggcag ctcgcggcga
     1501 atgcccgttc gctcggtcgc cccaacgccg cgcgcgacat cgtcgacctt gtcgaagagg
     1561 tcgctggcgt gcagggaaaa aa
//
LOCUS       DASQCV010000286         3825 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2220450, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000286 DASQCV010000000
VERSION     DASQCV010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3825
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2220450"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..408
                     /locus_tag="VEQ16_04305"
     CDS             <1..408
                     /locus_tag="VEQ16_04305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP63082.1"
                     /translation="EALTEIVRWTQGYPFFLQEWGYQTWNAAPRSPISKADVDAATQK
                     ALQRLDDGFFKVRFERLTPRERDYVRAMASLEGTGPYRSGEIAAALRVTPQSIAPTRN
                     NLIAKGMVYAPAHGDTAFTVPLFEQYLRRVRPD"
     gene            427..3669
                     /gene="carB"
                     /locus_tag="VEQ16_04310"
     CDS             427..3669
                     /gene="carB"
                     /locus_tag="VEQ16_04310"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003622820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HYP63083.1"
                     /translation="MPKRTDIHSILIIGAGPIVIGQACEFDYSGAQACKALREEGYRV
                     ILVNSNPATIMTDPSLADATYIEPITPEMVEKIILKEKPDALLPTMGGQTALNTAMSL
                     AKSGTLERLGVQLIGAKAEVIDRAEDRLKFRDAMAEIGVMGPRSAIAHNREEASAALD
                     LVGLPAVIRPSFTLGGTGGGIAYNREEFFEICASGIDASPTNEVLVEESVLGWKEYEF
                     EVVRDSADNCIIVCSIENIDPMGVHTGDSVTVAPALTLTDKEFQIMRDASIACLRRIG
                     VDTGGSNVQFGINPVDGRMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDE
                     LQNDITKATPASFEPVIDYVVIKIPRFTFEKFPGTPALLSTSMKSVGEAMAIGRNFAE
                     ALQKGLRSLETGLSGLDEIPAPGDGGPDAFRAALSTPRPDRLLMAAQALRAGLSVEEI
                     HAACKFDPWFLQQMAQIIAAENEVKANGLPRDAYSFRRLKALGFADKRLAELIGQKEA
                     SVTKERLKLGVTPVYKRIDTCAGEFSSATSYMYSSFEGGFGQPSDEADVSDRRKVVIL
                     GGGPNRIGQGIEFDYCCVHAAYALREAGFETIMVNCNPETVSTDYDTSDRLYFEPLFA
                     EDVISLLRKEQEKGELLGCIVQYGGQTPLKLSQALEAAGIPILGTSADAIDIAEDRER
                     FQELLQRLGLRQPENGIARSIEQAEAIADRIGFPIIIRPSYVLGGRAMEIVYDRAGLS
                     RYMREAVRVSGENPVLIDRYLNEASEVDVDCICDGETVYVAGVMEHIEEAGIHSGDSA
                     CSIPPYSLSPAIVAELRAETVAMAKALGVVGLMNVQYAIQNDLIYVLEVNPRASRTVP
                     FVAKATGVPVAKIGARVMAGETLASFKLDDSVSTGHVAVKEAVFPFARFPNVDTLLGP
                     EMKSTGEVMGLDTNFARAFAKAQLGAGVVLPLKGTVFLSVKDGDKPAIVPVARRLVEL
                     GFAILATGGTAKCIADAGIPVGRVNKVLEGRPHCVDAIRSGEIQLIVNTAHGAQSVRD
                     SFDIRRSALTHGVPNFTTIAAARATAHAIAALSAGTLEVAPLQSYFPHSF"
BASE COUNT          708 a         1283 c         1150 g          684 t
ORIGIN      
        1 gaggcgctga cggagatcgt gcgctggacc cagggttatc cgttcttcct gcaggaatgg
       61 ggctatcaga cctggaatgc cgcgccccgc tcgcccatca gcaaggcgga cgtggatgcc
      121 gccacgcaga aagcgctgca gcggctggat gatgggtttt tcaaggtccg tttcgagcgc
      181 ctgacgccac gtgagcgcga ctatgtgcgc gccatggcca gcctcgaagg caccggcccc
      241 taccgctcgg gcgaaatcgc ggcggcactc cgcgtcaccc cgcaatccat cgcgccgacc
      301 cgcaataatc tcatcgccaa gggcatggtc tatgcccccg cccatggcga taccgccttt
      361 accgttccgt tgtttgaaca atatctgcgc cgcgtgcggc cggactgatt cgcgaaagag
      421 agcaccatgc ccaaacgcac agacatccac tccatcctca tcatcggcgc cggcccgatc
      481 gtcatcggcc aggcctgcga gtttgactat tccggcgccc aggcctgcaa ggctttgcgc
      541 gaggagggct accgcgtcat cctcgtcaat tccaacccgg cgacgatcat gaccgacccg
      601 tccctggcgg acgcaaccta tatcgagccc atcacgcctg agatggtgga aaaaatcatc
      661 ctcaaggaga agccggacgc gctgctgccc accatgggcg gccagaccgc gctcaacacc
      721 gccatgtccc tcgccaagtc cggcacgctg gagcggctgg gcgtgcaact gatcggcgcc
      781 aaggcggaag tcatcgaccg cgccgaggac cgtttgaaat tccgcgacgc catggcggaa
      841 atcggcgtga tggggccgcg ctccgccatc gcgcataatc gcgaagaagc ctcggcggcg
      901 ctggatcttg tgggattgcc cgcagtcatc cgcccctctt tcaccctcgg cggcacgggt
      961 ggcggcatcg cctataaccg cgaggaattt ttcgaaatct gtgcttccgg catcgacgct
     1021 tcgcccacca acgaggtgct ggtggaagaa tccgtgctcg gctggaaaga gtatgaattc
     1081 gaggtggtgc gcgattccgc cgataattgc atcatcgtct gctccatcga gaatatcgac
     1141 ccgatgggcg tgcatacggg cgacagcgtg acggtggccc ctgccctcac cctcacggac
     1201 aaggaatttc agatcatgcg cgatgcctcc atcgcgtgcc tgcgccgcat cggcgtggat
     1261 accgggggct ccaacgtgca attcggcatc aatcccgtgg atggccgcat ggtcgtcatc
     1321 gagatgaatc cgcgcgtctc gcgctcctcg gcactcgcct ccaaagccac cggcttcccg
     1381 attgcgaaaa tcgccgccaa gctcgccgtg ggctacacgc tggatgagct gcaaaacgac
     1441 atcaccaagg ccacacctgc aagcttcgag ccggtaatcg attatgtggt gataaaaatc
     1501 ccccgcttca ccttcgaaaa attccccggc acgccggctt tgctgtccac ctcgatgaaa
     1561 tccgtcggcg aggcgatggc gatcggccgc aatttcgccg aagcgctgca aaaaggtctg
     1621 cgctcactgg aaaccggcct ctccggcctg gatgaaattc cggcacccgg cgatggcggc
     1681 cccgatgcgt tccgcgccgc actttccacc ccgcgcccgg accggctgct gatggccgca
     1741 caggccttgc gcgccgggct gtcggtggaa gaaatccacg ccgcctgcaa attcgacccc
     1801 tggttcctgc agcagatggc gcaaatcatc gccgccgaga acgaggtgaa agccaacggc
     1861 ctgccgcgcg atgcctatag cttccgccgg ctgaaggcgc tcggcttcgc cgataagcgc
     1921 ctggccgagc tcatcggcca gaaggaagcc agcgtcacga aagagcgcct caagctcggc
     1981 gtcacgccgg tctataagcg catcgatacc tgcgccggcg agttttcctc cgccacttcc
     2041 tacatgtatt ccagctttga aggcggtttt ggccagcctt cggatgaggc cgacgtgtcc
     2101 gaccgccgga aagtggttat tctcggcggc gggcccaacc gcatcggcca gggcatcgaa
     2161 ttcgattatt gctgcgtgca cgccgcctat gcgctgcgcg aggccgggtt cgagaccatc
     2221 atggtgaatt gcaacccgga aaccgtctcg accgattacg acacctccga ccggctctat
     2281 ttcgagccgc tcttcgccga ggacgtgatc tcgctcctgc gcaaggaaca ggaaaagggt
     2341 gagctgctgg gctgcatcgt gcaatatggc gggcagacgc cgctgaagct gagccaggcg
     2401 ctagaagccg cgggcatccc catcctcggc acctcggccg atgccatcga catcgccgaa
     2461 gaccgcgagc gcttccagga gctgctgcaa cggctcgggc tgcgccagcc ggaaaacggc
     2521 atcgcccgct ccatcgagca ggccgaggcc atcgccgacc gcatcggctt ccccatcatc
     2581 atccgcccct cctacgtgct gggcgggcgg gctatggaaa tcgtctatga ccgcgccggg
     2641 ctgtcccgct acatgcgcga ggccgtgcgt gtgtccggcg aaaacccggt gctcatcgac
     2701 cgctatctca acgaagcctc ggaagtggac gtggattgca tctgcgatgg cgagaccgtg
     2761 tatgtcgccg gggtgatgga gcatatcgag gaagccggca tccattccgg cgatagcgcc
     2821 tgctccatcc cgccctactc gctctccccc gccatcgtgg cggaactgcg tgctgagacg
     2881 gtggccatgg ccaaggcgct gggcgtggtc gggctgatga atgtgcaata tgccatccag
     2941 aacgacctca tctatgtgct ggaggttaac ccccgcgcgt cccggacggt cccgttcgtg
     3001 gccaaggcca ccggcgtgcc ggtagcaaaa atcggtgcgc gggtgatggc gggcgagacg
     3061 ctggccagct tcaagctgga tgattccgtc tccaccggcc atgtcgcggt gaaggaagcc
     3121 gtcttcccct tcgcccgctt cccgaacgtc gacacgctgc tggggccgga gatgaaatcc
     3181 accggcgagg tgatggggct ggacacgaat ttcgcccgcg ccttcgccaa ggcgcagctc
     3241 ggcgccgggg tggtgctgcc gctgaaaggc acggtgttcc tctcggtgaa ggatggcgac
     3301 aagcccgcca tcgtgccagt cgcgcgccgc ctcgtggagc tgggcttcgc catcctcgcc
     3361 accggcggca cggccaaatg catcgccgat gccgggattc cggtggggcg ggtgaataag
     3421 gtgctggaag gaaggcccca ctgtgtggac gccatccgct ccggggaaat ccaactcatc
     3481 gtcaacaccg cccatggcgc gcagtcagtc cgggacagtt tcgacatccg ccgctccgct
     3541 ttgacccatg gcgtgcctaa tttcacgacg attgccgccg ccagggccac cgcgcacgcc
     3601 attgctgccc tcagcgcagg cactcttgaa gtcgcgccgc ttcagtcgta ctttccccat
     3661 tccttctaag ccgcccccct gttcaaccag cgcgggcggc ttgccttgtt tttcaacccc
     3721 tagccccgtc gagggcgccg acgcccttga ggagtaaaag tgcagaaatt ccccatgacc
     3781 gcctctggtc tcgtggcact cgaagatgaa ttgcggaatt tgaag
//
LOCUS       DASQCV010000287         1663 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_727502, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000287 DASQCV010000000
VERSION     DASQCV010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_727502"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1627)
                     /locus_tag="VEQ16_04315"
     CDS             complement(<1..1627)
                     /locus_tag="VEQ16_04315"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HYP63084.1"
                     /translation="MRAPRTPQEEILCGLFAEVLGVERVGIEENFFALGGDSIVSMQL
                     VSRARKAGLLITPRAVFTHQTVETLAAVATPVDQGSSVVTDIAVGALPLTPIVHWLLE
                     RGGPIEGFNQAMLLQVPAGLQEHHLRAALQAVLDHHDALRLRLVRAADAGAFSLEVAA
                     CGAIDAQTCLHRIDSAGVGEEARRSRIEAQAQAAQRRLNPSCGVMLQALWFDAGAQAS
                     GRLLLMIHHLAVDGVSWRILLPDLAVAWEAAVRGQPPMLATRSTSFRGWAHRLMGEAQ
                     KRAGELSFWRAQQSGPAVSLVEDVLDPARDTLGQVGHLTLTLPSAITGALLGPVPAAF
                     HGGINDVLLTALTLAIVSWCRGHGRDSAAAVLIDVEGHGREGIFADVDLSRTVGWFTS
                     LYPLRLDVGPVDLSDALTGGPALGRAVKSIKEQLRAVADNGLGYGLLRYLNAQTASEL
                     AGLARPQIGFNYLGRFPAAGSGDWTAADEPLTLASGDAAMALAHCIEVNALTLDGSNG
                     PTLTAHWSWSAALFSPAEARDLAQGWFEVIEALV"
BASE COUNT          344 a          636 c          439 g          244 t
ORIGIN      
        1 gcaccagcgc ctcgatcacc tcaaaccagc cctgcgccag atcgcgggcc tcggccggcg
       61 agaacagcgc agccgaccat gaccagtgcg ctgtcagcgt aggtccattg ctgccgtcca
      121 aagtgagcgc attgacttca atacagtgcg caagcgccat ggcagcatcg ccgcttgcta
      181 atgtcagcgg ctcgtctgca gcggtccaat ctccagaccc agccgcaggg aagcgaccga
      241 gatagttgaa gccaatctgc ggccgggcca aaccagcaag ctcggatgcc gtctgcgcat
      301 tgagatagcg caacagacca tagccaagcc cattatccgc taccgcgcgc agctgctcct
      361 tgatgctttt gactgcccgc ccaagcgcag gaccacccgt gagcgcatcc gaaagatcaa
      421 ccgggcccac atccagccgc agcggataaa ggctcgtgaa ccagcccacc gtccgcgaca
      481 ggtccacatc ggcaaatatg ccttcccgcc cgtgcccctc cacatcgatc aacaccgctg
      541 ccgcgctgtc gcggccatgc ccgcggcacc agctcacaat cgccagcgtc aacgccgtca
      601 gcaggacatc attgatcccg ccatgaaacg ccgccggcac cggccccagc agtgcgcccg
      661 tgatggcgct cggcagcgta agcgtcagat gccccacttg ccccagcgtg tcacgcgccg
      721 gatccagcac atcctcaacc agcgaaacag ccggcccgct ttgctgcgcg cgccagaacg
      781 aaagctcccc cgcgcgcttt tgcgcctcac ccataagccg gtgcgcccag ccccggaacg
      841 acgtgcttcg cgtcgccagc atgggtggtt gcccgcgcac ggcagcttcc cacgccacag
      901 caagatcagg aagcaggatg cgccacgata ctccatcgac cgcaaggtga tggatcatca
      961 gcaacagtcg accgctcgcc tgcgctccgg catcaaacca cagcgcctgc aacatcaccc
     1021 cgcaagaagg gttaagccgc cgctgtgccg cttgcgcctg cgcttcaatc cggctccgcc
     1081 tcgcctcttc gccaactccg gcactatcga tgcggtgcag acacgtttgc gcatcaatcg
     1141 ctccgcacgc cgccacttca agcgaaaacg cacccgcatc tgcagccctc accagccgca
     1201 gccgcaatgc gtcatgatga tcaagcaccg cctgcagcgc cgctctcaga tgatgctcct
     1261 gcaggcccgc cggtacctgc aaaagcatgg cttggttgaa gccttcaatc ggcccgccac
     1321 gctccagcag ccagtgcacg attggcgtga gcggcaaggc cccgaccgca atatccgtta
     1381 cgacggacga accctgatcg acaggcgtgg cgaccgcagc aagcgtctca accgtctgat
     1441 gcgtaaagac cgcgcgcggc gtgatcagca gtcccgcctt gcgcgcgcgg cttaccaact
     1501 gcatcgagac gatgctgtcg cccccgagtg caaagaaatt ctcctcaatc ccaacccgct
     1561 caacccccag cacctccgca aacagcccgc acaggatctc ctcctgcggc gtgcgcggcg
     1621 cgcgcatcac cccaagccct cgccccgcag gcgcaggcag cgc
//
LOCUS       DASQCV010000288         6984 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_727745, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000288 DASQCV010000000
VERSION     DASQCV010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6984
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_727745"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..512)
                     /locus_tag="VEQ16_04320"
     CDS             complement(<1..512)
                     /locus_tag="VEQ16_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HYP63085.1"
                     /translation="MLTLSVLRCPDAVPPETKRVSGGEFRIGRGPDNDWIMPDPERLL
                     SKKHCIIAFRNGGWAIADTSTNGTFLNRDGEPLGQGQVRALTDGDRIRFGAYEIEVRI
                     TDDQLGFGPAPAATRGRSGFDDPFGDNPLAPPPPPPAATFTTQAFGSSDPLFGGMPAA
                     QPSVTLPGDF"
     gene            complement(573..968)
                     /locus_tag="VEQ16_04325"
     CDS             complement(573..968)
                     /locus_tag="VEQ16_04325"
                     /inference="COORDINATES: protein motif:HMM:NF025047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4150 domain-containing protein"
                     /protein_id="HYP63086.1"
                     /translation="MFTNTQMMGMDLGFPDVCLTPAGPAVVPIPYPNIAMGPTAIPSQ
                     FTMFIMAMPVHNLGTEVPLTNGDNAGVATGVASGTVMGPSRHLTGAFTVLVDGMPLTR
                     LTSMSLQNSTNAPGVRLVPSQPVMLVLSP"
     gene            complement(978..1568)
                     /locus_tag="VEQ16_04330"
     CDS             complement(978..1568)
                     /locus_tag="VEQ16_04330"
                     /inference="COORDINATES: protein motif:HMM:NF023482.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3540 domain-containing protein"
                     /protein_id="HYP63087.1"
                     /translation="MTALQGLKLDAVGLSGGAQAFAARLLAREGAALCLDHDGEQRSA
                     RLALGCTYQPEPGDLVLAVPAGADIWVTALLARESGAPLRMAAPGGLTLETDGDLTVT
                     APRAREKIGELLHIGGKLVAELARLDLVAGLASTIAQQVTLHAGSYLRQVDSLEQVKA
                     GSIIQQAETSLELRAENAFLSADNLVRMDAEQVHIG"
     gene            complement(1584..2633)
                     /locus_tag="VEQ16_04335"
     CDS             complement(1584..2633)
                     /locus_tag="VEQ16_04335"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HYP63088.1"
                     /translation="MKTLAELSEMIDNLDLVRGLSLAGGDFAGAMFAEGMFEAVDFSG
                     ADLTGADLREAKLVNCRFDGAKLDDAILRKATIAQSSFQKARLHRARAGFASFVMTDL
                     TGAQLRGASLDYVSFANCKLGGVNLAGAVLERTTMADCEVAGIDLSGLNFMRCAMMNP
                     DLRQSSLAGTTFFRSAFIGAKLAGRKLPGISIPACLLNDADFSGCDLSEADFSQSVLA
                     KANFSGANLRGANLSRAVLKGANLAGADLSGANLTQAILVEAQAAQAQFSGAILDQCT
                     ATALSAPGARFTQADLTRTDFSHAMLEGANFAGARFNRTNLHAIADQNAIFTDRNGIF
                     GTDRELLRAEEWHRY"
     gene            complement(2630..5350)
                     /locus_tag="VEQ16_04340"
     CDS             complement(2630..5350)
                     /locus_tag="VEQ16_04340"
                     /inference="COORDINATES: protein motif:HMM:NF021456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2169 domain-containing protein"
                     /protein_id="HYP63089.1"
                     /translation="MRTVKPTVLGVLTRPFEYRREFHLGIAVTAFVPLGGKPALLAET
                     TMWPFLGGELPPDQPLDAIMPKSHAEFLAKATAYAPGGGAVPQLRAGIKLGTITKTLG
                     VYGERFILGERPTEPKPFTTMPIDWAHAYGGAGVAENPLGLGAQPVETPAGRLLPAAN
                     IVTNTPGTGYRTPAGFLPLDQMWPQRARLAGTYGDDWLKNDFPGFPRDIDWRFFNAAP
                     ADQQFSGMLRGDEDYALENLHPTQPLITGRLPGIAPRFFIRRKGSAALEEVPLSLTTV
                     WFFPHALRLVLVHHGHARLREEDGADVEIGLLGADRLGAPRPVAEFAEVLARRLDRNN
                     AAQLALRDDLLVPAELVVPDPVLAETAAKMKTGGLTAQRRRRRLEQSHAKIRAAVAEA
                     GHDPDKEVPPLPPERPVPTLDELPDHIAGVQAWADAESARAEAQVAKGKAALTPRFLA
                     SVAAVGGTMPDEGAALPAGPKGPPPPAGDAMGPLRELRSKIATLQDDVGTKLDEVKIP
                     PQLTGKIDLSEMEKFRKIEQLAQIDEMLQAVPGPEAAEEVTRKGRNSYRLMAHYQQPA
                     DPRPDAQQEALRQLISGDPAAARAHYDFSGADLSGLDLSGRDLSGICLDGANLAGCNF
                     TGARLANAVFAHARMGSCVLDGADLTGANLGKAVLVRAFLRKAALKEAILNGADLRRA
                     NLAGADLEKAELLDADLEASDFSGARAPGLLMMKAKLQGWYAPGINLDKAKFLETDLT
                     GANFAGASLFKVAFLTCKLDNADFSSARMRKSVFVKASSARGANFTKADLTGANLRET
                     PLAGADFSVAVLAEADVSKTDLTGAKLPRVNAVSARLTAATLARADLFHGNFWKADLA
                     NADLRGANLTEICVQDANMSRVRLDTESRTAGMITTRMRYLPRYQPQAAP"
     gene            complement(5347..5703)
                     /locus_tag="VEQ16_04345"
     CDS             complement(5347..5703)
                     /locus_tag="VEQ16_04345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3592 domain-containing protein"
                     /protein_id="HYP63090.1"
                     /translation="MPPLVIFGSALAALVPLAVVAAVFVPMLLGHFRTQNILAHGTPA
                     QARIIALTPTNELYNYQPVAVLTLDVMPDGAPSYQASVRQVITPINANYFAVGNMIPV
                     KFDPAHPDRIAIVSGP"
     gene            complement(5736..>6984)
                     /gene="tssI"
                     /locus_tag="VEQ16_04350"
     CDS             complement(5736..>6984)
                     /gene="tssI"
                     /locus_tag="VEQ16_04350"
                     /inference="COORDINATES: protein motif:HMM:TIGR03361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type VI secretion system tip protein TssI/VgrG"
                     /protein_id="HYP63091.1"
                     /translation="HGTGRRAVFSPGYTVELDTADAQALDIKGKLLFTAVWHEAVDYS
                     FVTQDAEPAYYRNRFEAIPAERPYRPACATPKPVVQGVQCAVVVGPPGEYIYTDEHGR
                     VKVRFFWDRNPFGNPDENRSCWLRVSQAWADGKFGGVHLPRIGQEVLVDFLEGDPDRP
                     LVTGRVYNGDNAHPYELPGNKNQSGFKSQSVPSNGGWNEFRFDDTGGSEEIYLRAQHD
                     HNHWVGHDHDHTVGNDYNITINNNYTVNTTSTESSTSAESNKTTGVSNEVIGVKNEAV
                     GVASEAIGMQFEVVGTEVVAILGKAEAILAQAAAIGFSAEAIGMNVAYKYLDNEYGVT
                     KGTVYSFGTNSYITYVNDYILKKDNAGVKVDIAEVTIKNSPIEIKTSEIGTDACATKL
                     EQVEAKFGTITARLTSIELDMLT"
BASE COUNT         1215 a         2227 c         2268 g         1274 t
ORIGIN      
        1 tcgaaatcgc cgggcagcgt gacagaaggt tgcgcggccg gcatgccgcc gaacagcggg
       61 tcgctgctgc cgaaggcctg ggtcgtgaat gtcgcggccg gtggcggcgg gggcggcgcc
      121 agaggattat cgccgaacgg atcatcgaac ccgctgcgcc cgcgcgtggc ggccggtgcg
      181 gggccgaagc ccagctggtc atccgtgatg cgcacctcga tctcgtaggc gccgaagcgg
      241 atgcggtcgc catcggtcag cgcgcgcacc tggccctggc ccagcggctc gccgtcccgg
      301 ttgagaaacg tcccgttggt gctggtatcg gcaatggccc agccgccatt gcggaaggcg
      361 atgatgcaat gtttcttcga gagcagccgc tccgggtccg gcatgatcca gtcattgtcc
      421 ggaccgcggc cgatacggaa ctcgccgccg ctcacgcgtt tggtttccgg cggcaccgcg
      481 tccgggcagc gcaggacgct gagggtcagc atggcggcat ctccttgcag attcgcttcg
      541 ggctcatggc cgtatgataa gcggatagca tttcagggcg acagcacaag catgaccggc
      601 tggctcggca caagccgcac accgggagcg ttggtagaat tctgcaacga catggaggtg
      661 agcctggtca gcggcatgcc gtccaccagc acggtgaagg cgccggtgag atggcgcgag
      721 gggcccatca ccgtaccgga agcaacaccg gttgccacac cggcattatc accgttcgtt
      781 aacggaactt cagtgccgag attatgcacc ggcatggcca tgatgaacat ggtgaactgg
      841 cttggtatcg ccgtcggccc catggcgatg ttggggtagg gaatcggaac cacggccggt
      901 cccgccgggg tgaggcagac atcgggaaag cccagatcca tgcccatcat ttgtgtgttc
      961 gtgaacatgg cgtcccctca gcctatatgc acctgttcgg cgtccatgcg cacaagatta
     1021 tcggcggaca ggaacgcatt ttccgcgcgc agctcaaggc tggtctcggc ctgctggatg
     1081 atgctgccag ccttcacctg ctccagactg tccacctggc gcagatagct gccggcatgc
     1141 aatgtcacct gctgcgcgat ggtgctcgct agcccggcaa cgagatcaag ccgcgccagc
     1201 tctgccacca gtttcccgcc tatatgcaga agctcgccga ttttttcgcg cgcacgcggc
     1261 gccgttacgg tgaggtcgcc atcggtctcc agcgtcagcc cgccaggcgc tgccatacgc
     1321 agcggcgcgc cgctctcgcg cgccagcagc gccgtcaccc agatgtccgc ccccgccggt
     1381 acggccagaa caagatcgcc cggctccggc tggtaggtgc aacccagcgc cagacgggcg
     1441 ctgcgttgtt cgccgtcatg gtccaggcaa agggccgcgc cttcgcgcgc cagcagccgc
     1501 gccgcaaagg cttgcgcccc cccgctcaag cccacagcat ccagtttcag cccctgcagc
     1561 gccgtcatcc catcctcccc gcctcagtac cggtgccatt cttccgcgcg cagcaattcg
     1621 cggtccgtac cgaatatgcc gttgcggtca gtgaatatcg cattctggtc cgcaatggca
     1681 tgcagattcg tgcggttgaa gcgcgccccg gcaaaattcg ctccctccag catggcatgg
     1741 ctgaaatcag tgcgggtgag gtcggcttgg gtgaagcgtg cccccggcgc gctgagcgcg
     1801 gtcgccgtgc attggtcgag gatggcgccg gaaaactgcg cctgcgcggc ttgcgcctcc
     1861 acgaggatgg cctgcgtcag gttggcgccg ctcaaatccg cgcccgcaag attggcgcct
     1921 ttcagcacgg cgcgtgacag gttggcgccg cgcagattcg ctcccgaaaa attcgccttg
     1981 gccaggacgg attgcgagaa atccgcctca ctgagatcgc agccggaaaa atccgcatca
     2041 ttgagcaggc aggcggggat ggaaatgccg ggcagcttgc ggccggcgag ctttgcgccg
     2101 atgaacgcgc tgcggaagaa ggtcgtgccg gcgaggctgc tctggcgcag gtctggattc
     2161 atcatcgcgc aacgcatgaa attgagtccg gagagatcga ttccggccac ctcgcaatcg
     2221 gccatggtgg tgcgttccag cacggcgccg gccagattga cgccaccgag cttgcaattg
     2281 gcgaagctca catagtcgag cgaggcgccc ctcagctgcg cgccggtcag atcggtcata
     2341 acgaagctgg caaaaccggc ccgggcacgg tgcagccggg ccttctggaa cgaggactgg
     2401 gcgatcgtgg ccttgcgcag aatcgcatcg tccagctttg cgccgtcgaa acggcaattg
     2461 accagcttgg cctcgcgtag atcggcgccg gtaaggtcgg cgccggagaa atccaccgct
     2521 tcaaacatcc cctcagcgaa catggcgccg gcaaaatcgc cgccagccag cgaaaggccg
     2581 cggaccagat cgagattgtc gatcatttcg gacagttcgg cgagtgtctt catggcgccg
     2641 cctgcggctg gtagcgcggc agatagcgca tgcgggtggt gatcatgcca gccgtgcggc
     2701 tctccgtatc gagcctgacg cgtgacatgt tggcatcctg gacgcagatc tcggtgagat
     2761 tggcgccgcg gagatcggca ttggcgagat cggctttcca gaaattaccg tggaaaaggt
     2821 cagcccgcgc cagcgtggcg gcggtgaggc gggcggagac ggcgttcaca cgcggcagtt
     2881 ttgccccggt cagatcagtc ttggagacat ctgcctcggc caggacggcg acggagaaat
     2941 cggcacccgc gagcggcgtt tcacgcaagt tggcgccggt aagatcagcc ttggtgaaat
     3001 tggcgccgcg cgcgctgctc gccttcacga acacggattt gcgcatgcgg gcggaggaaa
     3061 aatcggcatt gtcgagcttg caagtcagga acgccacctt gaacagcgac gcgccggcga
     3121 aattggcccc ggtcaggtcg gtctccagga atttggcttt atcgagattg atccccggcg
     3181 cgtaccagcc ttgcagcttg gctttcatca tcagcaggcc gggggcgcgg gcgccggaaa
     3241 aatcactggc ttccaggtcg gcatccagca actcggcttt ttcgagatcg gcgccggcga
     3301 gattcgcccg gcgcagatcg gcgccattga ggatggcttc tttcagcgcc gctttgcgca
     3361 aaaaggcgcg caccagcact gccttgccga gattggcgcc ggtgagatcg gcgccgtcca
     3421 gcacacagct gcccatccgc gcatgggcga atacggcatt ggccaggcgc gcgccggtaa
     3481 aattgcagcc ggccagattg gccccgtcca ggcagatgcc agagaggtcg cgcccggaca
     3541 ggtcgagccc gcttaaatcc gcgccggaaa aatcgtaatg agcgcgtgcc gccgccgggt
     3601 cgccgctgat cagctggcgc agcgcctcct gctgcgcgtc gggcctgggg tcggccggtt
     3661 gctggtaatg cgccatcagc cggtagctgt tgcggccctt gcgcgtcacc tcctcggccg
     3721 cttcagggcc gggaacggct tgcagcatct catcaatctg cgcgagctgc tcgatcttcc
     3781 ggaatttttc catttccgag agatcgatct tgccggtgag ctgcggcggg attttaacct
     3841 catcaagctt cgtgccgaca tcgtcctgca gggtggcgat cttgctgcgc agctcacgca
     3901 gcggccccat ggcgtcgccg gctggcgggg gcgggccctt cggccccgcc ggtagcgcag
     3961 caccctcatc tggcatcgtg ccgccgaccg cggcaacact ggcgaggaag cgcggggtca
     4021 acgccgcctt gcccttcgcg acctgggctt cggcccgcgc actctccgca tcggcccagg
     4081 cctgcacgcc ggcgatatgg tccggcagct cgtccagcgt gggcaccggc ctctcgggcg
     4141 gcagaggcgg cacctccttg tccgggtcat gcccggcttc ggccacggcg gcgcggatct
     4201 tggcgtgact ctgctccaga cggcggcggc ggcgttgggc ggtcagcccg cccgttttca
     4261 tcttcgccgc ggtttcggcc agaaccgggt cgggcaccac gagttccgcc ggcaccagga
     4321 ggtcgtcgcg caaggcgagt tgggcggcgt tattgcggtc cagccgccgt gccagaacct
     4381 cggcgaattc cgctaccggg cgcggcgcgc caagccggtc cgcccccagc agcccgattt
     4441 cgacatccgc gccatcctcc tcgcgcagtc tggcatggcc atgatgcacc agcaccagcc
     4501 gcaacgcgtg cggaaagaac cacaccgtgg tcaggctgag cggcacctcc tccagcgccg
     4561 cgctcccctt gcggcggatg aagaaacgcg gcgcgatgcc gggcaggcgg ccggtgatga
     4621 gcggttgcgt ggggtgcagg ttttccagcg cataatcctc gtcgccgcgc agcatgccgg
     4681 aaaattgctg gtccgccggg gcggcattga aaaatcgcca gtcgatgtca cgcgggaagc
     4741 cgggaaaatc gttcttcaac cagtcatcgc cataggttcc ggccaggcgc gcgcgttgcg
     4801 gccacatctg gtccagcggc agaaacccgg cgggcgtgcg gtagccggtt cccggcgtgt
     4861 tggtaacgat attggcagcc gggagcagcc gccccgcggg cgtctccacc ggctgcgcgc
     4921 ccaggccgag cggattctcc gccactccgg cgccgccata agcatgcgcc cagtcaatcg
     4981 gcatggtggt gaatggcttc ggctcggtcg ggcgctcacc cagaataaaa cgctcgccat
     5041 acacgccgag tgtcttggtg atggtgccga gctttatgcc ggcgcgcaat tgcggcacgg
     5101 cgccgccgcc cggcgcatag gcggtggcct tggccagaaa ttcagcatgg cttttcggca
     5161 tgatggcgtc cagcggctga tctggcggca actcgcctcc caggaacggc cacatggtgg
     5221 tttccgccag caaagcgggc ttgccgccca gcggcacgaa ggcggtaacg gcgatgccga
     5281 ggtggaattc ccggcgatat tcgaagggcc gggtgagcac ccccagtacg gtgggtttga
     5341 cggttctcac ggcccgctca cgatcgcgat ccggtcggga tgcgccggat cgaacttcac
     5401 gggaatcata ttgccgacag cgaaataatt ggcgttgatc ggcgtaatga cctgacgcac
     5461 gctggcctga taggaaggcg cgccgtccgg catcacatcc agcgtgagca cggccacggg
     5521 ctgataatta tagagctcat tagtcggggt gagggcaatg atgcgcgcct gcgccggcgt
     5581 gccatgagcc aggatattct gtgtccgaaa atggcccagc agcatcggca caaacacggc
     5641 cgcgacaacg gccaacggta ccagtgctgc tagcgcggag ccaaagatta cgagcggtgg
     5701 catggaaaac ggcctgcgga cgttgcgcag ctccatcatg tgagcatatc cagctcgatt
     5761 gatgtgagcc tggcggtgat ggtgccgaat tttgcctcga cttgctcaag ttttgtggcg
     5821 cacgcgtcgg tcccgatctc ggatgtcttg atttcgatcg gactgttctt gatggtgacc
     5881 tcagcgatat cgaccttcac cccagcattg tcttttttca ggatatagtc attgacgtag
     5941 gtgatgtagc tgttcgttcc gaacgaatac accgtgcctt tcgtgacacc atattcattg
     6001 tcgagatatt tataggcgac attcatgccg atcgcctcgg cggagaagcc gatggcggcg
     6061 gcctgcgcca ggatggcttc ggccttgccg agaattgcca cgacctccgt gccgacgacc
     6121 tcgaactgca tgccgattgc ctcgctggcg acaccgaccg cctcgttctt cacgccgatg
     6181 acctcgttgc tgacacccgt ggtcttgttg gactccgcgg aggtcgaact ctcggtcgag
     6241 gtagtattga cggtatagtt attgttgatg gtgatgttgt agtcgttgcc gaccgtatga
     6301 tcatggtcat gcccgaccca atgattatgg tcgtgttgcg cgcgcagata gatttcctcg
     6361 ctgccccccg tatcgtcgaa gcggaattca ttccagccgc cattggacgg gacgctctgg
     6421 ctcttgaagc cggactggtt cttgttgccc ggcagctcat agggatgagc attgtcgccg
     6481 ttatagacgc gccccgtcac cagcggccgg tccgggtcgc cttccaggaa atccaccagc
     6541 acttcctggc cgatgcgcgg cagatgcacg ccgccgaact tgccgtccgc ccaggcctgg
     6601 ctcacgcgca gccagcagga gcggttctcg tccgggttgc cgaacgggtt gcggtcccag
     6661 aagaagcgca ctttcacgcg cccatgctcg tccgtataga tatattcgcc gggcgggccc
     6721 accaccacgg cgcattgcac gccctgcacc acgggcttgg gcgtggcgca agcggggcgg
     6781 taagggcgtt cggcgggaat ggcctcgaaa cggttccggt aataggccgg ctccgcgtct
     6841 tgcgtcacga agctgtaatc cacggcctcg tgccatacag cggtaaagag gagtttaccc
     6901 tttatatcca gcgcctgcgc atccgctgtg tccagctcca cggtgtagcc gggggagaat
     6961 accgcgcgcc ggcccgtgcc atgc
//
LOCUS       DASQCV010000289         1869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_396597, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000289 DASQCV010000000
VERSION     DASQCV010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_396597"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..792
                     /gene="lysK"
                     /locus_tag="VEQ16_04355"
     CDS             <1..792
                     /gene="lysK"
                     /locus_tag="VEQ16_04355"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492169.1"
                     /note="class I; LysRS1; catalyzes a two-step reaction,
                     first charging a lysine molecule by linking its carboxyl
                     group to the alpha-phosphate of ATP, followed by transfer
                     of the aminoacyl-adenylate to its tRNA; in Methanosarcina
                     barkeri this enzyme charges both tRNA molecules for lysine
                     that exist in this organism (but the tRNALysUUU very
                     poorly) and in the presence of LysRS2 can charge tRNAPyl
                     with lysine; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HYP63092.1"
                     /translation="AICRALGKEPPLNLTYELFLDEQGRKISKSKGNGLSIDEWLTYA
                     PKESLAMFMYHAPQRAKRLFFDVIPRATDDYINNVAALPTAENPHDNPAWHIHAGKLP
                     QGAGSPIGFTMLLNLASVINADSPEMLWGFIRAYIPGANAESYPFLAELVHHAIAYNR
                     DFVAPAKQYRPATEVERGALTDLAKSLKADEQAQYPGDTAAEKLQNLVYAIGKRHPLA
                     PLKAWFDCLYQVLLGTTEGPRFGGFIALYGVERTVALIETALARD"
     gene            865..1764
                     /locus_tag="VEQ16_04360"
     CDS             865..1764
                     /locus_tag="VEQ16_04360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63093.1"
                     /translation="MVAGLHGVLKKIGLGDVLAAFANTPRRQVIHALLLLGLSLCIMC
                     VYDVPGIIFARRSEKFPRLGLQRIGLASFCAYALSHVLGAPALSAAAIRVRLYAQWGV
                     PSTGIGRIIALSGSNFALGLFAMLGSLILVHPYAVPVFGHAAPLTIRLLGAALVSLPA
                     AYVLAARNRDSVKLFGRAIALPGARLALAQILLAAADMSLSCAILFTVLPDAPGLTYP
                     HTLSLYLAAFAAGLFSGLPGGVGVFDSVLLLGFSAYLPPAPALGAILLFRVMYFLGPA
                     CLAGVCYAGHELWVHMKAPGERS"
BASE COUNT          297 a          712 c          510 g          350 t
ORIGIN      
        1 gccatctgcc gggcgctggg caaggagccg ccgctcaacc tcacctatga gctgttcctg
       61 gacgagcagg ggcgcaagat ttcgaagtcc aagggcaacg ggctctccat cgacgaatgg
      121 ctgacctatg cgcccaagga aagcctcgcc atgttcatgt accacgcccc gcagcgcgcc
      181 aagcggctgt tcttcgacgt cattccccgc gccacggacg actacatcaa caatgtcgcc
      241 gccctgccca cggccgaaaa cccacacgac aacccggcct ggcacatcca tgcaggcaag
      301 ttgccccagg gcgctggctc gcccatcggc ttcaccatgc tgctcaacct ggcctcggtc
      361 atcaatgccg acagcccgga gatgctctgg ggcttcatcc gcgcctatat ccccggcgcc
      421 aatgccgaat cctacccgtt cctggccgag ctggtgcatc acgccatcgc ctataaccgc
      481 gatttcgtag ccccggccaa gcaataccgc cccgccaccg aggtggagcg cggcgccctc
      541 accgacctcg ccaaaagcct gaaagcggac gagcaggcgc aatatcccgg cgacacagcg
      601 gcggaaaaac tgcagaacct cgtctacgcc atcggcaagc gccatccctt ggcgccgctg
      661 aaagcatggt tcgactgcct ctaccaggtg ctgctcggca caaccgaagg cccgcgcttc
      721 ggcggcttca tcgccctcta tggcgtggag cgcaccgtcg ccctcatcga aaccgccctg
      781 gccagggact gacccctggc cggcgcaaaa cacgccgccc tgaaatatct accccccgcg
      841 cttggctttc tggtcctggc cggggtggtc gcggggctgc atggcgtgct gaagaaaatc
      901 ggcctgggcg acgttctcgc cgccttcgcc aatacaccgc gcaggcaggt catccacgcg
      961 ctgctgctgc tcggcctctc actctgcatc atgtgcgtct atgacgtgcc tggcatcatc
     1021 ttcgcccggc gcagcgagaa attcccccgg cttgggctgc aacgcatcgg cctcgcctca
     1081 ttctgcgcct atgcgctcag ccatgttctc ggcgccccgg ctctgagcgc cgccgccata
     1141 cgcgtgcggc tttatgcgca atggggcgtg ccgagcaccg gcatcggccg catcatcgct
     1201 ttgtccggca gcaattttgc cctcggcctg ttcgccatgc tggggtcgct gatcctcgtc
     1261 catccgtatg ccgtgccggt cttcggccat gccgccccgc tcaccatccg cctgctcggc
     1321 gccgccctcg tcagccttcc tgccgcctat gtgctggccg cccgcaaccg cgattccgta
     1381 aaactcttcg gccgcgccat cgccctgccc ggcgcgcgcc tggccctcgc gcaaatcctg
     1441 ctcgccgcgg cggacatgtc tctctcctgt gccatcctct tcaccgtgct gcccgatgcc
     1501 cccggcctca cctacccgca tacgctcagc ctctatctcg ccgccttcgc cgccggcctg
     1561 ttttccggcc tgcccggcgg ggtcggggtg ttcgattccg tgctcctgct cggcttttcc
     1621 gcatacctgc cccccgcccc cgcgctgggg gctatattgt tattccgggt catgtatttt
     1681 ctcggtccgg catgcttggc cggtgtctgt tacgccggcc acgagctttg ggtgcacatg
     1741 aaggcgccag gagaaagatc atgaacgtac aacagaccat caccccggtt gacggcagcg
     1801 tttacgttga acgcccctac gccaccgccg cccagatcaa cgccactttc gaccgcgccg
     1861 taaaagcgc
//
LOCUS       DASQCV010000290         1724 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1724236, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000290 DASQCV010000000
VERSION     DASQCV010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1724236"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..184)
                     /locus_tag="VEQ16_04365"
     CDS             complement(<1..184)
                     /locus_tag="VEQ16_04365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63094.1"
                     /translation="MPPPQEAPVGVSMVFDHGGQQQNEAPPKSVQGLPQPAQTPTAPP
                     PPPPQPQAQVNLGLPQN"
     gene            complement(327..845)
                     /locus_tag="VEQ16_04370"
     CDS             complement(327..845)
                     /locus_tag="VEQ16_04370"
                     /inference="COORDINATES: protein motif:HMM:NF024828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper family protein"
                     /protein_id="HYP63095.1"
                     /translation="MTRPYLSLGLLSLMALGGCTAATPTGPSVVAMPGQGQTWQQFQD
                     ADAMCRHYAQSHMPYPGQAEQASQQNSMANAAAGTLLGAAAGAALGAAAGNAGLGAAA
                     GAGTGLLLGSSAAGNQTQATANSLQASYDVAYAQCMVGNGQTIQQPVGMGYAGPGYYS
                     APPPPPGYYAPY"
     gene            complement(1219..>1724)
                     /locus_tag="VEQ16_04375"
     CDS             complement(1219..>1724)
                     /locus_tag="VEQ16_04375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008854556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DnaJ C-terminal domain-containing protein"
                     /protein_id="HYP63096.1"
                     /translation="REKTLAVQIPAGVEDGTRIRLSGEGEAGLRGAPAGDLYVHVSVR
                     PHELFQRDGANIFCRVPLRMTQASLGGEIEVPTIDGSASRVKIPAGTQSGDQFRLRNK
                     GFSVLRSTQRGDMYIQVAVETPQNLTRRQRELLEEFERESAGHKTGSPEHEGFFAKVK
                     DFFEGRA"
BASE COUNT          296 a          604 c          533 g          291 t
ORIGIN      
        1 gattctgcgg caggcccaga tttacctgcg cctgtggctg cgggggtggg ggcggcggcg
       61 cggtgggtgt ctgcgccggc tgcggcaggc cctggacgga tttgggcggc gcctcattct
      121 gctgctgccc gccatggtcg aacaccatcg acacgccgac aggcgcctcc tgcggcggcg
      181 gcaacggctc ctcccgcgta tagagcaaaa tggccagagc caggatatgc agaagaatcg
      241 cagcacccca ggcccaggga tgccagcctt tgcggtccgc cggctgggcg aaccgctcat
      301 ccgcggccag aattatatca ggcggctcag taaggggcgt agtagccggg aggtggcggg
      361 ggagccgaat aatagccggg ccctgcataa cccattccca caggctgctg aatcgtctgg
      421 ccatttccca ccatgcactg cgcataggct acgtcatagc tggcctggag agaattcgca
      481 gtagcctgcg tctgatttcc tgccgcggac gagcctaaca gcagcccggt gcccgcaccg
      541 gccgcggccc ccagcccggc attgcccgcc gcggcgccaa gggcggcacc ggccgcagca
      601 cccagcagcg tgcccgccgc cgcgttggcc atcgagttct gctgcgaggc ctgctccgcc
      661 tggcccggat agggcatgtg gctctgcgcg taatgccggc acatcgcgtc agcgtcttgg
      721 aactgctgcc atgtctgccc ctggcccggc atggccacca cgctcgggcc ggtcggcgtc
      781 gccgcggtac agccgcccag cgccataagg gagagcagcc cgaggctgag atagggtctt
      841 gtcattgttg gctccttgag cacgcacgga ctctgttgac cgagtctcag atgtaatcag
      901 ggctttaata gggcgcaacg gcggccagcg ggcacttaca attcgtattg atgcgtcacg
      961 tctggccttc acctcgacgc tatccagcgt gccaccgcgc gcagatggcg tgcaaggacg
     1021 cgcttcgcgc gccgccttcg gcggtggccc ttcgggccat ccttgacccc atatacgcgc
     1081 ggcggcttga ggatttcagg tcggaacgaa ggaacaggta cgccagtcga accaaggaac
     1141 cggtatttgt cacaccgtca tcgcgagcac agcgcggcga tccatcttcc gcgccacgtc
     1201 acgaaagctg gctcgtggct acgcccgccc ctcgaaaaaa tccttcacct tggcaaagaa
     1261 cccctcatgc tccgggctcc ccgtcttatg cccggcggat tcgcgctcga actcctccag
     1321 caattcccgt tggcggcgcg tcagattctg cggcgtctcc accgccacct gaatatacat
     1381 gtcgccacgc tgcgtgctgc gcagcacgga gaatcccttg ttccgaagcc ggaactggtc
     1441 acccgactgc gtgccggccg gaatcttcac ccgcgaggcg gagccatcaa tggtcggcac
     1501 ctcgatctcc ccgcctagcg aggcctgcgt catgcgcagt ggcacccggc agaaaatatt
     1561 cgcgccatcg cgttggaaca gctcatgcgg ccgcacggag acatgcacat acaaatcccc
     1621 cgccggcgcg ccgcgcaacc cggcctcgcc ctcgccggac aggcggatgc gcgtgccatc
     1681 ctccacgccc gccggaatct gcaccgccag cgtcttctca cgcg
//
LOCUS       DASQCV010000291         2751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_65799, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000291 DASQCV010000000
VERSION     DASQCV010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65799"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..818)
                     /locus_tag="VEQ16_04380"
     CDS             complement(<1..818)
                     /locus_tag="VEQ16_04380"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP63097.1"
                     /translation="MEGWRHFRSSTKNREFAFYRRRDLYTGSKNESVGESAITRKVAI
                     ITGAGSGVGHATAHTLAKENVAIVAVGRRAAPLEALKAELKDIAPVAVAAMDVTSDAA
                     PAAAAALAISEFGRLDYLVNNAGFGKPSPVHETSDELLDSVWSVLLRAPFRFCREALN
                     VMEDGGSIVNVASTFAVIGGLRGGMYSAAKAGLVGLTKHMAAQYGRRNIRTNVVAPGV
                     LETPMTEYAWETPRFRRMNFDMTPLARTGTAGDAAEAIAFLLSDKAKFITGQVL"
     gene            complement(1010..2167)
                     /locus_tag="VEQ16_04385"
     CDS             complement(1010..2167)
                     /locus_tag="VEQ16_04385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007435278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase N-terminal
                     domain-containing protein"
                     /protein_id="HYP63098.1"
                     /translation="MSSETAAAPANKYFPKITEQALDDLRSRIGVLITDTVEPWNYEA
                     TRDGIRHYAHGIGDDNPLWCDPAYAEKTSYGTILALPSFLFTTSRIISGYVGGLAGTH
                     AMWAGADWTWHKPVRRNDVISTEARLKDLIEHQTRFAGRSFQQIYNVKFYNQHGDLVA
                     DADSWCFRTDRDHAREVGTKYTEARARGVQKFTEEELQKYYQYYRDEEVRGATPRYFE
                     DVAVGEKLPTMLKGPMTVTGFIGYAQGWGGLYIRTNKIAWQMFDKHPGLGIKNRFGIP
                     DCPERVHWEEEFAHMVGAPGAYDYGPERCSWLTHHATNWMGDAGFLHKAKSQIRRHNP
                     EGDIILINGEVTRKYEENGKAYVEIAQQARTHNDELSASGVAVVQLPKRGA"
     gene            complement(2167..>2751)
                     /locus_tag="VEQ16_04390"
     CDS             complement(2167..>2751)
                     /locus_tag="VEQ16_04390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007435277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HYP63099.1"
                     /translation="MYGTTEIGVILVNYPGAPDYKVKDGSLGKPIPGMKIEIRAADGG
                     VCAPNVKGEIMLLRKGEWIPTKDLGWTDEDGYFYHGGRADDVIISAGWTISPVEIEQT
                     LLRHETVAEAAVIGVPDGLRGLAVKAFIVAKGGEKDEAHVKALQDFTRQQLSAHEYPR
                     IVEFVDQLIKTPAGKINRKALRDLEAKKISERTA"
BASE COUNT          498 a          903 c          799 g          551 t
ORIGIN      
        1 atcagcacct ggccggtgat gaatttggcc ttgtcggaca gcaggaaggc gatggcctcc
       61 gccgcatccc ccgccgtgcc ggtgcgcgcc agcggcgtca tgtcgaaatt catgcggcga
      121 aagcgcgggg tttcccaggc atattcggtc atcggcgttt ccagcacgcc cggcgccacc
      181 acattggtgc ggatgttacg ccgcccatac tgggccgcca tatgcttggt gagccccacc
      241 agcccggcct tggcggcgga atacatcccg ccacgcaagc caccgatgac ggcgaaggtg
      301 gaggccacat tcacgatcga cccgccatcc tccatcacat tcaacgcctc gcggcagaac
      361 cggaagggcg cgcggagcag cacgctccac accgaatcca gcagctcgtc gctggtttca
      421 tgcaccggcg agggcttgcc gaaaccggca ttattcacaa gataatcgag ccgcccgaat
      481 tccgagatgg cgagcgccgc agcggctgcc ggcgccgcgt cggacgtcac atccatggcg
      541 gccacggcca ccggcgcaat gtctttcagt tctgctttca gcgcctccag cggcgcggcg
      601 cggcggccga cagcaacgat ggcgacattc tccttggcga gcgtatgggc ggttgcatgc
      661 ccaacaccgg agccagcccc ggtgataatt gcgaccttcc tggtaatggc actctctcct
      721 acgctctcat tctttgagcc tgtgtatagg tcacgccgtc tatagaaggc aaattcccgg
      781 tttttcgtgc tggaccgaaa atgacgccac ccttccatcc gccagacggc accaaaaaac
      841 aaactctttc aatagattgc actcaaccct cggctcgcgc gcccaagccg ggcgcaggcc
      901 ccggaaccgg ccgccagcgc gacttgtgtg gacaaaaaaa cggcgccgaa aacggcgccg
      961 tctcctgaag gcttcgggca gaccggccac cggtccaacc ctgctcatgt cacgcaccgc
     1021 gcttgggcag ctgcaccact gccacgccgc tcgcggagag ttcgtcatta tgcgtccgcg
     1081 cctgctgcgc gatctccaca taagccttgc cattctcttc gtatttgcgg gtcacctcgc
     1141 cattgatgag gatgatgtcg ccttccgggt tatggcggcg gatctggctc ttcgccttgt
     1201 gcaggaagcc agcatcgccc atccagttgg tggcgtggtg cgtcagccag gagcagcgct
     1261 cggggccgta atcatacgcg cccggcgcgc cgaccatgtg cgcgaactcc tcttcccagt
     1321 gcacgcgctc cgggcagtcg gggatgccga aacggttctt gatgccgagg cccggatgct
     1381 tgtcgaacat ctgccaggca atcttgttgg tgcggatgta aagcccgccc cagccctggg
     1441 cgtaaccgat aaagccggtc accgtcatcg ggcccttcag catggtcggc agtttttcgc
     1501 ccaccgccac atcctcgaag taacgcggcg tggcgccacg cacctcttcg tcgcgataat
     1561 actggtagta tttctgcagc tcttcctcgg tgaatttctg cacgccgcgg gcgcgagcct
     1621 cggtgtattt cgtgcccacc tcgcgcgcat ggtcgcggtc ggtacggaag caccagctat
     1681 ccgcatcggc caccaggtca ccatgctggt tgtagaattt cacgttgtat atctgctgga
     1741 aggagcggcc cgcaaagcgc gtctggtgct caatcaggtc tttcagccgc gcctcggtgg
     1801 aaatcacgtc attgcggcgt accggcttgt gccaggtcca gtcggcgccg gcccacatgg
     1861 catgcgtgcc ggcgaggccg ccgacatagc cggagatgat gcggctcgtg gtgaagagga
     1921 agctcggcag cgccaggatg gtgccgtagc tggtcttctc ggcataggcc gggtcgcacc
     1981 aaagcgggtt gtcgtcaccg atgccatggg cgtaatggcg aattccgtcg cgcgtcgcct
     2041 catagttcca cggctccacc gtatcggtga tcagcacgcc gatgcggctg cgcagatcat
     2101 cgagcgcctg ctcggtaatc ttaggaaaat atttgttcgc cggcgcggcg gcggtctcac
     2161 tgctcattat gcggtcctct cagaaatttt cttggcctca aggtctctca acgctttgcg
     2221 gttgatcttc ccggccgggg tcttgatcag ctggtcgaca aattcaacga tgcgcggata
     2281 ttcatgggcg ctcagctgct ggcgcgtaaa atcctgcaac gccttcacat gcgcctcatc
     2341 cttttcgccg cctttcgcaa cgatgaaggc tttcaccgcc aaaccgcgca gcccgtccgg
     2401 cacgccgatg acggcggctt cggcaacggt ttcatggcgc agcaatgtct gctcgatttc
     2461 cacggggctg atggtccagc cggcagaaat gatcacatca tcggcgcggc cgccatggta
     2521 gaaataccca tcctcgtcgg tccagccgag atctttcgtg gggatccatt cgcccttgcg
     2581 cagcagcatg atctcgccct tcacattggg cgcgcatacg ccgccatcag cggcacggat
     2641 ttcgatcttc atgcccggaa tcggcttgcc gagcgaaccg tccttcacct tgtaatcagg
     2701 cgcgccggga taattcacca ggatcacacc aatctcggtg gtgccgtaca t
//
LOCUS       DASQCV010000292         1543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3050500, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000292 DASQCV010000000
VERSION     DASQCV010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3050500"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..192)
                     /locus_tag="VEQ16_04395"
     CDS             complement(<1..192)
                     /locus_tag="VEQ16_04395"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF012439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HYP63100.1"
                     /translation="MASVPGTYARAFADVVAEQHLDVARVLHELHVIGMLVKENDDLR
                     RVWENPSIPGEQKRRVVDAL"
     gene            complement(193..783)
                     /locus_tag="VEQ16_04400"
     CDS             complement(193..783)
                     /locus_tag="VEQ16_04400"
                     /inference="COORDINATES: protein motif:HMM:NF012645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit B"
                     /protein_id="HYP63101.1"
                     /translation="MGGQLAKETKEVDSKEHLMKSPSVEWIAHHTGLSVEGAYWLSVV
                     LNFVVIFGAIFWAARKYLPGMFRVRTAGIQRAMEEARRASEDANRRLADIESRLAKLG
                     DEINGMKATAEKDMVEEEVRLKAAAEADARKIVESAEQEIAAAAKAARRDLTAYAADL
                     ALALAKRQIHVDGGTDESLVRSFADSLGKPAEGNKN"
     gene            complement(957..1430)
                     /locus_tag="VEQ16_04405"
     CDS             complement(957..1430)
                     /locus_tag="VEQ16_04405"
                     /inference="COORDINATES: protein motif:HMM:NF012645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63102.1"
                     /translation="MHEMLKQLGELLLGSVPTALMLIFLWTMYSILVHKPLAKVLAER
                     RAKTEGAIEKARADVAAAEARTGEYEQRLREARAAVFQSQEARRKAAMDARAAAVAAA
                     RAKAREQIETAKLAMEQDKVAAQASLRAESAQLATEMIGRVLRPVDAQSPMGGAR"
BASE COUNT          272 a          551 c          408 g          312 t
ORIGIN      
        1 cagcgcatcc accacccgcc gcttctgttc gccggggatc gaaggattct cccaaacgcg
       61 ccgcagatcg tcgttctctt tcacgagcat ccctatcacg tgcaactcgt gcaggacgcg
      121 cgcaacatcc aggtgctgct cagcgaccac gtcagcaaaa gcgcgcgcgt aggttcccgg
      181 cacagaagcc atctaattct tgttcccttc cgcaggcttg cccaggctat ccgcaaaact
      241 gcgcaccaag ctctcgtccg tgccgccatc cacatgaatc tgccgcttgg ccagcgcaag
      301 tgccagatcc gccgcgtatg ccgtcaggtc gcggcgcgcc gcctttgccg ccgctgcgat
      361 ttcctgttcc gccgactcca caatcttacg tgcgtcggcc tcagcagcgg ctttgaggcg
      421 tacctcttcc tccaccatat ctttttcggc ggtggccttc atgccgttga tctcatcgcc
      481 cagcttcgcc agccgtgact caatatcggc aagccggcga ttcgcgtcct cgctcgcccg
      541 ccgcgcttct tccatcgccc tctggatccc cgctgtgcgg acgcggaaca tgccgggcag
      601 atatttgcgc gccgcccaga aaatcgcgcc gaagatcacc acgaagttta gaacgaccga
      661 cagccagtac gcaccttcaa cgctcagccc agtgtggtgc gcgatccact ccaccgaggg
      721 cgacttcatc agatgctcct tgctgtcgac ttccttggtc tctttggcaa gctgcccgcc
      781 caagccagga tgctccggcg atggttgagc ttctgaagtc ggagactggg gcagattctg
      841 atccgggccg cctccctgcc caaaagctac gagaccgaga ataaacacca ggagggtcag
      901 ggccacccaa ctcgcccgca ggcgttttcg agggccgcca gtcgttgccc gcccgatcat
      961 cgcgcccctc ccattggact ctgcgcatcc accggacgca gcacgcgccc aatcatctca
     1021 gtcgccagct gcgccgattc ggcccgcaag ctggcctgcg ctgcaacctt atcttgctcc
     1081 atggccagct tcgcggtctc aatctgttcc cgagctttgg cccgagctgc cgcaactgcc
     1141 gccgcgcgcg catccatcgc cgctttgcgt cgcgcttcct ggctctggaa aaccgccgcc
     1201 cgcgcctctc gcagccgctg ctcgtactca cccgtgcgcg cctcggccgc agccacatcc
     1261 gcgcgcgctt tctcgattgc accctcagtc ttcgcccgcc gctcggccag cactttggcc
     1321 agcggcttgt ggaccaagat cgaatacatg gtccacaaaa aaatcagcat cagggccgtg
     1381 ggtacggacc cgagcagtaa ttcgcctagc tgtttgagca tctcgtgcat tgggtgctga
     1441 ttaaaccggg atccgtctag ccggagaaag agggctatga aacccttaaa ggtagcatcc
     1501 tgttgggttt atgtcaacgg aaagggcgtt ttgccggctc gag
//
LOCUS       DASQCV010000293         3513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2221665, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000293 DASQCV010000000
VERSION     DASQCV010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3513
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2221665"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            298..2019
                     /locus_tag="VEQ16_04410"
     CDS             298..2019
                     /locus_tag="VEQ16_04410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63103.1"
                     /translation="MTGASKLFIVAAAILAMVVARPVEAGHEGGGGHGGGGWQGGGAW
                     HGGGGWHEGGGWHDNGRHLGWYKRGWGAAGWGGTFASAQFGHGWGGPGFGGRDMGWWD
                     WRHAWGWNDFGWGWGAGAWAWGGLLLGASFGVIIAPPLIVAPPPIYIAPPPIVLGLPA
                     IAPPPIAAGPPPPAALPPVATAPPPPTGALLGAVLPPPVVVLPPPAIVVAAAPPLVVF
                     TPPAFGLFIGPPVLAFATIGPGWWHGGFITGGFGTFGATAAVMHFGHRGFAGGPVGFH
                     GRLGGPSRWAWGGGWHGGWGGRGFGGWHGGWGGRGFGGWHGGPGWRGTFASAQFGHGW
                     GGPGFAGRGLGWWDWRHAWAWNDFGWGWGAGAWAWGGLLVGASFGVIVAPPLIVAPPP
                     IYIAPPPIVLGLPAIAPPPIAAGPPPPVAPPPVAAAPPPTGALLGAALPPPVMVLPSP
                     EIVVAAAPPLVVFTPPAFGLFIGLAFATIEPGWWHGGFITGGFGAVGATAAIAHFGHR
                     GFAGEPVGFHGRLGGTSRWAWGGGWYGGWGGRGWHGGGFGGWHGGGGWHEARMGGGFG
                     GGHGRWR"
     gene            2031..2540
                     /locus_tag="VEQ16_04415"
     CDS             2031..2540
                     /locus_tag="VEQ16_04415"
                     /inference="COORDINATES: protein motif:HMM:NF019430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HYP63104.1"
                     /translation="MFGSFLARGVALAVFLAPSIGLAQSTAPLPPTAAPPASAAPAAA
                     PPSSTPAPSAATQAATDQRIKMLQSQLGITKAQMPLWSAFTQAMRDNAAATDALFTQR
                     AGAVATMNAADNMHSYAQIARAYADNTERLATAFDSLYASLSDTQKQAADTLFRQQAT
                     PAAQPRARR"
     gene            2637..3269
                     /locus_tag="VEQ16_04420"
     CDS             2637..3269
                     /locus_tag="VEQ16_04420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63105.1"
                     /translation="MAKGILVAAMDFSAAPEDEFHDWYDLEHVPERLRVSGFLNGDRW
                     IGATNPKISVATYDLENVDVLKSPPYLAVGGENSSPWTKRTARFRKSLMRYEGEQLFP
                     GDRTAPSEAAALLVIAMNISPEHESDFNEWYNKEHVPALGAVPGTLCARRYRGAGATQ
                     RYVALYHFTSPEVPSSAEWRKAADTPWTQRLRPHFRDMVWFDRRRYNRAR"
     gene            3271..3411
                     /locus_tag="VEQ16_04425"
     CDS             3271..3411
                     /locus_tag="VEQ16_04425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63106.1"
                     /translation="MDIGFTEEQELQLYIERAKASEVAFGDATWHRERAAWLMTAQLR
                     GE"
BASE COUNT          492 a         1152 c         1212 g          657 t
ORIGIN      
        1 agcagcacct tcatgtcgat ccccgaacaa ggggttggct tccacggcag gctctcgact
       61 tcgacatagc gtgacgccag cgggccgagc ttctcggcct tttccaaaaa cggagtagtg
      121 gcagtcatcg gcttcctcca aggatttgtc gtcgatcata gcggaaaatc cggttactaa
      181 cgctatcttg acgttttttg gattcatccg cctcgggcgg atgtggcgta caatgacgga
      241 atggtagtcg gcattcctgc gttctgccat gcgagcagcc tgtacggata atcgtcgatg
      301 acgggtgcat ccaaactatt catcgtcgcg gcagccatcc tggcgatggt ggtcgcgcgc
      361 ccggtcgaag cggggcatga agggggaggc gggcacggcg ggggaggctg gcagggcggc
      421 ggcgcctggc atgggggtgg cggctggcac gaaggcggtg gctggcacga caatggtcgg
      481 catctcggct ggtacaagcg cgggtggggt gctgccggtt ggggcgggac cttcgcctct
      541 gcgcaattcg ggcatggctg gggtgggccc gggttcggcg gtcgcgacat gggctggtgg
      601 gattggcgcc acgcctgggg ctggaatgat ttcggttggg gatggggcgc aggcgcttgg
      661 gcgtggggcg gtctgctgct gggcgcgtcg ttcggcgtaa tcatcgctcc gccgctgatc
      721 gtggcacccc cgccgatcta catagcgcca ccaccgatcg tgctcggact tccggcgatc
      781 gctccgccgc cgatcgcggc aggccccccg ccgccagcag ctcttcctcc cgtggcaacg
      841 gccccgccgc cgcctaccgg cgcgttgctc ggcgcggtat tgccaccacc ggtcgtggtg
      901 ctgccaccgc ccgcgatcgt tgtcgccgcc gcaccgccgc tcgtcgtctt tacgccgcct
      961 gccttcgggc tctttatcgg tcctcccgtt ctggctttcg cgaccatcgg accgggctgg
     1021 tggcacggcg gcttcatcac tggtggcttt ggcaccttcg gagcaacggc ggcggtaatg
     1081 catttcggcc accggggttt tgccggcggg cctgtgggct tccatggccg actgggaggc
     1141 ccgtcccggt gggcctgggg cggcggttgg catggcggct ggggcggccg cggctttggc
     1201 ggttggcatg gcggatgggg cggccgcggc tttggcggct ggcatggtgg cccgggatgg
     1261 cgaggaacct ttgcctctgc gcaattcggg catggctggg gtgggcccgg gtttgctggt
     1321 cgcggcttag gctggtggga ttggcgccac gcatgggctt ggaacgattt cggttggggg
     1381 tggggcgcag gcgcctgggc gtggggcggt ctgctagtgg gcgcgtcgtt cggcgtaatc
     1441 gtcgctccgc cgctgatcgt ggcacctccg ccgatctaca tagcgccacc accgatcgtg
     1501 ctcggacttc cggcgatcgc tccgccgccg atcgcggcag gccccccgcc accagtagct
     1561 cctcctcccg tggccgcggc cccgccgcct accggcgcgt tgctcggcgc ggcattgccg
     1621 ccaccggtca tggtgctgcc atcgcctgag atcgttgtcg ccgcggcgcc gccgctcgtc
     1681 gtctttacgc cgcctgcctt cgggctcttt atcggtctgg ctttcgcgac gatcgaaccg
     1741 ggctggtggc acggcggctt catcaccggt ggctttggcg ccgtcggagc aacggcagcg
     1801 atagcgcatt tcggccaccg gggttttgcc ggcgagcctg tgggcttcca tggccgactg
     1861 ggaggcacgt cccggtgggc ctggggcggc ggttggtatg gcggatgggg cggccgcggc
     1921 tggcacggcg gcggctttgg cggctggcac ggcggtgggg gctggcacga ggcccggatg
     1981 ggcggcggct tcggtggcgg ccacggccgg tggcgctgag gaaaatagat atgttcggct
     2041 cattccttgc acgtggtgtc gctctggcgg tcttcctggc gccctccatc gggctcgcgc
     2101 aatcgacagc tcctctccct ccgacggccg cgcccccggc ttcggcagcc cctgcggctg
     2161 cgcctccatc gagcacgccc gcgccctccg ccgcaaccca agccgccacg gatcagcgga
     2221 ttaaaatgct gcagtcacag ctcggcatca ccaaggcgca gatgcctctc tggtccgcct
     2281 ttactcaggc catgcgcgac aacgcggcag ccacggatgc gctcttcacg cagcgcgccg
     2341 gcgccgtggc gacaatgaac gcggccgaca acatgcattc ctacgcccag atcgctcgcg
     2401 cctacgccga caacaccgag cgcctggcga ccgctttcga ctctctttat gcgagcctct
     2461 cggacaccca gaagcaggcc gccgacacgc tgttccgtca gcaggcaaca cccgccgccc
     2521 agccgcgcgc ccggcgctga cgcgcctcac ccagcgattc ccgatcgctg cggcgagttt
     2581 cgctggaaac cgcggcgggt ctcggcgatg atgccccaaa tccttgggag ggaccaatgg
     2641 caaagggcat cctggtcgcg gcaatggatt tctcagccgc ccctgaagac gaatttcacg
     2701 actggtacga tctcgagcac gtcccggagc ggctgagggt atccggtttt ctaaacggtg
     2761 atcgctggat cggtgcgacg aacccgaaga tctcggttgc gacctatgat ctcgaaaatg
     2821 tcgacgtgct gaagagccca ccctatctgg cggtaggagg cgagaattcc tcgccttgga
     2881 caaagcgcac cgctcgcttc cgcaagagtc tgatgcgcta cgagggggag cagctttttc
     2941 ccggcgaccg aacggcgccc tcggaggccg ccgcactgtt ggtcatcgcg atgaacatct
     3001 ccccagagca cgagagcgac ttcaacgagt ggtacaacaa ggagcacgtc ccggcgctcg
     3061 gcgcggtgcc cggcaccttg tgcgcgcgcc gctaccgcgg cgctggtgcc acccagcgtt
     3121 acgtcgcact ctaccatttt acttcacctg aggtgccgag ctccgccgaa tggcgtaagg
     3181 ccgccgatac gccgtggacg cagcgtctgc ggccgcattt ccgcgacatg gtgtggttcg
     3241 accgccgccg gtacaaccgc gcccgataat atggatatcg ggtttaccga agagcaggag
     3301 ctgcagctct atatcgagcg cgccaaggcc tccgaggtcg ccttcggcga cgccacttgg
     3361 caccgcgagc gcgccgcttg gctgatgacc gcgcagctgc gcggcgagtg aatgcggggc
     3421 attcggcaga acaatttcga tgcgctgcgt ctggtcgccg ccgtctcggt cgtcttctcg
     3481 cattccttcc tgatcgccga gggcgcacag gac
//
LOCUS       DASQCV010000294         2435 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2386756, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000294 DASQCV010000000
VERSION     DASQCV010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2386756"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1157)
                     /locus_tag="VEQ16_04430"
     CDS             complement(<1..1157)
                     /locus_tag="VEQ16_04430"
                     /inference="COORDINATES: protein motif:HMM:TIGR01843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HYP63107.1"
                     /translation="MSGTSPPLPLASTPARLRSLLKLVPDGADERAFLPAALEIIETP
                     ASPVGRAIAGLIAAAAVTAVIWASLAKIDIIATAPGRIIPVGQTKIMQPFQAGIVQAI
                     DVADGDHVVAGQALIILDPTSAEADARRVSQDLLSLELDRARLEGLRAVLASGAAPVL
                     LDVPANATREEIDAANAQMQAQALEEAGKIADIDQQIAEKRSEAQQAVASIAKVETDK
                     PYLSQVAGMRTTLLHDAVGSKLDWLTAQQQLADTGPEIAQAQAQQQAALASVAALQQQ
                     RAETQGEYATGIYDDLDQTDQKIGESSQDLVKAQQAVTLTTLRAPISGTVQQLMVHTI
                     GGIVTPAQALLTIVPDDQQLMVEASIQNQDIGFVHVGQEAEVKIAAFDFTR"
     gene            complement(1154..>2435)
                     /locus_tag="VEQ16_04435"
     CDS             complement(1154..>2435)
                     /locus_tag="VEQ16_04435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012975662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP63108.1"
                     /translation="MAWYSLWLTLVVVASLPLYAVLSAAVTPLFRARLNEKFRRGAEN
                     QAFLVEAVGGVETLKAMAVEPQMQRRWEEQLAGYVTASFRVQNLANYASQAIQFVSKL
                     VTASVLFFGAKLVMDNQMTVGELVAFNMFAQRVSQPVLRLAQIWQDFHQARISVDRLG
                     DVLNAAPEPQATPGRAVLPPIKGAIRFDHVGFRYRLDGPEILRGVSLDIDAGQVVGVV
                     GPSGSGKSTIAKLLQRLYVPETGRVLIDGIDLVMTDPAWLRRQIGVVLQENLLFNRSV
                     RENIALADPGMSLERVIEAAKLAGAHEFILQLPEGYDTIVGERGGTLSGGQRQRIAIA
                     RALVGNPRILIFDEATSALDYESESAIQANMRRICRGRTVIIIAHRLSTVRSADRIIT
                     IEAGRVVEDGTHDELVLRGGRYAMLHKLQSGVAA"
BASE COUNT          434 a          855 c          719 g          427 t
ORIGIN      
        1 taccgtgtaa aatcgaacgc ggcgattttc acctcagctt cctgccccac atgcacgaag
       61 ccgatatcct gattctggat gctcgcctcg accatcagct gctgatcgtc cggcacgatg
      121 gtcagcagcg cctgcgccgg tgtcacgatc ccgccgatcg tatgcaccat cagttgctgc
      181 actgtcccag agatcggcgc tcgcaaggtc gtcagcgtca ccgcctgctg ggccttcacc
      241 agatcctggc ttgactctcc gattttttgg tccgtctgat cgagatcatc atagatcccg
      301 gtggcatatt ccccttgcgt ctccgcccgc tgctgctgca gcgccgccac gctggccaac
      361 gccgcctgct gttgcgcctg agcctgcgcg atctccgggc cggtatcggc cagctgctgc
      421 tgggcggtca gccagtcgag cttgctgccc accgcatcat gcagcagcgt cgtgcgcatg
      481 cctgcgacct gggagagata cggcttgtcc gtctccacct tggcgattga cgccaccgcc
      541 tgctgcgcct cggagcgctt ctccgcaatc tgctggtcga tatccgcgat tttgcccgcc
      601 tcttccaacg cctgcgcctg catctgcgca ttggcggcgt cgatctcttc gcgcgtggca
      661 ttggccggca catccagcag cacgggcgca gccccgctcg ccagcacggc gcgcaagccc
      721 tccaggcggg cgcggtccag ctccaggctc aacagatcct gcgagacacg ccgggcatcc
      781 gcctcggccg atgtcgggtc caagataata agagcctgcc cggccaccac atggtcacca
      841 tccgctacgt caatggcctg aacaatgccg gcctggaagg gctgcatgat cttggtctgg
      901 cccacaggga taatacgtcc tggcgcggtg gcgatgatgt cgatcttggc aagactggcc
      961 cagattaccg ccgttaccgc tgcggcggcg atgagcccgg caatggcccg ccccaccggc
     1021 gaggcgggcg tctcgatgat ctccagcgcc gcgggcagga aggcccgctc atccgcgcca
     1081 tccggcacca gtttcagtag cgaccgcaac ctggccgggg tggaggccaa cggcaagggg
     1141 ggagatgtgc cgctcatgcc gcgacgcccg attgtaactt atgcagcatg gcatagcgcc
     1201 cgccgcgcag caccaactca tcatgcgtgc catcctcaac cacccgtccg gcctcgatgg
     1261 tgatgatgcg gtcagcgctg cgcaccgtac ttaggcgatg ggcgatgatg atcaccgtcc
     1321 gcccccggca gatgcggcgc atattggcct ggatggcact ctcactctca taatcaagcg
     1381 cactggtcgc ctcgtcgaag atgaggatgc gcggattccc gaccagggct cgggcaatgg
     1441 caatgcgctg gcgctggcca ccggacaatg tgccgccacg ttccccgacg atggtgtcat
     1501 acccctccgg gagctgcagg atgaactcat gcgccccggc cagcttagct gcctcgatga
     1561 cccgctccag cgacatgccc ggatcggcca gggcgatatt ctcccgtaca gagcggttga
     1621 acagcaggtt ttcctgcagc accacgccga tctgccggcg cagccaggcc gggtcggtca
     1681 tgacgagatc gatgccatcg atcagcaccc gccccgtctc cggcacatag agacgctgca
     1741 gcagcttcgc gattgtggac ttgccggacc cggaggggcc gacgaccccg accacttggc
     1801 ctgcatcgat gtccaaactc acgccccgca ggatttccgg gccatccagg cggtagcgga
     1861 agccgacatg gtcgaagcgg atagcgccct tgatcggcgg cagcacggcc cgccctggcg
     1921 ttgcctgcgg ctccggggcg gcattcagca catcccccag ccggtcaacc gagatccgcg
     1981 cctgatggaa atcctgccag atctgggcca agcgcaacac aggctgggag acacgctggg
     2041 cgaacatatt gaacgccacc agttcgccga ccgtcatctg gttatccatg accagcttgg
     2101 ccccgaagaa cagcaccgag gccgtcacca gcttgctcac gaactggatc gcctggctgg
     2161 cataattggc caggttctgc acccggaagg aagccgtcac atagcccgcc agctgctctt
     2221 cccagcggcg ctgcatctgc ggctccacag ccatggcctt cagcgtctcc acgccgccga
     2281 ccgcttcgac taggaacgcc tgattctccg ccccgcggcg gaacttttcg ttcaggcgtg
     2341 cgcggaacag aggcgtgacg gcagcactca acacggcata aagcggcagg gacgcgacca
     2401 ccaccagggt cagccacagc gaataccagg ccatc
//
LOCUS       DASQCV010000295         2222 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_229944, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000295 DASQCV010000000
VERSION     DASQCV010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2222)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2222)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2222
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229944"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..823
                     /locus_tag="VEQ16_04440"
     CDS             <1..823
                     /locus_tag="VEQ16_04440"
                     /inference="COORDINATES: protein motif:HMM:NF024039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HYP63109.1"
                     /translation="SHHEDFGLLYGRQFPANSHGLVGDIALAAPTIGMALRQFADLFP
                     LHQEASEVKLVAENGLLRLEYRILDWRIFNRRQDAELSLAMFQNLLRQAYGPNFAPEE
                     VHFEHPAPGGKAAHEATFHAPVFFGQRTNALLFRPGDLRKPMPGADTGAFSHLAAEAF
                     IRRLPQGRVPLPERVRAEIRSRLPEGSPPMEEVADALGLARWTLQRRLGELGLTYAES
                     VQEVRKTLAESYLSQPHLSISAIAQLLGYAELSPFSRACKRWFGTSPETIRARAA"
     gene            complement(1092..1514)
                     /gene="ndk"
                     /locus_tag="VEQ16_04445"
     CDS             complement(1092..1514)
                     /gene="ndk"
                     /locus_tag="VEQ16_04445"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HYP63110.1"
                     /translation="MAIERTLSIIKPDATRRNLTGKINTKFEENGLMIAATKRLHLTK
                     AQAEAFYAVHSHRPFFGDLVSFMISGPVVAQVLYGEDAIAKNRDIMGATNPANAAAGT
                     IRAEFAESIEANSVHGSDSAEAAAQEISFFFAEIEIVA"
     gene            1640..>2222
                     /locus_tag="VEQ16_04450"
     CDS             1640..>2222
                     /locus_tag="VEQ16_04450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014457165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP63111.1"
                     /translation="MSVLSIEDLSYSIAGRPLLEHAGLMVEAGRRVGLIGRNGAGKST
                     LLKLIAGAMRPDGGSIKLGQRARLGYVAQEAPGGDITPLDVVLAADTERADLLAAAED
                     HATPAERLGEIHDRLLAISADSAPARAAAILAGLGFNEEWQARPMRSYSGGWRMRVAL
                     AAVLFSAPDLLLLDEPTNHLDLEATLWLETYLQK"
BASE COUNT          359 a          784 c          693 g          386 t
ORIGIN      
        1 ctcccatcat gaggatttcg gcctgctcta tggccgccag ttccccgcca attcccacgg
       61 cctggtggga gatatcgccc tcgccgcccc caccatcggc atggccctgc gccagttcgc
      121 cgacctcttc ccgctgcacc aggaagccag cgaggtgaaa ctcgtcgccg aaaacggcct
      181 cctgcggctg gaataccgca tcctggactg gcgcatcttc aaccgccgcc aggacgccga
      241 actctccctc gccatgttcc agaacctgct gcgccaggcc tacggaccaa atttcgcccc
      301 ggaagaagtg catttcgagc accccgcacc tggcgggaaa gccgcccacg aagccacctt
      361 ccacgccccg gtcttcttcg gccagcgcac caacgccctg ctcttccgcc ctggcgacct
      421 gcgcaaacca atgcccggcg ctgacactgg cgccttctcg cacctcgccg ccgaagcctt
      481 catacgccgc ctgccccagg gccgcgtgcc cctgccggaa cgcgtgcgcg ccgaaatccg
      541 ctcacgcctg cccgaaggct cgccccccat ggaagaagtc gccgacgccc tcggcctcgc
      601 ccgctggacc ctgcaacgcc gcctcggcga acttggcctc acctacgccg aatccgtcca
      661 ggaagtacgc aaaaccctgg ccgaatccta cctcagccag ccccacctct ccatctctgc
      721 catcgcccaa ctcctcggct acgccgaact cagccccttc tcccgcgcct gcaaacgttg
      781 gttcggcacc tcgcccgaaa ccatccgcgc ccgtgccgcg tagcggcagg ggctttgccc
      841 cagacccgac cagggctccg ccctggaccc gccggggcct gaggccccgg acccccatta
      901 gctttttggt ggattgacga gagatgggcc ttacttggcc ccgcgaatgg atgggctaag
      961 cccgtccgtc cgcggggcca agtaaggccc ctctctcgtc aatccaaaag ttaaggggtc
     1021 tggggcctac ggccccagcg gggtccaggg gcggagcccc tggtggggtg caggggcaaa
     1081 gccccctgcc cttacgccac gatctcgatt tcggcgaaga agaagctgat ttcctgggca
     1141 gcggcttcgg cggagtccga gccatgcacg gagttggctt cgatggattc ggcgaattcg
     1201 gcgcggatgg tgccggcggc ggcgttggcc gggttggtgg cgcccatgat gtcacggttc
     1261 ttggcaatgg catcttcgcc gtacagcacc tgggcgacga cggggccgga gatcatgaag
     1321 ctgacgaggt caccgaagaa ggggcggtgc gagtgcacgg cgtagaacgc ctcggcctgg
     1381 gccttggtca ggtgcagccg cttggtggcg gcgatcatca ggccgttctc ttcgaacttg
     1441 gtgttgatct tgccggtgag gttgcggcgg gtggcgtcgg gcttgatgat ggagagggtg
     1501 cgttcgatgg ccatgactat atctttcccg tgtgaatgtt gcgccgccat tagcggggcc
     1561 tagcaggctg ggcaagcccc cctggcctgg gcaaagccca ggctgggcaa gccttacgcc
     1621 acaggataga gcaggcttta tgagcgtttt gagcatagaa gacctgtcct actccattgc
     1681 cggccggccg ctgctggaac atgccgggct gatggtggag gccggccgcc gtgtcgggct
     1741 gatcggccgc aatggcgcgg gcaaatccac cttgctcaag ctcattgccg gcgccatgcg
     1801 gcctgatggc gggtccatca aattgggcca gcgggcgcgt ctgggctatg tggcgcagga
     1861 ggcgccgggc ggcgacatca caccgctgga cgtggtgctg gccgccgata ccgagcgtgc
     1921 ggacctgctg gcagcggccg aagaccatgc caccccggcc gagcgcctgg gcgaaatcca
     1981 tgaccgcctg ctggccatca gcgctgattc cgcgcccgcc cgcgccgccg ccatattggc
     2041 cgggcttggc ttcaacgagg aatggcaggc ccgccccatg cgctcttatt ccggcggctg
     2101 gcgcatgcgc gtggcgctgg cggcggtgct gttttccgca cccgatctgc tgctcctgga
     2161 cgagcccacc aaccatctcg atctcgaagc cacgctctgg ctcgagacgt acttgcagaa
     2221 at
//
LOCUS       DASQCV010000296         1996 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2718599, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000296 DASQCV010000000
VERSION     DASQCV010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2718599"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1834
                     /locus_tag="VEQ16_04455"
     CDS             <1..1834
                     /locus_tag="VEQ16_04455"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP63112.1"
                     /translation="LWDPTTEGFSAPGVENFWGRRIQQEGLPVLSHADRLGYAALHLL
                     RHLFRGNPRPYHIYEIAYFLDTHSGDHSFWNSWRETHPPALRRLEAIAFRLARAWFGC
                     RLAAAMAEAIDELDAGIQLWFEHYAGAPLEAQFHPNKHEIWLQFELLDSPRDRARLFV
                     RRLLPATLPVAAANVYVPEDQLTWRMRLRGALKYAGHVIDRTWFHIRALPPVIAHGLI
                     WKSRSSRLPAQFWRLLGCSLLYFLGMYQFALLYNLHLLDLGYRENVLGLVASAFTAGC
                     FAGVLPAAAVSDRYGLKQTLLFGIAGSAAAFALRAVVHGEPALLATAFAGGALFSLWS
                     VVLTPAIAAVTPESARPAAYSFSIGSGIALGMAAAVLGGRLPGWFNHAGLGSSAAQSK
                     QFVLLAGSISTALALWPLRRLLIESPPSPETLSYPRGPFIRRFLLAVGVWNFATGAFN
                     PLFNAFFARSFRMPVEHIGMVFSFAQAAQVIAIFFAPLVLRRLGLTRGVAVMQLATAL
                     ILALLAPTQVALIAAVLYTSYMSFQYMSEPGIYSSLMNRVLPGQRSGASALNYLVLFG
                     GQTLAATLSGTVVARYGYPSMLTGAALLAAVAAWLFWRLPQEKQ"
BASE COUNT          310 a          661 c          575 g          450 t
ORIGIN      
        1 tctctgggat ccgaccaccg aaggcttctc cgcccctggc gttgagaact tctgggggcg
       61 ccgcatccag caggagggct taccggtcct tagccacgcc gaccgcctgg ggtacgctgc
      121 attgcacctg ctgcggcacc tttttcgcgg caacccgcgg ccttatcaca tctacgagat
      181 cgcttacttc ctcgacacgc attcgggaga tcattcgttc tggaattcgt ggcgtgaaac
      241 tcatccgcca gcgctccgcc gtctggaagc gattgcattt cggctggcga gggcatggtt
      301 cggctgtcgt cttgcagcgg ctatggccga agcgattgac gagctggatg ccggcatcca
      361 gctttggttc gagcattacg ccggcgcgcc gcttgaggca cagttccacc ccaacaaaca
      421 cgagatctgg ctgcaattcg agctgctgga ttctccgcgt gatcgcgccc gcttgtttgt
      481 gcgccgcttg cttccggcca cgctgcccgt cgccgccgcc aacgtgtacg tgccggaaga
      541 tcagctcacc tggcggatgc ggctgcgcgg tgcgctcaaa tacgcgggcc atgtcatcga
      601 tcgcacttgg ttccacatcc gcgccttgcc gccggtgatc gctcatggcc tcatctggaa
      661 atcccgtagc tcgcgcttgc cggcccagtt ctggcgattg ctcgggtgca gcctgcttta
      721 tttcctgggg atgtaccagt ttgctctgct gtacaacttg catctgctgg acctgggcta
      781 tcgcgagaat gtgcttggct tagtcgcgag cgcgttcacc gctggatgtt tcgcgggcgt
      841 gctgccggcg gccgccgttt ccgatcgtta cgggctaaaa caaacgttac tgtttggaat
      901 cgccggtagc gcggccgcat ttgcgctccg tgccgttgtg cacggcgagc cagcgctgct
      961 cgccacagcg ttcgccggtg gagcgctgtt ttccctgtgg agtgtggtgc tcaccccggc
     1021 gattgctgcc gtgacccccg agagcgcccg accggccgct tacagcttca gcattggttc
     1081 cggcatcgct ctcggcatgg ccgccgctgt tctgggcggc cggctaccgg gttggtttaa
     1141 ccatgccggt ctgggatcct cggccgccca atccaaacag ttcgtgctgc tcgccgggag
     1201 catctcgacc gccctggcgc tctggccgct gcgccgcctg ctaatcgaat cgcccccctc
     1261 tccagaaaca ctcagttatc cgcgcggccc cttcatccgc cgctttcttc tggcagttgg
     1321 cgtttggaac tttgcaaccg gcgcgttcaa tccgctgttc aacgccttct tcgcgcgctc
     1381 atttcgcatg cccgtagaac atatcgggat ggtattctca ttcgcccaag ccgcgcaggt
     1441 gattgctatc tttttcgcac ctctggtgct gcggcgcctg ggtttgacgc gcggagtggc
     1501 agtcatgcag ttagccacgg ccctcatcct ggccttgctc gctcccactc aagtcgccct
     1561 catcgccgcc gtgctttaca cctcttacat gagctttcaa tacatgagcg agcccggaat
     1621 ctacagctct ctgatgaacc gggtcttacc cggccagcgc agcggtgctt ccgcgctaaa
     1681 ctatctcgtg ctatttggcg gccagacact cgcggcaacg ctttcgggca ccgtagtcgc
     1741 ccgttacggc tacccgtcaa tgctgaccgg cgcggccctg ctggcggccg tcgcagcgtg
     1801 gctattctgg cgtttgcccc aagaaaagca gtaggataga aggcaattct cgtgaaatac
     1861 ctcctcgcca agacagaccc cggaacctac tccatcgacc agttcgagcg tgaaaagaaa
     1921 accgtgtcgg atggcgtaca ggacccgcga gccttgcgcg ccatcagtga aatgcggccc
     1981 ggcgaccgcg tgtttc
//
LOCUS       DASQCV010000297         1777 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2884992, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000297 DASQCV010000000
VERSION     DASQCV010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2884992"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..380
                     /locus_tag="VEQ16_04460"
     CDS             <1..380
                     /locus_tag="VEQ16_04460"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HYP63113.1"
                     /translation="STVYDAIDEMSKRHIGSLVVLSGGKLAGIVTERDYARKVILQGR
                     HSKETLVREIMSSPVLFVTPETSAGECMHLMTERRIRHLPVMEGDRVAAMISIGDLVN
                     WLVTSQQHTIHHLTGYITGKYPA"
     gene            complement(358..1626)
                     /locus_tag="VEQ16_04465"
     CDS             complement(358..1626)
                     /locus_tag="VEQ16_04465"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HYP63114.1"
                     /translation="MAATAAPAATEHFWIEQAPLYLTAAAAVATEVSIAASQILMGLA
                     LVAIIAGRVKLRWPPATVPLAAWMGWTLVSAAAHGDLRHGLPQIKKFYVYLMLFLVVS
                     AIRGIREIRGVALGWALAASASAAWSLEQFARKYQAARAAHVNFYTAYVGSRITGFMD
                     HWMTFSGQMMMALLLILALLLFAQDKRGRPWLIAAGCLTAVALLAAETRSMWGGAAVG
                     AAYLVWLKRRWLILAFPLAIGLVIVANPFMLRERIVSIVRPHGEMDSNEHRALLRRVG
                     WEMIKAHPLLGLGPEQVGPNFARYLPSDAPKPLPSGYYEHLHNIYFHYAAERGLPALA
                     ALLWFFGRALYDFARALRRLAPGSEARWLLHGVIAVIVAFLLGGYFEVNWGDSEVLGM
                     FLAVVGCGYSALADPTLKLADPTLKLDTSR"
BASE COUNT          388 a          591 c          515 g          283 t
ORIGIN      
        1 attccaccgt gtacgacgcc atcgatgaga tgtcgaaacg gcacattggc tcgcttgtgg
       61 ttctgagcgg cggtaagctc gccggcatcg tcaccgagcg tgactacgcg cgcaaagtca
      121 tccttcaggg ccggcactcg aaggaaacct tggttcgcga gatcatgagc tcgcctgtgc
      181 ttttcgtcac gccggagacc agcgccggcg aatgcatgca cctgatgacc gagcggcgca
      241 tacgccacct tcctgtcatg gaaggcgacc gcgtcgcggc tatgatctcg atcggcgatc
      301 tggtgaactg gttggtgacc tcacagcagc acaccatcca tcacttgact ggttacatca
      361 ccgggaagta tccagcttaa gggtggggtc cgcgagctta agggtggggt ccgcgagagc
      421 agagtatccg caccccacca cggccagaaa cattcctagc acctcgctat cgccccagtt
      481 cacctcaaaa tacccgccaa gcaggaacgc cacgatgacg gcgatcacgc cgtgcagcag
      541 ccatcgcgcc tctgaacccg gcgcaagacg ccgcaaggct cgcgcgaagt cgtagagcgc
      601 acggccgaag aaccacagca gagccgccag cgccggcaac ccgcgctccg ccgcgtaatg
      661 gaagtaaatg ttgtggagat gctcgtaata cccggatggc aagggtttgg gagcgtcgga
      721 aggaagataa cgggcgaaat tcggtcccac ctgctccggc cccaggccca gaagcggatg
      781 cgccttgatc atctcccatc ccacgcggcg cagcagcgcg cgatgctcgt ttgaatccat
      841 ctcgccgtga gggcggacga tggagacgat ccgttccctg agcatgaatg gattcgccac
      901 aatcacgagg ccgatcgcca acgggaacgc caggatcaac caccggcgct tcagccagac
      961 caaatacgcg gcgcccacgg ccgcgccgcc ccacatgctg cgggtttcgg cggcaagcaa
     1021 cgccacggcc gtcaggcatc ccgccgcaat gagccacggc ctcccacgct tgtcctgcgc
     1081 gaacaaaagc agcgccagaa tcaacaaaag cgccatcatc atttggccgc tgaacgtcat
     1141 ccagtggtcc atgaacccgg tgatccgcga gccgacatag gccgtgtaaa agttcacgtg
     1201 agccgctcgc gcagcctggt attttctggc gaactgctcc aggctccagg ccgccgatgc
     1261 cgacgccgcg agcgcccagc ctaacgcaac gccccgaatc tcacgtatgc cgcgaatggc
     1321 cgagaccacc agaaacaaca tcaagtacac ataaaacttc ttgatttgcg gaagtccatg
     1381 ccgtaaatcc ccgtgcgcgg cagccgaaac aagcgtccat cccatccagg ccgctaatgg
     1441 aacggtcgcc ggaggccagc gcagcttcac ccgtccggcg ataattgcca cgagcgccaa
     1501 tcccatcaga atctgggagg ccgcgatcga gacttccgtg gcgaccgcgg ccgcggcagt
     1561 cagatagagc ggggcttgtt cgatccagaa gtgttccgtt gccgccgggg cggccgtcgc
     1621 ggccatactt agttgtaacg gggcacggaa gagtccaccg agaggctcca ggcgtcgatg
     1681 cctcccgcca tgctctggca cgcctcaacg ccctgctcgc gcagccagtt caccacatgc
     1741 aggctccgga cgccatgatg gcagtagacg atcagcg
//
LOCUS       DASQCV010000298         3158 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2222327, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000298 DASQCV010000000
VERSION     DASQCV010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3158
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2222327"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..607)
                     /locus_tag="VEQ16_04470"
     CDS             complement(<1..607)
                     /locus_tag="VEQ16_04470"
                     /inference="COORDINATES: protein motif:HMM:NF020432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB-like protein"
                     /protein_id="HYP63115.1"
                     /translation="MQFSREPRLHPVLLAELRPTQITVGMREVEEKRRHWQAQKAADQ
                     GEFLGKHLIPVVRGPEQRLYLIDHHHLARALHDEGVEQIAVTVVADLSTLSRGAFWVY
                     LDNRAWIHTYDAEGKRRSHKELPKSIAGLVDDPYRSLAGALRRAGGYAKDTTPFSEFL
                     WADFLRRRIKPKEVDAHPDKTLDQALRLAKSEAANYLPGWCG"
     gene            complement(695..865)
                     /locus_tag="VEQ16_04475"
     CDS             complement(695..865)
                     /locus_tag="VEQ16_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010507412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63116.1"
                     /translation="MKNQQETKKPAQKTHKPGQPGRAKPSPRDQHREALLDEALEETF
                     PASDPPAITRPN"
     gene            1259..2710
                     /locus_tag="VEQ16_04480"
     CDS             1259..2710
                     /locus_tag="VEQ16_04480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010667832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HYP63117.1"
                     /translation="MPVRFAAGTLQTVSARKFFGPAMVLVPGWLFLLVWSLLMLAGCA
                     QHEFYNGAGSGEAYAPTHYYPPPGPPDDPWGPYVQEAAARYSIPQQWIRAVMAQESGG
                     EEQAVSPVGAMGLMQIMPGTYDELRDENGLGPDPFNPEDNILAGAAYIREMYDRYGSP
                     GFLAAYNAGPEAVDSYLAGQSGLPDETVNYLAAVTPNLGNALPMSGALANYEVASAAA
                     PASTPSAVGFATGCDVNAAYDPDHPCTADMANRIAATEQSASSGSCDLNAAYDPDSPC
                     THGSGTQAASGSCDLDRAYDPDSRCAPAGAAAPAVPSVAQVRQAIAQAGTTGCNPDAA
                     YDPDAPCTPAAALASNAVTPPAGQPAPAALSGSMLYQPPGVAPAPVSAAPAPVLMPAV
                     AASLPAGGAWAIQVGAFSNAALARTVAEGVRAELPGALSAATIELPATSPFGGLVLYR
                     ARLANLSAQAAANACSQLNAKQLPCIVVPASAA"
     gene            2808..>3158
                     /locus_tag="VEQ16_04485"
     CDS             2808..>3158
                     /locus_tag="VEQ16_04485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63118.1"
                     /translation="MIDPFIYLAVATCLVAVAFAAPLRQLNWPLWLRAGWAIGIFVAL
                     AFILVHLVGSPLRPVFGTEGPGQRFWEKLVVACWWFLGARGIIALVRFTMVLEQRPRE
                     TQILTDLIAGAVYIA"
BASE COUNT          475 a          923 c         1094 g          666 t
ORIGIN      
        1 gtccgcacca gccgggtaaa taattggcgg cttccgattt tgccaggcgc agcgcctggt
       61 ccagggtttt gtccgggtgg gcgtccacct ctttgggctt gatgcggcgg cgcagaaaat
      121 cggcccacag gaattcgctg aagggggtgg tgtcctttgc atagccgccg gcgcggcgca
      181 gtgcgcccgc gaggctgcgg tagggatcgt ccaccagccc agctatggat ttcggcaatt
      241 ccttgtggct gcggcgtttg ccctcggcat cgtaggtgtg aatccaggcg cggttgtcga
      301 gatagaccca gaaggcgcct cggctcaggg tggaaagatc cgccaccacg gtcacggcga
      361 tctgctcgac gccttcgtcg tgcagggcgc gggcgagatg gtgatggtcg atgagataga
      421 ggcgctgctc tggcccgcgc acgacgggga tgagatgctt gccgagaaat tcgccctggt
      481 cggccgcctt ctgtgcctgc cagtgccttc gtttttcctc cacttcgcgc atgcccacgg
      541 tgatctgggt ggggcgcagc tctgccaata agacgggatg cagcctcggc tcgcgggaga
      601 attgcatgat gacctctgtg acagctttgt ttcagcgcag gctataggcg ggcctgagct
      661 ggcgcaagac tgtggcagag gacgtgttat gccgtcagtt tggccgggtg atggcgggcg
      721 ggtcgctggc ggggaaggtt tcttccagcg cctcatccag cagcgcctcg cgatgctggt
      781 cgcgcgggct gggtttggcc cggcccggct ggcccggctt gtgggtcttc tgggccggtt
      841 tttttgtttc ctgttggttc ttcatcgcat cctctcaaaa cttgcgggcc gcgggcgcgg
      901 cgattggtgc gtgcaatgac gatcagtgcg cgaagccgcg atccggacag ccgcgcggcc
      961 ttcaggctag cataagggcg acgcggtctt caccagggtg gatggtgaaa aattgctaac
     1021 tgccattcct ggcgtagaat ttgtttcgaa ttaacaatat tatgtggcgg cgccgaggag
     1081 tggctgaatt tgctaaaaat ctagctaaat tcttgaaatt tgtcgcctca ttctttgcgg
     1141 agctgcgaca agaatggtgg cgtttgctgg ccctttctgc cgggtattgc aaaaagatgt
     1201 tgtaagcagc tgagtttgcg gcatagtgcg tggtgtctga ggcgatggga gcgttgtcat
     1261 gcccgtcagg ttcgcagcag ggacgctgca gacagtcagt gcgcgcaaat tttttggtcc
     1321 tgccatggtg ctggtgccag gctggttgtt tcttctggtc tggtcgctgc tcatgcttgc
     1381 cggctgtgcg cagcatgaat tctataacgg ggcgggcagc ggcgaggctt atgcgccgac
     1441 gcattattat ccgccgccag gcccgccgga cgatccgtgg gggccgtatg ttcaagaagc
     1501 tgctgcgcgc tacagcattc cccaacaatg gatccgcgcg gtgatggcgc aggaatccgg
     1561 cggtgaggag caggctgtgt cgcccgtggg cgcgatgggg ctgatgcaga tcatgccagg
     1621 gacctatgac gagctgcgcg atgagaacgg gctggggccg gacccgttca accctgagga
     1681 taatattctg gctggtgctg cttatatccg ggaaatgtat gaccgctatg gatcgccggg
     1741 ttttctcgcg gcttataatg cggggccgga ggcggtggac agttatctcg ccggccagtc
     1801 cggcctgccg gacgagaccg taaattatct ggccgccgtc acgccgaatc ttggcaatgc
     1861 gctgcctatg tcaggcgctt tggcaaatta tgaggtggcc agcgctgctg ctcccgccag
     1921 cacgccgagt gcggtggggt ttgcgaccgg gtgtgatgtg aatgccgctt atgatcctga
     1981 ccatccttgc acggcggata tggcgaatag aatcgcggcg acggagcaga gcgcctcttc
     2041 cggcagttgc gatctgaacg cggcctatga tccggacagc ccctgcacgc atgggagtgg
     2101 cacacaggcc gcctccggtt cgtgcgatct ggaccgcgcc tatgaccctg acagccggtg
     2161 cgcgccggcc ggggcggcgg cgcctgcggt gccgagcgtg gcgcaggtgc ggcaggccat
     2221 cgcccaggcc ggcacaaccg ggtgtaaccc ggatgcggcc tatgatcctg atgcgccctg
     2281 cacgccggcg gcggcattgg ccagcaatgc ggtaacgcca cccgcaggcc agcccgctcc
     2341 ggcggcgctg tccgggtcga tgctgtatca gccgccgggc gtagcgcccg cgcccgtgtc
     2401 tgctgcgcct gcacccgtgc tgatgccggc ggtggccgca tccctgcctg caggcggggc
     2461 ctgggcgatt caggtcggcg ccttctccaa cgcggcgctg gcgcgcaccg tggcggaggg
     2521 ggtgcgggcc gaattgccgg gggcgctaag tgccgcgacc atcgagctgc ccgcgacctc
     2581 gccttttggc gggctggtgc tgtaccgggc gcggttggcc aatctctcgg cgcaggcggc
     2641 cgccaatgcc tgcagccagc tcaatgcaaa gcaattgccc tgcatcgtcg tgcctgcctc
     2701 ggcggcgtag cgccgccttt tctttgaccg gcgaaatgcc attgccttga tcggcgccga
     2761 aaaccatgtg acggaacaag atggcgccgg cagcttgggg gtggctcgtg attgatccgt
     2821 ttatctatct ggcggtggcg acctgcctcg tggccgtggc ctttgcggcg ccgctcaggc
     2881 agctcaactg gcccttatgg ctgcgcgcgg gctgggccat cggcatcttc gtggcgctgg
     2941 ctttcattct cgtccatctc gtcggctcgc cgctgcggcc tgtgttcggc acggaggggc
     3001 cgggccagcg cttctgggaa aaactcgtgg tggcgtgctg gtggtttctc ggcgcgcgcg
     3061 gcatcattgc gctggtgcgc ttcaccatgg tgctggagca gcgcccgcgc gagacgcaga
     3121 ttctcacgga cctcattgcc ggtgccgtct acatcgcc
//
LOCUS       DASQCV010000299         1534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_729258, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000299 DASQCV010000000
VERSION     DASQCV010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_729258"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(818..>1534)
                     /locus_tag="VEQ16_04490"
     CDS             complement(818..>1534)
                     /locus_tag="VEQ16_04490"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HYP63119.1"
                     /translation="LLAAQNQEWEELDQMIHRFQQINLAIKYARKPVVAAPFSRALGG
                     GCEVCLHAVRMQASAETYMGLVEVGVGVIPAAGGCKELLARLGDARKAGELIGQAKVS
                     TSAAQARELGFLTELDRISMNPDSLIGDAKNLARSLARDYAPPPRAQIKVGGEAAYAM
                     LKLGIWSYHEGGYISDYDAVVLEKVAHVLSGGRVTGEQTVSDQYLLDLEREAFLSLCG
                     NAKTQERIAHMLKTGKPLRN"
BASE COUNT          246 a          524 c          414 g          350 t
ORIGIN      
        1 ttctgcgtaa atctgcttgg ctactccgcg tttgcggcgc ggctaccggc ggccctctgc
       61 agcatcctct cagccgtagt cttcgcagcg atttcttcgc gcttccttaa ggaacgccga
      121 tggctcgcct tggcgatgtt cctcgttttg cccatccaat tccgctacgg aatagaggcc
      181 cggccgtatt cgcaagggct gctgttttcg ctcctctcgc tgtggatctt tctgaagctc
      241 gaagagcgct attccaccgg catggcgatt ctctacgggc tgagcgtctc ggccggcttg
      301 tactcgcagc ctctgactat ttttcctgca ttggcgcaag ccatctatgc acttccgaag
      361 cggcgcgcgc ctctgctggc ggtgatggcg gccgttttgt catatctccc ctggcatttt
      421 ccggcgcagg cgctctacgc cacagtgcgc ccgcccacca atttcttttc ctggcggcaa
      481 attcatccgc tggtcgtggt gcacggcata acgggcgtcg gttacgtcgg cgccatcccc
      541 ctgctggcgc tggccgcgtg ggcaattttc gagaaatccg aagcccccgc gcggcggctg
      601 ctttattaca ctctcgccgc cgcgtttgcc ggacccatcc tgatggacgc cgtgttcaac
      661 tacttcttcg ccgaccggca actgctgttc gcgatgccgg ctgtggtcct gctggcagtg
      721 acgccttgga gggtgggctt cagcccgcgc gaggctttag cctcgcaacc cgtgagcggc
      781 gctgaagcgc cgcgcgggct aaagcccacc ctcctcatca attcctcaaa ggcttgcccg
      841 ttttcagcat gtgcgcgatg cgctcctgcg tcttcgcgtt tccgcacagg ctcaaaaacg
      901 cctcccgctc caggtccagc agatattggt cggacacggt ttgttcaccc gttactcgac
      961 cgcccgacag cacatgtgcg accttttcca gcaccacagc gtcgtaatcg gatatatagc
     1021 cgccttcatg gtagctccaa attcccagct tgagcattgc ataggctgct tcaccaccca
     1081 ctttaatttg cgcacgcggc ggcggcgcgt aatcccgcgc cagcgatcgc gccagatttt
     1141 tggcgtcccc gatcaaagaa tccgggttca tggaaatgcg gtcgagctca gtcaaaaatc
     1201 ccagctcccg cgcttgggcc gcgctggtgg aaactttggc ctggccgatc agttccccgg
     1261 ctttgcgcgc atcacccaga cgcgccagca gctccttaca ccctcccgcg gcgggaatca
     1321 cgcccacgcc tacttccacc agacccatat acgtttccgc cgacgcctgc atgcgaaccg
     1381 cgtgcagaca aacctcgcat ccgccgccga gcgcgcgtga aaacggcgcc gccaccaccg
     1441 gcttgcgggc gtatttgatc gccaggttta tctgctggaa gcggtggatc atttgatcca
     1501 gctcttccca ctcctggttt tgagcggcga gcag
//
LOCUS       DASQCV010000300         3059 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_397681, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000300 DASQCV010000000
VERSION     DASQCV010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3059
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397681"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            231..473
                     /locus_tag="VEQ16_04495"
     CDS             231..473
                     /locus_tag="VEQ16_04495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63120.1"
                     /translation="MDLLDYFRRGLDAGWVCKRAARLTLDNGKTVRLRPGQVIYTGDF
                     RYQGSDLALTLDQLIGDNPAWTMERPQNLREAVAAR"
     gene            527..1658
                     /gene="prfB"
                     /locus_tag="VEQ16_04500"
     CDS             join(527..595,597..1658)
                     /gene="prfB"
                     /locus_tag="VEQ16_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019462009.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HYP63121.1"
                     /translation="MSAESDQLNEQIGRSVALLRRHLDWDAAVLKLEELNHRAEDPNL
                     WNDAEAAQTVMRERNQIASMVEGVRAIEAETKDTIELIAMAEAESDEAMVADGVATLE
                     RLAIAVKQKEIESLLSGEADGRDAFVEINAGSGGTEAQDWASILYRMYARWAEQKGFK
                     VEVLDESEGEQAGIKSVSLQITGPNAYGWLKTESGVHRLVRISPFDSAARRHTSFASV
                     WVYPVVDDSIEIEINPADLKVDTFRASGAGGQHVNKTESAIRITHVPTGIIVACQTDR
                     SQHRNRATAMNMLKARMYEMELQKREAAAAATEASKTDIGWGHQIRSYVLAPYQLVKD
                     LRTGYETGNPAAVLDGGLDPFMAASLAARVGATRSEASAMAE"
     gene            complement(1683..2552)
                     /locus_tag="VEQ16_04505"
     CDS             complement(1683..2552)
                     /locus_tag="VEQ16_04505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYP63122.1"
                     /translation="MELTQVRYFLALCRSRNFTRAAEECNVTQPAFSRAIQRLEEELG
                     GALLHRERNDTQLTALGREMRPHFQAMVEAAEAAQALAAAYRVPRTGNLRIGLTPGLS
                     TTPIAGAIAEVLRVFPSAELHFSESSAPGLVESMLADALDCALVPEESLLLERVNRWP
                     LYSETAILVCPVAHRLARQNSCAATDLEGETLLVGDSCGGFGKMLEASGKTQLRLQHC
                     RGSAAQICELVAAGLGIALLSNRLPIAAPLTSRPFTDPELVRRIQLTALAGRPLAPAA
                     ASFVRLCRAQLFS"
     gene            complement(2552..>3059)
                     /locus_tag="VEQ16_04510"
     CDS             complement(2552..>3059)
                     /locus_tag="VEQ16_04510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peroxiredoxin-like family protein"
                     /protein_id="HYP63123.1"
                     /translation="GELFPDFLLPSATGHLIDLRDELARGPVVLTFFRGEWCPFCKLT
                     TAALAEAAPRIEAAGGRILALTPETGAWPLRLQQRDASAFEVLADIDFGVGLAAGLVF
                     KIPPLYRARVQGLQLDLRHGNAAWCLPVPAVFIIRPDGVIAWRFADVDFSHRPEPDEI
                     IAALQRLG"
BASE COUNT          607 a          894 c         1037 g          521 t
ORIGIN      
        1 gcattgcggc gttgtattgg gccgcattgc ggccggggcg gcgcgagtct ggcccgccgc
       61 cctgaagccc ggttgttatc cccatgcagc ctggtgccac cgaatgatgc gagaatctgg
      121 caaatacatt aagaatcgga cgtagatcgg ccacaatgta tcaattcttg ttgaccatct
      181 ttattatgta gatcttaata ttttagaagc gcaccaaatc ggagatcgtc atggatctgc
      241 tggattattt tcgcaggggc ctggatgccg gctgggtctg caaacgcgcg gcgcgtctga
      301 cgctggataa tggtaagacc gtgcggctgc gtccggggca agtgatctat acgggcgatt
      361 tccgctatca aggctcggat ctggccctga cgctggatca actgattggc gataatccgg
      421 catggaccat ggagcggccg caaaatctgc gcgaagcggt ggcggcaagg tagctacgcc
      481 tggagcgcac tgtacgaacc gcgcccgcca gtgttaagga gcgggaatgt ccgctgaatc
      541 cgaccaattg aatgagcaga tcggccgctc ggttgccctg ctgaggaggc atctttgact
      601 gggatgccgc tgttctcaag ctcgaagagc tgaaccaccg cgccgaagac cctaatctgt
      661 ggaatgacgc cgaggcggca cagaccgtca tgcgcgagcg caaccagatt gcgtccatgg
      721 tggagggcgt gcgcgccatc gaggctgaga caaaggacac gatcgaactg atcgccatgg
      781 ccgaggccga gagcgacgaa gcgatggtgg cagatggcgt ggccacgctg gagcggctgg
      841 ccatagcggt gaagcagaaa gaaattgaat cgctgctctc cggcgaggcc gatgggcgcg
      901 atgccttcgt tgaaatcaat gccggctccg gcggcactga ggcgcaggat tgggcttcaa
      961 tcctgtatcg catgtatgcg cgctgggcgg agcagaaggg gttcaaggtc gaggtgctcg
     1021 acgaatccga aggcgagcag gccgggatca agtccgtatc tctgcagatt acgggcccca
     1081 acgcctatgg ctggctgaag acggagagcg gcgtgcatcg gctggtgcgc atctcgccgt
     1141 ttgattcggc cgcgcgccgg catacgagct ttgcctccgt gtgggtgtat ccggtggtgg
     1201 atgactcaat cgagatcgag atcaatccag cagacctcaa ggttgacacg ttccgagcct
     1261 ccggcgcagg cggccagcac gtgaacaaga ccgaatccgc catccgcatc acccacgtgc
     1321 cgaccggcat catcgtggcc tgccagaccg accgctccca gcaccgcaac cgcgccacgg
     1381 cgatgaacat gctgaaggcg cgcatgtatg agatggagct gcagaagcgc gaggcggcgg
     1441 cggcggccac ggaagcatcc aagaccgata ttggctgggg gcatcagatc cgttcttacg
     1501 ttctggcgcc gtaccagctg gtgaaggatc tgcgcaccgg ctacgaaacc ggcaacccgg
     1561 cggcggtgct cgatggcggg ctggacccat tcatggcggc gtcgctcgcg gcacgggtgg
     1621 gggcgacaag gtctgaagct tcggcgatgg cggagtgaag cgggcttcgc tcgcgatgac
     1681 gcttaagaaa acagctgcgc ccggcacaat cggacaaaac tcgccgctgc cggggccagc
     1741 ggcctaccgg ccagcgccgt cagctggatg cggcggacaa gttccgggtc cgtaaagggg
     1801 cggcttgtca gaggtgctgc gataggcagg cggttggaga ggagggcgat gcccaggccg
     1861 gctgccacta gctcgcagat ttgcgccgcg gagccgcggc aatgctgcag gcggagttgg
     1921 gttttccctg atgcctccag catttttccg aagcccccgc aggaatcgcc taccagcaac
     1981 gtttcgcctt ccagatcggt ggcggcgcag gaattctgcc gcgccaggcg gtgggcgacg
     2041 gggcagacca atatcgccgt ttcgctgtag agcggccagc gattcacgcg ttcaagcaac
     2101 agtgattctt ccggcaccag ggcgcagtcc agcgcgtcag ccaacatcga ttctaccagg
     2161 cccggtgcgg agctttcaga aaaatgaagt tctgcgctgg gaaaaacccg cagcacctcg
     2221 gcaatggcgc cagcgatggg cgtggtggaa aggccgggtg tgaggccgat acgcagattg
     2281 cccgtgcgcg gcacacggta cgcggcggcc aacgcctgtg cggcctctgc ggcctcaacc
     2341 atggcctgga aatgcgggcg catctcgcgg ccgagcgcgg tcaattgcgt gtcgttacgc
     2401 tctctgtgta acaaagcccc gcccaattct tcttccaacc gctggatggc gcgcgagaaa
     2461 gccggttgcg tcacgttgca ttcctccgcc gcgcgggtga aattcctgct ccggcataaa
     2521 gcgagaaaat agcgcacctg ggtaagttcc atcagccgag cctctgcagc gcggcgatga
     2581 tctcgtccgg ctccggccgg tgcgagaaat cgacgtcggc gaaacgccag gcgatgaccc
     2641 catcggggcg gatgatgaaa acggccggca cgggcaggca ccaggcggcg ttgccatgac
     2701 gcagatcgag ctgcagccct tgcacccgcg cgcggtaaag gggcgggatt ttgaaaacca
     2761 gcccggcggc aaggccgaca ccgaaatcga tgtcggccag tacctcgaag gcgctggcgt
     2821 cgcgctgttg caggcgcagc ggccatgcgc cggtctcagg cgtcagcgcc aggatgcgtc
     2881 cgccggcggc ctcgatgcgt ggcgcggctt cggccagggc agcggtggtg agcttgcaga
     2941 aggggcacca ttccccgcgg aagaaggtga gcaccaccgg gccgcgggcc agctcgtcgc
     3001 gcagatcgat gagatggcca gtggcgctgg ggagcaggaa atcgggaaaa agctcgcct
//
LOCUS       DASQCV010000301         2150 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_66972, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000301 DASQCV010000000
VERSION     DASQCV010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66972"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..949
                     /locus_tag="VEQ16_04515"
     CDS             <1..949
                     /locus_tag="VEQ16_04515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rhamnan synthesis F family protein"
                     /protein_id="HYP63124.1"
                     /translation="RQITYVWPQGEIALGPKVALFMHFDRRGLVRTQLLHYMRELREN
                     GRDVVFVSNSNKIKPEALASLQEICAGVIVRKNIGYDFGAWRDAIDYLSLPRADTEEI
                     ICANDSVFGPLTPLGDVLRRLDYARADIWGLTESWQTRYHLQSFFIAFGPKAIRAEAF
                     RKFWTSVRPVPVKSYIVKAYEIGVTQAMMKGGLHCAALWPYEALVKLANRAELEKLIE
                     AEESELGKLDPVQVARKRQVLRIRDGKAKRVAQNPTSDLWRQLLISGFPFIKRELLRD
                     NPTKVEDVGDWEEVVREELGADPDQILLDLRTMLKGSAP"
     gene            970..1713
                     /locus_tag="VEQ16_04520"
     CDS             970..1713
                     /locus_tag="VEQ16_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYP63125.1"
                     /translation="MLAASWTLFAVPVQAFLLTRPGLGKERFARTYWRGVARTLGLRL
                     RVIGELPAARPVLFVSNHSSWVDIVALGAVLPACFVAKGDVAGWQGIGTIARLGRTIF
                     VSRARESVGREQRELAARLAAGDNIILFPEGTTSDGNHILPFASSFLTLAFGPAQPAV
                     QPVTIVYDELDGRPAGPEGREEVAWHGDADLAPHFMKLGRRRSIRASIRLGTPIAPGA
                     YQNRKTLTAVLEQEITTTAAALWEGRLES"
     gene            1875..>2150
                     /locus_tag="VEQ16_04525"
     CDS             1875..>2150
                     /locus_tag="VEQ16_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010668399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HYP63126.1"
                     /translation="MNAPDLDKAASSTADRTPRKLHVVTHGCQMNVYDSARMTDLLRP
                     LGYTTVDAPEGADMVIMNTCHIRERAEEKVFSALGRLRVMKEEQGGNM"
BASE COUNT          391 a          630 c          710 g          419 t
ORIGIN      
        1 caggcagatt acctatgtct ggccgcaggg cgagatcgcg cttgggccga aagtggccct
       61 gttcatgcat ttcgaccggc gcggcctcgt ccgcacgcaa ttgctgcatt acatgcgtga
      121 gctgcgcgag aatgggcgcg atgtcgtgtt cgtcagcaat tcaaacaaga tcaagcccga
      181 ggcgctggct tcgttgcagg agatttgcgc cggcgtgatc gtgcgcaaga atatcggcta
      241 tgatttcggc gcctggcgcg acgccatcga ttatcttagc ctgccgcgcg cggatacgga
      301 agagatcatc tgcgccaatg acagcgtgtt tggcccgctg acgccgctgg gcgatgtgct
      361 gcgccggctg gattatgcgc gcgccgatat ctggggcctc accgaaagct ggcagacgcg
      421 ctatcatctg caatccttct tcattgcctt tggcccgaag gccatccgtg ctgaagcgtt
      481 ccgcaaattc tggacatccg tgcggccggt gccggtgaaa tcctatatcg tcaaagccta
      541 tgagattggc gtgacccagg cgatgatgaa aggcgggctg cattgcgccg ctttgtggcc
      601 ctatgaggcg ctggtgaagc tggccaaccg tgccgagctg gaaaaactca tcgaggccga
      661 ggagagcgag cttggcaagc tcgacccggt gcaggtggcg cgcaagaggc aggtgctgcg
      721 catacgtgac ggcaaggcga agcgcgtggc gcagaaccca acctccgatt tgtggcgcca
      781 gctgctcatc tcgggttttc ccttcatcaa gcgcgaattg ctgcgcgaca acccgaccaa
      841 ggtggaggac gtgggcgatt gggaagaggt ggtacgcgag gagctgggcg ccgatcctga
      901 ccagatattg ctcgatttgc gtaccatgct gaagggctcc gcgccctgat caggattctg
      961 ctccgcctgg tgctggcggc ttcatggaca ttattcgccg tgcccgtgca ggcttttctg
     1021 ctcacccgcc ctgggctggg caaggagcgg ttcgcccgga catattggcg cggcgtggcg
     1081 cggactttgg ggctcaggct gcgcgtcatc ggtgagttgc ctgcggcgcg gccggtgctg
     1141 ttcgtgtcca atcacagctc ctgggtggat atcgtcgcac ttggcgcggt gctgccggcc
     1201 tgtttcgtcg ccaaggggga cgtggctggc tggcagggca tcggcaccat cgcccggctg
     1261 gggcggacga tttttgtctc ccgcgcgcgt gagagcgtgg ggcgcgagca gcgtgagctg
     1321 gcggcgcggc tggcggcagg cgacaacatc atcctgtttc ccgaaggcac gacctcggac
     1381 ggcaaccata tcctgccctt cgcctcgtcc tttctcaccc tcgccttcgg cccggcgcaa
     1441 cccgccgtgc agccggttac tatcgtttat gacgagctgg atggccggcc ggcggggccc
     1501 gaagggcgcg aggaggttgc ctggcatggc gatgcggatc tcgcgccgca tttcatgaaa
     1561 ctggggcgcc gccgcagcat cagggccagc atcaggctgg gtacaccgat tgcgccgggc
     1621 gcctatcaga accgcaagac gctgacggcg gtgctggagc aggagattac cacgaccgcc
     1681 gccgcacttt gggaaggaag gttagagtcc tgaaagcgtt ggcttacgcc aaagcgtcac
     1741 gcaaaattcc ttgacacggc gcgttgaagc atagcgaaat tgcgttacgt tcaggaggat
     1801 cttatcagtt tgatcttgac ctgccttgcc gccaagcgct tttccgtccg ggaaaaccgg
     1861 atggacctca acgtatgaac gcgcctgatc tagacaaagc agcctcgagc acagcggacc
     1921 gcacgcctcg taaactccat gttgtgaccc atggctgcca gatgaacgtg tatgacagcg
     1981 cgcgcatgac agatcttttg cgcccgctcg gctacaccac cgtggacgcg cccgaagggg
     2041 cggacatggt gatcatgaac acctgccaca tccgcgagcg tgccgaggag aaggtattct
     2101 ccgcgctggg acggctgcgc gtgatgaagg aggagcaggg cggcaatatg
//
LOCUS       DASQCV010000302         1635 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_896236, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000302 DASQCV010000000
VERSION     DASQCV010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_896236"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..449)
                     /locus_tag="VEQ16_04530"
     CDS             complement(<1..449)
                     /locus_tag="VEQ16_04530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYP63127.1"
                     /translation="MSLATRPSNVPLVHQWMPFTANRQFQEQPRIITRAEGVYYYNTR
                     GEKLLDGSSGLYCIPLGHGRREIREAIVKQLEELDYAPPFQYGVPTAFRLANEMAQML
                     PQGLNRIMFAGSGSEAADTALKVALQYHRARGEGSRMRFIGRERGYHG"
     gene            787..>1635
                     /locus_tag="VEQ16_04535"
     CDS             787..>1635
                     /locus_tag="VEQ16_04535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63128.1"
                     /translation="MTDIHFIKPDQGLCSPAEAARMIGEGRVLLLAGAEADLATLPPG
                     CWIGGTVGYFATPQGGVAAKGTVFYTDFTALTDGASWRSFGAGDIDEIASHYPANGFA
                     LVIIPGFSKLLGHVAGRIMEYDGLYNVPLMGWVSAVALDGLPETMPPDRPKSFAGGPQ
                     AENERAAVLYVSLPARYFAQLHIANLFTPGTGPEIRFLKSGQVQDGDCLIGGTRTNLA
                     RYMAAQKIDRRLPLVADHEGALLNVAILTKDVSKGSVTFLAPVSTALTYRFAELIVDY
                     EAEFVQA"
BASE COUNT          320 a          468 c          516 g          331 t
ORIGIN      
        1 ccatgatagc cgcgctcgcg gccgatgaag cgcatgcgcg aaccttcgcc gcgggcgcgg
       61 tgatattgca gcgccacttt cagcgcggtg tcggcagctt cggagcccga gccggcgaac
      121 atgatgcggt taagaccctg agggagcatc tgcgccatct cgttggcgag ccggaaggca
      181 gtgggcacgc cgtactgaaa gggcggcgcg taatccagct cctcgagctg cttgacgatg
      241 gcctcgcgga tttcgcggcg gccatggccg agcggaatgc aataaagtcc ggacgagccg
      301 tccaggagtt tttcgccgcg tgtattataa taataaacac cctcggcgcg agtgatgatc
      361 cgcggctgct cctggaattg ccggttggcc gtgaaaggca tccattgatg aaccagggga
      421 acgttgcttg gacgagtagc gaggctcatt attgcactcc ttcagatgca cggcagttta
      481 ctattttaaa cgcctttggc cagagttttc tttaggcgcg gctatgcggg gccgtcatgg
      541 cggaggcggt taagaataat taacgcctgt ccgagctccg ccggctgtcc cacggccctt
      601 tcagcctctg gaaaggatta taagccatgc tgcgcaggca aaaccaccct tgcggcacga
      661 tggcgcaggg cagaggtact gcataagcag gacaatagcg gggaaaaggc gccatgatgt
      721 ttcgaatcga aacatatact ggtgcgacgg atcgatggtg ggctaggttc acgatggatt
      781 ctatgcgtga cggatattca tttcattaag ccagaccaag ggctttgctc acccgcggaa
      841 gcggcgcgga tgatcggcga gggccgggta ctgctgctag cgggcgctga ggcggatttg
      901 gccacactgc ctccaggctg ctggattggc ggcacggttg ggtattttgc cacgccgcag
      961 ggtggcgtgg cggccaaggg cacggttttc tacaccgact tcactgccct caccgacggc
     1021 gccagctggc gcagctttgg cgcgggagat attgacgaaa tcgccagcca ttatccggcc
     1081 aacggcttcg cactggtgat cattcccggt ttttccaagc ttctcggcca tgtggccggg
     1141 cgcatcatgg aatatgatgg gctgtataac gtgccgctga tgggctgggt gagcgccgtg
     1201 gccctggacg gcctgcccga gaccatgccg ccggataggc cgaaaagctt cgctggcgga
     1261 ccgcaggcgg aaaacgagcg cgccgccgtg ctctatgtca gcctaccggc acgttatttc
     1321 gcgcagttgc atatcgccaa tctgttcaca cccggcactg ggccggaaat acgtttcctc
     1381 aaatccggcc aggtccagga tggcgactgc ctgatcggcg gaacacgtac caatctcgcg
     1441 cgctatatgg cggcgcagaa gatcgaccgt cgcctgcctc tggtcgccga ccatgagggg
     1501 gcgttgctca acgtcgcgat cctgacgaaa gatgtcagta aagggagcgt cactttcctg
     1561 gccccggttt ccaccgccct cacctaccgc tttgccgaac tgatcgtgga ttacgaagcg
     1621 gaattcgtcc aggcc
//
LOCUS       DASQCV010000303         4415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_67118, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000303 DASQCV010000000
VERSION     DASQCV010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4415
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67118"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            137..664
                     /locus_tag="VEQ16_04540"
     CDS             137..664
                     /locus_tag="VEQ16_04540"
                     /inference="COORDINATES: protein motif:HMM:NF021517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2244 domain-containing protein"
                     /protein_id="HYP63129.1"
                     /translation="MDKGGTLYFEAELRPHRSLSRTALLCVLGGMLAGSLYVTTIMYF
                     LGAWPVIGFNGADIALAALLFWLNSRAARAREIIRLSDTALEITDIAPNGRREQMTLS
                     PDWARVELEERPATVPALFLRARGAVREIGRQLGEAQKRDLAEALDRALARRRMPPHL
                     VPNSLSPASPRPGRI"
     gene            complement(610..1233)
                     /gene="upp"
                     /locus_tag="VEQ16_04545"
     CDS             complement(610..1233)
                     /gene="upp"
                     /locus_tag="VEQ16_04545"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HYP63130.1"
                     /translation="MLTIIDHPLVRHKLTLLRKKGTTTGEFRRLAREISLLLGYEVLR
                     DLPLEPITIETPLEEMEAEQVQGKKLCFISILRAGEGILDGMLDLVPSARIGHVGLYR
                     DPVTHEPVEYYFKVPEALEERLCVVLDPMLATGHSAAAAVTRLKEAGAQNIKFVCLIA
                     APEGVAEFSAAHADVPIYAAGLDRQLDDHAYIRPGLGDAGDRLFGTK"
     gene            complement(1262..2893)
                     /locus_tag="VEQ16_04550"
     CDS             complement(1262..2893)
                     /locus_tag="VEQ16_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019084903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP63131.1"
                     /translation="MARKPRLSRLLRDILLVNLLPLALIFAALLYLDQYQQGLLAAQV
                     SALREQARIYAGAIAQTAVQSSNGQTSVNPDLAQPLLFSLTAPTPNAQALIYGPDGTL
                     IANSRVHPGQGGNIVTEPLSAPPPPGVFSRIIGFIYDHLSGSVIGAQDESGIIGSGAG
                     QNPDTLGWQPDPRTVLVMTSTSPDQETPPFVRRDSAGTLLITVAEPITQSQQVVGTVL
                     LTREASEVDAAVLAVRITILGLFALALLLTVIVSFYLSRTIASPISRLAAAAERMREG
                     RTRTPPLPEAVTGRNDEIGTLGRTLESSAQALWARMDAIEKFAADVSHEIKNPLSSIR
                     SAIETLTRVEDPARASRLLAIITQDVARLDRLITDISDSSRLDAELSRSRYEIVDMAK
                     MLATLAEIHDATRKEGSPFMMLDAPVEGLYVRGSETRLVQVLRNLIGNAISFSPAGGK
                     IWLRGRETGGLIELAVEDEGPGIPDGKLDSIFDRFYSERPQTEQFGSHSGLGLSISRQ
                     IIEAHQGRISAENRRDEDGNIVGARFVIRLPKAGE"
     gene            complement(2896..3597)
                     /locus_tag="VEQ16_04555"
     CDS             complement(2896..3597)
                     /locus_tag="VEQ16_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYP63132.1"
                     /translation="MKYTIALVDDDRNILTSVQMTLEAEGFLVRTYTDGESALQALLA
                     KPADLAVLDIKMPRMDGMELLQKLRARSAMPVIFLTSKDDELDELMGLRLGADDYITK
                     PFSQRLLLERIRALLRRNDSTRAEATGAAPASVITRGDLSLDETKHQCLWKGKDIQLT
                     VTEFLLVKALAQRPGMVKSRDQLIDAAYGENVYVDDRTIDSHVKRLRKKFRNEDGEFD
                     QIETLYGIGYRYKDA"
     gene            3653..4138
                     /locus_tag="VEQ16_04560"
     CDS             3653..4138
                     /locus_tag="VEQ16_04560"
                     /inference="COORDINATES: protein motif:HMM:NF025252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HYP63133.1"
                     /translation="MAANQEPGRLEAAAALLRRARCAMLATVHEGQPYASLVTPALDT
                     DGAPVLLLSGLAAHTRHLRANPACALLFTGQAVDENPQTTPRLTLTGTARPVAADEVK
                     MRYLQIHPYAASYAGFGDFSFWKITVSTSQYIGGFGNAGLLEYSALQQEISAQLDAGL
                     G"
     gene            4222..>4415
                     /locus_tag="VEQ16_04565"
     CDS             4222..>4415
                     /locus_tag="VEQ16_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HYP63134.1"
                     /translation="MADISPLRDAAPLAGTGVRVAAELHANLTAPALVAHSLRKGESR
                     LSADGALIVRTGVHTGRSVS"
BASE COUNT          744 a         1395 c         1463 g          813 t
ORIGIN      
        1 atgtacgctc cgcgccggtt ctcgcaaagc accgcagctg gctcaccgga gcgagttttg
       61 aaacaacctc tcagtttcgg cattttatcc ttggcaaatc cggcgggcgg acgatctatg
      121 cggtatggat gcgccaatgg acaagggcgg gacgctgtat ttcgaggccg agctgcggcc
      181 gcaccgcagc ctgtcgcgca cggcgttgct ttgtgtgctg ggcggcatgt tggcgggctc
      241 gctctatgtc accacgatca tgtattttct cggcgcctgg ccggtcatcg gcttcaacgg
      301 cgcggatatc gcgctcgccg ccctgctctt ctggctgaac agccgcgccg ccagggcgcg
      361 ggagatcatc cggctcagcg acacggcgct ggagattacc gacatcgcgc ccaatggacg
      421 gagggaacaa atgacgctct cgccggattg ggcgcgggtg gagctggagg aacgcccggc
      481 cacggtgccg gcgctgtttt tgcgcgcccg gggtgctgtg cgggaaatcg gccgccagct
      541 tggcgaggcg cagaaacgcg acttggccga ggcgctggac cgcgccctcg cccgccgccg
      601 catgccgcct cacttggtgc cgaacagcct gtcccccgca tcgccgaggc cggggcggat
      661 ataggcgtgg tcatcaagct gccggtccag cccggcggcg tagatgggca catcggcatg
      721 agcggcgctg aattccgcca ccccttccgg tgctgcgatg aggcagacga atttgatatt
      781 ctgcgccccc gcctctttta gcctcgttac ggcggcggcg gcggaatggc cggtggccag
      841 catcgggtcc agcaccacgc agagccgctc ctccagagcc tcgggcactt tgaaataata
      901 ttcgaccggc tcgtgcgtca ccgggtcgcg gtacagcccg acatggccga tgcgcgctga
      961 cggcaccagg tcgagcatgc catcgaggat gccttcgccc gcgcgcagga tggagatgaa
     1021 acagagtttc ttgccctgca cctgctccgc ctccatctcc tccagcggtg tctcgatggt
     1081 gatgggctcc agcggcaggt cgcgcagcac ctcatagccg agcagaagcg aaatctcgcg
     1141 ggcgaggcgg cggaattcgc ccgtggtggt gcccttcttg cgcagcaagg taagtttatg
     1201 ccgcaccagc ggatggtcga tgatggtcag cattcatgcc ccctgatgat cgagcctcgg
     1261 atcattcccc ggctttgggc aatctgatca caaatcttgc gccgacgata ttgccgtcct
     1321 catcgcgccg gttctcggct gagatgcggc cctggtgcgc ttcgatgatc tggcgcgaaa
     1381 tggacaggcc gaggccggaa tggctgccga attgttccgt ctgcggccgc tcggaataga
     1441 aacggtcgaa gatggaatcc agcttgccat ccgggatgcc cggcccttca tcttccaccg
     1501 ccagctcgat gagcccgccc gtctcgcggc cgcggagcca gatttttccg cccgcgggcg
     1561 agaaggagat ggcgttgccg atgaggttgc gcagcacctg caccagccgc gtctcggagc
     1621 cgcgcacata cagcccttcc accggcgcat ccagcatcat gaaggggctg ccctccttgc
     1681 gcgtggcgtc gtgaatctcg gccagggtgg cgagcatttt cgccatatcc acaatttcat
     1741 aacgcgagcg cgacagctcg gcatcgaggc gcgatgagtc ggaaatatcc gtgatcagcc
     1801 tgtccagccg cgccacgtcc tgggtgatga tggcgagcag ccgcgaggcg cgggccgggt
     1861 cctccacgcg ggtcagcgtc tcaatggccg agcggatgga ggaaagcggg ttcttgatct
     1921 cgtggctgac atcggcggcg aatttctcga tcgcgtccat gcgcgcccac aaggcttgcg
     1981 ccgagctttc cagcgtgcgg ccgagcgtgc cgatctcgtc attccgccct gtcaccgcct
     2041 cgggcagagg cggggtgcgg gtgcggccct cgcgcatgcg ctcggcggcg gccgcgaggc
     2101 gcgaaatggg gctggcgatg gtgcgggaga gatagaagga gacaataacg gtgagcagca
     2161 gtgccaaggc gaacaggccg agaatggtta tccgcaccgc cagcacggcg gcgtccacct
     2221 cgctcgcctc gcgcgtcagc agcaccgtgc ccaccacctg ctggctctgg gtgatcggct
     2281 ccgccacggt aatgagcagc gtcccggcgg aatcgcgccg cacgaagggc ggcgtctcct
     2341 ggtcgggcga ggtggaggtc atcaccagca ccgtgcgcgg atcgggctgc cagcccagcg
     2401 tgtccgggtt ttggccggcg ccggagccga tgatgccgga ttcatcctgc gcgccgatga
     2461 ccgagccgga gagatggtca tagatgaagc cgatgatgcg gctgaaaaca cccggcggcg
     2521 ggggagccga caacggctcg gtgacgatat tgccgccctg ccccggatgc acgcgggaat
     2581 tggcgatgag cgtgccgtcc ggcccgtaga tgagcgcctg ggcgttgggc gtgggcgcgg
     2641 tgagggagaa cagcaaaggc tgcgccaggt ccgggttgac gctggtctgg ccgttactgc
     2701 tctgtaccgc cgtctgcgcg atggcgccgg cataaatccg cgcctgctcg cgcagcgcgc
     2761 tcacctgggc ggcgagcagc ccctgttgat actggtccag atagagcaag gccgcgaaaa
     2821 taagcgccag cggcaacaga ttgacgagga gaatgtcacg cagcaggcgc gacaggcggg
     2881 gtttgcgggc caggatcagg catccttgta gcggtagcca atgccataca gcgtctcgat
     2941 ctggtcgaac tcgccgtcct cattgcggaa tttcttgcgc agccgcttca catggctatc
     3001 gatggtgcgg tcatcgacat acacgttttc gccataggcg gcgtcgatca gctggtcgcg
     3061 cgacttcacc atgccgggcc gctgggcgag ggccttcacc agcaaaaatt ccgtcacggt
     3121 aagctggatg tccttgccct tccacaggca ctgatgcttg gtctcatcca ggctcaggtc
     3181 gccgcgggtg atgacgctgg cgggcgcggc gccggtggcc tcggcgcggg tggaatcatt
     3241 gcgccgcagc aaggcgcgga tgcgctccag cagcaaacgc tgcgagaagg gtttggtgat
     3301 gtagtcatcg gcccccaggc gcagccccat cagctcgtcc agctcgtcat ccttggaggt
     3361 gaggaagatg accggcatgg cggagcgggc gcgcaatttc tgcagcagct ccatcccatc
     3421 catgcgcggc atcttgatgt ccagcaccgc gaggtcggcc ggcttggcca gcagcgcctg
     3481 gagcgcgctt tcgccgtccg tataggtgcg gacgaggaaa ccctccgcct ccagggtcat
     3541 ctgcaccgag gtgaggatat tgcggtcgtc atcgaccagg gcgattgtgt atttcatgct
     3601 ttaacccatg cttggccatg tggcctttct gcatccaggg agtgaccgga ttatggcagc
     3661 aaatcaagag cccggccggc tggaagcggc ggcggcgctc ttgcggcgcg cgaggtgtgc
     3721 catgctggcc acggtgcatg aggggcagcc ttacgcctcg ctcgtcaccc cggcgctgga
     3781 taccgacggc gcgccggtgc tgctgctctc cggcctcgcc gcccatacca ggcatttgcg
     3841 ggccaacccg gcctgcgccc tgctgttcac cggccaggcg gtggacgaaa atccgcaaac
     3901 cacgccgcgc ctcactttaa ccggaacggc ccggcccgtg gcggcggatg aggtgaaaat
     3961 gcgctatctg caaattcatc cctacgccgc ctcctatgcc ggttttggcg atttttcttt
     4021 ctggaagatt accgtttcga catcgcagta tataggcggc ttcggcaatg cgggcctttt
     4081 ggaatattcc gcgttgcagc aagaaatttc tgcgcagttg gatgcgggat taggttgaag
     4141 ccgggtggcg gtctgcgtat gaaggtctat tagaacctta ttctctgact tgaacgagag
     4201 gaccgacccc gcgtgaacca tatggccgat atttctccgc tccgcgatgc cgcccccctc
     4261 gctggcactg gtgtgcgcgt cgccgccgag cttcatgcca atctgaccgc ccccgcgctc
     4321 gtggcccata gcctacgcaa gggcgagagc cgtctgtccg ccgatggcgc gctgatcgtg
     4381 cgcaccggcg tgcatacggg ccgctccgtg agcga
//
LOCUS       DASQCV010000304         1548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1227278, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000304 DASQCV010000000
VERSION     DASQCV010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1227278"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..419
                     /locus_tag="VEQ16_04570"
     CDS             <1..419
                     /locus_tag="VEQ16_04570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007004026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="BRCT domain-containing protein"
                     /protein_id="HYP63135.1"
                     /translation="AGMEAAVVVGSDARLELGSISGIGPTIATDLAAFFAEEHNLQTL
                     AALEREVRVLDAVTATAVDSPFAGKVVVFTGTLTMARPEAKARAEALGAKVTESVSKK
                     TDFVVVGEDAGSKAKKAAELGVQTLTEQEFRDMAGF"
     gene            468..1142
                     /locus_tag="VEQ16_04575"
     CDS             468..1142
                     /locus_tag="VEQ16_04575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter"
                     /protein_id="HYP63136.1"
                     /translation="MFGQALAAFLLAFPALFSIVNPPGGAIIFNEVTSGHSHAQRVSL
                     ARTVALYSTIVMLGALLLGTYVLSFFGISLDALRIAGGLVVSVRAYEMLSAPDDTAAR
                     KQNEARPVEAAPMGNLGGYAFFPLTLPFTTGPGTIAVAISLGTARPDQLEAAGAFYAG
                     AALAVLAMAAIIWASYAMADRLAAFLGDTGRVVASRLAAFLLLGIGVQIALNGIIPVL
                     HRALGS"
     gene            1193..>1548
                     /locus_tag="VEQ16_04580"
     CDS             1193..>1548
                     /locus_tag="VEQ16_04580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HYP63137.1"
                     /translation="MGEFERDLFILMHDVARLIRVEADRRAKRMGMTRAQWGILRRLA
                     AQPGCSQKELADMLEVEPITVARLVDRLEVAGMLERRADEQDRRIWRLHLLPAAMEVL
                     AEINRELKALTDAISA"
BASE COUNT          248 a          419 c          571 g          310 t
ORIGIN      
        1 aggcggggat ggaggcggct gtggtggtcg gctccgatgc aaggctggag ctgggctcga
       61 tttccggcat cggcccgacg attgcgacgg acctagcggc gttttttgcc gaggaacata
      121 atctccagac gctggcggca cttgagcgtg aggtgcgggt gctggatgcg gtgaccgcca
      181 ccgcggtgga ttcgcctttt gcggggaaag tggtggtgtt caccggcacg ctgaccatgg
      241 cacggccgga agccaaggcg cgggctgagg cgctgggcgc gaaagtgacg gaatccgttt
      301 cgaagaagac ggattttgta gtggtcggcg aggatgcggg gagcaaggcg aagaaagcgg
      361 cggagctggg ggtgcagacg ctgacggagc aggaattccg cgacatggcg gggttttagc
      421 gtaaccgcaa ctgacctatt ttggcacgac agggaggcgg aacaaaaatg ttcgggcagg
      481 ctttggcggc gtttctgttg gcctttccgg cgttgttctc catcgtcaat ccgccgggcg
      541 gagcgattat cttcaatgag gtgacgtcgg ggcattccca tgcgcagcgt gtgtcgctgg
      601 cacgaacggt ggctttgtat tccaccatcg tcatgctggg ggcgctgttg ctgggcacct
      661 atgtgctgag tttcttcggc atctcgctgg atgcgctgcg cattgccggc gggctggtgg
      721 tgtcggtgcg ggcttatgag atgctgtccg cgccggatga caccgccgcg cgcaagcaga
      781 acgaagccag gccggtggag gcggcgccga tgggtaatct gggcggctat gccttttttc
      841 cgctcacttt gccctttacc accgggccgg gcacaatcgc ggtggccatc tccctgggca
      901 cggcgcggcc ggaccagttg gaggcggcgg gcgccttcta tgcgggagcg gcgctggcgg
      961 tgctcgccat ggcggcgatc atctgggcct cctacgccat ggcggaccgg ctggcggctt
     1021 ttctggggga tacggggcgg gtcgtggcgt cccggctcgc ggcctttttg ctcctgggca
     1081 tcggcgtgca gatcgcgctg aatggcatta ttcccgtatt gcaccgcgcg ctgggcagct
     1141 agacggaaat agtatagtag ctgtttataa gcttgcttat tatgtgctgg ctatgggcga
     1201 attcgaacgc gatctattca ttctgatgca tgacgtggca cggctgatcc gcgtggaagc
     1261 ggaccgccgc gccaagcgca tgggcatgac gcgcgcgcaa tggggcatct tgcggcgcct
     1321 cgccgcccag cctggctgca gccagaagga gctggccgac atgctggagg tcgagcccat
     1381 caccgtggcg cggctggtgg accggctgga ggttgccggc atgctggagc gccgggccga
     1441 cgagcaggac aggcgcatct ggcggctgca tctgctgcct gccgccatgg aagtgctggc
     1501 ggagatcaat cgtgaactga aggctctgac cgatgcgatc agcgccaa
//
LOCUS       DASQCV010000305         1668 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2387638, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000305 DASQCV010000000
VERSION     DASQCV010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2387638"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..708)
                     /locus_tag="VEQ16_04585"
     CDS             complement(<1..708)
                     /locus_tag="VEQ16_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HYP63138.1"
                     /translation="MNAALSDAAAIARLEKTIETELHGLQEMRAALGNGLAAAFLASV
                     RVIEEAGGAVVVTGMGKSGHIGKKIAATLASTGTHSHFVHPAEASHGDLGMIMPQDVV
                     LALSWSGEAPELANIITYTKRFGIKLIAITSRPDSALGRAADIGLFLPAAEEACPNGL
                     APTTSTTMQLVAGDALAVLLLERRGFSPHDFRQYHPGGKLGAQLLTAGQLMHKGNELP
                     LVTKDMPLSQGIVEMTSK"
     gene            complement(705..1553)
                     /gene="kdsA"
                     /locus_tag="VEQ16_04590"
     CDS             complement(705..1553)
                     /gene="kdsA"
                     /locus_tag="VEQ16_04590"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007005052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HYP63139.1"
                     /translation="METTPQPIVTVGDVRFGNQLPFALIAGPCQIESAAHALECASAL
                     KEICGKLGVGLVFKSSFDKANRTSISGKRGVGLDASLQIFADIKSRLGLPLLTDVHER
                     EQCAPVAQVVDVLQIPAFLCRQTDLLIAAAETGAAVNVKKGQFLAPWDMKNVLAKITQ
                     SGNPRVLATERGTSFGYNTLVSDFRGLPIMAGFGAPVIFDATHSVQQPGGQGSSSGGQ
                     REFVAVLARAAVAVGVAGLFIETHPDPDNAPSDGPNMVALRDFPALVEGLMQFDAVAK
                     RQAAQG"
BASE COUNT          283 a          562 c          526 g          297 t
ORIGIN      
        1 tttcgatgtc atctcgacga tgccttggct aagcggcatg tctttcgtca caagcggcag
       61 ctcattgcct ttatgcatca actgtccggc ggtgaggagc tgcgccccga gcttgccccc
      121 cggatgatat tgccggaaat catgcggcga aaacccgcgc cgctccagca gcagcaccgc
      181 caacgcatcg ccggcgacga gttgcatggt ggtgctggtg gtcggcgcca ggccgttggg
      241 gcaggcctcc tcggcggcgg gcagaaacag cccgatatcg gcagcacggc caagcgctga
      301 atcaggccgc gacgttatgg cgatcagctt gatgccaaag cgcttcgtgt aggtgatgat
      361 attggccagc tccggcgcct cgccggacca ggacagagcc agcaccacgt cctgcggcat
      421 gatcatgccg agatcgccat ggctcgcttc agccggatgc acgaaatggc tatgcgtacc
      481 ggtgctggcg agcgtcgcgg caatcttctt gccaatatgc ccggacttgc ccatgccggt
      541 gacgacgaca gcgccgcccg cctcctcgat gacgcgcacg ctggcgagaa acgccgccgc
      601 cagcccgttg cccagcgccg cgcgcatctc ctgcagcccg tgcagttccg tctcgattgt
      661 cttctcgagg cgcgcgatcg ccgccgcgtc gctcagcgcc gcgttcatcc ctgcgcggcc
      721 tggcgcttgg ccacggcgtc gaattgcatc agtccctcaa ccaacgccgg gaaatcgcgc
      781 agcgccacca tgttggggcc gtccgacggc gcattatccg ggtccgggtg ggtctcgatg
      841 aacagcccgg ccacgcccac cgccacggcg gcgcgcgcca gcacggcgac gaattcccgc
      901 tgcccgccgg aggagctgcc ctgcccgcct ggctgctgca cggaatgggt ggcgtcgaaa
      961 atcaccggcg cgccgaaccc ggccatgatg ggcaggccgc ggaaatcgga gaccagggtg
     1021 ttatagccga agctggtgcc gcgctcggtc gccagcacgc gcggattgcc cgactgcgtg
     1081 atttttgcca gcacattctt catatcccac ggcgccagga actggccttt cttcacattc
     1141 accgcagcac ccgtctcggc ggcggcgatg agcaggtcgg tctggcggca caggaaagcg
     1201 gggatctgca gcacgtccac cacctgcgcc acgggggcgc attgctcgcg ctcatgcaca
     1261 tcggtgagca gcggcaggcc gagccggctc ttgatgtcgg caaaaatctg caggctcgca
     1321 tccagcccca cgccgcgctt gccggagatg ctggtgcggt tggccttgtc gaaggagctc
     1381 ttgaacacca gcccgacccc tagcttgccg cagatctcct tgagcgcgct ggcgcactcg
     1441 agggcatggg ccgcgctctc aatctggcaa ggcccggcaa tgagggcgaa cggcaactga
     1501 ttgccaaagc gcacatcacc caccgtgacg atgggctggg gcgttgtctc cattttatcc
     1561 atggcggcat ggctatcgca gcggggcatt tttgtctatt cgcgggcggt ttgtggtttt
     1621 ggtaccttgc cattcccaca gattcccgca aactgcgccg atggcaga
//
LOCUS       DASQCV010000306         2703 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_398069, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000306 DASQCV010000000
VERSION     DASQCV010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2703
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_398069"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..775)
                     /locus_tag="VEQ16_04595"
     CDS             complement(<1..775)
                     /locus_tag="VEQ16_04595"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF014656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HYP63140.1"
                     /translation="MRRSGRILLLLMAVLVTLRVGQEAVRQAYTAPGIAQSATDVFVT
                     AGGSHGAAEELAKAGVVQYPLVFRAASYFTRGQGPLRTGEYMVPARASIAEILQLLRH
                     GPQVEHQVTIPEGLTGAEIAAILNAAPLAMGQVAAPAEGSVLPQTYNYLWNTPRDAIL
                     RRAQNAMQAGLDVAWPKRDADVPLNSGQDAIILASIVQAEAKLPAEMPHIAGVYENRL
                     RQGMKLQADPTVIYAVTDGAKVGGVALHEADMGNPSPYNT"
     gene            complement(784..2046)
                     /gene="fabF"
                     /locus_tag="VEQ16_04600"
     CDS             complement(784..2046)
                     /gene="fabF"
                     /locus_tag="VEQ16_04600"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HYP63141.1"
                     /translation="MRRVVVTGMGIVCPLGVGVEHVWKRLINGESGITAVTHFDTTEL
                     TAKIAGQVPAGSRAEGGLDLAEWMPVKEIKKMDRFIHLGIAAASMAIEDSGWESQSEE
                     DKYAAGVMIGSGIGGLQTIYDASITVHEGRAKRLSPFFIPSALINLISGQVSIKYGLK
                     GPNHSAVTACATGVHAIGDAARLIAFGDADIMVAGGAEAAVNPLGIAGFCAARALSTD
                     FNDNPSAASRPWDKDRDGFVMGEGSGVVVLEEYEHAKKRGAKIYAEIGGYGMSGDAYH
                     ITAPAEHHDGAFRAMKAAFKNGGLTPADVQYVNAHGTSTPAGDDLELEAVENMFGNHA
                     SQIAMSSTKSAVGHLLGAAGAVEAIFSILAIRDNVAPPTLNLHEPSRVSVIDRVALKA
                     QERKIDVALSNSFGFGGTNASILFKRAS"
     gene            complement(2086..2325)
                     /locus_tag="VEQ16_04605"
     CDS             complement(2086..2325)
                     /locus_tag="VEQ16_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HYP63142.1"
                     /translation="MSEIADKVKKIVVEHLGVDEGKVTPEASFIDDLGADSLDTVELV
                     MAFEEAFGVEIPEDAAEKITTVKDAVEYIEKQKAE"
     gene            complement(2515..>2703)
                     /locus_tag="VEQ16_04610"
     CDS             complement(2515..>2703)
                     /locus_tag="VEQ16_04610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019090256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP63143.1"
                     /translation="FIETPMTDALSEAQRSDLSGKIPLGRLGQPGDIAAAVVYLAADE
                     AGWVTGSTIHVNGGMAMI"
BASE COUNT          493 a          889 c          821 g          500 t
ORIGIN      
        1 aggtattgta gggcgaagga ttgcccatgt ccgcctcatg cagcgccacg ccgcccacct
       61 tcgcgccatc cgtcacggca tagatcaccg tcgggtcagc ctgtagcttc atgccctggc
      121 gcagcctgtt ctcgtacacc ccggcaatat gcggcatctc ggcgggcagc ttggcctcgg
      181 cctgcacgat ggaggccagg ataatcgcat cctgcccact gttcagcggc acatccgcat
      241 cccgcttcgg ccaggccacg tccagccccg cctgcatcgc gttctgggcg cggcgcagaa
      301 tggcgtcgcg cggcgtgttc caaagataat tataggtctg cggcagcacg ctgccctccg
      361 ctggcgccgc cacctgaccc atggccaaag gcgcggcgtt gaggatggcg gcgatttcag
      421 cccccgtcag cccctcgggg atggtcacct gatgctccac ctgcggccca tggcgcagga
      481 gctgcaaaat ctcggcaatg gaggcgcggg ccgggaccat atattcgccc gtgcgcagcg
      541 gcccctggcc gcgggtaaaa taggaagccg cgcggaagac gagcgggtac tgaacgactc
      601 ccgccttggc cagctcttcg gccgcgccat ggctgccgcc cgccgtcacg aaaacatccg
      661 tggcgctctg tgcgattccc ggcgcggtat aagcctggcg cactgcctcc tgccccacac
      721 ggagcgtgac cagcacggcc atgaggagca gcaatatgcg gccggaacgg cgcaagacga
      781 ggcttaagag gcgcgcttga acagaatcga ggcgttggtg ccgccaaagc caaagctatt
      841 ggacaaggcc acgtcaatct tccgttcttg cgccttcagc gccacgcggt cgataaccga
      901 cacgcggctg ggctcatgca aattcagcgt cggcggcgcc acattgtcgc ggatggcgag
      961 gatggagaaa atcgcctcca ccgcgccggc ggcgcccagc agatgcccca cggccgattt
     1021 ggtcgaggac atggcgatct ggctggcatg gttgccgaac atattctcga ccgcctccag
     1081 ctccagatcg tcgcccgcgg gcgtcgaggt gccgtgcgcg ttgacatact ggacatccgc
     1141 aggcgtcagg ccgccattct tgaaggccgc cttcatggcg cggaaggcgc cgtcatgatg
     1201 ctcggctggc gcggtgatgt ggtacgcatc tcccgacatg ccgtagccgc caatttcggc
     1261 atagattttc gcgccgcgct tcttggcgtg ctcatactct tcaagcacga caacgcccga
     1321 accttcgccc atgacgaacc cgtcgcggtc cttgtcccag gggcgggaag cggcagaggg
     1381 gttgtcgttg aaatcggtcg aaagggcgcg cgccgcgcag aagccggcaa tgccgagcgg
     1441 gttcaccgcc gcctcggcgc cgcccgccac catgatgtcg gcatcgccga acgcgatcag
     1501 ccgcgccgca tcgccaatgg catgcacgcc ggtggcgcag gccgtgacgg cggagtggtt
     1561 ggggcccttc agcccgtatt tgatggaaac ctggccggag atgagattga tgagcgccga
     1621 ggggatgaag aagggcgaga ggcgcttggc gcggccctca tgcaccgtga tcgaggcgtc
     1681 atagatggtc tgcagaccgc caatgccgga gccgatcatc acgccggcgg cgtatttatc
     1741 ttcctcgctc tgcgattccc agccggaatc ctcgatggcc atggaggcgg cagcaatgcc
     1801 aagatggata aagcgatcca tcttcttgat ttccttgacc ggcatccatt cggcgaggtc
     1861 gagcccgccc tccgcccggg agcccgcggg cacctggccc gcgattttgg ccgtcagctc
     1921 cgtggtgtcg aagtgggtga cggctgtaat cccggattcc ccgttaatca gcctcttcca
     1981 gacatgttcg acccctaccc ccaatgggca gacgatcccc attccggtta cgacaacacg
     2041 gcgcatggca actcctcgga cggcttagct agctgagcgc gggccttact cggccttctg
     2101 cttctcgata tattcgacag cgtccttgac ggtcgtgatt ttttcggcgg catcctcggg
     2161 gatttccacg ccgaaagctt cctcgaacgc catcaccaac tccaccgtat ccagcgagtc
     2221 agcgcccaga tcgtcgatga aggaagcttc aggggtcacc ttgccttcgt ccacgccgag
     2281 atgctcgaca acaatcttct taaccttgtc ggcgatttcg ctcataaaat tcactttcct
     2341 gcaaactggt ttggtagaga acggcgcgac cttagcaccg gcttgagatt atcgctaacc
     2401 taggcggcag ttatccaccg tccagacgtg agccgacgcg gcgcttagca tggttttttg
     2461 cgtcacgcca agccgggtag cgcatggctc aaatcgtcac gcttatgcgt gcccttaaat
     2521 catcgccatg ccgccattca catgaatggt cgagccggtg acccagccgg cctcgtcagc
     2581 ggccagataa accacggccg cggcaatgtc gccaggctgg ccgagccggc cgagcgggat
     2641 cttgcccgag aggtcggaac gctgcgcctc gctcagcgca tcggtcatcg gcgtctcgat
     2701 gaa
//
LOCUS       DASQCV010000307         3112 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1559650, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000307 DASQCV010000000
VERSION     DASQCV010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1559650"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..651
                     /locus_tag="VEQ16_04615"
     CDS             <1..651
                     /locus_tag="VEQ16_04615"
                     /inference="COORDINATES: protein motif:HMM:NF015523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MltA domain-containing protein"
                     /protein_id="HYP63144.1"
                     /translation="LAALPRQAIDDNGLYRKAPVTAYLSNPVDAFMLQIQGSGRILLP
                     NGKTLRVGYDGDNNQPYTPIGRLLVQNGDLQQGDVSFQTISAWLKDNPVQARAFMEQN
                     ANYAYLRPLGPLPDNEGAPGTLGVPLTAGRSIAMDKAVVPLGTPVFVDTTDPITNTPI
                     QRLTITQDRSGGIQGANQADLFFGAGPDAEATAGSMREPGQLYILLPNPSAAQPSQ"
     gene            721..2607
                     /locus_tag="VEQ16_04620"
     CDS             721..2607
                     /locus_tag="VEQ16_04620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HYP63145.1"
                     /translation="MVSPTQESSQARLRIGALVGVLGVVYGDIGTSPLYSLQTCLSYF
                     TGGILRQVDILGLLSLITWALIITVTLKYVTFIMRADNNGEGGTLSLMALANRVSRSD
                     RTRHVLALVGIVGAGLFFGDGVITPAISILSAVEGMTVVSPATGHLVLPISLFVIVLL
                     FLVQRHGTGNVGRAFGPIMVVWFLTIGILGLAKIVLHPFVLTAISPYYGILFVIHHDT
                     LAFVTLGAVVLAVTGAEALYADMSHFGKKPIRVSWLFFVLPCLLMNYYGQGALVISDP
                     SSADNPFFKLAPHVLQVPMVILATMSTIIASQSVISGAFSVSRMCVQLGLLPRMEIRH
                     TSSLERGQIYVPQINTILAIGVILLVLSFRSSNALASAYGIAVTGTFLCDNALAAFVF
                     RRQFGWSRLAVFAVFGSIGIADFAFFSANSLKFFEGGWVPLAIGCSIILIMTTWRRGR
                     GLIIARWVQDSLPLTSFLARLPQSRIVRVPGIAVFMTSNLDFVPNALLHNLKHNKVLH
                     EQVLFVTVRNLDVPQAEPNARVKAEEAAPGIYKITLSYGFMESPNVPRELESLNDQGI
                     EFKPMQASYFLGRETVVPASVSKLRFIRRWLFLYMSRNAISATEFFRIPSDRVVELGV
                     RIAV"
     gene            complement(2637..>3112)
                     /locus_tag="VEQ16_04625"
     CDS             complement(2637..>3112)
                     /locus_tag="VEQ16_04625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HYP63146.1"
                     /translation="LLPEADVARLAALVAAGAPADPLLRLAALWRGDVAAFAARWRLS
                     TAEAERLAGLVVPNELRPADDDAALRRALVEVPGAVLVDRTWLGGGTGADWAGLRARL
                     LTMERPVFPLQGRDLVALGAPVGPEMGETLRALRSWWLEGGCVADAAMLLARVKR"
BASE COUNT          525 a         1221 c          804 g          562 t
ORIGIN      
        1 ctcgccgccc tgccgcgcca agccatcgac gacaacggcc tctaccgcaa ggcgccggtc
       61 acggcctatc tttccaaccc ggtcgatgcc ttcatgctgc agatccaggg ctccggccgc
      121 atcctgctgc ccaacggcaa gaccctgcgc gtcgggtatg acggcgataa caaccagccc
      181 tacaccccga tcggccgcct cctggtgcag aatggcgacc tccagcaggg cgatgtcagc
      241 ttccagacca tctccgcctg gctgaaggat aaccccgtcc aggccagggc tttcatggag
      301 cagaacgcga attacgccta tctgcgtccg ctcggccccc tgccggacaa tgaaggcgcc
      361 cccggcacgc tcggtgtgcc gctcaccgcc ggccgctcga tcgccatgga caaagccgtc
      421 gtcccgctcg gcacgccggt cttcgtcgac accacagacc ccatcactaa cacccccatc
      481 cagcgcctca ccatcaccca ggacaggagc ggcggcatcc agggcgccaa ccaggccgat
      541 ctcttcttcg gcgccgggcc cgatgcagag gccacggcag gctccatgcg ggagccgggc
      601 cagctctata tcctgctgcc caacccgtct gcggcccagc catcacaata gcctcacttg
      661 cggccaaggg ggcgaacggc tacagccggg ccccatggca acattgcggt ctccgtaatc
      721 atggtctccc ctacacaaga gtcttcccag gcgcggcttc gcatcggcgc gctcgtcggt
      781 gtactcggcg tcgtttacgg cgatatcggc accagcccgc tctactcgct gcagacctgt
      841 ctcagctatt tcacgggcgg catcctgcgc caggtcgaca ttctcggcct gctatccctc
      901 atcacctggg cgctcatcat caccgtcacg ctcaaatatg tcaccttcat catgcgggcg
      961 gacaataacg gcgagggcgg cacgctgtcc ctcatggcgc tcgccaaccg cgtctcccgc
     1021 agcgaccgta cccgccatgt gctggccctg gtcggcattg tcggcgccgg cctgttcttc
     1081 ggcgacggcg tcatcacccc ggccatctcc atcctgtccg cggtcgaagg catgaccgtc
     1141 gtatcccccg ccacgggcca tctggtactg cccatctcgc tgttcgtcat cgtgctgctg
     1201 tttcttgtgc agcgccatgg caccggcaat gtcggccgcg ccttcggccc catcatggtg
     1261 gtctggtttc tcaccatcgg catccttggc ctggccaaaa tcgtcctgca ccccttcgtg
     1321 ctcacggcca tcagccccta ttacggcatc ctcttcgtca tccatcacga cacgctggcc
     1381 ttcgtcacgc tcggcgccgt cgtgctggcc gtcacgggtg ccgaggcgct ctatgccgac
     1441 atgagccatt ttggcaaaaa acccatccgc gtcagctggt tgttcttcgt cctcccatgc
     1501 ctgctgatga attattacgg ccagggcgcg ctggtcattt ccgacccctc cagcgccgac
     1561 aaccccttct tcaagctggc cccgcatgtg ctgcaggtgc cgatggtcat cctcgccacc
     1621 atgtcgacca tcatcgccag ccagtccgtc atcagcggcg ccttctcggt ctcgcgcatg
     1681 tgcgtgcagc tcggcctctt gccgcgcatg gaaatccgcc acaccagctc cttggagcgg
     1741 gggcagatct atgtgccaca gatcaacacc atcctcgcca tcggcgtcat cctgctggtc
     1801 ctcagcttcc gctccagcaa cgccctggcc tcggcctacg gcatcgccgt taccggcacc
     1861 ttcctgtgcg acaacgccct ggccgccttc gtcttccgcc gccagttcgg ctggtcccgc
     1921 ctggcggtct tcgccgtctt cggctccatc ggcatcgccg atttcgcctt tttctccgcc
     1981 aattccctga aattcttcga aggcggctgg gtgccgctgg ccattggctg cagcatcatc
     2041 ctcatcatga caacatggcg ccgcggccgc ggcctcatca tagcgcgctg ggttcaggat
     2101 tccctgcccc ttacctcctt cctcgcccgc ttgccgcaat cgcgcatcgt ccgtgttccc
     2161 ggcatcgccg tgttcatgac cagcaatctg gacttcgtcc ccaacgcgct gctgcataat
     2221 ctcaaacata acaaggtgct gcacgagcaa gtgctgttcg tcacggtccg caacctcgac
     2281 gtcccgcagg ccgagcccaa tgcccgcgtc aaagccgagg aagctgcccc cggcatctac
     2341 aagatcacgt tgagctatgg cttcatggaa agccccaacg tcccgcgcga gctggaaagc
     2401 ctcaacgacc agggcataga gttcaagccg atgcaggcca gctatttcct cggccgcgag
     2461 acggtcgtgc cggcctccgt gtccaaactg cgcttcatcc gccgctggct gttcctgtac
     2521 atgtcgcgca acgccatctc cgcgacggaa ttcttccgca tcccgtcgga ccgcgtggtc
     2581 gaactcggcg tccgcatcgc ggtttaagaa aggccagggc agagccctgg cctttcttac
     2641 cgcttaaccc gcgccagcaa catcgccgca tcagccacgc acccgccctc cagccaccag
     2701 ctccgcaacg cccgcagcgt ctcacccatc tccggcccaa ccggcgcgcc gagcgccacc
     2761 aaatcccgcc cctgcaacgg aaaaaccggc cgctccatgg tcaaaagccg cgcccgcagc
     2821 cccgcccaat ccgcgccagt gccgccgccc agccaggtcc ggtccaccag cacagcaccc
     2881 ggcacttcca ccagcgcccg gcgcaacgcc gcatcatcat ccgccggccg caattcattc
     2941 ggtacaacca gccccgctag acgctcagcc tcggccgtgc tcagccgcca gcgcgccgca
     3001 aacgctgcaa catccccccg ccacaaagcc gccaggcgca aaagcgggtc cgccggcgcc
     3061 ccagccgcca ccagcgccgc cagacgcgcc acatccgcct ccggcagcaa ta
//
LOCUS       DASQCV010000308         2046 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1725817, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000308 DASQCV010000000
VERSION     DASQCV010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1725817"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1015)
                     /locus_tag="VEQ16_04630"
     CDS             complement(<1..1015)
                     /locus_tag="VEQ16_04630"
                     /inference="COORDINATES: protein motif:HMM:NF024750.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HYP63147.1"
                     /translation="MKLNATSLRSLTLPRGKKDHIAWDDDIPGFGVRLREGGSAGFVF
                     QYQIGAKQRRMSLGAISAVPIGNARKTAEKLYARVRLGQDPAGESAGAKFKSGETFGA
                     IAQRYLARQRTRLRPRSYSEIERHLLKHSRALHGLQLEKITRRDVAAVISAVAETSGP
                     VTGNRVRTSLSCFFVWAIREGLIEANPAANTNKAPEQPRQRALAPEELAIVWAHAGDG
                     HYGDIIKLLTLTGARANEIAALRWSEIQGDTIVLPPERVKNGRGHEIPLSTAARQIIE
                     AQSRRIGDDGAPRDLIFGNGAGGFTGWFRAKRDHDARIAKTRRCRTGLPTICGGAFQP
                     MPTS"
     gene            1246..>2046
                     /locus_tag="VEQ16_04635"
     CDS             1246..>2046
                     /locus_tag="VEQ16_04635"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000030 - mannosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006493 - protein O-linked glycosylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid carrier-dependent
                     glycosyltransferase"
                     /protein_id="HYP63148.1"
                     /translation="MASHARAIAVLLAVALLAFLPGFFSIPPIDQDEARFAQATKQMV
                     ESGDYVDIRFQDEVRYKKPVGIYWLQAGVVKAASALGFPHALSTIWLYRIPSLVGAIG
                     AVLLTYWAALAFVSRRAALLAGLMMASCLLLGGERLLAKTDAMLLLTVVAAMGAMARA
                     YLPLRDHSPGAPANWPLAAVFWTALAAGVLLKGPLILMVVGLAAVSLAIADRSAQWLL
                     RLKPLAGTAWFAVLVVPWFAAILGRAGGEFVAGSVGQDLLGKLLGAQET"
BASE COUNT          317 a          633 c          654 g          442 t
ORIGIN      
        1 agctcgttgg catgggttga aaagctcctc cgcaaatcgt ggggagtcca gtgcggcagc
       61 gccttgtctt ggcaatccgc gcatcgtgat cacgcttggc ccggaaccag ccggtgaagc
      121 caccggcgcc attgccgaag atcaaatctc ggggggcgcc gtcgtcacct attcgtcgcg
      181 actgtgcttc aatgatctgg cgcgcggctg tggatagggg gatttcatgt ccgcgcccat
      241 tcttcacacg ctctggcggc agcacaatgg tgtcgccctg gatttcactc cagcgcagcg
      301 ccgcaatctc atttgcgcgc gcgccggtga gcgtaagcag tttgataatg tcgccataat
      361 ggccgtcacc ggcatgggcc cacacgatgg cgagctcttc gggcgcgagc gcgcgctgcc
      421 ttggctgctc aggtgctttg tttgtgtttg cggccggatt ggcctcgatc agcccttccc
      481 ggattgccca cacaaaaaag caggaaagcg atgtacgcac gcggttgccg gtgacgggac
      541 cgctggtctc ggccactgcg gaaataacgg cagcaacatc gcgtctcgtt atcttctcca
      601 attgtagccc gtggagcgcc ctgctgtgct tgagcaagtg gcgctcgatt tccgaatacg
      661 accttggccg cagccgggtg cgctggcggg caaggtagcg ctgcgcgatg gcgccgaatg
      721 tctctcctga tttgaatttc gcgccagcgc tttcgccggc cggatcctgc cctagcctca
      781 cgcgcgcata cagtttttcg gcggtcttgc gcgcgttgcc gatcggcaca gcggatattg
      841 cgccaagact catccggcgc tgcttggcgc cgatctgata ctgaaacaca aagccggctg
      901 atccgccttc gcgcagcctg acgccaaagc cggggatatc gtcatcccaa gctatatggt
      961 cttttttgcc tctcggtagc gtcaacgagc gtagcgatgt agcattgagt ttcatgactg
     1021 ttggctcatt gggaaggcca tgggaaggtt tgggaaggcc gcgcccggcc agcgatggcc
     1081 gcatagactg ttcgtctacg agcgattcct gatatttaca agcacattgt ccacaggtgt
     1141 cttctcttgg ccggggcaaa aactgtgaac atgactgtta ccgcgggcga gcatagtggc
     1201 aaagccgcgc cgaggcgcgg ccttggcacg atcgttgatt tcgccatggc ctcccatgcc
     1261 cgtgcgatcg ccgtgctgct cgcagttgcg ctgctcgctt tcctgcctgg gtttttcagc
     1321 atcccgccga tcgatcagga cgaggcgcgc tttgcgcagg cgaccaaaca gatggtggag
     1381 agcggcgact atgtcgatat ccgcttccag gacgaggtgc gctacaaaaa gccggtcggc
     1441 atctactggc tgcaggcggg cgtcgtgaag gcggcaagcg cgctcggctt cccgcacgcg
     1501 ctctcgacta tctggctcta tcgcattccc tcgcttgtgg gcgccatcgg tgctgtgctg
     1561 ctcacgtact gggcggcgct ggcgttcgta tcgcggcgcg ccgccctgct cgcaggcctg
     1621 atgatggcga gctgcctgct gctcggcggc gagcggctgc tggccaagac cgacgctatg
     1681 ttgctgttga ccgtggtggc cgccatggga gccatggcgc gcgcctatct tcccttgcgg
     1741 gatcattcac ccggagcgcc ggccaattgg ccgctcgcgg ccgtattctg gactgcgctc
     1801 gccgccggcg tgctgctgaa aggcccgctg atcctgatgg tggtcgggct tgccgccgtg
     1861 tcgctcgcca ttgccgatcg ctccgcgcaa tggctgctgc ggctcaagcc gcttgccggg
     1921 actgcctggt ttgcggttct ggtcgtaccc tggtttgccg ccatcctcgg acgcgccggc
     1981 ggcgagttcg tggccggctc ggtcggccag gatctgctcg gcaagctttt gggagcgcag
     2041 gagacc
//
LOCUS       DASQCV010000309         1517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_67540, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000309 DASQCV010000000
VERSION     DASQCV010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67540"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            345..>1517
                     /locus_tag="VEQ16_04640"
     CDS             345..>1517
                     /locus_tag="VEQ16_04640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63149.1"
                     /translation="MADPVQEAAMTTLRHAMLRSSSLIAVLAILSVTGGSAAEPQRYD
                     FSGYLAEGYRQMADVAERSEGHAAFAAYFEQRRTLAVHRRSIRPEALDGRNLDAFTLR
                     EATFARRQLVARLDAGARQSQPLLAAIAQVNFDCWVAPLPKQVGVPDGDECRRRFYFA
                     FAGLVPAPPGQLPGAPTPSVPLESVQVASTAPPKVIVNPPTAPAASVSGPTAATTPAP
                     SACAESCVALAFIGPAADELIDKLRSGVQSARAADSGSRDTARQTLGAGTTTSARTTG
                     SPPGGAAAGQGSSAATSGSGAASASGDGASSGSAASAGGSTDGGAGGTAGGSSAGGNS
                     AAAGGSDSGSASPSGGPASGSSSGSSSGGPASGSGAGSGSSSSGSSVSNSGSNSSSG"
BASE COUNT          264 a          530 c          493 g          230 t
ORIGIN      
        1 ctcacccagc atagaggtga gccaattcgt cgcaccatgg catatgattg ttggcgaatt
       61 actgcgaact acagcgagct atagtgaata aatggcctcg cgcttctcca gcgcccttcc
      121 aggtaaaatc ccgccacgac ccacaatgcc gcgcgctccg cttcactcag agtccgtttg
      181 agaatgcgct tcggcgagta aattgagcca aattgaatgg cgtaggcctc gccgccgtac
      241 acgcgaaacg gcgggaaacc gccaatcttg atgagatacg tcacccggct gtgtgcatct
      301 cgactgtccg gggcgcattc tcaaacggac tcttaggacc ttcgatggca gatccggtcc
      361 aggaagcagc catgacaacg cttcgacatg caatgctccg ttcgtcctcc ctcattgccg
      421 tgctcgccat cctctcggtg accggcggtt cggcggcaga gccgcagcgc tacgacttca
      481 gcggctatct ggcggaaggc tatcgccaga tggccgatgt agccgagcga agcgaggggc
      541 atgccgcgtt cgccgcctat ttcgagcagc gccgtaccct ggccgtccat cgacgctcga
      601 tccgtcccga agccctcgat ggcaggaatc tcgacgcctt caccctgcgg gaggcgacct
      661 tcgcgcgtcg ccagctcgtc gcgcggctcg atgccggcgc acggcaaagc cagccgctgc
      721 tggcggcgat cgcccaagtc aacttcgact gctgggttgc cccgctcccg aagcaggtcg
      781 gagtgcccga cggcgacgaa tgccgccggc gcttctactt cgccttcgcc ggccttgtcc
      841 cggccccgcc tgggcagctg cctggcgctc cgacgccgag cgtccctctc gaatccgtgc
      901 aggtcgcttc gacggcgccc ccgaaagtga tcgtcaatcc gcccacagca ccggcagcct
      961 cagtatccgg gccgacagcg gcaacgaccc cggcaccgag cgcctgcgcc gaaagttgtg
     1021 tggcgctcgc gttcatcggc cctgcggcgg atgagctgat cgacaagctg aggtctggcg
     1081 tgcagagcgc gcgcgccgca gacagcggat ctcgtgacac cgcgcggcag acgcttggcg
     1141 ctggcaccac gacctccgcc aggaccaccg gttcgccgcc gggcggcgcc gccgccggcc
     1201 aaggctcctc cgctgcgacg tccggctctg gagcagcgag tgcaagcggc gatggcgcca
     1261 gcagcggaag cgccgccagc gccggcggtt cgacggacgg cggagccggg ggcacagcgg
     1321 gtggcagcag cgctggcggc aactccgctg ccgcgggggg gagcgacagc ggctccgcca
     1381 gcccaagcgg gggccctgcc agcggaagca gttccggcag cagcagcggt ggcccggcca
     1441 gcggaagcgg agctggtagc ggcagctcga gcagcggaag ctcggtcagc aacagcggtt
     1501 ccaacagcag cagcggc
//
LOCUS       DASQCV010000310         1751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3052372, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000310 DASQCV010000000
VERSION     DASQCV010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3052372"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VEQ16_04645"
     CDS             complement(<1..232)
                     /locus_tag="VEQ16_04645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63150.1"
                     /translation="MADDTEDLTPFMEHGADYVAAKGAAGAFDPATYGPKQDVKQLPA
                     WMRDATIAPPGVVDALNDAPTDGSKSGSGKFDD"
     gene            complement(234..>1751)
                     /locus_tag="VEQ16_04650"
     CDS             complement(234..>1751)
                     /locus_tag="VEQ16_04650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63151.1"
                     /translation="FLSDLLEGNFGNLGTDILHAPESLARHPDQIAELAGAIALPFAA
                     PEILGALGAGDVLGGLGGDLAGSAAAGLGETVGAEAVPAGVEAASLAGLGDVVGTAGE
                     QALAFAPTAADFAGTAPAIGELGTAGAAGTTAGLPALAGPATASIAAPSEILAGDPAI
                     SAALDTAAPDLGTAAIDTAPTTSEFATAANPAVASDATGAAPAVNTGAVDTFAGQPPA
                     ELAAGSAPGPNAIASGAADVPGAVPGNVSETVASAEAPAIGQAAAEGGPSSSAIVDAA
                     QAGGAAAAAPESFLSSIGGGLKTLGGIASNPLAQLAVPGGFLAYNLLKGPPGIPPQAQ
                     QALANAQSNLGPLQGKATQNTDLFNTTAATDLNLANNFQVSPAQAAQLEIYKQDQYNQ
                     LRQQIANQNPGGQIENSSQWIQGKAQIDQQVIAQQTQMINQLIQTAFQASTAANAGLS
                     TSANITAQYDNLFMQAANLQVQQDQAFNTALAGALQSFGLIAGLQGGNIAKSRAA"
BASE COUNT          295 a          557 c          582 g          317 t
ORIGIN      
        1 tatcgtcgaa tttgccgctg ccgcttttac tgccatcagt cggcgcatca ttaagtgcat
       61 ctaccacccc cggcggggca attgtggcat cgcgcatcca agccggcagt tgcttgacat
      121 cctgtttggg accataagtg gctgggtcga aagcgcctgc cgcgcccttg gcggcgacgt
      181 aatcggcgcc gtgttccatg aaaggagtca gatcttcggt gtcgtctgcc atgttatgcc
      241 gcccgtgatt tggcgatgtt gccgccctgc agaccggcga tcagaccgaa cgactgcagc
      301 gcgccggcaa gcgccgtatt gaatgcctga tcctgctgca cctgcaagtt cgccgcctgc
      361 atgaacagat tgtcgtattg cgcggtgata ttggccgagg tcgacagccc ggcattggcg
      421 gcggtcgagg cctggaacgc ggtctggatc aattgattga tcatctgcgt ctgctgggcg
      481 atcacctgct ggtcgatctg cgccttgccc tggatccact gcgaggaatt ctcgatctgg
      541 ccgccggggt tctggttggc gatctgctgg cgtagttgat tatactgatc ctgtttatag
      601 atctccaatt gcgccgcctg cgcgggcgac acctggaaat tattggccag attgagatcg
      661 gtggcggcgg tggtgttgaa cagatcggtg ttctgcgtcg ccttgccctg caacggtccg
      721 agattggact gggcattggc cagcgcctgc tgcgcctgcg ggggaatgcc gggaggtcct
      781 ttgagcaaat tataagccag aaagccaccg ggcaccgcca attgcgccag cgggttactg
      841 gcaatgccgc ctaaagtctt gaggccaccg ccgatcgagg agagaaacga ttcgggggca
      901 gccgctgccg caccacccgc ctgcgccgca tcgacgatgg ccgaagatga cgggccgccc
      961 tccgccgccg cctgaccgat cgcgggggct tcggccgagg ccacggtctc cgagacattg
     1021 ccgggcacgg cacccggtac atcggcagcg ccgctagcaa tggcattggg tcccggcgcc
     1081 gatccggcgg ccagttcggc cggtggctgg ccggcaaaag tatcgaccgc accggtattg
     1141 accgccgggg ccgcgcccgt ggcgtcgctg gcgaccgccg ggttggcggc ggtagcaaat
     1201 tcagaggtgg tgggggcggt gtcgatcgcg gccgtgccca gatccggcgc tgccgtatcg
     1261 agcgcagcgc tgatcgctgg gtcgccggcg aggatttccg aaggggcggc aatgctggcg
     1321 gtggccggcc ctgccaaggc cggcaatccc gccgtggtac cggcggcacc agcggtaccc
     1381 agttcaccga tggccggggc agtgccggca aaatccgctg ccgtaggcgc gaaggccagg
     1441 gcttgctcac cggccgtgcc cactacgtca ccgagcccgg ccaggcttgc ggcctcgact
     1501 ccggccggta ccgcctcggc accaacggtt tcacccagac cggcggcagc gctaccagcg
     1561 agatcaccgc caagaccgcc gagcacatcg cccgccccca gggcgccgag aatttccggg
     1621 gcggcaaacg gcagcgcaat ggccccggcc agttcggcaa tctgatcggg gtggcgcgcc
     1681 agcgattccg gcgcatgcag gatatcggtg cccagattgc cgaaattgcc ttccaacaaa
     1741 tcactgagga a
//
LOCUS       DASQCV010000311         2606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_399061, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000311 DASQCV010000000
VERSION     DASQCV010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399061"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VEQ16_04655"
     CDS             <1..240
                     /locus_tag="VEQ16_04655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63152.1"
                     /translation="TGAIGGISGPTAAGNGSAFPFPQPNYRFNACPIGSVNCIVLPVE
                     TLPPANPLQNFDVSEHKKRRLNANVSLPGIATRDY"
     gene            268..>2606
                     /locus_tag="VEQ16_04660"
     CDS             268..>2606
                     /locus_tag="VEQ16_04660"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP63153.1"
                     /translation="MVVRIARLGMGLVLGLALASCARPLQSAYENTTGTQNASGIPVG
                     QNSAGESCTLDRNGSSAAIYCGSWDQPSAQVSQGGAASAADLPNLAATSAWRASLEAS
                     YQCNAPSPATIMGGVPAELLSCTQRFGGWPHAALAAIIDGNVYYADGVAPALAPMQRA
                     IGVLSGRVPAAQAADVPLTQADQALAQHLAAQAFSAGDVRQYDALMTLGAKANQAEDF
                     PSAVIAYRAALALQQKKLGDNNPGTMAPLLELALNLSDQGQYAAAQSRFTAASALAPR
                     SSDPTAGAKLLHYEGLDQLNQNHPVQALTLLRQADTAYAALLPQEVLQASPQGAANNA
                     EFAFSAPAGTQNLLAAQVTLNSPTIQNALLGLIETRRYEAVALLANGDPEGATRAMAA
                     AQRLAEANNIAPPVLDARLSRSGAALDLAQGHSRSASTDLSQAAADFAAAIPGSRPVA
                     ETALLRAAALHDEGRTKDALVECRGGIALLGNLQLGTSAALLGPCLDSFADAAKGDPA
                     HEEALHAEMFQAAELTQGSVTAQEIAAASARLSSSSSNPKVASAIRAQQDAQAHLVSL
                     YQQRDALNQAGNNNAKGLADLDKQIAAANAALSQTEQAEQAAAPNFSQLVQQEVPAKD
                     VLSRLRPDEAFLGITATPRHSWLFFLSAGQVHVAQTNLTDEDMTKLVQAVRASIEPGQ
                     NGLPPFDIADAAKIYGGTLGPFAAQMGDVHELVVAPSGPLLSLPFSLLPTGPASLDDL
                     AHAPWLVRQTTLAYVPAAANFVSLRKVAGTSAAKKPWFGL"
BASE COUNT          437 a          898 c          875 g          396 t
ORIGIN      
        1 accggcgcca tcggcggcat cagcgggcca accgcggcgg gcaatggctc ggccttcccc
       61 ttcccgcaac cgaactacag gttcaatgcc tgtccgatcg gctcggtgaa ttgcatcgtg
      121 ctgccggtgg aaacgctgcc gccggccaat ccgctgcaga atttcgacgt atcggagcat
      181 aagaaacgga ggctcaacgc caatgtctcg ctgcccggca tcgccacgcg cgattattaa
      241 gacgcgatga ttaagatggg gggcagaatg gtggttcgca tcgcgcgtct gggcatgggg
      301 ctcgttctgg ggctggcgct ggcgagctgc gcgcggccgc tgcaaagcgc ctatgagaat
      361 accaccggca cgcagaacgc gtccggcatc cccgtagggc agaacagcgc aggggaaagc
      421 tgcacgttgg accgcaacgg cagcagcgcc gccatttatt gcggcagctg ggaccagccg
      481 agcgcgcagg tgtcgcaggg tggtgccgcc agcgccgcgg acctgccaaa tctcgccgcc
      541 accagcgcct ggcgggcgag cctggaagct tcctaccaat gcaatgcgcc aagcccggcc
      601 accatcatgg gcggcgtgcc ggcggagctg ctctcctgca cgcagcgttt cggcggctgg
      661 ccgcatgcag cacttgccgc aatcatcgac ggcaatgttt attacgctga tggtgtggca
      721 ccagccctgg cgccgatgca gcgtgccatc ggcgtgctga gcgggcgcgt gccggcggcg
      781 caggcagcgg acgtgccact cacccaggcc gaccaggcgc tggcgcagca cctcgccgcc
      841 caggccttca gcgccggcga tgtgcggcaa tatgatgcgc tgatgacgct cggcgccaag
      901 gccaaccagg ccgaggattt tccctccgcc gtcatcgcct accgcgctgc gctggcgctg
      961 cagcagaaga agctggggga taacaatccc ggcaccatgg cgccgctgct ggagctggcg
     1021 ctgaatctct ccgaccaggg gcaatatgcc gcggcgcaga gccgtttcac cgccgcatcg
     1081 gcgctggctc cacgctcaag cgacccgact gcgggtgcca aattgctgca ctacgagggg
     1141 ctggaccagc tcaaccagaa ccatcccgtg caggcactga cgctgctgcg ccaggcggat
     1201 acggcctatg ccgccctgct gccgcaggaa gtgctgcagg cctcgccgca gggcgcggcc
     1261 aataatgcgg aattcgcctt ctccgcgccc gccggcacgc agaatctgct ggcggcgcag
     1321 gtgacgctga acagcccgac catccaaaac gcgctgctcg ggctgatcga gacacgccgt
     1381 tacgaggccg tggcgctgct cgccaatggc gacccggaag gcgcgacacg cgccatggcg
     1441 gcggcgcagc gcttggccga agccaataac atcgcgccgc ccgtgctgga tgcgcgactc
     1501 tcgcgcagcg gcgcggcgct ggatttggcg caggggcata gccggtcggc ctccactgat
     1561 ctcagccaag ccgccgccga tttcgccgcc gccattcccg gctcgcgccc ggtggcggaa
     1621 accgctttgc tgcgcgccgc cgccttgcat gacgagggcc gcacgaaaga tgcgctggtg
     1681 gaatgccgtg gcggcatcgc gctgctgggc aatctgcagc ttggcacctc ggcggctttg
     1741 ctcgggccct gcctggacag cttcgccgat gccgccaagg gcgaccccgc ccatgaagag
     1801 gcgctgcatg ccgaaatgtt ccaggccgcg gagctgaccc agggcagcgt gacggcgcag
     1861 gaaatcgccg ccgcctcggc gcgcctctcc agctcctcct ccaatccgaa agtggcgtcg
     1921 gccatccgtg cccagcagga tgcgcaggcg catctggtca gcctgtacca gcagcgcgat
     1981 gcgctgaacc aggcgggcaa caataatgcc aaggggctcg ccgatctcga caagcagatc
     2041 gccgcggcca atgcagcgct gtcgcagacc gagcaggccg agcaggcggc ggcgccgaat
     2101 ttcagccagc tggtgcagca ggaggtgccg gccaaggatg tgctctcgcg cctgcgcccg
     2161 gatgaggcct tcctcggcat caccgccacg ccgcgccata gctggctgtt cttcctcagc
     2221 gccgggcagg tgcatgtggc gcaaaccaac ctcaccgacg aggacatgac gaagctggtg
     2281 caggcggtgc gcgccagcat cgagccgggg cagaacgggc tgccgccctt cgacatcgcc
     2341 gatgcggcga agatttatgg cggcacgctg gggccgttcg cggcgcagat gggcgatgtg
     2401 catgagctgg tggtggcacc ctccggcccg cttctctctc tgcccttctc gctcctgccc
     2461 accggcccgg ccagtttgga cgacctcgcc catgcgccat ggctggtgcg gcagaccacg
     2521 ctcgcctatg tgccggcggc ggcgaatttc gtttcgctgc gcaaggtggc gggtacctcg
     2581 gcggcgaaga agccgtggtt cgggct
//
LOCUS       DASQCV010000312         2965 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1892261, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000312 DASQCV010000000
VERSION     DASQCV010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2965
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1892261"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..320)
                     /locus_tag="VEQ16_04665"
     CDS             complement(<1..320)
                     /locus_tag="VEQ16_04665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63154.1"
                     /translation="MPALTGMLTRKLIAIDGLPCAGKTTLAYGLRALYGFEILHVDEF
                     LRPEADWPSRKPGFPFPYLRYDEFLTAVTQLAEKGECTYAPFDWETLAVSTKLRHLTT
                     ERPV"
     gene            complement(458..1975)
                     /locus_tag="VEQ16_04670"
     CDS             complement(458..1975)
                     /locus_tag="VEQ16_04670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP63155.1"
                     /translation="MKSLFLPKSLAQRIILILLVGFALIQLLGLLIHTFNQMKLGRLE
                     EEQEFAVRAVIIYRHIALAAPEDRAALLAREPLPKGDTAVLSLAPPVSNTYPMPLPAR
                     EAIRAGMFAYGIPPNIHPHGMMLRVAGDPPRYIISFGLPEDLFFPGDLPPLPGGPPDG
                     GGPFGPGGPGGPPPYGGDGPGITPGQLLAGMLPPPDALLPPVYWLTISSTLPPVAPWR
                     SPGFASAFIVMTLLGAVMITWAVRQLLTPVKTLAAAAEALGRDVANAPPLPETGPSEI
                     VTAAQAFNTMAARVRRFVEDRTFLLTAIGHDLRTPITRLKLRAEYMEDEEQRAKMLAD
                     LDEMEAMVAATLTFGRDAATTEPVAKLDLASLLRTVLDDAADGDPDHAEALTYAGPAH
                     MPVLGRPLALKRAFANLIGNALKYGEAAGVTLQAPLRGMARIDIEDKGPGIPADEMER
                     VFEPFRRLETSRNRETGGSGLGLSIARNIVRAHGGDISLANRADGGLRVTVTLPV"
     gene            complement(2004..2720)
                     /locus_tag="VEQ16_04675"
     CDS             complement(2004..2720)
                     /locus_tag="VEQ16_04675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010515719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYP63156.1"
                     /translation="METMPHILIVDDDREIRDLLAKFLERNRLRVTTARDAKEARRAF
                     ANGHYQLVVLDLMLPGEGGLEVARWFRAETNVPIIMLTAMAEETDRIVGLELGADDYV
                     TKPFNPRELLARIRAVLRRTGDTEERAPDHAKSYHFSGWVLETARRRLLDPSGVEVAI
                     TGGEYDLLMALLDRPNRVLTRDMLLDLLRGRQAGPFDRAIDVAVSRLRRKLEDDGRNA
                     QLIKTVRGGGYVLSTPVERH"
BASE COUNT          552 a          992 c          935 g          486 t
ORIGIN      
        1 atgacgggcc gctcggtggt gaggtgccgc agcttggtgg agacggcgag cgtctcccaa
       61 tcgaacggcg cgtaggtgca ttcgcccttc tcggcgagct gggtcaccgc cgtcaaaaat
      121 tcatcatagc gcagataggg gaagggaaag cccggtttgc ggctcggcca gtccgcctcg
      181 gggcgcagga actcatccac atgcagaatc tcgaacccgt aaagcgcacg cagaccgtag
      241 gcgagcgtgg tcttgcccgc gcatggcaac ccatcaatgg caatcagctt gcgggtcagc
      301 atacccgtca gcgcaggcat aaccccgtct gacatcgcgg atcgcgcgtc caacatcgtc
      361 agctcccata cgcgacttgc cttgccttct aaagcaatgc ggagtcgcgt tgaaccgcca
      421 tgttgggaac gcacgaaaaa ttgatatttt tcagccgcta aaccggcagc gtcaccgtta
      481 cgcgcaagcc gccatcggca cggttcgcca ggctgatatc cccgccatgc gctcgcacga
      541 tattgcgggc gatggacaga cccagcccgg agccgcccgt ctcgcggttg cggctggtct
      601 ccagccggcg gaagggctcg aacacgcgct ccatctcatc ggcgggaata ccgggcccct
      661 tatcctcgat atcgatgcgc gccatgccgc gcagcggcgc ctgcagggtg acaccagccg
      721 cttcaccata tttcagagca ttaccgatga gattggcaaa agcccgcttc aacgccagcg
      781 gccgtcccag caccggcata tgggcgggcc ctgcataggt cagcgcctcg gcatggtccg
      841 ggtcgccatc ggcggcatcg tccagcacag tgcgcagcag gctggcgaga tccagcttgg
      901 ccaccggctc ggtggtggcg gcgtcgcgcc cgaaggtcag ggtggcggcc accatcgcct
      961 ccatctcatc gaggtcagcc agcattttgg cgcgctgctc ctcatcctcc atatattccg
     1021 cgcgcaattt cagccgcgtg atcggcgtgc gcaaatcatg acctatggcg gtgagcagga
     1081 aggtgcggtc ctcgacgaag cgcctgacgc gcgccgccat ggtgttgaag gcctgcgccg
     1141 cggtcacgat ttcggacggc ccggtttccg gcagaggcgg cgcattggcc acgtcccgcc
     1201 ccagcgcctc ggccgccgcg gccagggtct tcacgggcgt caggagctga cgcaccgccc
     1261 aggtgatcat caccgcgccc agcaacgtca tcacgatgaa agccgaggca aagccaggcg
     1321 agcgccaagg cgccacaggc ggcaaagtgg agctgatggt cagccaatag accggtggca
     1381 gcagcgcatc cggcggcggc agcatgccgg ccagcagctg gccgggcgtg atgccaggcc
     1441 catccccccc atatggcggc ggcccgccgg ggccacccgg cccgaacggc cctccaccat
     1501 cgggcgggcc gccagggagg ggcggcagat cgccggggaa aaacagatcc tcgggcagac
     1561 cgaagctgat gatatagcgc ggcggatcgc ccgccacgcg cagcatcatg ccatgcggat
     1621 ggatattggg cggtatgcca taggcgaaca tgccggcgcg gatggcctcg cgcgcgggga
     1681 gcggcatcgg gtaggtattg ctcaccggcg gcgccagcga gagcaccgcc gtatcgccct
     1741 tcggcagcgg ctccctggcc agcaatgcgg cccggtcctc tggcgcggcc aaggcgatat
     1801 ggcggtagat gatgaccgcc cgcacagcga attcctgctc ctcttccagc cgccccagct
     1861 tcatctggtt gaaggtatgg atgagcagac caagcagctg gatcagcgca aagccaacca
     1921 gcaggatcag gatgatccgt tgcgccagac tctttggcag aaacaaggac ttcatctatg
     1981 gagcgcgcat cgtccgcgca tggtcagtgg cgctctaccg gcgtagacag cacatagccg
     2041 ccgccgcgca cggtcttgat gagttgggca ttgcgcccgt catcctccag cttgcggcgc
     2101 aggcgcgaca cggccacatc gatggcgcgg tcgaacggcc cggcctggcg gccgcgtagc
     2161 aaatcaagca gcatgtcgcg cgtcagcacg cggttgggcc ggtccagcag cgccatcagc
     2221 aaatcatact cgccgccggt gatggccacc tccacgcccg aagggtcgag caggcggcgg
     2281 cgcgccgttt ccagcaccca gccggaaaaa tgatagctct tggcatggtc gggcgcgcgc
     2341 tcctccgtgt ccccggtgcg gcgtagcacg gcgcggatgc gcgccagcag ctcgcgcggg
     2401 ttgaagggct tggtcacata atcatccgcc cccagttcca gtccgacgat gcggtccgtc
     2461 tcctccgcca tggcggtgag catgatgatg ggcacattcg tctccgcgcg gaaccagcgc
     2521 gccacctcca gcccgccctc gccaggcagc atgaggtcaa gcaccacaag ctggtaatgg
     2581 ccattggcga aggcccgccg cgcctccttg gcatcgcgcg ccgtggtcac gcgcagccgg
     2641 ttgcgctcaa ggaatttggc cagcaaatcg cggatttccc tgtcgtcatc gacgatcagt
     2701 atgtgcggca tagtttccat ggtttgttac aatagccccc tcacggaggc ttgtgcaggt
     2761 caagttgcat ttcgagacaa tttcgaaagg tctgagacat ttttgtccgc caccttgcga
     2821 taccacccca taaaaagctt gcgccccagt aactttggcc ctatgggggc gcccacgcag
     2881 caacgtacgt gcctctgccg gtctccggtt acgcaacggc gtcaagcgtt ctggcagcac
     2941 agccggacac catcaggcgg gcccc
//
LOCUS       DASQCV010000313         2645 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1727724, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000313 DASQCV010000000
VERSION     DASQCV010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1727724"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..129)
                     /locus_tag="VEQ16_04680"
     CDS             complement(<1..129)
                     /locus_tag="VEQ16_04680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015073990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1013 domain-containing protein"
                     /protein_id="HYP63157.1"
                     /translation="MSLPLMPKATAVWLIDKTGLTFEQIADFCGMHPLEVQAIADGE"
     gene            277..480
                     /locus_tag="VEQ16_04685"
     CDS             277..480
                     /locus_tag="VEQ16_04685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1192 domain-containing protein"
                     /protein_id="HYP63158.1"
                     /translation="MIFSEDEPPPRPKKLLVPPSLDLLGVEELAAYIAELQAEIARVE
                     QSIATKRAHKDAASAFFKTPSKE"
     gene            559..1365
                     /locus_tag="VEQ16_04690"
     CDS             559..1365
                     /locus_tag="VEQ16_04690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014188550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HYP63159.1"
                     /translation="MKIAVGYEFIYQFPQPTPMTLTLNVHASRAGDLLVADMMTTTPH
                     VPISFHRDSFGNQCARLVAPAGRFRLASAGTVIAADTPDPVVATARQHAVEDLPVATL
                     PYLLGSRYCETDVLTPIAWRLFGDTPPGWARVQAVCDFVHKRIKFDYLQARSTRTALQ
                     AYQEQVGVCRDYAHLGVALCRALNIPARYCTGYLSDIGEPLPHPPGDFAGWFEAYLGG
                     AWRTFDPRNNKPRLGRILMAYGRDATDVALCNIFGPSLLEGFTVWTHEAI"
     gene            1380..1895
                     /locus_tag="VEQ16_04695"
     CDS             1380..1895
                     /locus_tag="VEQ16_04695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HYP63160.1"
                     /translation="MARRRGLSEDDLKLWAAYGRTLSRLLPGRVVLPLAPDPPQPDPP
                     APVAPPVAVKPSLARPPAELGINTAPAGLDKSSWKHFHTGKIRVEARLDLHGHTAVRA
                     HHKVQSFLEQAHGTGMRCVEIITGKGEILARELPHWLNAPALRPYILALAHPHAANTG
                     SVRILLRRRRA"
     gene            1918..2352
                     /locus_tag="VEQ16_04700"
     CDS             1918..2352
                     /locus_tag="VEQ16_04700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009539401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYP63161.1"
                     /translation="MTPFGEKLRQLRQARGILQRDMAAALEISAPYLSALEHGRRGTP
                     SAGLIHQICQYFGLIWDEADELKVLAKSSRPRLRLNAAGLTPAQTALANRLARELRHL
                     DAQTVAAMQELLDAARSAQPASAPLSRKKPSRGNKGRPRTVK"
     gene            complement(2277..>2645)
                     /locus_tag="VEQ16_04705"
     CDS             complement(2277..>2645)
                     /locus_tag="VEQ16_04705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HYP63162.1"
                     /translation="LLVCDAKIFDKPVDLSEAAAHLRLLSGQVHELVTAVCVMRGEAA
                     LWRHVETVRLTMRPLSEAFISRYLKAEGSRILGCVGGYRLEGWGAQLFERVEGDYFTV
                     LGLPLLPLLGFLRESGALAG"
BASE COUNT          497 a          939 c          759 g          450 t
ORIGIN      
        1 ttcaccatcg gcgatcgcct gcacctcgag cgggtgcatg ccgcaaaaat cggcaatctg
       61 ctcgaaggtc agcccggtct tgtcaatcaa ccagactgcg gtagctttgg gcataagggg
      121 caaagacatg gacaacatac cttacaaagg cgctagaggc gcgattcctc tcgcgggcct
      181 tgcggcccga tgcggagata atcattcgcc tgcgggagac aagttaaact tgcgcgcggt
      241 atggaacccc caccacctcc aggtcaagat cgttccatga tattttccga ggatgaaccg
      301 ccgccgcggc cgaaaaaact tctggtcccg ccgtctttgg atcttctggg ggtggaagag
      361 ctggcagcct acatcgccga gctgcaggcc gaaatcgcgc gcgtggagca aagcatcgct
      421 accaaacgcg cccataaaga cgccgccagc gcctttttca agaccccctc caaggaataa
      481 tggcgcccgg ctctcctctt ctgtaagcag gttctgtaag caggcggcgc ggccaggacg
      541 gccggaagga ccagaaattt gaagatcgcg gtcggctacg aattcatcta ccagttcccg
      601 caacccaccc ccatgacgct gacgctgaat gtccatgcca gccgggcggg cgatctgctc
      661 gtggcggata tgatgaccac caccccgcat gtgccgatca gcttccaccg ggactccttc
      721 ggcaaccagt gcgcccgtct ggtcgccccg gccgggcgtt tccgcctggc cagcgccggc
      781 acggtcatcg ccgccgatac gccggacccc gtggttgcca ccgccaggca gcatgcggtc
      841 gaggatctgc cggtcgctac cctgccctat ctgctgggca gccgctattg cgagaccgac
      901 gtgcttaccc ccattgcctg gcgcctgttc ggcgacacgc cgccgggctg ggcgcgggtg
      961 caggcggtgt gcgacttcgt ccataaacgc ataaaattcg actacctgca ggcgcgctcc
     1021 acccgcacag cactgcaggc ctatcaggaa caagtcggcg tctgccgcga ttacgcgcat
     1081 ctcggcgtgg ccctctgccg tgccctcaac atccccgctc gctactgcac cggctatctc
     1141 agcgacattg gcgagccctt gccccacccg ccgggcgatt tcgcgggttg gttcgaggcc
     1201 tatctcggcg gcgcctggcg cacattcgac ccgcgcaaca acaagccgcg tctcggccgc
     1261 attctcatgg cctatggccg cgacgctacc gacgtggctt tgtgcaacat tttcggcccc
     1321 agcctgctgg aaggctttac cgtctggacc catgaagcga tctgaccaat gattgcgcca
     1381 tggcgcggcg cagggggctc tccgaggacg atttaaagct ctgggcggcc tatggccgga
     1441 cgctttcgcg cctgctgccc ggccgggtgg tgctgccgct cgcccccgac ccgccgcaac
     1501 ccgacccgcc tgccccggtt gcaccgcccg tggccgtaaa accaagcctg gcccgccccc
     1561 cggccgaact gggcatcaac accgccccgg ccgggctcga caaatccagc tggaagcatt
     1621 ttcacaccgg caaaatccgc gtcgaggccc ggctcgattt gcacggccat acggcggtca
     1681 gggcgcatca caaagtgcag tccttcctcg aacaggcgca tggcaccggc atgcgctgcg
     1741 tggagatcat caccggcaag ggcgaaatcc tggcacgcga gctgccgcat tggctcaacg
     1801 ccccggcttt gcgcccttat atattggcgc tggcgcatcc ccatgccgcc aataccggct
     1861 cggtgcgcat tctgctccgc aggcggcgcg cgtgacgatg tttttcagga gcaaggcgtg
     1921 acgcctttcg gcgaaaaact ccgccagttg cgccaagcgc gcggcatatt gcagcgggac
     1981 atggctgccg ccctggaaat ttccgcgccc tatctttcag ccctggagca tgggcggcgc
     2041 ggcacgccgt cggcggggct catccatcaa atctgccaat atttcggcct catctgggac
     2101 gaggcggatg aactcaaggt acttgccaaa tcctcccgcc cgcgcctgcg gctcaacgcc
     2161 gccggcctca ccccggcgca gacggcgctt gccaaccgcc tagcgcgcga actgcggcat
     2221 cttgatgcgc agaccgtcgc cgccatgcag gagctgctcg atgcggcccg ctcagctcag
     2281 cccgccagcg ccccgctctc gcgcaaaaaa cccagcaggg gcaacaaagg caggccgaga
     2341 acggtaaaat aatccccctc cacgcgctcg aagagttgag cgccccagcc ttccagcctg
     2401 tagcccccca cgcagccaag aattctgctc ccctccgctt tcagataacg ggagatgaaa
     2461 gcctcgctca aaggccgcat ggtcagccgc accgtttcca catggcgcca cagcgccgcc
     2521 tcgccgcgca tcacgcagac cgcagtgacc agctcatgca cctgcccgga aagcaggcgc
     2581 aaatgcgccg ccgcctccga caaatcgacc ggcttgtcga aaatttttgc atcgcagacc
     2641 aggag
//
LOCUS       DASQCV010000314         8394 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3218919, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000314 DASQCV010000000
VERSION     DASQCV010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 8394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8394
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3218919"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..395)
                     /locus_tag="VEQ16_04710"
     CDS             complement(<1..395)
                     /locus_tag="VEQ16_04710"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493216.1"
                     /note="catalyzes the formation of
                     pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose
                     1-diphosphate from nictinate D-ribonucleotide; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide diphosphorylase
                     (carboxylating)"
                     /protein_id="HYP63163.1"
                     /translation="MILSPLPAIMIEQAVRAALLEDLGRAGDITSDAVIPAAARARVA
                     LLAREPGVVAGLDFCKFAFTLIDPEISFKPRVADGARVAPGDILADISGPARGILTAE
                     RVGLNFLGHLSGIASATRGIADSIAHTRV"
     gene            complement(395..1810)
                     /locus_tag="VEQ16_04715"
     CDS             complement(395..1810)
                     /locus_tag="VEQ16_04715"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008734 - L-aspartate oxidase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HYP63164.1"
                     /translation="MIIIGGGAAGLMAALAAAPRKVILLNPGPLGASAASAMSQGGLA
                     AAIGADDDVALHVADTLAAGAGLCDRAAVERIIGAGPALVEKLLRLGVRFDQNKNGGL
                     ALGLEAAHARPRILHANGDQTGAEIMRALIELVRQTPSVTILQGTACKILVDDAGVSG
                     VLAQCGEEIIALPADRVLLATGGIGGLFSHTTNPAGAIGQGLMLAQDAAAELKDLEFI
                     QFHPTALDVPGNSLPLISEAVRGEGARFIDETGAYFMQGADLAPRDVVARGVFAHLQA
                     GHRVFLDARPIGTRFAARFPAIAAICAQAGIDPAAQPIPVRPAAHYHMGGVAVDAAGR
                     TSIAGLYAAGEVARTGLHGANRLASNSLLEAAICGEAAGHAMAAQDARNVTAKNCALP
                     PAPDAAPVRPVMSKYLGVLRDGAGLTRALELFAHMANGNSAASLGLHIATAALARENA
                     VGAHARTDAKQGTTEQFFKAA"
     gene            complement(1807..2766)
                     /gene="nadA"
                     /locus_tag="VEQ16_04720"
     CDS             complement(1807..2766)
                     /gene="nadA"
                     /locus_tag="VEQ16_04720"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HYP63165.1"
                     /translation="MPLDLYTKVSRVIPPVEWATMAEDAEAILELKRQKRAVILAHNY
                     QTPEIFHGVADIVGDSLALAREAEKADADVILLAGVHFMAETAKLMNPEKIVLIPDAE
                     AGCSLAESITAEDVALMRAKYPGRPVVAYVNTSAEVKAASDICCTSGNAKKVVESLGV
                     PEVIMIPDEFLAQNVAKETGVKIIAWKGHCEVHERFTPDEILDLKARHPGVVVLAHPE
                     CPPEVVAVSDFSGSTAVMADYVRSKKPARVALITECSMSDNIAQGAPETEFIRPCNLC
                     PHMKRITLKNIRRALEEMQTEVTIPAALFAPARRSVERMLAVK"
     gene            complement(2851..3720)
                     /locus_tag="VEQ16_04725"
     CDS             complement(2851..3720)
                     /locus_tag="VEQ16_04725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010507441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63166.1"
                     /translation="MVETELIAVLVAVTDGDPRVLTIENGYALPSGPLEPGHRSLQAG
                     LRAWVERQTHHPITYVEQLYTFADQQRGGARGISISYLALSREAPVEFPGTSWRSWYH
                     YFPWEDRREDSALVASIIGRLTPWAAGDAQRLARIAGLFGTPEKPWNEELVLQRYELL
                     WEAGLVPEATRQALAAATPVAGKEMLHDHRRILATAIARLRAKIKYRPVVFELLPHEF
                     TLLELQQTMESLAGQSLHKPNFRRFIEAQELLEETGRSTSGLAGRPAKLFRFRPAVLE
                     ERSFAGTKLPIVK"
     gene            complement(3902..5380)
                     /gene="gabD"
                     /locus_tag="VEQ16_04730"
     CDS             complement(3902..5380)
                     /gene="gabD"
                     /locus_tag="VEQ16_04730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009013 - succinate-semialdehyde
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_process: GO:0009450 - gamma-aminobutyric acid catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HYP63167.1"
                     /translation="MLNTAATLPLKDPTLLREANYVDGKWIEADSGKWIEVKNPATGE
                     LVGRVPSLGAAETKRAIEAAYKAQGPWRKLLAKERAAILRKLFNLMLENADDLAIIMT
                     AEQGKPLAEAKGEIAYAASFIEWFAEEGKRVYGDMIPQNAQGRRILVQKEPIGVFAAI
                     TPWNFPAAMITRKAGPGWAAGCTGVIRPASQTPFSALALAALAERAGMPAGVCNVITG
                     PSSATGAELTANPMVRKLTFTGSTEVGAKLIAQSAPTIKKLSMELGGNAPFIVFDDAD
                     LDEAVKGAIASKFRNAGQTCVCANRLLVQDGVYEAFTQKLKVAVEALKVGNGMDEGVT
                     QGPLINAEAVAKVEEHIEDAVKGGARVVTGGKPHKLGGNFFEPTILVDVPKNAKVSHE
                     ETFGPLAPIFRFKTEEEAVQMANDTEFGLASYFYARDVGRIFRVAEALEYGIVGINEG
                     IISTEVAPFGGVKSSGLGREGSKYGIEDYLEIKYLALGGIGG"
     gene            5699..6610
                     /locus_tag="VEQ16_04735"
     CDS             5699..6610
                     /locus_tag="VEQ16_04735"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYP63168.1"
                     /translation="MTDVTAEQQPFSIQRWKVGDITITKIVESQQLFDIPAAFPEASV
                     EDLLALPWLQPHFVTPEGRGILSIHALVVDTPAKRIIVDTCVGNGKDRAGWAHYANRQ
                     TSFLRDLEAAGFAPESFDVVLCTHLHVDHVGWNTVLEDGQWRPTFPNARYLLNRSEYE
                     YWAAPLEQMPGGFDIVQRLTFSDSVQPIFEAGLVDLVEGAYSVCEEVSLVPTPGHSPG
                     HVSVRISSCGEEALITGDIAHHPCQLAHVHWGIPHIDFNFEQAIETRRCVFAEVADRP
                     VLVIGTHWAGATAGQVKRCGEAFKLEC"
     gene            complement(6672..7517)
                     /locus_tag="VEQ16_04740"
     CDS             complement(6672..7517)
                     /locus_tag="VEQ16_04740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008944615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HYP63169.1"
                     /translation="MRLRSLLFVPGDRPERFDKAAASGADALILDLEDSVSAANKGKA
                     REAIAAYLDRPERPVPLFVRINPLDSAFTGEDLCAVADHRPDGIMLPKAEGGQSVVKL
                     DKRLTALGNRNALIFPLATETAAAIFAIGTFGGTPRLCAMSWGAEDLPAAIGAATARE
                     ADGSFTPPYELARSLTLFGAHAASVSAIETVFPDIKNIEGLAAYAARGRRDGFTGMMA
                     IHPAQIPVINEAFTPTAEELAHAQKIVDAFATAPEAGVLQIDGKMVDAPHLKQARRIL
                     ALAGA"
     gene            complement(7514..7966)
                     /locus_tag="VEQ16_04745"
     CDS             complement(7514..7966)
                     /locus_tag="VEQ16_04745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019016162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase"
                     /protein_id="HYP63170.1"
                     /translation="MAGRHFDEWTIGEKIEHEIRRTVTETDNLLFSAMTYNPQPLHID
                     AEFAKQSEFGQILVNGTFTFSLMAGLSVADTTLGTLVANLGYDRLVMPKPVFIGDTLR
                     ATTEIVELKESKSRPNAGIVTFKHEMLNQRNEIVCQCLRMALVKRKAA"
     gene            complement(7966..>8394)
                     /locus_tag="VEQ16_04750"
     CDS             complement(7966..>8394)
                     /locus_tag="VEQ16_04750"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HYP63171.1"
                     /translation="TGLRVAAAPDTRIAVDIAGFTHVVTLQEPAPSFTTASVAGEEVL
                     FTAGEAWSFGLARADHAAGGAAASDGAILSPMPGRIIAVHAAQGERVAKGQKLLVLEA
                     MKMEQQLLAPFDGVVKTFNAALDAQIAEGVLLALIEKGAE"
BASE COUNT         1509 a         2696 c         2609 g         1580 t
ORIGIN      
        1 tttacccgcg tatgcgcgat ggaatcggca atcccgcgcg tggcggaagc gatgccggag
       61 agatgcccga ggaaattcag ccccacccgc tccgccgtga gaatgccgcg cgccgggccg
      121 gaaatatccg ccaatatatc gcccggcgcc accctggcgc catcggcgac acgcggcttg
      181 aaactgattt cgggatcgat gagcgtgaaa gcgaatttgc agaaatccag ccccgcaacc
      241 acgccgggct cgcgcgccag cagcgccacc cgcgcgcgcg ccgccgccgg aatcacggcg
      301 tccgacgtaa tatccccggc gcggcccaaa tcctccagca gcgcggcgcg caccgcctgc
      361 tcgatcatga tagcgggaag aggagacaga atcattatgc ggccttgaaa aactgctctg
      421 tggtgccctg ttttgcgtcg gtacgcgcat gcgcgcccac cgcgttctcg cgcgccagcg
      481 cggccgtggc aatatgcagc cccagtgaag ctgcggaatt tccattagcc atatgtgcga
      541 ataattccaa tgcgcgggtc aaacctgctc catcccgcaa cacaccgaga tatttggaca
      601 tgaccggccg tacaggcgcc gcatccggcg cgggcggcag ggcgcaattc ttcgccgtca
      661 cattgcgcgc gtcctgcgcc gccatggcgt gtcccgccgc ctcgccacag atcgccgctt
      721 ccagaagaga attgctggcc agccggttgg cgccatggag cccggtgcgc gccacctcgc
      781 cagccgcgta cagcccggca atgctggtgc ggcccgccgc atccaccgcc acgccgccca
      841 tatggtaatg cgccgccggg cgcaccggaa tcggctgcgc cgccgggtcg atgccagcct
      901 gcgcgcaaat ggcggcgatg gcgggaaagc gcgcggcgaa acgtgtgccg atgggccgcg
      961 catcgagaaa aaccctatgc ccggcctgca aatgcgcgaa cacgccgcgc gccaccacat
     1021 cgcgcggcgc gaggtccgcg ccttgcatga aataggcgcc cgtttcgtcg atgaagcgcg
     1081 ccccctcgcc gcgcaccgcc tcggaaatca acggcaggga gttgcccggc acgtccaaag
     1141 ccgtcgggtg gaactggatg aattccagat ccttgagttc cgccgccgca tcctgcgcca
     1201 gcatcaaccc ctggccgatg gcgcccgccg gattggtggt gtgcgaaaac agcccgccaa
     1261 tgccgcccgt ggcgagcagc acgcggtccg caggcaaggc gataatctcc tcgccgcact
     1321 gcgccagcac accgctcacg cccgcatcat ccaccagaat cttgcacgcc gtgccttgca
     1381 aaatcgtgac actcggcgtc tggcggacaa gctcgatcag cgcacgcatg atctcggcac
     1441 ccgtctggtc gccattcgca tgcaggatgc gcggccttgc atgcgccgcc tccagcccca
     1501 gcgccagtcc gccatttttg ttctggtcga accgcacgcc aagccgcagc aatttctcca
     1561 ccagcgccgg cccggcacca atgatgcgct ccaccgcggc gcggtcgcac aatcccgccc
     1621 ccgccgccag cgtatccgcc acatgcagag ccacatcgtc gtcagcgcca atcgccgccg
     1681 ccaacccgcc ctggctcatc gcgctcgccg cgctagcgcc gagcggcccg ggattgagca
     1741 aaatcacctt ccggggggct gcggcaagtg ctgccatcag ccccgcggcg ccaccgccga
     1801 tgatgatcat ttgacagcga gcatcctctc gacggagcgc cgcgccggcg cgaacaatgc
     1861 cgccggaatc gtcacttcag tttgcatctc ttccagcgca cgcctgatat ttttcagtgt
     1921 gatgcgcttc atgtgcgggc ataggttgca ggggcggatg aattccgtct ccggcgcgcc
     1981 ctgcgcgata ttatcgctca tcgagcattc cgtgatcagc gccacacgcg ccggtttttt
     2041 gctccgcaca taatccgcca tcaccgccgt ggagcccgag aaatcggaca cagcaacaac
     2101 ctccggcggg cactcaggat gcgccagcac caccacacct ggatggcgcg ccttcaaatc
     2161 cagaatttca tccggcgtga aacgctcatg cacctcgcaa tggcccttcc aggcgatgat
     2221 tttcacgccc gtctccttgg ccacattctg cgcgagaaac tcatcgggga tcatgatcac
     2281 ttccggcacg ccgagcgatt ccaccacctt cttcgcattg cccgaggtgc agcaaatatc
     2341 gctcgccgcc ttcacctcgg cggaggtgtt tacgtaagcc accactggcc gccccggata
     2401 tttggcccgc atcagcgcca catcctcggc cgtgatgctc tccgccagcg agcagcccgc
     2461 ttccgcatcc gggatgagca caattttctc gggattcatc agcttcgccg tctcggccat
     2521 gaaatgcacg ccggcgagca ggatcacatc cgcatccgct ttttccgcct cgcgcgccag
     2581 cgccaggctg tcgccgacaa tgtccgccac gccgtggaaa atttccggcg tctggtaatt
     2641 atgcgccagg atcaccgccc gcttctgccg cttcagctcc aaaatcgctt cggcatcctc
     2701 cgccatggtg gcccattcaa cgggcgggat cacgcgggac actttggtgt agaggtcaag
     2761 cggcattgtc atcgttcctt attatactca atctgagtat aatttccttc cgcgcgttat
     2821 actcacattg agtataacag cgcaaggggc ttatttgacg atgggcagct tggtcccggc
     2881 gaaactccgc tcctccagca cggcggggcg gaagcggaaa agcttcgccg gccgcccggc
     2941 gaggccggag gtggagcggc cggtctcctc cagcagctcc tgggcctcga tgaagcggcg
     3001 gaaattcggt ttgtgcaggc tctgcccggc gagggattcc atagtctgct gcaattccag
     3061 cagcgtgaat tcatgcggca gaagctcgaa caccaccggg cggtatttaa ttttcgcccg
     3121 caaccgggca atggcggtgg cgagaatgcg gcgatggtcg tgcagcatct ccttgccggc
     3181 caccggcgtg gcggccgcca gcgcctggcg cgtggcttcg ggcaccagcc cggcttccca
     3241 cagcagctca tagcgctgca gcaccagctc ctcgttccag ggcttttccg gcgtgccgaa
     3301 cagcccggca atgcgcgcca ggcgctgcgc atccccggct gcccagggcg tgaggcggcc
     3361 gatgatgctt gccactagag cgctgtcctc gcgccggtcc tcccagggga aataatggta
     3421 ccagctgcgc caggacgtgc ctggaaattc caccggcgcc tcgcggctca gggcgagata
     3481 ggagatggaa atgccccgcg ccccgccgcg ttgctggtcg gcgaaggtgt aaagctgctc
     3541 gacataggtg atgggatggt gcgtctgccg ctccacccag gcgcgcaggc ccgcctgtag
     3601 cgagcggtgg cccggctcca gcgggccgga gggcagggcg tagccattct cgatggtgag
     3661 cacgcgcgga tcgccgtctg ttacagcaac gaggacggcg atcagctcgg tttcgaccat
     3721 acgacggttt tgcttgattc tggggcgaaa agaaaggcca gggctctgcc ctggaccccc
     3781 attacttggg ccagaggtgg tgcctccatg gagaggcttc ccatggagtc aaatcccgtg
     3841 gcccaagtcg caaaagtttt tggtgcgcct tttttcaaaa ggcgcaaaaa acctcggagt
     3901 cttacccccc aatcccacca agcgcgagat acttgatctc cagataatcc tcgatcccgt
     3961 atttcgaacc ctcgcgcccc agcccggacg atttcacgcc gccgaacggc gccacttcgg
     4021 tggagataat cccctcattg atgccgacga tgccatattc cagcgcctcg gcgacgcgga
     4081 agatgcggcc cacgtcgcgg gcgtagaaat aggaggctag gccgaattcg gtgtcattgg
     4141 ccatctgcac ggcttcctct tccgtcttga agcggaagat gggggccagc gggccgaagg
     4201 tttcttcatg cgagaccttg gcgttcttgg gcacgtccac gaggatggtc ggctcgaaga
     4261 aattgccgcc cagcttgtgg ggcttgccgc cggtgacgac acgggcgccg cccttcacgg
     4321 cgtcctcgat atgctcttcc accttggcca cggcctcggc gttgatgagc gggccctggg
     4381 tcacgccctc atccatgccg ttgccgacct tcagcgcttc cacggcgacc ttcagcttct
     4441 gcgtgaaagc ctcgtacacg ccgtcctgca ccagcaggcg gttggcgcat acgcaggtct
     4501 ggccggcatt gcggaactta ctggcgatgg cgcccttcac ggcttcgtcc aaatcggcat
     4561 cgtcgaacac gatgaagggc gcgttgccgc ccagctccat ggagagtttc ttgatggtgg
     4621 gggcgctctg cgcgatgagc ttcgcgccca cttccgtgga gccggtgaag gtgagcttgc
     4681 gcaccatcgg gttggcggtg agttccgcgc cggtggcgct ggaggggccg gtgatgacgt
     4741 tgcacacgcc ggccggcatg ccggcgcgct cggccaacgc ggccagggcc agggcggaga
     4801 agggcgtctg gctcgccggg cggatgacgc cggtgcagcc cgcggcccag ccggggccgg
     4861 ccttgcgggt gatcatggcg gcggggaagt tccagggcgt gatggcggcg aacacgccga
     4921 tgggctcttt ctgcacgagg atgcggcggc cctgcgcgtt ctgcgggatc atgtcgccat
     4981 agacgcgctt gccctcttcg gcgaaccatt cgatgaagct ggcggcatag gcgatttcgc
     5041 ccttggcctc ggccagcggc ttgccctgct cggcggtcat gatgatggcg aggtcatcgg
     5101 cattttcgag catcaggttg aacagcttgc gcaggatggc ggcgcgctcc ttggcgagca
     5161 gcttgcgcca ggggccttgc gccttgtagg cggcctcgat ggcgcgcttg gtttcagcgg
     5221 cgccgagcga gggcacgcgg ccgaccagct cgccggtggc ggggtttttc acctcgatcc
     5281 atttaccgct atcggcctca atccatttgc catccacgta attggcttcg cggagcaggg
     5341 tggggtcttt caggggcagg gttgcggctg tgttgagcat gatgaggtcc tcgctgatat
     5401 tttgcggcat cgctggaggc ggtgcgcggt ggcgaagctt ttatcatggg gccgccgggc
     5461 ttggtagctg ctgcaaaaat gcacgggtgg acgagaatta accggaggcc agggggcgtt
     5521 ctcgcctggt ccgccggagg ggcgctttct gggagggggt gtcaaggatg acctgccggg
     5581 tcgtgtccca gtctgaaagt cccaaaatta tatcttttaa ttatagattt ccggttgcat
     5641 gccatatgtt caggagaggc aaggaaaaaa taggcgttca gtcgaagagg aagcgagaat
     5701 gactgatgtg acggcagaac agcagccctt ctcaatccag agatggaaag tcggcgatat
     5761 cacgatcacc aagatcgttg agagccagca gctgtttgac ataccggcag cgtttcccga
     5821 ggccagcgtc gaagatcttc tcgcgctgcc atggcttcaa ccgcattttg taacgcccga
     5881 gggccgcggc atactcagca tccatgctct tgtggtggat acgccggcca aaaggattat
     5941 cgtcgacaca tgtgtcggta acggaaagga ccgggcgggc tgggcgcatt atgccaatcg
     6001 gcaaacatcc ttcctgcgcg atcttgaagc tgcgggcttt gctcccgaga gttttgatgt
     6061 tgtgctttgc acgcatctcc acgtcgatca tgtcggctgg aatactgtgc tggaggacgg
     6121 ccaatggcgg ccgacctttc ccaatgcgcg ctacctgctg aacagatcgg aatacgagta
     6181 ttgggccgcg ccgttggagc agatgcccgg tggcttcgac atcgtccagc ggctgacgtt
     6241 ttccgattcg gtgcagccca tattcgaagc cggcctggtc gatcttgttg aaggagcgta
     6301 ttcggtctgc gaagaggtct ctctggttcc cacgcccggc cattcccccg gccacgttag
     6361 cgttcgtatc tcatcatgtg gtgaggaagc gttaatcaca ggtgatatcg cgcaccatcc
     6421 gtgccagctc gcgcatgttc attggggcat cccacacatt gatttcaatt tcgaacaggc
     6481 catcgagaca cgccgttgtg tcttcgccga agtggctgac agaccggtgc tcgtaattgg
     6541 aacgcactgg gcgggtgcga ccgcagggca ggtgaagcgt tgcggtgaag cattcaagct
     6601 cgaatgttag acagagtcct gcttctcagc gagactctgt ctaacgggac acgacccgag
     6661 ccgtttttgt gttaagcccc agccagcgcc agaatccgcc gcgcctgctt cagatgcggc
     6721 gcatcgacca tcttgccgtc aatctgcagc accccggcct ccggcgctgt ggcaaacgca
     6781 tccacaatct tctgcgcgtg cgccagctct tccgccgtgg gggtaaaagc ctcgttgatc
     6841 accgggattt gcgccggatg gatcgccatc atgccggtaa acccgtcgcg ccgcccgcgt
     6901 gcggcgtagg cggcaaggcc ctcgatattc ttgatgtccg gaaacaccgt ctcgatggcc
     6961 gatacgctcg ccgcatgggc gccgaacaag gtgagcgacc gcgccagctc gtaaggcggg
     7021 gtaaagctgc catccgcctc gcgggcggtg gcggcaccga tggcggcggg cagatcttcc
     7081 gcgccccagc tcatcgcgca taaacgcggc gtgccaccaa acgtgccgat ggcgaaaatc
     7141 gcggcggcgg tttccgtcgc cagcgggaag atgagcgcgt tgcggttgcc gagcgcggtg
     7201 aggcgcttat ccagcttcac cacggactgc ccgccttccg ccttcggcag catgatgcca
     7261 tccggtctat ggtccgccac ggcgcagaga tcttcgccgg tgaaagcgct gtccagcggg
     7321 ttgatgcgga cgaacaacgg tacggggcgc tcggggcggt ccagataggc cgcaatggct
     7381 tcgcgcgctt tgcctttgtt ggcggcggaa acggaatctt ccaggtccag gatcagcgcg
     7441 tccgcgccgg aagcagcggc cttgtcgaaa cgttccggac ggtcgccggg gacgaagaga
     7501 agcgagcgga gtctcatgcg gctttccttt tcaccagcgc catgcgcagg cactggcaga
     7561 cgatttcatt acgctggttc agcatctcat gcttgaaggt gacgatgccg gcattggggc
     7621 gggatttcga ttccttcaac tccacaatct ccgtggtggc gcgcagcgtg tcgccaatga
     7681 agacgggctt cggcatcacc agtctgtcat agcccagatt ggcgaccagc gtgccgagcg
     7741 tggtgtcggc gacggagagg ccagccatta aagaaaaggt aaaagtgccg ttgacgagaa
     7801 tctgcccgaa ctcgctctgc ttggcgaatt ccgcatcgat atgcagcggc tgcgggttgt
     7861 aggtcatggc cgagaagagg agattatccg tctccgtcac ggtgcggcgg atctcatgct
     7921 cgatcttctc gccaattgtc cactcatcaa aatgcctccc ggccattatt ctgctccctt
     7981 ttcgatgagg gcgagtagca cgccttcggc gatttgtgca tccagtgcgg cgttgaaagt
     8041 tttcaccacg ccgtcgaagg gggcgagaag ctgctgttcc atcttcatgg cttccaggac
     8101 caaaagcttc tggcccttgg ccacgcgctc gccctgcgcc gcatgcacgg cgatgatgcg
     8161 ccccggcatg ggggagagga tggcaccgtc ggacgcggca gcaccgccgg cggcatggtc
     8221 ggcacgggcc aggccaaagc tccaggcctc gccagcggtg aacagcacct cttcgcccgc
     8281 cacgctggcg gtggtgaaag atggcgcggg ttcctgcagc gtcaccacgt gggtgaaacc
     8341 ggcaatatcg acggcgatgc gcgtatccgg cgccgcggcg acgcgcaggc cggt
//
LOCUS       DASQCV010000315         1567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2058374, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000315 DASQCV010000000
VERSION     DASQCV010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2058374"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            338..1489
                     /locus_tag="VEQ16_04755"
     CDS             338..1489
                     /locus_tag="VEQ16_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase"
                     /protein_id="HYP63172.1"
                     /translation="MLLAQTGTTIFTIMSALAAQHGAINLGQGFPDTEGPADVVRAAA
                     DALLDHRNQYPPLTGLPELKTAVAAANRRFYGLEIDPVAGVCVTSGATEAITACLMAL
                     LNPGDEVVLIEPLYDTYLPVVQMLGATARLVRLEPPGWDLPRDELAAAFGPKTKLLLL
                     NSPMNPTGKVFTRDELDFIAGLLAQHDAYAVCDEVYEHLVFAGAEHIPLMTLPGMGER
                     SLRIGSAGKTFSLTGWKVGYVSGPVALMSLVAKAHQNLTFTTAPNLQRAVALGLVKPD
                     AYFAELAGELQARRDMLDEGLRRLGFATLPAQGSYFITADFSPLRFNGDDIAFARIIT
                     EQAKVAAIPVSAFYVDAPPRHYVRFAFCKQPAVLQEALHRLERWLAPAP"
BASE COUNT          247 a          476 c          520 g          324 t
ORIGIN      
        1 ttgaacggct tgatgatcgc ttcgatcttt ttcatctggt ccacgccagg ccttcggccc
       61 gcgtcctcct ctgtttcgtg cggacagcgc gtaagcgcgc cagccaacgg gctggcggga
      121 gcatcctagc atgagccgtg ccagcgctgg gaatgggcct gaatccgtgg gcgaggcaag
      181 gttatgacgg gccattttgt gactctgccc accacatggc ggtttttgct taaattttat
      241 gcaggcttgc tgcaccccat cggagcgggc tactcaaccc cggaccacgc cgtatgaggg
      301 tggccgtatg agggtgtaag acgtgaaaca ggccaatatg ctgcttgctc agacgggcac
      361 gacgattttt acgatcatgt cggcgctggc cgcgcagcac ggggccatca atctgggcca
      421 gggctttccg gatacggagg gcccggcgga tgtggtgcgt gccgcggcgg atgcgctgct
      481 cgaccatcgt aaccagtatc cgcctttgac cggcctgccg gaactgaaaa ccgcggtggc
      541 cgccgccaac cggcgtttct atggtctgga gatcgacccc gttgcggggg tgtgcgtgac
      601 ctccggcgcg acggaggcga ttaccgcctg tttgatggcg ctgctcaatc ccggcgacga
      661 ggtggttctc attgagccgc tctatgacac ttatctgccg gtggtgcaga tgctgggggc
      721 cacagcgcgg ctggtgcggc tggagccgcc cggctgggac ctgccgcgcg acgagcttgc
      781 cgccgccttc gggccgaaga ccaaactgtt gctgctcaat tcgccgatga accccaccgg
      841 caaagttttt acgcgggacg agctcgactt catcgccggg ttgttggcgc agcacgatgc
      901 ttatgctgtc tgcgacgagg tgtatgagca tctcgtcttc gccggagcag aacatattcc
      961 gctgatgacc ttgcccggca tgggcgagcg tagtttgcgc atcggcagcg cgggcaagac
     1021 gttttcgctc actggctgga aggtgggcta tgtgtccggg ccggtggcgt tgatgtcgct
     1081 ggtggccaag gcgcaccaga acctgacctt caccaccgcg cccaatctgc agcgcgccgt
     1141 ggcgctgggg ctggtgaagc cggatgccta tttcgcggag ctggcgggcg agctgcaggc
     1201 gcggcgcgac atgctggatg aggggttgcg ccgccttggc tttgccactc tgccggctca
     1261 gggcagctat ttcatcaccg ccgatttttc gccgttgcgc ttcaatggcg atgacatcgc
     1321 ctttgcgcgc attatcaccg agcaggccaa ggtggcggcc atccctgtct ccgccttcta
     1381 tgtggacgcg ccgccgcgcc attatgtgcg ctttgccttc tgcaagcagc ctgccgtgct
     1441 gcaggaggcg ctgcaccggc tggagcgctg gctggcgccg gcgccgtagg gcacagacgt
     1501 gcagttatag ccattgacgg ccaagccccg atagcgttac gaggccccac cctggatggc
     1561 ggacgta
//
LOCUS       DASQCV010000316         3734 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2390013, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000316 DASQCV010000000
VERSION     DASQCV010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2390013"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1694
                     /locus_tag="VEQ16_04760"
     CDS             <1..1694
                     /locus_tag="VEQ16_04760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FdhF/YdeP family oxidoreductase"
                     /protein_id="HYP63173.1"
                     /translation="PKSIGIGKGTVSLDDFDHCELIIAIGHNPGTNHPRMMGTLHEVS
                     RRGVPIIVLNPLRERALERFTDPQDPVEMASLGSTPIASSYYQVKVGGDAAALKGIMK
                     ALLALDETHGGALDHDFLGLHTNGFAQLAEDLRTTGWVEIEAASGLTRAALESVATAY
                     AKSKATIVTYGMGVTQHNKGTQTVQQIANLLLLRGNFGKPGAGICPLRGHSNVQGDRT
                     VGINERPGTALLDAIERVYGFAPPRTHGHDAVASMEAILAGDSKILIALGGNLAVAMP
                     DPEQCFAAMRKLDLAVHIATKLNRSHLLIGKDSILLPCLGRTELDVQETGPQSVTVED
                     SMSMVHASAGKLPPASEHLRSEPAIVAGMARATLPSSKVDWLGLVADYDRIRDNIEAV
                     IPGFTDYNARIRIPGGFRLPLPPTERVWSTASGKAEFLLLAGLEVDPAITEAAPLRLT
                     TIRSHDQYNTTIYGLNDRYRGVFGRRDVVFMNKDDLARLGIAHGDLIDIDTALPGDEQ
                     RQLRGFTAIEYDIAPGSVAAYYPEANGLVPLSYQDKQSGTPSYKSVPVNIAPARG"
     gene            1694..2182
                     /gene="mobB"
                     /locus_tag="VEQ16_04765"
     CDS             1694..2182
                     /gene="mobB"
                     /locus_tag="VEQ16_04765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011632784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HYP63174.1"
                     /translation="MRLIGFIGSSGSGKTTLIERLLPVLKQRGLRVSAIKHAHHGFDL
                     DKPGKDSFRYREAGAEEVMLVADGRWALLREEEATLPMLVARMAPVDLVLVEGFKLAE
                     IPKIEVFRPSLGKAPFYTAGPGVVAVASDEQVDTQGHTLLPLDAPEKIADFILAQMMA
                     AP"
     gene            2179..3597
                     /gene="mobA"
                     /locus_tag="VEQ16_04770"
     CDS             2179..3597
                     /gene="mobA"
                     /locus_tag="VEQ16_04770"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: protein motif:HMM:TIGR00129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HYP63175.1"
                     /translation="MIPGVILAGGRSSRMGGGDKGLLTLGGHSMLEHVVAALRPQTSV
                     LMLNSNSGPELFSALGLEVRADVLPGRLGPLAGIHTAMLWARAQGAETVLTVPGDCPF
                     LPTDLVQKLTAARCEDEAVIAASSGQTHPVVGLWPCALAEHLQVVLQGGMRRVRDFLA
                     EIPHVNVEFPASEPDPFWNVNTPEDLQRAQALLTRNPPPPIAQASALIWRNATQKPAT
                     RALPEEVAVAMSYDRESFAVMMASPTSLEDFCIGFSLSEGIIDKISDIVALDIITVEA
                     GIECRMSLAAPARERLQARKRRIAGPVGCGLCGLESLQEASKILPRVTAAQNFTAQHI
                     ADGFRRMTAAQALNQATHAVHAAAFLTPDQTLLVREDIGRHNALDKLIGAVARQGGTG
                     AKGAVLLTSRVSLDLIQKTASFGAGILAAISVPTARAVREAEAAGITLIAVARDDGFE
                     LFTHPERIFTPPTGCSVTAKPE"
     gene            complement(3537..>3734)
                     /locus_tag="VEQ16_04775"
     CDS             complement(3537..>3734)
                     /locus_tag="VEQ16_04775"
                     /inference="COORDINATES: protein motif:HMM:NF013717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HYP63176.1"
                     /translation="GEVTGMVKLDEGMRRGVVSFPHGHEGANVNRLTDAQAADRLTGM
                     ARYSGFAVTLHPVGGVKIRSG"
BASE COUNT          730 a         1226 c         1141 g          637 t
ORIGIN      
        1 tgccgaaatc catcggcatc ggcaaaggca cggtctcgct cgatgatttc gaccattgcg
       61 agctgatcat cgccatcggc cataatcccg gcacgaatca tccgcgcatg atgggcactt
      121 tgcacgaagt gtcgcggcgt ggcgtgccca tcatcgtgct caaccctctg cgcgagcgtg
      181 cgctggaacg tttcaccgat ccgcaggacc cggtggagat ggcaagcctg ggctcgacgc
      241 cgattgcctc ctcctattac caggtgaaag tcggcggcga cgcggcggcg ctgaagggca
      301 tcatgaaggc actgctcgct ttagatgaga cccatggcgg cgcgctcgac catgattttc
      361 ttggcctcca caccaatggt tttgcacagc tggccgagga tctgcgcacc acaggctggg
      421 tggaaatcga agcggccagc ggactgaccc gcgccgcttt ggaaagcgtg gccactgcct
      481 atgcgaaatc gaaagccacc atcgtcacct acggcatggg cgtgacacag cacaacaagg
      541 gcacgcagac cgtccagcag attgcaaacc tcctgctcct acgcggcaat ttcggcaagc
      601 cgggggccgg catctgcccg ctgcgcggtc attccaacgt gcagggcgac cgcacggtgg
      661 gcatcaatga acgcccgggc acggcgctgc tggacgccat cgagcgcgtc tatggttttg
      721 caccgccgcg cacgcatggg catgatgctg tcgcctcgat ggaggcgatc ctggcggggg
      781 attcaaaaat cctcatcgcc cttggcggca atctcgccgt ggccatgcca gacccagaac
      841 aatgtttcgc cgccatgcgc aagctcgatc tcgccgtgca tatcgccacg aaactcaacc
      901 gctcgcatct gctcatcggt aaggactcca tcctgctccc ctgcctcggg cgcacggagc
      961 tggatgtgca ggaaaccggc ccgcaatcgg tgacggtgga ggattccatg tctatggtgc
     1021 acgcctcggc cggaaaatta ccgccagcat ctgagcattt gcgctccgag cccgccatcg
     1081 tcgccggcat ggcgcgcgcc acgctaccaa gcagcaaggt ggattggctg gggctggtgg
     1141 cagattacga ccgcatccgc gacaacatcg aagcggtgat ccccggcttc accgattata
     1201 atgcccgcat ccgcatcccc ggcggcttcc gcctgccctt gccacccacc gaacgcgtct
     1261 ggagcaccgc ctccggcaag gcagaatttt tgctcctcgc cgggctggaa gtggacccgg
     1321 ccatcacgga agcagccccc ttgcgcctca ccaccatccg cagccacgac cagtacaaca
     1381 ccaccatcta cgggctgaat gaccgctatc gcggcgtgtt cggccggcgc gacgtggtgt
     1441 tcatgaacaa ggacgatctc gcccggctgg gcatcgcgca tggcgatcta atcgatatcg
     1501 atacggctct gccaggcgac gagcagcggc aattgcgcgg cttcacggct atcgagtacg
     1561 acatcgcgcc gggctcagtg gcggcctatt atcccgaggc gaacgggctg gtgccgctct
     1621 cctaccagga caagcaaagc ggcacgccct cctataaatc ggtgccggtg aatatcgcgc
     1681 cggcgcgtgg ctgatgcgac ttatcgggtt catcggcagc agcggcagcg gcaagacgac
     1741 gcttattgag cgtctgctgc cggtactgaa acagcgcgga ttgcgtgtgt cggccatcaa
     1801 gcacgcgcat catggtttcg atctcgataa gccaggcaaa gatagtttcc gctaccgcga
     1861 ggccggtgcg gaagaggtga tgctggtagc ggacgggcgc tgggcattgc tgcgcgagga
     1921 ggaggccacg ctgccgatgt tggtggcaag aatggcgcca gtggacctcg tcctggtgga
     1981 aggtttcaag ctggcggaga ttccaaaaat cgaagttttc cgccccagcc tgggaaaagc
     2041 gcctttttat actgctggcc caggcgtggt ggcggtggca agcgacgagc aggtggacac
     2101 ccaagggcac accctactgc cgctcgatgc gccggaaaaa atcgccgatt tcattctggc
     2161 gcagatgatg gcggcaccat gatccctggc gtgatcctgg ccggcgggcg ttcgtcgcgc
     2221 atgggcgggg gcgataaagg gctgctcacg ctgggcgggc atagcatgct cgaacatgtg
     2281 gtggcggcat tgcggccgca gaccagcgtc ctgatgctga acagcaatag cggaccggaa
     2341 ttattctcag cacttgggct ggaagtccgc gcggatgtcc tgcccggccg gctggggcct
     2401 ctcgccggca ttcacaccgc catgctatgg gcacgcgcac agggcgcgga aacggtgctc
     2461 accgtgcccg gcgattgccc gtttctgccc acagacctcg tgcaaaaact cacagcagca
     2521 cggtgcgaag acgaagcggt gatcgcggca agcagcggcc agacccatcc cgtagtcggg
     2581 ctatggccct gtgcgctggc ggaacatctg caggtggtgc tgcaaggcgg catgcgccgc
     2641 gtgcgggatt ttctggcgga aattccgcat gtgaatgtgg aattccccgc aagcgaaccg
     2701 gacccgttct ggaacgtcaa cacaccggaa gatttgcaac gcgcgcaagc actactcacg
     2761 cgcaacccgc caccacccat agcacaagcc tccgccctca tttggcgcaa cgcgacgcaa
     2821 aagccggcaa cccgcgccct gccggaagaa gtcgccgtgg ccatgagcta tgaccgcgag
     2881 agttttgccg tgatgatggc gagccccacc tcactcgagg atttctgcat cggattctcg
     2941 ctctccgaag gcatcatcga taaaatttcg gatatcgtcg cgctcgacat catcacggtc
     3001 gaagccggga tcgaatgccg catgagtctt gccgccccgg cacgcgagcg gctgcaggcg
     3061 cgcaagcggc gcatcgccgg accggtggga tgcgggctgt gcgggctgga aagcctgcag
     3121 gaggcatcaa aaattttacc ccgcgtgacg gcggcgcaaa acttcaccgc acagcacatc
     3181 gcagacggat tccgccgcat gacggcggcg caagccctca accaggcaac gcacgccgtt
     3241 cacgccgccg ccttcctcac accggaccaa accctgctgg tgcgcgagga tatcggccgc
     3301 cataacgcgc tggacaaact catcggcgcc gtggcgcgcc agggcggcac gggtgccaag
     3361 ggcgccgtgc tgctcaccag ccgcgtctcg ctggacctca tccagaaaac cgcctcattc
     3421 ggcgcgggca tcctcgccgc catctcggtc cccaccgcgc gcgccgtgcg cgaggcggag
     3481 gcggccggca tcaccctcat cgccgtggcg cgcgatgacg ggttcgagct tttcactcac
     3541 ccggaacgaa tttttactcc ccccacagga tgcagcgtaa cagcaaagcc cgaatagcgt
     3601 gccatgccgg tgagccggtc ggcagcctgg gcatcggtca gccgattcac attggcaccc
     3661 tcatgcccat gcgggaagga cacaacaccg cgccgcatcc cctcatccag cttcaccatg
     3721 cccgttacct cgcc
//
LOCUS       DASQCV010000317         2498 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3054729, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000317 DASQCV010000000
VERSION     DASQCV010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2498
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3054729"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(153..557)
                     /locus_tag="VEQ16_04780"
     CDS             complement(153..557)
                     /locus_tag="VEQ16_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009539041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2237 domain-containing protein"
                     /protein_id="HYP63177.1"
                     /translation="MPWDISNGGGGRRQSLNVLGGVLQPCSYNPLTGFYRDGCCTTGP
                     DDVGSHTVCVEMTEEFLAFSKGQGNDLSTPRPEFNFAGLQPGDRWCLCAPRWLEAYEA
                     GAAPRVFLQASEIEALQWCRLEVLQRYAVDAA"
     gene            768..>2498
                     /locus_tag="VEQ16_04785"
     CDS             768..>2498
                     /locus_tag="VEQ16_04785"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HYP63178.1"
                     /translation="MKLSLPADSLPIQEMFERFFATESTPARVRAAEPVGFDAALWQE
                     LIALDAPFIRLAASAGGGEMSLFDTCLMLEQAGRRLAAAPLAEAVVSLRILGEVGGET
                     AHQWIERVRNGAVLTLALHQTEAGKPQLVPGGAAAQGILTFDGKELAIELPAAPLDAP
                     FTLGGNAVGTFTPGAGERHVLSSNADAGTIWEAGVEEWKILTSAALIGMAHEVLSMAA
                     AYASERIAFGQPIGTYQGISHKLADDIIDADGAAMLLWQTLRRIADSDANAGADIAGL
                     FWWACKSASNSVAHALHTFGGYGLTNEYDLQLYHRRAKSWALVLGDPRQELIRAGRRL
                     YLGEATSLPDVGLVDIDFEPPQGGQELAAETRALFKQILDPAKHRLGEANFESHDWEV
                     HRAMGAAGLLYPNWPEKWGGRGADADSTRASLAVWQEVGYAGLPRSTTSMIGHIVQIF
                     GTPELQDEVLLRMGRGDISACLGYTEPSGGSDAFAAKTRAVKDGEEWVINGQKMFTSG
                     AEYASYVIMITRTDPEAPKHKGITIFLVPLNLPGIEIHPVHTFMDERTNATFYADVRI
                     PDRYRLGPING"
BASE COUNT          463 a          883 c          736 g          416 t
ORIGIN      
        1 ctgaatgtca ctggccggct gcggcatgaa gtctcaaccc gagcaagagg gtggcggcca
       61 agctgatagc agaagtaagg aggatggtct gcctaataac aataattagg ttagcacatc
      121 tgtcgtataa ggcaagccgc gcgtccgctt ctttacgccg catcaaccgc gtagcgctgc
      181 agaacctcca gccggcacca ttgcagcgcc tcgatctcgg aggcctgcaa aaacacgcgc
      241 ggcgcagctc ctgcctcgta ggcttcgagc cagcgcggcg cgcacaggca ccagcggtcg
      301 ccgggctgca gcccggcaaa gttgaattcc gggcgcggcg tgctgagatc attcccctgc
      361 cccttgctga aggctagaaa ttcctcggtc atttccacgc acaccgtatg gctgccgaca
      421 tcatccggcc cggttgtgca gcagccatcg cggtagaagc cggtcagcgg gttgtaggag
      481 cagggctgca gcacaccgcc cagcacattc agcgattgcc gccgtccgcc accgccattg
      541 ctgatatccc aaggcattct gcccctccct ttcgccaagc cgtcccgcat catacgcctt
      601 gcgggcgcga accggaacca gcaagcgcaa ggcctggtgt tctttctctg ttccggatac
      661 gccgcccacg cgatggagtg aggctgagca ctcccgacaa cctgtcagcg attgacaagc
      721 gcgtcctttc cagaaaatgc cgatggcaaa cacttgagga gactttcatg aaactcagcc
      781 tgccagccga ctctctcccc atccaggaga tgttcgagcg gttcttcgcc acggaatcga
      841 cgcccgccag ggtgcgcgcg gccgaaccgg ttgggtttga cgcggccctg tggcaggagc
      901 tgatcgccct cgacgcgccc ttcatccgcc tcgcggcctc ggctggcggc ggcgagatga
      961 gcctgttcga cacctgcctg atgctggaac aggccggccg ccgcttggcc gccgccccac
     1021 tggccgaggc agtcgtctcc ctgcgcatcc tcggcgaggt gggcggcgag acggcgcatc
     1081 aatggatcga gagagtgcgc aacggcgccg tgctgaccct cgctctgcat cagacggaag
     1141 ccggcaaacc ccaactcgtg cccggcggcg cggcggcgca gggcatcctc accttcgacg
     1201 gcaaggaact cgccatcgaa ctccccgccg ccccgctgga cgcccctttc accctgggcg
     1261 gcaacgcggt cggcacattc acgccaggtg ccggcgaacg ccatgtgctc tccagcaacg
     1321 ccgatgccgg caccatctgg gaagccggcg tcgaggaatg gaaaatcctc acctccgccg
     1381 ccctcatcgg catggcgcac gaagtgctgt ccatggccgc cgcttatgcc tccgagcgca
     1441 tcgccttcgg ccagcccatc ggcacctatc agggcatttc ccacaagctg gccgatgaca
     1501 tcatcgacgc cgacggcgcc gccatgctgc tatggcagac cctgcgccgc atcgccgaca
     1561 gcgacgccaa tgccggcgcc gatatcgccg gcctgttctg gtgggcctgc aagagcgcgt
     1621 ccaacagcgt cgcgcacgct ttgcacacgt tcggcggcta tggcctcacc aacgagtatg
     1681 atttgcaact ctatcatcgc cgcgccaaga gctgggcgct ggtgctgggc gacccgcgcc
     1741 aggagctcat ccgcgccggc cgccgcctct atctgggtga agccacgagc ctgccggatg
     1801 tcgggctcgt ggacatcgat ttcgagccgc cccagggcgg gcaggagctg gccgcggaaa
     1861 cccgcgcttt gttcaaacag atcctcgatc ccgccaagca ccgcctgggc gaagccaatt
     1921 tcgaatcgca tgattgggag gtccatcgcg ccatgggcgc ggctgggctg ctctacccca
     1981 actggcccga gaaatggggc ggccgcggcg ccgatgccga ctccacccgc gccagcctcg
     2041 ccgtgtggca ggaggtcggc tatgccggct tgccgcgcag caccacctcc atgatcggcc
     2101 atatcgtgca gatcttcggc acgccggaac tgcaggacga agtgctgctc cgcatgggcc
     2161 gcggcgatat cagcgcctgc ctcggctata ccgaaccctc cggcggttct gacgccttcg
     2221 ccgccaagac tcgcgccgtg aaggacggtg aggaatgggt catcaacggg cagaaaatgt
     2281 tcacctccgg cgccgaatac gccagctacg tgatcatgat cacccgcacc gacccggaag
     2341 cgcccaagca taagggcatc accatcttcc tggtgccact caatctgccc ggcatcgaaa
     2401 tccaccccgt ccacaccttc atggatgaac gcaccaacgc caccttctat gccgatgtgc
     2461 gcattccaga ccgctaccgc ctaggcccta tcaatggc
//
LOCUS       DASQCV010000318         4817 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1065314, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000318 DASQCV010000000
VERSION     DASQCV010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4817
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1065314"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2317
                     /locus_tag="VEQ16_04790"
     CDS             <1..2317
                     /locus_tag="VEQ16_04790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DUF294 nucleotidyltransferase-like
                     domain-containing protein"
                     /protein_id="HYP63179.1"
                     /translation="GAWELNYSSDIDLVLLFDPDNPAYGPEATAQMARLARDLTNLLA
                     TRDENGYVFRVDLRLRPDPSATPLVVALPTALTYYESQGRTWERAAFSKARPVAGDIA
                     LGEQFLSAIRPFIWRKYLDFAAIADIHEMKRQIDAQNGSHGLLGHDVKRGVGGIREIE
                     FIVQTLELVWGGQDPSLRIPATLAALPAMAKARHLTERAAKELAADYRELRRVEHRLQ
                     MVADRQTHSLPTSEAWLDGFITFLGAPDFRKSFPRLLARVHDHFRHFFDTDDDAPVEI
                     DPGRDGPPPERFRAHLHTLGFRDERHIAERLRDWASGRMAALRTPRAREILDGLVPHL
                     LNALSAQPDPDRAFALFDTLIGQQRAGVQLLSLFQRNPALLRRLAAVLGASPALAEHL
                     AQDPYALEVLLNPTARFAAPKPVLRRLLAEAEDLEQTTAITRNFVRREEFHLSVATLE
                     GLMDADEAGRLRSALAESSLSLLLPLVLAAHKKRHGTVRGARFAVVALGKAGAGEMLA
                     GSDLDLMMIYDHAPATIAPTPWFVRLSHAFTAALTARGREGPLYHIDMRLRPSGNAGP
                     VAVSLSAFRQYHAHESWTWERLALTRARVMAATPGFAPVVREAIGQALRRAEAAPKIL
                     ADTAAMRDRLGEELHPRGPWDVKTMQGGMMEVMFIAQALQLIHGPADPALFHPNTGTA
                     LAALGEAGHLRAEDSALLAQADFLWRTVQSMNRITGLPDAATAPPPAMLAPLLRATGS
                     EDLPALRELMAETASAVQARFNHLIREGAKT"
     gene            2314..2778
                     /locus_tag="VEQ16_04795"
     CDS             2314..2778
                     /locus_tag="VEQ16_04795"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HYP63180.1"
                     /translation="MSLTEGAKAPDFSLPATGGRTVSLKELKGRPFVLYFYPRADTPG
                     CTKEACAFQEGLPDFSKLGVTVIGVSKDSMKALEKFATKYNLTFPLASDPEAKMIEAY
                     GAWQEKSLYGRKYMGIERSTVLVSEAGKVAKHWPKVKVAGHAEEVLAAVQAL"
     gene            2947..4056
                     /locus_tag="VEQ16_04800"
     CDS             2947..4056
                     /locus_tag="VEQ16_04800"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: protein motif:HMM:TIGR00254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0052621 - diguanylate cyclase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sensor domain-containing diguanylate cyclase"
                     /protein_id="HYP63181.1"
                     /translation="MNEILEVRHDVPAASLANQILREEAEAARLQALENYEILDSAPE
                     KSYDDIARLTAYVCGAPAALISFYGGNQQWLKSRYSTGHFAGKALALPPPAMLCQRML
                     QQPGKVLQIADTGLDETLAALHQPQGVAKFRFYAAMPIYSPSGDILGALTVLDKRTRT
                     LAPEQCQALETLARQIMELLEMRRTLIGLSDANAKLGQQNVTDALTGVPNRRAYDQKL
                     TEEFSRAKRTGAPLSLLLIDIDHFKEYNDKFGHPAGDTALQSVARVLMSSLRPYDFLA
                     RYGGEEFVIILPSTDLTDAIVVAERVRNLVASSEFPHRKLTISIGVARLDVDAGARAL
                     VQAADNGLYRAKAAGRNKVLVGKLNNNSPVGSATP"
     gene            complement(4078..>4817)
                     /gene="mutM"
                     /locus_tag="VEQ16_04805"
     CDS             complement(4078..>4817)
                     /gene="mutM"
                     /locus_tag="VEQ16_04805"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HYP63182.1"
                     /translation="DIRFPVPPELPATLTGARVTGFRRRGKFMLMRLDNGWSLLIHLG
                     MSGRMLIGGAAGTAHEHFVLETEDGGRVGFVDPRRFGVLDLVPTDEEDGHRLLAGMGP
                     EPLGNEFSAPILAASLKGKATAIKLALLDQRIVAGIGNIYASEALFRAFIDPRRAAGK
                     ISRPRIEALVQAIRDTLNEAIAAGGSSLRDYVQPDGELGYFQHAWKVYGRTGEPCERC
                     PGPALCGGIKCITQGGRSTFYCARTQK"
BASE COUNT          871 a         1630 c         1485 g          831 t
ORIGIN      
        1 cggcgcctgg gagctgaatt attcctccga tattgatttg gtgctgctct tcgaccctga
       61 caatcccgcc tatggccctg aagccacggc gcagatggcg cgcctcgccc gcgacctcac
      121 caacctgctc gcgacgcgcg acgagaatgg ctacgtgttt cgcgtcgatt tgcggctgcg
      181 cccggacccg tccgcgacgc cgctggtcgt cgccttgcct accgcgctaa cttattacga
      241 gagccagggc cgcacctggg agcgcgccgc cttctccaag gcaaggcccg tggcgggcga
      301 catcgcgctg ggcgagcagt ttttatccgc gatccgcccc ttcatctggc gcaaatatct
      361 cgatttcgcg gccattgccg acatccatga gatgaagcgg cagatcgatg cgcagaatgg
      421 cagccacggg ctgctcggcc atgacgtgaa gcgcggcgtg ggtggcatac gcgagatcga
      481 gttcatcgtg cagacgctgg agcttgtctg gggcgggcaa gacccgtcgc tgcgcattcc
      541 cgccaccctg gccgccctgc ccgccatggc caaggccagg cacctgacgg agcgcgccgc
      601 aaaggagctc gccgccgatt accgcgaatt gcgccgcgtg gagcacaggc tgcagatggt
      661 ggcggaccgc cagacccaca gcctgcccac cagcgaggcc tggctggacg ggttcatcac
      721 ctttctcggc gcgcccgatt tccgcaaaag cttcccccgc ctgctggcgc gggtgcatga
      781 ccatttccgc catttcttcg ataccgatga tgacgcgccg gtcgagatcg acccgggccg
      841 cgacggcccg ccgccggagc ggttccgcgc ccatctgcac acgctcggtt ttcgtgatga
      901 acgccatatc gccgagcgtc tgcgcgactg ggccagcggc aggatggcgg ctttgcgcac
      961 cccgcgggcg cgggaaattc tcgacgggct ggtgccgcat ctgctgaacg cgctctccgc
     1021 ccagcccgac ccggacagag ctttcgcgct tttcgacacg ctgatcggcc agcagcgcgc
     1081 gggcgtgcag ctgctctctc tgttccagcg caacccggcc ttgctgcgcc gcctcgccgc
     1141 cgtgctgggc gcctcgccag cactggccga acatctggcc caggacccct atgcgctgga
     1201 ggtgctgctc aaccccaccg cccgcttcgc ggcgcccaag ccagtgttgc gccggttgct
     1261 ggcggaggcg gaggacctgg aacaaaccac cgccatcacg cgcaatttcg tgcggcgcga
     1321 ggaattccac ctctccgtcg ccacgctgga agggctgatg gatgcggacg aggccgggcg
     1381 gctgcgcagc gcgctggccg aatcctcact ctcgctactg ctgcctctgg tgctggcggc
     1441 gcacaagaaa cgccatggca cggtgcgcgg ggcgcgcttc gccgtggtgg ccctgggcaa
     1501 ggcgggggcg ggcgagatgc tggccggctc ggatctcgat ctgatgatga tctatgacca
     1561 tgccccggcc actatcgccc ccacgccctg gttcgtgcgg ctgagccatg ctttcaccgc
     1621 cgccctcacc gcgcgcgggc gggagggacc gctctaccat atcgatatgc ggctgcgtcc
     1681 ctctggcaat gccgggccgg tcgccgtctc tctgtccgct ttccgccaat atcacgcgca
     1741 tgaatcctgg acctgggagc gcctggccct cacccgcgcc cgcgtgatgg cggcaacgcc
     1801 cggcttcgcc cccgtggtgc gcgaggccat cggccaggcc ctgcgccgcg ccgaggcggc
     1861 accgaaaatc ctcgccgaca ccgccgccat gcgcgacaga ctgggcgagg aactgcaccc
     1921 gcgcggcccc tgggacgtga aaaccatgca aggcggcatg atggaggtaa tgttcatcgc
     1981 ccaggcgctg cagcttatcc acggcccagc cgacccggct ttgttccacc ccaacactgg
     2041 gaccgccctc gccgcgctgg gcgaggcggg gcatctgcgc gcggaggatt ccgccctgct
     2101 ggcacaggcg gattttctgt ggcgcaccgt ccagagcatg aaccgcatca ccggcctgcc
     2161 cgatgccgca accgcgccgc cacccgccat gcttgcgccg ctactgcgtg ccaccggcag
     2221 cgaggattta cccgccctgc gcgagctaat ggcggaaact gccagtgctg tgcaggcaag
     2281 attcaatcat ctcatccgcg aaggagccaa gacatgagcc tgaccgaagg ggcgaaggcg
     2341 cccgatttct ccctccccgc cacgggcgga cgcactgtgt cgctgaagga gctgaagggc
     2401 cggcccttcg tgctctattt ctacccgcgc gccgacacac ccggctgcac caaggaagcc
     2461 tgcgccttcc aggaagggct gccggatttt tccaagctcg gcgtcacggt catcggcgtg
     2521 tccaaggatt ccatgaaggc gctggagaaa ttcgccacga aatataacct cacttttccg
     2581 ctcgcttccg accctgaggc gaagatgatc gaggcctatg gcgcctggca ggaaaagagc
     2641 ctgtacgggc gcaaatatat gggcatagag cgctccaccg tgctggtgag cgaagctggc
     2701 aaggtggcga aacattggcc aaaggtaaaa gtagctggcc atgccgagga ggttctggcc
     2761 gctgtgcagg cgctttagcg cggctacaaa actcaacaaa tcctcaacgt ctttcatcat
     2821 aaatcttaac gcaagcaggt ttactgttag ataatttttt gagatcagtg cgtttataca
     2881 ccgaacttca tcgttaatta acctgttcca ttccagaata aagcaccgtt aggaaaggtg
     2941 aaggacgtga acgagattct tgaagttcgg catgacgtgc cggcggccag cctggccaac
     3001 caaatcctcc gcgaggaggc agaggccgca cggctgcagg cgctggagaa ttacgagatt
     3061 ctcgatagcg cgccggaaaa atcctatgac gatatcgcac ggctcaccgc ctatgtgtgc
     3121 ggcgcaccgg cagcgctgat cagcttctac ggcggcaacc agcaatggct gaaatcgcgc
     3181 tacagcactg gccattttgc cggcaaggcg ctcgctttgc caccgcctgc catgctgtgc
     3241 cagcgcatgt tgcagcagcc gggcaaggtg ctgcaaatcg ccgatacggg actcgacgag
     3301 acgttagccg ccttacacca gccgcaaggg gtagccaaat tccgattcta cgcagccatg
     3361 ccgatctatt cgccgtccgg cgatattctc ggcgcgctca ccgtactgga taaacgcacc
     3421 cgcaccctgg ctccggaaca atgccaggcg ctggaaacgc tcgcgcgcca gatcatggaa
     3481 ttgctggaaa tgcgccgcac gctcattggt ctgtcggacg ccaatgccaa actcggccag
     3541 cagaacgtga ccgacgccct gaccggcgtg cccaaccgcc gcgcctacga ccagaagctg
     3601 acggaggaat tctcccgcgc caagcgcacc ggtgcgccgc tctcgctgct gctcatcgat
     3661 atcgatcatt tcaaggaata taacgataaa ttcggccatc cggcgggtga cacggcactg
     3721 caatcggtgg cgcgcgtgct gatgtcgagt ttgcggccct atgatttcct ggcgcgctat
     3781 ggcggcgagg aattcgtcat catcctgccc tccaccgacc tgaccgatgc catcgtggtg
     3841 gcggaacggg tgcgcaatct ggttgcgagt tcggaatttc cgcaccgcaa actcaccatc
     3901 tccatcggcg tggcacggct cgatgttgat gccggcgcgc gtgcgctggt gcaggcggcc
     3961 gataacgggc tctaccgcgc caaggcggcg gggcggaaca aggtgctggt cggcaagctc
     4021 aataataatt cccccgtcgg ttccgccacg ccgtagccgg gcacgaaccg cgagccatta
     4081 tttctgcgtc cgcgcacaat aaaacgtgct gcgcccgcct tgcgtgatgc attttatccc
     4141 gccacacagc gcaggccccg ggcagcgctc acacggctcc ccggtccggc cgtaaacctt
     4201 ccaggcatgc tggaaatagc caagctcgcc atcgggctgc acgtaatcgc gcaacgacga
     4261 cccgcccgcg gcgatggcct cgttcagcgt gtcgcgtatg gcctgcacca gcgcctcaat
     4321 gcgcgggcgg gagattttgc ccgccgcgcg gcgcgggtcg atgaaggcac ggaacaaagc
     4381 ctcggaggca tagatattgc cgatgccggc gacaatgcgc tggtcgagca gggcgagctt
     4441 gatcgccgtt gccttgccct ttagcgacgc cgctaggatg ggggcggaaa attcattgcc
     4501 cagcggctcc ggccccatgc cggccagcag cctgtggccg tcttcctcgt ccgtcggcac
     4561 taagtccagc acgccgaagc ggcgcggatc gacgaagccg acgcggccgc catcctccgt
     4621 ctccagcacg aaatgctcat gtgccgtacc cgccgcgccg ccgatgagca tgcgcccgga
     4681 catgccgaga tggatgagca gcgaccagcc attatcgagg cgcatgagca tgaatttgcc
     4741 gcgccggcgg aagcccgtca cccgcgcccc ggtaagcgtg gcgggcagct cgggcggcac
     4801 ggggaagcgt atatccg
//
LOCUS       DASQCV010000319         1648 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2888914, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000319 DASQCV010000000
VERSION     DASQCV010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1648)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2888914"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1450
                     /locus_tag="VEQ16_04810"
     CDS             <1..1450
                     /locus_tag="VEQ16_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010513203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HYP63183.1"
                     /translation="SVDRGVTIGYFSQDVGEMSGRSAVSEVMDGAGPVSAVASEMKEL
                     EAAMADPDRADDMDEIIARYGEVQARFEELDGYALEGRAREVLAGLSFSQEMMDGDVG
                     NLSGGWKMRVALARILLMRPDVMLLDEPSNHLDLESLIWLEQFLANYDGALLMTSHDR
                     EFMNRVINKVIEIDAGNLTSFSGDYEFYARQAALNEKQQQAQFERQQAMLAKEIAFIE
                     RFKARASHAAQVQSRVKKLDKIERVEPPKRRQTVEFEFRPAPRSGEDVANLRGVSKAY
                     GSKVIYDGLDLLIRRKERCCVLGINGAGKSTLLKLVTGTTTPDAGSVTLGGSVKMGYF
                     AQHAMDLLDGGATLFEALDAAFPHAGQGVLRNLAGAFGFSGGEVEKRVRVLSGGEKAR
                     LVMAMMLFDPPNFLVLDEPTNHLDLATKEMLIKALSNYEGTMLFVSHDRHFLSELSNR
                     VLELTPGGIHQYDGGYTEYVARTGQEAPGLHA"
BASE COUNT          313 a          488 c          546 g          301 t
ORIGIN      
        1 ctccgtcgat cgcggcgtca ccatcggcta tttcagccag gatgtcggcg agatgtccgg
       61 ccgcagcgcg gtcagtgagg tgatggacgg cgccggcccg gtcagcgcgg tagcctcgga
      121 aatgaaggag ctggaagccg cgatggcgga tccggaccgc gccgacgaca tggacgagat
      181 catcgcccgc tatggcgagg tgcaggcccg cttcgaggaa ctggacggtt acgcgctgga
      241 gggccgcgcc cgcgaagtgc tggcgggcct gagcttcagc caggaaatga tggacggcga
      301 cgtcggcaac ctctcgggcg gctggaagat gcgcgtggcg ctcgcccgca tcctgctgat
      361 gcgcccggac gtgatgctgc tcgacgagcc gagcaaccat ctggacctcg aaagcctgat
      421 ctggctggag caattcctcg caaattatga cggtgccttg ctaatgacct cgcacgaccg
      481 cgaattcatg aaccgggtga tcaacaaggt gatcgagatc gatgccggta atctcaccag
      541 cttttccggc gattatgaat tctatgcgcg ccaggcggcg ctgaacgaga agcagcagca
      601 ggcgcagttc gagcgccagc aggcgatgct ggcgaaggag atcgccttca tcgagcgctt
      661 caaggcgcgc gcctctcatg ccgcgcaggt gcagagccgg gtgaagaagc tggacaagat
      721 tgagcgcgtg gaaccgccca agcgccgtca gaccgtcgag ttcgagttcc gtccggcgcc
      781 gcgctccggc gaggatgtgg cgaatttgcg cggcgtgtcc aaggcctatg gcagcaaggt
      841 gatctatgac gggctggatt tgctgatccg ccgcaaggaa cgctgctgcg tgctcggcat
      901 caatggcgcc ggcaagtcca cattgctgaa gctcgtcacc ggcaccacga cgccggatgc
      961 gggcagcgtg accttgggcg gcagcgtgaa gatgggctat ttcgcccagc acgccatgga
     1021 tctgctggat ggcggcgcga cattgttcga ggcgctggat gccgccttcc cacatgccgg
     1081 ccagggcgtg ctgcgcaacc tcgccggcgc gttcggcttc tcgggtggtg aggtggaaaa
     1141 gcgcgtgcgc gtgctctccg gcggcgaaaa agcgcggctg gtgatggcga tgatgctgtt
     1201 cgacccgccg aatttcctcg tgctggacga gccgaccaac catcttgacc ttgccaccaa
     1261 ggaaatgctg atcaaggcgc tttcaaatta tgaaggcacc atgctgttcg tttcgcacga
     1321 ccggcatttt ctcagcgagc tgtccaaccg tgtgctggag ctgacaccgg ggggtatcca
     1381 tcaatatgat ggcggctaca ccgaatatgt ggcgcgcacc ggccaggagg cgccagggct
     1441 gcacgcctga cccaacctgc gccaggctcc aaacctggct tcaatggctc agtaattgaa
     1501 ccggtgcgat tcagcgcgtc acttcatggc gcgtgatttg gccggctctg gcggccagtc
     1561 ttctgcgccc attcttcgat cagcccgtca taaagcggat ggccgaggag gtcgtatttc
     1621 tccggaaagg caaaattggc gctcgtaa
//
LOCUS       DASQCV010000320         3174 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3055585, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000320 DASQCV010000000
VERSION     DASQCV010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3174
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3055585"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(312..1172)
                     /locus_tag="VEQ16_04815"
     CDS             complement(312..1172)
                     /locus_tag="VEQ16_04815"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63184.1"
                     /translation="MTQQDTRVALITGASSGIGKQAALVLAAQGFRIIGTGRDAGSMA
                     AAEAEIRAAGNGDVTMLQADLSLLADARRLADEVKRLTPRLDLLLNNAGGMASDLVMT
                     SEGLEANFAGNHLGPFLLTNLLLPLLRATAAKAAPGSVRILNTSSDASEMIPGVNLDD
                     IQGLANFNVGAAYCRGKLANVLHARALAGRLAADGIVAHSYHPGAVDSNFFTYAPADT
                     RERVKDLPKATEAEGADTLVWLATAEEPGQSSGLYWHKRALRTPNKLVEDADFVERFW
                     QKSAELTGQA"
     gene            complement(1187..1588)
                     /locus_tag="VEQ16_04820"
     CDS             complement(1187..1588)
                     /locus_tag="VEQ16_04820"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HYP63185.1"
                     /translation="MAEDRYEKGLKLFAEIYGEEMAAGAHARVAAGDGFCIEQSRWTM
                     EFSFGSVWARTAMERKLRSAATLGMLVALRQHDEIKYHTKMGMKNGLSRTELEEIIYT
                     AIPYAGFPAAQSAKKAMLEAFAEMDAESGTA"
     gene            complement(1639..2484)
                     /locus_tag="VEQ16_04825"
     CDS             complement(1639..2484)
                     /locus_tag="VEQ16_04825"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP63186.1"
                     /translation="MLHLDGLGYKGKTCVVTGGASGMGEQVARILGELGAVVHIVDIR
                     EPKVQNAGFHQCDLSDFAAVRGTAEKLRSLAPIHFLFPCAGLPPEAKGALYCMKVNYI
                     GTRHFVENLLPALADGASIALISSDAALGWQKNVAQSLQMLAISDPDKALAWVEEDPA
                     NRLRDGYTSSKEMLAVWVQHAAVKLGNERRIRLNAIGPCPTKTAFMDFQADKLPEGFL
                     DAWPYPSLGRMATAEEQAWPLVLLACPLNAAVTGSFLYTDQGFASGVFTGAIDPSFMM
                     GAKKA"
     gene            complement(2567..>3174)
                     /locus_tag="VEQ16_04830"
     CDS             complement(2567..>3174)
                     /locus_tag="VEQ16_04830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019462990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HYP63187.1"
                     /translation="YLAEPRFGGVELSHVAGIWSVITALTAACATLLALRGRAIPSVR
                     ETLDAGANAAILPIFSVASLAGFGAVIASLPAFASVRDWVLTVEGGPLVSLAIATNLL
                     AALTGSASGGLTIALDALGHTYMALAAQQGIAPALLHRVAAISAGTLDILPHNGAIVT
                     LLAVSNCTHKESYGDIVMTGIVNAIVALVVVIALGELVGSF"
BASE COUNT          580 a         1032 c          978 g          584 t
ORIGIN      
        1 gatcgtccag tttccagtga aagacatgag gcctccttga gccgttagac atcccatggc
       61 ggggaagatg aggacatcgc gtgtggggta tgtgtccgat aaacaatatt ttagctatcg
      121 ggaatagatg taattttgca ctgcgcaaaa atacagggct tttcttcctg ctggaaattc
      181 tgaaaattca tatccggaaa agaccggaaa tgaggggaat ttcctttgtg tgactttcag
      241 ccatggctat ggccgctcgc atctgtgcgc cacgccgccc tcggcatgca tgagcgtaga
      301 ggcagccgct gtcaggcttg gccggtcaac tccgcgctct tctgccaaaa gcgttcgacg
      361 aaatccgcgt cctcgaccag cttgttgggt gtgcggaggg cgcgcttgtg ccaatagagc
      421 ccgctgctct gcccaggctc ctcggctgtc gccagccaga ccagagtgtc cgccccttcc
      481 gcctcggtcg ccttgggcag gtctttgacc cgctcgcgcg tatcggccgg cgcataggtg
      541 aagaaattgg aatcgaccgc acccggatga taagagtgtg caacaatccc atccgccgcc
      601 aaccgcccgg ccaaagcgcg cgcatgcaac acattggcca gcttgccgcg gcaataggcg
      661 gcgccgacat tgaaattcgc cagcccctgg atatcgtcca gattcacgcc tggaatcatc
      721 tcgctggcat cggaggaggt gttgagaatg cgcacgctcc ccggcgccgc tttcgccgct
      781 gtggcgcgca gcaggggaag cagaagattg gttagcagga aaggccccag gtgattcccg
      841 gcgaaattcg cttccagccc ttccgaagtc atcaccaggt cgctcgccat gccgccggca
      901 ttgttcagca gcagatccag ccgtggcgtc aggcgtttca cctcatccgc gagccgcctt
      961 gcatcagcca agagcgaaag atccgcctgc agcatggtca cgtcgccatt gccggcggcg
     1021 cgaatttccg cctccgccgc cgccatgctc ccggcatcgc gtccggtgcc gatgatgcgg
     1081 aagccttgcg ccgccagcac cagcgccgcc tgcttaccga tgccggagct cgccccggtg
     1141 atgagggcca cgcgcgtgtc ctgctgcgtc atcgtcttgc tccctttcag gccgttccgc
     1201 tttccgcatc catctcggca aacgcttcca gcatcgcctt cttcgcactc tgcgcggcgg
     1261 gaaagccggc atagggaatg gcggtgtaga tgatctcttc aagctccgtg cgggagagcc
     1321 cgttcttcat gcccatcttg gtatggtatt taatctcgtc atgctgacga agtgccacga
     1381 gcatgccgag cgtcgcggcg ctacgcagct tgcgctccat cgccgtgcgc gcccagaccg
     1441 acccgaagct gaattccatg gtccagcgcg actgctcgat gcagaaccca tcccccgccg
     1501 caacgcgcgc atgcgccccg gcggccattt cctcgccata gatctcggca aagagcttta
     1561 gccctttttc gtatcgatcc tcggccatcc gtgcctcctt atgcgtgcct ccggcgctgt
     1621 cggaggcatg gtcatgtttc aggccttctt ggcgcccatc atgaaggacg ggtcgatggc
     1681 gccggtgaac acgccgctcg caaaaccctg gtcggtatag aggaagctgc ccgtcaccgc
     1741 cgcattcagc gggcaggcca gcagcaccag cggccaggcc tgctcctcag cggtggccat
     1801 gcggccgagc gaggggtagg gccaggcatc gaggaagcct tccggaagct tgtcggcctg
     1861 gaaatccatg aaagcggtct tggttgggca ggggccgatg gcgttgaggc ggatgcgccg
     1921 ctcattaccg agcttcaccg ccgcatgctg cacccacacg gcgagcattt ccttcgagct
     1981 ggtatagccg tcgcgcaggc ggttggcggg gtcttcctcc acccaggcca gcgccttgtc
     2041 tgggtcggaa atggccagca tctgcaggct ctgcgccaca ttcttctgcc agcccagggc
     2101 ggcatcggag gagatcagcg cgatgctggc cccatcggcc agtgccggga gcagattctc
     2161 cacgaaatgg cgcgtgccga tataattcac cttcatgcag tagagcgcgc ccttcgcctc
     2221 cggcggcagg ccggcgcagg ggaagaggaa atggatcggc gccagcgaac gcaacttctc
     2281 ggcggtgccg cgcacagctg cgaaatcgga caggtcgcat tgatggaacc cggcattttg
     2341 caccttgggc tcgcggatat cgacgatatg cacgacggca cccagctcac ccaggatgcg
     2401 cgccacctgc tcgcccatgc ccgaggcacc cccggtgacc acgcaggtct tgcccttata
     2461 tcccaacccg tcgagatgca gcatcgcgtc ctccttgctt gtttttgtcc gccgcctatg
     2521 ccgtctggcg gcgtagatcg tcaatactat cttcagcccc gccggcttag aacgagccca
     2581 ccagctcacc cagcgcgatc accaccacca gcgcgacgat ggcgttgacg atgccggtca
     2641 tcacgatgtc gccatagctt tccttgtggg tgcaattgct tacggcgagc agcgtcacga
     2701 tcgcgccatt atgcggcaga atatccagcg tgccagccga gatggcggcg acccgatgca
     2761 gcaacgccgg ggcgatgccc tgctgcgccg ccagtgccat gtaggtatga cccagcgcgt
     2821 cgagcgcgat ggtgagcccg cccgaggccg agccggtgag ggcggcgagc aggttggtgg
     2881 cgatggcgag cgagacgagc ggtccgccct cgacggtgag cacccagtcc cgcaccgagg
     2941 cgaaagcggg cagggaggcg atgaccgcgc cgaacccggc caggctggcg acgctgaaaa
     3001 tgggcaggat ggcggcattg gcgccggcat ccagcgtttc ccgcacgctg ggaatggcgc
     3061 gcccgcgcaa ggccagcagc gtggcgcagg cggcggtgag cgcggtgatg accgaccaga
     3121 ttccggcaac atgagataat tccacgccgc cgaagcgcgg ctcggcgaga tagg
//
LOCUS       DASQCV010000321         3109 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1397460, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000321 DASQCV010000000
VERSION     DASQCV010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1397460"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..877)
                     /locus_tag="VEQ16_04835"
     CDS             complement(134..877)
                     /locus_tag="VEQ16_04835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYP63188.1"
                     /translation="MKILSFETISNKKDLLTAFLRSRLAIVDETNDPEEALDLVKFYD
                     YDVILLRLSEERLGDLDIVRKLRLARVRAPIVAVARSMNEAARLRVLQAGADDLIVDA
                     LSHEEIFMKVQNLIRRSRGFQENALRIGAVEINMNAKKIYAKGKPVTLTKKEYQIAEI
                     LALRKGVVLSKEAILDHLYGGLDEPNPKIIDVFICKIRKKLQALGVDDFIETNWGRGY
                     MVIDHRQDAAPADTGRGHGARDMHARAIA"
     gene            complement(1228..1683)
                     /gene="mscL"
                     /locus_tag="VEQ16_04840"
     CDS             complement(1228..1683)
                     /gene="mscL"
                     /locus_tag="VEQ16_04840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HYP63189.1"
                     /translation="MSDLLKTKLPPIKTPGWVDDFRAFIMRGNVVDLAVGVIIGAAFT
                     GIVTSLVKDVITPVIGLLTGGVDFTNHFVILKGTPANTLAEAQKAGDVTINYGLFFNA
                     LLNFLIVAAAIFWMVRLIEKVHKAPAPAAPAPTATETLLTEIRDILQTK"
     gene            1930..2883
                     /locus_tag="VEQ16_04845"
     CDS             1930..2883
                     /locus_tag="VEQ16_04845"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HYP63190.1"
                     /translation="MRQYLEFEKPVAELEAKIEELRLMTAPGEINIADEVAKLSAKAD
                     AQLKTIYGRLTPWQKTQVARHAERPKAASVIRTLIEDFTPLAGDRAFADDAAVIGGMG
                     TFRGTAVMVIGTEKGTDTETRIKHNFGMAKPEGYRKARRLMELAGRFNMPILTFVDTS
                     GAFPGIEAEARGQAEAIARGIDACLSAPVPLVATIIGEGGSGGAIALAAGNAVLMYEH
                     AIYSVISPEGCASILWRDATQAPVAAEAMRITAQDLKKLGLIDEIVAEPLGGAHRAPD
                     VALIALGDAVEKQLAPLKGLAPEALKARRREKFLAMGKLGL"
     gene            complement(2924..>3109)
                     /locus_tag="VEQ16_04850"
     CDS             complement(2924..>3109)
                     /locus_tag="VEQ16_04850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia channel protein"
                     /protein_id="HYP63191.1"
                     /translation="MAVGGTHLFSIQCLGVAVTILYCAAMSWALLKLTDLLVGLRVTR
                     EEEREGLDIVLHGEQIF"
BASE COUNT          631 a          909 c          993 g          576 t
ORIGIN      
        1 gggttcgcgg cacgtgcgat gcatcatgct tcccccaccg gggagaagcg gatgcgggac
       61 atagggcaaa tagcgggggt tttgttatgc tattttagca taacaaaacc tgcgcccttg
      121 caaggttccg gcatcaggcg atggcgcggg catgcatatc gcgcgcgcca tgaccgcggc
      181 ccgtgtcggc gggcgcggcg tcctggcggt ggtcgataac catatagccg cggccccaat
      241 tggtctcgat gaaatcatcc acgccaagcg cctgcaattt cttgcggatt ttgcagatga
      301 acacgtcgat gattttcggg ttgggctcgt ccagcccgcc atagagatga tcgaggatcg
      361 cctccttgct cagcaccacg cctttgcgca aggcgaggat ctcggcgatc tgatattcct
      421 tcttggtgag ggtgaccggc ttgcccttgg cgtagatttt cttggcattc atgttgattt
      481 cgaccgcgcc gatgcgcagc gcattttcct ggaagccgcg cgagcggcgg atcaggttct
      541 gcaccttcat gaagatttcc tcgtgcgaga gggcatcgac gatgagatcg tccgccccgg
      601 cctgcagcac gcgcagccgc gccgcctcgt tcatggaacg ggcgacggcg acgatgggcg
      661 cgcggacgcg ggccaggcgc aatttacgga cgatgtcgag atcgccgagc cgctcttccg
      721 acagacgcag gaggatgacg tcgtaatcat agaatttgac cagatcgagc gcctcttccg
      781 ggtcgtttgt ctcgtccaca atggccagac gggagcggag aaacgctgtc agcagatctt
      841 ttttgttcga gattgtctca aaagataaga ttttcatcgc tacctccaga agattgagtt
      901 aaaattacaa cctacaggag ataaagtcaa taattcagtt taaccttctc gttaaacgtg
      961 taaattttta gtaagtgtta acaaaataga gcctcgccga gtcggcgctc ctccccggcg
     1021 cccgaacaaa gcataaggaa aacaattttc tggagagtga tgctgagatt tctaccggga
     1081 cactgaggaa tgaggccaaa gacgaagcgc ggccagaatt ttacccgacc tttacagtca
     1141 tggcccaggt tggtctttta tcgtaatgaa aattaatgat ttttcttggc gcggttgcaa
     1201 gcgcccgaaa cgataccgcc gggcagccta cttggtctgc aggatgtcgc ggatttcggt
     1261 cagcaatgtc tcggtggcgg tgggggcggg ggccgccggg gcgggcgcct tgtgcacctt
     1321 ctcgatgagc cggaccatcc aaaaaatggc cgccgcgacg atgaggaaat tcagcaacgc
     1381 attgaaaaac agtccgtaat tgatcgtcac gtcgccggcc ttctgcgcct cggccaaggt
     1441 gttggccggc gtgcccttga ggatgacgaa atggttggtg aaatccacgc cgccggtgag
     1501 caggccgatg accggggtga tgacatcctt caccaggctg gtcacgatgc cggtgaaggc
     1561 cgcgccgatg atcacgccga cggcgagatc gacgacattg ccgcgcatga tgaaggccct
     1621 gaagtcatcc acccagccag gggtcttgat ggggggcagc ttggtcttca gcaggtcgga
     1681 catgcgggcc tccttgttgt gtgcctgaaa tgtagggccg gaccatcatt ccgccaagac
     1741 ggcgccgtta caagagttaa ccgcttcaac acttgcccgg ctcgggactg gtttggaaaa
     1801 aaggcggtgc cgggggccgc gctgagcgcg gccaatacca cgcccaggca ggaacgcccc
     1861 gcgggaccgc aacggcgcgt aacccggctg gctttcctcc gctgttatat gtgctaaagg
     1921 cccaggccca tgcgccagta ccttgaattc gaaaaacccg tcgccgagtt ggaagccaag
     1981 atcgaggagc tgcggctgat gaccgcgccc ggcgagatca acatcgccga cgaggtggcg
     2041 aagctctccg ccaaggcgga tgcgcagctg aagacgatct atggaaggct gacgccctgg
     2101 cagaagaccc aggtggcgcg ccatgccgag cggccgaaag cggccagcgt gatcaggacg
     2161 ctgatcgagg attttacgcc gctggccggc gaccgcgcct ttgccgacga cgcggcggtg
     2221 atcggcggca tgggaacctt ccgcggcacg gcggtgatgg tgatcggcac cgagaagggc
     2281 accgacaccg agacgcgcat caagcataat ttcggcatgg ccaagcccga aggctaccgc
     2341 aaggcgcggc gcctgatgga gttggccggg cgcttcaaca tgcccatcct gaccttcgtc
     2401 gacacctcag gcgccttccc cggcatcgag gccgaggcgc gcggccaggc ggaggcgatc
     2461 gcccgcggca tcgatgcctg cctctccgcg cccgtgccgc tggtggcgac catcatcggc
     2521 gagggcggct cgggtggcgc catcgcgctc gccgccggca atgccgtgct gatgtatgag
     2581 cacgcgatct actccgtgat ctcgcccgag ggctgcgcct ccatcctgtg gcgcgacgcg
     2641 acccaggcgc cggtggccgc cgaggcgatg cgcattaccg cccaagacct caaaaaactc
     2701 gggctcatcg acgaaatcgt agccgagccg ctgggcgggg cacacagagc cccggatgtg
     2761 gcactgatcg cactgggcga cgcggtggag aaacaactgg ccccgctgaa aggtctggcc
     2821 cccgaggcgc tgaaggcgcg gcggcgggag aagttcctgg caatggggaa gctgggactt
     2881 taaggcaaaa aagccagggg ctctgcccct ggcctttctt gccttaaaaa atctgctccc
     2941 catgcagaac aatgtccaag ccctcgcgct cctcctcgcg ggtgacgcgc aggccgacga
     3001 ggaggtcggt gagtttgagg agcgcccagc tcatggcggc gcagtagagg atggtgacgg
     3061 cgacgccgag gcattggatg ctgaagaggt gcgtgccgcc cacggccat
//
LOCUS       DASQCV010000322         2422 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1066181, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000322 DASQCV010000000
VERSION     DASQCV010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1066181"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..528)
                     /locus_tag="VEQ16_04855"
     CDS             complement(<1..528)
                     /locus_tag="VEQ16_04855"
                     /inference="COORDINATES: protein motif:HMM:NF024197.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EcsC family protein"
                     /protein_id="HYP63192.1"
                     /translation="MKTPPPIPDHIARSASFLTPQEQEQLWRAAIIMADSRGLLLRLA
                     ALFGRRLDTLRSSLVQTGERLGGTAWAGLVQRAQDLVEDTLWSSYKYATFGLEAVPEF
                     ARPAQPRANRLHRLATAASGAASGFAGFPGVVFDIPFTTMTILRSIAEVARDSGEDLA
                     AEETRRACLEVLAFGG"
     gene            complement(584..952)
                     /gene="rplT"
                     /locus_tag="VEQ16_04860"
     CDS             complement(584..952)
                     /gene="rplT"
                     /locus_tag="VEQ16_04860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HYP63193.1"
                     /translation="MARVKRGVTTHARHKKVLELSKGYVGRSSTNYRIAMERLEKALR
                     YAYRDRRVKKREFRSLWIQRINAAVREHGLTYSQFIFGLKQAGLELDRKVLSAIAYDD
                     PASFAEIVQAVKGVSAAAAE"
     gene            complement(968..1171)
                     /gene="rpmI"
                     /locus_tag="VEQ16_04865"
     CDS             complement(968..1171)
                     /gene="rpmI"
                     /locus_tag="VEQ16_04865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007439030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HYP63194.1"
                     /translation="MPKLKTKSSVKKRFKITATGKVLAGPGKKRHNLYARSQKAKRQN
                     RGSQVLTHADGLTVKQWAPYGLE"
     gene            1347..1895
                     /locus_tag="VEQ16_04870"
     CDS             1347..1895
                     /locus_tag="VEQ16_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006282 - regulation of DNA repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RecX family transcriptional regulator"
                     /protein_id="HYP63195.1"
                     /translation="MAGKPPDAASLYEAALNHMARYAATEAGLARVLARRVERWGTLQ
                     GDAAEAEEIARAMRRAKAEIPAVLSRLKELGVLNDEAFAASRVRRLTREGKSRRATLA
                     HLAAKGVKAPDLPDDPDRELAAACAYLRRRRAGPFGPAPADKILAAMARGGFTQATAR
                     RALALDRETAEALINNLSTPLP"
     gene            complement(1892..>2422)
                     /locus_tag="VEQ16_04875"
     CDS             complement(1892..>2422)
                     /locus_tag="VEQ16_04875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63196.1"
                     /translation="SVQAVRLMPQTDVMGRAIRRLDNEMPSYRAVIMQAKEQAAAVKA
                     RRQAGRVALLLPAREEEAMGMSFAPPSGAGVGGEIALNLVQGARPVVPGLRRGGSVHS
                     AVAAAEAASRDADGTVKGQAYEVSPETAQAVMEPSDIRQVLDEYFFRQSRLPPNGGAA
                     FNPLLSPIWAGLKIPG"
BASE COUNT          441 a          818 c          765 g          398 t
ORIGIN      
        1 cccgccaaag gccagaacct ccaggcaggc ccggcgcgtt tcctctgccg ccagatcctc
       61 cccggaatcg cgcgccacct cggcgatgga gcgcagaatg gtcatggtgg tgaaggggat
      121 atcgaacacc acaccaggga aaccggcaaa gcccgaggcc gcgccgctgg cggccgtggc
      181 caggcggtgc agcctgttgg cgcgcggctg ggcggggcgg gcaaattccg gcaccgcctc
      241 cagcccgaac gtggcatatt tatagctgga ccagagtgtg tcctcgacca gatcctgggc
      301 gcgctgcacg aggccggccc aggccgtgcc gcccagcctt tcgcccgtct gcacaagcga
      361 gctgcgtaac gtgtcgagcc gacggccgaa cagggcggca agccggagca gcagcccgcg
      421 ggaatccgcc atgatgatgg cagcacgcca aagctgctcc tgttcctgcg gtgtgaggaa
      481 cgaggcgcta cgggcgatat ggtcaggaat gggaggggga gtcttcatgt ccagatggaa
      541 gatgaggccc atctggacat gagacaagtg aagttacgga atattattcc gcagcggcgg
      601 cgctaacgcc cttaaccgcc tgcacaatct cggcgaagga ggccggatcg tcatacgcga
      661 tggcggagag aaccttgcgg tccagctcca gcccggcctg cttcaggccg aaaatgaact
      721 ggctataggt cagcccatgc tcgcgcacgg ccgcgttgat acgctggatc cagagcgagc
      781 ggaactcgcg cttcttgacc cggcggtcgc ggtaagcata gcgcagggcc ttttccaggc
      841 gctccatcgc gatgcggtaa ttggtggagg aacggccaac atagcccttc gacagttcca
      901 gaaccttctt gtggcgggcg tgggtggtaa cgccgcgttt cacacgtgcc attgtctatg
      961 ctcctcctta ttccagaccg tacggggccc actgcttcac agtgaggccg tcagcatggg
     1021 tgagcacctg gctgccgcgg ttctggcgct tggccttctg gctgcgggca taaaggttgt
     1081 ggcgcttctt gcccgggccg gcgagaacct tgcccgtggc ggtgatcttg aagcgcttct
     1141 tgaccgatga cttggtcttc agcttcggca ttttggtctc ctgtcgctac aaccccgccg
     1201 ttaagcgggg gtcccgaaga tcggggcggc ggccaggcat gcctaatggc ccggacacgc
     1261 acgcatcacg ttttacggtg aagcggcgcc tataatggct gaacgccccc gtgacaagag
     1321 cgtttcaagg gggcaaagct gcttgcatgg caggtaaacc gccggacgcg gccagtctat
     1381 acgaagcggc actcaaccat atggcgcgtt atgccgccac ggaggcaggg ctcgcgcgcg
     1441 tgctggcgcg ccgggtggag cgctggggga cattgcaggg ggatgcggcg gaggccgagg
     1501 agattgcccg cgccatgcgc cgggccaagg ccgaaatccc agctgtgctc agccgcctca
     1561 aggagttggg ggtcttgaat gacgaggctt ttgccgcctc acgcgtccgg cgcctcacgc
     1621 gcgaaggcaa atcccgccgc gccaccctgg cgcatctggc cgccaagggg gtgaaggcgc
     1681 ccgacctgcc ggacgacccg gaccgcgagc tcgccgccgc gtgcgcctat ctgcgccgcc
     1741 gccgcgccgg cccgttcggc cccgccccgg cggacaaaat ccttgccgcc atggcccgcg
     1801 gcgggttcac ccaggccacg gcgcggcggg ctttggccct ggaccgggaa accgccgagg
     1861 cgctcatcaa taacctttcc acacccctgc cctaacccgg aattttaagc ccggcccaga
     1921 tcgggctgag cagaggattg aacgccgccc cgccattagg cggcaaacgc gattgccgga
     1981 aaaaatactc atccaacacc tggcggatgt cagacggctc cataacggcc tgggcggttt
     2041 ccgggctgac ctcatatgcc tgccccttaa ctgtcccatc cgcgtcacga gacgcagctt
     2101 cggccgcagc taccgcgcta tgcacactac cgccccgccg caagcccggc acaacgggcc
     2161 gcgctccttg cacaagatta agcgctatct caccccccac cccagcaccg gacggcggcg
     2221 cgaatgacat acccatcgcc tcttcctcac gcgccggcag cagcaacgcc acccgcccag
     2281 cctgccgccg cgccttcacg gcagccgcct gttccttcgc ctgcattatg acggcacggt
     2341 aggacggcat ctcattgtct aatcgccgta tagcccggcc catgacatcg gtctgcggca
     2401 tcaaacgcac cgcctgtaca ga
//
LOCUS       DASQCV010000323         5060 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1563486, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000323 DASQCV010000000
VERSION     DASQCV010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5060
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1563486"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..230)
                     /locus_tag="VEQ16_04880"
     CDS             complement(<1..230)
                     /locus_tag="VEQ16_04880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63197.1"
                     /translation="MAQKLTRTRGKAKPPQATASADRLTAQLQALEAELPPAVLRVAH
                     FLNRNRVAVLANSAAELAAMIGTSDATVVRTV"
     gene            474..1073
                     /locus_tag="VEQ16_04885"
     CDS             474..1073
                     /locus_tag="VEQ16_04885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014106866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP63198.1"
                     /translation="MLLEIDALRGKPGGPFSLRLGAGDCVVISGPSGIGKSLLLRMIA
                     DLDENQGRVLLNGTSRDAMTAPQWRRQVMYVAAESGWWADHVHEHMQPIAEAKRLAPR
                     LGLAEALLHAPVAQLSTGERQRLGLIRAIIRAPLVLLLDEPSSALDEESTLRMEALLR
                     ELTEAGMGLILVTHNEAQARRLATRRYQMCAGRLEEMSA"
     gene            1084..1899
                     /gene="fetB"
                     /locus_tag="VEQ16_04890"
     CDS             1084..1899
                     /gene="fetB"
                     /locus_tag="VEQ16_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003619593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron export ABC transporter permease subunit
                     FetB"
                     /protein_id="HYP63199.1"
                     /translation="MTNVSPPISLSAADLAIGASLVLFSACLSLALSLRLHRALLWAA
                     ARMVAQLLLVGFVLRIVFELSNPWVTLLAALLMAAAASFEAGARQEHKLPAPWHYITG
                     GSATMFATLIITVLALVTALRPHPWYNAREALPLTGIILGNVMNAVSLALNSFFTTAH
                     RERAAIEARLALGESRYLALHNIAAHSIRTALIPTINVMSAAGLITMPGIMTGQLLAG
                     MDPVAAAKYQILLMFLIVGGNCLGSFAAVHVAIHRLVDRRDRLRLDRLRNRLG"
     gene            2024..4417
                     /locus_tag="VEQ16_04895"
     CDS             2024..4417
                     /locus_tag="VEQ16_04895"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYP63200.1"
                     /translation="MRGFWDVRLRAALRGFSSARCITIGLGSALAVAPAALAQTANAP
                     VNLDLGSVLSTGSGGNSPANLINTPGTAPYESPSTAPLHASQPTSVVSKHTIDNMLIG
                     TQSWADIARLTPSVNVINPNGPGLMEATGPTVRGFQNGQYNVTYDGIPIGDSNDFTQH
                     STSFFTNSEIGEMVIDRGPGDASTVGDATFGGTMSIRTVNPAPTTTATLNSSYGSYNT
                     SDNGIRLDSGAIQAANGTTALFNVEHIQSDGALQNANQERTNFFGKVVIPVNNSTTIT
                     LLALYNQLYQNPPLGATDAQMSAFGWNYAYSSDPNSQAFYRLNYDRITTDMEYADIQS
                     NLGDGFLYDGKIYTYAYYHHDVNGDDPNASGAIPNEVVLTPGGPAIPGIPGQLFKNDY
                     RSVGTIQRLQKNFDWGDIKTGFWFDHQVNTRFVQNVALSNGNAINYDPNDSNGCQGTV
                     GNNCTEQLPGFNNGLGSIERLQHNQLYTFQPYGQVDWQPIDGLTVTAGLKWAYFRRAL
                     DATVQQKTELITGYTHNWQKVLPSFDVTYAFTPNVSAYFQAAEGFLAPNLNTFYTQAI
                     SAQSLRPESTINFQSGVTYHDEHWMLSGDLYTIHFENFINHKNESINVNGSTIKAPVF
                     FNSGGVIYRGVEAEAAYSFGNGVTLFGNAGYNEAFQTSVGTHIVGAPQGTANFGAIYN
                     ANGYYASIIDQWTGGQYSGNTGNGNEANSPAVGDSPGGWYDPYNVVNVALGYTFNHDN
                     PAKTPISVKVNLDNITNQKKIIFDNGTDGNNNLLYFRLTGFSAFGSVSIPIGFGTAL"
     gene            4549..>5060
                     /locus_tag="VEQ16_04900"
     CDS             4549..>5060
                     /locus_tag="VEQ16_04900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HYP63201.1"
                     /translation="MSISYIIFLANYSDGVLYILALLLLLALGVIIDRSWSLRSTILR
                     GRSIIRATADKASLGLAELQALQAEAGSLPEAALLDTALRHHGHTGDTMANRLDEAIM
                     LIAPSLDRRLWILDTVVTLAPLLGLFGTIIGMFHAFNVLAQPGHAPAEVTGGVADALV
                     ATAFGIFIAML"
BASE COUNT          971 a         1627 c         1453 g         1009 t
ORIGIN      
        1 tgcacggtgc gcacgaccgt cgcgtcggag gtgccgatca tggcggcgag ttcggccgcg
       61 gaattggcca gtacggcgac gcggttgcgg ttgagaaaat gcgccacgcg cagcaccgcc
      121 ggcggcaatt ccgcttccag cgcctgcaat tgcgccgtca acctgtcggc cgatgcggtg
      181 gcctggggcg gtttcgcctt gccgcgcgtt ctggtcagtt tctgggccaa ttccgttttc
      241 ctggctgcgt cataaaactg tcaatcctgt agcgattgcg ctggatgggc aattctttgt
      301 aatggctgct acacaagcga tgctcctatg tccagcccat tatccagtcc atattcacgc
      361 cgcaaggcgc tgcccggctg ccgttctgtt ccaaaaatat ctgtgctccg caagatgttt
      421 gttgtttcag acattgccgg attatgccgc ggcgcaggcg ggcggggctg accatgctgc
      481 ttgagattga tgcgctgcgc ggcaagccgg gcgggccgtt cagcctgcgg ctgggggctg
      541 gggattgtgt ggtcatttct ggcccgtccg gcatcggcaa gagcctgctg ctgcgtatga
      601 tcgccgatct cgacgagaac cagggcaggg tgttgctgaa tggcacatcg cgcgatgcca
      661 tgacagcgcc gcaatggcgc cgccaggtga tgtatgtggc ggcggaatcc ggctggtggg
      721 cggaccatgt gcatgagcat atgcagccca ttgccgaagc caagcgcttg gcaccgcgcc
      781 tggggctggc cgaggcgctg ctccatgccc ctgtagcgca actttccacc ggcgagcggc
      841 aaaggctggg actgatccgc gccatcatcc gcgcccccct tgtgctgcta ctggatgaac
      901 cgagttcggc gctcgacgaa gagtccaccc tgcgcatgga ggcgctgctg cgcgagctga
      961 cagaagcagg catggggctg attctggtca ctcataacga ggcgcaggcc aggcgcctgg
     1021 cgacgcgccg ctaccagatg tgcgccggcc ggctggaaga gatgagcgca tgaagaatat
     1081 caaatgacga atgtcagccc ccccatcagc ctgagcgccg cggacctcgc catcggcgcg
     1141 tcgctggtgc tgttcagcgc ctgcctctct ctggcgctgt cgctgcggct gcaccgcgct
     1201 ctgctatggg ccgcggcacg catggtcgcg cagcttctgc tggtcggatt cgtcctgaga
     1261 attgtctttg aactttcaaa tccatgggtc acgctcctgg ccgctttgct gatggccgct
     1321 gccgccagtt tcgaggccgg cgcgcgccag gagcataagc tgccggcacc ctggcattat
     1381 ataacgggcg gaagcgctac catgttcgcc acccttatca tcaccgtgct ggcgctcgtc
     1441 accgcgctgc gcccgcatcc ctggtataat gcgcgcgagg cgctaccgct caccggcatc
     1501 atcctcggca atgtgatgaa tgcggtgagc ctcgccctca acagcttctt caccaccgcg
     1561 catcgcgagc gcgccgccat cgaggcgcgg ctggcgctgg gggagagccg ctatctcgcc
     1621 ctgcataaca tcgccgccca ttccatccgc accgcgctca tccccaccat caatgtcatg
     1681 agcgccgccg gcctcatcac catgcccggc atcatgaccg gccagctgct cgccggcatg
     1741 gacccggtgg cggccgcgaa gtaccagata ttgttgatgt ttctgattgt tggcgggaat
     1801 tgcctgggca gtttcgcggc cgtccatgtt gccattcacc gccttgtcga ccgccgcgac
     1861 cggctgcgcc tcgaccggct gcgtaaccgg ttgggctaaa cccaccgccg tcatcgaagt
     1921 gcaacaaaac aatcacgaag tagtaaaaac atctgaaaaa attttttggt agtgactact
     1981 acatacaccg actacaatcc agacaaatca aaggaaggtt gtcatgagag gtttctggga
     2041 cgtgcgcctg cgcgcggcgc tgcgtggttt ttcttcggcg cgttgcatca ccatcgggct
     2101 tgggagcgcg ctggccgttg ctccggctgc gctggcacag accgccaacg cgccggtcaa
     2161 tcttgatctc ggctccgtgc tgtccaccgg cagcggcggc aacagccccg ccaatcttat
     2221 caacacaccc ggcacggcgc cttatgaatc gccctcgacc gcgccactgc atgcctcgca
     2281 gccgacctcg gtcgtctcga agcacacgat cgacaatatg ctcatcggca cacagagctg
     2341 ggcggatatc gcccgcctca ccccgtcggt gaacgtgatc aaccccaacg gccccggcct
     2401 gatggaggcc accggcccca ccgtccgcgg cttccagaac ggccagtaca acgtcaccta
     2461 tgatggcatc cccatcggcg actccaacga tttcacccag cattccacgt cgtttttcac
     2521 caattcggaa atcggtgaga tggtcatcga ccgcggtccg ggcgatgcga gcacggtcgg
     2581 cgatgccacc ttcggcggca cgatgtccat ccgcacggtg aatccggcgc cgacgacaac
     2641 ggcgacgctg aacagctcct atggcagcta caacacctcc gataacggca tccggctcga
     2701 tagcggtgcc atccaggccg caaacggcac cacggccctg ttcaatgtcg agcatatcca
     2761 gagcgatggc gccctgcaga atgcgaacca ggagcgcacc aatttcttcg gcaaggtggt
     2821 gatcccggtc aataacagca cgaccatcac gctgctggcg ctctacaacc agctttacca
     2881 aaacccgccg ctgggtgcca cggatgcgca gatgtcggcc tttggctgga attacgccta
     2941 cagctccgac ccgaattcgc aggccttcta ccgcctcaat tacgaccgta tcaccaccga
     3001 tatggaatat gccgacatcc agtccaatct cggcgacggc ttcctctatg acggcaagat
     3061 ctatacctac gcttattacc atcacgatgt gaacggtgat gaccccaacg cgtccggcgc
     3121 cattcccaac gaggtggtgc tgaccccggg tggtcccgcg atacccggca tccccggcca
     3181 gctcttcaag aatgattacc gctcggtcgg cacgatccag cgcctgcaga agaatttcga
     3241 ctggggcgac atcaagaccg gcttctggtt cgaccaccag gtcaatacgc gcttcgtgca
     3301 gaatgtggcg ctgagcaacg gcaacgcgat caattacgac ccgaatgaca gtaacgggtg
     3361 ccagggcacg gtcggcaata actgcaccga gcagctgccg ggttttaata acggactcgg
     3421 ctcgatcgaa cgcctgcagc ataaccagct ttatacattc cagccttacg gccaggttga
     3481 ttggcagccg atcgacgggc tgaccgttac ggctggcctg aaatgggcct atttccgccg
     3541 cgccctcgac gcgacggtgc agcagaagac cgaactgata acgggttata cccataactg
     3601 gcagaaagtg ctgccctcgt tcgatgtgac atatgccttc acgccgaatg tctcggccta
     3661 tttccaggcg gcggaaggct tcctcgcgcc gaacctcaac accttctaca cccaggccat
     3721 cagcgcgcag agtctgcggc cggagagcac gatcaatttc cagtccggcg tcacctatca
     3781 cgatgagcac tggatgctga gcggtgatct ctacaccatc catttcgaga attttatcaa
     3841 ccacaagaat gaaagcatca atgtcaacgg ctccacgatc aaggcgcctg tcttttttaa
     3901 cagtggcggc gtgatctatc gtggcgtcga ggctgaggcg gcctacagct tcggcaatgg
     3961 cgtcaccctg ttcggcaatg ccggttataa cgaggccttc cagacctcgg tcggtaccca
     4021 tatcgtcggg gcgccgcagg gcaccgccaa tttcggcgcg atctataatg ccaacggtta
     4081 ttacgcctcg atcatcgacc agtggaccgg cggccagtat agcggcaata ccggcaacgg
     4141 taacgaggcg aacagcccgg cggtgggtga ctcgcccggt ggctggtacg atccgtacaa
     4201 tgtcgtgaat gtcgcgctgg gctatacctt caaccatgac aatccggcca agacgccgat
     4261 ttcggtgaag gtcaatctcg acaatatcac caaccagaag aagatcattt tcgacaatgg
     4321 caccgacggc aataacaatc tgctttactt ccgcctgacc ggcttctccg ccttcggttc
     4381 ggtcagcatc cccatcggct tcggcaccgc gctgtgatgc gggccggctg acaacaaaag
     4441 actgcaaggg gccggccccg tgccggcccc ggatttttgc cgacatcaat ctgtcacact
     4501 acagaattgt gacttgctgt atcggcaatg cgtttgagga gtgtgaacgt gtccatcagc
     4561 tatatcatct ttctcgccaa ttattcggac ggggtgctct acatcctggc gctgctgctt
     4621 ttgctggcac tgggtgtcat catcgaccgt tcctggtcgc tccgcagcac catcttgcgc
     4681 ggccgctcca tcattcgtgc cacggcggac aaagccagcc tggggcttgc ggagttgcag
     4741 gcgctgcagg ccgaggcggg cagcctgccc gaggccgctt tgttggacac ggcactgcgc
     4801 catcacggcc atacgggcga caccatggcc aaccggctgg atgaggcgat catgctgatc
     4861 gcgccgagcc ttgaccgccg cttatggatt ctggacacgg tggttacact cgcgccgctg
     4921 ctcggtctgt tcggcaccat catcggcatg ttccacgcct tcaacgtgct tgcccagcca
     4981 ggccatgcgc ctgcggaagt cacgggcggc gtcgccgatg cgctggttgc caccgccttt
     5041 ggcattttca ttgccatgct
//
LOCUS       DASQCV010000324         3293 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1066346, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000324 DASQCV010000000
VERSION     DASQCV010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3293
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1066346"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /locus_tag="VEQ16_04905"
     CDS             complement(<1..534)
                     /locus_tag="VEQ16_04905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HYP63202.1"
                     /translation="MPVSDLLLPAERERILAKAAHFSPPDYVLPDGRRDLVGLSREEL
                     AAEMEAFGEKPFRAKQLWHWIYHQGVRDFAAMSNIAKPLQEKLATSFIIGRPDVASDQ
                     LSKDETRKFLFKFRDNEAVETVYIPDRQEDRGAVCLSSQVGCTLSCRFCHTGTQRLAR
                     NLSAAEIVGQFMAARDAY"
     gene            complement(525..1028)
                     /locus_tag="VEQ16_04910"
     CDS             complement(525..1028)
                     /locus_tag="VEQ16_04910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63203.1"
                     /translation="MKTLTAAMAAITILTPLAAQAAGPVPLGPNKGHYGEWIAASYGT
                     GADKICYAFTKAIRTRPHISSRGIPMLTVTERHGSRDEISLTPGYKYPKNPVITLQAG
                     KTKIPFDVQDNVGFTDNVSPALAAFTGESTATATSSGPKGAKTVTDTYSLNGFSAAYK
                     AIVKACP"
     gene            1081..1767
                     /locus_tag="VEQ16_04915"
     CDS             1081..1767
                     /locus_tag="VEQ16_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019462792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HYP63204.1"
                     /translation="MDAYVVAPPPQITVPVEGGGVFPVRRVYCVGRNYAAHAREMGGD
                     PNREPPFFFSKPADALVTSGADTPFPPATESLHHEIELVLAIGQGGADIAPEQALAHI
                     FGYGVGLDLTRRDMQERAKAARQPWDMSKGFDGSGPVGTISPAAVVGHPSAGRISLEV
                     NGQVCQAGELSDMIWQVPEIVAALSRLVRLAPGDLIFTGTPDGVGPLTRGDVLRGEVE
                     GIGMVETRIV"
     gene            complement(1775..3040)
                     /locus_tag="VEQ16_04920"
     CDS             complement(1775..3040)
                     /locus_tag="VEQ16_04920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HYP63205.1"
                     /translation="MSENMPDPDAALRAGLRRHQLFASGLLALMAALAVAGYALPFSP
                     SVSLLRDAAKAGFIGGVADWFAVTALFRHPLGLPIPHTAILPAQKERLGAALGRFVAN
                     HVFTEADIRKLLGNLDSPALLRRFLSDSSATHPLAEALAGMLPRLLASIEDGRARRLL
                     ARLLPRLIGGRAAGVVVARALAGLVAGGRHQEVFSFILAQLKETLAAREEVLTAAIKE
                     RVSQHGGKLVGWAVGASIAKRVLAAVNQELEHVSPDSSEMREAFDEWVHHEIDRLETD
                     PERATELGRALQGVLAHDTVKAWAWDVWARMRRALELDATNPHGRSVAVIEGALASLA
                     ENLEQDPAAKARVNRAMEALVLRALPAAQAEGAEFIGRVVGAWDAATITEKLELRVGK
                     DLQYIRVNGTLVGFFLGAAINLLFLAAGR"
     gene            complement(3100..>3293)
                     /locus_tag="VEQ16_04925"
     CDS             complement(3100..>3293)
                     /locus_tag="VEQ16_04925"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HYP63206.1"
                     /translation="LDSTALDALAECDATLQKSGCRLLLARVKDQVHALLTQTAPELA
                     DKSRCFRSVVDAYNAAARE"
BASE COUNT          548 a          959 c         1201 g          585 t
ORIGIN      
        1 ataggcgtcg cgcgcggcca tgaactggcc gacgatttcc gccgccgaga ggttgcgcgc
       61 gaggcgctgc gtgccggtat ggcagaagcg gcaggagagg gtgcagccga cctgggaaga
      121 gaggcagaca gcgccgcgat cttcttgccg gtcggggata tagaccgtct ccaccgcttc
      181 gttgtcgcgg aatttgaaga ggaatttgcg cgtctcgtct ttcgagagct ggtccgaggc
      241 gacatcgggc cggccgatga tgaagcttgt ggcgagtttc tcctgcagcg gcttggcgat
      301 gttgctcatg gcggcaaaat cgcgcacgcc ctgatggtag atccagtgcc agagctgttt
      361 ggcccggaag ggtttttcgc cgaaggcttc catctctgcc gccagttctt cgcgggagag
      421 gccgaccaga tcgcgccgcc cgtcgggcag cacgtagtcg ggcggggaga aatgcgcggc
      481 tttcgcgaga atgcgctcgc gttcggctgg aagaagcagg tcgctcacgg gcaggctttc
      541 acaatggcct tgtaggcggc ggaaaaaccg ttcagcgaat aggtgtcggt gacggtttta
      601 gcacctttcg ggccggagga ggtggcggtg gcggtgcttt cgccggtgaa ggcggcgagg
      661 gccgggctca cattgtcggt gaagcccaca ttgtcctgca catcgaaggg gattttggtt
      721 ttgcccgctt gcagggtgat gaccgggttt ttggggtatt tatagccggg ggtgagggaa
      781 atctcgtcgc gcgagccgtg gcgctcagtg acggtgagca tgggtatgcc gcggctggaa
      841 atgtgcgggc gggtgcggat ggccttggtg aaggcgtagc aaatcttgtc ggcgccggtg
      901 ccgtagctgg cagcaatcca ctcgccataa tgacccttat tggggccgag cggcacgggg
      961 ccagcggctt gcgccgcgag cggggtcagg attgtaattg cggccatcgc ggcagtgagg
     1021 gttttcatgg gagaagcata accgatgcac tgcccgcatc caagttaagg gagcattgtc
     1081 atggacgctt acgttgtcgc gccgccgccg cagataaccg tgcccgtcga gggcgggggc
     1141 gtgtttccgg tccggcgtgt ttattgcgtg gggcgtaatt atgctgcgca tgcgcgggaa
     1201 atgggcggtg acccgaatcg cgagccgccg tttttcttca gcaagccggc cgatgcgctg
     1261 gtgacaagcg gggcggacac gccgtttccg ccggcgacgg agagcttgca tcacgagatc
     1321 gagctggtgc tggcaattgg ccagggcggg gcggatatcg cgccggaaca ggcgctggcg
     1381 catattttcg gctatggggt ggggctggat ttgacgcggc gcgacatgca ggagcgggcc
     1441 aaggcggcgc gtcagccctg ggacatgtcg aaggggtttg atggctccgg cccggtgggg
     1501 acgatttccc cggctgcggt tgtggggcat ccctcggcgg gccgcatcag cctggaagtg
     1561 aacgggcagg tgtgtcaggc tggcgaattg agcgacatga tctggcaggt gccggagatt
     1621 gtcgcagcac tttcgcgcct ggtgcggctg gcgccgggtg atctcatttt tacaggcacg
     1681 ccggacggtg ttggcccgct cacgcgcggc gatgtgctgc gcggcgaggt cgagggcatc
     1741 ggcatggttg aaacgcggat cgtctgatcc cgttttacct tccagccgcc aggaatagaa
     1801 gattgatggc ggcaccgagg aaaaacccga ccagcgtgcc attgacgcgg atatattgca
     1861 ggtccttgcc gacgcgcagc tccagttttt ccgtgatggt ggcggcgtcc catgctccca
     1921 ccacgcggcc gatgaattcc gcgccctcgg cctgggcggc gggcagagcg cgcagcacca
     1981 gcgcctccat ggcgcggttg acgcgggctt tcgccgccgg gtcctgttcc aggttctcgg
     2041 ccaggctggc caaagcgccc tcgatgacag cgacagagcg gccatgcggg ttggtggcat
     2101 ccagttccaa agcgcggcgc atcctggccc agacatccca ggcccaggcc ttcaccgtgt
     2161 catgcgccag cacgccctgc aaagcgcggc ccagctcggt ggcgcgctcc gggtcggtct
     2221 ccagccggtc gatttcgtga tgcacccatt catcgaaggc ttcgcgcatc tcggagctgt
     2281 ccggactgac atgctccagc tcctgattca ccgccgccaa aacacgtttt gcaatggagg
     2341 cgccgacggc ccagccgacc agcttgccgc catgctggga gacgcgctcc ttgatggcgg
     2401 cggtaagcac ctcttcccgt gccgcgagcg tctccttgag ctgggccagg atgaaggaga
     2461 atacctcctg gtgccgcccg cccgccacta gcccggcgag ggcgcgcgcc accaccacgc
     2521 ccgcggcgcg tccgccaatg agccgcggca gcagccgcgc cagcaggcgg cgggcgcggc
     2581 catcctcgat gctggcgagc aggcgcggca gcatccctgc cagcgcttcg gccagcgggt
     2641 gggtggcgct gctgtcagag agaaagcggc gcagcagcgc cgggctgtcg agattgccga
     2701 gcagcttgcg gatatcggcc tcggtgaaga cgtgattggc gacaaaccgg cccaaagcgg
     2761 cgccgaggcg ctccttctgt gcgggcagaa tggcggtgtg cgggatgggc aggccgagcg
     2821 gatggcggaa caaggccgtg accgcgaacc agtccgccac cccgccgatg aagccggcct
     2881 tggcggcatc acgtagcaag gatacggacg gcgagaaggg cagcgcatag ccagcaacgg
     2941 caagagccgc catgagggcc agcaggccgg aggcaaaaag ctggtgtcgt cgcaagccgg
     3001 cccgcaaggc ggcatccggg tccggcatat tctcgctcat ggcgcgagac tatgcggacg
     3061 agcgcagggg gcgcaagcag ggggcttggt ttccctgcct cactctctag ccgccgcgtt
     3121 gtaggcgtcc acgaccgagc ggaagcagcg cgatttgtcg gcgagttcgg gggcggtttg
     3181 ggtgagcaaa gcgtggacct ggtctttcac tcgggccagc agcaggcggc agccggattt
     3241 ttgcagggtg gcatcgcatt cggccagggc gtcgagggcg gtggagtcga gat
//
LOCUS       DASQCV010000325         1994 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_401984, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000325 DASQCV010000000
VERSION     DASQCV010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401984"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..>1994
                     /locus_tag="VEQ16_04930"
     CDS             67..>1994
                     /locus_tag="VEQ16_04930"
                     /inference="COORDINATES: protein motif:HMM:TIGR01733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYP63207.1"
                     /translation="MPKGVVVAHGNIVASNDARSSFYPQLSQQRFLLLSSIAFDSSIA
                     GVFGSILNGGTLVLTAELTADSAISSIIRHQVNCFLTVPALCGVLIDHLRQTSRIPLE
                     AVILAGEACSSELAILHRQSFPAVSLINEYGPTECSVWSTAHRCSELDSFRAFVAIGR
                     PIWNTRIYVLDAGLQPVPAGVAGELYIAGAGLARGYLHRAGLTAERFVADPHGAAGSR
                     MYRTGDLARWRADGVLDFLGRADDQIKLRGFRIEPGEIEAALVRHEGVAQAAVVARGD
                     GEGERGEPRLVAYVVACDGAWLEASQLRAHLSARLPDYMVPWDYVVLERLPLTPNGKL
                     DRRALPAPAGRRAAGHGRLPRTPQEEILCGLFAQLLGVERVGIEENFFALGGDSIVSM
                     QLVSRARKAGLLITPRDVFVYQTVEALAAAATPVDQASSVITDIAVGALPLTPIMHWL
                     IERGGPIEGFNQAMLLQVPVGLQEHDLAGALQAVLDHHDALRLRLITPAEGSGFSLEV
                     APCGAIAAQACLRRVDIAGLGEEARRWRIEAEAQAAQRRLAPSYGVMLQALWFDAGAQ
                     AAGRLLLMIHHLAVDGVSWRILLPDLAAAWQAAMRGQAPVLAARGTSFRRWAQRLVDE
                     AQTDKRAGELSFWRAQQSG"
BASE COUNT          320 a          530 c          716 g          428 t
ORIGIN      
        1 gctcccgccc ccgccctcga tccgcgacat cccgcctaca tcatctacac ttcaggctcc
       61 acaggaatgc caaagggcgt cgtggtcgcg catgggaaca tcgtagcgtc gaatgatgcg
      121 cgatcttcat tctatccgca attgtcacag cagcgattcc tgctgctgtc atcgattgca
      181 tttgatagtt caattgctgg agtatttggc agcattttaa atggcggcac attggttctg
      241 actgctgaat tgactgcaga ttcagcgatc tcatcaataa tacgacatca ggtgaactgc
      301 tttcttactg tgccggcgct gtgcggcgtg ctgatagacc atcttaggca aacgtcgcgg
      361 attccattag aagcggtgat tctagcggga gaggcgtgct catcggaatt ggcaatccta
      421 catcggcagt catttccggc tgtttcgctc ataaacgaat acggcccaac ggagtgtagt
      481 gtttggtcta ccgcccatcg ctgtagtgag ctcgattctt ttcgagcgtt tgtcgcgatc
      541 ggtcggccga tttggaatac gcggatttat gtgttggacg caggcttgca gccggtccca
      601 gcgggggtgg ctggggaact ttacattgcg ggcgcgggac tggcgcgggg gtatctgcat
      661 cgagcggggc tcacggcgga gcggtttgtc gcggacccgc atggcgctgc cgggagccgg
      721 atgtaccgca ccggggacct ggcgcgctgg cgcgcggacg gggtgttgga cttcctcgga
      781 cgcgcggacg atcagatcaa gctgcggggg tttcgcattg agcctggcga gatcgaggca
      841 gcgctggtgc ggcatgaggg ggttgcgcag gcggcggttg tggcgcgcgg ggatggggaa
      901 ggtgagcggg gcgagccgcg gcttgtggcc tatgtggttg cctgcgatgg cgcttggctc
      961 gaagcatcgc agttgcgcgc gcatctgtct gcgcggctac cggactacat ggtgccgtgg
     1021 gactatgtgg tgctggagcg gctgccgctc acgcccaatg gcaagcttga ccgccgtgcg
     1081 ctgcctgcgc cggcggggcg gcgggcagca gggcatggtc gtttgccgcg cacgccgcag
     1141 gaggagatcc tgtgcggcct gtttgcgcag ctgctggggg ttgagcgggt cgggattgag
     1201 gagaatttct ttgcgctcgg gggcgacagc atcgtctcga tgcagttggt aagccgcgcg
     1261 cgcaaagcag gactgctgat tacgccgcgc gacgtctttg tgtatcagac ggttgaggca
     1321 cttgctgcgg cggctacgcc ggtagatcag gcatcgtccg tcataacgga tattgcggtc
     1381 ggcgctttgc cgcttacgcc gatcatgcat tggctcatcg agcgtggcgg gccgattgag
     1441 ggcttcaacc aggccatgct tttgcaggtc ccggtgggcc tgcaggaaca tgatctggct
     1501 ggcgcattgc aagcggtgct tgatcatcac gacgcattac ggctgcggct gataacgcct
     1561 gccgaaggga gcggattctc acttgaggtg gcgccgtgcg gagccattgc ggcgcaagct
     1621 tgcctgcgcc gggtcgatat tgctgggctt ggggaggagg cgaggcgctg gcggattgaa
     1681 gcggaagcgc aagctgcgca gaggcggctt gcgccgtctt acggggtgat gctgcaagcg
     1741 ctgtggttcg acgccggtgc gcaggcggcc gggcgactgt tgctgatgat ccatcatctt
     1801 gcggttgatg gagtatcgtg gcgcatcctg cttcccgatc ttgctgcggc gtggcaagcg
     1861 gccatgcgcg gacaagcacc tgtgctggcg gcgcgaggca cgtcgtttcg gcgctgggcg
     1921 cagcggcttg tggatgaggc gcagacggac aagcgcgcgg gggagctttc gttctggcgc
     1981 gcgcagcaaa gcgg
//
LOCUS       DASQCV010000326         5118 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3057282, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000326 DASQCV010000000
VERSION     DASQCV010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5118
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3057282"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(9..1370)
                     /locus_tag="VEQ16_04935"
     CDS             complement(9..1370)
                     /locus_tag="VEQ16_04935"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYP63208.1"
                     /translation="MRLTGFFVLAGMMLAAIAWARGPEYDEAYSIFLTAGHARPAWPQ
                     GVFTAGSVRWLYAGHAGFGQIAHDLRTGDVHPPLYFWLLEVWRRVFGPSWFAARLLSV
                     FCSLAGLWLLALLAEAVEVPVYPALFLTLFSYGFAYTGIVARGFALAQSCNIAGVLLA
                     VLAVRERRFGWAFGAGIALGAACFSNYLALFTGAAALAWLALQAPRLLPVALAGFLPF
                     MPLCAWFFLAQRGARVGQFVAFSSAHAMTLLAKDSGAVMFGGLPLYAGRFALPVAVTL
                     GTLFVVCLIFVWRRRHASAPFFAALALATPCGLFALGVVFGNTPIEIRYLAFATPFLA
                     LLLAPALPRMLLGLLLATQAASIAGLALAPSTTQPQAAAARAAAAYPGVPVMLPFGND
                     GVGIPGPFIASAPDDMRILLVRPGDIPKGQAVFVTLPIDNASRAVAAETGCPSGVAWC
                     RPR"
     gene            complement(1407..1835)
                     /locus_tag="VEQ16_04940"
     CDS             complement(1407..1835)
                     /locus_tag="VEQ16_04940"
                     /inference="COORDINATES: protein motif:HMM:NF016701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HYP63209.1"
                     /translation="MSDMIKGGCLCGAVRYESAAEPLMSRMCYCRVCQYFACGNAAVN
                     VLFPSAAVSFTGTRKDYVSIADSGTEMHRTFCPECGVHITSAAASRPELVFIRVGTLD
                     DPSLAQPSAAIWTDSAPRWACIDPALEQVAKQPAPLKLST"
     gene            complement(1828..2781)
                     /locus_tag="VEQ16_04945"
     CDS             complement(1828..2781)
                     /locus_tag="VEQ16_04945"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0047952 - glycerol-3-phosphate
                     dehydrogenase [NAD(P)+] activity [Evidence IEA];
                     GO_process: GO:0006072 - glycerol-3-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HYP63210.1"
                     /translation="MNKDIAVIGAGAWGTALAILFANAGKKVTLWARDEAKAADMHAT
                     RQNPRLPGAQLPEHLTVTHKIPDADILLLAVPMQHLRALLPALPPGPPLLLCCKGLER
                     GTLLLPPEIVAERPAAMLTGPNFAHEIAAGLPAAAVLAMPDAAMRAELMMELHTSTLR
                     LYGSADALGAALGGAAKNVIAIAAGAVIGAGLGENARAALITRGLAEIARLSAALGGK
                     PETISGLSGLGDLLLTCTGPSSRNFSLGHALGQGRTLEDILSARTSVTEGVATAPALL
                     ARAEAAGVEMPITGAVTELLAGRRTIPQTMAALMGRALKDE"
     gene            complement(2774..3583)
                     /gene="rlmJ"
                     /locus_tag="VEQ16_04950"
     CDS             complement(2774..3583)
                     /gene="rlmJ"
                     /locus_tag="VEQ16_04950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HYP63211.1"
                     /translation="MNYRHIYHAGNFADVMKHALLIPLIRLMQRKDKPFLLLDTHAGI
                     GSYDVLSEQAEKTGEWRDGIGRIFDNPPEALADYVALVRELGLYPGSPAIAAHLLRPA
                     DRLMACELHPEDAATLRRNMRGTNAAVHERDGYEALNAFLPPPEKRALILIDPPFERT
                     DEFATLAATLTAAWKKFPSGVFVVWYPIKHRAPVRAFFESLKHSPIRDVIALEFLRRP
                     DTNPNALNGCGLLVINPPFGLEAEAAPILAACAAALGEPGCGAWVERLIDE"
     gene            complement(3580..4671)
                     /gene="tsaD"
                     /locus_tag="VEQ16_04955"
     CDS             complement(3580..4671)
                     /gene="tsaD"
                     /locus_tag="VEQ16_04955"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HYP63212.1"
                     /translation="MDSDGRAAAPPAPRAPILGIESSCDETAAAILAPDGTILAERVL
                     SQIEDHAAFGGVVPEIAARAHLAALDAMVKDALREAGLDFAGLAAIAATAGPGLIGGL
                     LVGTGYAKGAAIAAGLPYIAINHLEAHALTARLPGLAPEQPAFPYLLLLLSGGHSQCV
                     AVEEVGRYRLLGSTLDDAVGEAFDKSAKLLGLPYPGGPALEALAREGTPEIALPRPLL
                     RREGCDFSFSGLKTAIAQLVAEEPPGPIARARAADIAASFQAAVTDILGDRLTHALAM
                     CPDATAIVAAGGVAANKAIRARLTEVAATAQKPLIAPPLRLCTDNAVMVAWAGLERLR
                     AGATSTLSAPCKPRWPLEALEEALGKVPA"
     gene            4710..>5118
                     /locus_tag="VEQ16_04960"
     CDS             4710..>5118
                     /locus_tag="VEQ16_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012225791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HYP63213.1"
                     /translation="MKTVTPPHSRGLPLKVGTRGSPLARQQTATFLSLLRQACPVLGR
                     SEVFDEHIITTTGDKVQNRALAEIGGKGLFAKEIHEALAEGRIDFAVHSLKDLETTLP
                     DGIALACTLKREDARDVLVLPPGAAADAADPLAS"
BASE COUNT         1004 a         1680 c         1717 g          717 t
ORIGIN      
        1 gctaggcctt aacggggtct gcaccacgcc acacccgatg ggcagcccgt ctcggcggca
       61 acggcgcggc tggcattgtc gatcggcaga gtcacaaaca cggcctgccc ttttggaata
      121 tcgcctggac ggaccagcaa aatccgcatg tcatcgggcg ctgaagcaat aaacggcccc
      181 ggaatcccaa ccccatcatt gccaaatggc aacataaccg gcaccccagg ataagcagcc
      241 gccgcgcgcg ccgccgctgc ttgcggctgc gtggtggatg gcgccagagc cagcccggca
      301 atggacgccg cctgcgtggc cagcagcaac cccagcagca tacgcggcag cgccggggcc
      361 agcagcaggg cgaggaacgg tgttgcgaag gcgagataac gtatctcgat gggcgtgttg
      421 ccgaacacaa cgcccagcgc gaacaagccg cagggcgtgg ccaaagcgag cgctgcgaag
      481 aacggcgcgg aggcgtgacg gcggcgccag acaaaaatca agcatacgac aaataaagta
      541 ccaagcgtca cggcgacagg cagcgcgaaa cgccccgcat aaagcggcag gccgccgaac
      601 atcacggcac cggaatcctt ggccaggagc gtcatggcgt gggctgatga aaacgcaacg
      661 aattggccca cgcgcgcacc ccgctgggcg agaaagaacc acgcgcaaag cggcatgaag
      721 ggcaaaaacc ccgccaaagc cacgggcaaa agacgcgggg cctgcaaagc cagccacgcc
      781 agggcggcgg cgccagtgaa cagcgccaga taattgctga aacaggcggc gccgagcgca
      841 atgcccgcac cgaacgccca tccaaagcgc cgctcgcgca cggcgagcac cgccagcagc
      901 accccggcaa tgttgcaact ctgcgccagg gcaaagccgc gcgcgacaat gcccgtatag
      961 gcaaagccat aggaaaacag cgtcaaaaat agcgccggat aaaccggaac ctccaccgcc
     1021 tccgccagca gcgccagaag ccacagccca gccagcgagc aaaacacgga taaaagccgt
     1081 gccgcgaacc aggacgggcc aaaaacccgg cgccagactt ccagcagcca gaaatagagc
     1141 ggcggatgca catcgcccgt gcgcagatca tgcgcgatct gcccaaaccc ggcgtggccc
     1201 gcatagagcc atctcaccga cccggcggta aaaacccctt gcggccaggc tgggcgggca
     1261 tggccggcgg tgaggaagat ggaataggcc tcgtcatatt ccggcccgcg cgcccaggcg
     1321 atggcggcaa gcatcattcc cgccagcacg aaaaacccgg tcagcctcat gccgccatgt
     1381 taatgaacgc ggcaggtttt gcaacctcag gtggataatt tcaacggcgc cggctgtttc
     1441 gccacctgct ccagcgccgg gtcgatgcac gcccagcgcg gggcgctgtc cgtccagatg
     1501 gcggcggagg gttgcgccag gctggggtcg tccagggtgc cgacgcggat gaaaaccagc
     1561 tccggcctgc tggccgcggc ggaggtgatg tgcacgccgc attcggggca gaaggtgcgg
     1621 tgcatctccg tgccactatc ggcgatggag acataatcct tgcgtgtgcc ggtgaaactc
     1681 acggcagctg acggaaacag cacgttcacc gccgcattgc cgcaggcaaa atactggcag
     1741 acgcggcaat agcacatacg cgacatcagc ggttcggcgg cgctctcata acgcacggca
     1801 ccgcacaggc agccaccttt aatcatgtca ctcatccttc aacgcccggc ccatgagggc
     1861 ggccatggtt tgcgggatcg ttctgcgccc ggcgagcaat tctgtcaccg ccccggtgat
     1921 gggcatctcc acccccgccg cctcggcgcg ggcgagcaga gccggggcgg tggcgacacc
     1981 ttcggtgacg ctggtgcggg cggacaggat gtcttccagc gtccgcccct gccccagcgc
     2041 atggccgagc gaaaaattgc ggctgctggg gccggtgcag gtgagcagca aatcccccag
     2101 gccggacagg ccggaaatgg tttccggctt gccgccaagt gcggcggaaa gccgggcgat
     2161 ttccgcgagg ccgcgcgtga tgagggcggc gcgggcattc tcgcccagcc ccgcgccgat
     2221 gaccgccccc gcggcaatgg cgatgacatt cttggcggca cccccaagtg ccgcgcccag
     2281 agcatcggca ctgccataga ggcgcagcgt gctggtatgc agctccatca tcagctccgc
     2341 gcgcatggcg gcatccggca tggccaggac ggcggcggcg ggcaggccgg cagcaatctc
     2401 gtgggcgaaa ttgggcccgg tgagcatggc ggcgggacgt tccgcaacga tttccggcgg
     2461 cagcagcagc gtgccgcgct ccagcccctt gcagcaaagc aacaaaggcg ggccaggcgg
     2521 caaagcgggc agcagggcgc gcagatgctg catcggcacg gccaggagca aaatatccgc
     2581 gtccggaatc ttgtgcgtga cggtgagatg ctccggcaat tgggcgccgg gcagacgggg
     2641 attttggcgc gtggcatgca tgtccgccgc cttggcctca tcacgcgccc acagcgtgac
     2701 cttcttgccg gcattggcga acaggatggc gagcgccgtg ccccaggccc cggcgccgat
     2761 gacggcgatg tccttattca tcaatcagcc tctccaccca agcgccgcac cctggctcgc
     2821 caagggcggc cgcgcaagcg gcgaggatgg gggctgcttc cgcctccagc ccgaaaggcg
     2881 ggttgatgac gagcagcccg cagccattga gcgcgttggg gttggtatcc ggccggcgca
     2941 gaaattcgag ggcgatgaca tcgcggatgg gcgaatgttt gaggctttcg aaaaacgccc
     3001 gcaccggagc gcgatgtttt atcgggtacc agaccacgaa cacaccggag ggaaatttct
     3061 tccaggcggc ggtcagggtg gctgcaagtg tggcgaactc gtccgtccgt tcgaaaggcg
     3121 gatcgatgag gatcaaagcg cgtttttccg gcggggggag gaaggcgttc agcgcctcgt
     3181 agccgtcgcg ctcatgcacc gccgcattgg tgccacgcat attgcggcgg agggtggcgg
     3241 cgtcctcggg gtggagctca caggccatca gccggtcggc gggacgcagc agatgggcag
     3301 cgatggcggg tgagccggga taaaggccaa gctcgcgcac cagcgccaca taatccgcca
     3361 gggcctcggg cgggttgtca aaaatcctgc cgataccatc acgccattcg ccggtctttt
     3421 ccgcctgctc ggacagcacg tcatagcttc cgatgccggc atgagtgtcg aggagcagaa
     3481 acggcttatc cttccgctgc atcagccgga tgagcgggat gagcaaagcg tgcttcatca
     3541 catcggcaaa attaccggca tggtagatgt gacggtaatt cacgccggca ccttccctaa
     3601 tgcttcctct aacgcctcga ggggccagcg cggcttgcag ggggcggaca atgtgctggt
     3661 ggccccagcg cgcagccgct ccagtccggc ccaggcgacc atcacggcat tgtccgtgca
     3721 gaggcgcaga ggaggggcga tgagcggttt ttgcgccgtg gcggcaacct cggtgagacg
     3781 ggcgcgtatt gctttgttcg ccgccacgcc gccagcggcg acaatggcgg tggcgtccgg
     3841 gcacatggcc agggcatggg tgaggcggtc gccgagaata tccgtcaccg ctgcctggaa
     3901 gctggcggca atgtccgccg cgcgggcgcg ggcgatgggg ccgggcggct cctccgccac
     3961 gagctgggcg atggcggtct tcaacccgga gaaggagaaa tcgcacccct cgcggcgcag
     4021 cagggggcgg ggcagcgcaa tctccggcgt cccttcgcgg gccagcgcct ccaaggccgg
     4081 gccgccagga tagggcaggc cgagcaattt ggctgatttg tcaaaggctt cgcccaccgc
     4141 gtcatccaac gtggagccga gcagccggta gcgtcccacc tcctccaccg ccacgcattg
     4201 cgaatggccg ccggagagga ggaggagcaa ataggggaaa gcgggctgct ctggcgccag
     4261 gccgggcagg cgggccgtca gcgcatgagc ttccagatgg ttgatggcga tataaggcag
     4321 cccggcggca atggccgcgc ccttggcata gccggtgccc accagcagcc cgccaatcag
     4381 ccccggcccg gccgtggcgg cgatagcggc gagaccggca aaatccagcc cggcctcgcg
     4441 cagcgcgtcc ttcaccatgg cgtccaaggc ggcgagatgg gcgcgcgcgg caatttccgg
     4501 caccaccccg ccaaaggcgg cgtggtcctc gatctggctc agcacgcgct cggccaggat
     4561 cgtgccatcc ggtgccagaa tcgccgcggc ggtttcgtcg caggagctct caatgcccag
     4621 aatgggtgcg cgcggggctg gcggggcggc cgcgcgccca tcagagtcca catcttttct
     4681 ttccatgcgt cccgctctag accagctgag tgaaaaccgt aactcccccg catagccgcg
     4741 ggctgccgct gaaagtcggc acgcgcggct caccgcttgc ccgccagcag accgcgacct
     4801 tcctttcgct cctgcgccag gcctgccccg tcctcggccg ctcggaagtg tttgacgagc
     4861 acatcatcac caccacgggc gacaaggtgc aaaaccgcgc tctggcggaa atcggcggca
     4921 aagggctgtt cgccaaggaa atccacgagg cgcttgcgga agggcggatt gatttcgccg
     4981 tgcatagtct gaaggatctg gagacgaccc tgcccgatgg catcgcgctc gcctgcacgc
     5041 tgaagcgcga ggatgcgcgg gacgtgctgg tgctgccgcc cggtgccgcg gcggatgccg
     5101 ccgacccgct ggcgagcc
//
LOCUS       DASQCV010000327         6463 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_901432, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000327 DASQCV010000000
VERSION     DASQCV010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6463
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_901432"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..777
                     /locus_tag="VEQ16_04965"
     CDS             16..777
                     /locus_tag="VEQ16_04965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012553775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYP63214.1"
                     /translation="MKPGDFVWHELCTSDPVAAGDFYGKVVGWTMKPSGLPGTDYDII
                     HVGERGIGGIMSLPAEQMPPRPVWFGYVGVDNVDAKAEEIKASGGAVHKAPQDIPTVG
                     RFAVVADPQGAIFLQFKGEGEAPAPLPMMHNGSVGWNELHTNDAGAAWSFYEKMFGWS
                     KDAAHEMGPMGTYQLFKSSGMPCGGFMNDTQSSPHPYWLYYFVVDDIDAGVERVNANG
                     GSVLFGPQEVPGGAWIINAKDPQGGIFALVGMKKQ"
     gene            789..1469
                     /locus_tag="VEQ16_04970"
     CDS             789..1469
                     /locus_tag="VEQ16_04970"
                     /inference="COORDINATES: protein motif:HMM:NF014816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYP63215.1"
                     /translation="MTPTITAFKWVPEFARGFVRDIRARWAFEEAGQNYEVDLVDGVY
                     VKSQAHRYFQPFGQIPTYRDDKVEIFESGAIVMHICEMNNVLVPADPSARIKAVQWLI
                     AALNSVEPWVMQLAVVDIFEADRDWSKPRRPKVLDDLHTRLGDLAAALGEKETLDGGA
                     FTFGDLIMVSVLGGLRGRGVLDAHPNLAAYVARGEARPAHRKALADHLAVFDSQPAPV
                     GRQAEARA"
     gene            1939..2586
                     /locus_tag="VEQ16_04975"
     CDS             1939..2586
                     /locus_tag="VEQ16_04975"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HYP63216.1"
                     /translation="MEENAMAYVDWSLQGHSIANCNCDFGCPCQFNALPTHGDCRAMT
                     AVKIEKGHFGAVDLSGLAFCGMFAWPRAIHLGDGEVFPVISEHATEAQRNALLTILSG
                     QETVPGATIFNVFAATFTKMHDPVFAPIEFYLDLEKRIGRVRIPGIIDTAVEPIRNPI
                     TGSEHRVSVALPEGFEYHEAEYASGSTRAEGPIKLTLANSHSHLYDLHMTTNGVV"
     gene            2604..3431
                     /locus_tag="VEQ16_04980"
     CDS             2604..3431
                     /locus_tag="VEQ16_04980"
                     /inference="COORDINATES: protein motif:HMM:NF021465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2182 domain-containing protein"
                     /protein_id="HYP63217.1"
                     /translation="MSDPALERALLRDRWIVGACLALLVAFACLWLWRDHAAMAAWQD
                     AMAAMGMKQIEGGPMASSSAPAAYLAEAFVMWLIMMVAMMLPSAAPMILLYGKLARSL
                     CQQGGVFASTTLFAGLYLAVWGGFSTAAALLQWALVRSGAISAMGLALGDRRIAGAFL
                     VAAGLYQLTPLKHACLEKCRSPLAFLMQFWRPGLAGAARLGLTHGAYCLGCCAMLMAL
                     LFVFGVMNLGWAALLAIMVLIEKIAPGGQWIGRLAGIAALALGGAMIWSAPLEGLHL"
     gene            complement(3483..5864)
                     /gene="hrpB"
                     /locus_tag="VEQ16_04985"
     CDS             complement(3483..5864)
                     /gene="hrpB"
                     /locus_tag="VEQ16_04985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HYP63218.1"
                     /translation="MLDLPVAEILPELIRTLRDSNAVLVAPPGAGKTTLVPLAALQAG
                     ISKILLLEPRRLAARAAAMRMAELLGENVGQRIGFRTRLESAVSAATEVEVITEGLLT
                     SRLLTDQGLTGVELVIFDEIHERSLESDQALALVLDLQRTLRPELRILAMSATAEADK
                     LSRLLDAPVLESAGKIFPIQVHHIKRDILSARDLPEAAAKAVREALVAHDGDILVFLP
                     GMAEIRRTQTALEKCPALVLPLHGDLSRESQDKALREHEERRVVLATSIAETSLTVPG
                     VRIVIDGGYRRAPVLDSSSGLTRLATQRISRAAATQRAGRAGRLGPGVAIRLWTEALH
                     RGLALFETPEILSAELSGLVLACAAWGETPAALPFIDQPPDGAVKAAIALLTDLGALD
                     HAGRISALGREMARLRAEPRLAAMMLASTDRGERAMAAEIAALLEEKDFLPRDASADI
                     TLRLEALAGEGRGDRATISRIRQGAKIYRNRLGVGSASAQGHPGALLAAAFPDRIGQA
                     RGAAGSYRLAGGGSGNLSPADPLARSRLLVAASLEAKGHVIRLGAALDMEDLPDFLSA
                     RLQTTRETGFDPMAGSVLVRERVRLGNLILADRNAPASPDEIQEALAQALSTRLDQLD
                     WTDAAENLCARSAVMRQIDPEFPDLSRPALAASVQDWLAPYLSGMTNLREAKSVDVYE
                     ALRTHLGHERARELDKALPAELRLKHGIIRIDYAGPLPVASARAHVFYGTDSTPQLAG
                     GRVPLQLALLSPAQRPIAITADLAAFWRGGWADARKDMRGRYPKHDWPEEPWK"
     gene            5918..>6463
                     /locus_tag="VEQ16_04990"
     CDS             5918..>6463
                     /locus_tag="VEQ16_04990"
                     /inference="COORDINATES: protein motif:HMM:NF022853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD
                     domain-containing protein"
                     /protein_id="HYP63219.1"
                     /translation="MFLLLLLLPRLAFAAASENFTSAHGTVRLVSESNEAAGGQIRLA
                     LEFLLQPGWHIYWQNPGDAGFAPQVRLETPAVAGALEFPPPELLLQGGVVAYVLSGHV
                     VLPFTAQNVGGQVVAKAHWLVCADICVPEHAEFTLPLPGGASAEAGLFAPNGIVPSPF
                     AATLSPDGILRVAGLGPGRVSS"
BASE COUNT         1088 a         1972 c         2180 g         1223 t
ORIGIN      
        1 taggagcaga acgcgatgaa accaggtgat tttgtctggc acgagctgtg cacgtccgat
       61 cccgttgcgg cgggagattt ctacggcaag gttgtcggct ggactatgaa gccctcgggc
      121 ctgcccggca ccgattacga cattatccat gtgggcgagc gtgggattgg tggcatcatg
      181 tcgctgccgg cagagcagat gccgccgcgc ccggtgtggt tcggctatgt cggcgtcgat
      241 aatgtggacg ccaaggccga ggagatcaaa gcttccggcg gtgccgtgca caaggcaccg
      301 caggacatcc cgacggtcgg aaggtttgcc gtggtggccg atccgcaagg cgcgatcttc
      361 ctgcagttca agggcgaggg tgaggcaccg gcgccgctgc cgatgatgca taacggttcc
      421 gtcggctgga acgagctgca tacgaatgat gccggggcgg cttggtcctt ttacgaaaaa
      481 atgttcggct ggagcaagga tgcagcgcat gagatggggc cgatgggcac ctaccagctg
      541 ttcaagagca gtggcatgcc ctgcggcggt ttcatgaacg acacacagtc atcgccgcac
      601 ccatattggc tgtattattt cgtggtcgat gacatcgatg ccggtgtgga gcgggtaaac
      661 gccaacggcg gcagcgtgct gttcggcccg caggaagtgc cgggcggagc atggatcatc
      721 aatgcgaagg acccgcaagg cggcattttc gcgcttgttg gcatgaagaa acagtgaagg
      781 aggagagcat gaccccgacc attacagcat tcaaatgggt gcctgaattc gcgcgcggct
      841 tcgtgcgcga catcagggcg cgctgggcgt tcgaggaggc cggccagaac tatgaggtcg
      901 atctcgtcga tggcgtgtat gtcaagagcc aggcgcaccg ttatttccag cccttcggtc
      961 agatcccgac ctatcgcgat gacaaggtcg agattttcga atccggcgcg atcgtgatgc
     1021 atatttgcga aatgaacaac gtgctggtgc cggccgaccc atccgcgcgc ataaaggcag
     1081 tacaatggct gatcgcggcg ctcaactcgg tcgagccctg ggtgatgcag cttgccgttg
     1141 tggacatatt cgaagccgac cgcgattggt cgaaaccgcg ccggccgaaa gtgctggacg
     1201 atctgcacac gcgcctcggc gatctcgccg ccgcgctggg cgagaaggag acgctcgatg
     1261 gcggcgcctt caccttcggc gatctgatca tggtttcggt gctgggcggg ctgcgcggca
     1321 ggggtgtgct ggatgcgcat ccaaacctcg ccgcctatgt cgcccgcggc gaggcgcggc
     1381 cggcgcaccg gaaggccttg gcggatcatc tcgccgtgtt cgacagccag ccagcgccgg
     1441 tggggcggca ggcggaggcg cgcgcatgaa caagctcatc acctgcctct gttagaccat
     1501 ggcgaggcgc gcaaggccgc cgaattctat gccgccattt tttcggacag ccatgtcggc
     1561 ggcggttgcc tcagttcaag cgcggctgtc gaatgtgcga cgtggaaagt cccgataatg
     1621 acgaaagggt tttgcccgcc catgccattt ccgctacccc attgagatat tccaaggcaa
     1681 ggcaattcaa tgagttgtgt gccttgatcc ggcgcaaact gtcacatgct ccacgatttg
     1741 ccgatgattg cgcttgcctc ccgcttatag gggatgtgcg attctgttcc tggcgcgtca
     1801 ccattctgtt tccaggccgc taggtttgag gtaacctagc ggccgaggct gagccggacg
     1861 atagaaagaa tagcgagaag aacgaaatgt ccgtctgatt gcaggccctc tcgcggggcc
     1921 gccggccagc ctggcacgat ggaggagaac gccatggctt atgtcgattg gtctcttcaa
     1981 ggtcattcaa tcgccaactg caactgtgat tttggatgtc cctgccagtt caacgcgctc
     2041 ccgacgcatg gcgattgccg tgccatgacg gcggtcaaga tcgagaaggg gcatttcggc
     2101 gcggttgatc tcagcgggct ggcgttttgc ggcatgttcg cctggcccag ggcgattcac
     2161 ctcggcgatg gcgaggtgtt ccccgtgatc agcgaacacg cgaccgaggc gcagcggaac
     2221 gccctcctga cgatcctctc aggccaggag accgtgcccg gcgccacaat cttcaacgtc
     2281 ttcgcggcaa cattcaccaa gatgcacgat ccggtcttcg cgccgatcga attttacctc
     2341 gatctggaga aaaggatcgg ccgggtgcgc attcccggca tcatcgacac ggcggtcgag
     2401 cccattcgca atcctatcac cgggagcgag catcgggtca gcgtggctct gcctgaaggg
     2461 ttcgagtatc atgaggcgga gtatgccagc gggagcacga gagccgaggg gcccatcaag
     2521 ctgaccctgg ccaactcgca ttcccatctc tacgacctgc acatgacgac gaacggcgtc
     2581 gtctagcggc gggttcgcgc ccaatgtccg acccagcgct cgaacgggca cttctccgcg
     2641 accgctggat cgtcggcgcc tgcctggcgc tgctggtcgc gttcgcgtgc ctctggctct
     2701 ggcgcgatca tgccgcgatg gcggcatggc aggacgcgat ggccgccatg ggcatgaagc
     2761 agatagaggg cggccctatg gcgtcttcct ccgcgccggc ggcctatctc gccgaagcct
     2821 tcgtcatgtg gctcatcatg atggtggcga tgatgctgcc ctcggccgcg ccgatgattc
     2881 tgctttatgg caaactggcg cgcagcttgt gccagcaagg cggcgtgttt gcgtccacga
     2941 cgctgtttgc cggcttgtat cttgccgtat ggggcggctt ttccaccgcc gccgcgctgc
     3001 tccaatgggc gctggtgagg tcgggcgcca tttccgccat ggggcttgcc ctcggcgaca
     3061 ggcgcatcgc cggcgcgttt ctcgtcgcgg ctgggctgta tcaactgacg ccgctcaaac
     3121 atgcctgcct cgaaaaatgc cgctcgcctt tggcgtttct catgcaattc tggcggcctg
     3181 gcctagctgg cgccgcccgc ctcgggctga cgcatggcgc ctattgcctt ggctgttgcg
     3241 ccatgctgat ggcacttctt ttcgtcttcg gggtgatgaa cctgggttgg gccgcattat
     3301 tggcgatcat ggtgctgatc gaaaaaatcg ctccgggcgg gcaatggatc ggccggctcg
     3361 cgggtattgc ggcgctcgcc cttgggggcg caatgatttg gtctgccccc ttagaaggac
     3421 tccatctctg attatctggc tctgattatc tggcgttagt gatccgaggt tattttccca
     3481 gtttatttcc acggctcctc cggccagtca tgcttgggat agcgcccgcg catgtctttc
     3541 cgcgcatccg cccagccgcc gcgccagaag gcggcgaggt cggcggtgat ggcgataggc
     3601 cgctgcgccg gagagagcag agcgagttgc agaggcacgc gcccgcccgc gagctgcggc
     3661 gtggagtccg tgccgtagaa cacatgcgcc cgcgccgagg ccacgggcag cggaccggca
     3721 taatcgatgc ggatgatgcc gtgcttcagc cgcaattccg cgggcagcgc cttgtccagt
     3781 tcgcgggcac gctcatggcc gagatgggtc cgcagcgcct cgtatacatc cacgcttttc
     3841 gcctcgcgca gattggtcat cccggagaga taaggcgcca gccagtcctg cacgctggcg
     3901 gccagggctg ggcgtgaaag atccggaaat tccgggtcga tctggcgcat gacagcactc
     3961 ctggcacaca gattttccgc cgcatcggtc cagtcgagct ggtccagccg ggtagagagg
     4021 gcctgcgcca aagcctcctg gatttcatcc gggctggccg gggcattgcg gtcggccagg
     4081 atgagattgc cgaggcgtac ccgttcgcgc acgagaacgc tgcccgccat ggggtcgaat
     4141 ccggtttccc gcgtcgtctg cagccgggcg gacagaaaat cgggcagatc ctccatgtcc
     4201 agcgccgcgc ccagccttat gacatggcct ttcgcctcca gcgatgccgc caccaacagc
     4261 cggctgcgcg ccagcgggtc ggcgggggag agattgccag agccgccacc cgccaggcgg
     4321 taggagcccg ccgcccctcg cgcctggccg atgcggtccg ggaaggcggc ggcgagcagc
     4381 gcgcctggat ggccctgcgc cgacgcgctg cctaccccca gccggttgcg gtaaattttg
     4441 gcaccttgcc ttatgcgcga gatggtggcg cggtctccgc gtccctcacc ggccagggct
     4501 tcgagccgga gcgtgatatc ggccgaagca tcgcgcggca agaaatcctt ctcttccagc
     4561 agcgcggcaa tctccgccgc catggcgcgc tcgcctctat ccgtgctcgc cagcatcatg
     4621 gcggccaaac gcggctcggc gcgcagccgc gccatttctc ggcccagcgc ggaaatgcgg
     4681 cctgcatggt cgagcgcgcc gagatcagtg agcaaagcaa tggcggcctt caccgctcca
     4741 tccggcggct ggtcgatgaa gggcagggcg gctggcgtct cgccccaggc ggcgcaggcc
     4801 aggacgagac cggagagttc ggcggacaaa atttccggcg tctcgaacaa ggccagcccg
     4861 cgatgtagcg cctctgtcca gagccggatg gccacacccg gcccgaggcg cccggcacgg
     4921 ccggcgcgct gtgtggcggc ggcgcgggag atgcgctggg tcgcgaggcg cgtgagcccg
     4981 gaagaggaat ctagcaccgg cgcgcggcgg tacccgccat cgatgacgat gcgcacgccc
     5041 ggcacggtga gcgaggtttc ggcgatggag gtggccagca ccacacgccg ctcctcatgc
     5101 tcgcgcaagg ccttgtcctg ggactcgcgc gagagatcgc catgcaaagg cagaacaagc
     5161 gccgggcatt tttccagcgc cgtttgagta cggcggattt ccgccatgcc ggggaggaag
     5221 accaatatgt cgccgtcatg cgccaccagc gcctcacgca cggctttcgc ggcagcttcg
     5281 ggcaggtcgc gggcggacaa aatgtcccgt tttatgtgat gcacctggat cgggaagatt
     5341 tttccggcac tctccagcac cggcgcgtcg agcaggcgcg acaatttgtc cgcctcggcg
     5401 gtggcggaca tggcgaggat acgcagctcc gggcgcaatg tccgctgcaa atcgagcacc
     5461 agggccaaag cctggtcgga ttccaagctg cgctcatgga tttcgtcgaa aatgaccagc
     5521 tccaccccgg tcagcccctg gtcggtgagc aggcgggagg tgagcagccc ttcggtgatc
     5581 acctccactt ccgtggcggc gctgaccgcg ctttccagcc gggtgcggaa gccgatgcgc
     5641 tgccccacat tctcgcccag taattccgcc atgcgcatgg cggcggcgcg ggcggcgagg
     5701 cggcgtggtt ccaggagcag aattttgctt atgcccgcct gtagggcggc gagtggcacg
     5761 agggtggtct tgccggcgcc gggcggggcg acgagcacgg cattgctgtc gcgcaaagtg
     5821 cggatgagct cggggaggat ttcggcgacg ggcaggtcca gcatcgcgcc cggataccag
     5881 agcgaggccg ggcgtgcgat aggagggtat gcgttggttg tttttgctcc ttctgcttct
     5941 tccccggctg gcttttgcgg cggcgagtga gaatttcacc tccgcccacg gcacagtgcg
     6001 gctggtgtca gagagcaatg aggcggcggg cgggcaaatc cggctggcgt tggaattttt
     6061 gctccagccg ggctggcata tttactggca gaatcccggc gatgcggggt tcgccccgca
     6121 ggtgaggctg gaaacgccgg ctgtggcagg ggcgctggaa tttccaccgc ctgagttgct
     6181 gctccagggc ggggtggtag cctatgtgct atccggccat gtggtgctgc cctttacggc
     6241 gcaaaatgtg ggtgggcagg tggtggccaa ggcgcactgg ctggtctgcg cggatatctg
     6301 cgtgccggag catgcggaat tcactctgcc attgccgggc ggggcctcgg ccgaggcggg
     6361 gctgtttgca ccgaatggca tcgtgccgtc gccttttgcc gccacgcttt cgccggacgg
     6421 cattttgcgc gtggccgggc tggggccggg gcgggtaagc tcg
//
LOCUS       DASQCV010000328         2750 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2559359, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000328 DASQCV010000000
VERSION     DASQCV010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2750
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2559359"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..801)
                     /locus_tag="VEQ16_04995"
     CDS             complement(<1..801)
                     /locus_tag="VEQ16_04995"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63220.1"
                     /translation="MAELRGIPVVVTGAGGWLGQAALELAHNAGALVHAYGATARTHR
                     LQDGTILPILPLSALDDLALPNALVLHFAFLTREHAGRMAESDYIATNRAISDRVDAF
                     IRRNGARGVFVPSSGAVYAPPPNPYGDCKLEDEARFAALGKELSIPTVIIRVFNLAGP
                     FINKLDSYALACILRDLLAGRPVTLRAAHPVWRGYAHVNDVLEIALGLLLAGQSPPVF
                     DSWGEPVEISDLTLRAARLLGKTPIIERPDWQDGSPDHYLGDGTAYRAH"
     gene            complement(814..2592)
                     /locus_tag="VEQ16_05000"
     CDS             complement(814..2592)
                     /locus_tag="VEQ16_05000"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HYP63221.1"
                     /translation="MRVADYIAALVAAHGIRDVFTVTGGGAMHLNDAFSRHQDLRGIC
                     LHHEQACAMAAEAYCRLSGRLALVNVTTGPGGINALNGVHGAWTDSIGMLVISGQVKQ
                     ETMATSYDLPLRQLGDQEADIVAMVQGITKYAVVLRDKQDTRYVVEKAIHLARTGRPG
                     PVWIDVPMDVQGAQIDPDTLRGFVPEPDEALPDVAAIAELLRKAERPVIMPGTGVRIA
                     GAYEEFLRLVELTHFPVATAFNAHDLLPEDHPAYAGRPGTVGDRAGNFAVQNADVVLI
                     LGCRLNIRQISYNWENFAPNAVKIMVDIDPAELAKPTLSIQKPVRADLKAFIPALIAS
                     LGNFAPSATQREYLAWCQERRRLHPVVRPEYEDDSRGINPYIFADRLSDMAGAEDVIV
                     TANATACVTTFQAAKLKAGQRMFSNSGSASMGYDLPAAIGAACAAPGRRVICLSGDGS
                     FMMNLQEMQSIITLGLDVKIFLLNNAGYSSIRQTQSAFFPDNMFGCDPASGVGFPDFC
                     KLAAAFGFTPLRASMHAELPAAIAATLVAPGPQFCEIMLDPAQVFAPKLSSRKLEDGR
                     MVSSPLHDMAPFLSREELAANMWPGA"
BASE COUNT          533 a          877 c          885 g          455 t
ORIGIN      
        1 gtgcgcgcga tatgccgtgc catcgccgag ataatgatcc gggctgccgt cctgccaatc
       61 cggccgctcg atgatgggtg tcttgccaag caggcgcgca gcgcgaaggg tgaggtccga
      121 gatttcgacg ggctcacccc agctatcgaa cacaggcggc gactgccccg ccagcaacag
      181 gccgagcgcg atttccagca cgtcattcac atgcgcatag ccgcgccaga cgggatgggc
      241 ggcgcgcagc gtcacggggc ggccggcgag caggtctcgc aggatgcagg cgagagcgta
      301 ggaatcgagc ttgttgatga aggggccggc gaggttgaag acacggatta tgacggtggg
      361 gatcgaaagc tctttgccca atgccgcgaa ccgggcttcg tcttccagct tgcaatcgcc
      421 atagggattt ggtggcggcg cgtacacagc accggaggac ggcacgaaaa cgccgcgcgc
      481 cccgttgcgg cggatgaagg catcaacccg gtccgagatg gcgcggttgg tggcgatata
      541 gtccgattct gccatccgcc cggcatgctc gcgcgtgaga aacgcgaaat gcagcaccag
      601 cgcgtttgga agggccagat catccaaggc ggataaagga agaatgggca ggattgtgcc
      661 atcctgcagc ctgtgcgtgc gcgccgtggc gccgtaggca tgcaccaggg cgcctgcatt
      721 atgcgccagc tccaaggccg cctggccgag ccatccgccc gcgccggtga cgacaaccgg
      781 gatgccgcgc agttcagcca tgggacaaaa agctcaagct cccggccaca tattcgcggc
      841 cagctcctcg cgcgacagga agggggccat gtcgtgcagc ggcgacgaca ccatgcgccc
      901 atcctccagc ttgcgtgaag aaagtttcgg cgcgaagacc tgcgcggggt ccagcatgat
      961 ttcgcagaat tgcggcccgg gtgctaccag tgttgcggca atggcggcgg gcagctccgc
     1021 atgcatgctc gcacgaagcg gcgtgaagcc gaatgcggca gcgagcttgc agaaatccgg
     1081 aaaccccacg ccgctcgccg gatcgcagcc gaacatattg tcggggaaga aggcgctctg
     1141 cgtctgccgg atggaggaat agcccgcatt gttcagcagg aagattttga cgtcgagccc
     1201 gagcgtgatg atgctctgca tctcctgcag gttcatcatg aagctgccat cgccggagag
     1261 gcagatcacc cgccgtcccg gcgccgcgca ggccgcgccg atggcggctg gcagatcata
     1321 gcccatggag gccgagccgg aattggaaaa catgcgctgc ccggctttga gtttcgccgc
     1381 ctggaaggtg gtgacgcagg ccgtggcatt ggcggtgacg atgacatcct ccgcccccgc
     1441 catgtcggaa agccggtccg cgaaaatgta cggattgatg ccccgggaat catcctcata
     1501 ttccggccgc accaccggat gcagccgccg ccgctcctgg caccaggcaa gatattcgcg
     1561 ctgcgtggcg gagggcgcga aattgcccag cgaagcgata agcgcgggaa tgaacgcctt
     1621 aaggtccgcg cgcaccggtt tctggatact cagcgtcggc ttcgccaact ccgccgggtc
     1681 gatatcgacc atgattttca cggcattcgg cgcgaaattt tcccaattat aggaaatctg
     1741 cctgatattc agccggcagc cgagaatgag caccacatcc gcattctgca cggcgaaatt
     1801 cccagcgcgg tcgcccaccg tgcccggcct tccggcataa gcggggtggt cttccggcag
     1861 caaatcatgc gcgttgaagg ccgtcgccac ggggaagtgt gtcagctcca ccaggcgcag
     1921 aaattcctca taggcgccgg caatccgcac gcccgtgccc ggcatgatga cgggccgctc
     1981 cgccttgcga agaagttcgg caatggctgc gacatccggc agcgcctcat ccggttccgg
     2041 cacgaagccg cgtagcgtgt ccgggtcgat ctgcgcgccc tgcacatcca tcggcacgtc
     2101 gatccagacc ggccccggcc gtcccgtccg cgccagatgg atcgccttct ccaccacata
     2161 gcgtgtgtcc tgcttgtcgc gcagcacaac ggcgtatttc gtgatgcctt gcaccatggc
     2221 gacgatatcc gcctcctggt cgccaagctg gcgcaagggg aggtcataac tcgtcgccat
     2281 cgtctcctgc ttcacctggc cagagatgac gagcatgccg atggaatccg tccaggcccc
     2341 atgcacgcca ttcagcgcat tgatgccgcc gggtcctgtc gtcacattca ccaaagcgag
     2401 ccggccggag agccggcaat aggcctccgc cgccatggca caggcctgct catgatgcag
     2461 gcagatgccg cgcaaatcct gatggcgcga gaacgcatca ttgagatgca tcgcgccgcc
     2521 gccggtcacg gtaaagacat cccggatgcc gtgcgccgcc accagggcag cgatatagtc
     2581 agcaacccgc aagggtcaca ccaaacgcgg cccgttgcgg gcaggctcgg gttcggcggg
     2641 ggcgatgccg cgctgctcga tggtcttcgc cagcagcgag tccgcgccgt aggggctgtc
     2701 gatattattg aaggcgatgg cgccatcctt gggcgcggca tgcagcagca
//
LOCUS       DASQCV010000329         2229 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3057918, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000329 DASQCV010000000
VERSION     DASQCV010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3057918"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..151
                     /locus_tag="VEQ16_05005"
     CDS             <1..151
                     /locus_tag="VEQ16_05005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ammonia channel protein"
                     /protein_id="HYP63222.1"
                     /translation="IVTTIVYCGVASFIILKLIDLTMGLRVSQDDEREGLDIAQHGEV
                     LQHTA"
     gene            322..1698
                     /locus_tag="VEQ16_05010"
     CDS             322..1698
                     /locus_tag="VEQ16_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013635015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HYP63223.1"
                     /translation="MAIVPALPGSWLDTGDNAWQLTAATFVGLQSVPGLVVLYGGIVK
                     KKWAINSAFMAFYAFAAVLIVWLLWSYNMAFGKPWLTMPVIGGGNQFLGHPGQITSAW
                     NETKEAVIPAAAGGMPPIGFPMATMVFFQFVFAAITVIILQGSILGRMSFKAWMIFVP
                     VWMSIIYPIGAFSLWAGGWLGSMGVVDYSGGYVIHLTAAASGFTAAAVIGPRLPRDRE
                     NFQPNNLLITMVGAGILWLGWNGFNGGDPYFANADAGAAVLNTNAATAAALLTWTVLD
                     VFAYNKPSILGAVNGMIAGLVAITPAAGYINGAEAMILGVVAGLLPWMTWNLLGKTWL
                     FRKVDDVLGVFHTHGVAAIVGGLGTGVLADPGMIEYFGTGKDSNFSVTGGIFGNWHQV
                     ILQIYGAAFIIVLNVIGTFIILKVIGLVVPLRLDEEALLIGDDALHGEEAYAIYGDGS
                     SRLPVLGD"
     gene            1932..>2229
                     /locus_tag="VEQ16_05015"
     CDS             1932..>2229
                     /locus_tag="VEQ16_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013635015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63224.1"
                     /translation="MSIVQALPGSWLDTGDNAWQLTAATLVGIQSVPGLAILYGGAVK
                     KKWAINSAFMVFYAFSAVLLVWVLWAYSMSFGKPWLQMPGGLGAFLGHVSPVTSA"
BASE COUNT          382 a          697 c          677 g          473 t
ORIGIN      
        1 catcgtcact accatcgtct attgcggcgt agccagcttc atcatcctca agctgatcga
       61 cctgaccatg ggtctgcgcg tcagccagga tgacgagcgt gaagggctcg acatcgccca
      121 gcacggcgaa gtgctgcagc acacggcctg atatcggggg ctccaaatcc ccggactcat
      181 cggaaccctc atgccgggac cggcatgggg gcttttcgtt gtgatggttg tggcatggaa
      241 aatgcttaac cgctgatggc gccgcgtccc cacgcgcgca ccgtatgcaa cacatggctg
      301 ggacgtttgg agagaagaga aatggcaata gtacctgctt taccgggcag ttggctcgat
      361 accggcgaca atgcctggca gctcacggcg gcgactttcg tcggcttgca gagcgtgccg
      421 ggcttggtgg tgctctatgg cggcatcgtc aagaagaaat gggcgatcaa ctcggccttc
      481 atggccttct atgccttcgc ggcggtgctg atcgtctggc tgctctggtc ctataacatg
      541 gccttcggca agccgtggct caccatgccg gtgattggcg gcggcaacca gttccttggc
      601 catccggggc agatcacctc ggcctggaac gagaccaagg aagccgttat tcccgccgcc
      661 gccggaggca tgccacccat cggcttcccc atggcgacga tggtgttctt ccaattcgtc
      721 ttcgcggcca tcacggtcat cattctgcag ggctccattc tcggccgtat gagcttcaag
      781 gcctggatga tctttgtccc ggtgtggatg tccatcatct acccgatcgg tgccttctct
      841 ctctgggccg gcggctggct tggctccatg ggcgtggtcg actactcggg cggttacgtc
      901 attcacttga ccgccgccgc ctccggcttc accgcggccg ccgtcatcgg cccgcgtctg
      961 ccgcgcgacc gcgagaactt ccagcccaac aacctgctca tcaccatggt cggtgccggc
     1021 attctgtggc tcggctggaa cggcttcaat ggcggtgacc cgtacttcgc caacgccgac
     1081 gccggcgccg cggtgctgaa caccaacgcc gccaccgccg ccgcgctgct cacctggacc
     1141 gtgctggacg tgtttgccta caacaagccc tccatcctgg gtgctgtgaa cggcatgatc
     1201 gcgggcctcg tcgccatcac cccggcggct ggctacatca acggcgcgga agccatgatc
     1261 cttggcgtcg tcgccggtct gttgccctgg atgacttgga acctgctcgg caagacctgg
     1321 ctgttccgca aggtggatga cgtgctcggc gtgttccaca ctcacggcgt ggcggccatc
     1381 gtcggcggcc tcggcaccgg cgtcctcgcc gacccgggca tgatcgagta tttcggcacc
     1441 ggcaaggaca gcaatttctc tgtcacgggc ggtatcttcg gcaactggca ccaagtgatc
     1501 ctgcagatct atggcgccgc cttcatcatc gtgctcaacg tcatcggtac cttcatcatc
     1561 ctgaaagtca tcggcctcgt cgtgccgctg cgcctggatg aggaggccct gctcatcggc
     1621 gacgacgcgc tgcatggcga agaggcctat gccatctatg gcgacggttc gagccgcctg
     1681 ccggtgctgg gcgactgaac aaagtaaaat ctgggagacg aaggaaacag cgccctcgcg
     1741 gcgctgtttc tgcgtttgcg ggcagtcgcg cggacgccgc aagtcaagtt gtttccttaa
     1801 ggcaatgtaa ataggaccgc ttctggcatg aaaactgctt aatcttttct gtccggctgc
     1861 cgccaggggc agccgggggg agcattttgc gaccgtacca acactgggga caaattgatg
     1921 gaggctgatc aatgtcgata gtgcaagcat taccaggaag ctggctggat acgggcgata
     1981 atgcctggca gctcaccgcc gccacattgg tgggaatcca gagcgttccg ggcctcgcca
     2041 ttctctatgg cggcgcggtg aagaaaaaat gggcaattaa ttccgccttc atggtgtttt
     2101 atgccttctc ggcggtcctc cttgtctggg tgctgtgggc gtacagcatg tccttcggca
     2161 agccctggct gcagatgccg ggcgggcttg gggcgttcct cggccatgtc agccccgtca
     2221 cctcggcct
//
LOCUS       DASQCV010000330         1586 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2061728, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000330 DASQCV010000000
VERSION     DASQCV010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2061728"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..940)
                     /locus_tag="VEQ16_05020"
     CDS             complement(143..940)
                     /locus_tag="VEQ16_05020"
                     /inference="COORDINATES: protein motif:HMM:NF020478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1849 family protein"
                     /protein_id="HYP63225.1"
                     /translation="MKTSALALLSLLAPGFAASPAAAASALTGQHALYNFTLTKLRTH
                     DITGATGQMSFDVVDGCTGWATTQHMTLLIRNVDGSLDKSVSDYMTWESKDGKTLTFT
                     TRESDNDGPEQVDDAGSATRDADGSGVVNYRSPTKVKYSLPPGTLFPMQHTEALLAAG
                     DNGQSFIAPLLFDGTGTTGAQATFVAVLKHHPGGKTDWPALDGIPSTDVDISFFTRKN
                     DDENPNFRTSMRYFEDGVATDLVLDFGDFVMNGKLTRLTIPPSPCPK"
     gene            complement(993..>1586)
                     /locus_tag="VEQ16_05025"
     CDS             complement(993..>1586)
                     /locus_tag="VEQ16_05025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrB/UvrC motif-containing protein"
                     /protein_id="HYP63226.1"
                     /translation="LREGLDIPECMLVAILDADKEGFLRSVTSLIQTIGRAARNVDGR
                     VILYADTMTQSLKQALGETERRRAKQMAWNEAHGITPQSVRKNIGEVIHSVFEQDYVT
                     VAPVKNSAADEFVGKDLGTVIATLETRMRAAAANLEFEEAARLRDEIKRLEALELGVP
                     PPPVARSSTPKGPVPLGPGGGGYDPAMVKKSRGRRTR"
BASE COUNT          287 a          468 c          498 g          333 t
ORIGIN      
        1 agactcgtcg atggcgggaa tgagcatggc cgcgccaagc taaggctgcg ctgatttcag
       61 aaaatgcacc tgtttccttg aaaaaaggcg attctcggaa aaagggcggc gtcccaaaac
      121 atgtctataa tttcgctttg cgtcatttcg ggcaaggtga aggcggaatg gtgagccggg
      181 tcagtttccc attcattacg aaatcgccga aatcaagcac caagtcagtt gccacgccgt
      241 cctcgaagta acgcatcgag gtgcggaagt tcgggttctc atcgtcattc ttgcgcgtga
      301 agaaggagat atcgacatcc gtgctcggaa ttccgtccag cgcgggccag tccgtcttgc
      361 cgccgggatg gtgcttgagc acggccacga aggtggcctg ggcgccggtg gtgccggtgc
      421 cgtcgaacaa gaggggggcg atgaagctct ggccattatc gccggcggcc agcaatgctt
      481 ctgtgtgttg cataggaaaa agtgtgccgg gcggcaggga atatttcacc ttagtggggg
      541 atctataatt caccaccccg ctgccatccg catcgcgcgt ggcgctgccg gcatcatcca
      601 cctgctccgg cccgtcatta tcgctctcgc gcgtggtaaa agtgagggtt ttgccatcct
      661 tgctttccca ggtcatatag tcgctcaccg atttatcgag cgaaccatcc acattgcgga
      721 tcagcagcgt catatgctgg gtcgtggccc agccggtgca gccatccacc acgtcgaagc
      781 tcatttgccc ggtggcgcca gtaatgtcgt gggtgcgcag cttggtgagt gtgaaattat
      841 agagcgcatg ctggccggtg agggcggacg ccgccgcggc cgggctggcg gcaaagccag
      901 gggcgagcag ggaaagaagg gcgagggcgg atgtcttcat ggctgcataa tgccagcggc
      961 gggagcgccg tcaaacctgg tttcttgttt actcatcttg tccgccttcc cctgcttttt
     1021 ttcaccatgg cggggtcgta cccgccgccg ccaggcccca gcggcaccgg gcctttgggc
     1081 gtggaactgc gtgccactgg cggaggcggc acgcccagtt ccagcgcttc cagccgcttg
     1141 atctcgtcgc gcagacgcgc cgcttcctcg aattccagat tggcggcggc ggcgcgcatg
     1201 cgcgtttcca gcgtggcgat gacggtgccg agatccttgc cgacgaactc gtccgccgcg
     1261 ctgttcttca ccggcgcgac ggtgacgtaa tcctgctcga acaccgaatg gataacctcg
     1321 ccgatattct tgcgcaccga ttgcggggtg atgccatgcg cctcgttcca ggccatctgc
     1381 ttggcccggc gccgctcggt ttcgccaagc gcttgcttta agctctgcgt catcgtgtcg
     1441 gcatagagga tgacccgtcc atccacattg cgcgcggcgc ggccgatggt ctggatgagc
     1501 gaggtgacgg agcggaggaa tccttccttg tccgcatcga gaatcgcgac gagcatgcat
     1561 tccggaatat ccagcccctc gcgcag
//
LOCUS       DASQCV010000331         1998 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2062416, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000331 DASQCV010000000
VERSION     DASQCV010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2062416"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..730
                     /locus_tag="VEQ16_05030"
     CDS             <1..730
                     /locus_tag="VEQ16_05030"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP63227.1"
                     /translation="LVRRRVAVIVAMGASEALAAKAVTTTIPIVFIMGGDPVALGLVA
                     SLNRPGANLTGTAILTGELAPKQLQLLRDLVPNAAVFGVLTDPAVSYTPSIIADLQAA
                     APTLGLQLVIASARTDGDLETAFATFSQRRVGAVLFGASTLYARRMEQLAALAVRHAL
                     PTIYTFRDYALAGGLMSYGSSLGYVWHQLGISTGRILKGEKPADLPVQQITKIDLVIN
                     LKTAKALGLTIPETLLATADEVIQ"
     gene            727..1716
                     /locus_tag="VEQ16_05035"
     CDS             727..1716
                     /locus_tag="VEQ16_05035"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP63228.1"
                     /translation="MKRRQFIAALGSVAAWPVVARAQQPAVLVVGFLSPSSAVDYQIE
                     TVPFLQGLKEAGYVEGQNVAIEYRWAENQYDRLPALAAELVRRRVAVIAAGGTTAALA
                     AKAETKTIPIVFGSGLDPVKLGLVASLNRPGANLTGSSVLAGELAPRRLQLLRELTPN
                     AAVFGLLSDFTAVTFTAATQSIITDLQAAARTLGLQLIVVNTRTDCDLEMAFATFAQQ
                     GVGAVLVFNSTFYNRRMEQLAVLAARHALPAIFPYREFAQAGGLMSYGSSVGYLLHQA
                     GIYTGRILKGEKPSDLPVEQATKLELVINLKTAKALGLTIPETLLATADEVIQ"
     gene            1713..1979
                     /locus_tag="VEQ16_05040"
     CDS             1713..1979
                     /locus_tag="VEQ16_05040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63229.1"
                     /translation="MKRREFIAGLGTVAAWPVVGRAQQAALPVIGFLNPQSDDGSNKA
                     FQIAFLQGLKETGYVEGQNVVVEYRWAENQYDRLPALEISSAAA"
BASE COUNT          380 a          628 c          598 g          392 t
ORIGIN      
        1 tctcgtccgc cgccgcgtgg cggtgatcgt agccatgggc gcctccgaag cgctggcggc
       61 caaggcagtg accacgacca taccgatagt ttttattatg ggcggtgatc cggtcgcatt
      121 gggtcttgtc gccagcctca accgacccgg cgcgaacctt accggcacag ccattttaac
      181 gggcgagctg gcgccgaaac aattgcaatt gctccgagac ttggtgccca atgctgccgt
      241 ctttggcgtt ctcacggacc cggcagtttc gtatacccca tccataattg cagacctgca
      301 ggcggcggcg cccacgctgg gcctgcaact cgttattgcg agtgccagaa ccgatggcga
      361 tctcgaaacg gccttcgcaa ctttctcgca gcggcgcgtt ggtgcggtcc tgttcggcgc
      421 cagtactctc tacgcccggc gcatggagca actcgcggcg ctggcggtcc gccatgcgct
      481 gcccacgatc tacacattcc gtgactacgc cctcgccggc ggtctgatga gctatggcag
      541 cagcctcggc tatgtatggc accaactcgg catctctacc ggacgcattc tcaagggtga
      601 gaagccagca gacctccccg tacagcagat cacaaaaatc gatctggtca tcaacctcaa
      661 gaccgccaag gccctcggcc tcaccatccc ggaaacgctg ttggccactg ccgacgaggt
      721 cattcaatga agcgtcggca attcatcgcg gcgctcggga gcgtggcggc gtggccggtg
      781 gtggcgcggg cgcagcagcc ggcggtgctg gtggtcgggt tcctcagccc ctcttccgct
      841 gttgactacc agatcgaaac cgttccgttt ctccagggac tgaaggaagc cggttatgtc
      901 gagggccaaa acgtggcgat cgaataccgc tgggcggaaa atcaatatga ccggctgccg
      961 gcgcttgccg ccgaactcgt ccgccgccgt gtggcggtga tcgcagccgg cggcaccacc
     1021 gcagcactgg cggcaaaggc agagaccaag accataccga tcgtctttgg ctccggtctt
     1081 gacccggtca aattgggcct tgttgccagc ctcaaccggc ccggtgcgaa cctcaccggc
     1141 agctccgttt tagcgggcga actggcgccg agacgattgc aattgctccg cgagttgaca
     1201 cccaatgctg ccgtgttcgg ccttctctcg gacttcactg cggttacctt cactgcggct
     1261 acccaatcta tcatcacaga cctgcaggcg gcggcgcgca cgctggggct gcaactcatt
     1321 gttgtgaata ccagaaccga ctgcgatctc gaaatggcgt tcgcaacttt tgcgcaacag
     1381 ggcgtgggtg cggttctggt cttcaacagt accttttaca accggcgcat ggaacaactc
     1441 gcggtgctgg cggcccgcca tgcgttgccc gcaattttcc cataccgaga gttcgcccag
     1501 gccggcggtt tgatgagcta tggcagcagc gtcggctatc tgttgcacca agctggcatc
     1561 tatactgggc gcattctcaa aggcgagaaa ccatccgatc tgccagttga gcaggcgacc
     1621 aagttggaat tggtcattaa cctcaagacc gccaaagcgc tcggccttac cattccggaa
     1681 acgctgttgg cgaccgctga cgaggttatt caatgaaacg gcgagagttc atcgcggggc
     1741 tcgggaccgt agcggcgtgg ccggtggtgg ggcgggcgca gcaggcagca ttgccggtga
     1801 tcggcttcct caacccccaa tccgatgatg gctccaacaa ggcctttcag atcgcgttcc
     1861 tccagggtct gaaggaaacc ggctacgtcg agggccagaa cgtcgtggtg gaataccgct
     1921 gggcggaaaa tcaatacgat cggctgccgg cgctcgagat ctcgtccgcc gccgcgtagc
     1981 ggtgatagta gccagcac
//
LOCUS       DASQCV010000332         2023 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3223256, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000332 DASQCV010000000
VERSION     DASQCV010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3223256"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..944)
                     /locus_tag="VEQ16_05045"
     CDS             complement(<1..944)
                     /locus_tag="VEQ16_05045"
                     /inference="COORDINATES: protein motif:HMM:NF037025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tip lysozyme"
                     /protein_id="HYP63230.1"
                     /translation="MATFQAGKNWKDVDQKFLETLKAYAEKFEANSGYDVSFYSGYRP
                     GSGQSEHGHGEAVDIRLTDRNTGQALPNYQVHGNPEVTRAYQSFANGLKGYADQNAPE
                     IGQNLRWGGYFSGVGNPSKYGAMDLMHFDLGGRRGMGMLGGDFQHGFTPAQARTYGIQ
                     PGGGMGDTASLMKQQGAQGSAQPVAGAQPIPKPPGTPTPPGNVPYTGAVGSWMGFAMR
                     PVDQGGLGLNRAQAAGLVGNLQQESFSDLRLNATGDQGTAHGIAQWRGDRWAGLQQYA
                     AANGMNPNSHEAQQGFMRQELMGGYKGAYAALQAARTP"
     gene            complement(1069..>2023)
                     /locus_tag="VEQ16_05050"
     CDS             complement(1069..>2023)
                     /locus_tag="VEQ16_05050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63231.1"
                     /translation="CQMQLPTKAELKQQMMGIEQQLNQQKAQVGRIVQMPQVQQAVSK
                     NPGMAQQGIQQFQQVQAHAQQMMTQLASKPTVEDVMAFIRNNRARAYVLDIETDSTIF
                     PDEQLEKQRRAEFMQVLSQLLPQLAQLIAAKPESAQFCGELLKFAIAPYRVGRSLDGA
                     IDQLVAQMEQGGSQQQQPSIQQQQLEFEQQKLQWQGSENDKDRQLKMQEAASQERIEQ
                     MKMSGQQAVARGDAQNDMRESNAKVLQIAAKTQQDKQKGDTAMMLAQQKSMLAQRESE
                     NRQAMAREDAASRRQQAGEMHQQRMQQAAARPPPAGPGGLR"
BASE COUNT          313 a          694 c          588 g          428 t
ORIGIN      
        1 tccggcgtgc gcgcggcctg gagcgcggcg taggcgccct tgtagccacc catcagctcc
       61 tgccgcatga agccctgctg cgcctcgtgc gagttggggt tcatgccgtt cgcggccgcg
      121 tattgctgca gcccggccca gcgatcgccg cgccattgcg cgatcccgtg ggcggtcccc
      181 tggtcccccg tggcgttcaa gcgtaggtcg gagaagctct cctgctgcag attgcccacg
      241 aggcccgccg cctgcgcccg gttgagcccc agcccaccct gatccacagg acgcatggca
      301 aaacccatcc acgagcccac ggcgccggtg tacggcacgt tccccggagg cgtcggcgtg
      361 cctggaggtt tcgggatcgg ctgggctcca gccacaggtt gtgctgagcc ctgcgcgccc
      421 tgctgcttca tcagcgacgc ggtgtcgccc atgccgccgc ccggctgaat gccgtaggtg
      481 cgcgcctgcg ccggtgtgaa gccgtgctga aaatcgccgc ccagcattcc catcccgcgg
      541 cgcccgccca ggtcgaaatg catcaggtcc attgccccgt atttcgacgg gtttccgacg
      601 cctgagaaat agccgcccca gcgcaggttt tgaccaatct cgggcgcatt ctgatcggcg
      661 tagcctttca gcccgttagc gaaagactgg taggcgcgcg tgacttccgg gttgccgtgc
      721 acttggtagt tcggcagcgc ctgcccggtg ttgcggtccg tgagccggat atcaactgcc
      781 tcgccgtgcc cgtgctccga ctgcccggag cccggccgat agccggagta gaagctcacg
      841 tcatagccgg aattagcctc gaatttttcg gcataggctt tgagcgtctc cagaaacttc
      901 tgatcgacgt ctttccaatt cttcccggct tggaacgtgg ccatcagtca ctcctcggtc
      961 gagtcgacgc caaattgatc agcgccatgg cgaacacgcc tatcagcccg cctgcgcaga
     1021 cggagatcac cacagttgtc cagaactcca cggtgcctaa gcaattggtc acctaagccc
     1081 tccaggtccg gccggaggcg ggcgcgctgc cgcctgctgc atgcgctgct gatgcatctc
     1141 gccagcctgc tgcctgcgcg acgcggcatc ctcgcgcgcc atagcctgcc ggttctcaga
     1201 ctcccgctgg gcaagcattg acttttgctg tgccagcatc atcgcggtat cacccttctg
     1261 cttgtcctgc tgcgtcttgg cggcaatctg cagaaccttg gcgttcgact cgcgcatatc
     1321 gttctgcgcg tcgccgcgag caaccgcctg ctgcccggac attttcattt gctcgatccg
     1381 ctcctgactg gcagcctcct gcatcttaag ctgacggtcc ttatcgttct cggagccctg
     1441 ccattgaagt ttctgctgct caaactcgag ttgctgctgt tgaatcgacg gctgctgctg
     1501 ttgacttccg ccctgctcca tctgtgcgac aagctgatct attgcaccgt ccagcgagcg
     1561 acctacgcgg tagggcgcaa tggcgaactt aagcagctcg ccgcagaact gcgcgctctc
     1621 cggtttcgcc gcgatcaact gcgcgagctg cggcagcaac tgggaaagca cctgcataaa
     1681 ctcggcgcgg cgctgcttct ccaactgttc gtccgggaag atcgttgagt ccgtctcgat
     1741 atcgagcacg tacgccctcg cccggttgtt ccggatgaag gccatcacat cctccacagt
     1801 gggcttggag gcaagctgcg tcatcatctg ctgggcgtgc gcctgcacct gctgaaactg
     1861 ctggataccc tgctgcgcca tgccggggtt cttggagacc gcctgctgca cctgcggcat
     1921 ctgcacgatc cgcccgacct gcgccttctg ctgattgagc tgctgctcga tccccatcat
     1981 ctgctgttta agctcagcct ttgtgggaag ctgcatctga cac
//
LOCUS       DASQCV010000333         1597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1400780, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000333 DASQCV010000000
VERSION     DASQCV010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1400780"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1167)
                     /locus_tag="VEQ16_05055"
     CDS             complement(<1..1167)
                     /locus_tag="VEQ16_05055"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63232.1"
                     /translation="MKSIPSSAGIPVSVSDRRQRAAVPVCALILLSAGTIREVDPSSV
                     LWTTPSILAAAMLIAWAAESAQFFIAQGFALAILAWLQTLPEFAVEAVLAWKQQVALL
                     MANLTGALRLLTGLGWPMIYFTAALFHRSRKNEPLRRIRLADEHSIEVIGLLAAIGYG
                     TVVWAKASLDLVDAAVLIGIYLAYLAVLQRMPPVGEESIEQLERIPRAIVTARRGIRI
                     GLITALFIVGGGLIYFMAEPFLASLLAVSASLGVPNFVFIQWVAPFVSEFPEKVSAFY
                     WARTVDRASTALMNMVSSNINQWTLLAAMLPITYSLSLGAASAIPLDSQQELEVLMTL
                     GQSLVAALFLVNMRLAWWEAAGLFGLWLIQFSLSPVSPGPGFWGLLARYIHRAVT"
     gene            complement(1118..>1597)
                     /locus_tag="VEQ16_05060"
     CDS             complement(1118..>1597)
                     /locus_tag="VEQ16_05060"
                     /inference="COORDINATES: protein motif:HMM:NF014907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYP63233.1"
                     /translation="LAGLFAAGEVACTGVHGANRLASNSLLEGVVFGARAGRAMREAI
                     SAPLVSSGQAPRFDRPLVSAGEVRQIAWELCGIVRCGDQLRQAVARLEDDGGEAGPLT
                     RGRAETRNLRQVALLIARCALGREESRGAHFRTDFPVKRAEFEKHSIVRRDSGVGFR"
BASE COUNT          335 a          522 c          512 g          228 t
ORIGIN      
        1 ggtgacggcg cgatggatgt acctggccag caagccccag aagcccggcc ccggcgaaac
       61 cggcgacaag gagaactgta ttagccagag gccgaacagg cctgccgcct cccaccaggc
      121 gagacgcata ttcaccagga acagcgccgc gaccagcgat tggcctagtg tcatcagcac
      181 ctccagctcc tgctgggagt cgagcgggat ggcactagcg gcgccgagac tgagcgaata
      241 ggtgatgggc agcatggccg ccagcagggt ccactggttg atgttgctcg agaccatgtt
      301 catcagggcg gtggaagcac ggtccaccgt gcgcgcccag taaaaggcag aaaccttttc
      361 cggaaactcc gacacgaagg gcgccaccca ctggatgaag acgaagttcg gaaccccgag
      421 cgaggctgag accgccaaca ggctcgcaag gaacggttcg gccatgaagt agatgagccc
      481 gccgcctact atgaacagag cggtgatgag gccgattcgg atgccgcgcc gggcggtgac
      541 gatggcgcga gggatgcgtt cgagttgctc gatactctct tctccgaccg gcggcattcg
      601 ctggagcacc gccaggtacg ccaggtagat gccaatcaac accgccgcgt cgacaagatc
      661 gagtgaggcc ttggcccaga ccacggtgcc atagcctatg gcggcaagca acccgatgac
      721 ttcgatcgaa tgctcgtcgg cgagccttat gcggcgaagc ggctcgttct ttcgcgagcg
      781 gtgaaacagg gccgcagtga aatagatcat cggccatccc aggccggtga gcagccgcag
      841 cgctccggtg aggttcgcca tcagcagagc cacctgctgt ttccacgcca agaccgcctc
      901 cacagcgaac tcgggcaggg tttgcagcca ggcgagaatc gccagcgcga atccctgagc
      961 aatgaagaac tgcgccgatt cggcggccca ggcgatgagc atagcagcgg ccaggatgga
     1021 cggcgtcgtc cataacaccg aagagggatc gacttcgcga atggttcccg ccgacagcag
     1081 gatcagcgcg cagacgggca cagccgcccg ctggcgccta tcggaaaccg acaccggaat
     1141 ccctgcggac gatggaatgc ttttcaaatt ccgcacgctt caccggaaag tccgtgcgaa
     1201 agtgcgcgcc gcggctctcc tcgcggccaa gcgcgcatcg cgcgatgagc agcgcgacct
     1261 ggcgaaggtt gcgagtttcg gcccgcccgc gggtcagcgg cccggcttca ccgccgtcgt
     1321 cctccagacg cgccacggct tgccgcagtt gatcaccaca gcgcacgata ccgcacagtt
     1381 cccatgcgat ttggcggacc tcgccggcgc tcaccagcgg acgatcgaac cgcggggctt
     1441 ggccagacga gacgagcggc gcggagatcg cctcccgcat ggcacgcccg gcacgcgcgc
     1501 caaacaccac tccttcgagc aaggagttgc tcgccagccg gttagccccg tgaacgccgg
     1561 tacaggctac ttcgccggcg gcgaagagcc cggccag
//
LOCUS       DASQCV010000334         2873 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_736272, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000334 DASQCV010000000
VERSION     DASQCV010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2873
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_736272"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VEQ16_05065"
     CDS             <1..273
                     /locus_tag="VEQ16_05065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019459635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP63234.1"
                     /translation="GVVLNLMGYPASVIAHQVNSTSHPSDFIMGLGKGIVFAGTIALI
                     GCRAGLNASRGAQAVGEAATQAVVGGIVASVVLDGIFAVIFYQLGL"
     gene            289..1020
                     /locus_tag="VEQ16_05070"
     CDS             289..1020
                     /locus_tag="VEQ16_05070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019090967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP63235.1"
                     /translation="MGLISVQNVGQRFGSRTIFRNVSCEIEHSEVFVILGGSGCGKST
                     LMRQMIGLQTPTEGEIFVAGHSVRTNVQAVRRSIGVMFQAGALFGSMNLLDNVALPLS
                     VFTDLPPQARREIAALKLSLVGLADAAQRLPAEISGGMIKRAAIARALVLDPPILFLD
                     EPSAGLDPITSAGLDKLILGLRDSLGATFVVVTHELSSILAIGDRCLMLDADAKGMIA
                     LGRPQDLRDTSTVPKVKAFFNRETL"
     gene            1021..2040
                     /locus_tag="VEQ16_05075"
     CDS             1021..2040
                     /locus_tag="VEQ16_05075"
                     /inference="COORDINATES: protein motif:HMM:NF014523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HYP63236.1"
                     /translation="MDSSQNAFRVGIFVIGGLIALIAVIMFLASAGFNQGQPFETYFR
                     ESVQGLDVGTTVRFHGVAVGQVTDVGLVFAEYPPPNPDSPNLNKAYRQVIVRYRINVA
                     KIGTNWDFNRSIARGLRAQLKSQGITGLSYIELTFVNPAENPVEPVPWTPRSPVIPSI
                     PSTLTQLTDAVQEAVTQIGQANLPHMLDELGDLITTLNQQVSRGDAHQAVNNANKLLE
                     TLNTVVKQSDLPGTSAAIRNLAGGPQTTQIIAQLNQTTAQLAKISAQLPALVAASQST
                     VQQTSELAADMQAQLGPIMQNLTSTTASLRTLSDSLSRNPAQVITGAQPPPPPPLPAQ
                     QGANP"
     gene            2037..2642
                     /locus_tag="VEQ16_05080"
     CDS             2037..2642
                     /locus_tag="VEQ16_05080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013641160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type transport auxiliary lipoprotein family
                     protein"
                     /protein_id="HYP63237.1"
                     /translation="MKRRATLLAPLALTACGSLLPRQKYIPRVNWPLDPAPPAALPSA
                     ATGPVLLVRDLIAAPGFDQQGLQSLQPDGSIDVDFYNLWAASPAQAVTQALITWCQAS
                     GEFSAVVSPGSRLTPNLILEGALTELLADLGTSQGRAVLTLVVIRPSAGLGATALPLA
                     QVRLTGTAPLSGQGAAAQAAAQSTALANVLGQAVALVGRYA"
BASE COUNT          516 a          980 c          871 g          506 t
ORIGIN      
        1 ggggtggtat tgaacctgat gggctaccct gcctctgtca tcgcacacca ggtgaacagc
       61 acctcgcacc cgtccgattt catcatgggg ctcggcaagg gcatcgtgtt cgccggtacc
      121 atcgcgctca tcggctgccg cgccgggctc aacgcctcgc gcggggccca ggccgtgggc
      181 gaggccgcaa cccaggcggt ggtgggcggc atcgtcgcct ccgtcgttct ggacggtatt
      241 tttgcagtca ttttctatca actcggcttg tgacgcatag gttgatttat gggtctgatt
      301 tccgttcaga atgtgggaca gcgtttcggc agccggacga ttttccggaa tgtgagctgc
      361 gaaatcgagc atagcgaggt attcgtcatc ctcggcggct cgggctgcgg caaatccacg
      421 ctgatgcggc agatgatcgg gctgcagacg cccaccgaag gcgagatttt cgttgccggc
      481 cattccgtgc gcacgaatgt gcaggcggtg cggcgcagca tcggcgtgat gttccaggcc
      541 ggcgccctgt tcggctccat gaacctgctg gacaatgtcg cgctgccgct ctccgtgttc
      601 accgacttgc cgccccaggc ccggcgtgaa atcgccgcgc tcaagctatc actggtgggc
      661 ctggccgacg cggcgcagcg cctgccggcg gaaatttccg gcggtatgat caagcgcgcc
      721 gccatcgccc gtgccctggt gctcgacccg cccatattat ttctcgacga gccctcggcc
      781 gggctggacc ccatcacctc ggcggggctg gacaagctga tcctcggcct gcgcgattca
      841 ctcggcgcca ccttcgtggt ggtgacgcat gagctctcct ccatcctcgc catcggcgac
      901 cgctgcctca tgctcgatgc cgatgcgaaa ggcatgatcg cgctcggccg gccgcaagat
      961 ctgcgtgata caagcaccgt gccaaaggtg aaggcctttt tcaatcggga gacgttatag
     1021 atggactcct cgcaaaatgc attccgcgtc gggattttcg tcattggcgg gctcatcgcc
     1081 cttatcgcgg tgatcatgtt cctggccagc gccgggttca accagggcca gccatttgag
     1141 acctatttcc gggaatccgt gcaggggctg gatgtcggca ccaccgtgag attccatggc
     1201 gtcgccgtcg gccaggtcac ggatgtgggg ctggtcttcg cggaatatcc accgccaaat
     1261 ccagacagcc ccaatctcaa caaggcctat cggcaggtga tcgtgcgcta ccggatcaac
     1321 gtggccaaga tcggcaccaa ctgggatttc aaccgctcca tcgcgcgcgg gctacgcgcg
     1381 cagctcaagt cgcagggcat taccgggtta tcctatatcg agctcacttt cgtgaacccc
     1441 gctgaaaacc ctgtggaacc ggtgccctgg acaccgcgaa gtccggtgat cccctccata
     1501 ccgagcacgc ttacccagct gaccgatgcg gtgcaggaag ccgtcacaca gatcggccag
     1561 gctaatctgc cgcacatgct cgatgagctc ggcgacctga tcacgacgct gaatcagcag
     1621 gtctcgcggg gcgatgctca tcaggcggtg aacaatgcca ataagctgct ggagacgctc
     1681 aataccgtgg tgaagcagag cgacctgccg ggcacctcgg ccgccatacg caacctcgcc
     1741 ggcgggcctc agacgacaca gatcattgct cagctcaatc agaccacggc acagctggcc
     1801 aagatctcgg cgcaattgcc ggcgctcgtg gcggcaagcc agagcaccgt gcaacagacc
     1861 agcgaactgg ccgccgacat gcaggcgcag ctcggcccaa tcatgcagaa tctgacgagt
     1921 acaacagcca gtttgcgcac actctcggat tcgctgtcgc gcaacccggc gcaggtgatc
     1981 accggcgccc aaccgccgcc cccgccgccg ctgccagcgc aacaaggagc caacccatga
     2041 aacgccgcgc aaccctcctg gcaccgctgg cgctcaccgc ctgcggctcg ctgctgccac
     2101 ggcagaaata tatcccacgc gtcaactggc cgcttgaccc agctccacca gccgccctgc
     2161 cctccgccgc caccgggccg gtgctgctgg tgcgcgacct gatcgcagcc cccggcttcg
     2221 accagcaggg gctgcagagc ctgcagccag atggcagcat agacgtggac ttttataacc
     2281 tatgggcagc atctccggcg caggcggtca cccaggcgct catcacctgg tgccaggcga
     2341 gcggcgaatt ttctgccgtg gtctcgcccg gcagccgcct gacgccaaat ctgatcctgg
     2401 aaggcgcgct aaccgaattg ctggcggatc tggggactag ccagggacgc gcggtgctca
     2461 ccttggtcgt tatcaggccc agcgcgggcc tgggtgccac ggcgctgcca ctggcgcagg
     2521 tacgcctcac cggcacggcg ccgctgtccg gccaaggcgc cgcagcacaa gcagccgccc
     2581 agagcaccgc cctggccaat gtgctcggcc aggcggtggc actggtgggc cgctacgctt
     2641 gaagatggcg tcaccctcgc cacatgcggc aggctgacca cgcccaagga gccacccatg
     2701 acgaagatcc tgctgatcgc gaccgcccat gcccggctcg gcagcacggg cgagcccacc
     2761 ggcttatggt tcgaggagct gaccacccct tattacgcct tcattgacgc gggggcagcg
     2821 gtcgatatcg ccacgctgcc tggcggcaag gtgcccatcg acccgcgctc gct
//
LOCUS       DASQCV010000335         2041 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2561135, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000335 DASQCV010000000
VERSION     DASQCV010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2561135"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..457)
                     /locus_tag="VEQ16_05085"
     CDS             complement(<1..457)
                     /locus_tag="VEQ16_05085"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HYP63238.1"
                     /translation="MNEAELRARLPEGLAHRQESLEGHRAAAVLVALEPGFGVWLTRR
                     SPRMLHHAGQVAFPGGKLDPGDASAEAAALREAWEEIGLDPASVEILGRLDEHITGTG
                     FHMTPVVALVPPGVEVRIASDEVVDVFCLPFETLLDPSLPYTRQACAEGV"
     gene            complement(476..1009)
                     /locus_tag="VEQ16_05090"
     CDS             complement(476..1009)
                     /locus_tag="VEQ16_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1285 domain-containing protein"
                     /protein_id="HYP63239.1"
                     /translation="MTAPVRRVAECGNLPFLIKRDGTWLYKGSPITRKAMVCLFSTIL
                     QRDEEGRYLLETPAERGWIEVEDAPFLAVELDWKGQGKGQVLCFRTNVDKCVVAGPEH
                     PIRISHNLLSCEPAPYLQVCDGKGKYPIEARINRATYYELVALAEPGIVRGRKVLGVW
                     SDGAFFPLGDLPGGCGS"
     gene            complement(1104..1346)
                     /locus_tag="VEQ16_05095"
     CDS             complement(1104..1346)
                     /locus_tag="VEQ16_05095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63240.1"
                     /translation="MVGSKPNSSVPPVERAGTAAAALRAVTRIQAAGGFLFLLLQPED
                     GGCVTGSIGRNAVTGQWAKQKEQGGFCHADEELCTV"
     gene            1333..>2041
                     /locus_tag="VEQ16_05100"
     CDS             1333..>2041
                     /locus_tag="VEQ16_05100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019015557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase"
                     /protein_id="HYP63241.1"
                     /translation="MLPTNISDPGFFHKVVDCQYACPAHTPVPEYIRLIAAGRYADAY
                     MLNWQSNVFPGILGRVCDRPCEPACRRGRVEEQPVAICRLKRVAADYKDDISSRLPKP
                     ASLKNGKRIALIGAGPASLTVARDLAPLGYDITLFDDNKAGGGMMRTQIPKFRLPDTV
                     LDEECGYIENLGISLRYGERVNSLKSLLNDGYDAVFVGTGAPRGRDLDIPGRQEAAAN
                     IHLGIDWLSSISFGHINS"
BASE COUNT          397 a          755 c          521 g          368 t
ORIGIN      
        1 caaccccttc cgcgcaggcc tgccgcgtat atggcaaaga cgggtccagc agcgtctcga
       61 acggcaggca gaacacatcc accacctcat cggaagcgat ccgcacctcc acccccggcg
      121 gcaccagggc gaccacgggc gtcatgtgaa accccgtccc cgtgatatgt tcgtcgagcc
      181 gcccaagaat ctcaacgctg gccggatcaa gcccgatctc ctcccatgcc tcgcgcaaag
      241 ccgccgcctc cgccgaggca tcgccaggat cgagcttgcc gcctggaaac gccacctgcc
      301 cggcatgatg cagcattctc gggctgcgcc ttgtcagcca cacgccgaac ccaggctcca
      361 gggccaccag cacagcggcg gccctgtgac cctccagcga ttcctgacga tgcgccaaac
      421 cttccggcag ccgcgcgcgc aattccgcct cgttcatgcc gccctgccgc tgcaactagc
      481 tgccgcagcc tcccggcaaa tcgcccaggg ggaagaaagc gccgtcgctc cacacgccca
      541 gcaccttgcg tccgcggaca atcccaggct cggccagcgc caccagttcg taataggtcg
      601 cgcggttgat ccgcgcctca atcggatatt tgcctttgcc atcacacacc tgaagataag
      661 gcgccggctc gcagctcagc aaattatggg aaatgcggat cgggtgttcc ggccccgcca
      721 caacgcattt gtccacattc gtgcgaaaac acaggacttg gcccttgcct tgccccttcc
      781 aatccagctc cacagccagg aagggcgcat cctcaacctc gatccagccg cgctctgccg
      841 gcgtctccag cagatagcgc ccctcttcgt cacgctgcag aatggtcgaa aagaggcaca
      901 ccatcgcctt gcgcgtgatc ggactgcctt tgtacagcca cgtcccgtca cgtttgatga
      961 gaaacggcaa attgccgcac tcggccacac ggcgcactgg ggcggtcatc acaggatcct
     1021 ggtcccccct ttcagtcacc tctcgccttc cttatcgtca aatcagcaat gtcatgcgca
     1081 tataggtaac cgcgcaaggg taatcaaact gtacataatt cctcatccgc atggcagaag
     1141 ccgccttgtt ccttttgttt cgcccattgc ccggtcacgg cgtttctgcc tatgctccct
     1201 gtcacgcagc cgccgtcctc gggctgcaac aataaaaaaa gaaacccgcc agcagcttga
     1261 atacgggtaa ctgcacgcaa cgcagctgcc gccgttccag cccgctcgac gggcggcacg
     1321 gaggaatttg gtttgctgcc caccaatatc agcgatcctg gctttttcca taaagtcgtc
     1381 gattgccagt atgcctgtcc ggcccacacg ccggtgcccg agtatatccg cctcatcgcc
     1441 gccggccgct atgccgacgc ctatatgctc aactggcaat ccaacgtttt tcccggcatt
     1501 ctcggccgcg tctgcgaccg accctgcgag cccgcctgcc gccgcggccg ggtcgaggaa
     1561 cagcccgtcg ccatttgccg cctcaagcgc gtcgccgccg actataagga cgatatttcg
     1621 tcccgcctgc ccaaacccgc ctcgttgaaa aacggcaagc gcatcgccct tatcggcgcc
     1681 ggccccgcct ccctcaccgt cgcgcgtgac ctcgccccgc tcggctacga catcacgctt
     1741 ttcgacgaca acaaggccgg cggcgggatg atgcgcacgc aaatccctaa attccgcctg
     1801 ccggatacgg tgctggacga ggaatgcggc tatatcgaaa atctcggcat ttcgctccgc
     1861 tatggcgagc gcgtgaacag cctgaaatcc ctgctgaatg acggctacga cgccgtcttc
     1921 gtcggcacag gcgccccgcg cggccgcgac ctcgacattc ccggccgcca ggaagccgcc
     1981 gccaacattc atttgggcat cgactggctt tcctccatct ccttcggcca catcaacagc
     2041 a
//
LOCUS       DASQCV010000336         5195 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3223695, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000336 DASQCV010000000
VERSION     DASQCV010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5195
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3223695"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..586)
                     /locus_tag="VEQ16_05105"
     CDS             complement(<1..586)
                     /locus_tag="VEQ16_05105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HYP63242.1"
                     /translation="MPDQPKAFYRNRWVLAGLVIIIAIAGYVGWLKFANHGLPEGIAA
                     GNGRLEATEIDIAAKTPGRIRDIFVRDGDFVTAGQVLARMDTDQLEAQRRQSMAEQQR
                     ALISVGTAKSVVTQREAEVTAAEAVVRQRKAELTAADSRYARAERLVRTNAISQQTLE
                     DERASAHGARATLNAAEAQAAAATAAANAAQAQVV"
     gene            complement(797..1294)
                     /gene="ssb"
                     /locus_tag="VEQ16_05110"
     CDS             complement(797..1294)
                     /gene="ssb"
                     /locus_tag="VEQ16_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016737891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HYP63243.1"
                     /translation="MAGSVNKVILVGNLGKDPEVRNAQSGMKIVNLTLATSDTWNDKM
                     SGERKEQTEWHRVVIMNDRLGEVAEKYLRKGSKVYLEGKLQTRKWTDQSGQERYTTEV
                     LLGRFGGELVLLDRAGGGAGMGGGDEYAPRAANPAPARAAAPARAVGGWDTRPGNDLD
                     DEIPF"
     gene            1438..4296
                     /gene="uvrA"
                     /locus_tag="VEQ16_05115"
     CDS             1438..4296
                     /gene="uvrA"
                     /locus_tag="VEQ16_05115"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HYP63244.1"
                     /translation="MVEQKGAGFITVRGAREHNLKNIDIQIPREQLTVITGLSGSGKS
                     SLAFDTIYAEGQRRYVESLSAYARQFLELMGKPDVDSIEGLSPAISIEQKTTSKNPRS
                     TVGTVTEIHDYMRLLWARAGVPYSPATGLPIEAQTVSQMVDRVLTMKEGTRLLLLAPV
                     VRDRKGEYKKELAELQRKGFTRAKVDGKIYEISEVPALNKKLKHEIEAVVDRIIVKQG
                     IEQRLADSFETALHLADGIVYAEDADSGERTVFSSRFACPVSGFTIEEIEPRLFSFNS
                     PHGACPVCDGLGHEIFFDPHLVVPDEQRALDNNAIAPWSGAMSPFYDQTLTSLAKHLK
                     IKMTTPWEKLPEEARDKILYGTKEEVTMTYKDSARAYSVTKPFEGVIKNLERRYKETD
                     SVWTREELSRYHAERPCAACQGARLKPEALAVKVASKNLAEIAELSIDGAKEWFDGVA
                     ETLTPQRLEIARRILREIHDRLQFLLDVGLNYLTLARGSATLSGGESQRIRLASQIGS
                     GLTGVLYVLDEPSIGLHQRDNERLLGTLNRLKNLGNTVLVVEHDEDAIRAADHLIDMG
                     PGAGINGGHVVAEGTPAEVANAKNSITGDYLSGRRAIPISLRRPVQQERVLKLIGATG
                     NNLKNVTAEFPLGLFTCITGVSGGGKSTLIVETLYKAISRRLMGSGEVPAPFEKIEGL
                     EQLDKIIDIDQSPIGRTPRSNPATYTDLFAPIRDWFSEMPESRARGYKPGRFSFNVKG
                     GRCEACQGDGVLKIEMHFLPDVFVTCDTCKGKRYNRETLEVKFRGKSIADVLDMSVDE
                     AQVFFAAVPKIHDRLALLARVGLGYIKLGQQATTLSGGEAQRIKLAKELARRATGRTL
                     YILDEPTTGLHFEDIRKLLEVLHALVDAGNSIIVIEHNLEVIKTADHIIDIGPEGGAG
                     GGRIIATGTPEDIAAALGSYTGQFLKPLLAPKRAKKRA"
     gene            4376..5092
                     /locus_tag="VEQ16_05120"
     CDS             4376..5092
                     /locus_tag="VEQ16_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipo-like protein"
                     /protein_id="HYP63245.1"
                     /translation="MNHLLRAVGTLIARFLTQQVPVEPALPVDITALTHLLHKGDIIL
                     VEGHLRISSAVKYLTQSTWSHAVLYIGHSTCIEADLLEGVRRFKLADLAPFRIRICRP
                     ISLTPEDADIIIAHATARLGVQYDLKHVFDLARYLVPLPVPRSWRRRAIALGSGDPTR
                     AICSTLVAESFQTAGYPVLPEIPPPPHDPATGRSAKEIYHIHDTGLFTPRDFDLSPFF
                     HVIKPEMPRPFNHHNLIWVP"
BASE COUNT          991 a         1895 c         1389 g          920 t
ORIGIN      
        1 ccaccacctg cgcctgggcg gcattggcgg cggcggtggc ggcggcggct tgcgcctccg
       61 ctgcgtttaa ggtggcgcgg gcgccatggg cgctggcccg ctcatcctcc agcgtctgct
      121 gcgagatggc attggtcctc accagccgct cggccctggc atagcgtgaa tccgccgccg
      181 tcagctccgc cttgcgctgg cgcaccacgg cttccgccgc tgtcacctcg gcctcgcgct
      241 gggtgacgac actcttggcc gtgcccacgc tgatgagcgc gcgctgctgc tcggccatgg
      301 actggcggcg ctgcgcctcc agctggtccg tatccatgcg tgccagcacc tgcccggccg
      361 tgacaaaatc accatccctg acgaagatgt ccctgatgcg tcccggcgtc ttggcggcga
      421 tgtcgatctc cgtcgcctca agccgcccat tgccagcggc aatgccctcg ggcagcccgt
      481 gattggcgaa tttcagccag cccacatagc cggcgatggc gataatgatg acgaggcccg
      541 caaggaccca gcgattccgg taaaaagctt tcggctgatc aggcacgtta atgcgcccct
      601 ctgtctgtga agcctatgat acgcggtcca aacaggaaat aagcggcgag agagccgttt
      661 caacccgcat tggtccgggt ccggcatcag atcagccgcg agttgcagct gctgtccggt
      721 tttcaaaagt gccagcacca aaagaaaaga gccgcctcac ggcggctcct ggcttcagcc
      781 tctgcggaga ggttttttaa aacgggattt catcatccaa atcattgccc ggccgcgtat
      841 cccagccgcc cacggcccgg gccggcgccg ccgcccgcgc gggcgccggg ttcgccgccc
      901 gcggcgcata ttcgtcgcca ccgcccatgc cggcccctcc gccagcccga tccagcagca
      961 ccagctcacc gccgaagcgt cccagcagca cttccgtggt gtagcgctcc tgcccgctct
     1021 ggtcggtcca tttgcgcgtc tgcagcttgc cctccagata cactttcgag cccttgcgca
     1081 gatatttctc cgccacctcg cccagccggt cattcatgat gacgacgcgg tgccactcgg
     1141 tctgctcctt gcgctcgccg ctcatcttgt cgttccatgt atcggaggtg gcgagcgtca
     1201 gattcacgat cttcataccc gattgcgcgt tgcgcacttc cgggtccttg cccagattgc
     1261 ccaccagaat caccttgttc acactaccag ccatctcggg ctcctcaacc tgcgattgtc
     1321 tatcaagctt aacgcatctg ccatgaagaa actagcgcac aatgtttgct ttatgccgca
     1381 acaccccata tcctacaaga acattaagcg aacatagcac ggtaccttgg ggcagacatg
     1441 gttgaacaga agggcgcggg gttcatcact gtccgcggcg cgcgggagca taacctcaaa
     1501 aatatcgaca tccagattcc ccgtgagcag ctcacggtca tcaccggcct gtccggctcg
     1561 ggcaagtcgt cgctggcgtt cgacaccatc tatgccgagg gccagcgccg ctatgtcgag
     1621 tcgctctcgg cttatgcgcg gcaattcctg gagctgatgg gcaagcccga cgtggattcc
     1681 atcgagggtc tctcgccggc catctccatc gagcagaaga cgaccagtaa aaacccccgc
     1741 tccaccgtcg gcacggtgac ggaaatccac gattatatgc gcctgctctg ggcgagggca
     1801 ggggtgccgt actcgcccgc caccggcctg cccatcgagg cgcagacggt gagccagatg
     1861 gtcgatcgcg tcctcaccat gaaggaaggc acgcgcctgc tcctgctcgc ccccgtggtg
     1921 cgcgaccgca agggcgagta caagaaagaa ctcgccgaac tccagcgaaa gggtttcacc
     1981 cgcgccaagg tggacggcaa gatctacgaa atcagcgaag tcccggcgct gaacaaaaag
     2041 ctcaagcacg agatcgaagc ggtggtcgac cgcattatcg tcaagcaagg catcgagcag
     2101 cgcctcgccg attcattcga gaccgccctg catctcgccg acggcatcgt ctatgccgag
     2161 gatgcggata gcggcgagcg caccgtcttc tcctcccgct tcgcctgccc ggtttccggc
     2221 ttcaccatcg aggaaatcga gccccgcctc ttctccttca actccccgca cggcgcctgc
     2281 ccggtctgcg acgggctcgg ccacgaaatc ttcttcgatc cgcatctcgt cgtccccgac
     2341 gagcagcgcg cgctcgacaa taacgcgatt gccccctggt ccggcgccat gtcccccttc
     2401 tacgaccaga cgctcacctc cctggccaag catctcaaaa tcaaaatgac caccccctgg
     2461 gaaaaactcc ccgaggaggc gcgggataaa atcctgtacg gcacgaagga agaggtcact
     2521 atgacctaca aggattccgc ccgtgcctac agcgtcacca aaccctttga aggtgtcatc
     2581 aaaaacctcg aacgccgcta caaggaaacc gactccgtct ggacccgcga agaactttcc
     2641 cgctatcacg ccgagcgccc ctgcgccgcc tgccaaggcg cgcgtctgaa acccgaggcg
     2701 ctcgcggtga aggtcgccag caaaaacctc gccgagattg ccgagctctc catcgacggc
     2761 gccaaggaat ggttcgacgg cgtggcggaa actctcaccc cgcagcgcct ggaaatcgcg
     2821 cgtagaatcc tgcgtgaaat ccacgaccgc ctgcaattcc tgctcgatgt cggcctcaac
     2881 tacctcacgc tcgcccgcgg ctccgccacc ctctccggcg gcgaaagcca gcgcatccgc
     2941 ctcgccagcc aaatcggctc cggcctcaca ggtgttttat acgtgctgga cgagccctcc
     3001 atcggcctgc accagcgcga caatgagcgt ctgctcggca cgctcaaccg gctgaaaaat
     3061 ctcggcaaca ccgtgctcgt ggtggagcat gacgaagacg ccatccgcgc cgccgaccat
     3121 ctcatcgaca tgggccccgg cgccggcatc aatggcggcc atgtcgtcgc cgagggcacg
     3181 ccggccgaag ttgccaacgc caagaactcc atcaccggcg attatctctc cggccgccgc
     3241 gccatcccca tctcgctccg ccgccccgtg cagcaggagc gcgtgctgaa actcatcggt
     3301 gccaccggca ataacctcaa aaacgtcacg gccgaattcc ccctcggcct gttcacctgc
     3361 atcaccggcg tctccggcgg cggcaaatcc accctcattg tcgaaacgct ctacaaggcc
     3421 atctcccgcc gcctcatggg ctcgggcgaa gtcccggccc ccttcgagaa aatcgaaggt
     3481 ctggagcagc tggacaagat catcgacatc gaccagtccc ccatcggccg taccccacgc
     3541 tccaaccccg ccacctacac ggatctgttc gcccccatcc gcgactggtt ttcggaaatg
     3601 cccgaatccc gcgctcgcgg ctacaagccc ggccgcttct ccttcaacgt caaaggcggg
     3661 cgctgcgaag cctgccaggg cgatggcgtg ctgaagatcg agatgcattt cctcccggac
     3721 gtcttcgtca cctgcgatac ctgcaaaggc aagcgctata accgcgaaac tctggaagtg
     3781 aaattccgcg gcaaatccat cgccgacgtg ctcgacatgt ccgtcgacga agcccaggtg
     3841 tttttcgccg ccgtgccgaa aatccacgac cgcctcgcgc tgctcgcgcg cgtcggcttg
     3901 ggctacataa aactcggcca gcaggccacc acgctttcgg gtggcgaggc gcagcggata
     3961 aaactggcca aggagctggc ccgccgcgcc actggccgca cgctctatat cctcgacgag
     4021 cccaccaccg gcctgcattt cgaagatatc aggaaactcc tggaagtcct gcatgcgctg
     4081 gtagatgccg gcaactccat catcgtcatc gagcacaacc tcgaagtcat caaaaccgca
     4141 gaccacatca tagatatcgg cccggaaggc ggggcagggg gcgggcgcat catcgccacc
     4201 ggcacaccgg aagacatcgc cgcggcgctg ggcagctata cgggccagtt cctcaagccg
     4261 ctgctggcgc ccaagcgcgc gaagaagcgg gcatgaagag ccttcttttt ttgaaaaaaa
     4321 agaagcaaaa aaacttttgc tcctgggggc atgggcgttg gcccggccaa cgcctatgaa
     4381 tcacctcctc cgcgccgtcg gcaccctcat cgcccgcttc ctcacccagc aagtgcctgt
     4441 cgagcccgcc ttgcccgtcg acatcacagc gctcacccac ctgctgcata aaggcgatat
     4501 catcctcgtc gagggtcatc tccgcatctc ctcggccgtc aaatatctca cccagtccac
     4561 ttggtcgcac gccgtcctct acatcggcca cagcacctgc atcgaagccg accttctgga
     4621 aggcgtgcgc cgcttcaagc tggccgatct cgccccgttc cgcatccgca tctgccggcc
     4681 catcagtctt acgccggagg acgcggacat catcatcgct cacgccaccg cgcgcctcgg
     4741 cgtgcaatac gacctgaaac atgtcttcga cctcgcgcgc tatctcgttc ctctacccgt
     4801 gccgcgcagc tggcgccgcc gcgccatcgc cctgggctca ggcgatccca cccgcgccat
     4861 ctgctccacc ctggtcgccg aatccttcca gaccgcgggc tatcccgtgc tgcccgaaat
     4921 cccgcccccg ccgcacgacc ccgccactgg acgttccgcc aaggaaatat accacatcca
     4981 cgacactggc ctcttcacgc cgcgcgattt cgacctttcg ccctttttcc acgtgatcaa
     5041 gcccgagatg ccgcggccct tcaaccatca caacctcatc tgggtaccat gagggccctg
     5101 ctgcttctgc tcctgctgct ctccgcctgt gccaccccca cgccgtcgtc cgtgccgcgc
     5161 ggtcccatcg ccatcgctgt cgccaagcgc ggctg
//
LOCUS       DASQCV010000337         2827 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_404761, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000337 DASQCV010000000
VERSION     DASQCV010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2827)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2827)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2827
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404761"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2827
                     /locus_tag="VEQ16_05125"
     CDS             <1..>2827
                     /locus_tag="VEQ16_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003622771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP63246.1"
                     /translation="TAPLEVQFGQMPGLNQMSSSSSGGASVITLQFSLAVSLDVAEQE
                     VQAAINAAGNLLPSDLPAPPIYAKVNPADAPVMTLAITSKTMNLTDVQSIANSRLASK
                     LSEIPGVGLVTVSGGNVPAIRVEVNPQALASYGISIDNIRTDIGNLNVNSPKGSFSGP
                     TQTYTINSNDQITEAEEYNHAIVAYKNGTPVYLGDVARVIAAPENAELGAWANRTPAI
                     VLNIQRQPGANVIATVNAIKRALPVLTTGLPAALDVAVMSDGTTSIRASVNDAELDLT
                     VSVALVVLVIFLFLRSMRATIIPSITVPVSLIGALSFMYLAGFSLDNLSLMALIIATG
                     FVVDDSIVMIENISRYVEMGEPPLQAALKGAGQMGFTIISLTASLIAVLIPLLFMGDV
                     VGRLFSEFAITLACTIVISAIVSLTLVPMLCSRLLKPKEEEHPNRIQLWAETQFNRLI
                     AFYARGLDWVLAHVRFTLGVALCGLVLTILLYVFIPKWFFPVQDTGQIQGMSQGAQST
                     SYASMALHQQALADAILKDPDVVSLTSSIGIDGTNTTLNQGRFLINLKPKNQRSLSAA
                     RIIPRLNREVAGVPGITLFLQPVQSLTLNTTVSPTQYQFVLEDPNSSDFTTYVPRLMA
                     KLQALPQLTDVASGLQASGQAVFIDIDRTNAARYGITAATVDSALYDAFGQRIISTIF
                     TQTDQYRVIMGTNGEQMNSVAALGKIYLPSSSGTGGQVPLSAIANISVEQKPLVIEHL
                     GQFPATTISFNLAPGYSLGQAVNAIEAAEKEVNFPASMQTNFLGAAASFQSSLSNEVF
                     LLLAAIVTVYIVLGVLYESFVHPVTILSTLPSAAIGALFFLWLSGEGLGVIGIIGIVL
                     LIGIVKKNAIMMIDFALQAERGEGKESRAAIREAALLRFRPILMTTLAAMFSGLPLIF
                     GGGMGSELRQPLGIAIVGGLMVSQVLTL"
BASE COUNT          488 a          923 c          830 g          586 t
ORIGIN      
        1 acggcgccgc tggaggtgca gttcgggcag atgccggggc tcaaccagat gtcctcgtcg
       61 agctccggcg gcgcgtcggt gatcacgctg caattcagcc tggcggtgag cctcgatgtg
      121 gcggagcagg aggtgcaggc cgcgatcaac gctgccggga acctcttgcc ctccgatctt
      181 cctgcgccgc cgatctacgc caaggtgaat ccggccgatg caccggtgat gacactggcc
      241 atcacgtcga agacgatgaa tctcacggat gtgcagagca tcgccaattc gcgcctggcc
      301 tcgaagcttt cggaaattcc tggcgttggc ctcgtgacgg tgagcggcgg caatgtgccg
      361 gccatccgcg tggaggtgaa tccgcaggcg ctcgcctcat acggtatctc catcgataat
      421 atccgcaccg atatcggcaa tctcaacgtc aattcgccga agggcagctt ttccgggccg
      481 acccagacct atacgatcaa cagcaacgac cagatcaccg aggcggagga atataaccac
      541 gcgatcgtcg cctataagaa tggcacgccg gtctatctcg gcgatgtggc gcgcgtgatt
      601 gcagcacccg agaatgccga gctcggcgcc tgggccaacc gcacgccagc catcgtgctc
      661 aacattcagc gtcagccggg cgcgaatgtc atcgccacgg tgaatgccat caagcgcgcc
      721 ttgccggtgc tcaccacagg cctgcctgcc gcgctggacg tggcggtgat gagcgacggc
      781 accacctcca tccgtgcctc ggtgaacgat gccgagctgg atttgaccgt gagcgtggcg
      841 ctcgtcgtgc tggtcatctt cctgttcctg cgctccatgc gcgccaccat catcccctcc
      901 atcaccgtgc cggtctcgct catcggcgcg ctctccttca tgtatctggc cggcttctcg
      961 ctcgataatc tctcgctgat ggcgctcatc atcgccaccg gcttcgtggt cgatgattcc
     1021 atcgtgatga tcgagaatat ctcgcgctat gtggagatgg gcgagccgcc gctgcaggcg
     1081 gcgctcaaag gcgcgggaca gatgggtttc accatcatct cgctcaccgc ctcgctcatc
     1141 gccgtgctca tcccgctgct tttcatgggc gatgtggtgg ggcggctctt ctccgaattc
     1201 gccatcacgc tggcctgcac catcgtcatc tcggccatcg tctcgctcac tttggtgccg
     1261 atgctgtgct cgcgcctgct caagcccaag gaggaggagc atcccaaccg catccagctt
     1321 tgggccgaaa cgcaattcaa ccggctgatc gcattttacg cgcgtgggct ggactgggta
     1381 ctcgcgcatg tgcgcttcac gctcggcgtg gcgctgtgcg ggctggtgct gaccatcctg
     1441 ctttatgttt ttatcccgaa atggtttttc ccagtgcagg atacggggca gatccagggc
     1501 atgagccagg gcgcgcagag cacctcctac gccagcatgg cgctgcacca gcaggcgctg
     1561 gccgatgcca tcttgaaaga tcccgacgtc gtcagcctca cctccagcat cggcatagat
     1621 ggcaccaaca cgacgctgaa ccagggccgc ttcctcatca atctcaagcc taagaatcag
     1681 cgcagcctgt ccgcggcgcg gatcatcccg cgtctcaacc gcgaagtggc aggcgtgccg
     1741 ggcatcacgc tcttcctgca gccggtgcag agcctgacgc tcaacaccac cgtttcgcca
     1801 acgcaatacc agtttgtgct ggaggacccg aattcctcgg atttcaccac ctatgtgccg
     1861 cgactgatgg cgaaattgca ggctctgccg cagctcaccg acgtggcgag cgggctgcag
     1921 gcgagcgggc aggccgtctt tatcgatatc gaccgcacca acgcggcgcg ctacggcatc
     1981 accgcggcga cggtggattc cgctctgtac gacgcgttcg gccagcgcat catctccacc
     2041 atcttcaccc agacggacca gtatcgtgtc atcatgggca ccaatggcga gcagatgaat
     2101 tccgtcgcgg ctctgggcaa aatctatctg ccctcctcct cgggcacggg cgggcaggtg
     2161 ccactttcgg ccattgccaa tatttccgtc gagcagaaac cgctggtcat cgagcatctc
     2221 ggccagtttc ctgccaccac catctccttc aacctggcac ctggttattc gctgggccag
     2281 gcggtgaatg cgattgaggc ggcggagaag gaagtgaatt tccctgcctc gatgcagacc
     2341 aatttcctcg gcgccgccgc ctcgttccaa agttcgctct ccaacgaagt gttcctgctg
     2401 cttgccgcta tcgtcacggt ctatatcgtg ctcggcgtgc tctatgagag tttcgtccat
     2461 ccggtaacga tcctctccac tttgccttcg gccgctatcg gcgcgctgtt cttcctctgg
     2521 ctctcgggtg aggggctggg ggtcatcggc attatcggca tcgtgctgct gatcggcatc
     2581 gtgaagaaga acgcgatcat gatgatcgat ttcgcgctgc aggccgagcg cggcgagggt
     2641 aaggagtccc gcgcggcgat ccgcgaggcg gccctgctgc gcttccggcc gattttgatg
     2701 accacgctcg ccgccatgtt ctccggcctg ccgctgatct tcggcggcgg catgggctcg
     2761 gaattgcgtc agccgcttgg tatcgccatt gtcggggggc tcatggtgag ccaggtgctc
     2821 accctct
//
LOCUS       DASQCV010000338         1520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1732921, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000338 DASQCV010000000
VERSION     DASQCV010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1732921"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..708)
                     /locus_tag="VEQ16_05130"
     CDS             complement(<1..708)
                     /locus_tag="VEQ16_05130"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYP63247.1"
                     /translation="MPDDLSGTVGMEEGLNAATQSVGVGLREVRERLGWRLDDVAENL
                     RIKSEFLAAIEAGNLQALPGPAYRAGFVRSYARALGLDPDEILRRFRAAGELQDAAKT
                     ETRFITNVPDSGVPKGAAVMVGVLLLIAGYGLWFHYSGTQRHLADQVPAVPAELAPLA
                     TPPKIEVAPVTPAPSPAPAPAAPAAAAPAAQTPVVQTPAGAANPAAPAGAVSGATPAA
                     PPPSDTAATAPATPPPGA"
     gene            complement(735..>1520)
                     /locus_tag="VEQ16_05135"
     CDS             complement(735..>1520)
                     /locus_tag="VEQ16_05135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative PEP-binding protein"
                     /protein_id="HYP63248.1"
                     /translation="QAAEYGRVLDRANGKRVQFRTLDLGADKLLPGEAASAEENPAMG
                     WRSLRIALDRPAILRRQLRALLLGAQGRKLAVMFPMVATVEEFRAARDLLEAEAARIR
                     PAPEELEAGTMLEVPALLFQLPGLLAEADFISVGTNDLMQFLFAADRGTPELAERYDT
                     LSAPVLELLEKLVTVCQEAGVSLSLCGEAAGRPLDALAFAALGITCLSMSGNAILPVK
                     SVLVEADLNALRPVLRELRRAGAAGGSIREPLAAWAREHNLAI"
BASE COUNT          251 a          543 c          511 g          215 t
ORIGIN      
        1 ggcgccgggc ggaggcgtgg cgggcgccgt ggcggcggtg tcggacggcg gcggggctgc
       61 gggtgtcgct ccagaaaccg cgccggcagg cgcggccggg ttcgccgcac cggcaggtgt
      121 ctgcacgacg ggcgtctgcg cggccggcgc ggcggcggcc ggcgcagcgg gcgccggggc
      181 aggggatggc gccggggtga cgggcgccac ctcgatcttg ggcggggtgg cgagcggggc
      241 aagctccgct ggcacggccg gcacctgatc ggccagatgg cgttgggtgc cggaataatg
      301 aaaccacagc ccgtaccccg cgatgagcag cagcaccccc accatcacgg ccgcgccctt
      361 aggcacgccg ctatccggca cgttggtgat gaagcgcgtc tcggtcttgg ctgcgtcctg
      421 tagctcgccc gcggcgcgga agcggcgcag gatttcgtcc ggatccagcc ccaaggcgcg
      481 ggcataagag cgcacgaagc cagcgcgata ggccggccca ggcaaagcct gcaaattccc
      541 cgcctcgatg gccgccagaa attcggactt gattcgcaaa ttctccgcca catcgtccaa
      601 gcgccagccc aaacgctcgc gcacttcgcg caagccgact cccacggatt gcgtcgccgc
      661 gttcagccct tcttccattc ctacggtccc gctcagatca tccggcattt tgtcagcctt
      721 ctatacctgt ggcttcatat cgccaaatta tgctcgcgcg cccaggcggc caaaggctcg
      781 cgtatgctgc cccccgcagc accggcgcgg cgcagctcgc gcagcaccgg gcgcagcgcg
      841 ttgaggtccg cttccaccag tacggatttc accggtagaa tcgcattgcc ggacattgag
      901 aggcaggtga tgccgagcgc cgcgaaggcc aaagcgtcca gcggccgccc cgccgcctcg
      961 ccgcatagcg aaagcgacac acccgcctcc tggcacaccg tcaccagctt ctccagcagc
     1021 tccagcacgg gcgcggagag cgtgtcatag cgttccgcca gctccggcgt gccgcgatcg
     1081 gccgcgaaca aaaactgcat gaggtcattg gtgccgacgg aaataaaatc cgcctcggcc
     1141 agcaggcccg gaagctggaa cagcagggca ggcacctcca gcatggtgcc ggcctccagc
     1201 tcctccggcg ccgggcggat gcgcgcggct tcggcttcca gcagatcgcg cgcggcgcgg
     1261 aattcctcca ccgtcgccac catggggaac atcacggcaa gtttgcgccc ctgcgcgccc
     1321 agcagcagcg cgcgcagctg gcggcgcaga atggccggcc ggtccagcgc gatgcgcaaa
     1381 gagcgccagc ccatggccgg gttttcctca gcggaggcag cctcgccggg cagcagcttg
     1441 tctgcgccca aatccagggt acggaattgc acgcgcttgc cattggcgcg gtccagcacg
     1501 cggccatatt ccgccgcctg
//
LOCUS       DASQCV010000339         1644 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2561892, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000339 DASQCV010000000
VERSION     DASQCV010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2561892"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..671)
                     /locus_tag="VEQ16_05140"
     CDS             complement(<1..671)
                     /locus_tag="VEQ16_05140"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP63249.1"
                     /translation="MATAQYDVIVVGAGNAALAAAVSAKENGAACVLVLEKAPREMRG
                     GNTHWSGGVLRFAFDDPREIGPLLPGVEKQFEDFYEGIQPYTRADFHGDLMRVTNGQT
                     DPVLSRVLVDNSKDTVFWMHEVGKVPMEPSVSLTGVRKGNKIIWARGLVVRAEHEGVG
                     LSAAWFATAERMGVEIRYDSAVTTLLIDEDSAVCGVKVRDPNGIQEIAGGAVILGCGG
                     FEANV"
     gene            complement(774..1172)
                     /locus_tag="VEQ16_05145"
     CDS             complement(774..1172)
                     /locus_tag="VEQ16_05145"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP63250.1"
                     /translation="MKEQQYDIARAYFTAVSNGELPDALLTDDMTGWITTNGSMDKAA
                     YQRLVKLLAAMCDGPLRFTIQSLTADEDRVVAEATSEGRLINGESYANTYVFVFRTRD
                     GRIASVAEHYNALIAREKLVPLMAEAAAKL"
     gene            1311..>1644
                     /locus_tag="VEQ16_05150"
     CDS             1311..>1644
                     /locus_tag="VEQ16_05150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008852960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase N-terminal
                     domain-containing protein"
                     /protein_id="HYP63251.1"
                     /translation="MDGPADFGAFDYIIIGAGSAGCVLANRLSADARNSVLLLEAGGR
                     DDYLWIRIPVGYLYCIGNPRTDWCFSTASEPGLNGRRISYPRGLGLGGSSSINGMIYM
                     RGQARDYDL"
BASE COUNT          293 a          476 c          550 g          325 t
ORIGIN      
        1 tgcacattgg cctcgaaccc gccgcagcca aggatgacgg cgccgccggc gatttcctga
       61 atcccgttgg ggtcgcgaac cttgacgccg cacaccgcac tgtcctcgtc gatgaggagg
      121 gtcgtcacgg cggagtcgta acggatttcc acgcccatgc gctcggcggt ggcgaaccag
      181 gcggcggaga ggccgacgcc ctcatgctcg gcgcggacga cgagcccgcg cgcccagatg
      241 atcttgttgc ccttgcgcac tccggtgagc gacacggagg gctccatcgg caccttgccg
      301 acttcatgca tccagaaaac agtgtccttg gagttgtcga caagcacgcg ggagaggacg
      361 gggtcggtct ggccgttggt gacgcgcatc aaatcgccgt ggaaatcggc gcgcgtgtaa
      421 ggctggatgc cttcgtaaaa atcctcgaac tgcttctcga cgccaggcag aagcgggccg
      481 atctcgcgcg ggtcgtcgaa ggcgaagcgc agcacgccgc cggaccaatg ggtgttgccg
      541 ccgcgcatct cgcgcggggc tttttccagc accagcacgc aggcggcgcc attctccttg
      601 gcggacacgg cggcagccaa agcggcattg ccggcgccga cgacgatgac gtcatattgt
      661 gcggtggcca tgatctgttc ctcgtcagtt tatgcgcccg gattggctgg gctcgtggat
      721 gctggcgaga tgaatattct tgtatacaaa aatgcgcaag ataaaatgca acgctagagt
      781 tttgcagcgg cctccgccat caggggaacg agtttttccc gcgcgatcaa ggcgttataa
      841 tgctcggcca cggaggcgat gcggccgtcg cgggtgcgga agacgaagac ataggtgttg
      901 gcgtagctct cgccattgat gagccgcccc tcggacgtgg cctcggccac cacgcggtcc
      961 tcgtcggcgg tgagggactg gatggtgaag cgcaacgggc catcgcacat ggcggcgagc
     1021 agtttgacca ggcgctgata ggcggcttta tccatgctgc cattggtggt gatccagccg
     1081 gtcatgtcgt cggtcagcag cgcatccggc agctcgccat tggagacggc ggtgaaatag
     1141 gcacgggcga tgtcatattg ttgctctttc atggatccct cccctggtca tgcgcattct
     1201 aggccgcgcc attatggcca ggattgacaa aatatgacgc ttctccgcaa ggcggcattt
     1261 ttgcgcgcgg gcgccgccgc gctatgctca gcagagcaaa tggggggaac atggacgggc
     1321 cggcggattt tggggcgttc gattacatca tcattggcgc cggaagcgcg ggctgcgtgc
     1381 tggccaaccg gttgagcgcg gatgcgcgaa attccgtgct gctgctggag gcgggcgggc
     1441 gcgatgatta tctgtggatc aggattcccg ttggctatct ctattgcatc ggcaatccgc
     1501 gcaccgattg gtgcttctcc accgcctccg agccggggct gaatggccgg cgcatttcct
     1561 atccgcgcgg gctggggctg gggggcagct cctcgattaa tggcatgata tatatgcgcg
     1621 gccaggcgcg ggattatgat ttat
//
LOCUS       DASQCV010000340         2281 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3224550, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000340 DASQCV010000000
VERSION     DASQCV010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2281
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3224550"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            310..1185
                     /locus_tag="VEQ16_05155"
     CDS             310..1185
                     /locus_tag="VEQ16_05155"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYP63252.1"
                     /translation="MRLTISALAVAAILAAPAAFAQPAPAAAPSAAAPKDADPVVAIV
                     GDYKVHMSDLQADLQNAPAQAQQLPPDQLYQMLLSQEVDRKAVLAAALKQGLEKDPAV
                     AKQMQDAANVKLENAYVQKKVLAQVTDAAVQAAYDKQYANKPGPEQVQARQILVQTEQ
                     QAKDIITQLNQGADFATLAQKDSIDPGAKNGGELGWFSQDEMVPAFAAAAFALKPGEY
                     TKTPVQTQFGWHVILVEGKRTAPTPKLADVQGQIKQQLGDAAVQSTLDDVRSQVKIQL
                     FNPDGTPAAAAPAGQ"
     gene            1185..>2281
                     /gene="argJ"
                     /locus_tag="VEQ16_05160"
     CDS             1185..>2281
                     /gene="argJ"
                     /locus_tag="VEQ16_05160"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019085069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HYP63253.1"
                     /translation="MAQLPVSPLALPLPLMPPLAGVRLATAEAGIRYKGRTDVLLAEL
                     AEGTAVAGVFTKNLCPGAPVTYCREALQGGLARGLVVNAGNANVFNGVAGMRAVEATA
                     EAAAKTLGTTADMIFLASTGVIGEPLPAHKIVAVMDELHGKLEADRFAEAAGAIMTTD
                     TFPKGSTRTAKIGGTDVRINGIAKGSGMIAPDMATMLCFIFTDAAVPAPALQAMLAKG
                     VESTFNCVTIDSDTSTSDTVLLFATGQAGNPVTEDPAHLADFRRALHELLYDLALMVA
                     RDGEGARKLVTINVEGAVSHASAKRIGLSIANSPLVKTAIAGEDANWGRIVMAVGKAG
                     EPADRDRLGVCVGGVWMAQAGGVVPGYDETPV"
BASE COUNT          418 a          759 c          760 g          344 t
ORIGIN      
        1 aaccatgcca atgacgtggc gctacccggc ggggacggga agagcctgcc cttcctgatg
       61 tatccgcagg cgcagctcga cggcgtgtgg ctagacccgc tcgccccggc cacggtgaaa
      121 tacgatatcc aggcggtgcc catctaacgc ggaattggaa tgaacgcgcc agccgaacaa
      181 atcttccttg gttcggctgc agcgcccctg ttaaaaatgg taagccgttg ggcaatggca
      241 gggcccagtc ttgccggggc gcgggctttg ccgcatagag cggcaaatcc caaaggaagg
      301 ttccgcctca tgcgtttgac gatttccgcc ctggctgtcg ccgcaattct cgctgcgccc
      361 gccgcctttg cgcagcccgc ccccgccgcg gcgccgtccg ccgcagcccc caaggatgcc
      421 gaccctgtgg ttgccatcgt cggcgactat aaggttcaca tgagcgacct ccaggcggac
      481 ctgcagaacg ccccggccca ggcgcagcaa ttgccgcccg accagctcta ccagatgctg
      541 ctgagccagg aggtggaccg caaggccgtg ctcgccgccg cgctgaagca ggggctggag
      601 aaggatcccg ccgtggcgaa gcagatgcag gatgccgcga acgtcaagct ggaaaatgcc
      661 tatgtgcaga agaaggtgct ggcccaggtg accgacgccg ccgtgcaggc cgcctatgac
      721 aagcaatatg ccaacaagcc cggccccgag caggtgcagg cccgccagat cctggtgcag
      781 accgagcagc aggccaagga catcatcacc cagctcaatc agggcgcgga tttcgccacg
      841 ctggcgcaga aggacagcat cgaccccggc gccaagaatg gcggcgagct cggctggttc
      901 agccaggacg agatggtgcc ggccttcgcc gccgccgcct tcgccctgaa gcccggcgaa
      961 tataccaaga ccccggtgca gacgcagttc ggctggcacg tgatcctggt ggaaggcaag
     1021 cgcaccgcgc cgacgcccaa gcttgccgac gtgcagggcc agatcaagca gcagctgggc
     1081 gatgccgccg tgcagtccac gctcgatgat gtgcgctcgc aagtgaagat ccagctcttc
     1141 aacccggacg gcacaccggc cgccgccgcg cccgcggggc agtaatggcg cagctccccg
     1201 tctcaccgct ggctttgcca ttgcccctca tgccgccgct ggccggggtc aggctggcca
     1261 cagcggaggc ggggatacgc tataaaggcc gtaccgacgt gcttctggcc gagctggccg
     1321 aaggcacggc ggttgccggt gttttcacca agaatctctg ccccggcgcg ccggtaacct
     1381 attgccgcga ggcgctgcag ggcgggctcg cgcgcgggct cgtggtgaat gcgggcaatg
     1441 ccaatgtgtt caacggcgtg gccggcatgc gcgcggtgga ggccacagcc gaggcggcag
     1501 cgaaaacgct ggggacgacg gcggacatga tcttcctcgc ctcgacaggc gtcatcggcg
     1561 agccgctgcc agcgcataag attgtcgccg tgatggatga actgcacggc aagctggagg
     1621 cggaccgttt cgccgaagcc gccggcgcca tcatgaccac cgacacattc cccaaaggct
     1681 cgacccgcac ggcgaagatc ggcgggacag atgtgcgcat caacggcatc gccaagggca
     1741 gtggcatgat cgcgccggac atggcgacga tgctctgctt tattttcacc gatgccgccg
     1801 tcccggcccc ggccctgcag gcaatgctgg ccaaaggcgt cgagtccacc ttcaactgcg
     1861 tcaccatcga tagcgacacc tccacctcgg acacagtgct gctgttcgcc accggccagg
     1921 ccggcaatcc ggtgacggaa gaccccgccc atctcgccga tttccgccgc gccctgcatg
     1981 agctgctgta tgatttggcg ctgatggtgg cgcgtgacgg cgagggggcg cggaagctgg
     2041 tgacgatcaa tgtcgagggc gcggtgagcc acgcctcggc aaagcggatc ggcctttcca
     2101 tcgccaactc ccccctggtg aaaaccgcca ttgccggcga ggatgccaat tggggccgca
     2161 tcgtcatggc cgtgggcaag gcgggcgagc cggcggaccg cgaccgcctg ggggtgtgcg
     2221 tgggcggcgt atggatggcg caggctggcg gcgtggtgcc aggctatgac gagacgccgg
     2281 t
//
LOCUS       DASQCV010000341         2199 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1070673, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000341 DASQCV010000000
VERSION     DASQCV010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2199
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1070673"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1140)
                     /locus_tag="VEQ16_05165"
     CDS             complement(<1..1140)
                     /locus_tag="VEQ16_05165"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYP63254.1"
                     /translation="MDITPPEALSGLFHPAIATWFRQEFGAPTPAQAEAWPSIRAGRH
                     TLIAAPTGSGKTLAAFLAAIDSLVRQGLEAALPDETQIVYVSPLKALSNDIERNLQAP
                     LAGIRTALEAQGLPDVGVRTWVRTGDTPSAEREKMRRRPPHIVVTTPESLYILLGSES
                     GRNMLRTTRTVIVDEIHALAPNKRGAHLALSLERLSALCEHRLLRVGLSATQKPIELM
                     AHFLIGATELEKLDCSIIDTGHVRDRDIALEVPSSPLEAVMSAEVWTQLYDRMVELAG
                     SHRTTLVFVNTRRMAERVAGQLSDRLGEGLVMAHHGSMAREHRLDAEQRLKRGELKIL
                     VATASLELGIDIGHIDLVCQLGTPRSIATFLQRVGRAGHSLRSVPK"
     gene            1679..2104
                     /locus_tag="VEQ16_05170"
     CDS             1679..2104
                     /locus_tag="VEQ16_05170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011632728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper family protein"
                     /protein_id="HYP63255.1"
                     /translation="MHSHRLTAFVIALLALTGCQPTVPTGPTITVMPGPGKTLAQFQN
                     DDAICRQFAQSQVQAPPSGLNSPTGTAAATTVGATAAGALLGAAAGNAGMGAAIGAGA
                     GLLGGSAWGAHRSGQQSADMQQSFNIAYAQCMRTRGNSI"
BASE COUNT          437 a          705 c          675 g          382 t
ORIGIN      
        1 cttgggcaca gaccgcagcg agtgcccggc ccggcccaca cgctgcaaaa aggtagcgat
       61 cgatcgtggc gttccaagct ggcagaccaa gtcgatgtgt ccgatatcga tgcccagctc
      121 cagcgaagcc gtggcgacca aaatcttcag ctcaccgcgc ttaagccgct gctcggcatc
      181 cagccggtgt tcccgcgcca tgctgccatg atgcgccata accagccctt cgcctagccg
      241 gtcggaaagc tgcccggcca cacgctcagc catgcgcctg gtattgacga acaccaaagt
      301 ggtgcgatgc gacccggcca gctccaccat gcggtcataa agctgggtcc acacctccgc
      361 cgacatcacg gcttccagcg gtgaggacgg cacttccaga gcgatgtcgc ggtcgcggac
      421 atggccggta tcgatgatgc tgcaatcgag tttttcaagc tcggtggcgc ctatgagaaa
      481 atgtgccatg agctcgatcg gcttctgcgt ggcggacagg cccacccgca acaaacggtg
      541 ctcgcaaagc gccgaaagcc gctccagcga cagggcgaga tgggcgccgc gcttatttgg
      601 cgccaaagca tggatctcgt ccacgatcac ggtccgtgtc gtccgcagca tgttgcggcc
      661 ggattccgag cccagcagga tatagagcga ttccggcgtg gtcacgacga tatggggtgg
      721 ccggcggcgc attttctcgc gctcggcgga gggcgtgtcg ccggtgcgca cccaggtgcg
      781 gacacccaca tccggcaggc cctgtgcctc cagcgccgtc ctgatgcccg ccagaggcgc
      841 ctgcagattg cgctcgatat cattggacag cgccttcagc ggcgagacgt aaacaatctg
      901 ggtctcgtcc ggcagtgctg cctccaaccc ttgccggacc agcgaatcaa tcgccgcgag
      961 gaaggccgcc agcgttttgc cggagccggt gggtgcggcg atgagcgtat ggcgccccgc
     1021 ccggatggac ggccaggcct ccgcctgcgc cggcgtgggc gcgccaaatt cctggcggaa
     1081 ccaggtggcg atggccggat ggaacaggcc agacagggct tcgggcggcg tgatatccaa
     1141 aaaacgatcc tgatctttgc cgggacaaac cgtcacacag gccgcaacgg gcctggcggc
     1201 gggcggtgcc ttggtcagat atatagaacg tgacgggcca cctccaaata taaccaagcc
     1261 accgcccgcc gcccatcgcc ttgccgccaa accggcgtca tggtcccaac gcgcgctggc
     1321 tcgtagtgat tgaaattcca tggtttcccc aagtatctcg cgcgcatgaa ggggctgaac
     1381 atgagcacgc aaatggttaa ttcgtatttc gtattggata accaataaaa tacgcggatc
     1441 ttgtccgaat attaacccgg ccatcgggcc ggcgggacaa aacgggacaa ccatgtcccg
     1501 caaattcggg ttgcgatacc gccattatca agctcctagc ttgaaggccg gcgcttcgaa
     1561 cctggctgcc tgtccggtcc gtttcgcgtc tggttctctt gtaatatcgc tgccccaacc
     1621 aaatatcacc ccggcagccg ttatagcgtc aaaaagccaa tacagccgga ggtctcaaat
     1681 gcactctcat cggttaactg ccttcgtgat cgccttgctt gccttgacag gttgtcagcc
     1741 gaccgtgccg accggaccga cgattaccgt catgcccggg ccgggcaaga cactcgcaca
     1801 attccagaat gacgacgcca tctgccgcca gttcgcgcag agtcaggtcc aggccccgcc
     1861 atccggcttg aacagcccca caggtacagc ggcggcgacc actgttggcg ctacggcggc
     1921 aggcgcgttg ctgggggcgg cggctggtaa tgccggcatg ggtgcggcga tcggcgcagg
     1981 tgccgggctt ctgggcggct cggcgtgggg cgcgcatagg tccggccagc agtcggcgga
     2041 catgcagcag agcttcaaca tcgcctatgc acaatgcatg cgcaccaggg gcaatagcat
     2101 ctagtaggat tgataacgca gcgcgctgga tggcgcggcc ggcctgaatc cgggccggcc
     2161 acctgaacgc gcggtgccac gggcgacaat cccataaaa
//
LOCUS       DASQCV010000342         2187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2064459, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000342 DASQCV010000000
VERSION     DASQCV010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2064459"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(182..1117)
                     /gene="thiL"
                     /locus_tag="VEQ16_05175"
     CDS             complement(182..1117)
                     /gene="thiL"
                     /locus_tag="VEQ16_05175"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003629938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HYP63256.1"
                     /translation="MTQEFARIETYFAPLAGEAGLGLKDDAAVFAPPPGRELVLTTDQ
                     MLEGVHFLSNDDPAVVARKLLRRNLSDLAAMGADPLGYLLTTALPADLPEDWLARFAK
                     GLETDQLTFNIKLFGGDSSSSKHGIALTATVLGSVAPGMALRRNGAKPGDSIWVTGTI
                     GDAALGLEARRGHLAGSHHYLVKRSILPTPRLGLDLAGIATAAIDVSDGLVQDLGHMA
                     RESGLCAVIRADMVPASPEAAALGEAFLETRLTGGDDYELILAVPPGKGEALKEACGD
                     LTVTRIGMFQPGEGVHVLSSTETVLEFSSGGWSHF"
     gene            complement(1184..1678)
                     /gene="nusB"
                     /locus_tag="VEQ16_05180"
     CDS             complement(1184..1678)
                     /gene="nusB"
                     /locus_tag="VEQ16_05180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011631710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HYP63257.1"
                     /translation="MTARPRTLSRVAAVQALYQAEQSETSPETVIDQFVRHRIGEMPG
                     RGGLEEGHLREADVPLFARIVRTASQQQDTVDGMIAGALPESWPMARLDPVLRAILRA
                     GGAELWTAGGAPAKVVINEYLNVAHGFFSGEEPRMVNGVLDRLAHLLRAEEFTGGGQV
                     GDGS"
     gene            complement(1675..>2187)
                     /gene="ribH"
                     /locus_tag="VEQ16_05185"
     CDS             complement(1675..>2187)
                     /gene="ribH"
                     /locus_tag="VEQ16_05185"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: protein motif:HMM:NF013081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HYP63258.1"
                     /translation="APDWRREDWRRDMSTADAPVARAPELSGPAPRILAISAPYYRQV
                     VDGMLEAARQILTQVDAELVVQEVSGAYELPQALSIAAAAAQKFDGYILLGCVVRGET
                     DHYEFICASAMDGLMRVATEQVLCVGTALLTVDTLAQAVARSHETGSNKGAEAAVACL
                     KQIALKRALA"
BASE COUNT          397 a          707 c          719 g          364 t
ORIGIN      
        1 aaaggttatt ggtacgatat cgacaatatc gtgtaccggg tcatgtatgc gacattggaa
       61 gccgccgacg tacggcaatt catcatggct tccatctgcg agggaactgg gaattttcgc
      121 tcccaggtca cgctggcacc cgccgagagc gggtagattt aaccggcctg ccgcggcttt
      181 tctaaaaatg cgaccacccg cctgacgaaa actccagcac cgtctctgtg ctggagagca
      241 catgcacccc ctcccccggc tggaacatgc cgatgcgggt gacggtgagg tcgccgcagg
      301 cttccttcag cgcctcgcct ttgccgggcg gcacagcgag gatgagttcg taatcatcgc
      361 ccccggtaag gcgggtttcc aggaaggctt cgccgagcgc ggcggcttcc ggcgaagccg
      421 ggaccatatc ggcgcggatg acggcgcaga ggccggattc gcgggccatg tggccgagat
      481 cctggaccag cccgtccgag acatcgatgg cggctgtggc aatgccggcg aggtccagcc
      541 ccaggcgcgg cgtgggcaaa atggaacgtt tcacgaggta atgatgcgag ccggcgagat
      601 ggccgcgccg cgcctccagc cccagggccg catcgccgat ggtgccggtg acccagatgc
      661 tgtcgcccgg cttggcccca ttgcggcgca gggccatgcc cggcgccacg ctgccgagca
      721 cggtggcggt aagggcgatg ccgtgtttgg aagatgaaga atcgccacca aacagcttga
      781 tattgaaagt aagctgatcc gtctccaacc ctttggcgaa gcgcgccagc caatcctccg
      841 gcaggtccgc aggcagcgcc gtagtgagga gatagccgag cggatcagcc cccatggcgg
      901 cgaggtcgga gaggttccgg cgcaataatt tgcgcgcgac cacagccgga tcgtcattgg
      961 agaggaaatg caccccctcc agcatctggt ccgtggtgag caccagctcg cgccctggcg
     1021 ggggggcgaa gacggcggca tcgtccttca ggccgagccc cgcctcgcca gcgagcggcg
     1081 cgaaataagt ctctatccgg gcgaattcct gtgtcatgca ctccatcgct cagaggttag
     1141 gacgcccaat gccgggggtg gctgtgccct accagcaaga gctttacgaa ccgtctccaa
     1201 cctggccacc gccggtgaac tcctccgcgc gcaacagatg cgccagacgg tcgagcacgc
     1261 cattcaccat gcgcggctcc tcgccggaga aaaagccatg cgccacgttg agatattcat
     1321 tgatgacgac tttggcgggg gcgccgcccg cggtccataa ttccgcgccg ccggcgcgca
     1381 atatggcgcg cagcaccggg tcgagccttg ccatgggcca gctttccggt agggcgccgg
     1441 cgatcatgcc atccacagta tcctgctgct ggctggcggt gcggacgatg cgggcgaaca
     1501 acggcacatc ggcctcgcgc agatggcctt cctccaaccc gccgcggcca ggcatctcgc
     1561 ctatacggtg gcggacgaac tggtcgatga cggtctcggg cgacgtctcg ctctgctcgg
     1621 cctgatagag cgcctgcacg gcggcgacgc gcgagagggt acgcgggcgg gcggtcatgc
     1681 cagagcccgt ttcagcgcaa tctgcttgag gcaggccact gccgcctcgg cgcccttgtt
     1741 ggagccggtc tcatggctgc gggccacggc ctgggccagt gtgtccaccg tgagcaaggc
     1801 cgtgccgacg cagagtacct gctcggttgc cacacgcatc agcccgtcca tggcggaggc
     1861 gcagatgaat tcataatggt cggtctcgcc gcgtacgaca cagccgagca ggatatagcc
     1921 atcgaatttt tgcgccgcgg cggcggcgat ggacagggcc tgaggcagct cataggcgcc
     1981 ggaaacctcc tgcaccacga gctccgcatc gacctgggtg agaatctggc gcgccgcctc
     2041 tagcatacca tccaccacct ggcggtaata aggcgcgctg atggcgagaa tcctgggcgc
     2101 cgggccggac aattccgggg cgcgggcgac gggggcgtcg gcagtgctca tgtcgcgtct
     2161 ccaatcttca cgtctccaat ctggcgc
//
LOCUS       DASQCV010000343         2177 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1568501, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000343 DASQCV010000000
VERSION     DASQCV010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1568501"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..443)
                     /locus_tag="VEQ16_05190"
     CDS             complement(<1..443)
                     /locus_tag="VEQ16_05190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019016040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HYP63259.1"
                     /translation="MLLAPAAALLAASFAGEPLLAQWTQVFMGTTAQFIAQFFPLFLL
                     GALFGKLMEDSGAVAAIANFLTGWLGPQRAVLAVVVAGALVTYGGVSLFVSYFVLVPM
                     AVALFQAADIPRRLIPASVLLGSTTFTMSAMPGTPAIQNTIPMPF"
     gene            complement(516..1535)
                     /locus_tag="VEQ16_05195"
     CDS             complement(516..1535)
                     /locus_tag="VEQ16_05195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019462989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HYP63260.1"
                     /translation="MARERVLIDLALQGGGSHGAFTWGVLDRLLMEDWLQIEGVSGTS
                     AGAMNAAVMISGHAKNGAEGARSALEQFWRNVARAAAFSPFQRSFLDVLFGRWTLDYS
                     PAVQVMYTMTQLISPYDMVFFGGNPLLKVLEESVDFAALRGARIRLFVTATNVRTGRT
                     RVFRNEDISIPALLASACLPQFFPAVEIDGEAYWDGGFAGNPTMFPLIAETESDDTIL
                     IPINPIERRDVPRRARDIVERVNEISFNTATLKELKMLALLRRVADPSGGEGRRWAEM
                     RMHVVNNDAILDLGASSKLNAEWAFLTMLRDEGRRAAETFLAAHGDDLGKRSSLDIDQ
                     LLEGV"
     gene            complement(1739..>2177)
                     /locus_tag="VEQ16_05200"
     CDS             complement(1739..>2177)
                     /locus_tag="VEQ16_05200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63261.1"
                     /translation="IATLAGCVLPPPAPPPNSHPQVSITNGGSLITINNTMIAAAGQT
                     VRIGFLHDHQNPDCSLAVGQHPILDVTTQPAHGSLSQQQTEDFPTYPANNPLSKCNQA
                     RIAGTLFTYTPQTGYSGTDQFSYQIFTSTGQELVTNTAVTVAP"
BASE COUNT          433 a          652 c          714 g          378 t
ORIGIN      
        1 aaaaacggca tggggatggt gttctggatg gccggcgtgc cgggcatggc ggacatggtg
       61 aaggtggtgc tgcccagcag cacagaggcc gggatgagcc ggcgcggaat atccgccgcc
      121 tggaataagg ccaccgccat cggcacgagt acgaaatagg acacgaacag gctcaccccg
      181 ccataagtga caagcgcccc cgccaccacc acggcaagca cggcgcgctg cggcccgagc
      241 cagcccgtga ggaaattggc gatggcggcc accgccccgc tatcctccat caatttgccg
      301 aacaaggcgc cgagcaggaa gagcgggaag aattgcgcga tgaattgcgc cgtcgtgccc
      361 atgaacacct gcgtccattg cgccagcagc ggctcgccag cgaaggatgc cgccagcagc
      421 gctgccgcgg gggcgaggag caaaatgctc cagccgcgat aggcgagcca gatgagcagc
      481 ccgagcccga gcaggatgcc gagaaacccg atttcctaaa ccccttccag aagctggtcg
      541 atatcgagcg aggagcgctt accgagatca tcgccatgcg cggcgagaaa agtttccgcc
      601 gctcggcgcc cctcgtcgcg cagcatggtc agaaacgccc attccgcatt cagcttggag
      661 gaggcgccaa ggtccaggat cgcgtcatta ttgaccacat gcatgcgcat ctccgcccag
      721 cgccgcccct cgccgccgct ggggtcggcc acgcgccgca gcagcgcgag cattttcagc
      781 tccttcagcg tggcggtgtt gaaggagatt tcattgacac gttcgacaat atcgcgcgcg
      841 cggcgcggca cgtcccgccg ctcgatcggg ttgatcggga tcaggatcgt atcgtccgat
      901 tccgtttcgg caatgagcgg gaacatggtc gggttgccgg cgaagccgcc atcccaatag
      961 gcctcgccgt cgatctccac ggcagggaag aattgcggca ggcaggcgga ggcgagcagg
     1021 gcagggatgg agatgtcttc attgcggaaa acacgcgtgc gcccggtgcg cacattggtg
     1081 gcggtgacga aaagccggat gcgcgcgccg cgcaaggccg cgaaatccac gctctcctcc
     1141 agcaccttga gcagcgggtt gccgccgaag aacaccatgt cgtagggcga gatgagctgt
     1201 gtcatggtgt acatgacctg cacggctggc gagtaatcga gcgtccagcg cccgaacagc
     1261 acatcgagaa aactgcgctg gaacgggctg aaggccgcgg cccgcgcgac attgcgccag
     1321 aattgctcaa gtgctgagcg cgccccttcg gcaccgtttt tcgcgtgccc gctgatcatc
     1381 acggccgcat tcatcgcgcc cgccgaggtg ccggacacgc cctcaatttg cagccagtct
     1441 tccatgagaa gacggtccag cacgccccag gtgaaagccc cgtgcgagcc accgccttgc
     1501 agggccaaat cgatcagaac gcgctcacgt gccaaggcga agcccccgct ggtctgtctg
     1561 atacgcaaac tgaccatagc ggcgggtccg cagggaggca acaaggccct ctacgtcagt
     1621 gcggctggct ggagattggt ggggtaaggt ctttgtatgt cttgtttgtt gcaaaaaccg
     1681 ttggtttgcg ctggaggatt gacacagtca catgtggcac ggggttgggg cggcgtcttc
     1741 agggcgcaac ggtgacagcc gtgtttgtca ccagctcctg gccggtgctg gtgaaaatct
     1801 gataggaaaa ttggtccgtc ccgctatagc cggtctgtgg cgtataggtg aacaaggtgc
     1861 cggcaatgcg tgcctggtta catttcgaca acggattgtt ggcaggatag gtcggaaaat
     1921 cttcagtctg ttgctgactc aagctgccat gcgccggctg tgtggtgacg tccaggatcg
     1981 gatgctgccc taccgccagg ctgcaatcgg gattctggtg gtcatgcagg aagccgatgc
     2041 gtaccgtttg cccggcggct gcgatcatcg tgttgttgat ggtgatcagg ctcccgccat
     2101 tagtgatgct cacctgcgga tggctgttgg gcggcggcgc gggcggcggc agcacacagc
     2161 cggccagtgt agcaatg
//
LOCUS       DASQCV010000344         3151 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3226225, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000344 DASQCV010000000
VERSION     DASQCV010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3151
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3226225"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1453
                     /locus_tag="VEQ16_05205"
     CDS             <1..1453
                     /locus_tag="VEQ16_05205"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYP63262.1"
                     /translation="PDQFLSQLRDDVAARQLLVPLLGGVTPPADLIDRLFAYVGERRT
                     AQTVAVANAAQPAPPAPGDDVLQRFWRNHPAQFTSPEYRHVQIVILSPSLLAPQEQAA
                     QADIDAAVARAVAAGAPSVAQRSVQVLTVGDLASSSRLEAAWKKGASWNKMQALAKQY
                     GASAIELDQAAQAQIPSTVLGQAVFAADIGKVVGPVAGDSGMYVFKVTAAGQSGPDKA
                     ALQAQATQALQLQKAQADVAADVDQLQDALAGQTPLDQLPGNLGLVAVQGTLDANGMT
                     PEGGPAPIPGGDALKAAILKTAFAAHPGDPPQLISAADGSYFALSLQKIEPPALQDFA
                     QVHDKVLAAWTEGQQARAAEIQATALYRAVQQGQSLSDAAKAAGLQVTNTVPLLRSSP
                     QQSADVQALSDVLFSLKQGQATMVQTSTGFTVAQLTQITAPNPAQYQNVYQQWQQQMT
                     KDLQNDLAESFLAGLQARDKVTVNQKLLAQIYQ"
     gene            1465..2973
                     /gene="trpE"
                     /locus_tag="VEQ16_05210"
     CDS             1465..2973
                     /gene="trpE"
                     /locus_tag="VEQ16_05210"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HYP63263.1"
                     /translation="MNAVSSDRFETFRTAYDNGSGALVWRHGIADLLTPVAAFLKVAH
                     GQPYAFLLESVEGGAVRGRYSVIAMQPDLIWRCEHGVASVNRDARANPAAFTPVGEAP
                     LKNLRALIAETRLDVPEHLPPMTGGLLGYLGYDMVRLMEELPAIKPDVLGVPDAILAR
                     PGLFIIFDGVTDEMTLAAPVYPKAGVSAAEAYAAAESRLNELAQELERPVPKLTGRQL
                     TPLEQSSNMEKEEFLGVVETAKNYIRAGDAFQIVPSQRFETKFSLPPFALYRSLRRVN
                     PAPFLFFLDFGTFCAVGSSPEILVRYRDGNVTIRPLAGTRRRGVDAAEDAALEAELLA
                     DPKERAEHLMLLDLGRNDVGRVAEIGSVKVVKSFAIERYSHVMHISSTVEGRLRSDCD
                     ALDALVAGFPAGTLSGAPKVRAMEIIEELEPSRRGLYAGCIGYFAANGTMDTCIGLRT
                     AVVKDGVMYVQAGVGVVADSDAEAEYAESVQKARALFRAAEDAVRYVSAPEV"
     gene            2977..>3151
                     /locus_tag="VEQ16_05215"
     CDS             2977..>3151
                     /locus_tag="VEQ16_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006115291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HYP63264.1"
                     /translation="MILLIDNYDSFTFNLVQFFGDLGAECLVKRNDALSPEEALALKP
                     DAIVLSPGPCTPNE"
BASE COUNT          527 a          909 c         1136 g          579 t
ORIGIN      
        1 gccggaccag tttctgagcc agttgcgcga tgatgttgcc gcgcggcagc tgctggtgcc
       61 gctgctgggt ggggtgacgc caccggcgga cctaatcgac cggctctttg cctatgtggg
      121 cgagcggcgc acggcgcaga cagtggcagt ggcgaatgcg gcgcagcccg cgccgccggc
      181 gcccggggac gatgtgctgc agcgtttttg gcgtaaccac ccggcgcaat tcacctcgcc
      241 ggaatatcgt catgtgcaga tcgtgattct ctccccctcc ttgctggcgc cgcaggagca
      301 ggccgcccag gctgatatcg atgccgccgt ggcgcgcgcc gtggcggcgg gggcgccgag
      361 cgtggcgcag cgcagtgtgc aggtgctcac ggtgggagac ctcgctagct cctcgcggct
      421 ggaggcggcg tggaagaagg gggccagctg gaacaagatg caggctttgg ccaagcaata
      481 tggcgcctca gccatcgagc tggaccaggc ggcgcaggca cagattccct ccactgtgct
      541 agggcaagcg gtgtttgcgg ccgatatcgg caaggtcgtg ggaccggtgg cgggcgatag
      601 cggcatgtat gtgttcaagg tgacagcggc cgggcagagc gggccggaca aagccgcgtt
      661 gcaggcgcag gcgacccagg cgctgcaatt gcagaaggcg caggccgatg tggcggcgga
      721 tgtggaccag ctgcaggacg cgctggccgg gcagacaccg ctcgaccagc tgccgggcaa
      781 tcttggccta gtggcggtgc agggcacgtt ggatgcgaac ggcatgacgc ccgaaggcgg
      841 gccggcgccg attcccggcg gcgacgcact gaaggcggcc attctgaaga ccgccttcgc
      901 cgcgcatcct ggcgatccgc cgcagctgat cagtgcggcg gatggcagtt atttcgcgct
      961 ctcgctgcag aagatcgagc cgccggcgct gcaggatttt gcccaggtgc atgacaaggt
     1021 gctggccgcc tggacggaag gtcagcaggc gcgcgcggcg gaaatccagg ctacggcctt
     1081 gtatcgcgcg gtgcagcagg ggcagagcct gagcgatgcc gccaaggcgg ccgggctgca
     1141 ggtaaccaac acggtgccgc tgctgcgcag ctcgccgcag caatcggccg atgtgcaggc
     1201 gctgagcgac gtgctgttca gcctgaagca gggccaggcc accatggtgc aaaccagcac
     1261 gggcttcacc gtggcgcagc tgacgcagat taccgcgcct aatccggccc agtaccagaa
     1321 cgtgtaccag caatggcagc agcaaatgac aaaggacttg cagaatgatc tggccgagag
     1381 tttcctggcc gggttgcagg cgcgcgacaa ggtgaccgtg aaccagaagc tgctcgcgca
     1441 aatttaccag tgaagatgga tcctatgaac gccgtttcgt cagaccgttt tgagactttt
     1501 cgcaccgcct acgataatgg gagcggggcg ctggtctggc ggcacgggat tgccgatctg
     1561 ctgacgccgg tggccgcctt cctgaaggtg gcgcatgggc agccttatgc cttcctgctg
     1621 gaaagcgtgg agggtggggc agtgcgcggg cgctattccg tcattgccat gcagccggac
     1681 ctgatctggc gctgtgagca tggcgtcgcg tcggtgaacc gcgatgcgcg cgccaatccc
     1741 gctgccttca cgccggtggg cgaggcgccg ttgaagaatc tgcgcgcgct gatcgcggag
     1801 acgcggctcg atgtgccgga gcatctgccg ccgatgacgg gcgggctgct cggctatctg
     1861 ggctatgaca tggttcggct gatggaggag ctgccggcga tcaagccgga cgtgctcggg
     1921 gttcccgatg cgattctggc ccggcccggc ctgttcatca ttttcgacgg cgtgaccgat
     1981 gagatgacgc tggcggcgcc ggtttatccc aaggccgggg tctctgcggc cgaggcttac
     2041 gcggcggcgg aatcgcggct gaacgagctg gcgcaggaac tggagcggcc agtgccgaaa
     2101 ctcaccgggc ggcagctgac gcccctggag cagagctcca atatggagaa ggaggagttt
     2161 ttgggcgtcg tcgagacggc caagaattat atccgcgccg gggatgcatt ccagattgtc
     2221 cccagccagc gtttcgagac gaagttttca ctgccgcctt ttgcgcttta tcgcagcctg
     2281 cgccgcgtca acccggcgcc gttcctgttc ttccttgatt tcggcacgtt ttgtgccgtg
     2341 ggctccagcc cggaaattct ggtgcgatac cgcgatggca atgtgaccat ccggccgctc
     2401 gccggcacac ggcggcgcgg ggtggatgcg gcggaggatg cggccctgga ggcggaattg
     2461 ctggccgacc cgaaggagcg ggctgagcat ctgatgctgc tcgatctcgg gcgcaatgat
     2521 gtgggccgcg tggcggaaat cggctcggtg aaagtggtga agagttttgc catcgagcgc
     2581 tattcgcatg tgatgcatat ctcctccacc gtggaggggc ggctgcgttc tgattgcgac
     2641 gccttggatg cgctggtcgc cggattcccg gcgggtacgc tttcgggcgc gccgaaagtg
     2701 cgggctatgg agatcatcga ggagttggag ccgtcgcgcc gcgggcttta tgccggctgc
     2761 atcggctatt ttgccgccaa cggcacgatg gatacctgca tcgggctgcg caccgcggtg
     2821 gtgaaggatg gcgtcatgta tgtgcaggcg ggggttggcg tggtcgctga ttccgatgcc
     2881 gaagcggaat atgcggaaag cgtgcagaag gcgcgtgcgc tgttccgcgc agcggaggat
     2941 gcggtgcgct atgtttccgc gccggaggtt tgagccatga tcttgctcat tgataattac
     3001 gatagcttta cgttcaacct ggtgcagttc tttggcgatt tgggcgcgga atgcctggtg
     3061 aagcgcaatg atgcgctttc gccagaagag gcgctggcgt tgaagcccga tgcgattgtg
     3121 ctctcgcctg gcccatgtac ccccaatgag g
//
LOCUS       DASQCV010000345         1837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2563950, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000345 DASQCV010000000
VERSION     DASQCV010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2563950"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..548)
                     /locus_tag="VEQ16_05220"
     CDS             complement(<1..548)
                     /locus_tag="VEQ16_05220"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF002003.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003905 - alkylbase DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HYP63265.1"
                     /translation="MSRPLTKSFFRRSVHEVAPDLIGATLLFNGVGGRLVEVEAYHQT
                     DPAAHSYHGPTARNAVMFGPPGYAYVYRSYGIHWCLNFVCEPKGSASAVLIRALEPTA
                     GLPLMRRRRGLSDVRLLCGGPGRVCEALGITAAHNGLALDEPPFALFARTGRGEVVAG
                     PRIGITKAAEKPWRYGLKGSNFL"
     gene            1030..>1837
                     /locus_tag="VEQ16_05225"
     CDS             1030..>1837
                     /locus_tag="VEQ16_05225"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012566366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HYP63266.1"
                     /translation="MRQAQAVKLGVAAGGGTPREFCTITVTDGIAMGHAGMKSSLPSR
                     EVIADSVELSVRGHSYDALIGVAGCDKSQPGMMMAMCRLNVPAIYIYGGSILPGTFKG
                     APVTIQDVYEAVGKHSIGAMSDGDLDVLEQNACPSAGACGAQFTANTMATISEAIGLA
                     LPYSAGAPAPYEIRDKFCVLAGEMIMELLVKNIRPRDIVTRKALENAAAVVAATGGST
                     NAALHLPAIANECGVKFDLFDVAEVLKKTPYIADLKPSGRYVAKDMFEAGG"
BASE COUNT          352 a          574 c          582 g          329 t
ORIGIN      
        1 agaaagttcg agcctttgag cccatagcgc cacggctttt ccgccgcctt ggtgatgccg
       61 atccgcggtc cggcgacgac ttcgccccgt ccggtcctgg caaacagcgc aaacggcggc
      121 tcatccaagg ccagtccgtt gtgcgctgcg gtaatcccga gagcctcgca gacccgccct
      181 ggcccgccgc aaagaagccg cacatcgctc aagccgcggc gccggcgcat aagcggcagg
      241 ccagccgtcg gctccagcgc ccgaatgagg acggcgctgg ccgaaccctt cggctcacag
      301 acgaagttga ggcaccagtg gataccgtag gagcggtaaa cgtaagcgta gccgggaggc
      361 ccaaacatca ctgcattgcg ggcggtcggc ccatggtagc tatgcgccgc cggatcggtc
      421 tggtgatagg cctccacttc gaccagccgg ccgccgacgc cgttgaagag cagcgtcgcc
      481 ccgatcaggt cgggcgccac ctcgtgaacg ctgcggcgga agaacgattt ggtcagcggt
      541 ctggacacgc cccatcgttg cagaccggca acagcgtggt aaatctccgc ttaaccgaaa
      601 tgcctccagc gcgttgagtc tgtggctgcg cggacacagc gccggaagat ttaagcttac
      661 cgcagcgcac tcgcaggcaa cgccgctttt tagccatagg atttctcgac atcgatgccg
      721 tgcggctgcc gtccatgaac cgaacgtggc ctgagagccg ttgtgcatac gtccgctctg
      781 gaaaagccaa tacaggcttt ggatcggacg ggagaggcga atagggccgg tttggctcgt
      841 gtgagcttta tggacgtcaa gagcgacttg aaattgcggc tgccaagccg tcacgccacc
      901 gaaggccccg accgcgcgcc gcaccgggcg ttctattacg ccatggggct gacgcgggag
      961 cagatccatc agcccttcgt cggcgtggca acctgttgga acgaggccgc gccttgcaat
     1021 atcgcgctga tgcgccaagc ccaggcggtc aagcttggcg ttgccgctgg cggtggcacg
     1081 ccccgcgagt tctgcaccat taccgtgacc gacggcattg ccatgggcca tgccggcatg
     1141 aagtcgtctt tgccgtcgcg cgaagtgatt gccgactcgg tggaattgtc ggtgcgcggg
     1201 cattcctatg acgcgctgat cggggttgct ggctgcgaca agtcgcaacc ggggatgatg
     1261 atggcaatgt gccggctcaa cgtgccggcg atctacatct acggcggctc gatcctgcca
     1321 ggcaccttta aaggggctcc ggtcaccatc caggacgtct acgaggcggt cggcaagcac
     1381 tcgatcggcg ccatgtcgga tggcgatctg gacgtgctgg agcagaatgc ctgcccgtcg
     1441 gcgggggcat gcggcgccca gttcaccgcc aacaccatgg ccacgatctc cgaagccatc
     1501 gggctggctt tgccttattc ggccggtgca ccggcgcctt atgaaattcg cgacaaattc
     1561 tgcgtgctgg ccggcgagat gatcatggag cttttggtca agaacatccg gccgcgcgac
     1621 atcgtcaccc gcaaggcgct ggaaaatgcc gcggcggtgg tcgccgcgac cggcggttcg
     1681 accaatgcag ccttgcactt gccggcaatc gccaacgaat gcggggtcaa attcgatctg
     1741 tttgatgtcg ccgaagtcct gaaaaagaca ccatatatcg cggatttaaa accatccggc
     1801 cgctatgtcg ccaaagacat gttcgaagct ggcgggg
//
LOCUS       DASQCV010000346         2626 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2895391, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000346 DASQCV010000000
VERSION     DASQCV010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2626
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2895391"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            446..838
                     /locus_tag="VEQ16_05230"
     CDS             446..838
                     /locus_tag="VEQ16_05230"
                     /inference="COORDINATES: protein motif:HMM:NF015581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HYP63267.1"
                     /translation="MSDAEEIIELISPIAFAPTLERLVDAIHSAGLVLFFRFDHAANA
                     REAGISMPPTTVLAYGHAKGGTPVMLAAPLAALDLPLRVLVREREDGRAVVAFHPAAA
                     MLRRAGVPEALATRLDPAQTILAAALAA"
     gene            complement(858..2021)
                     /locus_tag="VEQ16_05235"
     CDS             complement(858..2021)
                     /locus_tag="VEQ16_05235"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020592145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase family
                     protein"
                     /protein_id="HYP63268.1"
                     /translation="MARYVFRLPDIGEGVTEAELITWHVSEGDRLEEDQPMADVMTDK
                     ATVEMTAPVAGLVVALHGEPGEKIAVGAPLVELELDAPAAEPPASLTAPAAPEASSRP
                     ITVPLPGGALLASPATRRRAREHGIALQDVPGTGPGGRITSADLESFLARAAAQGGVR
                     EMRVIGLRRQIAERMQAAKRNIPHFTYVEEVDMTALEAQRAVLNAGRAADQPKLTLLP
                     FLIRALVEVLPRFPQLNAHYDGDAGLLRLFEPIHIGIATQSPAGLLVPVVRDAETLDL
                     WGAATEITRLSTAAREGRATREELTGSTITLSSLGALGGLAATPIINAPEVAIIAPNR
                     LGERPVARGGQIVIRTMMNLSASFDHRIIDGFEAASFIQALREMLERPGAITG"
     gene            complement(2024..>2626)
                     /locus_tag="VEQ16_05240"
     CDS             complement(2024..>2626)
                     /locus_tag="VEQ16_05240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020592144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HYP63269.1"
                     /translation="THVAGLKTVIPATPYDAKGLLIAAIEDDDPVIFLEPKRIYNGPF
                     DGRHDLPARPWAGHEGSEVPEGHYTVKLGQAAIRRPGRTVTVLAYGTMVHVSLRAVEE
                     CGIDAEVIDLRSLVPLDIETIISSVNKTGRCVIVHEATRYSGFGAELSALVQERCFYR
                     LEAPITRVTGWDTPYPHAFEWDYFPGPQRVAEGLRRVLES"
BASE COUNT          452 a          827 c          874 g          473 t
ORIGIN      
        1 catcttcatg cttcgcggct ggtatgtgag tgtcatgctg accaacgagc cggtgagtcc
       61 ggtggcgata aaacgcttcg ccggccaggt tgtgcgcacg ctcctggcta gccgggcgga
      121 atggtgaagc gcccggcgcg agcaagatag cgcctcaaag cgaaaacttg atcgagcgcc
      181 aacgccagac gcgaaggcgc ttgcccctgt tcgtctgatc atgaagccgg gcccggggcg
      241 caccggattg acttgcgtac ccctccatta aaataagtcg gaattgtatc atttatagac
      301 ataccagcgc tgatttggtg cagctccaag tgcatctcca agtgcatcgc aggagtgaaa
      361 tttgctatgt cacaaggacc ggtccgcccg ccgggaagct catcaagcat gctggcggtc
      421 ttcgcattcc ggaaaggagc acgatatgag cgacgcggag gagattatcg agcttatctc
      481 gccaatcgca ttcgccccca cgctggagcg cctcgtagac gcgatccatt ccgccgggct
      541 ggtcctcttt tttcgtttcg atcacgcggc gaatgcgcgg gaggcgggga tatcgatgcc
      601 ccccacgaca gtgctggcct atggtcacgc gaagggcggg acgcccgtga tgcttgcggc
      661 accattggcg gcgctcgacc tgccgctacg tgtgctggtg cgggagcgcg aagatgggcg
      721 cgcggtggtc gcgtttcatc cggctgccgc gatgctgcgc cgcgccggcg tgcccgaggc
      781 gctcgccacc cggctcgatc ccgcacagac gattcttgcc gctgcgctgg ccgcgtgaat
      841 ggcggcgcgg cgggcgatta gccggtgatg gcgccgggcc gctccagcat ttcgcgcaat
      901 gcctggatga atgaggctgc ctcgaacccg tcaatgatgc ggtggtcgaa agaggcggac
      961 aaattcatca tggtgcgtat gacaatctgc ccgccgcgcg ccacggggcg ttcgcccagc
     1021 ctgttgggag cgatgatggc gacttccggg gcattgatga tcggcgtggc ggcgaggccg
     1081 cccagcgcgc ccaggctgct cagtgtgatg gtcgagccgg tcaattcctc gcgggtggcg
     1141 cgcccttcgc gggctgcggt agacagacgc gttatctcgg ttgccgcgcc ccataaatcg
     1201 agtgtttcgg catcgcggac caccggcacc agcagcccgg cggggctttg tgtggcgatg
     1261 ccgatatgga ttggctcgaa taagcgcagc aggcccgcat cgccatcgta atgggcgttg
     1321 agctgcggga aacggggcag cacctccaca agggcgcgta tgaggaaggg cagcaaggtg
     1381 agtttgggct gatctgcggc ccggcctgca tttagcaccg cgcgctgcgc ttccagcgcc
     1441 gtcatgtcca cttcctcgac ataggtgaag tgcgggatgt tgcgcttggc tgcctgcatg
     1501 cgttcggcaa tctgccggcg caggccgatg acccgcatct cgcgcacgcc gccctgcgcc
     1561 gcggcgcgcg ccagaaagct ttccaaatcg gcggaggtga tcctcccgcc ggggcctgtt
     1621 cccggcacgt cctgcaaggc aatgccatgc tcgcgggcgc ggcggcgggt tgcgggggag
     1681 gcaagcaatg cgccgccggg caagggcacg gtgatagggc gtgatgaggc ctcgggcgcg
     1741 gccggcgcgg tcagagaagc gggtggttcg gcggcagggg catccagctc cagttccacc
     1801 aggggggcgc cgacggcaat tttttctcca ggctcaccat gcagtgccac caccaggccg
     1861 gcgaccgggg cggtcatttc cacggtggcc ttgtcggtca tcacgtcggc catcggctgg
     1921 tcttcctcca gccggtcacc ctcgctcaca tgccaggtga taagctcagc ctcggtcacg
     1981 ccctcgccaa tatccggcag ccggaaaaca tagcgcgcca tgctcagctc tccagcaccc
     2041 ggcgcagccc ctcggccacg cgttgcggcc ctgggaaata atcccattcg aaagcgtgcg
     2101 ggtacggcgt gtcccagccg gtgacgcgcg tgatgggggc ctccagccgg tagaagcagc
     2161 gttcctgcac caaagccgaa agttccgcgc caaaaccgga atagcgcgtg gcttcatgca
     2221 cgatgacgca acggccggtc ttgttcaccg agcttatgat cgtctcgatg tccagcggca
     2281 ccaggctgcg caaatcgatc acctcggcat cgatcccgca ctcttccacg gcacgcagcg
     2341 agacatgcac catggtgccg taggccagca cggtgacggt ccggcccgga cggcggatgg
     2401 cagcttgccc cagtttcacc gtgtaatggc cttccggcac ctcgctgccc tcatggccgg
     2461 cccaggggcg ggcgggcaaa tcgtggcggc cgtcgaacgg gccgttatag atgcgtttgg
     2521 gttccaggaa gatcaccgga tcatcatcct cgatggcggc gataagcagc cctttcgcat
     2581 catagggcgt ggcgggaatg accgttttca gcccggcgac atgggt
//
LOCUS       DASQCV010000347         1809 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_906273, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000347 DASQCV010000000
VERSION     DASQCV010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1809
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_906273"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            30..890
                     /locus_tag="VEQ16_05245"
     CDS             30..890
                     /locus_tag="VEQ16_05245"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63270.1"
                     /translation="MPDRKLEGKIALITGASRGIGKGIACVLGEQGATVYVTGRTVSQ
                     GTHPLPGTLGETVAEVEKRNGKAVAVAVDHGDDKQVAALFERIGKEQGRLDILVNNAI
                     ALPYEMTQPGSFWEKPISNWEIFDIGVRAAFVAAWHAAHLMVPQKSGLIVGLSGYVGV
                     TYTYNTIFGTAKTAVDRMARDMAIELKPHNVASVSLWQGFTYTERAKENLRTIAGMAQ
                     TLRSDAGSSPEFPGRVIAALAVDPRLMEKTGGTFINAELAEEYGLTDIDGRKIPSMRA
                     ERGSPIWKPV"
     gene            933..>1809
                     /locus_tag="VEQ16_05250"
     CDS             933..>1809
                     /locus_tag="VEQ16_05250"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63271.1"
                     /translation="METLRFDGRTAIVTGAGGNPSLGRAHALLLAERGANIVVNDIGV
                     LPAALGYPGIASAEAVADEIRARGGKAVADTHDVTSEAGAAALVRAALDAFGSIDILI
                     NNAGICRVVSFEEMTPADFRQSVEVNLMGTVAMCRVAWPHMKAAGYGRIVNTPSGSMA
                     GFAWQTAYAAAKAGVFSFTRSLAAEGEAHGIKANAVIPGAYTRMVMAAQEETSPWIAH
                     GKAHMPPELVSPAYVFLAHEGVPFTGECLESMGGSVRRLYLARTPGITAQDMTPETLA
                     LRWREVVDGADAGIFR"
BASE COUNT          330 a          529 c          610 g          340 t
ORIGIN      
        1 tggaaacgga aaacgcgaag gtgtgagcca tgccggatag gaaactggaa ggaaaaatcg
       61 ctctcatcac cggcgccagc cgcggcatcg gcaagggcat cgcctgcgtg ctgggcgaac
      121 agggggcgac ggtttatgtc accggccgca cggtgagcca gggcacgcat cctctgcccg
      181 gcacgctggg cgagacggtg gcagaagtgg agaagcgcaa cggcaaggct gtcgccgtgg
      241 ccgtggacca tggtgatgac aagcaggtgg ctgcgttgtt cgagcgcatc ggcaaggagc
      301 aagggcggct cgatattctc gtcaataacg ccatcgcctt gccctatgag atgacacaac
      361 caggctcctt ctgggaaaag ccgatttcca actgggagat tttcgatatc ggcgtccgtg
      421 ccgcctttgt cgccgcctgg catgcggcgc atctcatggt accgcaaaaa tccgggctga
      481 ttgtcgggct ctccggctat gtcggcgtga cctacaccta caacacgatt ttcggcacgg
      541 cgaagaccgc ggtggaccgc atggcacggg acatggcgat tgagctcaag ccgcataatg
      601 tggcgtccgt ctccctctgg cagggcttca cgtatacgga gcgggcgaag gagaatctgc
      661 gcaccattgc cggtatggcg cagacgctgc gcagcgatgc cggcagctcg cccgaatttc
      721 cggggcgggt catcgccgcg cttgcggtcg atccgcgatt gatggaaaag actggcggca
      781 ccttcatcaa tgccgagctg gccgaggaat atgggctcac tgacattgat ggccgcaaga
      841 tcccgtcgat gcgcgccgag cgtggttcgc ccatctggaa gccggtctag gtttttctgc
      901 cggttttctg tcgcaaggag tccggaggaa aaatggagac attgcgtttc gatggccgca
      961 ccgcgattgt cacgggcgcg ggtggtaacc cgagtcttgg gcgcgcgcat gcgctgctgc
     1021 tggccgaacg cggggccaac atcgtcgtca atgatatcgg cgtgctgccg gccgcactcg
     1081 gttatcccgg catcgcctcg gcggaggcgg tggcggacga gatacgcgcc cgcggtggca
     1141 aggcggttgc ggatacgcat gatgtcacca gcgaggcggg tgctgcggct cttgtacgag
     1201 cggcgctgga tgcgttcggc agcatcgata tcctcatcaa taatgccggc atctgccgtg
     1261 tcgtctcgtt cgaggagatg acgccggctg atttccgcca gtccgtcgag gtgaatctga
     1321 tgggcacggt ggcgatgtgc cgcgttgcct ggccgcatat gaaggcagcg ggatatgggc
     1381 gcatcgtcaa caccccttcg ggctctatgg cgggctttgc ctggcagacc gcctatgccg
     1441 cggcgaaagc cggcgtgttc tccttcacgc gctctctggc ggcggaaggt gaggcgcatg
     1501 gcatcaaggc caacgccgtc atccccggcg cctatacccg catggtgatg gcagcgcagg
     1561 aagagacatc gccctggatt gcccatggca aggcgcatat gccgccggaa ctcgtctcgc
     1621 cagcttatgt attcctggcg catgagggcg tgcccttcac cggggaatgc ctggaatcca
     1681 tgggtggaag cgtgcgtcgt ctttatctcg cccgcacgcc gggcatcacg gcacaggaca
     1741 tgacgccgga aacactggct ttgcgctggc gcgaggtagt ggatggcgcc gatgccggca
     1801 tcttccgcc
//
LOCUS       DASQCV010000348         4398 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1237286, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000348 DASQCV010000000
VERSION     DASQCV010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4398
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1237286"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..478
                     /locus_tag="VEQ16_05255"
     CDS             <1..478
                     /locus_tag="VEQ16_05255"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008851398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ubiquinone/menaquinone biosynthesis
                     methyltransferase"
                     /protein_id="HYP63272.1"
                     /translation="SDINDSMLDVARDRAASKGYLADIEFLPADAENLPLPNGSFDRI
                     SMAFGLRNCTNKDRVIAEAFRLLKPGGRFFVLEFSQLQIAALEKLYDAWSFQALPRIG
                     QLVAKDSASYQYLAESIRMFPNQERLKAMFEAAGFERVTYRNLSGGIAAIHAGWRL"
     gene            475..1656
                     /gene="coaBC"
                     /locus_tag="VEQ16_05260"
     CDS             475..1656
                     /gene="coaBC"
                     /locus_tag="VEQ16_05260"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007088457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HYP63273.1"
                     /translation="MKRILLIVSGGIAAYKALELVRLLKKAGYGVTSVLTKAGEEFVT
                     PLSLQALTEMKVYRDLFSLTDESEMGHIELSRAADLVVVAPATANILAKLVSGLADDL
                     ASTLLLATDKRVLVAPAMNVRMWQHPATEANMKLLKSRGVLVVEPDEGPMACGEYGPG
                     RLAEPPVIFAAIEAALNDGPLKGKHAIVTSGPTHEPIDPVRYLANRSSGKQGHAIAAA
                     LAAQGARVTLITGPVNVPDPFGMEIVKVETAREMFAAVEAALPVDIAVCAAAVADWHV
                     AEASQKLKKDGSGQPPDFKLSENPDILASISKQGPQRPRLVIGFAAETEKLEEHATAK
                     RKRKGCDWIVANNVGGTGIMGGDQNEVLLITQNGAESWARMGKIALAQKLAARIGEFF
                     A"
     gene            1653..2099
                     /gene="dut"
                     /locus_tag="VEQ16_05265"
     CDS             1653..2099
                     /gene="dut"
                     /locus_tag="VEQ16_05265"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011630864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HYP63274.1"
                     /translation="MNVGVKIKRLPHGAGLELPAYTTAGAAGADVLAAVSEPITIAPG
                     GRTLIPTGFSMALPPGYELQIRPRSGLALKNGITLPNTPGTIDEDYRGEVCVILLNTS
                     SEPFIITRGMRIAQAVLAPVVRAAWEEVEDLDATARGEGGFGSTGH"
     gene            complement(2102..2530)
                     /locus_tag="VEQ16_05270"
     CDS             complement(2102..2530)
                     /locus_tag="VEQ16_05270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63275.1"
                     /translation="MPGTLKLKLTVYQPAITAGPGEQVGYEYDLTVNNPESYAHAGKH
                     SDAASGKCQVVPVTGTLSFPNPAVPAVSPFSGVIFIYDGAPLIGFPLCLVANSTEDLL
                     PFSLTMAFPAAPVAFYSGAINFGLWPGPFRDVTASFLAPQ"
     gene            2742..4049
                     /locus_tag="VEQ16_05275"
     CDS             2742..4049
                     /locus_tag="VEQ16_05275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007397264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HYP63276.1"
                     /translation="MMITAPLAWIEPETAFLRLAGPGVAFLDSAASGDPRSSVSYICL
                     APEATLALEQNPYATLRGWMAAHRPVALPDWPFPFKGGAVGWLGYDIARAAAGVPSRF
                     APVPGLPGGWFGLYSTILGFNHATRALHYLGPEACLPDIVARLTIPSTPPALPALAWG
                     AEMAREDYLARHEKLRAYIAAGDVYQANFTLRFTAARPAAATLPALHRALRALSPAPF
                     AACLDAGGIGLVSASPERFLRLSPDGQVETRPIKGTAARHADPARDAASAAALAHNRK
                     ERAENLMITDLLRNDLGQVCATGSIAVPELFAVESYAQAHHLVSAVTGRLKPGLDAFD
                     LLAATLPGGSITGAPKRRALEIIDELEIGPRGAYCGALAWIGFDGAMDSAIIIRTITA
                     TADRLYAQAGGGITWDSSAQAEYEEAMLKLSPLLALGHVLGHV"
     gene            4030..>4398
                     /locus_tag="VEQ16_05280"
     CDS             4030..>4398
                     /locus_tag="VEQ16_05280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011388886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HYP63277.1"
                     /translation="MSSAMSETYLWLNGELLPADKARIDPADRGLMLGDGLFETMAAK
                     DGAVPEFARHHARLAAGASFLRIPMLLNQPALEESCRALLAANGMTEAALRLTLTRGP
                     APRGLAPPPRPIPTMLITAAP"
BASE COUNT          763 a         1504 c         1364 g          767 t
ORIGIN      
        1 ctccgacatc aacgactcca tgctcgacgt tgcccgcgac cgcgccgcct ccaaaggcta
       61 tctcgccgat atagaattcc tgcccgcgga tgccgagaac ctgccactcc ccaatggttc
      121 gttcgaccgc atctccatgg ccttcggctt gcgcaattgc accaacaagg accgcgtcat
      181 cgccgaggcc ttccgcctgc tgaaaccggg cgggcgcttc tttgtgctgg aattctcgca
      241 actgcagatc gcggccttgg aaaaactcta cgatgcctgg tccttccagg ctttgccgcg
      301 catcggccag ctcgtggcca aggattccgc cagctaccag tacctcgccg agagcatccg
      361 catgttccca aaccaggagc ggctgaaggc gatgtttgag gcggcgggct tcgagcgcgt
      421 cacctaccgc aatctttcgg gcggcatcgc cgccatccat gcgggctggc gcttgtgaag
      481 cgaatcctgc tcatcgtcag cggcggcatc gccgcctaca aggcgctgga gcttgtacgg
      541 ctgctgaaaa aagccggcta tggcgtgacc tccgtgctta ccaaagccgg ggaagaattc
      601 gtcacgccgc tctcgctgca ggcgctgacg gagatgaagg tctatcgaga cctcttctcc
      661 ctcacggatg agagcgagat ggggcatatc gagctttccc gcgccgcaga cctagtggtg
      721 gtagccccgg ccacggccaa tatcctggcc aagctcgtct ccggcctcgc ggatgacctc
      781 gccagcacct tgcttctggc caccgataag cgcgtgctcg tggcgcccgc catgaatgtg
      841 cgcatgtggc agcacccggc caccgaggcc aatatgaagc ttctcaagag ccgcggcgtg
      901 cttgtggtgg aacccgatga aggccccatg gcctgcggcg aatatgggcc aggccgcctc
      961 gccgagccgc cggtcatttt cgccgccatc gaggccgcac tgaatgatgg gccgctcaag
     1021 ggcaaacacg ccatcgtcac ttccggaccg acccatgagc ccatcgaccc ggtgcgttat
     1081 ctcgccaacc gctcctccgg caagcagggc catgccatcg ctgccgcgct cgccgcccag
     1141 ggcgcgcgcg tcaccctcat caccggcccg gtgaacgtgc cggacccgtt cgggatggag
     1201 atcgtgaaag tggaaaccgc gcgtgagatg ttcgccgcgg ttgaagccgc gttgccggtg
     1261 gacatcgccg tgtgcgccgc cgccgtggcg gactggcatg tggcggaggc ctcgcagaaa
     1321 ctgaaaaagg acggcagcgg ccagccgccc gacttcaagc tttccgaaaa cccggatatt
     1381 ctcgccagca tttccaaaca aggcccgcaa cgtccgcgcc tcgtcattgg cttcgccgcc
     1441 gaaacggaaa agctcgaaga gcacgccact gccaagcgca agcgcaaagg ctgcgactgg
     1501 atcgtggcga ataatgtcgg cggcaccggc atcatgggtg gcgaccagaa tgaggtgctg
     1561 ctgattaccc agaatggcgc ggagagttgg gcgcgcatgg gcaaaatcgc gctggcccag
     1621 aagctcgccg cgcgcatagg ggaatttttt gcatgaatgt tggagtgaag atcaagcgcc
     1681 tgccgcatgg ggccgggctg gaattgcctg cctacaccac cgcaggcgct gccggggcgg
     1741 atgttctggc ggcggtgagc gagcccatca ccatcgcccc cggcggccgt acgctcatcc
     1801 ccaccggctt ctccatggcg ctgccgcccg gctatgagct gcaaatccgc ccgcgctcag
     1861 gcctcgccct gaaaaacggc atcacgctcc ccaacacgcc ggggacgata gatgaagatt
     1921 accggggcga ggtctgtgtc attctgctca acacctcatc cgagcctttc atcatcacgc
     1981 gcggcatgcg catcgcccag gccgtgctgg ccccggtggt gcgcgccgcg tgggaagagg
     2041 tggaagacct cgacgccacg gcgcgtggtg agggcggctt cggcagcact ggccattaat
     2101 cttattgcgg ggcgagaaaa ctcgccgtga cgtcgcggaa cgggccgggc cagagaccga
     2161 aattaatggc gccggaataa aacgcaaccg gcgcggcggg gaaggccatg gtcaggctga
     2221 atggcagcag atcctccgtg ctgttcgcca ccaggcagag tggaaagccg atgagcgggg
     2281 cgccatcata aatgaaaatc accccgctga agggcgaaac ggccggcacc gccgggttgg
     2341 ggaaagacag cgtgccggta accggaacga cctggcattt gcccgatgcc gcatcgctat
     2401 gcttcccggc atgcgcgtag gattccggat tgttgacggt gaggtcatat tcatatccaa
     2461 cctgctcgcc gggccccgcc gtgatggcag gctgatagac tgtgagtttc agcttgagcg
     2521 ttccgggcat tgagtcctcc tttgcgcaag gcggcgccgc taccgggaat gtttgtctgc
     2581 agcgcgaaac tgcaaccggc gggagcgatg gggggaagaa ttttttgcag ctttttgaaa
     2641 aaagctgcac caaaaacttt tgtaacttgg ggcgggggat gtgagtccat agggtgtctc
     2701 atggtcttgt ccggaacggg tgggacggcc aaaagcgggt tatgatgata acggcgcctt
     2761 tggcctggat tgagcctgaa accgcttttc tgcgcctggc ggggccgggt gttgcgttcc
     2821 tggacagtgc ggcgtccggc gatccgcgtt cgtccgtcag ctatatctgc ctcgcccccg
     2881 aagccacact ggcgctcgaa caaaatccct atgcgacgct gcgcggctgg atggcggcac
     2941 atcgcccggt ggcgctgccg gactggccct ttcccttcaa gggcggtgcc gtgggctggc
     3001 tcggctacga catcgcccgc gcagccgccg gtgtgccgag ccgttttgct cccgtgcccg
     3061 gcctgcccgg cggctggttc ggtctctaca gcaccatcct tggtttcaac cacgccacgc
     3121 gcgcgctgca ttatctcggg cccgaggcgt gcctgccgga catcgttgcg cgtctcacta
     3181 tcccctccac gccgcctgcc ctgcccgctc tggcctgggg agcagaaatg gcgcgtgagg
     3241 attatctcgc ccggcatgag aaacttcgcg cctatatcgc ggcgggagat gtgtaccagg
     3301 ccaatttcac gctccgcttc accgccgcgc gcccagccgc cgccactttg cccgccttgc
     3361 accgcgcctt gcgcgccttg agccccgccc cgttcgccgc ctgccttgat gcagggggca
     3421 tcggcctggt gagcgcgtcg ccggaacggt ttctgcgcct ctccccggat ggccaggtgg
     3481 aaacccgccc catcaaaggc accgccgcgc gccatgcaga ccccgcgcgc gatgccgcca
     3541 gcgccgccgc cctggcgcac aaccgcaagg agcgcgccga gaacctgatg atcaccgacc
     3601 tgctgcgcaa cgatctcggc caggtctgcg ccactggctc catcgccgtg ccggaactct
     3661 tcgctgtgga aagctatgcc caggcgcatc acctcgtctc cgccgtcacc gggcggctca
     3721 agccgggatt ggacgcgttt gacctgctgg cagccaccct gcccggtggc tccatcaccg
     3781 gcgcgccgaa acgccgcgcg ctggaaatca tcgacgagtt ggagatcggt ccgcgcggcg
     3841 cttattgcgg cgcgctggcc tggatcgggt ttgacggtgc catggacagc gccatcatca
     3901 tacgcaccat caccgccacc gcggaccggc tctatgccca ggccggcggc ggcatcacct
     3961 gggattcgtc tgcccaagcc gaatatgagg aagccatgct gaaactctcc ccgctcctgg
     4021 cgctcggcca tgtcctcggc catgtctgag acctatctct ggctcaatgg cgagcttctt
     4081 cccgcggaca aggcgcgcat cgaccccgcc gatcgcggcc tgatgctggg cgacgggctg
     4141 ttcgaaacca tggcggcaaa ggacggcgcg gtgcccgaat tcgcgcgcca tcatgcccgc
     4201 ctcgccgccg gggcgtcctt cctgcgcatc cccatgctgc tcaaccagcc ggctctggag
     4261 gaaagctgcc gcgccttgct cgccgccaac gggatgacgg aggccgcctt gcgcctcacc
     4321 ctcacgcgcg gccccgcccc gcgcggcctg gccccgccgc cgcgccccat ccccaccatg
     4381 ctcatcaccg ccgcccca
//
LOCUS       DASQCV010000349         3583 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1900495, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000349 DASQCV010000000
VERSION     DASQCV010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3583
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1900495"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            122..2851
                     /locus_tag="VEQ16_05285"
     CDS             122..2851
                     /locus_tag="VEQ16_05285"
                     /inference="COORDINATES: protein motif:HMM:NF024516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HYP63278.1"
                     /translation="MKLRAGQAGKIILEAMHQLGRIALLLFMLVLAALGLFAFSLSRH
                     PIQIPNLTSWLATQASGESFTVRMGTAELAWAGYHEGASVPLVLRLSDVAVRSAAGAL
                     LAEVPQADLVVPPQDLLGGRGAILLLASAARITGSEAPVSIRANIWPARGFTLARATF
                     YVSIGKGRVDAGSSFVPLDSASFTISVTPGAVDVTDGMLALTPIGGSAPRGSFSFVAR
                     RHDDWTGTLHASIDAVRADEIGQYWPPVALSNTRKWVLNHITSGTARNAGYVFSLTAP
                     DNLSSLDLTNAVGGFDGVGLTLFWLQGGVPLTGLNGHFAMPDIDNAVITASAGQVGKV
                     QLRQGRMDIVGLNQRDQTGQLELDLAGQVPDVLAVLDAPPLGLLANAPRELSSATGQA
                     EGHVSATIPFEQGLSFKDITLKVTAQIHNVFMPAVLPPLGLQHGEVQLQTDGRQLALQ
                     AKAQFTGAPMQLKLKESFAGAGKQDLTVSGTAGEAFWHFIGIDTASALYGPAAGAAPF
                     TLHVTGAVIGAQTAQLQADLSKMGFTLPALGWSKMPGQAGHLAFTVSLQNGTFVAAQN
                     FTAAAPGLNVTGTQQGNSLSFATVAIGRTRAAGRLSWPAKPGGAWVADFSGTALDLRQ
                     PKTSHSAPAQSPPTPAKTPPAAAPSGPPWQVHLAFDRLYLADSPAPPLAAFSLTAAGR
                     GASLLQAEGATNEIYLSVAPQSPSLRTFALHSNNAGLLLRALGGYQHMQGGRLALRAE
                     YGEGQPAQGKATLEEARFINAPDVTKFLQALTLYGLADVASGPGLRISRAEIPFILQN
                     DVLTLHGARAYSSSLGFTASGNVNLATSMMDLDATIVPAYAVNSLPGKIPLIGRLFSA
                     EKGGGLLAMRAHISGPIDNARVSVNPLSALTPGFLRSIFGIGGQRKAPQPASH"
     gene            complement(2888..3454)
                     /locus_tag="VEQ16_05290"
     CDS             complement(2888..3454)
                     /locus_tag="VEQ16_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007004740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HYP63279.1"
                     /translation="MTENNDPTNPSPQEEALLEAPDARIAMLEQELQEMRDKWLRAEA
                     EMANLRARTQREVKDAKDYAVQKFARDVVEAAENLKRGIDSLPKRSEGEAEIIAKMRD
                     GFEGIERSFIALLERNNITRQDPTGATFDANLHQAMAEQESAEHPPGTVIQAWSQTWQ
                     LNGRLLRPAMVVVSKPPPGAAPRVDVEA"
BASE COUNT          561 a         1142 c         1212 g          668 t
ORIGIN      
        1 gcgaaatcct cgatgagccg cgccgcggct gcatcattgg aggggcgggg aaaattggcc
       61 gcgggtgccg ctgagcggcc cgtcttgtgg ttatggcgtt gcatctggca agcagaacag
      121 gatgaagctg cgtgcgggtc aagccggtaa gattatactt gaagcgatgc accagctcgg
      181 gcgcatcgcg ctgctgctct tcatgctggt gctggcggcg ctggggttgt tcgccttcag
      241 cctgtcgcgc cacccgatcc aaattcccaa tttgacctcc tggctggcga cgcaggcctc
      301 gggcgagagt ttcactgtgc ggatgggcac ggccgagctg gcctgggccg gctatcatga
      361 gggcgcttcc gtgcctctgg tgctgcggct cagcgatgtc gccgtgcgca gcgccgccgg
      421 cgcgctgctc gcggaggtgc cgcaggccga tctcgtggtg ccgccgcagg atctgctcgg
      481 cgggcgcggg gcgattctgc tgctggccag cgcggcacgc attaccggca gcgaggcgcc
      541 ggtgagcatc cgcgccaata tctggccagc ccgcggcttc accctggcgc gcgccacctt
      601 ctatgtcagc atcggcaagg gacgggtgga tgcgggcagc agttttgtgc ccctggattc
      661 ggccagtttc acgatcagcg tcacccccgg tgctgtcgat gtgacggatg gcatgctggc
      721 gctcacgccc atcggcggca gcgcgccacg gggcagcttc agcttcgttg cccgccgtca
      781 tgacgactgg accggtacac tgcatgccag catcgacgcg gtgcgagccg atgagatcgg
      841 ccaatattgg ccgccggtgg ctttgtccaa cacacgcaaa tgggtgctca atcacatcac
      901 cagcggcacg gccaggaatg cgggatatgt cttcagcctc acggcgcccg acaatttgtc
      961 cagcctcgac ctcaccaacg ccgtgggcgg gttcgacggt gtcgggctca ccttgttctg
     1021 gctgcagggt ggcgtgccgc tgaccgggct gaacgggcat ttcgccatgc cggacatcga
     1081 taatgcggtg atcaccgcct ccgccgggca ggtggggaag gtgcagctgc gccaggggcg
     1141 catggatatc gttggcctca atcagaggga ccagactggc cagcttgagc tggacctggc
     1201 gggccaggtg ccggacgtcc tggcggtgct cgacgcgccg ccgctggggc tgctcgccaa
     1261 tgccccgcgg gagctttcca gcgccaccgg ccaggccgag gggcatgtca gcgccaccat
     1321 cccgttcgag cagggtttgt cgttcaagga catcaccctc aaggtgacgg cgcagatcca
     1381 taacgtcttc atgccggcgg tgctgccgcc gctcgggctg cagcacggcg aggtgcagct
     1441 gcagaccgac gggcgccagc tcgctctaca ggccaaagcg caattcaccg gcgcgccgat
     1501 gcagttgaag ctgaaggaga gtttcgccgg ggccgggaag caggacctga ctgtgagcgg
     1561 cacggccggt gaggccttct ggcattttat cggcattgat acagcgagcg cgctgtatgg
     1621 ccccgccgcc ggggcggcgc cctttacctt gcatgttacc ggcgccgtca tcggcgcgca
     1681 gacggcgcaa ttgcaggccg atctcagcaa gatgggcttc actttgccgg ccctgggctg
     1741 gagcaaaatg ccggggcagg cggggcatct ggcctttacc gtgtcgctgc agaacggcac
     1801 cttcgtggcg gcgcagaatt tcaccgccgc ggcgccgggg ctcaacgtaa cgggcacgca
     1861 gcagggcaac agcctgtctt tcgccaccgt cgccattggc cgcacgcgcg cggcggggcg
     1921 gctgagctgg ccggcgaagc caggcggggc ctgggtggcg gatttctccg gcacggcgct
     1981 ggatctgcgc cagcccaaga cgagccattc tgcgccggcc cagagcccgc ccactccggc
     2041 caagacacca ccagccgcgg cgccgtctgg cccgccctgg caggtgcatc tggcctttga
     2101 taggctttat ctggcggatt ctccggctcc gcctctggct gcattcagcc tgaccgccgc
     2161 cgggcgcggc gccagcttgc tgcaggcgga gggcgcgacc aatgaaatat atctcagcgt
     2221 ggcgccgcaa agccccagcc tccgcacatt cgccctgcat agcaataatg ccgggctgct
     2281 gctgcgcgcc ttgggcggat atcagcatat gcagggcggt aggctggcgc tgcgcgccga
     2341 atatggcgag ggccagcctg cccagggcaa ggccactttg gaggaggcgc gcttcatcaa
     2401 cgcgccggat gtgaccaaat tcctccaggc tctcacttta tatggcctgg ccgatgttgc
     2461 ctctgggccg gggttgagaa tctcgcgggc ggagatccct ttcatcctac agaatgacgt
     2521 gctgaccctg catggggcgc gggcttattc cagctcgctg ggctttaccg cgagcggcaa
     2581 tgtcaacctc gccaccagta tgatggatct cgatgcgacc atcgtgccgg cctatgcggt
     2641 gaattcgctg ccgggcaaga ttcctttgat cgggcggctt ttctcggccg agaagggggg
     2701 cgggctcctg gccatgcggg cgcatatttc cgggcctatc gacaatgcgc gtgtgagcgt
     2761 gaatcccctc tccgctctta cccccggctt cctacgctcc atcttcggca tcggcgggca
     2821 aaggaaggcg ccgcaaccgg caagccatta gaaggaaggc caggggcaga gccctggcct
     2881 tccttcctta agcctctacg tcgacgcggg gcgcggcacc cggcggcggc ttgctcacca
     2941 ccaccatggc ggggcgcagc aggcggccat tgagctgcca ggtctggctc caggcctgaa
     3001 tcacagtgcc gggcgggtgc tccgcacttt cctgctcagc catggcctgg tgcagattgg
     3061 cgtcaaacgt ggcgccggtc gggtcctggc gggtgatgtt gttgcgctcc agcagggcaa
     3121 tgaaggagcg ctcgatgccc tcgaacccgt cgcgcatctt ggcaatgatc tcggcctcgc
     3181 cctcgctgcg cttgggcagg gaatcgatgc cgcgcttgag gttctcggcg gcttccacca
     3241 cgtcgcgggc gaatttctgc accgcgtagt ccttggcgtc cttcacctcg cgctgggtgc
     3301 gggcgcgcag attggccatt tcggcctcgg cgcgcagcca tttgtcgcgc atctcctgca
     3361 gctcttgctc gagcatggcg atgcgcgcat ccggcgcctc cagcagcgcc tcttcctggg
     3421 gggacggatt ggtcggatcg ttattctcgg tcatggggcc gaattaggcg atgtttggtc
     3481 atgaaacaag atgagcgatg tgcaagctgg atgggcgcgt atggatcgca catgaggtga
     3541 gtgatctata tcaaagactt acgcttccta cggtggctaa ggg
//
LOCUS       DASQCV010000350         1610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1237830, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000350 DASQCV010000000
VERSION     DASQCV010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1237830"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1080)
                     /locus_tag="VEQ16_05295"
     CDS             complement(<1..1080)
                     /locus_tag="VEQ16_05295"
                     /inference="COORDINATES: protein motif:HMM:NF024827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiheme c-type cytochrome"
                     /protein_id="HYP63280.1"
                     /translation="MPLLTRQTYPLGALAGAVLLYALAAAGSSATDTNQPVKYIGPGS
                     CAATSCHGSVKPVAGSRVLQNEYSIWIVQDKHSRAYQALTGEVGERMARILKLNAKAA
                     ESAKCLACHALYTTPEQRGRAFEISEGVSCESCHGPASAWLGPHTTRAWPHEKSVALG
                     MRDTRNVIHRSELCLECHLGTNEKFVDHEMIAAGHPDLYFELDSFSAVMPRHWKVPRE
                     SSPGQPIEAAEWSGVRDWATGQAVQLRAAMDRLARRAQAQGADKKDVWPEYSELSCFA
                     CHHSLGPAKDSWRQEHGYTGRRPGVPPFNASRYVIFRSFALPIDAASAQELDKQLQCV
                     SAEMSKLNPDRAVVATAALAAAPVAQ"
     gene            1296..>1610
                     /locus_tag="VEQ16_05300"
     CDS             1296..>1610
                     /locus_tag="VEQ16_05300"
                     /inference="COORDINATES: protein motif:HMM:NF013426.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase subunit E"
                     /protein_id="HYP63281.1"
                     /translation="MIFDELRAIQLRHGYLPKAELENLSQRSQTPLYQIHSVASFYPH
                     FHLAPPPRAEVLVCADMSCRLNGACELRAELAQRFAGAAPGEVQIRDVSCLGRCDRAP
                     AVA"
BASE COUNT          288 a          435 c          578 g          309 t
ORIGIN      
        1 ctgcgcgacc ggagcggccg ctaaggcggc ggtggcaacc acggcgcggt ctggattcag
       61 cttgctcatc tcggcggaca cacactgaag ctgtttgtcg agttcctgcg cggaagcggc
      121 gtcgatcggt agcgcgaatg agcgaaagat gacatagcgc gaggcattga acggaggaac
      181 accggggcgg cggccggtgt agccatgttc ctggcgccaa ctgtctttgg ccgggcccag
      241 cgagtggtgg caggcgaaac aagaaagctc ggagtattcg ggccagacat cttttttgtc
      301 ggcgccttgg gcctgggcgc gcctggcaag gcgatccatg gcggcgcgca gctgaacggc
      361 ttggccggtg gcccaatcgc gcacaccgga ccattccgcg gcttcgatgg gttggccggg
      421 actggattcg cgcgggacct tccagtggcg cggcatgacc gcggaaaagg aatcgagttc
      481 gaaataaagg tcgggatggc cggcagcgat catttcgtga tcgacaaatt tttcgttggt
      541 gccgagatgg cattcgaggc acagttcact gcggtggatg acgttgcgcg tatcgcgcat
      601 gccgagggcc acggattttt cgtgtggcca agcgcgggtg gtgtgcgggc cgagccaagc
      661 ggaggcgggt ccgtggcagg attcgcagga aaccccttcg gaaatctcga aagcgcggcc
      721 gcgctgctcg ggcgtggtgt aaagcgcgtg gcaggccagg catttcgctg attctgcagc
      781 tttggcgttc agtttgagga tgcgcgccat gcgttcgccg acttcaccgg taagcgcctg
      841 gtaggcgcgg ctgtgtttgt cctgaacaat ccagatggaa tattcgttct ggaggacgcg
      901 gctgcctgcg acgggtttga cgctgccatg gcaactggtg gcggcgcagg agccggggcc
      961 gatgtatttc acaggctggt ttgtgtcagt tgccgacgaa ccagcggcag ccagggcgta
     1021 gagcagaacg gcaccggcga gcgcgccgag cggataggtt tgccttgtga ggagcggcat
     1081 gaagacaggt acgaaggttc cttttgctta tagctttcgc ccgcgggaca agtcaaccgc
     1141 aaggctacgg cgttttcgag gggattgcgc gaaaagacaa cgggcccgga attagagcag
     1201 cggacggcgc gcgtttatgc ggaaatagcg tagactcccg cacgagcccg gcgggcttgc
     1261 acggccggac acgcgcattc atcggacact tttccgtgat ttttgacgag ctgcgagcca
     1321 tccagttgcg ccacggctat ctgccgaagg ctgaactcga gaatctttcg cagcgttcgc
     1381 agacacccct gtaccaaatc catagcgtgg cgagtttcta tccgcacttt catttggcgc
     1441 cgccgccgcg cgcggaggtg ctggtgtgtg cggacatgag ctgccggcta aatggggcgt
     1501 gcgagctgcg cgcggaattg gcgcagcgtt tcgcgggcgc ggcgcccggg gaagtgcaga
     1561 ttagggatgt gagttgcctg gggcggtgtg accgcgcccc ggcggtggcc
//
LOCUS       DASQCV010000351         2744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1404778, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000351 DASQCV010000000
VERSION     DASQCV010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1404778"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..933
                     /gene="recA"
                     /locus_tag="VEQ16_05305"
     CDS             <1..933
                     /gene="recA"
                     /locus_tag="VEQ16_05305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HYP63282.1"
                     /translation="QIEVIPSGSLGLDLALGIGGLPRGRIIEIYGPESSGKTTLALHA
                     IAEAQKRGGTCAFVDAEHALDPTYARKLGVDVDNLLISQPDAGEQALEICDTLVRSGA
                     IDVVVIDSVAALVPRAELEGEMGDSHMGLHARLMSQALRKLTGSVSRSNCMLIFLNQI
                     RMKIGVMFGNPETTTGGNALKFYASLRMEIRRIGQIKDRDEVVGNQTRVKVVKNKLAP
                     PFRQVEFDIMFGEGISKAGELIDLGVKAGVVEKSGAWFSYDSTRIGQGRENAKQYLRD
                     NPKTAEAIEKKIRDQSANIADALMAADDGGEGDD"
     gene            1199..>2744
                     /locus_tag="VEQ16_05310"
     CDS             1199..>2744
                     /locus_tag="VEQ16_05310"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP63283.1"
                     /translation="MLGLLFRIRETRWAGYLFPLPACLLAWAGHIALVHAGAVNIPFL
                     PFFCALVLSTVLGGIGPGLLCIIITMLMAHGLFIDPSPPLPLAGHNPTTTVSVTAIAI
                     LIVWLIDYGTTAAVRLDKASRTLRTVNETLEARIRDRTAALLEAEENLRQAQKMEAVG
                     QLTGGIAHDFNNLLTAIMGSLERLEAHLPHATPQELAPYIAAARDASNRAANLTNRLL
                     AFSRRQPLSPRATDINGLVASMEELISRTISPAIRLSIAPCPSLHATMVDPNQLEHAL
                     LNLCINASDAMPGGGELDISTANISFTAEQPRPSGLKPGDYVALTVADTGTGMAPEVL
                     ARVFEPFFTTKPLGKGTGLGLSMIYGFARQSGGHAEISSRIGMGTSVTLYLPRHCGRV
                     DEQLSLPAPASQPAARLGETILLVDDEPSIRLLAAEVLEEQGYTVHQAANAESALQIL
                     REGPSIDILIADLGLPGLNGSQLAETGRTLRPAMKILFITGYGERALRPAALPIPAHT
                     LLSKPFP"
BASE COUNT          514 a          981 c          766 g          483 t
ORIGIN      
        1 cagatcgagg tcattccctc cggttcgctt gggctcgacc ttgcgctggg catcggcggc
       61 ctgccacgcg ggcggatcat cgagatctac gggccggaaa gttccggcaa gaccacgctc
      121 gcactgcacg cgatcgccga ggcacagaag cgcggcggca cgtgcgcctt cgtcgatgcc
      181 gagcatgcgc tcgatcctac ctatgcgcgc aagttaggtg tcgacgtgga caacctgctg
      241 atcagccagc cggacgccgg cgagcaggcg ctggagatct gcgacacgct ggtgcgctcg
      301 ggtgcgatcg acgtagtggt gatcgacagc gtcgccgccc tggtgccgcg cgccgaactg
      361 gaaggcgaga tgggcgacag ccacatgggc ctgcacgcgc ggctgatgag ccaggcgctg
      421 cgcaagctca ccggcagcgt ctcgcgcagc aactgcatgc tgatcttcct caaccagatc
      481 cgcatgaaga tcggcgtgat gttcggcaac ccggaaacca ccaccggcgg caacgcgctg
      541 aagttctacg cctcgctgcg gatggagatc aggcggatcg gccagatcaa ggaccgcgac
      601 gaggtggtcg gcaaccagac gcgggtgaag gtggtgaaga acaagctggc gccgccgttc
      661 cgccaggtcg agttcgacat catgttcggc gaaggcatct ccaaggccgg cgagctgatc
      721 gatctcggcg tcaaagccgg ggtggtggag aaatccggcg cctggttcag ctatgattcc
      781 acccgcatcg gccagggccg cgagaacgcc aagcaatatc tgcgcgacaa cccaaaaacc
      841 gccgaggcca tcgagaaaaa aatccgcgac caatcggcca acatcgccga tgcactgatg
      901 gccgctgacg atggcggaga gggcgacgac tgagtcgccc gtcccttttc acgaaacctg
      961 tctgtttcat gaaagttggt aacttttagt gacactttaa caccggccaa ttggcatccg
     1021 gcctgcgtgc ggtttgttaa cttttgcggc ctgcatctgc ttggtttagt aaatttatca
     1081 tgcacttacc acgaaattcc accttaacgc gcggttacca tattcagata caacttgacc
     1141 ccgcgcccag gttgtaggca ccctgacgct ctgttcacga aaaagttagg actgccattt
     1201 gcttgggctg ctcttccgca tccgagagac cagatgggcg ggctatcttt tcccgctccc
     1261 ggcctgcctg ctcgcctggg ccggacatat cgcgctggtc catgccggcg ccgtcaacat
     1321 ccccttcctg cccttctttt gcgcccttgt cctcagcacg gtccttggcg gcatcggccc
     1381 cggcctgctt tgcatcatca tcacaatgtt gatggctcat ggactcttca tcgatccgtc
     1441 acctcccctt cccctcgccg gccataatcc caccaccacc gtttcggtga ccgccatcgc
     1501 catcctcatt gtctggctga tcgattacgg caccaccgcc gccgtccggc tggataaggc
     1561 cagccgcacc ttgcgcaccg taaacgaaac cttggaagcc cgcatccgcg accgcaccgc
     1621 agccctgctc gaagccgagg aaaatctgcg ccaggcgcag aagatggagg cggtcggcca
     1681 gctcaccggc ggcatcgcgc atgatttcaa caatctgctc accgccatca tgggcagcct
     1741 ggaacggctg gaagcccacc tgccccatgc cacccctcaa gaactggccc cctatattgc
     1801 cgccgcgcgc gacgcctcca accgcgccgc caacctcacc aaccggctgc tcgccttctc
     1861 ccgccgccag ccgctcagcc cgcgcgccac agacatcaac gggctcgtcg ccagcatgga
     1921 ggagctgata agccgcacca tcagccccgc tatccggctc agcattgccc cctgccccag
     1981 cctgcatgcc accatggtgg accccaacca gcttgagcac gctttgctca atctctgcat
     2041 caacgcgtcg gacgccatgc caggcggcgg cgagctcgat atcagcaccg ccaatatcag
     2101 cttcacggcc gagcagcccc gcccctccgg cctcaaaccg ggcgattacg tcgccctcac
     2161 cgtggcagat accggcaccg gtatggcgcc cgaggtgctg gcccgcgtgt tcgagccctt
     2221 cttcaccacc aagccactgg gcaagggcac cgggctcggc ctgtccatga tctacggctt
     2281 tgcccgccag tccggcggcc atgccgagat cagctcccgc atcgggatgg gcacatccgt
     2341 caccctttat ctgccgcgcc attgcggccg ggtagacgag caactctccc tccccgcccc
     2401 agccagccag ccagccgcgc ggctcggcga aaccatcctg ctggtggatg acgaacccag
     2461 catccggctg ctcgccgcgg aagtgctgga ggagcagggc tataccgtgc atcaggccgc
     2521 caatgccgag agcgccttgc agattttgcg tgagggtccg tccatcgaca tcctcatcgc
     2581 cgatctcggc ctgcccggcc tcaatggaag ccagctcgcc gaaaccggcc gcaccttgcg
     2641 ccccgcgatg aaaatcctct tcatcaccgg ctatggcgag cgcgctctgc gccccgccgc
     2701 cctgcccatt cccgcccaca cgctgctcag caaacccttc ccca
//
LOCUS       DASQCV010000352         3783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1404820, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000352 DASQCV010000000
VERSION     DASQCV010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3783
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1404820"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            697..>3783
                     /gene="metH"
                     /locus_tag="VEQ16_05315"
     CDS             697..>3783
                     /gene="metH"
                     /locus_tag="VEQ16_05315"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HYP63284.1"
                     /translation="MAPPHLLEALGKNVLLCDGGMGSRVQAITLDTDKDFWGKENCTE
                     VLNLSRPDIVRDIHRGYYAAGSDMVQTNSFGGSPITLGEFDLQDKAFEINKIAGELAR
                     EAAESFADGRMRWVVGSIGPGTKLPTLGNIAYDPLEEALFLQCQGLIAGGVDALLIET
                     CQDTLQIKAAVNGAKRAKALAKSDIPIFVQVTVETTGTLLVGPDIAAAATVIQALDVP
                     LMGLNCATGPQEMAEHVRYLSRNWPGKISVQPNAGLPELVDGKTHYPLGAGEMAGWVE
                     RFVVEDGVNLIGGCCGTSIPHITALDAMLKKLGQPRPAPVPRKFHWVPSVASLYGSTP
                     LRQEQSYFSIGERCNANGSKKWRELQETHDWDGCVAMGREQVAEASNALDICTAFVGR
                     DEMAEMNEVITRFTAAVNAPLVIDSTETPVIEAALKRHGGKPIINSINFEDGEHHAHE
                     RLTLAKKFGAAVIALTIDEVGMAKEPEQKLRIAERLVDFACNKYGLAQSDLLIDPLTF
                     TIATGNEDDRKLGLWTLQGIKAIRDKFPDIQIILGLSNISFGLNPAARAVLNSVFLDH
                     AVQAGMTGAIVHVSKIRPLHLIDPEEVKVCEDLIFDRRAEGYDPLQKLLEMFAGRKAA
                     DAGAKKRADTVEGRLKDRIVDGDRKGLAEELDEALKTYKPLDIINNILLDGMKVVGEL
                     FGAGKMQLPFVLQSAETMKAAVAHLEPLMERIEGEERGTIVLATVKGDVHDIGKNLVD
                     IILTNNGYRVVNLGIKVPLAEMVAAVREHKAHAIGMSGLLVKSTVVMRENLEEMSRQG
                     LEIPVLLGGAALTRNYVEDDCVAAYGSGRVAYARDAFDGLHLMDKVTGNAFDEYLAAI
                     QAKRAGKARNTKRTLGQADEKAFAPVDVLEVQKRRRRLNAEEPGFTPPFWGAKIIEAA
                     PKAVVPFINERSLFQFQWGFRKQGKSLEDFLAWARQELRPVMKRMLEICEADAILKPQ
                     AVYGYWKAAGQGNDLILFAEDGTTEVARFTLPRQPKQDGECIADFFPDVEDGRGVIG"
BASE COUNT          752 a         1126 c         1195 g          710 t
ORIGIN      
        1 ggcgatgatc agcgccaaaa ggatgggcgg catgatgccg gccttctcca ccttggcgtc
       61 gggcgcgcga tagatttcgt caagacgacg ttcttcccac tccatatcgc tctgcgcgct
      121 gaagtgacgg ccgctccggt cctgaagaaa tcgtaaaaac aactcgcgca tgtgcttaac
      181 ccagactttc tgcacccctg ccttccgcac tcttgcaggc tgcaccctac cggtacttaa
      241 cctgggctct agcggattcg gaacaaattt acaattaaat ctgaagccaa tccacaaacc
      301 ctaaattacc gtaacatttt cgcctcaccc cgccaagcgg aatctggcgc tgcacaagat
      361 gtcttgcgcc aaggcggcct cgacgtccag cctgcccgcc gggccggcga gcaccaacaa
      421 gcggttgaaa aagggggcgt ttcccattgc gcgtgcgcgg aacgctgccg atagcgccgc
      481 cgcggctggg ctgcgcgcca cgcagcagga gcagcccggc gcatggccgg acgttccggc
      541 atcaaagcgc agtacatggc ctgcttcggg gggctgtaaa ccttcctgca gcaaaaccat
      601 gtcatccgcg cggggctgct gcccgaaaat cactggaata cgtgcatctt gttccatgaa
      661 ttggacatgg ggatggcacg gtgtatctga caagtcatgg cacctcctca tcttctcgaa
      721 gccctcggca aaaatgttct gctctgcgac ggcggcatgg gttcgcgcgt ccaggccatc
      781 accttggaca cggacaagga tttctggggc aaggagaatt gtaccgaggt gctcaacctc
      841 tcccgcccgg acatcgtgcg cgacattcat cgcggttatt acgcggcggg ctccgacatg
      901 gtgcagacta acagttttgg cggctcgccg atcacgctgg gtgaattcga ccttcaggac
      961 aaggcgttcg agatcaataa gatagcgggt gagctggcgc gtgaggcggc ggagagcttt
     1021 gccgacggac ggatgcgctg ggtggtcggt tccatcgggc cggggacgaa actgccgacc
     1081 ctgggcaata tcgcctacga cccgctggaa gaggctttgt tcctgcagtg ccaggggctc
     1141 atcgccggcg gggttgacgc gctattgatc gagacctgcc aggacacgtt gcaaatcaag
     1201 gctgcggtga atggcgccaa gcgcgccaag gcgctggcca agagtgacat tcccattttc
     1261 gtacaggtga cggtggagac caccggcacg cttcttgttg ggccggacat cgctgccgcc
     1321 gccacggtca tccaggcgct ggacgtgccg ctgatggggc tgaactgcgc caccggcccg
     1381 caggagatgg ccgagcatgt gcgctatctc tctcgcaact ggcctggcaa gatttccgtg
     1441 cagcccaacg ctggcctgcc ggagttggtg gatggcaaga cccattaccc gctcggcgcc
     1501 ggggagatgg ccggctgggt cgaacgtttc gtcgtcgagg acggggtgaa tctcattggc
     1561 ggctgctgcg gcacctccat cccgcacatt accgcgctcg atgcgatgct gaaaaaactg
     1621 ggccagccgc gccccgcacc cgtgccacgc aagtttcact gggttccgtc cgttgccagc
     1681 ctgtatggtt cgacaccgtt gcggcaggag cagagctact tctcgatcgg cgagcgctgc
     1741 aatgccaatg gttcaaaaaa atggcgcgaa ttgcaggaaa cccacgattg ggacggctgc
     1801 gtggccatgg ggcgggaaca agtggcggag gcctccaacg cgctcgatat ctgcaccgcc
     1861 tttgtcggcc gtgacgagat ggcggagatg aacgaggtta tcacccgctt caccgccgcg
     1921 gtgaatgcgc ctctcgtcat cgattccacg gaaaccccgg tcatcgaggc ggcgttgaag
     1981 cgccatggcg gcaagccgat catcaattcg atcaatttcg aggatggcga gcatcatgcc
     2041 catgagcggc tgacgctggc caagaaattc ggcgccgcgg tcatcgctct cacgatcgac
     2101 gaggtcggga tggccaagga gcccgagcag aagctgcgca ttgccgagcg gctggttgat
     2161 ttcgcctgca acaaatacgg gctggcgcag agcgatctct tgatcgaccc gctgaccttc
     2221 accatcgcca ccggcaatga ggatgaccgc aagctcggcc tgtggacgct gcaggggatc
     2281 aaggcgatcc gtgacaagtt tccggacatc cagatcattc tcggcctgtc caatatctct
     2341 ttcggcctca acccggccgc ccgcgccgtg ctgaactcgg tctttctcga tcatgcggta
     2401 caggccggca tgaccggcgc tattgtccat gtcagcaaaa tccgcccgct gcacctcatc
     2461 gatcccgaag aagtgaaggt ctgcgaagat ctcatcttcg accgccgcgc cgagggctat
     2521 gatccgctgc agaagctgct ggagatgttt gccggccgca aggccgccga tgccggtgcc
     2581 aagaagcgcg ccgatacggt ggaggggcgg ctgaaagatc gcatcgtcga tggcgaccgc
     2641 aaaggccttg cggaggagct ggacgaggcg ctgaaaacct acaagccgct ggatatcatc
     2701 aataacatcc tgctcgacgg gatgaaggta gtgggcgaac tattcggcgc cggcaagatg
     2761 cagctgccct tcgtgctgca atcggccgag acgatgaagg ctgccgtggc gcatctggag
     2821 ccgttgatgg agcgcatcga aggcgaggag cgcggtacca tcgtgctcgc caccgtgaag
     2881 ggcgatgtgc atgatatcgg caagaatctc gtcgacatca ttctcaccaa taatggctac
     2941 cgggttgtca atctcggcat caaagttccc ttggccgaga tggttgcggc ggtccgcgag
     3001 cataaggccc atgccattgg catgtccggc ctgttggtga aatccactgt ggtgatgcgc
     3061 gagaatctcg aggaaatgtc gcgccagggg ctcgagatcc cggtcctgtt gggtggagct
     3121 gcgttgacgc gcaattacgt ggaggatgac tgcgtggccg cctatggctc aggccgcgtc
     3181 gcctatgcgc gcgacgcgtt cgacgggctg caccttatgg ataaggtgac gggcaacgcg
     3241 ttcgacgagt atcttgccgc catccaggcc aagcgggccg gcaaggcgcg caataccaag
     3301 cgtacgctcg gccaggccga cgagaaggct ttcgcgccgg tggatgtcct ggaggtgcaa
     3361 aagcgccgcc gccgcctcaa tgcggaagag ccagggttca ccccgccttt ctggggcgcg
     3421 aaaatcatcg aggcggcgcc gaaagctgtg gtaccgttca tcaatgaacg ctcactcttc
     3481 cagttccagt gggggttccg caagcagggc aagagcctgg aggatttcct ggcctgggcc
     3541 cgtcaggagt tgcggccggt catgaagcgc atgctcgaga tctgcgaggc ggacgccatc
     3601 ctcaagccgc aggccgtcta tggatattgg aaggcggcgg gccaggggaa tgatctgatc
     3661 ctgttcgctg aggacggcac taccgaagtc gcccgcttta ccctgccgcg ccagccgaag
     3721 caggacggag aatgcattgc cgatttcttt cccgatgtgg aggatgggcg cggcgtgatc
     3781 ggg
//
LOCUS       DASQCV010000353         1751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_78051, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000353 DASQCV010000000
VERSION     DASQCV010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78051"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1751
                     /gene="acnA"
                     /locus_tag="VEQ16_05320"
     CDS             <1..>1751
                     /gene="acnA"
                     /locus_tag="VEQ16_05320"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HYP63285.1"
                     /translation="ARVVCHDILGQTALVDLAGLRDAIADMGGDPAKVNPVVPVQLIV
                     DHSLAVEHAGFEKDAFALNRAIEDRRNEDRFHFIDWTKDAFDNMDVVPAGNGIMHQIN
                     LERMSPVIYTKDNVAFPDTLVGTDSHTPHVDALGVIAIGVGGLEAENVMLGRASWMRL
                     PDIIGVELSGRRQPGITATDIVLSLTEFLRKEKVVGAYLEFYGEGSSSLTLGDRATIS
                     NMAPEYGATAAMFSIDQQTIEYLRLTGREDAQVKLVENYARTAGLWSDSLAKVEYERV
                     LKFDLSSVVRTLAGPSNPHKRLPVSDLASRGISAPWTETPGEMPDGAVIIAAITSCTN
                     TSNPRNVIAAGLLARNANRAGLVRKPWVKSSLAPGSKAVALYLDEAGLTSELEKLGFG
                     IVAFACTTCNGMSGALDPKIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPP
                     LVVAYAIAGTIRFDIEQDVLGVDANGKEIRLKDLWPSDEEIDAVVGAAVKPEQFRNVY
                     EPMFGKRGARKAVSPLYDWRPQSTYIRRPPYWEGALAGERTLKGLRPLAVLPDNITTD
                     HLSPSNAILADSAAGEY"
BASE COUNT          313 a          531 c          567 g          340 t
ORIGIN      
        1 ggcgcgcgtg gtctgtcatg acattctcgg ccagaccgcg ctggttgacc ttgctggtct
       61 gcgcgatgcg attgccgata tgggcggcga cccggcgaag gtaaatcctg ttgtgccggt
      121 acagctgatt gtcgaccatt ctctggccgt ggagcatgcc gggtttgaga aggatgcgtt
      181 cgcgctcaac cgcgccatcg aggaccgccg caacgaggac cgtttccatt tcatcgattg
      241 gaccaaggac gcgtttgaca acatggatgt ggtgccggca ggcaacggca tcatgcacca
      301 gatcaatctg gagcgcatgt cgccggtgat ctacaccaag gataatgtgg ccttccctga
      361 cacgctggtg ggcacggaca gccatacccc ccatgtggat gcgctgggtg ttattgcgat
      421 tggtgtcggc gggctggaag ccgaaaacgt gatgctcggc cgcgcctcct ggatgcgcct
      481 gccggatatt atcggcgtgg agctgagcgg gcgccgccag cctggcatca ccgcgacgga
      541 catcgtgttg tctctgactg aattcctgcg caaggaaaaa gttgttggcg cgtacctgga
      601 gttttatggc gagggttcgt ccagcctgac gctgggcgac cgcgccacta tctccaacat
      661 ggcgccggaa tatggcgcga cggcggcgat gttctctatt gatcagcaga cgatcgaata
      721 tctccgcctc accggccgcg aggacgcgca ggtgaagctg gtggagaatt acgcacgcac
      781 tgccgggctg tggtcggaca gcctcgccaa ggtggaatat gagcgtgtgc tgaaattcga
      841 tctttcctcc gtggtgcgta cgctggctgg tccgtccaac ccgcataagc gcctgccggt
      901 ttcggacctt gccagccgcg gcatttccgc accctggacc gagacgccgg gcgagatgcc
      961 ggatggcgcg gtgatcatcg ccgccatcac gagctgcacc aacacctcca atccgcgcaa
     1021 cgtgattgcc gcagggctgc tggcgcgcaa tgccaaccgc gcgggccttg tgcgcaagcc
     1081 gtgggtgaaa tcgtcgctgg cgcctggctc gaaggcggtg gcgctgtatc tggacgaagc
     1141 tgggctgacc tccgagctgg aaaaactcgg cttcggcatt gtggcttttg cctgcaccac
     1201 ctgtaacggc atgtccggcg cgctggatcc gaagatccag caggagatca tcgatcgcga
     1261 tctctacgcg acggctgtgc tctcgggcaa ccgcaacttc gatggccgta tccaccccta
     1321 tgcgaaacag gccttccttg cctcgccgcc tttggtggtg gcctatgcca tcgccggtac
     1381 catccggttc gatatcgagc aggatgtgct gggcgtggat gccaacggca aggaaatccg
     1441 cctgaaagat ctctggccgt cggatgagga aatcgacgcg gtggtgggcg ccgcggtgaa
     1501 gccggagcag ttccgcaacg tgtatgagcc gatgttcggc aagcgcggtg cgcgcaaggc
     1561 ggtgagcccg ctttacgatt ggcgcccgca gagcacctat atccgccgcc cgccctattg
     1621 ggagggggcg ctggccggtg agcgcacgct gaaaggcctg cggccgctgg cggtgctgcc
     1681 cgacaatatc accaccgacc atttgtcgcc ctccaacgcc atcctggccg acagcgccgc
     1741 cggcgaatat c
//
LOCUS       DASQCV010000354         1651 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1736806, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000354 DASQCV010000000
VERSION     DASQCV010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1736806"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..810)
                     /locus_tag="VEQ16_05325"
     CDS             complement(<1..810)
                     /locus_tag="VEQ16_05325"
                     /inference="COORDINATES: protein motif:HMM:NF015038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HYP63286.1"
                     /translation="MKLDPETIDVSMEELKRVVDGACHQTLNDEDHRKLRGAVETLGE
                     MARMLADKDATLRELRQMLLKPASTEKTRAVLERAGILPQPNGKPSEPAAAEKRKRKG
                     HGRKPASAFVGALKVEVKHPTLQAGDRCPECGKGKVYPLREPAVRVRIVGQAPVQATV
                     YELARLRCNLCQEVYEAPAPEQMGETKRDETAASMVAVLKYGSGVPFYRLAGLQANLG
                     IPLPPSTQWDMGAHAAAALEPVYEELIRQAAQGQVRYNDDTAMRILALARET"
     gene            complement(819..>1651)
                     /locus_tag="VEQ16_05330"
     CDS             complement(819..>1651)
                     /locus_tag="VEQ16_05330"
                     /inference="COORDINATES: protein motif:HMM:NF025596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Druantia anti-phage system protein DruA"
                     /protein_id="HYP63287.1"
                     /translation="GEVGFIRELILAHPHASRYELSRRLCEAWHWKQANGVPRDMVCR
                     GLLLMLDRAGAIELPAVRRPPNPLLLRCRPEPVVPDNRPVRGPLREILPLEIEQVRQS
                     EQEPLFNSLMEQYHYLRYQHPVGEGLKYLVKTRGQVIACLAWSSAPRHIGSRDRFIGW
                     DARARRRNIHLIAYNTRFLILPWVQPAPHLASHILGQMARQVSRDWQRWYCHPIYLLE
                     TFVDPERFAGTCYRAANWMVVGKTTGRGKDSTSDRPNRSLKLVLVRPLHQRFRELLRQ
                     "
BASE COUNT          268 a          592 c          457 g          334 t
ORIGIN      
        1 cgtctcccgc gccagcgcca ggatgcgcat cgccgtgtcg tcgttgtacc gcacctggcc
       61 ttgcgccgcc tgccggatta gttcttcata caccggctcg agggctgccg ccgcgtgggc
      121 ccccatgtcc cattgcgtcg agggcggcag gggaatgccg aggttggcct gcagccctgc
      181 caatcgatag aagggcacac cgctcccata tttcaacacc gccaccatgc tcgccgccgt
      241 ctcgtcccgt ttggtctcgc ccatctgctc tggcgccggt gcctcataga cttcctggca
      301 aaggttgcag cgcagtcgcg ccagctcgta tacggtcgcc tggaccggcg cttggcccac
      361 gattcgcacg cgcaccgctg gttctcttag tgggtatacc tttcccttgc cgcactccgg
      421 gcacctatcg cccgcctgca gcgtgggatg tttcacctcc accttgaggg ctcctacaaa
      481 cgcactcgcc ggcttgcgcc catgcccctt gcgcttcctc ttttctgccg ccgctggctc
      541 actcggtttc ccgttgggtt gcggcaggat tcccgcacgc tccagcaccg cgcgtgtttt
      601 ctccgtgctg gccggtttca gcaacatctg ccgcagctcg cgcagcgtgg cgtccttatc
      661 ggccagcatc cgtgccatct cccccagcgt ttccaccgct cctctcaact tgcggtgatc
      721 ctcgtcgttc agcgtctgat gacatgcgcc atccaccact cttttcaatt cttccatgct
      781 gacatcaatg gtttccgggt ccagcttcat ggcttcctct attgcctcaa caactcccgg
      841 aaacgctggt gcaaaggccg caccaggacg agtttgagag accggtttgg ccggtcgctg
      901 gtggagtcct taccccgccc cgtggtcttc cccaccacca tccaattcgc cgcccgataa
      961 caggtcccgg caaaccgttc cgggtccacg aaggtctcta ataaatagat aggatggcaa
     1021 taccaccgct gccagtcgcg cgacacctgg cgcgccatct gccccaggat atgcgaagcc
     1081 aaatgcggcg ctggttgcac ccatggcaga atcagaaacc gcgtattgta ggcgatcaga
     1141 tggatgttgc gccggcgcgc cctggcgtcc cagccgatga accggtcacg gctgcctata
     1201 tgccgcggtg cgctcgacca agccagacac gcgatcacct gaccgcgtgt cttgaccaag
     1261 tatttcagcc cctcgcccac tggatgttgg taacgaagat agtggtactg ttccatcagg
     1321 ctgttgaaca gcggctcttg ctcgctctgc cgcacctgct cgatctccag cggcaggatc
     1381 tcgcgcaacg gccctcgcac cgggcggttg tcgggcacca ccggctccgg tcggcatcgc
     1441 agcaggagcg ggttcggcgg acgccgcacc gcgggcaact cgatcgcacc cgcccggtcg
     1501 agcatcagca gcaagccgcg gcacaccatg tcgcgcggca cgccgttggc ttgcttccag
     1561 tgccaggcct cacacagccg ccgcgacaac tcatagcggc tggcatgggg atgcgcgagg
     1621 atcaactccc gaatgaagcc gacctcgccg a
//
LOCUS       DASQCV010000355         2686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3063311, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000355 DASQCV010000000
VERSION     DASQCV010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3063311"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1330
                     /locus_tag="VEQ16_05335"
     CDS             <1..1330
                     /locus_tag="VEQ16_05335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HYP63288.1"
                     /translation="DNPDQRISEDLRDFTLNTLALGIDFITNLVTLFSFIFVLYSVSG
                     IIHPFGITIHGYLVWVALFYSIFGTIITQLIGRKLITLAFNQQRLEANFRFRLVRVRE
                     NTEAIALSHGEGDEHTALTHSFKDVRDNFWAIMGRTVPLNFFTNGFAQIANIFPLVVI
                     LPRYFAKQIGFGALAQIPIAFGQVQGAFSWFVTNYPNLVTWRATVSRLYGFREAMDAA
                     HAAAVAGPRLGEPGAALALNNLTLTLPNGRKLMENASLTLPPGEKIILTGPSGAGKST
                     LFRAIAGIWPFGSGSITPPSGSLLFLPQKPYFPLGSLKRSLAYPYPEESVNDEDALNA
                     LNALGLGQLASHLHEAGNWGLILSGGEQQRLSLARALIAKPDWLFLDEATSALDAPLA
                     AHVQATLAKRLPNTTILAVSHHDAPAGRHLALEAGVLAPALGVPQGASPP"
     gene            complement(1811..2128)
                     /locus_tag="VEQ16_05340"
                     /pseudo
     CDS             complement(1811..2128)
                     /locus_tag="VEQ16_05340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012554870.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
     gene            complement(2152..2451)
                     /locus_tag="VEQ16_05345"
     CDS             complement(2152..2451)
                     /locus_tag="VEQ16_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007004626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HYP63289.1"
                     /translation="MNTLTRAQLTEAIYATVGLSRHESADLLELVLDRIAQALEVGKS
                     VKISGFGTFSVRQKGRRIGRNPKTGVEVPILPRRVLVFRPSQMLRDAVNEPVSHS"
     gene            complement(2596..>2686)
                     /locus_tag="VEQ16_05350"
     CDS             complement(2596..>2686)
                     /locus_tag="VEQ16_05350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002729776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] synthase III
                     C-terminal domain-containing protein"
                     /protein_id="HYP63290.1"
                     /translation="SDGRIKPGQLILLEALGGGLTWGSALVRL"
BASE COUNT          453 a          916 c          783 g          534 t
ORIGIN      
        1 cgacaacccg gaccagcgta tctccgagga tttgcgtgac ttcacgctca acacgctggc
       61 actcggcatc gatttcatca ccaatctggt gacgctcttc agcttcatct tcgtgctcta
      121 ttccgtctcc ggcatcattc atccgttcgg catcaccatc catggctatc tcgtctgggt
      181 ggctttgttc tactccatat tcggcaccat catcacccag ctcatcggcc gcaagctgat
      241 cacgctcgcc ttcaaccagc agcggctgga ggcgaatttc cgcttccgcc tggtgcgcgt
      301 gcgcgagaat acggaggcca ttgccctgtc ccatggcgag ggggacgaac acacggcgct
      361 cacccatagt ttcaaggatg tgcgcgataa tttctgggcc atcatgggcc ggacagtgcc
      421 gctgaatttc ttcaccaacg ggttcgcgca aatcgccaat atcttcccgc tggtcgtcat
      481 cctgccgcgc tatttcgcca agcagatcgg cttcggcgcg ctggcgcaga ttcccatcgc
      541 ctttggccag gtgcaggggg cgttctcctg gtttgtcacg aactacccca acctcgtcac
      601 ctggcgcgct accgtgtcgc gtctctacgg gttccgcgag gccatggacg ccgcccatgc
      661 cgccgccgtg gcggggccgc gccttggaga gccgggtgcc gccctcgccc tcaataacct
      721 cactctcact ttgcccaatg gccgcaagct gatggagaat gccagcctga ccctgccgcc
      781 gggcgagaag atcatcctca ccggcccctc gggcgccggg aagtcaacct tgttccgtgc
      841 catcgccggc atctggccat tcggctccgg ctccatcacc ccacccagcg gctcactgct
      901 tttcctgccg caaaagccct atttcccgct cggctcgctc aagcgcagcc tcgcctaccc
      961 gtaccccgag gaaagtgtca acgacgagga cgctctcaac gcactcaacg ccctcggcct
     1021 cggccagctc gcctcgcatc tgcacgaggc cggtaattgg gggctcatcc tctctggcgg
     1081 cgagcagcag cgcctctccc tcgcccgcgc cctcatcgcc aagccggact ggctgttcct
     1141 cgacgaagcc acctcagccc tcgacgcgcc actcgccgcc catgtccagg ccaccctggc
     1201 caagcgcctg cccaacacca ccatcctggc cgtctcccac cacgacgccc ccgccggtcg
     1261 gcacctggcg ctggaggctg gggttctggc tcctgcgttg ggtgtgccgc agggggcttc
     1321 gcctccctga ctccccggta cgggccaagc ccctggacct cgctcaattc ggcataaaaa
     1381 gaggcctccc agcacgtgtg ttccacgggc acgggaggcc tctttttatg ccgggcgggg
     1441 gtctgggggc ctatggcccc cagcgggggt gcaggaggcg gcgccccctg cggcacattc
     1501 tacgaaacga acctcaatcc agcatccggc gcagctcctc aagggcgccg agggtttcgg
     1561 tcaggaggat gcgcaggcgt tcggtttcgg ggtcgctctt gggccgcaga cgcagctgag
     1621 cggtgcgggg ctgggcggtg cctggaagcg ggtcgggttc gggcggcagc aggcccggca
     1681 tgggcagctg cggcaagttg ggggctggct ttttcacggc atgctcctcc atctccatca
     1741 ccccgcgctc ggccaggacc ggggcgcgtt cctcgccatt ggcggggggg atgttgtcgt
     1801 gcagggcgcc accgccttcg cgcagcaacc gctgcacgcc cttgatggtg tagccatgtg
     1861 tataaagcag gtcggcgacg cggcgcagca gttgcacgtc ctcggggcgg taatagcgcc
     1921 gcccgccgcc gcgcttcagc ggccgcactt gcgggaattt ggtttcccag aagcgcagca
     1981 catgctgggg cacgtgcagc tcgtctgcaa cttcggagat ggtccggaac gcgtcggcgg
     2041 ttttccgggg gcggacccgg ctggcgtcag cattcagacc gtcttcgtcc tccgcgttga
     2101 aatcttcctc atcaaccatg cggaccatca agacttccgt aatttattgt ttcaggagtg
     2161 ggagaccggc tcgttcacgg cgtcgcgaag catctggctg ggcctgaaca ccagcacacg
     2221 gcgcggcagg attgggactt ccaccccggt tttcgggttg cggccgatgc gccggccttt
     2281 ctggcgcact gaaaaagtgc cgaacccgct gattttaaca gatttaccaa cttcaagcgc
     2341 ctgagcgatc cgatccagga ccagctcaag cagatccgcc gattcgtggc gggacaggcc
     2401 tactgtggcg tagatcgcct cggtcagctg agcgcgtgtc aaagtgttca ttttacaaga
     2461 ttagcacgat atccttgcaa atcaacaaga acgcacgcga atcgcgacag attcgtcaag
     2521 cttttcctta atcacctgaa tgtgaagtct ttttttaaag gaccggaacg gtttccggtc
     2581 cttccgaagg cagaattaca gccgcacgag ggccgatccc catgtcaacc ccccgccgag
     2641 cgcttccagc agaattaatt gaccgggctt gatgcgtccg tcgctg
//
LOCUS       DASQCV010000356         2473 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2730257, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000356 DASQCV010000000
VERSION     DASQCV010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2730257"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..253
                     /gene="pgk"
                     /locus_tag="VEQ16_05355"
     CDS             <1..253
                     /gene="pgk"
                     /locus_tag="VEQ16_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HYP63291.1"
                     /translation="GAFETKPFDAATNVLAAAIAKATKDGKIISVGGGGDTVSALKLA
                     GVHEDLTYLSSAGGAFLEWMEGKILPGVIALSKDLSNLG"
     gene            complement(329..550)
                     /locus_tag="VEQ16_05360"
     CDS             complement(329..550)
                     /locus_tag="VEQ16_05360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63292.1"
                     /translation="MIRRILTTALTLTALAAPALAATQTTTTTPAKPAATAPAKAPAK
                     HATATKKTTAHTVAHKAPVKKPTVTKTPA"
     gene            complement(731..883)
                     /gene="yacG"
                     /locus_tag="VEQ16_05365"
     CDS             complement(731..883)
                     /gene="yacG"
                     /locus_tag="VEQ16_05365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007003969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HYP63293.1"
                     /translation="MKCPICGKKAHPEHKPFCSKRCADIDLGRWLREDYAIPQQVAED
                     EDEPKT"
     gene            complement(880..1734)
                     /locus_tag="VEQ16_05370"
     CDS             complement(880..1734)
                     /locus_tag="VEQ16_05370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HYP63294.1"
                     /translation="MIAASRRGEMVRVAMLRGDVLTEFCSWDLAAPAMVGDVYTGRVD
                     AVMPGLAGRFVALGSDLSGFLPDSAGGKRLSIGNYAAFRVTRAAQNDKGPRLVLVDEP
                     SGDTPGLLRRGPGPLRELAADHPGENILIDDYALMADLRPDLEGRMRYSAQAFDPVLE
                     DEVAALAEPVAALPHGAKLHITLAPAATLLDVDAAGASSMAPLALNLAIIPEICRQIR
                     LRNLSGGILIDFAGLKPAARAKLATPLRDALAHDPLRPDFLGFSHLGLAELTRRRIHP
                     PLHEILRP"
     gene            complement(1731..2318)
                     /locus_tag="VEQ16_05375"
     CDS             complement(1731..2318)
                     /locus_tag="VEQ16_05375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007399873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030428 - cell septum [Evidence IEA];
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family nucleotide pyrophosphatase"
                     /protein_id="HYP63295.1"
                     /translation="MQVKPACAGAKFQVTLASASPRRLELLRQIGIEPARIFAPDIDE
                     TPLQGETPRAYAKRLALAKLGPADENFTIAADTVVSAGARILHKTATKEEAERYLRLL
                     SGRRHKVFTGLAVRSPDGRVASRVIASVVGFARLDEVQIRDYLASFEWEGKAGGYAIQ
                     GRAAAFIDFVSGSYSSVVGLPLHETAALLRGLGWQ"
     gene            complement(2375..>2473)
                     /locus_tag="VEQ16_05380"
     CDS             complement(2375..>2473)
                     /locus_tag="VEQ16_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HYP63296.1"
                     /translation="RKNRIRVLAGDRVNVEMTPYDLTKGRITFRFK"
BASE COUNT          433 a          769 c          832 g          439 t
ORIGIN      
        1 cggcgccttc gagaccaagc cgttcgacgc cgccaccaac gttctggccg cggccatcgc
       61 caaagccacc aaggacggca agatcatctc ggtcggcggc ggcggcgata ccgtctcggc
      121 cctgaaactg gccggcgtgc atgaggacct gacctacctc tcctccgccg gcggcgcctt
      181 cctggaatgg atggagggga agatcctgcc gggggttatc gctttgagca aggatttgtc
      241 gaatttggga taaaaggcta ggggctctgc ccctggcctt ccaaaataaa aaagggggcc
      301 aaccggcccc ttttttcctg gcccgtaatt aggccggggt cttggtcacg gtcggcttct
      361 tcaccggggc cttgtgggca acggtgtgag cggtggtctt cttggtggcg gtggcgtgct
      421 tggccggggc cttcgccggg gcggtggcag cgggcttcgc cggggtcgtg gtggtggtct
      481 gggtggcggc cagggccgga gcggccaggg cggtgagggt cagagcggtc gtgagaatac
      541 ggcgaatcat cagatttttc cttgttcgta ggtctttgaa gcgtctctgt ttcttccggc
      601 gccttggtcg gcgccgtgcc cgagtggcct cagcgcctta cgcctcgcac gaggggcgtg
      661 caagagcgtc acaatgattt aatggcctga tttcttaacg gaaaatggaa atgccggccg
      721 ccggttgagg tcaggtcttc ggctcgtcct cgtcctcggc aacttgctga ggaatcgcat
      781 aatcctcgcg cagccagcgg ccgagatcga tgtccgcgca gcgtttcgag cagaaaggtt
      841 tatgttcggg atgggctttt ttgccgcaga tggggcattt catggtcgca gaatctcatg
      901 cagaggcggg tggatgcgcc gccgggtcag ctcggcgagg ccgagatggg agaagccgag
      961 aaaatcgggg cggagaggat catgcgcaag ggcgtcgcgc aagggggttg ccagttttgc
     1021 ccgtgcggcg ggttttagcc cggcgaaatc gatgaggatg ccgccggaga ggttgcggag
     1081 ccggatctgc cggcagattt ccgggatgat ggccaggttg agcgccagcg gggccatgga
     1141 cgaggcgccg gcggcgtcca catccagcag ggtggcggcc ggggccaggg tgatatgcag
     1201 tttcgcgcca tggggcaggg cggccaccgg ctcggccagg gccgccacct catcctccag
     1261 caccggatca aaagcctggg cggaatagcg cattcgccct tcgagatcag ggcgtaaatc
     1321 ggccatcagc gcatagtcat caatgagaat gttctcgccc ggatggtccg ccgccaactc
     1381 gcgcagaggc cccggcccgc gccgcagcag gcccggcgtg tcaccgcttg gctcgtccac
     1441 cagcaccagc ctcggcccct tatcgttctg cgccgcgcgg gtgacgcgga aggcggcata
     1501 attgccgatg gaaagtctct tgccccccgc gctgtccggc aaaaacccag ataaatcaga
     1561 ccccaaggct acaaagcgcc cggccagccc cggcatcacc gcatccacac gtccggtata
     1621 aacatcgccc accatggccg gcgcggctaa atcccaggag caaaattcgg tcagcacgtc
     1681 gccgcgcagc atggccactc gcaccatctc accgcggcgg gaggcggcga tcattgccag
     1741 cccagcccgc gcagcagtgc ggcggtttcg tgcaaaggca gcccgaccac gctggaatag
     1801 gagccggaga caaaatcgat gaaggcggcg gcgcggccct ggatggcata gcccccggcc
     1861 ttgccctccc attcgaagct ggccaggtag tcgcggattt gcacctcgtc caggcgcgcg
     1921 aatccgacca ctgaggcgat aacacggctg gccactcggc catcggggct gcgcacggca
     1981 agcccggtaa aaaccttgtg acgccggccc gagagcagcc ttagatagcg ctccgcctcc
     2041 tccttcgtgg ccgtcttgtg cagaatccgc gccccggcgc tcaccaccgt gtcggccgcg
     2101 atggtaaaat tctcatccgc cgggcccagc ttggccaacg ccaggcgctt ggcataggcg
     2161 cgcggggtct cgccttggag cggtgtctcg tcgatatcgg gggcaaaaat gcgggccggt
     2221 tctatgccga tctgccgcag caattccagc cggcgcgggc tggcggaggc aagcgtgacc
     2281 tggaatttcg caccggcgca ggccggcttt acttgcatcg ccccggtggc ggacgccggc
     2341 attatttaaa gcgacccgcc ggcggacgcc ggcattactt gaaacggaac gtgatccggc
     2401 ccttggtcag atcatagggg gtcatctcga cattcacccg gtcgccagcc agcacgcgga
     2461 tgcggttctt gcg
//
LOCUS       DASQCV010000357         3175 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2067393, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000357 DASQCV010000000
VERSION     DASQCV010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3175
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2067393"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1858
                     /locus_tag="VEQ16_05385"
     CDS             <1..1858
                     /locus_tag="VEQ16_05385"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HYP63297.1"
                     /translation="DFRSSMITVPLLEKNNLTGKPIDYGALARHLNEIRAKYDQQGVT
                     VRITGFAMVVGDMINGIDKVLTFFAVSLVIAASFLFWYTRCVRSTLLVVFASLTAVTW
                     QMGLLTVLGFDLTPYSVLVPFLVFAIGMSHGAQKMNGVMQDIGRGTHPLIAARYTFRR
                     LFLAGFAALMCDMTSFAVLMTIRIVAIQQLALIACIGVGVLVITNLMMLPTMLSFTGV
                     SRTAALRSLKSTPAPGMPRPRHPVWDFLDRFTTRNYAIGAIACMVIIGVVGWYVGRGV
                     QIGDLQPGAPELRQASQYNRDNAFIVSNFTAGSDTYIVFTDTPPYHCVDYDMLATMDR
                     LQWQLDQLPIVESSSSAASFSDNMFMMQNEGAPKWYGVEPTDGVLGSFARNMPDGLVN
                     FACTFAPIYISLTDHRAKTLETITNLVENFITNPANHGPYFKMSLAGGNAGIEAATNI
                     VIQQANRNMLLLVYAVVIIFCLITFRSWRAVICAVVPLTITSILAQALMVWLHIGVKV
                     ATLPVTALGVGIGVDYALYVLSIMLKNLRQGASLSEAYHATLLFTGRVVILTGITLAT
                     GVATWIFAPIKFQADMGVLLSFMFLWNMLGAMILLPALAYFLLPPRLFKQQQ"
     gene            1870..2625
                     /locus_tag="VEQ16_05390"
     CDS             1870..2625
                     /locus_tag="VEQ16_05390"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63298.1"
                     /translation="MAQQRRTALVTGGGAGMGAATSQRLARDGMAVGVLDINGTNATS
                     VAASITAAGGAALALQADISDRAQVQDVVTRLREKFGPVTVLVNNAAVEDFCAFEKIS
                     DQAWDRQLGINLKGPYIVTQTVLPDMLAAGWGRIVNISSFGAQIGAPNMVAYTASKGG
                     IIALTRSLAIELGPKGITVNTVAPGFIDTPMARRAIDSDLFPVPFEQIVATYPIPRLG
                     KAEDVAAACAFFVSEEAGYITAQLLGVNGGAAM"
     gene            complement(2635..>3175)
                     /locus_tag="VEQ16_05395"
     CDS             complement(2635..>3175)
                     /locus_tag="VEQ16_05395"
                     /inference="COORDINATES: protein motif:HMM:NF037009.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYP63299.1"
                     /translation="RETLLRAASRLFRLKGYDGTGLNEILQASGLPKGSLYHHFPGGK
                     RELAEAATRTGGEAVARLVERVFSEAEDFTSGAVKVCETLADVIAHQDTVLACPVASI
                     LQAGAHEPHLRAAGQEVLASWNACLVGHLRRLGEPAPEMAAEMLIMQMEGAWMLSLAE
                     QDGAPFLRLAQWLERQKAA"
BASE COUNT          553 a         1044 c          926 g          652 t
ORIGIN      
        1 tgatttccgc tcgagcatga ttaccgtgcc gctgctggag aagaataatt tgaccggtaa
       61 gccgatcgat tacggcgccc tggcgcggca tctgaacgag atccgcgcca aatatgacca
      121 gcagggcgtg accgtgcgca tcaccggctt cgccatggtg gttggcgaca tgatcaatgg
      181 catcgacaag gtgctgacgt ttttcgccgt ctcgcttgtc atcgcggcct ctttcctgtt
      241 ctggtataca cgctgcgtgc gcagcacctt gctggtggtg ttcgcctcgc tcacggcggt
      301 gacgtggcag atgggcctgc tgacggtgct gggcttcgac ctcaccccct attcggtact
      361 cgtgcccttc ctcgtctttg ccatcggcat gagtcatggc gcgcagaaga tgaacggcgt
      421 gatgcaggat atcggccgcg gcacacaccc gctcatcgcc gcccgctata cgttcaggcg
      481 gcttttcctg gccggtttcg ccgcgctgat gtgcgacatg accagtttcg ccgtgttaat
      541 gactatccgc atcgtcgcca tccagcaact cgccctcatc gcctgcatcg gcgtcggcgt
      601 gctggtcatc acgaatctga tgatgctgcc gacgatgctg agttttaccg gcgtcagccg
      661 cacagcagct ttgcgctcgc taaaaagcac gccggcaccg ggcatgccgc ggccgcgcca
      721 tcctgtgtgg gatttcctgg accgtttcac cacacgcaat tacgccatcg gcgccattgc
      781 ctgtatggtt atcatcggcg tggtgggctg gtatgtcggg cgcggcgtgc agatcggcga
      841 tctgcagcct ggcgcgccgg agttgcgcca agcctcccaa tataaccggg acaatgcctt
      901 catcgtgagc aatttcacgg ccggcagcga cacttacatt gtgttcacgg acactccgcc
      961 ttatcattgt gtcgattacg acatgctggc gacgatggac cgcctgcaat ggcagctcga
     1021 ccagctgccc atcgtcgaat cctcaagctc cgcggcgagc ttttccgaca atatgttcat
     1081 gatgcagaac gagggcgcgc caaaatggta tggggtggag ccgaccgatg gtgttctcgg
     1141 ctccttcgcc aggaatatgc ccgacggatt ggtgaatttc gcctgcactt ttgcgcccat
     1201 ctatatctcg ctcacggatc accgtgcgaa gacgcttgag accatcacta atcttgtcga
     1261 gaatttcatc accaatcccg ccaaccacgg gccttatttc aagatgtctc tcgccggcgg
     1321 caatgccggt atcgaggccg cgaccaacat cgtcatccag caggccaacc gtaatatgct
     1381 gctgctggtc tatgcggtgg tcatcatctt ctgtctcatc accttccgct cctggcgcgc
     1441 cgtcatctgc gccgtggtgc cgctcaccat cacttccatt ctcgcccagg cgttgatggt
     1501 gtggctgcat atcggcgtga aggtcgccac tctgccggtg acggcgctgg gcgtgggcat
     1561 cggcgtggat tacgcgctgt atgtgctcag catcatgctg aaaaatcttc gccagggcgc
     1621 gtcactttcg gaagcctacc acgccaccct gctcttcacc ggccgcgttg tcatcctcac
     1681 cggcatcact ttggccacgg gcgtcgccac ctggattttc gcgcccatta aattccaggc
     1741 cgatatgggc gtattgctct ccttcatgtt cctctggaac atgctaggcg ccatgatcct
     1801 gttgcccgct ctggcctatt tcctgttgcc gccgcgtttg ttcaaacaac aacaataagg
     1861 aagcacatca tggcgcagca acgcaggacg gccctggtca cgggcggcgg cgctggcatg
     1921 ggtgctgcga ccagccagag gctggcgcgc gacggcatgg cggtgggtgt tctcgacatc
     1981 aacggcacga atgccacgtc cgtggcggcg tctatcaccg ctgccggcgg cgcggcgctg
     2041 gcgttgcagg cggatatttc agaccgtgcg caggtgcagg atgttgtcac acgcctgcgc
     2101 gaaaaattcg gaccggtgac cgtgctcgtc aacaacgccg ccgtcgagga tttctgcgcc
     2161 ttcgagaaaa tcagtgacca agcctgggac cggcagctcg gcatcaatct gaaaggcccc
     2221 tatatcgtca cccagaccgt gctgccagac atgctcgccg ccggctgggg acgcatcgtc
     2281 aacatctcct ccttcggcgc gcaaatcggc gcgcccaaca tggtggccta tacggcaagc
     2341 aagggtggga tcatcgcgct cacacgctcg ctcgccatcg agctcgggcc gaagggtatc
     2401 acggtgaaca cggtggcccc tggcttcatc gacacgccca tggcccgccg cgccatcgat
     2461 agcgatctgt ttcccgtgcc gttcgagcag atcgtggcga cctacccgat cccgcgcctc
     2521 ggcaaggccg aggacgtggc ggcggcctgc gctttcttcg tgtctgagga ggcaggctac
     2581 atcaccgcgc agctgctcgg ggtgaatggc ggcgccgcca tgtgagccgc gccgtcacgc
     2641 cgctttttgc cgttccagcc attgcgccag gcgcaggaaa ggggcgccgt cctgctcagc
     2701 cagggacagc atccaggcgc cctccatctg catgatcaac atttccgccg ccatctcggg
     2761 tgcgggctca cccaggcggc gcagatggcc gacaaggcag gcattccaac tcgccagcac
     2821 ctcttgcccg gcggcgcgca gatgtggctc atgcgccccg gcctgcagga tgctggcgac
     2881 aggacaggcc agtaccgtat cctgatgcgc gatcacatcc gccaaggtct cgcacacctt
     2941 caccgcgccg ctggtgaaat cctccgcctc ggaaaacacc cgctccacca gccgcgccac
     3001 ggcctcgccg ccggtgcgcg tcgccgcttc cgccaattcg cgcttgccgc cggggaaatg
     3061 atgatagagc gatcctttcg gcagccccga agcctgcagg atctcattca acccggtgcc
     3121 gtcatagcct ttcagccgga acaggcgcga ggcggcgcgc agcagcgtct cgcgg
//
LOCUS       DASQCV010000358         3684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2730835, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000358 DASQCV010000000
VERSION     DASQCV010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3684
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2730835"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1200)
                     /locus_tag="VEQ16_05400"
     CDS             complement(<1..1200)
                     /locus_tag="VEQ16_05400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP63300.1"
                     /translation="MIDVVIVGGGAGIGAARLLASRGVEALLIEAAPRLGGRAHSHHA
                     DGMALDLGCGWLHSADRNPWVTIAAERGIAIDRRPSAWGTQYRGLGFPPEAQAQARQA
                     LSNWFTRLEESPPASDCAADALPEDATWHPYIRAIAGFISGADPANISAIDFSIYDQA
                     STDCNWRLPAGYGALITSSLPPGITHRCNTVLESVALDSNGVRLETNAGQLRARAVIL
                     TVSTTVLASDMIRLPSGLDPWREAARQLPLGRNEKLFLALSPEAGLEEETLLMGDPHD
                     VETGTYYIRPFGWPVIECFLGSFGAERYAREGVEAGFVHAIGQLAALLGAAIRPHLRP
                     LIASNWTATPWIGGGYSCALPGAAAQRQILARPFENRLFFAGEATHATDFSTAHGALA
                     SGIRAAGE"
     gene            complement(1282..2982)
                     /locus_tag="VEQ16_05405"
     CDS             complement(1282..2982)
                     /locus_tag="VEQ16_05405"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYP63301.1"
                     /translation="MIIQNLPGKWDLEADVVSVGSGAGGLAAAITAEDHGASAMILER
                     TGQIGGVTAYSLGEVWIPGNHLAAAMGIEDTPQSGFRYVKSLGMGYANDIAILNQAIH
                     APVMLKFFEDAIGLRMMVIRNCPDYYFGYSNDGIAEGRLLEVEPFAAKSLGAWQERTR
                     TSPHVLPGLTHEDIFRNGGTANIVKWDFSVMAGRVEKDERCLGAGLVCYFVKGAIDRN
                     IPMHTGVNVKELIGDGERVIGVRAERDGAELFIKANRGVVIAVSSYERSPAFTKTLGQ
                     QLDVQSVIMPEIDGAHLRLAGKFGAKIARVPDVTMLGFRVPGEELQDGVPLWRNIMAF
                     AGLPHSIVVNRGGKRFADEGFYRSLYFAVDQIDGATQLHPNFPCWLVLDAQAREKYPL
                     ASIMPGQPLPEEVGVAADTIEDLAAKTGIATEGLAATIAAFNSYCDRNHDPEFGRGNS
                     QWGAYMSGDRFHKPSPTLGPLLKPPFYAVKLSRLASSGIAAAGVVVDEHCRALDWDGE
                     PIPGLYLAGNSVARLDNGAVMQSGMSNARGMTHGYLAGRHAAGQPSDLLQAALAGWEA
                     "
     gene            3200..>3684
                     /locus_tag="VEQ16_05410"
     CDS             3200..>3684
                     /locus_tag="VEQ16_05410"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP63302.1"
                     /translation="MEVRTEDRTRRSRGRPRSDKAELIESELLEGALQEFLRHGYGST
                     SMSQIVKSLGISKTTLYSRYGSKAELFEAIISQQIKGLSVETVLHTGGAPLTLEEGLR
                     AYAVRTLEVSFKGDLLQVNRLIYSESHRFPELGIAAAERTELGIRQIAEFIAECDVRD
                     G"
BASE COUNT          691 a         1105 c         1194 g          694 t
ORIGIN      
        1 ctcgccggcg gcgcgtatgc cgctggcgag ggcaccgtgc gcggtggaaa aatccgtggc
       61 gtgcgtggct tcaccggcga agaagagccg gttctcgaag gggcgcgcca ggatttggcg
      121 ttgtgccgcg gcgcctggca gagcgcagct atagccgccg ccgatccagg gcgttgctgt
      181 ccagttggag gcgatgagcg ggcgcagatg cgggcggatg gcggcgccca gcaaggcggc
      241 gagctggccg atggcgtgga cgaaaccggc ttcgacaccc tcacgcgcgt atcgctcagc
      301 gccaaagctg ccgaggaaac attcgatgac gggccagccg aaagggcgga tgtaataggt
      361 gccggtctcc acatcatgcg ggtcgcccat gagcagcgtc tcctcttcca gacccgcctc
      421 cggcgaaaga gcgaggaaga gtttttcgtt gcggcccagc ggtaattggc gtgccgcttc
      481 acgccaggga tcgaggccgg atggcaggcg gatcatgtca cttgccaaaa ccgttgtcga
      541 aacggtgagg atgacggcgc gcgcccgcag ctgtccggca ttcgtctcca gccggacgcc
      601 gttggaatcc agcgcaacgc tttccaggac ggtgttgcag cgatgcgtga tgccaggcgg
      661 gaggcttgag gttatgagcg cgccatagcc cgcaggcagg cgccagttgc agtccgtgga
      721 agcctgatca tagatggaaa aatcaatggc ggagatattt gcgggatcgg caccgctgat
      781 gaaaccggcg atggcgcgga tatagggatg ccaggtggca tcttccggca gcgcatcggc
      841 ggcgcaatcg ctggcgggcg gggattcctc caggcgcgtg aaccagttgc tcagcgcctg
      901 ccgcgcctgt gcttgcgctt cgggcgggaa tcccaggccg cgatattgcg tgccccaggc
      961 cgatggcctc cggtcgatgg cgatgccacg ctcggcggcg atggtgaccc aggggttgcg
     1021 gtcggcggaa tgcagccagc cgcagccgag atcgagcgcc atgccatcgg cgtgatggct
     1081 gtgcgcccgg ccgccgagcc ggggcgcagc ttctatgagg agcgcttcga cgccgcggga
     1141 agcaagaagc cgcgccgcgc ctataccggc gccgccgcct acgatcacca catcaatcat
     1201 ggccaaccat tttcgctccg cactttgtcc tgcctgctgc aagccatatg gtcaacaaag
     1261 cgcgggattt tcaaacagtc tctatgcctc ccaaccggca agcgcggcct gcaggaggtc
     1321 gctcggctgc ccggcggcat gccgtcccgc gagatagccg tgtgtcatgc cgcgcgcgtt
     1381 ggacatgccg ctttgcatca cggccccatt atccagccgt gcgaccgaat ttccggcaag
     1441 gtagaggcca gggatcggct ctccgtccca gtccagcgcc cggcaatgct cgtcgaccac
     1501 cacacccgcc gcggcaatgc ccgagctggc gaggcggctc agcttcacgg cgtagaaggg
     1561 aggcttcagc agcgggccca gcgtcgggct gggtttatgg aatctgtcgc cgctcatata
     1621 ggcgccccat tgcgaattgc cgcggccaaa ctcgggatca tgattgcggt cgcaatagga
     1681 attaaaggcg gcgatggtgg cggcgagacc ttctgtggca atgccggtct tcgctgccaa
     1741 gtcctcgatt gtatccgctg caaccccgac ctcctcgggc aaaggctggc ccggcatgat
     1801 tgaggcgaga ggatatttct cccgcgcttg ggcgtcgagc acgagccagc aagggaaatt
     1861 gggatgaagc tgggtcgccc cgtcgatctg gtcgaccgcg aaatagaggg agcggtagaa
     1921 tccttcgtca gcgaagcgtt tgccgccgcg atttaccacg atggaatggg gcagaccggc
     1981 aaatgccatg atgttgcgcc agagcggcac gccatcctgc aattcctcgc ccggcacgcg
     2041 gaagccaagc atggtgacat cgggcacgcg cgcgattttg gcgccgaact tgccggccag
     2101 ccgcagatgc gcgccgtcga tttcgggcat gatgaccgat tgcacgtcga gttgctggcc
     2161 gagcgttttg gtgaatgccg gtgaccgctc atagctgctg accgcgatga cgacgccgcg
     2221 attggccttg ataaagagct ctgcgccatc gcgctccgcg cgcacgccaa tcacgcgctc
     2281 gccatcgcca atcagctctt tcacgttgac gccggtgtgc attggaatat tacggtcgat
     2341 cgcgcctttg acgaaatagc agacgaggcc agcacccagg cagcgctcgt ccttctcgac
     2401 ccgtccggcc atcaccgaga aatcccattt cacgatattc gctgtgccgc cattgcggaa
     2461 aatatcctcg tgcgtgagac cgggtagcac atgcggcgat gtgcgcgtgc gctcctgcca
     2521 tgcgccgagc gatttcgcgg cgaagggttc cacttcgagc agcctgccct cggcgatgcc
     2581 atcgttcgaa tatccgaaat aataatccgg gcaattgcgg atcaccatca tgcgcaggcc
     2641 gatcgcgtct tcgaagaatt tgagcatgac cggcgcgtgg atggcctggt tgaggatcgc
     2701 gatatcgttc gcatagccca tgccgaggct cttcacgtaa cggaagccgc tttgcggggt
     2761 gtcctcgatt cccatggcgg cggcgagatg gtttccgggg atccagacct cgccaagaga
     2821 ataggccgtc acgccgccga tctggccggt gcgttcgaga atcatggcgc tcgcgccatg
     2881 gtcctcggcg gtgatcgcgg cggcgagccc gcccgcgccg gagccgacgg acacgacatc
     2941 cgcctcgaga tcccatttgc cgggcaggtt ttggatgatc atgacgatgt cctcgcacct
     3001 cttttttcag acgggaatta gtccggaacc tgtgccggct tgtatgctgc gccttaaaat
     3061 tatagtacag atatgtttat tttttgctgt catgcggcag tgtttgtgtc aagtaagcca
     3121 atgtgagaga agcgcgtcgt tgattatttt gacggaaggc gtgcctcccg ttttcgtggg
     3181 acgagaggca gcggcggata tggaggttcg gacggaagac cggacacggc gctcacgagg
     3241 gcgcccgcgc agcgacaagg ctgaactgat cgagagcgaa ctgcttgaag gcgcattgca
     3301 ggaatttctg cggcacggct atggcagcac gtccatgtcc cagatcgtca agtcgctcgg
     3361 catctccaag accacgctct attcccgcta tggttcgaag gccgaacttt ttgaggcgat
     3421 tatttcccag cagatcaaag gcttgtcggt agagacggtg ctgcacaccg gcggcgcgcc
     3481 tttgacgctg gaagaagggc tgcgggccta tgcggtccgc acgcttgagg tcagcttcaa
     3541 gggcgatctt cttcaggtca accgcttgat atacagtgaa tcccaccgct ttccggaact
     3601 cggcatcgcc gccgccgaac gcacggaact tggcataagg cagattgccg aattcatcgc
     3661 cgaatgcgac gtccgggacg gtat
//
LOCUS       DASQCV010000359         4534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1074067, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000359 DASQCV010000000
VERSION     DASQCV010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4534
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1074067"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..1080
                     /locus_tag="VEQ16_05415"
     CDS             76..1080
                     /locus_tag="VEQ16_05415"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HYP63303.1"
                     /translation="MKLSVLDQSPIKSGISPSQSIRDSLVLARECERFGYYRYWLSEH
                     HNTDSVAGSAPEVLAAAIAATTSKIRVGSAGVMLPHYSALKVAEQFRVLEAIAPGRID
                     LGLGRAPGSDGRTAFALNPNAARAADMFPTQVRDVMAWSSGSPLPEQHPFREIICQPQ
                     GPTSPEIWILGSSNYGAQLAGYFGLPYCYAHFFSDGEGTEEALYVYRQSFKPSAILEQ
                     PHCSIVVAALAAETLEEAEYWYRSRAVLWAVRGRGKFIALPTPEEAERFELTDTERAR
                     MAAARERAYIGAGRDVADRLKQLAARLQLDELVITTGATSEAARIKSYELFAREFGGH
                     "
     gene            1444..1680
                     /locus_tag="VEQ16_05420"
     CDS             1444..1680
                     /locus_tag="VEQ16_05420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63304.1"
                     /translation="MKQTFRLALLLTPLLFLTACNPQAHAANQDFNAAGTSLGQGHIG
                     SGAKDIGQGFSNGANATGQAITDTAHKIGQAFSE"
     gene            complement(1670..2128)
                     /gene="ruvX"
                     /locus_tag="VEQ16_05425"
     CDS             complement(1670..2128)
                     /gene="ruvX"
                     /locus_tag="VEQ16_05425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HYP63305.1"
                     /translation="MALYNLAQLAPLLAPGARLIGLDPGAKRIGVALSDVGLQVASPY
                     ATLARTKLKQNAAEIAAIAAREGAGGLIIGLPLDGEQKLGPRAQAARDWAHGLSAATG
                     LPVAMVDESFTTAETHEHLIAAGVSRARRDEIIDKMAAAAILQRALDLIR"
     gene            2180..2467
                     /gene="gatC"
                     /locus_tag="VEQ16_05430"
     CDS             2180..2467
                     /gene="gatC"
                     /locus_tag="VEQ16_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HYP63306.1"
                     /translation="MSLDAATVRRIARLARIRVGDEEVATLQGELNAILGYVEQLAEV
                     DVEGVEPLSGGAQMALRQREDVVTDGEIAEKILANAPDRELNFFSVPKVVE"
     gene            2464..3939
                     /gene="gatA"
                     /locus_tag="VEQ16_05435"
     CDS             2464..3939
                     /gene="gatA"
                     /locus_tag="VEQ16_05435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HYP63307.1"
                     /translation="MSIFDLTIAGAAKELAARKISAVELVTAYNDAVAELNPRLNAYI
                     TTTPELALAQAEDADARIAAGNATPLTGIPLAMKDLFCTEGVRTTAASKILEPFVPPY
                     ESTVSARLKAAGAVMLGKANLDEFAMGSSNITSGYGPVENPWKRNGSDAKLVPGGSSG
                     GSASAVAARIALAATGTDTGGSIRQPAAFTGLAGIKPTYGRCSRFGIIAFASSLDQAG
                     PMARNVEDCALLLNAMAGFDAKDSTSAERSVPDFTAALNRGVKGLRIGIPAEYRMEGT
                     NSEILALWEKGISWLREQGAEIVEISLPHTKYGLAVYYIVAPAEASSNLARYDGVRFG
                     ARVDGVDLIDMYERTRAAGFGAEVKRRIMIGTYVLSHGYYDAYYLKAQKVRNLILRDF
                     TEAFAKVDAILTPTAPSAAFGLGEKMDDPVTMYLNDVFTVPASLAGVPAMSVPAGLSA
                     EGLPLGLQIIGRHFDEETVFAVSAAIEKAAGFSALPEVRAK"
     gene            3939..>4534
                     /gene="gatB"
                     /locus_tag="VEQ16_05440"
     CDS             3939..>4534
                     /gene="gatB"
                     /locus_tag="VEQ16_05440"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006115435.1"
                     /note="allows the formation of correctly charged
                     Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
                     of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
                     which lack either or both of asparaginyl-tRNA or
                     glutaminyl-tRNA synthetases; reaction takes place in the
                     presence of glutamine and ATP through an activated
                     phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     GatCAB subunit B"
                     /protein_id="HYP63308.1"
                     /translation="MAYTLEGRTGAWEVVCGLEIHAQVISESKLFSGASATYGGAPNA
                     HVSFVDAGFPGMLPVINRECVAQAVRTGLGLKAQINLFSRFDRKNYFYADLPNGYQIS
                     QFAHPVVGTGTVEIELQDGTIKHIGITRLHLEQDAGKSMHDQHVSKSVIDLNRAGVAL
                     MEIVSEPDIRSPEEAGAYLRKIRQIVRYLGTCDGNMEEG"
BASE COUNT          824 a         1341 c         1505 g          864 t
ORIGIN      
        1 acgaaacggg catgactgcc ggatgaaaaa atcatgaccc tgcgttcaag gacattttga
       61 tcccatatag gcggcatgaa actctccgtc ctcgaccaat cccccattaa atcaggcatt
      121 tccccgtcgc agagcatccg cgattcgctg gtgctggcac gggaatgcga gcgcttcggc
      181 tattaccgct attggctctc cgagcatcac aatacggatt ctgtggctgg ttccgcgccg
      241 gaggtgctgg ctgcggccat tgccgccacc acgagcaaga tccgtgtcgg ctcggcggga
      301 gtgatgttgc cgcattattc ggcgctgaaa gtggccgagc aattccgcgt gctggaggcc
      361 atagcaccgg ggcggatcga tctggggctc ggccgcgcgc cgggctcgga cggtcgcacg
      421 gctttcgcgc tcaaccccaa tgcagcacgg gcggcggata tgtttccgac ccaggtacga
      481 gatgtgatgg cctggagttc cggttcgccg ttaccggagc agcacccgtt ccgtgagatc
      541 atctgccagc cgcaaggccc gaccagcccg gaaatctgga tcctcggcag ctccaattac
      601 ggcgcccagc tcgccggcta tttcgggttg ccttattgct acgcgcattt tttctccgat
      661 ggcgagggca cggaggaggc gctgtatgtc tatcgccaga gcttcaaacc ctccgccatc
      721 ctggagcagc cgcattgcag catcgtcgtg gcggcgctgg cggcggagac gctggaggag
      781 gcggaatatt ggtaccgctc tcgcgccgtg ctgtgggcgg tgcgcggacg gggtaaattc
      841 atcgctttac cgacgccgga ggaagcggaa agattcgaac tgaccgacac tgaacgggca
      901 cgcatggcag ctgcgcgcga gcgcgcctat atcggcgccg gacgggacgt tgcggacagg
      961 ctgaagcagc ttgcggcgcg tttgcaactg gatgagctgg tgatcaccac aggcgcaacc
     1021 agcgaggcgg cgcggatcaa atcctatgag ttgttcgcgc gcgaattcgg ggggcattaa
     1081 cgccaatctt gtcctcacgg ccatgaggcc gatctttaaa actcgaaaga tatatgcatt
     1141 ttccttgaaa atattgaacg ctattgcggc atcgagggca ttacgctgcc attgcgccgc
     1201 cgccctggcg ctggccgcct gcgatgtctc gggcagcgcg gcgagccaga gtttttttaa
     1261 atgccggcga gagtctcggc cagggccgtg ttgtcagcgg cgccaaggat atcggggcgg
     1321 gcttcagcaa cgggggcaat gcgatgggcc agatcatcac cgccaggcac ataacacggg
     1381 caatagcgtc agcctgtaag gggttccggt tgaaatttac tggcgcggcg gcatgatagc
     1441 ggcatgaaac agacattccg ccttgccttg ctgctcacgc ccctgctctt ccttaccgcc
     1501 tgcaaccccc aggcccacgc cgcgaaccag gatttcaacg ccgccggcac gagtctcggc
     1561 cagggccata taggcagcgg tgccaaggac atagggcaag ggttcagcaa cggagccaat
     1621 gccaccggcc aggccattac cgatactgcg cataagatag gccaggcttt cagcgaataa
     1681 ggtcaagcgc ccgctgcaga atggcggcgg cggccatctt gtcgatgatt tcgtcgcgcc
     1741 tggcgcggct gaccccggcg gcgatgagat gctcatgtgt ctcggctgtg gtgaaacttt
     1801 catccaccat ggccacgggc aggcctgtgg cggcgctcag gccgtgggcc cagtcgcgcg
     1861 cggcctgggc gcgggggccg agtttttgct ctccgtccag cggcagaccg atgatcagcc
     1921 cccctgcccc ttcgcgcgcg gcgatggcgg cgatttcggc ggcattctgc ttcagcttgg
     1981 tccgggccag ggtcgcatag gggctggcca cctgcagccc gacatccgac aaggccacgc
     2041 cgatgcgctt cgcccccggg tccagcccga tgagccgcgc gccgggggca agcagggggg
     2101 caagctgggc gaggttgtag agggccatgc ccgcctgtat ggtccggccg gatttgtaag
     2161 ccaagtatag gacgtaaaaa tgtcgctgga tgccgctacg gtacgccgta tcgcgagact
     2221 ggcccggatt cgggtcggag atgaagaagt cgccacgctg cagggcgagt tgaacgccat
     2281 tctgggttat gtcgagcagc ttgcggaagt ggatgtggag ggggtcgagc cgctctccgg
     2341 cggggcgcag atggcgctgc ggcaacgcga ggatgtggtg accgacggcg agatcgcgga
     2401 gaaaatcctg gccaatgcgc cggaccgcga gctgaatttc ttctccgtgc cgaaagtggt
     2461 ggaatgagca tttttgacct gacgattgcc ggcgcggcga aagagctcgc ggcccgcaag
     2521 atttcggccg tggaactggt gacggcctat aatgacgccg tagcggagtt gaacccgcgg
     2581 ctgaacgcct atattaccac gacgcccgag ctggccctgg cgcaggcgga ggacgccgat
     2641 gcgcgcattg ccgccggcaa tgccacgccc ctcaccggca ttccgctggc gatgaaggat
     2701 ctgttctgca ccgagggcgt gcgcacgacc gcggcaagca agatccttga gccgttcgtg
     2761 ccgccttatg aaagcaccgt gtccgcgcgg ctgaaggcgg cgggcgcggt gatgctgggc
     2821 aaggcgaatc tcgatgaatt cgccatgggc tcctccaaca tcacctccgg ttacgggccg
     2881 gtggagaatc cgtggaagcg taacggttcg gatgcgaagc tggtgccggg cggctcgtcc
     2941 ggcggctcgg cttcggctgt cgcggcgcgc atcgcgctgg cggccacggg cacggatacg
     3001 ggcggctcca tccgccagcc ggccgccttc acgggcctgg ccggcatcaa gccgacttac
     3061 gggcgctgtt cgcgcttcgg catcatcgcc ttcgcctcat cgctggatca ggccgggccg
     3121 atggcgcgca atgtggaaga ttgcgcgctg ctgctgaatg cgatggcagg cttcgatgcg
     3181 aaggattcca cgtccgccga acgttcggtg ccggatttca cggcggcgct gaaccgtggc
     3241 gtgaaggggc tgcgcatcgg tattccggcg gaatatcgca tggaaggcac caattcagag
     3301 atcctcgcgc tgtgggagaa aggcatctcc tggctgcgcg agcagggcgc ggagattgtc
     3361 gagatttcgc tgccgcacac gaaatatggc ctggctgtct attatatcgt ggcgccggcc
     3421 gaggcttcgt cgaatctcgc ccgttacgat ggcgtgcgct tcggcgcgcg tgtcgatggc
     3481 gtggatttga tcgacatgta tgagcgcacc cgcgccgccg ggttcggcgc ggaggtgaag
     3541 cggcgcatca tgatcggcac ctatgtgctg agccatggct attatgacgc ctattacctc
     3601 aaggcgcaga aggtgcggaa tcttattctc cgcgatttca ccgaggcttt tgccaaggtc
     3661 gatgccatcc tcacccccac cgcgccgtcg gccgcgttcg ggctgggcga gaagatggat
     3721 gacccggtga cgatgtatct gaacgacgtg ttcaccgtcc ccgcctcgct tgcgggcgtg
     3781 ccggccatga gcgtgccggc ggggctgtcc gccgaggggc tgccgctcgg gctgcaaatc
     3841 atcggacggc attttgacga ggaaaccgtg tttgccgtgt ccgcggcgat cgagaaagca
     3901 gcaggttttt cggccctgcc tgaagtgcga gctaaataat ggcatataca ttggaaggcc
     3961 gtaccggcgc ctgggaagtg gtttgcgggc ttgaaatcca cgcccaggtc atttctgaat
     4021 cgaagctttt ctccggcgct tccgccactt atggcggcgc gcctaacgca catgtctcct
     4081 tcgtggatgc gggttttcct ggcatgctgc ctgtcatcaa ccgcgaatgt gtggcccagg
     4141 ccgtgcgtac cgggctgggg ctgaaggcgc agatcaatct gttctcgcgc ttcgaccgga
     4201 agaattattt ctatgccgac ctgccgaatg gctatcagat cagccagttc gcgcatccgg
     4261 tggtcggcac cggcacggtc gagatcgagc tgcaggacgg cacgatcaag catatcggca
     4321 tcacgcggct gcatctggag caggatgcgg gcaagtcgat gcatgaccag catgtgagca
     4381 aatcggttat cgacctcaac cgcgccggtg tggcgttgat ggagattgtc tcggagccgg
     4441 atatacgctc gccggaggaa gccggggcgt atttacggaa aatccgtcag atcgtgcgct
     4501 atctcggcac ctgcgatggc aacatggagg aagg
//
LOCUS       DASQCV010000360         1997 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_908421, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000360 DASQCV010000000
VERSION     DASQCV010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_908421"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..543
                     /gene="ruvA"
                     /locus_tag="VEQ16_05445"
     CDS             <1..543
                     /gene="ruvA"
                     /locus_tag="VEQ16_05445"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003623341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HYP63309.1"
                     /translation="IDVNGVGYLLFCSSRTLGTLTEGTAASMLTEMQMREDAVSLYGF
                     AAAAEREWFRLLTTVQGVGAKVALGILSALSPDQLIAAISSQDKAALTRAPGVGPKLA
                     ARLVTELREKAGVMPGGGAAPLPAAHVRGHVADALSALLNLGYRRAEAEAALNHAVSH
                     HGEEASLDDLIRTSLRALSK"
     gene            540..1568
                     /gene="ruvB"
                     /locus_tag="VEQ16_05450"
     CDS             540..1568
                     /gene="ruvB"
                     /locus_tag="VEQ16_05450"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002725987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HYP63310.1"
                     /translation="MSDDRITSGEKLPDDVGDAALRPQSLDDFTGQQASRENLKIFIQ
                     AAKSRGEALDHVLLHGPPGLGKTTLAQIVAREMGVGFRATSGPVIQKSGDLAAILTNL
                     QPCDVLFIDEIHRLQPAIEEILYPAMEDFQLDLIIGEGPGARTVRIDLPPFTLVGATT
                     RAGLLATPLRDRFGIPLRLVFYTPDELTGIVIRLAERLGMNLSYEGAQEIAKRSRGTP
                     RVAGRLTRRVRDFATGSSGPITRAQADAALTRLDVDHKGLDAMDIRYLRRLAEHHGGG
                     PVGVETLAAALAEARDTLEDVVEPFLIQEGLLLRTSRGRMLGEPGWRHLGLEPPRNRP
                     EQLDFLGE"
     gene            1642..>1997
                     /locus_tag="VEQ16_05455"
     CDS             1642..>1997
                     /locus_tag="VEQ16_05455"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbgC/FadM family acyl-CoA thioesterase"
                     /protein_id="HYP63311.1"
                     /translation="MIYTYTTRIYYQDTDAGGIVYHANYLAIAERARTEALREMGAPH
                     SELISEFGVMFVVHRVNLHYQRPARIDELIRVETEFTEVNGASVTLRQNFIRDTDSLA
                     VLVLGLGCARVSDGRAA"
BASE COUNT          346 a          631 c          675 g          345 t
ORIGIN      
        1 atcgatgtga acggggtggg ctatctgctg ttctgctcca gccgcacctt gggtacgctc
       61 accgagggta cggcggcctc gatgctcaca gagatgcaga tgcgcgagga cgcggtgagc
      121 ctgtacggct ttgccgctgc cgccgagcgc gaatggttcc ggctgctcac caccgtgcag
      181 ggggtcgggg cgaaagtggc gctggggatt ttgtccgcct tgtcgccgga ccagctgatt
      241 gccgccatct cgtcccagga caaggcggcg ctgacccgcg cgccgggggt ggggccgaag
      301 ctggcggcgc ggctggtgac agagttacgt gaaaaagccg gggtaatgcc gggcggcggg
      361 gcggcacctc tgccggcggc gcatgtgcgc ggccatgtgg cggatgcgct ctcggcactg
      421 ctgaatctgg gctaccgccg cgccgaggcc gaggcggctt tgaaccatgc ggtgagccat
      481 catggcgagg aagcgagcct tgatgatctc atccgcacca gcctgcgggc cttaagcaaa
      541 tgagcgacga ccgcatcacc tccggcgaaa aactccccga tgatgtgggc gatgccgcgc
      601 tgcggccgca gagcctggat gatttcaccg gccagcaggc cagccgggaa aacctcaaaa
      661 tcttcatcca ggctgcgaag agccgtgggg aagcccttga tcatgtgctt cttcacggcc
      721 cgccgggcct tggcaagacc accctggcgc agatcgtggc gcgggagatg ggggtcggct
      781 tccgcgccac ctccgggccg gtcattcaga aatcgggcga cctcgccgcc atcctcacca
      841 atctgcagcc gtgcgacgtg ctgttcatcg acgagatcca ccgcctgcag cctgccatcg
      901 aggaaatcct ctatccggcg atggaggatt tccagctcga cctcatcatc ggcgaggggc
      961 cgggggcgcg gacagtgcgc atcgacctgc cgccttttac cctggtgggg gccaccacgc
     1021 gggccgggct gctggcgacg ccgctgcgcg acaggttcgg gattccgctg cggttggtgt
     1081 tctatacccc ggatgaactg acgggcatcg tcatccggct ggcggaaagg ctgggaatga
     1141 acctctctta tgaaggcgcg caggagattg cgaaacgctc gcgcggcacg ccgcgtgtgg
     1201 cggggcggct gacgcggcgg gtacgggatt tcgccacggg ctcttccggg ccaataacgc
     1261 gggcacaggc cgatgcggcg ctgaccaggc tggatgtcga ccataagggc ctggacgcaa
     1321 tggatatccg ctatctgcgc cgcctagcgg agcatcatgg cggcggcccg gtgggcgtgg
     1381 aaacactggc ggcggccctg gccgaggcgc gggatacgct ggaagacgtg gttgagccgt
     1441 tcctcatcca ggaagggctg ttgctccgca cctcgcgcgg cagaatgctg ggcgagccgg
     1501 gctggcggca tctcgggctt gaaccgccgc gtaaccggcc ggaacagctg gattttctgg
     1561 gggaatgacg ggctgaacgc ccagcctcag ccccatccgc gccacagaat tgccccactc
     1621 ccaaaccaga ttttcgcagg catgatctac acctacacca cccgcatcta ctaccaggac
     1681 acggacgcag gcggcatcgt ctaccatgcc aactacctcg ccattgccga gcgcgcccgc
     1741 actgaggccc tgcgtgagat gggggccccc cattcggaat taatttcaga atttggcgtc
     1801 atgttcgtgg tgcaccgcgt caatttgcac tatcagcgcc ccgcacgcat cgacgagctt
     1861 atccgggtcg agacggaatt taccgaagtg aacggcgcca gtgtcacgct tcgtcaaaat
     1921 ttcatcagag acaccgactc gctcgccgtg cttgtgctgg gcctcggttg cgcgcgggtc
     1981 tcggatggca gggcggc
//
LOCUS       DASQCV010000361         1536 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2068428, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000361 DASQCV010000000
VERSION     DASQCV010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2068428"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            306..719
                     /locus_tag="VEQ16_05460"
     CDS             306..719
                     /locus_tag="VEQ16_05460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012566141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0032981 - mitochondrial respiratory chain
                     complex I assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit NDUFA12
                     family protein"
                     /protein_id="HYP63312.1"
                     /translation="MSKSEAGAAPAQRKALGLRTLISNPGLYFLTLFKGKFVGADAMG
                     NQYFERPGKLRARRWVVYAGAPEASVIGPEWHAWLHHLTDAPLADTGAKPWWRPHQAN
                     LTGTPDSYRPAGHDYMGGNRARASADYEAWSPDQS"
     gene            719..1237
                     /gene="mlaD"
                     /locus_tag="VEQ16_05465"
     CDS             719..1237
                     /gene="mlaD"
                     /locus_tag="VEQ16_05465"
                     /inference="COORDINATES: protein motif:HMM:TIGR04430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HYP63313.1"
                     /translation="MPRRIPELFTGFAVIAASVWFLIFAMSGAGKVNTGGYPLQAQFS
                     SIGGLTVGADVKIGGVVIGHVADERLDPNTYAAIVRLAINDNIKVPDDSSASVTSDGL
                     LGNSYIAVAPGGSNTMLAPGQSFAVTQSAVNIQDLLGKFIFSMGNGNSGKTGQASTPA
                     GGTAPGNPAALK"
BASE COUNT          272 a          460 c          488 g          316 t
ORIGIN      
        1 gatgttcgat tgctgcggga agatcgccgc cagcgcgtca gctgcgtgct ggccccaggc
       61 cgcgggcaat ttcacggtga cgggcgcggt atcagggtcc atcgcggccg ttacagctat
      121 ttgctttatg ccatgccagg atttgtcggt tctgatctgt cccatggtgc cgacattatg
      181 ctgagccgcg actctataaa agtgcatatt gtggttaatt tggtgtcaca ccacaaaatc
      241 ctgtggatag ctttactggc gggacgagat ggaccaacgc ctcggcttct tttatatcag
      301 ggctcatgag caagagcgaa gctggcgccg cacccgcgca acgtaaggcc ctcggccttc
      361 ggacattgat aagcaacccg ggcctctatt tcctgacgtt gttcaagggc aagtttgtcg
      421 gtgcggatgc catgggcaac cagtattttg agcgccccgg caagttgagg gcgcggcgct
      481 gggtggtcta tgcgggggcg cccgaagcgt cggtcattgg cccggaatgg cacgcttggc
      541 tgcaccatct tactgatgcg cccttggccg atacgggggc taagccgtgg tggcgcccgc
      601 accaggccaa tctcaccggt acgccggaca gttaccggcc ggctgggcat gattatatgg
      661 gtggcaatcg cgccagggct tcggcggatt acgaagcctg gtcgccggac caatcctgat
      721 gccgcgccgc atacctgagc tgtttaccgg ctttgccgtg atcgcggctt ctgtctggtt
      781 tctgattttc gccatgtccg gcgccggcaa ggtcaatacc ggcggctatc cgttgcaggc
      841 gcagttttcg agcattggcg ggctcaccgt tggtgctgat gtgaagatcg gcggtgtcgt
      901 gatcggccat gtggctgacg agcggctcga cccgaacact tatgcggcga tcgtgcggct
      961 ggcgatcaat gacaatatca aggttccgga tgacagcagt gcctccgtca cgtcggacgg
     1021 gttgctgggg aattcttata ttgccgtcgc gcctggaggt tccaatacga tgctggcgcc
     1081 agggcagagc tttgccgtga cgcaatcggc ggtcaatatc caggatttgc tgggcaaatt
     1141 cattttctcg atgggcaatg gcaactcagg gaagacgggc caggcgtcca cacccgctgg
     1201 cgggacggcg cccggtaacc cggcggcatt gaagtgatgc gcaaggcgtt gctcatcggg
     1261 ctcgcggctc tgtcttttgg cacagctcgg gcacagaatg gcggcagcgt gatcgtgatc
     1321 ccacctgcgc cgccgctgac acccgaagcg ccgccgccag ccccggttca accgccgccg
     1381 caactgccgc cacctggctt ggtgcaatcg gtacctcttc ctgaggggaa cgataccaca
     1441 ccgccggcat cggcagtgcc tgcgcccgca acaacgcctg gcgagcaggc aaccacacca
     1501 gctgcgcccg cgacggcagc cacgacgcag ccgcct
//
LOCUS       DASQCV010000362         1914 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2731745, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000362 DASQCV010000000
VERSION     DASQCV010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1914
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2731745"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..412
                     /locus_tag="VEQ16_05470"
     CDS             <1..412
                     /locus_tag="VEQ16_05470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012224991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HYP63314.1"
                     /translation="LCDGCGRCCLHKLRDEATDELSFTNVACRLLNVETGQCTSYKNR
                     RAHVPDCVQLTPKRLRQIDWLPPTCAYRLLTEGKDLPAWHPLRTGRAESVIEAGVSVA
                     GRCLSEREAGPLEHHLVEWPGQTPQMPRRKRARK"
     gene            409..1116
                     /locus_tag="VEQ16_05475"
     CDS             409..1116
                     /locus_tag="VEQ16_05475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HYP63315.1"
                     /translation="MRLDAQTTEMLPVGGVLTAVAFRRSVRARKISLRIDPGFDGILI
                     TLPMRVSHRAGLALLRQHEEWAAEKLAALPHPVRIAAGARVPVDGVMHDIVPVPEGRG
                     GAWIGDGQIFVTGEPEFLARRVTDCLKRRARQHLTALAAEKAALAGAKIRAVRIKDTR
                     TRWGSCAPDGTLAFCWRLVCAPEFVQDYVVAHEVAHLRHMNHGRQFWTLTETLTLHRA
                     AAGDWLTRNGLELLRLG"
     gene            complement(1147..1758)
                     /locus_tag="VEQ16_05480"
     CDS             complement(1147..1758)
                     /locus_tag="VEQ16_05480"
                     /inference="COORDINATES: protein motif:HMM:NF024809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYP63316.1"
                     /translation="MITLYHAPQSRSSRIIWLLEEIGAPYDIHPVSIFRPLSGEGAPD
                     PANPHPDQRVPAIQHDGALIAESVAIVLYLTDAFPQAKLGPAVGDPRRGAYLTWLAWY
                     AAELEPCMLAAMGGELADAPMKQRRYDTMIRRLGTILVQQPYLMGEDFTGADLLVASA
                     IMFGRRVFPAGDPFDAHVSRCKSRPAAQRGIGLDAASGLQNAA"
BASE COUNT          331 a          577 c          693 g          313 t
ORIGIN      
        1 gctctgcgac ggctgcggcc gttgttgcct gcataaattg cgagacgagg caacggatga
       61 actaagcttc accaatgtcg cctgccggct gctgaatgtg gagacggggc aatgcacgag
      121 ctacaagaac cgccgtgccc atgtaccaga ttgcgtgcag ctcacaccaa agcgcctgcg
      181 ccagatcgac tggctgccgc ccacctgcgc ctacaggctg cttactgagg gcaaggatct
      241 gcccgcctgg cacccgctgc gcacgggccg ggcggaaagc gtgatcgagg ccggcgtgtc
      301 ggtggccggg cgctgcctga gcgaacgcga agccgggcct ctggagcatc atctggtcga
      361 atggccgggg cagacgcccc agatgcccag aagaaagcgg gcgcgaaaat gaggctggac
      421 gcgcagacca ccgagatgct gcctgtgggg ggcgtgctga cggcggtcgc gttccgccgc
      481 tcggtccggg cgcgcaaaat ctccttgcgg atcgatcccg gtttcgacgg gattctcatc
      541 accttgccga tgcgcgtctc gcatcgggcg gggctcgcct tgcttcgcca gcatgaggaa
      601 tgggcggcgg aaaaactggc cgccctgccc caccccgtgc gcatcgccgc cggcgcccgc
      661 gtgccggtgg atggggtgat gcatgacatc gtgccggtgc cggagggacg cggcggggcg
      721 tggattggcg atgggcagat tttcgtcacc ggcgagccgg aattcctggc aaggcgcgtg
      781 acggattgcc tgaaacggcg ggcacggcag cacctcaccg cgctagcggc ggaaaaggcc
      841 gcgttagcgg gggcaaaaat acgcgcggtg cggatcaagg atacgcgcac gcgctggggc
      901 tcctgcgcgc cggacggtac cctggccttt tgctggcgcc tggtctgcgc cccggaattt
      961 gtccaggatt acgtcgtggc gcacgaagtg gcgcatctgc ggcacatgaa tcatggccgc
     1021 caattctgga cgctgaccga gacgttgacg ctgcatcgcg ccgccgccgg cgactggctg
     1081 acacgcaacg ggctggaact gctgcggctg gggtgaaggg ccggtacgca ccggcccttt
     1141 ttcgtgtcag gctgcgttct gcaggccgct ggcggcgtcc agcccgatgc cgcgctgggc
     1201 ggcggggcgc gatttgcagc gggacacatg agcatcgaac ggatcgcccg cggggaagac
     1261 gcggcggccg aacatgatgg cgctggccac gagcagatcg gcaccggtga aatcctcgcc
     1321 catcaaataa ggctgctgta ccaggatggt ccccaggcgg cggatcatgg tgtcgtagcg
     1381 gcgctgtttc atcggcgcgt cggccagctc gccgcccatg gctgccagca tgcagggctc
     1441 cagctcggcg gcataccagg ccagccaggt gagataggca ccgcgccgcg ggtcgccaac
     1501 agccgggccg agcttggcct ggggaaaagc gtccgtgaga tagagcacga tggcgaccga
     1561 ttccgcgatg agcgcgccgt catgctggat ggcgggtacg cgctggtcgg gatgcggatt
     1621 ggcggggtcg ggcgcgcctt cgccgctgag ggggcggaag attgagacag ggtggatatc
     1681 gtagggagct ccgatctctt cgagcagcca gatgatgcgc gaggaacgtg attgcggggc
     1741 gtggtagagc gtgatcatgc gaacggcctc cttggcgtga gatgcgccgg cgattgccta
     1801 gcgtgaggcc cttgtaacca gaggctactg acagcatcct gtcagtagga gggacgcaaa
     1861 atgcgccggg ctgatagatt gttccagatc gtccagatat tgcgccgctc ttcc
//
LOCUS       DASQCV010000363         1661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3229339, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000363 DASQCV010000000
VERSION     DASQCV010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3229339"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..>1661
                     /locus_tag="VEQ16_05485"
     CDS             22..>1661
                     /locus_tag="VEQ16_05485"
                     /inference="COORDINATES: protein motif:HMM:NF024872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYP63317.1"
                     /translation="MTADDPFAAIDLDHCRDVNTNSIDVWAQNFLDCGRHTYSEVTPS
                     GAGCRIWGLASGDSLHKKFTLEIDGKSIAAELFRRTNKALTITGYKLDIIQELANIDR
                     VLDWAVIWGERRKAAAAEAAAPATCNDFNGNGSGYSVEQIEEIVRTGAPDSANRSNLF
                     HTIVGHYVGCGWDAERILQHLQQFPGGIGGRYLSEGRLSGEIARSASKYADAAPLFNN
                     SWANGFEAKAPPPQPEAPAAPQQDPELEDEDRDPELEDDPELEEKPDPKLPALFAHGD
                     ADPRPLKSWLIKHLIPACGHGLLSGQWGAGKTFVVFDLAAALATCQPFLGHVVKRQCG
                     VLLIAAEGADEVRLRLDAVIRAKCGDMQRAPFRWYETTPMLLHKGSVETLIAMARQAQ
                     ASLQQEFGLPLGLIVIDTIAACAGYARAGDESDPAAGQAVMNVLKAIAQAIGCFALGV
                     DHFGKNLEAGTRGASSKEAAGDLVLACLGDKQLSGNVENTRLAVRKNRGGQQGKEYPY
                     TLRIVEAPEPDEDGEPVSTMVVDWVPAPAAGTAQPEQDP"
BASE COUNT          332 a          494 c          567 g          268 t
ORIGIN      
        1 gctcatggca tcagctatat tttgacggcg gatgatccgt ttgccgcgat cgacctcgat
       61 cactgccgcg acgtgaacac taacagtatc gacgtgtggg cgcagaattt cctcgactgc
      121 gggcgccaca cgtacagtga agttacgccg agcggcgccg gctgccggat ctggggactg
      181 gcgagcggcg acagcctgca caagaaattc acactggaga tcgacgggaa gtcgatcgcc
      241 gcggaattat tccggcgcac caacaaggcg ctgacaatca ccggctacaa gctcgacata
      301 atccaggagc tggccaacat cgatcgtgtg ctcgactggg ccgtgatctg gggcgagcgc
      361 cgcaaggctg cagctgcgga agctgctgcg ccggctacct gcaatgactt taacggcaat
      421 ggtagcgggt acagcgtcga gcagatcgag gagatcgtgc gcaccggcgc gccggacagc
      481 gccaaccgca gcaacttgtt tcacacgatc gtgggccact atgtcggctg tggctgggac
      541 gctgagcgga tcctgcaaca tttgcaacaa ttccccggag gcatcggcgg ccgctatctc
      601 agtgaaggcc ggctgagcgg tgagatcgcc aggagcgcca gcaagtatgc cgatgcggcc
      661 ccactgttca acaacagctg ggccaacggc tttgaggcaa aggcaccacc gccgcaaccg
      721 gaagcgccgg cggcgccgca gcaggatcct gagctggagg acgaggaccg ggatcccgaa
      781 ttggaggacg accctgagct cgaggagaag ccggatccca agttgccggc attgtttgca
      841 cacggcgacg ctgatccgcg gccgctcaaa agctggctga tcaaacacct gatcccggcc
      901 tgcggacatg ggctgctcag cggccagtgg ggcgccggca agacctttgt cgtgtttgac
      961 cttgccgctg cactggcaac ctgccagcca ttcctgggcc atgtcgtaaa acgccagtgc
     1021 ggcgtgctgc tgatcgccgc agaaggtgca gatgaggtgc ggctgcgcct ggatgcagtg
     1081 atccgtgcca aatgcggcga catgcagcgg gcgcctttcc gctggtacga aaccacgccg
     1141 atgctgctgc acaagggatc agtggagacg ttgatcgcta tggcgcggca ggcgcaggcc
     1201 tcgctgcagc aggaatttgg gctgccgctg ggtctgatcg tgatcgacac gatcgccgcc
     1261 tgtgccggct acgcgcgtgc cggcgatgag agcgaccccg ccgccggcca ggcggtcatg
     1321 aacgtgctca aggcgatcgc acaggcgatc ggctgcttcg cgctgggcgt tgatcacttc
     1381 ggcaagaatt tggaggctgg cacaaggggt gcctcttcta aggaagccgc cggcgacctg
     1441 gtgctggcct gcctgggcga caagcagctg agcggcaacg ttgagaacac gcggctggct
     1501 gtgcgtaaga accggggcgg ccagcaaggc aaggagtacc cctacacgct gcgaatagtg
     1561 gaggcgccgg agccggacga ggacggcgaa ccggttagca ccatggtggt ggattgggtg
     1621 ccggcgccgg cagcaggtac ggcgcagccg gagcaggatc c
//
LOCUS       DASQCV010000364         2468 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1240183, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000364 DASQCV010000000
VERSION     DASQCV010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1240183"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..768
                     /locus_tag="VEQ16_05490"
     CDS             <1..768
                     /locus_tag="VEQ16_05490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63318.1"
                     /translation="GIAITAGLWGWAGCNWGGGNVNVNVNRYNNLNTNRTANRQRLQN
                     SNWQPQRGQGGQGAGNRRPPGGPVGRPARANGLPANGIGRSSVSAPGNISRPPGGLGP
                     NRNNPAIGNGNRPGAGQGGRPNGPGGNGGRPPGAGQGAGRPNGPGGNGGRPAAGQRPS
                     VNGGPGANGGGNRAGAGNRAGGGQRPQARSNRQGGAGLSGQRQGRSAGQFGQRGAQSR
                     QSMRSAGGGGGRRAGGGGGGRGGGGRGGGGRGGGGRR"
     gene            768..1694
                     /locus_tag="VEQ16_05495"
     CDS             768..1694
                     /locus_tag="VEQ16_05495"
                     /inference="COORDINATES: protein motif:HMM:NF022892.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2950 domain-containing protein"
                     /protein_id="HYP63319.1"
                     /translation="MHRLVRFVLPLAAALAFAAPSFAAQTSFATPQDAVDALISAVKA
                     QNKPALVAMFGAGGEKLIYSGDEVADTAAGKEFTDSYAQSHSLSKQQDGSEILIVGDD
                     DWPFPIPLEQVDGKWQFNTEAGIEQVLDRRIGRNELLTIQTLLSVVAAEEDYYNRVQR
                     GTGTGFYTPKLFSTPGQEDGLYWDAGPGEPASPLAPLIASAQDDGYPGAPAPDGKQLP
                     YRGYYFHVLTGQGPNAPGGAMDYVHDGKWTEGFGIVAWPARYGNSGVMTFIVDEDGIV
                     FQKDLGDDTAKQAAAMTLFDPDTSWTRIDLSK"
     gene            complement(1684..1932)
                     /locus_tag="VEQ16_05500"
     CDS             complement(1684..1932)
                     /locus_tag="VEQ16_05500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63320.1"
                     /translation="MQTSGCAALPSRDDLWRINNILSIDKYIYFWAHAEILANFLSIC
                     RNFKNKSIKQDISWRVFLKPSLAARRAAFAATSGRFIC"
     gene            2039..2251
                     /locus_tag="VEQ16_05505"
     CDS             2039..2251
                     /locus_tag="VEQ16_05505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63321.1"
                     /translation="MPQNTKTSNAGLGKKLPREREAFAGVIGRTVDESKIHRRRVPQA
                     PEGAPNILLVMLDDAGYAIPAPSAAT"
BASE COUNT          479 a          742 c          805 g          442 t
ORIGIN      
        1 ggtattgcca tcaccgctgg gctgtggggc tgggcgggtt gcaactgggg cggcggcaat
       61 gtcaatgtga atgtgaatcg ctacaataat ctcaacacca accggaccgc caaccggcaa
      121 cggctgcaga actccaattg gcagccccag cgcgggcagg gcgggcaggg cgccggcaac
      181 cgccgtccgc ctggagggcc ggtggggcgc ccggcgcggg cgaatggcct gcctgccaac
      241 ggcattggcc ggtccagtgt ttcggcgccg gggaatatct cccggcctcc gggcgggctt
      301 ggccccaacc gcaataatcc tgccatcggc aatggcaaca ggcccggtgc tggccagggc
      361 gggcggccca atgggccagg ggggaatggc ggcagaccac ctggtgctgg ccagggtgcc
      421 gggcggccca acgggcccgg aggcaatggc ggcagacccg cggcgggcca gcgtccctcg
      481 gtcaatggcg gcccgggtgc caatggcggc ggtaacaggg ctggcgcagg caacagggcc
      541 ggcggcggcc agcgtcccca ggccaggagc aacaggcagg gcggtgccgg actctccggc
      601 cagaggcagg gtcgctcggc cgggcagttc ggccagcgcg gcgcgcagag ccggcaatct
      661 atgcgcagcg cgggcggtgg cggcgggcgc cgcgctggcg gcggtggcgg cggacgtggt
      721 ggtggcgggc gtggtggcgg cggacgcggt ggcggggggc gcaggtgatg cacaggctgg
      781 tacgtttcgt ccttcccctg gctgcggcgt tggcctttgc cgcgccttcc tttgcggcac
      841 agaccagctt tgccacaccg caggacgcgg tcgatgccct aatcagcgcc gtgaaggcgc
      901 aaaacaagcc agctttggtc gccatgttcg gtgcaggcgg cgagaagctg atctattctg
      961 gcgatgaggt ggccgacact gctgctggca aggaattcac agattcctat gcgcaaagcc
     1021 acagcctgtc caagcagcaa gacggcagcg agattctgat tgttggcgat gatgactggc
     1081 cctttcccat cccgctggag caggtggatg gcaaatggca attcaatacg gaagctggga
     1141 tcgagcaggt tctcgaccgc cgcatcggcc gcaacgaatt attgacgatc cagaccctgc
     1201 tttccgtcgt tgctgccgaa gaggattatt acaatcgcgt tcagcgcggt acgggcacgg
     1261 gtttctatac gccaaagctg ttcagcaccc ccggacagga ggatgggctt tattgggacg
     1321 ccggccctgg cgagcccgcc agcccacttg caccgctgat cgcatccgcc caggacgatg
     1381 gctatccagg cgctccggcg ccggatggca agcagcttcc ctatcgcggt tattatttcc
     1441 atgtccttac ggggcagggg ccgaatgcgc cgggcggggc gatggattat gtgcatgatg
     1501 gcaaatggac cgaaggtttt ggtatcgtcg cctggccagc ccgctacggc aattccggcg
     1561 ttatgacatt catcgtcgat gaggacggaa tcgtgttcca gaaggatctg ggtgacgata
     1621 cggccaagca ggcggcggcg atgaccctgt tcgatcccga cacgagctgg acgcggatcg
     1681 atctcagcaa ataaacctgc ctgaagttgc ggcaaaggca gctcttcggg cggcaagcga
     1741 tggtttgaga aaaacccgcc aggatatatc ctgttttata gatttatttt tgaaatttct
     1801 gcagattgaa agaaaattag caagaatttc tgcgtgcgcc caaaaataaa tatatttgtc
     1861 gatagacaaa atattattta tccgccacag atcgtcccgg cttggcaagg ccgcgcagcc
     1921 ggaggtttgc atgcgcccaa cataattatg ttcctatata agaatgtttt tcgttgcggc
     1981 gtcctgctcg cgcggacgca ggatctgcgc caaattaatt ccaaaaagaa acgaaaagat
     2041 gccccagaac acaaagacgt ccaacgccgg cctcggcaaa aaactgccgc gcgagcgaga
     2101 agcctttgcc ggcgtgatcg gccgcaccgt cgatgagtca aaaatccacc gccgccgcgt
     2161 tccgcaggcg cccgagggcg cgcccaacat cctgctcgtc atgctcgacg atgccggcta
     2221 cgccatcccg gcgccttcgg cggcaacata gacactccga ccttcgaccg catcggcggc
     2281 aacgggctgt tctataaccg ctttcataat accggcctgt gctcgcccac gcgcgccgcc
     2341 ttgctctcca ggcgcaacca tcatgccgtg gggttcggcg ttatttccga tctttccgcc
     2401 ggctatcccg gctatgatgg ctggtggccg aaatccgccg ccagcatcgc cgaggtgctg
     2461 cgcctgaa
//
LOCUS       DASQCV010000365         3211 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2732842, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000365 DASQCV010000000
VERSION     DASQCV010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3211
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2732842"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..557)
                     /locus_tag="VEQ16_05510"
     CDS             complement(<1..557)
                     /locus_tag="VEQ16_05510"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP63322.1"
                     /translation="MRTKQARQTPADLCDTVAHTPPSEATSSAPDPRAVKSGQALRAA
                     LLTLLEHKPLEQITIREIAAGAGVHYATFFRHHPTKEALLDDVAADQIDRLVALTLPI
                     LDAAGSDASFLALANYVDEHRRLWTTLLTGGASAAMRAELLRISREVAAERAPRETPI
                     PVDLAVTCTVSLIVEILSWWLKQPSG"
     gene            630..947
                     /locus_tag="VEQ16_05515"
     CDS             630..947
                     /locus_tag="VEQ16_05515"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYP63323.1"
                     /translation="MPQIFVTTAKGETHVLDAESGITAMMAIRNAGLEGMLALCGGVC
                     SCATCHVHVDPSSAAMLGEMSEDENDLLDGSIRRNGQSRLACQILLTGKLEGLRLTIA
                     DED"
     gene            994..2268
                     /locus_tag="VEQ16_05520"
     CDS             994..2268
                     /locus_tag="VEQ16_05520"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HYP63324.1"
                     /translation="MQDLADRDYFTDHSILLDPYAYFEALRAKGPIYRLPGRDIFVVT
                     GFEESLEVLNNNADFSSSVSTGGAAAPLPFTPEGDDLTGQIEAHREQFLGGELLVARD
                     DRPHSNSRALLSRLFTPSRLKANEEYMTSLAGKLVSDAVAKGRCDLIKDIAVPFATLV
                     IADLLGVPPNDRDHFMEVIAAGVPPGSLDEEERSDQNQPLVVMAGFFVNYLMERKQAP
                     RDDVLTELASASFPDGTTPDIAELVRLSTFLFGAGQDTTAKLLGNAMRFIIEQPGLQD
                     QLRSDTSLLPAFIEEVLRLEGSTKMTSRLVRKSTKVGGMDIPVGTKVMVALAAANRDP
                     RRYENPRDFVIGRPKIKEHLAFGRGAHVCIGAPLARVEIRIVLEKFLQKTSNIDLDET
                     VHGPRGARKLAYEPSFIIRGLEELQLKLTPRQ"
     gene            2288..3037
                     /locus_tag="VEQ16_05525"
     CDS             2288..3037
                     /locus_tag="VEQ16_05525"
                     /inference="COORDINATES: protein motif:HMM:NF009466.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63325.1"
                     /translation="MNENRVVVVTGGASGMGLGISQLFAANGHPVAMLDVQEEALKHE
                     SEALKAKGTKIYAACVDVSNRAQIDIAYAAIRKELGPISIVIANAGISKAEDFITMPV
                     EVWQRMIDVNLNGVFHSIQAAVPDMVAAKWGRIVTISSNAAQWGSSDRAHYSAAKGGV
                     IGLTKALARELAKYNITSNTIPPSLVDTPLARKGAAAGEVPPIEVLAQHIPIARAGTP
                     EDIANACEFLCSDKASYITGQEINVNGGIYM"
BASE COUNT          611 a         1062 c          954 g          584 t
ORIGIN      
        1 ccagacggct gcttcaacca ccaggagagg atttccacga tcaggctcac cgtgcaggtc
       61 acggcgagat ccaccgggat cggcgtctcc cgcggggcgc gctccgccgc cacttcccgc
      121 gagatgcgca gcagctccgc ccgcatcgcg gcacttgccc cgccggtcag caaggtcgtc
      181 caaaggcggc gatgctcgtc cacataattg gccaaggcga gaaatgaggc atcgctgcct
      241 gctgcgtcca gtatcggcag ggtcagcgcc accagccggt cgatctggtc cgccgccacg
      301 tcatccagca gcgcctcctt ggtggggtgg tggcggaaga aggtggcgta atgcactccg
      361 gccccggcgg cgatctcgcg tatggtgatc tgttccagcg gcttgtgttc cagcagggtc
      421 agcagcgcgg cgcgcagagc ctggcccgat ttcaccgcgc gcgggtccgg cgcgcttgac
      481 gtcgcctctg atggaggtgt atgcgccaca gtgtcgcata aatcggctgg ggtctgcctt
      541 gcctgttttg tcctcatctc tcaacctttg gccgcgcgcc gcctgattgt tgcgcgtggt
      601 accgcctaac acagaacgag cccgatggaa tgccgcaaat cttcgtgacc accgccaaag
      661 gcgaaactca tgtgctcgat gccgagtcgg gcattaccgc catgatggcc atccgcaatg
      721 ccgggctgga gggtatgctc gccctctgcg gcggtgtttg ctcctgcgcc acctgccatg
      781 tgcatgtcga cccgtcttcc gccgccatgc tgggcgagat gagcgaggat gagaacgatc
      841 tgctcgacgg ctccatccgc cgcaacggcc aatcgcgctt ggcctgccag atcctgctca
      901 cgggcaagct cgaaggattg cgcctgacca tcgctgacga ggactgaccc gccgcgcttc
      961 caagaaccac ataaatagac cgggagtata acgatgcaag acctggccga ccgcgattac
     1021 ttcaccgacc attcgatcct tctcgacccc tatgcctatt tcgaggcgct gcgcgcgaaa
     1081 ggccccatct accgcctgcc ggggcgcgat atttttgtcg tcaccggctt cgaagaatcg
     1141 ttggaagtgc tgaataacaa tgcggatttc tcctcctccg tctccaccgg cggcgctgcg
     1201 gcgcctttgc ctttcacccc ggagggggac gacctcaccg gccagatcga ggcgcatcgc
     1261 gagcaattcc taggcggcga gctgctggtg gcgcgtgacg accgccccca ctccaattcc
     1321 cgcgccttgc tcagccggct ttttacgccc tcgcgcctga aggcgaatga ggaatatatg
     1381 accagtctcg ccggcaagct cgtgagcgac gcggtggcca aaggcagatg cgatctcatc
     1441 aaggatattg ccgtgccttt cgccacgctg gtgatcgccg acctgctcgg cgtgccgcca
     1501 aacgaccgtg accatttcat ggaagtcatc gccgccggtg tgccgccggg aagcctggat
     1561 gaggaggagc gcagcgacca gaaccagcct ctggtggtga tggccggctt cttcgtgaat
     1621 tacctcatgg agcgcaagca ggcgccgcgc gacgatgtgc tcaccgaact ggcctcggcc
     1681 agcttcccag acggcactac gcccgacatt gccgagcttg tccgcctctc caccttcctg
     1741 ttcggcgccg gacaggacac gacggcgaaa ttgcttggca atgcgatgcg cttcatcatc
     1801 gagcagcctg gcctgcagga tcaactgcgc agcgatacct cgctgctccc cgccttcatc
     1861 gaggaagtgc tgcgcctcga gggttcgacc aagatgacct cgcgcctggt gcggaagagc
     1921 accaaggtcg gcggcatgga cattcccgtc ggcaccaaag tgatggtggc actcgccgcc
     1981 gccaaccgcg atccgcgccg gtatgaaaac ccgcgggact tcgttatcgg ccggccgaag
     2041 atcaaggagc atctcgcctt tgggcgtggt gcgcatgtct gcatcggcgc cccgctggcc
     2101 cgtgtcgaaa tacgcatcgt gctggagaaa ttcctgcaga aaacctcgaa catcgacctc
     2161 gacgagacgg tgcacggccc gcgcggggca cgcaagctgg cttacgagcc gagtttcatc
     2221 atccgcgggc tggaagagct gcagctgaaa ctcacaccgc gccaataatc caaaacggga
     2281 gagaaacatg aacgaaaatc gtgtcgtcgt cgtcaccggc ggtgcctccg gcatggggct
     2341 gggcatttcc cagctcttcg ccgccaatgg ccatcccgtc gcgatgctgg acgtgcagga
     2401 agaagcgctc aagcatgagt ccgaggcgct gaaagccaag ggcacgaaaa tctacgccgc
     2461 ctgcgtagat gtctccaacc gcgcgcagat cgacatcgcc tacgccgcca tccgcaagga
     2521 actcggcccc atctccattg tcatcgccaa tgctggtatt tccaaggccg aggatttcat
     2581 caccatgccg gtggaagtct ggcagcgcat gatcgatgtg aatctgaatg gcgtgttcca
     2641 cagcatccag gcggcggtgc cggacatggt cgcggcgaaa tgggggcgca tcgtcaccat
     2701 ttcctccaac gcggcgcaat ggggctcatc cgaccgcgcc cattattccg ccgccaaggg
     2761 cggcgtcatc ggtctcacga aagcgctggc gcgtgagctg gccaaataca acatcacctc
     2821 caacaccatc ccaccctcgc tggtggacac gccactggcc cgcaaaggcg ccgccgccgg
     2881 tgaagtgccg cccatcgagg tgcttgccca gcatattccc atcgcccgtg cgggcacccc
     2941 ggaggacatc gccaatgcct gcgagttcct gtgctctgac aaagccagct acatcaccgg
     3001 ccaggagatc aatgtgaacg gcggcatata catgtaagta aaatgatgcg cgggaggtca
     3061 ccccttccgc gctatcacca tctgcgtctt gggttgcaga tcatccagcg catgtttcac
     3121 ggccggacca ttaggttggt ccagcaaaat ctgccaggtc cgcgcccagc tttccagcag
     3181 cggatgttcc ggccggtcga acgggacgcc g
//
LOCUS       DASQCV010000366         4687 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1408024, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000366 DASQCV010000000
VERSION     DASQCV010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4687
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1408024"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(38..553)
                     /locus_tag="VEQ16_05530"
     CDS             complement(38..553)
                     /locus_tag="VEQ16_05530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63326.1"
                     /translation="MSSSPKRAASLLALLALAGCGFTPLYGGDGGQEASAQLGEIAVN
                     NIPDRTGQMLRISLETKLHANGAPVTELYALTVSYGIATTDIGVLQDSATTYSRMAAT
                     ANWRLTPIGDPAHPLTTGTATALDSANIIDQQYFALTMETETVNQRLADSVAAQIATQ
                     LAIWFRNHPSA"
     gene            complement(537..3113)
                     /gene="leuS"
                     /locus_tag="VEQ16_05535"
     CDS             complement(537..3113)
                     /gene="leuS"
                     /locus_tag="VEQ16_05535"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HYP63327.1"
                     /translation="MSDTETARYDFAQAEPHWQAKWEEASCFAAADVPASDKPKYYVL
                     EMFPYPSGKIHMGHVRNYTLGDVVARYKRAQGFDVLHPMGWDAFGLPAENAARENKAD
                     PADWTYANIANMRGELKRMGFSLDWAREFATCDAEYYGQQQKIFIDFWKAGLVERRDA
                     FVNWDPVDMTVLANEQVIDGRGWRSGALVEKKKLSQWFLKITDFAPELLDGLNTLDRW
                     PERVKLMQENWIGYSQGAEVHFALAAPVAGIEDVTVYTTRPDTLFGMSFLAIAPEHPI
                     AQAVAAQNAGAAAFVAECASQGTSEAVIEMAEKRGFATGLEVVNPFNGVKYPVWIANF
                     VLMEYGTGAIFGCPCGDQRDLEFARKYDLPVPVVVAPNKDEIPEIGAKALDGDGVIVN
                     SGFLTGLSTADAKPAAIAELEKIGAGKGVTNWRLRDWGISRQRYWGCPIPVIHCEACG
                     PQPVPDDELPVVLPRDVSFEKPGNPLDHHPTWNKVNCPSCGKPARRETDTFDTFIDSS
                     WYFARFCSPHAVGPTNLDAVNHWLPVDQYVGGIEHAILHLLYARFFTRAMEKTGYVTV
                     KEPFAGLFTQGMVTHESYKDEDGNWLYPDDVVKGADGAVQRGNLRPVVVGRVEKMSKS
                     KRNTVDPGAIVDRFGADTARWFVLSDNPPERDVEWTETGVQGSYRFVQRLYRLALQVA
                     AEPRVAAPAEISGEAKKLRQLTHRTIAAVTEALDSFAFNLAVAKLYELTGAVSGLGTG
                     TDEQVFARFEGAETIARLVAPMMPHLGEEIFAKLRPDAGLVARQPWPKADPALLVVDE
                     VTIAVQVNGKLRGTVLVPAGQAAEPTLAAAETAVASVLAGQTIVKKIHVPDRIVNFVV
                     KP"
     gene            complement(3329..4105)
                     /locus_tag="VEQ16_05540"
     CDS             complement(3329..4105)
                     /locus_tag="VEQ16_05540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012973932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP63328.1"
                     /translation="MDLGLKGRTALVCAASAGLGFGCAEALAREGVAVTISGRDAAKL
                     AAAAAKLRGIGPEIRVAPGDITTEAGRRVALEACPMPDILVNNAGGPPPGDFREFSEA
                     QWLAALNANLLTPIALIRSVLDGMIIRKFGRIVNITSASVKSPIASLPLSNTARTGLT
                     GFVAGVARDVARHNVTINNLLPGPFATDRQIAISAAASKASGKSPEEESAARAAKNPA
                     GRFGTAEEFGAACAFLCSAQAGFIVGQNILLDGGAFNSTM"
     gene            complement(4204..>4687)
                     /locus_tag="VEQ16_05545"
     CDS             complement(4204..>4687)
                     /locus_tag="VEQ16_05545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007439404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HYP63329.1"
                     /translation="VISHDDGQANRGIGEADVVLVGVSRSSKTPTCFYLANRGIKALN
                     IPLVPGIEPPEQLNDPPCPVVGLTIDPKSLIDIRRHRVQLINTGAQIGFAKSENTDYV
                     DYEAVEKELLWARRLCNARGWPTIDVTRRSIEETAATVLKLMENWHNKHDKLGKQGQN
                     "
BASE COUNT          950 a         1663 c         1218 g          856 t
ORIGIN      
        1 gatttcagaa acgcgtcgat gcggcctgaa tcgagcttca tgcgctgggg tggttgcgga
       61 accagatagc gagctgggtg gcaatctgcg ccgccacgct gtcagccagg cgctggttga
      121 cggtctccgt ctccatcgtc agtgcgaaat attgctggtc gatgatattc gctgaatcca
      181 gtgccgtggc cgtccccgtg gtcagaggat gagctggatc gccaatcggt gtcaggcgcc
      241 aattcgccgt ggccgccatg cgcgaatagg tcgtcgcgga atcctgcaac acgccaatat
      301 cggtggtggc aatgccatag ctcacggtca gcgcataaag ctccgtcact ggcgcgccat
      361 tcgcatgcag ctttgtttcc aggctgatgc gcagcatctg ccccgtccgg tcgggaatat
      421 tattcaccgc gatctcgccg agctgcgcgc tggcttcctg ccccccatcg ccgccataaa
      481 gcggcgtgaa gccacagccg gccagggcca gcagagcgag gagcgaagcg gcgcgcttag
      541 ggcttgacga caaaattgac gatcctatcc ggcacatgga ttttctttac aatggtctgc
      601 ccagccagaa cagacgccac cgcggtctct gccgccgcca atgtcggctc cgccgcctgg
      661 cctgccggca cgagcaccgt gccgcgcaat ttgccattca cctgcaccgc tatggtcacc
      721 tcatccacca ccagcagcgc cggatcagcc ttcggccagg gctgccgcgc gaccaaaccg
      781 gcatccggac gaagcttggc aaaaatctcc tcacccagat gcggcatcat tggcgccacc
      841 agccgggcaa tggtctccgc gccctcgaac cgcgcgaaaa cctgctcatc cgtcccggtg
      901 ccaaggccgg aaaccgcccc ggtcaactca tagagcttcg ccaccgccag attgaaggcg
      961 aaactatcca gcgcctccgt caccgcggcg atggtccggt gcgtcagctg gcgcaatttc
     1021 ttcgcctcgc ccgaaatctc cgcaggcgcc gccacgcgcg gctccgccgc cacctgcagt
     1081 gccagccggt acaaacgctg cacgaagcgg taagacccct gcacaccggt ctcggtccac
     1141 tccacgtcac gctccggcgg attatcagac agtacaaacc agcgcgccgt atcggcacca
     1201 aaacggtcga cgatcgcgcc aggatccacc gtattccgtt ttgacttcga catcttctcg
     1261 acacggccga caaccaccgg ccgcaagttg ccgcgctgca cggcaccatc cgcgcccttc
     1321 accacatcat cgggataaag ccagttgccg tcttcatcct tgtaggattc atgcgtcacc
     1381 ataccctgcg tgaacagccc ggcaaacggc tccttcaccg ttacataacc ggtcttttcc
     1441 atcgcgcggg tgaaaaaccg cgcatagagc agatgcagaa tcgcatgctc gatcccgccc
     1501 acatattggt ccaccggcag ccaatggttc accgcatcca gattggtcgg ccccaccgcg
     1561 tgcggcgaac agaaccgggc aaaataccag gagctgtcga tgaacgtatc gaacgtatcc
     1621 gtctcccggc gcgctggctt gccgcaggag gggcaattca ccttgttcca ggtgggatga
     1681 tgatcaagcg gattgcccgg cttctcgaaa ctcacatccc tcggcagtac caccggcagc
     1741 tcatcatccg gcacaggttg cggaccgcaa gcctcgcaat ggatcaccgg gatcgggcag
     1801 ccccaataac gctggcggga aatcccccaa tcgcgcaacc gccaattggt cacgcccttg
     1861 ccggcaccga tcttctccag ctccgcaatc gccgccggct tggcatccgc cgtggaaagc
     1921 ccggtcaaaa acccggaatt gacgatcacc ccgtcgccat ccagcgcctt ggcgccaatc
     1981 tccgggattt catccttgtt tggcgccacc acaaccggta ctggcagatc atatttccgg
     2041 gcaaattcga ggtcacgctg gtccccgcac gggcagccga aaatcgcgcc cgtgccatat
     2101 tccatcaaca cgaaattcgc gatccagacc gggtatttca cgccattgaa cggattgacc
     2161 acctccaacc cagtcgcaaa accgcgcttc tccgccatct cgatcaccgc ttcggacgtg
     2221 ccctggctgg cgcattcggc aacaaaagcc gccgcccccg cattctgcgc cgccacagcc
     2281 tgggcaatgg gatgctccgg cgcgatcgcc aaaaacgaca tgccgaacaa cgtatccggc
     2341 cgcgtcgtat aaacggtgac gtcctcaatc cccgccacgg gtgctgccag agcaaaatgc
     2401 acctccgcgc cctgcgagta gccaatccag ttttcctgca tcagcttcac ccgctccggc
     2461 cagcggtcga gcgtgttcag cccgtccagc agctccggcg cgaaatcggt gattttaaga
     2521 aaccattgcg aaagcttctt cttctccacc agcgcgcccg agcgccagcc ccgcccatcg
     2581 atgacctgct cattggccag cacggtcata tccacagggt cccagttcac gaacgcatcg
     2641 cgccgctcaa ccagccccgc cttccagaaa tcgatgaata tcttctgctg ctggccataa
     2701 tattcggcat cgcaggtggc gaattcacgc gcccagtcta gcgagaaccc catgcgcttt
     2761 agctcgccgc gcatattggc aatattggca taggtccaat ccgccggatc ggccttattc
     2821 tcccgcgccg cattctccgc cggcagcccg aatgcatccc accccatcgg gtgcagcaca
     2881 tcgaaaccct gcgcccgctt ataacgcgcc accacatcgc ccagcgtgta gttgcgcaca
     2941 tgccccatat ggattttccc ggaagggtac gggaacatct ccagcacata atatttcggc
     3001 ttgtcgctgg ccggcacatc ggcggcggca aagcagctgg cttcttccca tttggcctgc
     3061 caatgcggct cggcctgggc aaaatcataa cgcgcggttt cggtatctga catggcgccc
     3121 cgtcttatcc gccgggacgc agcaagccaa ggcccgccgc cagaactcta ctccggtggc
     3181 cgcctgacgg cgattttctg cggttgcgag cgcgcgccac tggttcgagc gcgcgaagca
     3241 acagtgctca cgtactgtag tacgctccgc tccggtgctc aaaaatcacc gtcagccgac
     3301 tcaccagagc gagttctggc aaaagctact acatcgtgga attgaaagcc ccgccatcga
     3361 gcagaatatt ctgccccacg ataaaaccag cctgggccga gcacagaaac gcacaagccg
     3421 ccccgaattc ctccgccgtg ccaaaccgcc ccgctgggtt cttcgccgcc cgcgccgcac
     3481 tctcttcctc cgggctcttg cccgaagcct tcgaggccgc cgccgagatg gcaatctgcc
     3541 tatccgtcgc aaacggcccc ggcagcagat tattgatggt cacattatgc cgcgccacat
     3601 cccgcgccac cccggccacg aaaccggtca gcccggtgcg cgccgtattc gagagcggca
     3661 ggctggcaat cggcgatttc acggaagccg aggtgatatt cacaatccgc ccgaatttgc
     3721 ggatgatcat cccatccagc acggaacgga tcagcgcgat cggcgtcagc aaattcgcat
     3781 tcagcgccgc cagccattgc gcctcggaaa attccctaaa atcgccaggc ggcgggccac
     3841 cggcattatt caccaggata tccggcatcg ggcaggcttc caaagccacc ctccgcccgg
     3901 cctcggtggt aatatccccc ggcgccacgc gtatctccgg cccgatcccc cgcaatttcg
     3961 ccgccgccgc cgccagcttc gcagcatcac ggcccgagat cgtcaccgcc acaccctcac
     4021 gggccagcgc ctccgcacag ccaaaaccca acccagcgct cgcggcacaa accaaggccg
     4081 tccggccctt aagtcccaga tccatggcgt ctcatataga gttgcaacga acgaaaccaa
     4141 gacaagcaag taaggccagg gctctgccct ggacccgctg gggcctgagg ccccagaccc
     4201 ccattagttt tgcccttgtt tgcccagctt gtcgtgcttg ttgtgccaat tctccatcag
     4261 cttcagcaca gttgccgccg tctcctctat cgagcgcctg gtcacatcga tggtcggcca
     4321 gcccctggca ttgcacagcc gccttgccca gagcagttcc ttttccacag cctcataatc
     4381 cacataatca gtattctcgc tcttcgcgaa accgatctgc gcgcctgtgt tgatcagctg
     4441 caccctgtgc cggcggatat cgatcagcga tttcgggtcg atggtcagcc ccaccacagg
     4501 acagggcgga tcattcaatt gctccggcgg ctcaatcccc ggcaccagtg gaatattcag
     4561 cgccttgatg cccctgttgg ccaggtaaaa gcaggtaggg gttttcgagg agcgcgaaac
     4621 ccccaccagt accacatccg cctcgccaat gccgcgatta gcctgcccgt catcatggct
     4681 gatgacg
//
LOCUS       DASQCV010000367         1852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1740782, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000367 DASQCV010000000
VERSION     DASQCV010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1740782"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..769)
                     /locus_tag="VEQ16_05550"
     CDS             complement(<1..769)
                     /locus_tag="VEQ16_05550"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63330.1"
                     /translation="MRLKGKIAVITGAGSGMGKAMAQMFAAEGAKLVLADISGQQDEV
                     AASLGDAAIAVHANVAEEENVRNMIETAEKSYGRIDILCNNAGFGGGMAPLHEQSTEA
                     WDRVHDVNLRGVFFGMKYGVMSMMKTGGGSIVNTTSASGVVGWKHHSIYGAAKAGVNQ
                     MTKTAALDYANYKIRVNAVAPGTIWTGLVPASKTHAEPPPGAPTLAGIPLNRWGLASE
                     IASAALFLASDEASYITGVILPVDGGYCIGFSGMGAEN"
     gene            920..>1852
                     /locus_tag="VEQ16_05555"
     CDS             920..>1852
                     /locus_tag="VEQ16_05555"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HYP63331.1"
                     /translation="MPLLTKRAFLAGLAVTPCFAKLATAETPLFAPEPGAWKQYQVTT
                     TVNLAAAQNEAQAWIPLPSVSNPDWVKPLGTDWQGEGFSAQELDVDGAKMVHVIWVKG
                     SAAPSITVRNQFASRDRAVDWNKPGKVAPLSEADRDLYTGATRYIPVTGQIKQLSDKI
                     TAGATGDRAQVQALYEWMVCNTYRDGKVLGCGTGDVASMLKLANFGGKCADLNGLFVG
                     LVRAAGIPARDIYGIRVAPSAFGYHSLGAKTEDVTKAQHCRAEVFLTDYGWVAMDPAD
                     VRKVMLEEVKGGLPLTDPRVDAARHALFGSWEGNW"
BASE COUNT          342 a          619 c          553 g          338 t
ORIGIN      
        1 tattctccgc gcccatcccc gagaacccga tgcaataccc gccatccact ggcaaaatca
       61 cacccgtaat gtaggaagcc tcatcactcg ccaggaacaa agcggctgag gcaatttcgc
      121 tcgccagccc ccagcggttc agaggaatgc ccgcgagcgt tggcgcgccc ggcggcggct
      181 cggcatgggt cttcgaggcc ggcaccagcc cggtccagat cgtgcccggc gccaccgcat
      241 tcacgcggat cttgtagttg gcgtagtcca gagccgccgt cttggtcatc tggttcacgc
      301 ccgccttggc cgcgccatag atggagtgat gcttccaccc caccacacca gaagccgagg
      361 tggtgttgac gatggagccg ccccccgtct tcatcatcga catcacgcca tatttcatgc
      421 cgaagaacac gccgcgcaga ttcacatcat gcaccctgtc ccacgcctcg gtgctctgct
      481 cgtgcagcgg cgccatgccg ccgccgaaac cggcattgtt gcagagaata tcgatgcgcc
      541 cgtagctctt ctcggcggtc tcgatcatat tccgcacatt ttcttcctcg gccacattgg
      601 catgcacggc gatggcggca tcgcccaggg acgccgccac ctcgtcctgc tggccgctaa
      661 tgtccgccag caccagtttc gcgccctcgg cggcgaacat ctgcgccatg gccttgccca
      721 tgcccgagcc tgcgcccgtg atgaccgcaa tcttgccctt cagtctcatc cccaaatccc
      781 ttatattacc gcggcgtatt tgccgcccgc ggcctccgtt cccaacaaag cggcctaagc
      841 cgccaaccgc gcgagcgggt ttgcaaaacc ataagagcct gcgctagcac catgctaagg
      901 aactgttcag gaggagtcca tgccactttt aaccaaacgt gcttttcttg ccgggcttgc
      961 ggtaactcct tgttttgcca agcttgccac agcggagacg ccgctctttg cgccagagcc
     1021 gggggcgtgg aagcaatatc aggttaccac cacagtcaat ctcgccgcag cgcagaacga
     1081 ggcccaggcc tggattccgc tcccctccgt cagcaacccg gattgggtga agccgctggg
     1141 cacggactgg cagggcgaag ggttttcggc gcaagagctg gacgtggatg gtgccaaaat
     1201 ggtgcacgtc atctgggtca agggcagcgc ggcgccgtcc atcacggtcc gcaaccaatt
     1261 cgcctcgcgc gaccgcgcgg tggactggaa caagcccggt aaggtggcgc ctctgagcga
     1321 agcggaccgt gatctctaca ccggggccac gcgctacatc ccggtcaccg ggcagatcaa
     1381 gcaattgtcc gacaaaatca ccgccggcgc cacgggcgac cgcgcccagg tgcaggcgct
     1441 ttatgagtgg atggtgtgca acacctatcg cgatggcaag gtactgggct gcggcacggg
     1501 cgatgtggcg tcgatgctga aactggccaa tttcggcggc aaatgcgccg acctcaacgg
     1561 gctgttcgtc gggctggtgc gcgccgccgg cattccggcg cgcgacatct acggcattcg
     1621 cgtcgcgccg tcggccttcg gctatcacag cctgggcgcc aagacggaag acgtcaccaa
     1681 ggcacagcat tgccgggcgg aagtgttcct taccgattat ggctgggtgg cgatggaccc
     1741 ggccgatgtg cgcaaagtga tgctggagga ggtgaaaggc ggcttgcccc tcaccgatcc
     1801 gcgcgtggat gcggcgcgcc acgctttgtt cggctcctgg gagggcaatt gg
//
LOCUS       DASQCV010000368         1501 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1740859, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000368 DASQCV010000000
VERSION     DASQCV010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1740859"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..887)
                     /locus_tag="VEQ16_05560"
     CDS             complement(<1..887)
                     /locus_tag="VEQ16_05560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HYP63332.1"
                     /translation="MSRASRAAKDRSAFTRRAAIIGAGQALVFGAIGVRLYNLQITNH
                     SKYALLARQNSISERLVAPERGLITDRFGTILAGNQQHWRALFMQAMCPEPDAVLQNF
                     YALVNVSDDEKARVTQDLANRPGYIPVLLKDFLDWQDMAAIEVNTPNLPGVVVEVGAS
                     RIYPLGPVAAHAVGYVARPNRKEASADTVLALPGMRVGRTGVEDVQDGVLRGEPGFVQ
                     TETNVHGALVREVAHDAGTPGQNVALGLDTGLQQLAIQSLGDNTGAVVMLDATNGEIL
                     AMASTPGFDPSLFDKGVPST"
     gene            complement(898..>1501)
                     /gene="mreD"
                     /locus_tag="VEQ16_05565"
     CDS             complement(898..>1501)
                     /gene="mreD"
                     /locus_tag="VEQ16_05565"
                     /inference="COORDINATES: protein motif:HMM:NF016019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HYP63333.1"
                     /translation="DPHSPYQASRRAASRQALAMARLPASRRRHNLWRQLDAASRWAV
                     PSALLVFGLFLLGLPFHVPGQALLRPAYAMGCVYFWSLFRPGSLPLPLTGFIGLLLDL
                     MGITPPGLWALLLIVLQFATQLSRRRLAPRRFLLTWAAFCSFAALASLLAWLLQSGLA
                     LRLLPLWPTGLEILVSAAIYPALAALLVRAHRGPAAVELA"
BASE COUNT          266 a          488 c          544 g          203 t
ORIGIN      
        1 gtggagggca cgcccttgtc gaacaggctg ggatcgaagc ctggtgtgct ggccatggcg
       61 aggatctcgc cattggtggc gtccagcatc accacggcgc cggtattgtc gcccaggctc
      121 tggatggcga gctgctgcag cccggtatcc agccccaacg ccacattctg gcccggcgtg
      181 ccggcatcat gcgccacctc gcgcaccagc gcgccatgca cgttggtttc cgtctgcacg
      241 aagccgggtt cgccgcgcag cacgccgtcc tgcacgtctt ccaccccggt gcgccccacg
      301 cgcatgcccg gcaaggccag caccgtgtcg gctgacgcct ccttgcggtt gggccgggcg
      361 acatagccga ccgcatgcgc cgccaccggc ccgagcggat agatacggct ggcgcccacc
      421 tccaccacca cgccgggcag attgggggtg ttcacctcga tggcggccat atcctgccag
      481 tcgaggaagt ccttcagcag cacgggaata tagccgggcc ggttggcgag gtcctgggtg
      541 acgcgcgcct tctcgtcgtc gctcacattc accagcgcgt agaaattctg cagcaccgcg
      601 tccggctccg ggcacatggc ctgcatgaac aaagcgcgcc aatgctgctg gttgccggcc
      661 aggatggtgc cgaacctgtc cgtgatgagc ccgcgctcgg gcgccaccag acgctcggaa
      721 atggaattct gccgcgccag cagggcgtat ttactgtggt tggtgatctg cagattatag
      781 agccgcacgc cgatggcgcc gaacaccagc gcctggccgg caccgatgat ggcggcgcgg
      841 cgggtgaagg ccgagcggtc cttcgcggcg cggctggcgc ggctcatgcc agctccctca
      901 tgcgagctcc acggcggcgg ggccgcgatg ggcgcgcacc agcagggcgg ccagagccgg
      961 atagatggcg gcggagacga ggatttccag ccccgtcggc cagagcggca ggagcctcag
     1021 cgccagcccc gattgcaaca gccaggcgag cagcgaggcc agggcggcaa agctgcaaaa
     1081 ggctgcccag gtgagcagga agcgccgtgg cgccaggcgg cggcgcgaga gctgggtggc
     1141 gaattgcagc acaatgagca gcagggccca caggcctggc ggggtaatgc ccatgaggtc
     1201 gagcagaagc ccgataaacc cggtgagcgg caaaggcagg gagccggggc ggaagagcga
     1261 ccagaaatag acgcagccca tggcgtaggc gggccgcagc agcgcctggc cgggaacatg
     1321 gaagggcagg ccgagcagga acaggccaaa gaccagcagc gcgctcggca cggcccagcg
     1381 cgacgcggcg tccagctggc gccagagatt atggcgccgg cgtgatgcgg gcaggcgggc
     1441 catggctagc gcttgccgtg atgcggcgcg gcggctggct tgatatgggg aatgggggtc
     1501 a
//
LOCUS       DASQCV010000369         1779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1574856, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000369 DASQCV010000000
VERSION     DASQCV010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1574856"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..146
                     /locus_tag="VEQ16_05570"
     CDS             <1..146
                     /locus_tag="VEQ16_05570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032955 - regulation of division septum
                     assembly [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HYP63334.1"
                     /translation="REEILAVIAKHVSIDPEKVNVKLERGDHVSTLEVNVEMLDLAKV
                     GAE"
     gene            complement(198..776)
                     /locus_tag="VEQ16_05575"
     CDS             complement(198..776)
                     /locus_tag="VEQ16_05575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HYP63335.1"
                     /translation="MLRGLYDKATALAARRDAPLWLLIIAMAEASVFPVPPDILLIPM
                     ALAQPRRAWFFAAITTAGSVLGGALGYLIGYALFAKLAQPIIHFYHYEHAFATFQAGF
                     ARYGALIILVKGLLPIPYKIVTIAAGAAAFNFWAFIGLSIITRGARFFLEGALLRFFG
                     EPARAFIEKRLGMVATSIGVLVVLGFLLLKFA"
     gene            complement(779..>1779)
                     /locus_tag="VEQ16_05580"
     CDS             complement(779..>1779)
                     /locus_tag="VEQ16_05580"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF025002.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HYP63336.1"
                     /translation="SDNDVAAAIGHIEQNNNMPTGGLRQHMNAAGVPFATLLAQLRTE
                     LGWQGVLHQVLGPGLAPTPGDMNAEKTALKAQLGSTKYHLAEIFVPVTDPSDDAQARH
                     FADTVIGQLRSGSPFIIAAAEFSQAQTALSGGDLGYIQLSQMDQAVADTVQGMPVGAI
                     SNPIRVPGGYAIVQLLDKHEIGNQPQTVLSLRQVFAPYPTPITNGQVGPAQAAVITKL
                     AGQVKSLTSCDDMTALNNQYGNVHPADPGPVALATVTPASFQTLLANLPLNKASEPLV
                     QQDGVAVVMICSRGEQAATLPSDDDIANMIVNRRVELESQQLLDVLRHRAVIIQNN"
BASE COUNT          318 a          495 c          659 g          307 t
ORIGIN      
        1 tgcgcgagga aatccttgcg gtcatcgcca agcatgtgtc catcgacccg gagaaggtca
       61 atgtgaagct ggagcgggga gaccatgttt cgacattgga ggtgaatgtc gagatgctgg
      121 atttggcgaa ggtgggggcg gagtaagccc ccctctgccc tacgcatatg ccgggatcct
      181 gatgcccggc agtccgctta cgcgaatttc agcagcaaaa acccgaggac gacgagcacg
      241 ccgatggagg tggcgaccat ccccagccgt ttctcgatga aggcgcgggc cggttcgccg
      301 aagaagcgca ggagcgcgcc ttcgaggaag aagcgggcgc cgcgggtgat gatggacagc
      361 ccgatgaagg cccagaaatt gaaggcggct gcgcctgcgg cgatggtgac gatcttgtac
      421 gggatgggca gcaggccttt gaccaggatg atcaacgcgc catagcgggc gaagccggcc
      481 tggaaggtcg cgaaggcgtg ctcgtaatga taaaaatgga tgatgggctg tgccagcttg
      541 gcaaagagcg cgtagccgat gagatagccg agcgcgccgc cgagcacgct gcccgctgtg
      601 gtgatggcgg cgaaaaacca ggcccggcgc ggctgcgcca gggccatggg gatgagtaat
      661 atatcaggcg gcacggggaa gacgctggcc tccgccatgg cgatgatgag cagccagagc
      721 ggggcgtccc gccgtgcggc cagagcagtg gctttgtcgt aaaggccgcg cagcatggtc
      781 agttattctg aatgatgacg gcgcggtggc gcaggacatc gagcaattgc tgcgattcca
      841 gctccacgcg gcggttgacg atcatgttgg cgatgtcgtc gtcggagggc aaagtggcgg
      901 cctgctcgcc gcgcgagcag atcatcacca cggcgacacc gtcttgctgc accagcggct
      961 cgctcgcctt gttcagcggc aggttggcga gcagggtctg gaagctggct ggggtgacgg
     1021 tggcgagcgc caccgggccg ggatcggcgg ggtggacatt gccgtactgg ttgttcagcg
     1081 ccgtcatatc gtcgcagctg gtgagggatt taacctggcc ggcgagcttg gtgatgaccg
     1141 cggcctgggc cgggccgacc tggccgttgg tgatgggggt ggggtagggc gcgaaaacct
     1201 ggcgcaggga gagcacggtc tgcggctgat tgccgatctc gtgcttgtcg agcaactgca
     1261 cgatggcata gccgccgggg acgcggatgg ggttggaaat ggcgccgacc ggcatgccct
     1321 gcaccgtgtc ggccaccgcc tggtccatct ggctgagctg gatatagccg aggtcgccgc
     1381 cggaaagggc ggtctgcgcc tgggagaatt ccgccgcggc gatgatgaag ggagagcccg
     1441 agcgcagctg cccgatgacc gtgtcggcga aatgccgggc ctgggcgtca tcgctcgggt
     1501 cggtcacggg cacgaaaatt tccgccagat ggtacttggt gctgccgagc tgtgccttca
     1561 gcgcggtctt ttcggcattc atgtcgcccg gcgtgggggc gagacccggc cccagcacct
     1621 ggtgcagcac gccttgccag cccagctcgg tgcgcaattg cgcgagcagg gtggcgaagg
     1681 gcacgcccgc cgcattcatg tgctggcgca gcccgcctgt cggcatgttg ttgttctgtt
     1741 cgatatggcc gatggccgca gcgacgtcat tgtccgaga
//
LOCUS       DASQCV010000370         2508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2900810, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000370 DASQCV010000000
VERSION     DASQCV010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2508
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2900810"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..461
                     /locus_tag="VEQ16_05585"
     CDS             <1..461
                     /locus_tag="VEQ16_05585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63337.1"
                     /translation="LAVHYCANNAVMARAKGMEAVAALPEWEEQIRRNPGNRGRILAQ
                     DPDKFVKTMEHWADSFFPKSDAPVPGLNPDELAAFKFPVVVLRSGYSDLYHTREASEA
                     LVTMIPGSELQEPPWGDQEWNDRMMGGGEPGLFRNWPKLAPQILELAKKI"
     gene            547..1518
                     /locus_tag="VEQ16_05590"
     CDS             547..1518
                     /locus_tag="VEQ16_05590"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HYP63338.1"
                     /translation="MSDIKIRNLRDDLSFGAIVEGVTYETLEDPEVRARLKDLFEERG
                     LIVFEGVEPTSKMHVTVSNVFGPLKDHPTSTTPRVDGDVMPGVIDMHSLPREIGEDKS
                     GLVEMNGKILARFSPWHFDHCYNNELNRAGVLRAVINAPAGEGGRTGFADGIQLYKDF
                     PPALRAKIEKFNAIYTLDTRLTRQRFGRNFKTFGDTDVELKLVQEARTFPRAMHPMVW
                     TRKSGEKVLHVGPWMAVGIEHHEDAEGEALFEEVCQTVNAKAQAYWHDWKPTDLLIWD
                     NWRMLHAVEGCDPKWERRTQRTTIKGDYGLGYFEDGKKIGEVLREIA"
     gene            1640..>2508
                     /locus_tag="VEQ16_05595"
     CDS             1640..>2508
                     /locus_tag="VEQ16_05595"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007435280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYP63339.1"
                     /translation="MAETKDWAGPLAGVRVLDFTRVLAGPAAALALADLGAEVWKLEP
                     PGVGDDTRGFPPFRDGESHYFLSINRGKKSIVVDLKTKEGVALVRDMAAQCDVLIENY
                     RPGVMDRLGLGYETLSAINPRLIYCAISGYGMTGPLRDRPSFDIVLQAMSGVLSVNGE
                     EGRAPTKLGVPLGDLVGGINGPIGILAALYERSVTGKGRLIDVSLMDGMLGMLAYLPQ
                     LAWFTGRNPLPQGAEHPNLVPYGIFPAKDGSIIIACLTNLFWKRICDALEMPELVDDP
                     RFSTIQQRRDNRA"
BASE COUNT          473 a          674 c          890 g          471 t
ORIGIN      
        1 cgctcgccgt gcattattgc gccaacaatg cagtgatggc gcgggcgaag ggcatggagg
       61 ccgtggccgc cctgcctgag tgggaagagc agatccgccg caaccctggg aaccgtggcc
      121 gcatcctggc gcaggacccg gacaagttcg tgaagacgat ggaacactgg gcggacagct
      181 tcttccccaa gagcgacgcg ccggtgccgg ggctcaaccc ggatgagctg gccgcattca
      241 aattccctgt ggtggtgctg cgcagcggtt attccgattt gtaccacacg cgcgaggcca
      301 gcgaggcgct ggtgacgatg atccccggtt ccgagttgca ggagccgccc tggggtgacc
      361 aggaatggaa tgaccgcatg atgggtggcg gcgagccggg cttgttccgt aactggccga
      421 agctggcgcc gcagattctt gagctggcga agaaaattta aggtaaataa caaacagacc
      481 atcccggacg gcgcggatga tgtttccacc attcacgccc ttccaggtgg gagaaaggtg
      541 gaaacaatgt ctgacatcaa aattcgtaat ctgcgggatg atctgagctt cggcgccatc
      601 gtcgagggcg tgacgtacga gacgctggaa gacccggagg tgcgggcgcg gcttaaggat
      661 ttgttcgagg agcgcgggct gatcgtgttc gagggcgtcg agccgacctc gaagatgcat
      721 gtgaccgtca gcaatgtgtt cgggccgctg aaggatcacc ctaccagcac cacgccgcgc
      781 gtggatggcg atgtgatgcc aggtgtgatc gatatgcatt ccctgccgcg cgagattggc
      841 gaggataagt ccgggctggt cgagatgaac ggcaagatcc tggcacgctt ctccccttgg
      901 cattttgacc attgctataa taacgagctc aaccgggcgg gcgtgctgcg cgccgtgatc
      961 aacgcgccgg caggcgaggg cgggcgcacg gggtttgccg atgggattca gctttacaag
     1021 gattttccgc cagcgctgcg ggccaagata gagaagttta acgcgatcta tacgctggat
     1081 acgcgcctga cgcggcagcg tttcgggcgc aatttcaaga catttggcga tacggatgtg
     1141 gagctgaagc tggtgcagga ggcccgcacc ttcccgcgcg ccatgcaccc tatggtgtgg
     1201 acgcgcaaga gcggcgagaa agtgctgcat gtggggccct ggatggcggt gggcatcgag
     1261 catcatgagg atgcggaagg cgaggctttg ttcgaggagg tgtgccagac ggtgaacgcc
     1321 aaggcgcagg cctactggca tgactggaag ccgaccgacc tcttgatctg ggacaactgg
     1381 cgcatgctgc atgcggtaga agggtgcgac ccgaaatggg agcggcgaac ccagcgcacg
     1441 actataaaag gcgattacgg gctcggctat ttcgaggatg gcaagaagat cggggaagtg
     1501 ctgcgcgaga tcgcctgatc tgttgttgac tttggagaac agaccagttg ccgggaggcg
     1561 ctggtctgtt ctgcttttgg gcgcttgccg gggcgattaa tcggggtttt atgggcggga
     1621 ttgcgtttga gggttgagaa tggctgagac aaaggactgg gcgggcccgc tggccggggt
     1681 gcgcgtgctg gatttcaccc gcgtgctggc ggggccggcg gcggcgctgg cgctggcgga
     1741 tctgggtgcc gaggtgtgga agctggagcc gccaggtgtg ggcgacgata cgcgcggctt
     1801 cccgcccttc cgcgatgggg aaagccatta ttttctgagc attaaccgcg gcaagaagag
     1861 cattgtcgtg gacctcaaga ccaaggaggg cgtggcgctg gtgcgcgata tggcggcgca
     1921 gtgcgacgtg ctgatcgaga attaccggcc gggtgtgatg gaccgcctgg ggctgggcta
     1981 tgagacgctt tcggccatca acccgcggct catctattgc gccatttccg gctacggcat
     2041 gaccgggccg ctgcgcgacc ggccctcttt cgacatcgtg ctgcaggcca tgtccggcgt
     2101 gctgagcgtc aatggcgagg aagggcgtgc gccgaccaag ctgggcgtgc cgctcggcga
     2161 cctggtgggc gggattaacg ggcccatcgg cattctggcg gcgctctatg agcgcagtgt
     2221 gacagggaaa gggcggctca tcgatgtgag cctgatggac ggcatgctcg gcatgctggc
     2281 ctatttgccg caactggcct ggttcaccgg ccgcaacccg ctgccgcagg gggcggagca
     2341 tcccaacctg gtgccgtatg ggattttccc ggcgaaggat ggctcgatca tcatcgcctg
     2401 cctgaccaat ctgttctgga agcgcatctg cgacgcgctg gaaatgccgg agctggtgga
     2461 cgatccgcgt ttctccacca tccagcaacg gcgggataac cgcgccga
//
LOCUS       DASQCV010000371         1675 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1243257, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000371 DASQCV010000000
VERSION     DASQCV010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1243257"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..129)
                     /locus_tag="VEQ16_05600"
     CDS             complement(<1..129)
                     /locus_tag="VEQ16_05600"
                     /inference="COORDINATES: protein motif:HMM:NF024240.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP63340.1"
                     /translation="MIDVAIIGGGPAGVAAALQLKARGVEHVAILEREAELGGVPRH"
     gene            complement(122..1483)
                     /locus_tag="VEQ16_05605"
     CDS             complement(122..1483)
                     /locus_tag="VEQ16_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYP63341.1"
                     /translation="MFDVAVVGGGVVGCAVARRFTLEGARTVLLEKGADILSGASKGN
                     SAILHTGFDAPAGSLELRCMQDGYREYLEIRERLGLPLLESGAIVAAWNEAQLTKLPG
                     IVAAAHENGVADVRLIQPDEILAREPHLAPNVLGGVLVPGEYLIDPWSAPLTYLLQAL
                     ENGAEVRRHTELLGGSFDGTWRLETSTGEVQARTVINCAGLYGDVVDERLTGASLFTI
                     KPRKGQFVVFDKAGAKFLRTILLPVPEERTKGIVLTPTIFGNLLVGPTAEEQESRDRA
                     ATDEETLHMLKAKAEEMLPALRHVLVTAIYAGIRPATEQKTYRVQHEPARNYITLGGI
                     RSTGLTAALGLAQHAWALYGGAHQKVAEPVWPQAPRLAEHCPRDWQEPGYGEIICHCE
                     LVTRREIEAALAGPLPAQDWGGLKRRTRAGMGRCQGFYCNASLAALTAGRIAPPLAER
                     PHD"
     gene            1597..>1675
                     /locus_tag="VEQ16_05610"
     CDS             1597..>1675
                     /locus_tag="VEQ16_05610"
                     /inference="COORDINATES: protein motif:HMM:NF024796.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AsnC family transcriptional regulator"
                     /protein_id="HYP63342.1"
                     /translation="MNDTLILDDLDRKILAELQADGRMTN"
BASE COUNT          282 a          582 c          526 g          285 t
ORIGIN      
        1 atggcgcggc acgccgccca gttcggcttc gcgctcgagg atggcgacat gctccacgcc
       61 gcgcgccttc agctgcagcg ccgctgccac gccggccggg ccgccaccaa tgatggcgac
      121 atcaatcatg tggtctctcc gccaatggcg gcgcgattct gccggcagtg agtgctgcta
      181 ggctggcatt gcaatagaaa ccctggcagc gccccatgcc ggcgcgggtg cgccgcttca
      241 gcccgcccca atcctgcgcc ggcaaaggcc cggccagagc ggcctcgatc tcgcggcgcg
      301 tcaccagctc gcaatggcag atgatttcac catagccagg ctcctgccag tcgcgcgggc
      361 aatgctcggc gaggcgcggt gcttgcggcc agaccggctc ggccactttt tgatgcgcgc
      421 cgccataaag cgcccaggca tgctgcgcca ggcccaaagc cgccgtcagc ccggtggagc
      481 gtatgccgcc cagcgtgatg tagttccgcg ccggttcgtg ttgcacgcga taggttttct
      541 gctctgtcgc cgggcggatg ccggcataga tggcggtgac tagcacatgg cgcagggcag
      601 ggagcatctc ctccgccttg gccttcagca tgtgcagcgt ctcttcgtcc gtggcggcgc
      661 ggtcgcggct ctcctgctcc tctgctgtgg ggccgaccag cagattgccg aaaatggtcg
      721 gggtaagcac gatgcccttg gtccgctcct ccggtaccgg gagcaggatg gtgcggagga
      781 atttggcgcc cgccttgtcg aacaccacga actgaccctt gcggggcttg atggtgaaaa
      841 ggctggcgcc ggtcaggcgc tcatccacca catcgccgta aagtccggcg caattgataa
      901 cggtgcgggc ctgaacctcg cccgtgctgg tttccagccg ccacgtgcca tcgaagctgc
      961 cgcccagaag ctcggtatgg cgccgcacct cggcgccatt ttccagcgcc tgcagcagat
     1021 aggtcaaagg tgcgctccac gggtcgatga gatattctcc cggcacgagc acgccgccca
     1081 gcacgtttgg cgccagatgc ggctcgcggg cgaggatttc gtccggctgg atgagccgca
     1141 catccgccac gccattttca tgcgccgccg cgacgatgcc gggcagcttg gtgagctgcg
     1201 cctcgttcca ggccgcgacg atggcgccgc tctccagcag aggcaggccg agccgctccc
     1261 ggatttccag atattcccgg tagccatcct gcatgcagcg cagctccagg ctgccggccg
     1321 gggcgtcgaa gcccgtatgc aggatggcgc tgttgccctt actggcgccg gacaaaatat
     1381 ccgcgccttt ttccagcagc acggtcctgg cgccctccag cgtgaagcgc cgcgccaccg
     1441 cgcagccgac cacgccgcca cccaccactg ccacatcgaa catggcggga agctctaccc
     1501 gcgctgccgc cctgtcaacc gcgccgcccc atagcccaaa tggcggcgcg caattatatt
     1561 gcgcgaaacc atagtccgta gggcagacag aataccgtga acgatacgct catcctcgac
     1621 gatctcgacc gtaaaatcct ggccgaattg caggcggacg ggaggatgac caatg
//
LOCUS       DASQCV010000372         1686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2735157, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000372 DASQCV010000000
VERSION     DASQCV010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2735157"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..834)
                     /locus_tag="VEQ16_05615"
     CDS             complement(<1..834)
                     /locus_tag="VEQ16_05615"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HYP63343.1"
                     /translation="MNQPGFVPLPRGETLLSRETPSRRIGELEVLRTIAVSMVLLEHL
                     SGNLIFWPSHFAEQLQQTGVWTGVDLFFAISGFVIARSLLPKLAEAQDVRSFVRQTVE
                     FWLRRAWRLWPSAWFWLAAPPALCLAFNHSGVYGGFKENWEMAVAGVANLANFREAYV
                     FMRAPPGTAFVQWSLSLEEQFYILLPFAAILLRRRLAYLMGGILVYTFLTSTPYSPLA
                     MFTRGGSVAAGVLLALWSFHQSYQNCAPIFLGRVRLARLAALVGGIALLISLGATQLH
                     VV"
     gene            complement(1106..>1686)
                     /locus_tag="VEQ16_05620"
     CDS             complement(1106..>1686)
                     /locus_tag="VEQ16_05620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HYP63344.1"
                     /translation="LDKEWFAPHLEFRFPKLGEVAVRDIQLELRHALEPWHVLGEEQT
                     TGGTARYVDSSAERLQVKVNGWADERYILACNGAAMPLQRTPAQGEYVAGVRFKAWQP
                     YSALHPTIWAQGPLVFDVYDKWSGRSLGGMTHNVAHPGGRAYDDFPVNSNSAEARRRS
                     RFYPFGHTPGPSPEPQPVPGGEYPRTLDLRRA"
BASE COUNT          348 a          543 c          547 g          248 t
ORIGIN      
        1 cacgacgtgc agctgcgtcg ccccaaggct gatgagcagc gcgatgccgc caaccaaggc
       61 ggccagccgg gccagccgca cccgccccag gaagatgggc gcgcaattct gatagctctg
      121 atggaatgac cagagcgcca gaagcacgcc ggcggcgacc gaacccccgc gggtaaacat
      181 ggccaagggc gagtaaggtg tggaagtgag gaaggtgtag accaaaatcc cgcccataag
      241 gtaggccagc cggcgccgca gcagaatggc cgcgaagggg agcagtatat aaaactgctc
      301 ctccagcgac aggctccatt gcacgaaggc cgtgccgggc ggggcgcgca tgaacacata
      361 ggcctcacgg aaattggcga ggttggcgac accggcgacc gccatctccc aattttcctt
      421 gaacccgcca tagacaccgg aatggttgaa ggccaggcag agcgccgggg gggcggccag
      481 ccagaaccaa gcggagggcc aaagccgcca ggcgcggcgg agccagaatt ctacggtctg
      541 ccggacgaag gatctgacat cttgcgcctc tgccaatttc ggcaggaggg aacgggcgat
      601 cacaaagccg gaaatggcga aaaacaggtc gacgccggtc cagacgccgg tctgctgcag
      661 ctgttcggcg aaatgcgacg gccagaagat cagattgccg ctgagatgct ccaacagcac
      721 catggaaacg gctatcgtcc tcagcacttc cagttcaccg atgcgccggg acggtgtctc
      781 gcgcgacagc aaggtttcac cgcgcggcag cgggacaaaa ccaggctgat tcatgcgccg
      841 cgcgccaaag gcgcggcaga ctcgcggcgt tccgtcaggt ggaccatatt tgcgctctac
      901 aaccggcgcg ctgcaaatgc cacaccggcc ttaaggcttc ctcatatcct ccggcagggc
      961 tgccgccccg tttttgcccc ggtgcgatgt tttcagcagc aaagccgcca tctgcacctc
     1021 attttcggcc atctcacggc ggagtgcggc cagttccgcc agcgcatcac cccgcaggag
     1081 gcggaggagc cagcgaacca gcctctcagg cacgccgcag atcgagcgtg cgcggatatt
     1141 cgccgcctgg cacgggctgc ggctctggcg acgggcccgg cgtatggcca aacgggtaga
     1201 agcgcgaacg gcggcgggct tcggcggagt tggaattgac cgggaaatca tcataggccc
     1261 gcccgccggg atgggcgacg ttatgcgtca tgccaccgag cgagcggccg gaccatttgt
     1321 catacacgtc gaacaccaaa ggcccctgcg cccagatggt gggatgcagc gcggaataag
     1381 gctgccaggc cttgaaacgc acgccggcca cgtactcgcc ctgggccggc gtgcgctgca
     1441 gcggcatggc ggcgccgttg caggccagga tatagcgctc atccgcccag ccattcacct
     1501 tcacctgcag gcgctcggcg gagctgtcga catagcgcgc cgtgccgccg gtggtttgtt
     1561 cctcgcccag cacatgccag ggctccagcg catggcgcaa ttcgagctgg atgtcgcgca
     1621 ccgccacttc gccaagtttg gggaatcgga attccagatg cggggcgaac cattccttgt
     1681 ccagcg
//
LOCUS       DASQCV010000373         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_912715, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000373 DASQCV010000000
VERSION     DASQCV010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_912715"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..275)
                     /locus_tag="VEQ16_05625"
     CDS             complement(<1..275)
                     /locus_tag="VEQ16_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007436070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP63345.1"
                     /translation="MTLSLRIEKACRTLGGRAVLRGIDLALAEGQCLVLAGESGSGKT
                     TLLRLIAGLDRADAGRIEIKGAMMDDAARIFVPAERRGLGMVFQDFAL"
     gene            complement(272..1813)
                     /locus_tag="VEQ16_05630"
     CDS             complement(272..1813)
                     /locus_tag="VEQ16_05630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYP63346.1"
                     /translation="MRLARILALALLAALFVYPLARLLALPLLQGSDVGPCLPALANS
                     AFFALLVGCIAAPLGAILAQALETLDGAVLRLLGLGLWLLFLTPGYVLTTGWLVIMSH
                     PAIRDGLFGQVFLGPTGLVFLYLMKSLPFAVFVARATFAAAGAQLGEAALVLGLTRWR
                     RWLLRLRLALPAMAAAFTIAAIETMQEFGIPATLGLTAKIPILTYAIYQRLNTTPTDF
                     AGAAALCWWLIGSAAVLALLQAAVQRRHQAALVHGRARQAMRAKPAALARMSLAGVAS
                     LLWGLGLGAPLLALIIVALGGPMDADGLDAVPRSLFYGMLAATLALGTGAFVLKLQQG
                     RSLWFTGAVQGLLAANMAVPGLILGAGYVIAFNNDLLPLYGTVLLLIIAYAAGALPIA
                     IRLLGTALGQLDAKLDEAARIFALPRVTRLIDIEAALLARPGLQAWLLVVAAVMFELP
                     ISELLYVPGAMPLGVAIVSADMMASYAVAARLALLGLATLAGLALLLNGALRLSAAPR
                     PRQVS"
     gene            complement(1810..>2038)
                     /locus_tag="VEQ16_05635"
     CDS             complement(1810..>2038)
                     /locus_tag="VEQ16_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="iron ABC transporter substrate-binding protein"
                     /protein_id="HYP63347.1"
                     /translation="AERFMAFIMRPDIQKLRQAQGEADGYYWPVTSDAPVPLPGLPDL
                     ATLKIVTLDPVAWGRLESTINGWFAKVMSGA"
BASE COUNT          403 a          714 c          668 g          253 t
ORIGIN      
        1 agggcaaaat cctggaacac catgccgagc ccgcggcgct cggcgggcac gaaaatgcgg
       61 gcggcatcat ccatcattgc gccttttatc tcgatgcgcc cggcatcggc gcggtcgagc
      121 ccggcgatca ggcgcagcaa ggttgtcttg ccggagccgg attcacccgc caggacgagg
      181 cattgtccct ccgccagcgc gagatcgatg ccgcgcagca cggcacggcc gccgagcgtc
      241 cggcatgctt tctcgatgcg caggctcagc gtcatgaaac ctgcctcggc cgtggcgcgg
      301 cgctgaggcg cagggcgccg ttcagcagca gcgccagtcc ggccagcgtg gccagcccca
      361 gcaaagcgag ccgcgccgcc accgcgtagg acgccatcat gtcggcggag acgatggcaa
      421 cacccagcgg catcgcccca ggcacgtaga gcagttcgga gatcggcagc tcgaacatca
      481 ccgcagccac caccagcagc caggcctgca gtcccggccg ggcgagcaaa gcggcctcga
      541 tatcgatgag gcgggtgacg cgaggcaggg caaaaatgcg cgccgcctca tccagcttgg
      601 cgtcgagctg gccaagggcg gtgccgagca gccttatggc gatgggcagg gcaccagccg
      661 cataggcgat gatgagcagc agcaccgtgc cgtagagggg aagcaggtcg ttattgaagg
      721 cgatgacata gcccgcgccc aatatgagcc ccggcacggc catgttggcg gccagcagcc
      781 cctgcacggc gccggtgaac cagagcgagc ggccctgctg cagcttcagg acgaacgcgc
      841 ccgtccccag tgccaatgtc gccgccagca tgccgtagaa cagcgagcgc ggcaccgcgt
      901 ccagcccgtc agcatccatg ggcccgccca gcgccacgat gataagcgcc agcagcggcg
      961 cccccagccc caacccccag agcagcgagg ctactcccgc cagcgacata cgcgccagag
     1021 ccgctggctt tgcgcgcatt gcctgccgcg cccgcccatg caccagcgcg gcttggtggc
     1081 gcctttgcac cgcggcctgc agcaaggcca gcacggcagc actgccgata agccaccagc
     1141 acaaggcggc tgccccggcg aaatcagtgg gggtggtgtt gaggcgctga tagatggcgt
     1201 aggtgagaat gggaattttc gccgtcagcc cgagtgtcgc gggaatgccg aattcctgca
     1261 tcgtctcaat ggcggcgatg gtgaaggcgg ccgccatggc cggcagcgcc aggcgcagcc
     1321 gcaaaagcca gcgccgccag cgcgtaagcc ccagcaccag ggctgcctcg cccagctgcg
     1381 cgccggcggc ggcgaatgta gcgcgtgcta caaacacggc gaagggcagg gatttcatca
     1441 gatacaggaa caccagccca gtcggcccga gaaaaacctg cccgaacagc ccgtcccgga
     1501 tggcgggatg gctcatgatg acgagccagc cagtggtgag cacatagccc ggcgtgagga
     1561 acagcagcca caaccccaga cccagcaggc gcagcaccgc cccgtccagc gtctccagcg
     1621 cctgtgccag aatggcccct agaggtgccg cgatgcagcc caccagcagc gcgaaaaagg
     1681 cggaattggc cagcgccggc aggcagggcc cgacatcgct gccctgcagc agcggcagcg
     1741 ccagcagcct ggccaaagga tagacgaaca gcgccgcgag cagcgccaga gccaggatgc
     1801 gcgccagcct catgccccgc tcatcacctt ggcgaaccag ccattgatgg tgctttccag
     1861 ccttccccag gccacggggt cgagcgtcac gattttcagc gtggcgagat ccggcaggcc
     1921 aggcagcggc accggggcat cgctcgtgac gggccaataa tacccatccg cctcgccctg
     1981 cgcctggcgc agcttctgga tgtccggccg catgatgaat gccatgaaac gttccgcc
//
LOCUS       DASQCV010000374         1854 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1742798, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000374 DASQCV010000000
VERSION     DASQCV010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1742798"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..974
                     /gene="kdpA"
                     /locus_tag="VEQ16_05640"
     CDS             <1..974
                     /gene="kdpA"
                     /locus_tag="VEQ16_05640"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011930762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HYP63348.1"
                     /translation="HPFENPNAWTNLLENWLLLVIGFALPISFGYMVKDKPQGRALMA
                     AMAVILVLGCIGAYAAEAAGNPLHIAAGVQASGNWEGKEMRFGIPASTTFNVSATGTS
                     TGAVDSFTDSYTPLAGAVPMFLMQLGEIAPGGVGSGFYTIIVFALLSVFVAGLMVGRT
                     PEYLGKKVQAKEIKLAMLGVLILTVFILCGAGFSLVTASGLGSLANGGPHGLSEMLYA
                     WTSATENNGSAFAGISANTPLLDYGLGTAMLFGRFAFMVPILAIAGSLAAKPKLPESA
                     GTFPTHGPLFVGLLVGVIIILGGLQFMPADTLGPLAEHFVLHAGKTF"
     gene            976..>1854
                     /locus_tag="VEQ16_05645"
     CDS             976..>1854
                     /locus_tag="VEQ16_05645"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941713.1"
                     /note="One of the components of the high-affinity
                     ATP-driven potassium transport (or KDP) system, which
                     catalyzes the hydrolysis of ATP coupled with the exchange
                     of hydrogen and potassium ions; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit B"
                     /protein_id="HYP63349.1"
                     /translation="MSKAETISLFDAGIIRRAALDSFTKLNPVTLARNPVIFVTEIVA
                     ALVTTTGIEAILTHHHPAFSLTIAVWLWLTVIFATFAEAVAEGRGRARAESLRRARSD
                     TMAKLLVNPHDRAIFKPTPAPSLRRGDVVLVEAGDLMPSDGEVIEGVASVNESAVTGE
                     SAPVVREAGGDRSAVTGGTLVVSDWLVVQITADAGATFLDRMISLVEGAERRKTPNEI
                     ALNILLAGLTIVFLIAVVTLVGFGQYSGTQFSIPVLAALLVCLIPTTIGGLLSAIGIA
                     GMDRLIRHNVIPMSGRA"
BASE COUNT          284 a          666 c          540 g          364 t
ORIGIN      
        1 cgcatccctt cgaaaacccc aacgcctgga ccaacctttt ggaaaactgg ctgctcctgg
       61 tcatcggttt cgctttgccc atctccttcg gctacatggt gaaggacaag ccgcagggcc
      121 gcgccttgat ggccgccatg gccgttattc tggtgctcgg ctgcatcggc gcctatgcgg
      181 cggaagcggc gggcaacccg ctgcacatcg ccgccggcgt gcaggccagc ggcaactggg
      241 aaggcaagga gatgcgcttc ggcattcccg ccagcaccac cttcaatgtc tccgccaccg
      301 gcacctccac cggcgccgtc gacagcttta ccgacagcta taccccgctt gccggtgctg
      361 tcccgatgtt cctgatgcag cttggcgaga tcgcgcccgg cggtgtcggc tccggcttct
      421 acaccatcat cgtcttcgct ctgctctcgg tcttcgtcgc gggcctcatg gtgggacgca
      481 cgccggaata tctcggcaag aaggtgcagg ccaaggagat aaaactcgcc atgctcggcg
      541 tgcttatcct cacggtcttc atcctctgcg gcgccgggtt ctctctcgtc acggcctcgg
      601 gccttggttc gctcgccaat ggcggtccgc atgggctgtc cgagatgctc tatgcctgga
      661 cctcggccac ggagaataac ggctcggcct ttgcgggcat ctccgccaac acgccgttgc
      721 tcgattatgg cctgggcacc gccatgctgt tcggccgttt cgccttcatg gtgcccatcc
      781 tcgccattgc tggctcgctc gcggccaagc cgaagctgcc ggaaagcgcc ggcaccttcc
      841 ccacgcacgg cccgctcttc gtcggcctgc tcgtcggcgt gatcatcatc cttggcggcc
      901 tgcaattcat gcccgccgac acgctgggcc cgctcgccga acattttgtc cttcacgctg
      961 gaaagacctt ctaagatgtc aaaggctgaa accatatcgc tgttcgatgc cggcatcatc
     1021 cgccgcgccg cgctggattc attcacgaaa ctgaatcccg tcacgctggc gcgcaacccg
     1081 gtcatcttcg tcacggaaat cgttgccgcc ctggtcacca ccacgggcat cgaggcgatc
     1141 ctcacccacc accatcctgc cttctcgctc accattgccg tgtggctctg gctcacggtc
     1201 atcttcgcca ccttcgccga agcggtggcg gagggccgcg gccgcgcgcg tgcggagtcc
     1261 ctgcgccgcg cccggtccga cacgatggcg aagctgctcg tcaacccgca tgaccgcgcc
     1321 atcttcaaac ccaccccggc gccgagcctg aggcgcggcg atgttgtgct ggtcgaggcg
     1381 ggcgatctga tgccctccga cggtgaagtc atcgaaggtg tcgccagcgt gaatgaaagc
     1441 gcggtgacgg gtgaatccgc ccccgtggtg cgcgaggccg gcggcgaccg ttccgccgtc
     1501 accggcggca ctttggtcgt gtcggactgg ctggtggtgc aaatcaccgc cgatgccggc
     1561 gccaccttcc tcgaccgcat gatctcgctg gtggaagggg ccgagcgccg caagacgccg
     1621 aatgagatcg cgctgaacat cctgctcgcc ggcctcacca tcgtcttcct catcgccgtc
     1681 gtcaccttgg tcgggttcgg ccaatattcc ggcacgcaat tttccatccc cgtactggcg
     1741 gccctgctcg tctgcctcat ccccaccacc atcggcgggc tgctctcggc catcggcatc
     1801 gccggcatgg acaggctgat ccgccacaac gtcatcccga tgagcgggcg agcg
//
LOCUS       DASQCV010000375         1851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_83964, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000375 DASQCV010000000
VERSION     DASQCV010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83964"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..387
                     /locus_tag="VEQ16_05650"
     CDS             <1..387
                     /locus_tag="VEQ16_05650"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobN"
                     /protein_id="HYP63350.1"
                     /translation="LYHLDSTNPTQPRARLLQEEIARVVRARAANPAWIKSMMAHGFR
                     GGAELAATLDHMAAFANLADTVPAHLFDLYFAATLGQDDVKAFLATQNPAALARMHDV
                     FRRLAESGLWRTRNNEITAALEEMRP"
     gene            384..1526
                     /gene="cobG"
                     /locus_tag="VEQ16_05655"
     CDS             384..1526
                     /gene="cobG"
                     /locus_tag="VEQ16_05655"
                     /EC_number="1.14.13.83"
                     /inference="COORDINATES: protein motif:HMM:TIGR02435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016709 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen, NAD(P)H as one donor, and incorporation
                     of one atom of oxygen [Evidence IEA];
                     GO_process: GO:0019250 - aerobic cobalamin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B synthase"
                     /protein_id="HYP63351.1"
                     /translation="MSAPIRGWCPGAHRPMQAADGLLLRIRPPLGRLTAAQARGLAAL
                     ARAHRQERLTLTSRANLQWRGVAPEAMPALLDGLAALGLLDDDVTQERARNIVITPFL
                     QEGAGTRALAQCLTSALPDFPDLPEKFGFAIDTGPQPVLSGVSADIRLERSVDGSLLV
                     RADGAAHGQIVTESDAVACIHNLVCWFLESGGAPDKRGRMRNHLAAGHQPPISGENAA
                     PSMPAPPPEPGRHEAGTLAAFAFGEIPAACLAQFADLAGEIRLTPWRMLLLPGLSSLP
                     DMEGPIFDPASPSLRVFACTGAPGCASAHGETRGLAQALAPYLPDGATLHVSGCGKYC
                     AHPTPASFTLTAAEAGFSLAQDGIPTRTGLDPDALLRHPSQIFGRS"
     gene            1526..>1851
                     /locus_tag="VEQ16_05660"
     CDS             1526..>1851
                     /locus_tag="VEQ16_05660"
                     /EC_number="5.4.99.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016993 - precorrin-8X methylmutase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-8X methylmutase"
                     /protein_id="HYP63352.1"
                     /translation="MPYTYETDGAAIYRQSFATIRAEAALDGFSPEEEPVVVRMIHAL
                     GLVGLERHVCFSPGMVTAARAALASGAPILCDARMVSEGITRPRLPAQNEVICTLHDP
                     SVPALAA"
BASE COUNT          286 a          708 c          558 g          299 t
ORIGIN      
        1 ctgtaccatc tcgattccac caaccccacc cagccccgcg cccgtctgct gcaagaggaa
       61 atcgcgcgcg tcgtccgcgc ccgcgccgcc aatccggcct ggataaaaag catgatggcg
      121 cacggcttcc gcggcggcgc cgaactcgcg gcgacactcg accacatggc cgccttcgcc
      181 aatctcgcgg ataccgtgcc ggcgcatctg ttcgatctct attttgccgc gaccctcggc
      241 caggatgacg tgaaagcctt tctcgcaacg cagaatcccg ccgccctggc gcgcatgcac
      301 gacgtcttcc gccgccttgc tgaatccggg ctgtggcgga cccggaacaa tgaaatcacg
      361 gcagcgcttg aggagatgcg gccatgagcg cccccatccg cggctggtgc cccggcgcgc
      421 atcgcccgat gcaggcggcg gatggtttgt tgctccgcat caggccgccg ctcgggcgcc
      481 tcaccgccgc gcaggcacgg ggcctagcgg cactggcgcg cgcccatcgg caggagcgcc
      541 ttaccctcac ctcccgtgcc aatttgcaat ggcgcggcgt ggcgcctgaa gccatgcccg
      601 ccttgctgga cggtctggca gcgctgggtc tgctggatga cgatgtaacg caggagcggg
      661 cacgcaacat cgtcatcacg ccattcctgc aggagggcgc tggcacgcgc gcgctggccc
      721 aatgtctcac cagcgccttg ccagacttcc cggacctgcc tgagaaattc ggcttcgcca
      781 tcgatactgg gccacaaccg gtgctgtccg gcgtgtccgc cgacatcagg ctggagcgca
      841 gcgtggatgg aagcctgctg gtgcgcgccg atggcgccgc ccatggccag atcgtcacgg
      901 aatctgacgc cgtcgcctgc atccacaacc tcgtctgctg gtttctcgaa agcggcggcg
      961 cgccggacaa gcgtggccgg atgcgcaacc acctggccgc cgggcaccag ccgcccatct
     1021 caggcgaaaa cgccgcccct tccatgcccg cgccgccccc cgagccagga cgtcatgaag
     1081 ccggcacact cgccgccttt gccttcggcg agatcccagc cgcctgcctg gcgcaattcg
     1141 cggaccttgc cggggaaatc cgcctcaccc cctggcgcat gctgctattg cctggccttt
     1201 ccagtctgcc agacatggag ggccccatct tcgaccccgc cagccccagt ttacgcgtct
     1261 tcgcctgcac cggcgcgccc ggctgcgcca gcgcccatgg cgaaacgcgg ggtttggccc
     1321 aggccctggc gccttacctg ccggacggcg ccaccctcca cgtctccggc tgcggcaaat
     1381 attgcgccca tccaaccccc gccagcttca ccctcaccgc cgctgaggcc ggcttcagcc
     1441 tcgcccagga cggcatcccc acccgcacag ggcttgaccc ggacgctctg ctccgccacc
     1501 ccagccagat attcggacgg agctgatgcc ctacacctac gagactgacg gtgccgcgat
     1561 ctaccgccaa tccttcgcca ccatccgcgc ggaagccgcc ctggacggat tctctccgga
     1621 ggaagagccg gtggtggtgc gcatgatcca cgctttgggg ctggtcgggc tggagcgcca
     1681 tgtgtgtttc agccccggca tggtcacggc agcgcgcgcg gctttggctt cgggggcacc
     1741 catcctgtgc gatgcccgca tggtgagcga gggcatcacc cgcccgcgcc tgcccgccca
     1801 aaacgaggtg atctgtacat tgcacgaccc ttcggtgccc gccctggcgg c
//
LOCUS       DASQCV010000376         1716 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_580930, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000376 DASQCV010000000
VERSION     DASQCV010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1716
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580930"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            37..1247
                     /locus_tag="VEQ16_05665"
                     /pseudo
     CDS             37..1247
                     /locus_tag="VEQ16_05665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612306.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS91 family transposase"
BASE COUNT          330 a          604 c          455 g          327 t
ORIGIN      
        1 gagaccgatc agccgccggc gtaaccgccc gcggcaatgt tacggccgaa gctggaggtc
       61 gcggatatca tcacggggcg gcatggcgtg ctgccaatgc cgggcacgtc agcctcgacc
      121 agttgaaggt gatgacggcc atcgagcgct gccgcacagc ggcgctcggc ggccatgtcg
      181 agcgctgcga gaagtgtgct catacggtca tcgcctataa ttcctgccgt aaccggcact
      241 gccccaagtg tcagggcgcc gccgcgcagg aatggctgcg cgagcgcgag gcggagcttt
      301 tgccggtgcc gtatttccac gtggtgttca cgctgcccgc tgccatcgcc gacatcgcct
      361 atcagaataa ggcggtaatc tacgatctgc tgttcaaggc gtcatcccag accatgctca
      421 ccattgccgc cgatcccaag catctcggcg cgcgcatcgg catcttgtcc gtcctgcaca
      481 cctggggctc ggcactgacc caccacccgc atgtacacat gatcgtgccc ggtggcggct
      541 tctcgctcga tggcagcaaa tggatctcgt gccggccgct cttcttgctg tcagtgaacg
      601 tgctgtcagc tctgttccgc gggttgttcc tggacaagct ccacgccgct tatcgggcgg
      661 gtgcgctggc gttcttcggc aagcatgccc cactgatcga tccccgagca ttcgccgcct
      721 atctggcgcc gctgtggagc acagagtggg tggtctactg caagcatccc ttcggcgggc
      781 ctgaggaagt tttgcgctat ctcgcgcgct acactcaccg cgtcgccatc tcaaatcgcc
      841 gcctgatcgc aggcgatcag aaaggcgtta ccttcaagtg gaaggactac aggctcgaag
      901 gtccagaccg ctacaaggtg atgacgctcg ccacccacga gttcatccgc cgctttctca
      961 tgcacgtgct gcccgcgggc ttccaccgca tccgctacta tgggctgctc gccagcggcc
     1021 agcgcgccga gaatatcgct cgcgcccgca aactgctggc acctccgatc attcccctcg
     1081 atgccatcaa agcaatgggc gccaatgctg ccgagccgga aaaaccagag cgttcgtacc
     1141 cctgctgcgg cggacgcatg atcatcatcg aaaggttcga acggggcgca actccgcact
     1201 accaaccgaa cccgccaacg ccagcgatca ggatcgacac ctcatgatct catcgccgcc
     1261 gatcaaccaa cactgccaaa cttattcttg ccggcgcgcc gcccgccgca cccaagctcc
     1321 cattcatcct tgcaatttgc agacaactgc agtcgcaaac acctcgcgca acctacagcg
     1381 cgttcatttg caccgatcgg ctcatcattc cagcaccgca aaaatatctc tccacccgtc
     1441 ccggcctcac ctcgttagca ccgccagcgt gcccaaatct ccatagcctt tttgccgcgc
     1501 catcctcccg cggcactgaa ggcccactac ctcccgacgc gatttcgtgc cttgacgctt
     1561 ttcggacgcc ggccatcgga ccttgtggtg agatcagtgc tgccggcgtc cgaaaacctg
     1621 cacaaaagtt agcattaccg catcgcaaca ttgcatccgc ttcaccccag tgagcagaca
     1681 tacgcgagcg aagccattcg gccattcgcg actcca
//
LOCUS       DASQCV010000377         8172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1743386, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000377 DASQCV010000000
VERSION     DASQCV010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 8172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8172
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1743386"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..540)
                     /locus_tag="VEQ16_05670"
     CDS             complement(<1..540)
                     /locus_tag="VEQ16_05670"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019459590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HYP63353.1"
                     /translation="MSFSFDLLAKDGAARAGLLHTAHGDVPTPTFMAVGTAGTVKAMT
                     ADAVRATGAKIVLGNTYHLMLRPGPERVARLGGLHKMMDWPGPILTDSGGFQVMSLAK
                     LRKLDESGVTFRSHIDGAAYHLTPERSTEIQYQLDSTITMVLDECTKFPATHAEAAES
                     MRLSTRWAKRSRDAFIPREG"
     gene            complement(537..1562)
                     /gene="queA"
                     /locus_tag="VEQ16_05675"
     CDS             complement(537..1562)
                     /gene="queA"
                     /locus_tag="VEQ16_05675"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HYP63354.1"
                     /translation="MNLSDFDYDLPAERIAVSPARPRDSARLLHVGAAGLADYVVRDL
                     PGLLRPGDLLVVNDTKVIPAQLTAMRGAARIGITLDRRLDDGSWRVLLRNAKRVHEGD
                     VLVIDPEFSAEVLEVLEGGGALLRFVADDFYAALARSGALALPPYIARPEGITERDKS
                     DYQTMFAAHEGAVAAPTAGLHFTPELLVALRARGVEIVRVTLHVGAGTFLPVRVEDVT
                     QHVMHAERGFVSAEVAVKINAVRQAGGRIVPVGTTALRLIESAADDDGVVHEFNGETD
                     IFILPGYRFKVADLLFTNFHLPKSTLLMLVSAFAGMERIRAAYEHAIGAEYRFYSYGD
                     ACLLERA"
     gene            complement(1647..2042)
                     /locus_tag="VEQ16_05680"
     CDS             complement(1647..2042)
                     /locus_tag="VEQ16_05680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYP63355.1"
                     /translation="MKFTVDRIDHVVMTCRDLQVTAGWYQRVLGMEREEYGGKNRTAL
                     RFGAQKINLHEVGSEVIPHAHETKPGTLDLCFVVAVGPEDVIAQLHACGVSIERGPVA
                     RIGALGEIMSVYCRDPDGNLIELASYLGA"
     gene            complement(2049..3695)
                     /locus_tag="VEQ16_05685"
     CDS             complement(2049..3695)
                     /locus_tag="VEQ16_05685"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HYP63356.1"
                     /translation="MNATSKRSPGFTYSPMFPLGEDTTTYRKLDIDGVSSIEIDGKNV
                     LKVSADALSALAFEAFHDVSHLLRPAHLAQLANILKDSEASENDRYVAMEFLKNAVIA
                     AKGVLPMCQDTGTALVFGKKGQRVWVEGDEEEAFSWGVSRTYTETNLRYSQMAPLTMF
                     DEKNTGNNLPVQFDIMAAPGEHHADEFHLQFIAKGGGSANKTYLFQETRATLTPEKIY
                     SFLEQKIKTLGTSACPPYHLCIVIGGTSAELNLKTVKLGSTKYLDHLPTEGSATGHAF
                     RDVEMEQKVLEITRKIGIGAQFGGKYFCHDVRVIRLPRHGASLPIGLGVSCSADRQIK
                     AKITKDGVFLEQLETEPAKYLPEITDEHLGGDVVAIDLNQPMADILAKLSAYPIKTRV
                     ALTGTIVVARDIAHAKLKERLDAGQGLPDYIKNHPVYYAGPAKTPEGLPTGSFGPTTA
                     GRMDSYVEEFQKAGGSLVMLAKGNRSKAVREACHKYGGFYLGSIGGPAAVLAQNNITK
                     VEVLEYPELGMEAVWKIEVKDFPAFIVVDDKGNDFFADLA"
     gene            complement(3700..4206)
                     /locus_tag="VEQ16_05690"
     CDS             complement(3700..4206)
                     /locus_tag="VEQ16_05690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor
                     SspB"
                     /protein_id="HYP63357.1"
                     /translation="MAEDDLNVPESLLPYDEWTQDALRQVVVSALRHVAAHGLPGGHH
                     FYLTFKTAYPGVQIPDRLRTQYPDEMTIVLQHQFHGLTLDEENKILSVGLSFSGIPAT
                     LIIPTAAITSFADPEVRFGLQFEVTLPETVKAADVPAPEGDDPPSRPTDGPADVVSLD
                     AFRKRQKD"
     gene            complement(4249..5085)
                     /locus_tag="VEQ16_05695"
     CDS             complement(4249..5085)
                     /locus_tag="VEQ16_05695"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acyltransferase"
                     /protein_id="HYP63358.1"
                     /translation="MNQNLIPELPRFTVGNAAPGFTELRASNLGVRLAVNRDELDAVQ
                     ALRYQVFYEEMGAKADAQTLATRRDRDEFDEIADHLLVVDHDLGEGASSVVGTYRLIR
                     EEAALRHGRFYSESEYDISALKNFAGNKLELGRSCTASAYRNRAVMQLLWRGIAAYVF
                     HYGIDLMFGCASLAGTDPDALAGELTYLATHHMAPAAIRPRALPDRYVEMRREATGPT
                     DPKRAMLRLPPLIKGYLRLGGFVGEGAVIDEQFNTTDISIVVQTDLVTDKYYRHYERE
                     AR"
     gene            complement(5082..5492)
                     /locus_tag="VEQ16_05700"
     CDS             complement(5082..5492)
                     /locus_tag="VEQ16_05700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HYP63359.1"
                     /translation="MDISIERLCIENGLKMTGPRRVIARVLSEATDHPDVDELHRRAN
                     RVDPGISLATVYRTVRLLESKGILSRRDLGSRRARYEPSADKHHFHLVDQETGTVVEF
                     SAPQAESMLQDIAKAQGFDVEVIKIELYGRRTGQ"
     gene            5544..5798
                     /locus_tag="VEQ16_05705"
     CDS             5544..5798
                     /locus_tag="VEQ16_05705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019461373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HYP63360.1"
                     /translation="MIMSQIALPVHDKAIDITAETCPMTYVRTRLALDTMDTGQILLV
                     RLKGEDPLRNVPRAAADQGHDLLELLEQTDGTWILVIQKG"
     gene            complement(5817..7025)
                     /gene="odhB"
                     /locus_tag="VEQ16_05710"
     CDS             complement(5817..7025)
                     /gene="odhB"
                     /locus_tag="VEQ16_05710"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019089699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HYP63361.1"
                     /translation="MATDIKVPTLGESVTSATIARWIKKVGEAVLADEPLVELETDKV
                     TMEVGAPEAGVLAEIIAPEGAEVEVGGLLGRVEAGAGAAPAAPAPIPPVMTGVHAPQA
                     APGPVARPGAGALPAAARLMEDKGISGESITGTAKDGRISKGDVLEFLNKPAVQQAPP
                     LVKPARTPDVREERVKMTRLRKTIASRLKDAQNTAAMLTTFNEVDMSAIMGLRSEYKE
                     AFEKKHQGIRLGFNGFFVKAVCAALQEFPAVNAEIDGDDIVYKHFVHMGIAVGGANGL
                     VVPVIRDADQKSIAQIESEIAGFAKAAKDGTLKLEQLSGGTFSITNGGVYGSLMSTPI
                     LNPPQSAILGMHKIQERPVVINGQIVARPMMYLAVSYDHRIIDGREAVSFLVRVKESL
                     EDPRRLLLEI"
     gene            complement(7133..>8172)
                     /gene="sucA"
                     /locus_tag="VEQ16_05715"
     CDS             complement(7133..>8172)
                     /gene="sucA"
                     /locus_tag="VEQ16_05715"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019085228.1"
                     /note="SucA; E1 component of the oxoglutarate
                     dehydrogenase complex which catalyzes the formation of
                     succinyl-CoA from 2-oxoglutarate; SucA catalyzes the
                     reaction of 2-oxoglutarate with dihydrolipoamide
                     succinyltransferase-lipoate to form dihydrolipoamide
                     succinyltransferase-succinyldihydrolipoate and carbon
                     dioxide; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HYP63362.1"
                     /translation="WATAEALAYGTLLLDGQRVRLSGEDCQRGTFSQRHAVLIDQTNQ
                     NEFTPLNNIRAGQAPIEIFNSLLSEAGVLGFEYGYTLADPNVLVLWEGQFGDFANGAQ
                     VIIDQFIASGETKWLRMSGLVMLLPHGHEGQGPEHSSARLERYLQLCAEHNMNVCNIS
                     TPANYFHALRRQLKRNFRKPLVLMTPKSLLRHKLCVSQLSEMAEGSSYKFVYPEVDEL
                     LPPDHIRRVVLCSGKVYYDLLAERRERGINDVAIVRLEQFYPFPVRALKAVLEPYVGA
                     EVVWCQEEPENMGAWNFLDRKLEHVLGLIGNLAKRPVYVGRPAAASPATGLAKVHAAE
                     QAALVDQALSA"
BASE COUNT         1561 a         2598 c         2492 g         1521 t
ORIGIN      
        1 gccctcacgc gggatgaaag cgtcgcgcga gcgtttcgcc cagcgcgtgg acagccgcat
       61 ggactccgcc gcctccgcat gggtagcggg aaatttggtg cattcatcga gcaccatggt
      121 gatggtggaa tccagctgat actggatttc cgtcgagcgc tcgggcgtga gatgataggc
      181 ggcaccatcg atatgagacc ggaacgtcac cccgctctca tccagcttgc gcaatttcgc
      241 cagcgacatc acctggaaac cgccggaatc ggtgaggatc ggcccaggcc agtccatcat
      301 cttatgcaac ccgccgaggc gggcgacgcg ctccgggccg ggacgcagca tcagatggta
      361 ggtattgccc agcacgattt tcgcacccgt ggcccgcacc gcgtcggcgg tcatcgcctt
      421 caccgtgccg gccgtgccga cagccatgaa agttggggtc ggcacgtcgc catgcgccgt
      481 gtgcagcagc ccggcccgcg cggcgccgtc cttggccaga aggtcaaacg agaaactcat
      541 gcgcgctcca gcaagcaggc atcgccatag gaatagaaac gatattccgc gccaatagca
      601 tgttcatagg cggcgcggat acgctccatg ccggcaaaag cggataccag catcagcaaa
      661 gtcgatttcg gcagatggaa attggtgaag agcaggtcag ccaccttgaa gcgatagccg
      721 ggcaggatga aaatatccgt ctcgccgttg aattcatgca cgacgccatc atcatccgcg
      781 gcactctcga taagccgcag cgccgtcgtg cccaccggca cgatgcgccc gccagcctgg
      841 cgcaccgcgt tgatcttcac cgccacctcg gccgagacaa agccgcgctc cgcatgcatc
      901 acatgctgcg tcacatcctc cacccgtaca ggcagaaacg tgccggcgcc gacatgcaat
      961 gtcacccgca caatctccac gccacgcgcc cgcagggcca ccagcaattc gggcgtaaaa
     1021 tgcagccccg ccgtaggggc ggccaccgcg ccttcatgcg ccgcgaacat ggtctggtag
     1081 tcggatttgt cacgctccgt aatgccctcc ggcctggcaa tataaggcgg caaagccagc
     1141 gccccgctgc gcgccagggc ggcgtagaaa tcatccgcca caaaccgcag caaagctcca
     1201 ccgccttcca gaacctccag cacctcagcc gaaaattccg gatcaatcac cagcacatcg
     1261 ccttcatgca cgcgcttggc attgcgcagc aacacgcgcc acgagccgtc atccagccgc
     1321 ctgtccagcg taatcccaat ccgcgccgcg ccgcgcatcg ccgtcagctg cgccggaatc
     1381 accttggtgt cattcaccac cagcaaatca cccggccgca acaaccccgg caaatcccgc
     1441 accacataat ccgcgagccc cgccgccccc acatgcagca accgcgctga atcccgcggc
     1501 cttgcggggg acaccgcaat gcgctcggcc ggcagatcgt agtcgaagtc ggagaggttc
     1561 atgggcgtga ctcgcagggg gctacgcgcc cctggcgcag gggtgcaggg gggcgcgcag
     1621 cccccctgtg agtcacaccc atgacctcac gctccgagat acgacgcaag ctcgatcaaa
     1681 ttgccgtcgg ggtcgcggca atagacggac atgatctcac cgagggcgcc gatgcgcgcg
     1741 acggggccgc gttcgatgga gacaccgcag gcatggagct gggcgatgac atcttccggc
     1801 cccaccgcga cgacgaagca cagatcaagc gtacccggct tggtttcgtg ggcgtgcggg
     1861 ataacttccg agccaacctc gtgcagattg attttctgcg cgccgaagcg cagcgcggtg
     1921 cggtttttgc cgccatattc ctcgcgctcc atgccaagca cgcgctggta ccagccggcc
     1981 gtgacctgca ggtcacggca cgtcatcacg acatgatcga tacggtcgac ggtgaatttc
     2041 atgggacctc aggcaagatc ggcaaagaaa tcattgcctt tgtcatccac cacgatgaag
     2101 gcggggaaat ccttcacctc aatcttccac acggcttcca tgccgagctc cggatattcc
     2161 agaacttcca ccttggtgat gttgttctgc gcgagaacag cggcggggcc gccgatggag
     2221 ccgagataga agccgccata tttatgacag gcctcacgca cggctttcga gcgattgcct
     2281 ttcgccagca tcaccagaga gccgccggcc ttctggaatt cttccacata ggaatccatg
     2341 cggcccgctg tggtcgggcc aaaactgccg gtgggcaggc cttccggcgt cttggccggg
     2401 ccggcgtaat agacagggtg gttcttgata tagtccggca ggccctgccc ggcatcgagc
     2461 cgctctttca gcttggcatg ggcgatgtcg cgcgccacga cgatggtgcc ggtgagcgcg
     2521 acgcgggtct tgatgggata ggctgagagt ttcgcgagga tatcggccat gggttggttg
     2581 aggtcgatcg ccaccacatc gccgccgaga tgttcgtcgg taatctcagg cagatatttc
     2641 gccggctccg tctcgagctg ctccagaaac acgccatcct tggtgatctt cgccttgatc
     2701 tgacggtccg ccgaacagga cacgccgagc ccgatgggca ggctcgcgcc atggcgcggc
     2761 aggcggatga cacgcacatc gtggcagaaa tatttgccgc cgaactgcgc gccgatgccg
     2821 atcttgcgtg tgatttccag caccttctgt tccatctcca catcacggaa ggcatggccg
     2881 gtggcgctgc cctcggtcgg gagatgatcg agatatttgg tcgagcccag cttcactgtt
     2941 ttcagattca attcagccga agtgccgcca atgacgatgc aaagatggta aggcgggcag
     3001 gccgaggtgc cgagcgtctt gattttctgt tccagaaacg aatagatctt ctccggcgtc
     3061 agggtcgcgc gggtttcctg aaacagatat gttttattcg ctgatccacc gcccttggcg
     3121 atgaactgca gatggaactc gtcggcgtga tgctcgcctg gtgcggccat aatatcaaac
     3181 tgtaccggca aattattgcc cgtgttcttc tcgtcgaaca tggtgagcgg cgccatctgc
     3241 gaatagcgca gattcgtttc ggtataggtg cgggacacgc cccaggagaa ggcttcctcc
     3301 tcatcgcctt ccacccacac gcgctggccc ttcttgccga acaccaaagc cgtgccggta
     3361 tcctggcaca tcggcagcac gcccttcgcg gcgatcacgg cattcttgag gaattccatc
     3421 gccacatagc ggtcattctc ggacgcctcg gaatccttca ggatattcgc cagctgcgcc
     3481 agatgcgccg ggcgcagcag gtgcgacaca tcatggaacg cctcgaaagc cagcgccgac
     3541 agcgcatccg cgctcacctt cagcacgttc ttgccatcga tttcgatgct ggaaacgccg
     3601 tcaatgtcga gcttgcgata agtggtggta tcctcgccca gcgggaacat cggcgaatag
     3661 gtgaaaccag ggctgcgttt acttgtcgcg ttcatcgtct cagtctttct gtctcttccg
     3721 gaaggcatcc aggctaacca cgtcggcggg gccgtcggtg ggacgggagg gcgggtcatc
     3781 cccttctggg gctggaacat cggcggcctt caccgtctcg ggcagcgtca cctcgaattg
     3841 caggccaaac cgcacctcgg ggtcggcgaa gctggtgatg gcggcggtgg ggatgatcag
     3901 ggtcgcggga ataccggaaa agctcaaccc cacggagagg atcttgtttt cctcatccag
     3961 cgtcagccca tggaactggt gctgcagcac aatggtcatc tcgtccggat attgcgtgcg
     4021 cagccggtcg gggatctgca cgccgggata ggcggtcttg aaggtgaggt agaaatgatg
     4081 cccgcccggc aggccatgcg ccgccacatg gcgcagcgcg ctcaccacca cctggcgcag
     4141 cgcatcctgt gtccactcat cgtacggcaa tagagattcc ggtacgttca gatcatcctc
     4201 agccattatc ccatccttgt gcccgccgcc ggctagacgc ggcgaatttt agcgcgcttc
     4261 gcgctcgtaa tgccggtaat atttatcggt gaccagatcg gtttgcacca caatcgagat
     4321 atccgtggtg ttgaactgct cgtcgatcac cgccccctcg ccgacaaacc cgcccaggcg
     4381 cagatagccc ttgatgagcg gcggcaggcg cagcatggcc cgcttggggt cggtcgggcc
     4441 agtggcctcg cggcgcatct ccacatagcg atccggcaaa gcgcgcgggc ggatggccgc
     4501 cggcgccata tggtgggtag cgagataggt cagctcgccc gccagcgcat ccgggtcggt
     4561 gccggccaga gaggcgcagc cgaacatcag atctatgccg tagtggaaca cataggccgc
     4621 gatgccgcgc cagagcagct gcattaccgc gcggttgcgg taggcactgg cggtgcagct
     4681 gcggcccagc tccagcttgt tgccggcaaa atttttcagc gcggaaatat cgtactcgct
     4741 ctccgagtag aaacgcccat gccgcagcgc cgcttcctcg cggatcagcc ggtaggtgcc
     4801 gacgacgctg ctcgcaccct cgcccagatc atggtccacc accagcagat ggtcggcgat
     4861 ctcgtcgaac tcgtcgcggt cgcgccttgt ggccagggtc tgcgcatcgg ccttggcccc
     4921 catctcctcg tagaagacct ggtagcgcag cgcttgcacg gcatcgagct catcccggtt
     4981 gaccgccagg cgcacaccga gattgctggc gcgcaattcc gtaaaaccgg gcgccgcgtt
     5041 gccgacagtg aagcgcggca attcagggat aaggttctgg ttcactgacc cgtccgccgg
     5101 ccatacagct cgatttttat gacctcgaca tcgaacccct gcgccttggc gatgtcttgc
     5161 aacattgact cggcttgagg cgctgaaaat tcgaccaccg tgcccgtctc ctgatccacc
     5221 agatggaaat ggtgcttgtc cgcgctgggc tcataccggg cgcgccggct gccaaggtcg
     5281 cggcgggata aaatcccctt tgattccaac agcctgacgg tgcggtacac agtggctagc
     5341 gaaatgccgg gatcgacgcg attcgcccgc cggtgcagct cgtccacatc cgggtggtcg
     5401 gtcgcttcgg acaacacccg cgcaatcacc cggcgcggac ctgtcatctt cagcccgttc
     5461 tctatgcaca ggcgctcgat gcttatatcc atcggtgagc cttgtggccc aaagttttgc
     5521 tccggtccag ccttattaag agaatgatca tgtcccaaat tgccctgcca gtgcatgaca
     5581 aagccataga catcacggcc gagacctgcc ccatgaccta tgtgcgcacc cgccttgcac
     5641 tggacacgat ggatacaggg caaattctgc tggtgcgcct caaaggcgaa gacccgctgc
     5701 gcaacgtgcc ccgtgccgcc gccgaccaag gacacgacct actggaattg ctggagcaaa
     5761 ccgatggcac ttggatcctg gtgatccaga aagggtaagg ggcttcgccc ctgccctcag
     5821 atctccagca gcaggcggcg cgggtcttcc agcgactcct tgacgcgcac caggaaagag
     5881 acggcttcgc ggccatcgat gatgcggtgg tcgtaggaga cggcgaggta catcatcggg
     5941 cgggccacga tctggccatt gatgacaacg ggacgctcct ggattttatg catgcccagg
     6001 atggcggact ggggcgggtt gaggatgggg gtgctcatca gcgagccata gacgccgcca
     6061 ttggtgatgg agaaggtgcc gccggagagc tgttccagct tcaatgtgcc gtccttggcc
     6121 gccttggcga agccagcgat ttccgactcg atctgggcga tgctcttctg gtcggcgtcg
     6181 cgaataacgg ggacaaccag gccgttggcg ccgccgacgg cgatgcccat gtgcacgaaa
     6241 tgcttgtaga caatgtcgtc accgtcgatt tcggcgttga cggcggggaa ttcctgcagc
     6301 gcggcgcaga cggctttgac gaagaagccg ttgaagccaa ggcggatgcc ctggtgcttc
     6361 ttctcgaaag cttccttgta ttcagagcgc aaccccatga tcgcgctcat atccacctcg
     6421 ttgaaggtgg tgagcatggc ggcggtgttc tgcgcgtcct tcagccggga ggcgatggtc
     6481 ttgcgcaggc gcgtcatctt cacgcgctcc tcgcgcacat ccggggtgcg ggcaggtttc
     6541 accaacggcg gggcctgctg cacggcgggc ttgttgagga attccagcac atcgcccttg
     6601 gagatacggc catccttggc ggtaccggtg atgctttcgc cggaaatgcc tttatcttcc
     6661 atcagcctgg ccgcggcggg cagggcgccg gcaccagggc gggcgacggg gccgggtgct
     6721 gcctgcgggg cgtgtacgcc ggtcatcacg ggcgggatgg gagcgggagc cgccggcgcc
     6781 gcgccagcac cagcctcgac gcgcccgagc aaaccaccca cctcgacctc ggcgccttcc
     6841 ggcgcgatga tttcggccag cacgccggct tccggcgcgc ccacttccat tgtcacctta
     6901 tcggtctcca gttcgaccag cggctcatcg gcgagcacgg cctcgccgac cttcttgatc
     6961 caacgggcga tggtggcgga ggtcacgctt tcgcccagcg tggggacttt gatgtcggtg
     7021 gccatattgt ctcctaagct tttcgttgct tttaacgatt agactgcagc agtcgttgct
     7081 tcaataaagg acgcgcgcgg ctgaagcggg ccagccgcgc gcggagcaga aatcaggcgc
     7141 tcaaggcctg gtcaaccagg gcggcctgct cggcggcatg caccttggcc aggcccgtgg
     7201 cgggcgaggc ggcggcgggg cggccgacat agaccggccg cttggcaaga ttgccgatga
     7261 gcccgagcac atgctccagc ttgcggtcga ggaaattcca cgcccccata ttctccggct
     7321 cctcctggca ccacaccact tcggcgccca cgtaaggctc cagcacggct ttgagcgcgc
     7381 gcaccgggaa gggatagaac tgttccagcc ggacgatggc gacatcgttg atgccacgct
     7441 cgcggcgttc cgctagcaaa tcgtaataaa ccttgcctga gcagagcacg acgcggcgga
     7501 tatggtcggg cggcagcaat tcatccactt cggggtagac gaatttatag ctggagcctt
     7561 cggccatttc gctcagctgc gaaacgcaga gcttgtgacg cagcagggat ttgggcgtca
     7621 tcaggaccag cggcttgcgg aaattgcgct tgagctggcg gcgcagcgcg tggaagtaat
     7681 tggccggcgt cgagatgttg cacacattca tgttgtgctc ggcgcagagc tgcagatagc
     7741 gctccagacg ggcggaggaa tgttccggcc cttgcccctc atggccatgc ggcagcaaca
     7801 tgaccaaacc gctcatgcgc agccatttcg tttcgccgga ggcgatgaac tggtcgatga
     7861 tgacctgcgc gccattagcg aaatcgccga actggccttc ccacagcacc agcacgttgg
     7921 ggtccgccag cgtgtagcca tattcgaagc caagcacgcc ggcttcggag agcagcgagt
     7981 tgaaaatctc aatcggcgcc tggccggcac ggatattgtt gagcggggta aattcgttct
     8041 ggttggtctg gtcgatgagc acggcgtggc gctgcgagaa ggtgccgcgc tggcaatctt
     8101 cccccgagag tcgcacacgc tggccatcca gcagcagcgt gccataggcc agcgcctcgg
     8161 cggtcgccca gt
//
LOCUS       DASQCV010000378         2122 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_746503, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000378 DASQCV010000000
VERSION     DASQCV010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_746503"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..801
                     /locus_tag="VEQ16_05720"
     CDS             <1..801
                     /locus_tag="VEQ16_05720"
                     /inference="COORDINATES: protein motif:HMM:TIGR03469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP63363.1"
                     /translation="WMGKLWAVHQGVQEAKRHAPDYLLLTDADIVHSPANLATLVRHA
                     VNGGYDLVSIMATLRCQTVAERALIPAFVFFFFMLYPPSWIRSPRHRTAGAAGGCILI
                     RRETLELIGGIERIRRELIDDCALARAVKQAGGQVWLGLSSTVRSIREYDTFGAIGRM
                     ISRTAFTQLRHSWLLLAGTVAGLAVMYGVPPVAALAGSRLGAAAWLLMAVVYLPVLRL
                     YRRSPLWALLLPLAAVFYAGATVHSALAYRQGTGGLWKGRVQDISKDR"
     gene            937..1458
                     /locus_tag="VEQ16_05725"
     CDS             937..1458
                     /locus_tag="VEQ16_05725"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HYP63364.1"
                     /translation="MLTILRLLLVPFVIRSILGAHHTRALALFAVAAITDVLDGAAAR
                     HFDLRSQTGAYLDPIADKALLSGVFLALAATGSLPWWVVAIIFGRDIYLLAAAAILLW
                     LTPVRNFAPSSWGKTSTFVQIVTAILWMARNVLGTSAIDALSSAMLWPCAAFTIASGL
                     HYTWRGAHLARVD"
     gene            1488..2069
                     /locus_tag="VEQ16_05730"
     CDS             1488..2069
                     /locus_tag="VEQ16_05730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63365.1"
                     /translation="MRTGLLMTRYLPARYHLWFGVAAVALTGFSGWLGWSWPWAYIPA
                     GLSLLTAAALFAMAFHPPIEVHDGYLSIGKRHIPWMDIRRLDRTGWISPLVLRLTLYD
                     DTRFLLVYPGDLDSCNSLLRHLRRFASDALIDGIPYRQYWGELLAPGSERKQVPSTRY
                     RILRPEDEAEVERLYQRLKTVGNLDQKNSSDEK"
BASE COUNT          324 a          669 c          668 g          461 t
ORIGIN      
        1 tggatgggta aactgtgggc ggttcaccag ggtgtacagg aagccaagcg gcacgctcct
       61 gattacctgc tgctcaccga cgccgatatc gtgcactccc cggcgaacct ggcaacgctc
      121 gtacgacacg cagtgaatgg cggctacgac ctggtatcga tcatggccac tctgcgctgc
      181 cagaccgtgg ccgaacgcgc gctcatcccg gcgttcgttt tctttttctt catgctctac
      241 ccgcccagtt ggatccgtag cccgcgtcat cgaaccgccg gggcggccgg tgggtgcatc
      301 ctgatccgcc gcgaaaccct cgagctcatt ggcggcatcg agcgcattcg ccgcgagctg
      361 atcgatgact gcgctcttgc gcgagccgtc aagcaggccg gtgggcaggt ctggctaggc
      421 ctgagctcca ccgtccggag catccgcgag tatgacacct tcggcgcgat cgggcgcatg
      481 atctcccgga ccgctttcac tcaacttcgt cactcgtggc tgttgcttgc cggtacagtg
      541 gcgggtctgg ccgtgatgta tggcgtgccg ccggtagcgg cgctggccgg cagccgcctg
      601 ggtgccgccg cgtggttgct gatggccgtg gtgtacctgc cggtactccg gctctaccgc
      661 cgctcgcccc tctgggcgct cttgctgccc ctggcggcgg tgttttatgc gggcgcaacc
      721 gtacattcgg ccttggccta ccgacagggc accggcggcc tgtggaaggg gcgggtccag
      781 gatatttcca aagatcgata ggaagatcgg gtggagtgct aagaggatcg ccgagctact
      841 cgtcggatca tgactggttg cttgcgccgc gtcggcgccg gtcgccgccg gcaatcgcgc
      901 tacactcgac ttctgatgcc gcgctgggtt cccaatttgc tcaccatcct gcgactgctg
      961 ctggtcccgt tcgtcatccg ctcgattcta ggcgcacacc acacccgcgc gctggcactg
     1021 ttcgcagtgg cggcgattac cgacgtgctg gatggcgctg ccgcgcggca cttcgatctc
     1081 cgcagccaga cgggcgcata cctggatccg atcgccgaca aggctctgct cagcggagtg
     1141 ttcctggcgc tggccgccac cggctccctg ccgtggtggg tggtcgcgat tatctttggg
     1201 cgggatattt atcttttggc cgcggctgcg attctattgt ggctcacccc ggtgcggaac
     1261 ttcgcgccga gctcctgggg caagacgtcc acgttcgtgc agatcgtgac cgcgatcctg
     1321 tggatggcgc gaaacgtgct gggtacatct gcaatcgatg cgctatcttc cgcgatgtta
     1381 tggccttgcg ccgccttcac catcgcgagc ggccttcatt acacctggcg cggcgcacac
     1441 ctggcgcgcg tcgattgacg tggtgcggct agagagttag gctaagagtg agaaccgggc
     1501 tgctcatgac tcgatatttg ccagcacgct atcacttgtg gttcggagta gcggcggtag
     1561 cactaacggg cttctccggg tggctcggct ggagctggcc ttgggcctat attcccgccg
     1621 gcctgtcgct tctcactgcc gcggcgttat tcgcgatggc cttccatccg ccaatcgaag
     1681 ttcatgacgg ttacctgtcg atcggcaagc gtcacattcc ctggatggac attcgccggc
     1741 tggatcgcac gggttggatt tcacctctgg tgctgcgctt gacgttgtat gatgacacgc
     1801 gcttcctgct ggtttatccc ggcgatctgg attcctgcaa cagcttgctc cgccacctcc
     1861 gccggttcgc tagcgatgcc ctgatcgacg gcattcctta ccgtcaatac tggggcgagt
     1921 tgctggcgcc gggctccgag cgcaagcagg ttccttcgac gcgctaccgg atcctgcggc
     1981 ccgaggatga agctgaagtc gagcggctgt atcaacgtct gaagacggtg ggaaacttgg
     2041 atcagaagaa ctcctcagac gagaagtaag ctcgtgcctc agccatcggc gtccgccgcc
     2101 tagcccatgg ggaaattact gg
//
LOCUS       DASQCV010000379         1507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2404886, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000379 DASQCV010000000
VERSION     DASQCV010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2404886"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /gene="rpmA"
                     /locus_tag="VEQ16_05735"
     CDS             complement(<1..233)
                     /gene="rpmA"
                     /locus_tag="VEQ16_05735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008851550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HYP63366.1"
                     /translation="MAHKKAGGSSRNGRDTAGRRLGVKKAGGQAVVAGNIIIRQRGTK
                     VKPGLNVGVGRDHTIFALVDGKVVFTRRSDDRV"
     gene            complement(251..565)
                     /gene="rplU"
                     /locus_tag="VEQ16_05740"
     CDS             complement(251..565)
                     /gene="rplU"
                     /locus_tag="VEQ16_05740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012227565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HYP63367.1"
                     /translation="MFAVIRTGGKQYRVTPDAVLKVEKLEAEAGSTVTFTDVLAVGGE
                     GSLKLGAPVVAGASVTATVIAQDRLDKVIIFKKRRRQNSRRKNGHRQHVTVLRISGIN
                     AA"
     gene            749..838
                     /locus_tag="VEQ16_05745"
     tRNA            749..838
                     /locus_tag="VEQ16_05745"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:783..785,aa:Ser,seq:cga)
     gene            complement(974..1309)
                     /locus_tag="VEQ16_05750"
     CDS             complement(974..1309)
                     /locus_tag="VEQ16_05750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63368.1"
                     /translation="MMQPDPKQHPRVPLPVGYRQAIVTAITVLLGFSLLFLRFFNFEL
                     TGPWHLISGLTALLLTLAIILQMVALWRSLQVKDDDEAEYGHTLRWFLASVILLLLSL
                     LGAFASVNL"
     gene            complement(1306..>1507)
                     /locus_tag="VEQ16_05755"
     CDS             complement(1306..>1507)
                     /locus_tag="VEQ16_05755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63369.1"
                     /translation="RRLKFRRLAVKLAEHVKAREPDFRALARDVIATETVFMSSNARH
                     ELGLEYLWLHKMERGRKAPLAL"
BASE COUNT          315 a          447 c          470 g          275 t
ORIGIN      
        1 tgcacgcggt catcggagcg gcgggtgaac accaccttgc catcgacgag ggcaaaaatc
       61 gtgtggtcgc ggccgacgcc gacattgagg ccgggcttca ccttggtgcc gcgctggcgg
      121 atgatgatgt tgccggcgac gacagcctgg ccaccggcct tcttgacgcc aaggcgccgg
      181 ccagcggtat cgcgaccgtt gcgggacgaa ccgcctgctt tcttatgtgc catattactg
      241 ctccttcgcc ttaggccgcg ttgatgccgg aaatgcgcag cacggtgaca tgctggcgat
      301 ggccgttctt gcggcggctg ttctgccggc ggcgcttctt gaagatgatg accttgtcca
      361 ggcggtcctg ggcaatgacg gtggcggtga cggacgcgcc ggcaaccacc ggggcgccga
      421 gcttcaggct gccttcgccg ccaacggcga gaacatcggt aaaggtaacc gtgctgccgg
      481 cttccgcctc cagcttctca accttcagca ccgcgtcagg ggtgacgcga tattgcttgc
      541 cgccggtgcg gatgactgcg aacatgttaa aaatcctggt ctcgacaaaa taattggcgc
      601 ggccgggaag gcccggtcac gagagtggcg cgttatagcc gggcaggaga cggagtcaat
      661 gctgattcgc atggcagcgg ggcgcgaatt tcgcaacgcc cattgcggcg ggcagggcgg
      721 ccgcttataa gcccgctcca gcgcccatgg agaggtgcca gagtggccga ttggggcagt
      781 ctcgaaaact gttgtacgtg caagcgtacc gtgggttcga atcccaccct ctccgccagg
      841 acctcatgca ccggcgtgca ccgccgcccc aaaaacccag gtaaatcagc cagtttcagg
      901 ttatcgcggg ctcatttccg ttgcggcacg ccggtcgcgg gtaagaagcc cgggataaat
      961 aatccacaaa agctcacaag ttaactgagg caaacgcgcc taataagctc agcagcagca
     1021 gaatgaccga agcgaggaac cagcgcaggg tatgcccata ttcggcttcg tcgtcgtcct
     1081 tcacttgcaa ggaccgccag agcgcaacca tttgcaagat gattgccagc gtcagcagca
     1141 gggccgtgag gcctgagatg agatgccacg gtccagtgag ctcaaaattg aagaagcgca
     1201 ggaaaagcag cgagaatccg agcagcacgg tgatcgcggt gacaatcgcc tgccggtagc
     1261 cgacagggag cggcacgcgc gggtgctgtt tcggatctgg ttgcatcaca aagcgagcgg
     1321 ggcctttcgg ccccgctcca ttttatgaag ccacaaatat tctaaaccca attcatgcct
     1381 cgcgtttgag gacatgaaca ccgtctcagt ggcaatcaca tcacgggcca gcgctcgaaa
     1441 atcgggttct cgcgccttaa cgtgctctgc taacttaacc gcgagccggc ggaacttcag
     1501 gcggcgg
//
LOCUS       DASQCV010000380         2791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2073287, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000380 DASQCV010000000
VERSION     DASQCV010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2073287"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..584)
                     /locus_tag="VEQ16_05760"
     CDS             complement(<1..584)
                     /locus_tag="VEQ16_05760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HYP63370.1"
                     /translation="MLDKNFEPASAEARLYRGWEEAGAFACHPESNEAPYSIMIPPPN
                     VTGSLHVGHALTMTLQDIFVRYRRMTGRDVLWQPGTDHAGIATQMVVERLLDKEGVSR
                     KQLGRETFLSRVWQWKAESGGAITAQLRRLGASPDWSRERFTMDEGLSTAVREVFVRL
                     FEEGLIYQDKRLVNWDTQLQTAISDLEVESRESKG"
     gene            complement(728..1336)
                     /locus_tag="VEQ16_05765"
     CDS             complement(728..1336)
                     /locus_tag="VEQ16_05765"
                     /inference="COORDINATES: protein motif:HMM:NF022155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2497 domain-containing protein"
                     /protein_id="HYP63371.1"
                     /translation="MSEGNGIANNAGPASGSEPSMEEILASIRRILTEEESERAAAGG
                     SGDEADDDILVLDSTAMVPASASEASGGPLSSESTLDSQGVAGQMAEGEAQFIPASVV
                     QPNQIFSTLNEKENYMDDQVQSPEGLVGDKVASEIASTVGSLVRSVSAERAVHIGRPG
                     ITIEDLVREEVKPVLKAWLDSHLPSLVERVVRAEIGRVVDRM"
     gene            complement(1349..>2791)
                     /locus_tag="VEQ16_05770"
     CDS             complement(1349..>2791)
                     /locus_tag="VEQ16_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family outer membrane protein"
                     /protein_id="HYP63372.1"
                     /translation="GTAVSDNGAGTLPATLTDALVAAYNNNATLQEQRAALRQADEGV
                     PTALSGWRPQVSLLGSYGRTSETLTTQQVNQFTGALSDVTTPEYYNQSTAEAQITQNV
                     FNGGKTLAQTREAKNQVYAARAQLLSTEQQVFLNVVQAYVTVVTDRQVLALQESNEDV
                     LRQQLKDTTTQFNVGEITMTSVAQAQSSLAQAVEQVQVAQGNLNIAGENFRQLVGAYP
                     AGNLAPPQPLLLPVNSKDEAAAVAVANNPNVIAAEFTNAADKDAIDVAFSALMPQIQV
                     QASAFHETGQSYSGSQLKGGSVVGQLTIPLYQGGQEYAAIRQARAKAQQSFASILDAQ
                     RTAFYQGSQAWEAIVSTRAAIIAANVAIKANAIALDGTEREELVGTRTTLDVLNAQQL
                     LLNSQVEQVQNIGTLVNNSYTVASAIGRLTVRDLGLPVQEYDDLKYYNAVKYAAFGTG
                     ESADREAGIAPDGTLLDAPPAPAAASGPAP"
BASE COUNT          493 a          922 c          835 g          541 t
ORIGIN      
        1 cccttgctct cgcggctctc cacctcaagg tcggagatgg cagtttgcaa ctgagtgtcc
       61 cagttcacca gccgcttatc ctggtagatc agcccttcct cgaacagccg cacgaacacc
      121 tcgcgcacgg cggtcgagag cccctcatcc atggtaaacc gctcgcgcga ccagtccggc
      181 gaggcgccga ggcggcgcag ctgcgcggtg atggcgccgc cggactcagc cttccattgc
      241 cacacgcgag agagaaacgt ttcgcgcccg agctgcttgc gtgagacgcc ctctttatcc
      301 agcagccgct ccaccaccat ctgcgtggcg atgccggcat ggtcggtgcc cggctgccac
      361 agcacgtcgc ggccggtcat acggcgatag cggacgaaaa tatcctgcaa cgtcatggtg
      421 agcgcatggc ccacatgcag gctgcccgtc acgttgggcg gcgggatcat gatgctgtag
      481 ggggcttcgt tgctctcagg gtggcaggca aacgctcccg cctcttccca gccacgatag
      541 agccgcgcct ccgccgaggc cggctcgaaa ttcttatcca atatcgtcac aacgcagctc
      601 cgtcaccgct caagcggtgc cttaatccaa ttccccgggc ggcgtgtcaa aacctggcgc
      661 cgcgaccccg gcgccagcaa actggctcaa cccgcgccgc gcatcccggc ggcgcggcgg
      721 agcaaaatta catgcggtca accacgcggc cgatttcggc ccgcacgaca cgctcaacca
      781 ggctcggcag gtggctatcg agccaggcct tcagcaccgg cttcacctcc tcgcgcacca
      841 gatcctcgat ggtgatgccc ggacggccga tatgcacagc gcgttcagcg ctgacgctgc
      901 gcaccagaga gccgaccgtg ctggcaattt cgctggcaac cttgtcgcca accagcccct
      961 cgggggattg tacctgatcg tccatataat tttccttttc gttgagcgtc gaaaatattt
     1021 gatttggctg gaccactgaa gcgggaatga attgcgcctc cccttctgcc atttgcccgg
     1081 caacgccctg gctgtccaga gtagattcgg aactcaaagg acctccggat gcctcggacg
     1141 cggaagcggg caccatggcg gtggaatcaa gcaccagaat atcgtcatcg gcctcgtcgc
     1201 ccgatccgcc ggcggcggcg cgttcgcttt cctcctcggt caaaatccgc cggatcgagg
     1261 cgaggatttc ttccatcgac ggctcggaac cgctcgcggg ccccgcatta ttagcaatac
     1321 cgttaccttc actcatccct ttgacccttc atggtgccgg cccgctcgct gccgctggcg
     1381 ccggcggagc atccagcagc gttccatcag gcgcgatgcc cgcctcccgg tcggcgctct
     1441 cgcccgtgcc aaaagcggca tatttgacgg cattgtagta tttcagatcg tcatactcct
     1501 gtaccggcaa acccagatcc cgcaccgtca accgcccgat ggcggaagct acagtgtagc
     1561 tgttgttaac cagtgtacca atattctgaa cctgttccac ctgagagttc aacaataatt
     1621 gttgagcgtt cagcacatca agtgtggttc tcgtaccaac cagctcctcg cgctcggttc
     1681 catccagcgc aatggcgttg gccttgatgg ccacattggc cgcgatgatg gccgcgcggg
     1741 tggacacaat cgcctcccag gcctggctgc cctggtagaa agcggtgcgc tgggcgtcga
     1801 gaatggaggc gaaactctgc tgcgccttgg ccctggcctg gcggatggcg gcatattcct
     1861 gcccgccctg atagagtggg atggtgagct ggccgaccac cgaaccgcct ttcagttgcg
     1921 agccggaata ggactggccg gtttcatgaa aggccgaggc ctggacctgg atctgcggca
     1981 tgagggcgga gaaggccacg tcaatcgcat ccttgtcggc cgcgttggtg aattccgccg
     2041 cgatcacgtt cggattattg gccaccgcca ccgcggccgc ctcgtcctta ctatttaccg
     2101 gcagcagcaa aggctgcggc ggggcgaggt tgccggccgg gtaggcgccc acgagctggc
     2161 ggaaattctc accggcgatg ttgagattgc cctgcgccac ctgcacctgc tccaccgcct
     2221 gggcgagcga ggactgggcc tgggccaccg aggtcatggt aatctcgccg acattgaact
     2281 gcgtggtggt gtccttcagc tgctggcgca gcacatcctc gttgctctcc tgcaacgcca
     2341 gcacctgccg gtcggtcacc accgtcacat aggcctgcac gacattgagg aaaacctgct
     2401 gctcggtgga gagaagctgg gcgcgcgcgg catagacctg atttttcgcc tcgcgcgtct
     2461 gcgccagcgt cttgccgccg ttaaagacgt tctgggtgat ctgcgcctcg gcggtcgact
     2521 ggttgtaata ttccggcgtg gtcacatcgc tgagggcgcc agtgaactgg tttacctgct
     2581 gagtcgtcaa ggtttcgctg gtgcgcccgt aggagcccag cagcgaaacc tgcggccgcc
     2641 agcctgaaag cgcggttggc acgccttcat cggcctggcg caacgcggcg cgctgctctt
     2701 gcagggtggc gttattatta taggccgcca ccagcgcatc ggtgagggtc gcgggcaggg
     2761 tgcccgcacc attgtccgaa accgcggtgc c
//
LOCUS       DASQCV010000381         1588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2240516, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000381 DASQCV010000000
VERSION     DASQCV010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2240516"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..457
                     /locus_tag="VEQ16_05775"
     CDS             <1..457
                     /locus_tag="VEQ16_05775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007398796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HYP63373.1"
                     /translation="VAAWQGLRVHAFTRIGDGAAQTFALSLGAVWAGGSDDMPPEPLD
                     AAIIFAPVGALVPAALAAVRKGGRVVCGGIHMSDIPSFPYSLLWQERQLVSVANLTRA
                     DAAEFLSIAPRAGLRTQIVRYPLASANAALADLRDGRLQGAAVLLPEGG"
     gene            616..1503
                     /locus_tag="VEQ16_05780"
     CDS             616..1503
                     /locus_tag="VEQ16_05780"
                     /inference="COORDINATES: protein motif:HMM:NF024772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP63374.1"
                     /translation="MPFTAVAQQTIKLGLLPFSESLAAVIADRQGYFKEAGIEVEIAK
                     FDSGAIAVPVLQSGRMDIVLSSTVSTFQAIEQGLDAVVLAPGAVVRTTPPDTTTAVLV
                     RKGSLRSPKELEGKRVAVNVINSTAWLHAVAWLDKHGVDRSKVRFSEVPFPQMNDPLL
                     NGQLDAIVQVEPFRSALMATGNAEIVGWPYVETAPDTDITQYIALTSWVQKNHATAAK
                     FVSAVAKGAQFAASNEAATRDINQQFTNLNPVLKDKVLLPRLGATINLKEMNHTMQMM
                     EKYGLLKTPVDLSKRVFMP"
BASE COUNT          275 a          478 c          527 g          308 t
ORIGIN      
        1 agtcgcagca tggcaggggc tgcgcgtcca tgccttcacg cgcatcggcg atggcgcggc
       61 gcagacattt gctctgtcct taggcgcggt atgggccggc ggctccgacg atatgccgcc
      121 tgagccgctt gatgccgcga tcatttttgc tccggtgggc gcgctggtgc cggctgcgct
      181 ggcggcggtg cgcaagggcg gccgcgtggt ttgcggcggc atccatatgt ccgacattcc
      241 gagctttccc tattctctgc tgtggcaaga gcgtcagctg gtctcggttg ccaatctcac
      301 ccgcgccgat gccgccgagt ttctttcgat cgccccgcgt gccgggctga gaacgcagat
      361 cgtgcgctat ccgcttgcga gcgcgaatgc cgcgctcgct gatttgcgcg acgggcgctt
      421 gcagggcgcc gccgtgctgc tgccggaagg cgggtaggtt gttagatgac tggggagaga
      481 gcctcggtta gggttgcgcg gaaacctggg caggcaactt tccgctcagg cctcgccggt
      541 tcaaagctgg aggatgcctt gatccaaatt cgacgctggt cgcttgcggg ggcgcttgcc
      601 gcaggcgtac tgctgatgcc attcaccgcg gtggcccaac agacgatcaa gctcggcctg
      661 ctgccattct ctgaatcgct tgccgcagtc attgcggacc ggcagggcta cttcaaggaa
      721 gcaggcatcg aggtcgagat tgccaagttc gacagtggcg cgattgcggt gccggtgctc
      781 caatcgggcc gcatggatat cgtgctaagc agcacggtct cgacatttca ggcgatcgag
      841 cagggactgg atgccgtcgt gctggctccg ggcgcggtgg tgcgtaccac gccgccggac
      901 accaccacgg cggtgttggt acgcaagggt tcgctgcggt cgccgaagga gctggagggc
      961 aagcgggtgg ccgtcaacgt catcaacagc accgcctggc tgcatgcggt ggcctggctc
     1021 gacaagcatg gggtcgaccg cagcaaggtc cgcttctccg aggtgccatt cccgcaaatg
     1081 aacgatccgc tgctgaacgg gcagcttgat gcaatcgtgc aggtggagcc gttccgctcg
     1141 gcgctgatgg cgaccggcaa tgccgagatt gtcggctggc cctatgtgga gaccgcgccc
     1201 gacaccgaca tcacccaata cattgccttg acctcctggg tgcagaagaa tcacgccacg
     1261 gccgcgaagt tcgtgagcgc ggtggccaag ggtgcgcagt tcgctgcctc gaacgaggcg
     1321 gcgacgcgcg atatcaacca acagttcact aatctcaatc cggtgctgaa ggacaaggtg
     1381 ctgctgccgc gcctcggcgc caccatcaat ctgaaggaaa tgaatcacac catgcagatg
     1441 atggagaaat atgggctgct gaagacgccc gtcgatttgt ccaagcgcgt cttcatgcct
     1501 tgatcgcggt ccatgggtcg acccggcagg gctattctgc gcgtctgcaa cctgcataag
     1561 gtttatacgg ctgcaggcac agccacca
//
LOCUS       DASQCV010000382         1535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_415574, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000382 DASQCV010000000
VERSION     DASQCV010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415574"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..229)
                     /locus_tag="VEQ16_05785"
     CDS             complement(<1..229)
                     /locus_tag="VEQ16_05785"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYP63375.1"
                     /translation="MARIYNLFIANEDVAGAETFPSINPYSGEAWAHIPQASPSQVAD
                     AIAAARHAFNSDWRKTTGKIRGQLLLKLADLL"
     gene            complement(243..1235)
                     /locus_tag="VEQ16_05790"
     CDS             complement(243..1235)
                     /locus_tag="VEQ16_05790"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYP63376.1"
                     /translation="MNHDCTGKSYLITGGASLIGSHIADALLAKGAGEVRLLDNFSLG
                     TPDTISHLVNDARVKLVRGDILRLNEIIDAAEGADGIFALAGFLTIPMAAQMPLGVAV
                     NTTGMVNTLEAARIAKVRRVIFSSSVAAYGGTAADVLTEDSPTTLATASPLSAIYGTS
                     KLLGENLGLFYQQKFGVEFNALRFSSVYGERQHERAINANGIAAMYEAIRRDEAPVIS
                     GDGKEVHDYIHVADVASGCVAAMLNGTGGDVLNLVTGKDSTLTEVAHTLLDVCGVTGV
                     QPVYREDSRQIKTAGGNHLGFSPDKAKTKISWSAQVDLREGLRRYVAWRDSQKH"
     gene            complement(1266..>1535)
                     /locus_tag="VEQ16_05795"
     CDS             complement(1266..>1535)
                     /locus_tag="VEQ16_05795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008945339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63377.1"
                     /translation="CGEMVGGLYYDNYPAGTGLVSGATFGRIAGRTAATKGANLPKNV
                     TAPEALPGRMAADANHALETAPKAPGNELVEKAPANTLVETSWVP"
BASE COUNT          268 a          447 c          515 g          305 t
ORIGIN      
        1 cgagcaggtc ggcaagtttt aagaggagct ggccgcggat tttgcctgtg gtcttgcgcc
       61 aatcgctgtt gaaagcgtgg cgggcggcgg cgatggcatc cgccacctgg gacggcgagg
      121 cttgcgggat atgcgcccag gcctcgccgg aataggggtt gatggaaggg aaggtttcgg
      181 cgccagcgac atcctcgttg gcgatgaaca gattataaat cctggccatg gcttcccctc
      241 gctcagtgct tctgcgagtc gcgccaggcg acgtagcgac gcaggccttc gcgcagatcc
      301 acctgggctg accaggagat ttttgttttc gccttgtccg ggctgaagcc gagatggttg
      361 ccaccggcgg ttttgatctg gcgggaatcc tcgcgataga cgggctgcac gccggtgaca
      421 ccgcacacat ccagcagcgt atgcgcgact tctgtgaggg tggaatcctt gcccgtgacg
      481 agattcagca catcgccgcc cgtaccgttc agcatggccg cgacgcagcc ggaggcgaca
      541 tcggcaacat ggatataatc gtgcacttcc ttgccatcac cggatatgac cggcgcctcg
      601 tcacggcgga tcgcctcgta catggcggcg atgccattgg cgttgatggc gcgctcatgc
      661 tggcgctcgc catagaccga ggagaaacgc agcgcgttga actcgacgcc gaatttctgc
      721 tggtagaaca agccgagatt ctcacccagc agcttggagg tgccatagat ggcggacagc
      781 ggtgaggccg tggcgagggt ggtgggcgag tcttctgtga gcacatccgc ggctgtgccg
      841 ccataggcgg cgacggaaga tgagaagatg acgcggcgca ctttcgcgat gcgcgcggct
      901 tccagcgtgt tcaccatgcc ggtggtgttc accgccacgc cgagcggcat ctgcgccgcc
      961 atggggatgg tgaggaagcc ggcgagggcg aaaatgccgt cggcgccttc cgctgcgtct
     1021 atgatttcgt tgaggcgcaa tatgtcgcca cggacgagtt tcacccgcgc atcgttgacg
     1081 agatgcgaaa tcgtgtccgg tgtgccgagc gagaaattat cgagcagccg cacctcacct
     1141 gcacccttgg ccagtagcgc gtcggcgatg tgcgagccga tgaggctggc gccgccggtg
     1201 ataagatagg attttcccgt acaatcgtgg ttcattttat actcccctgt tgcagcccgg
     1261 gttctttaag gaacccagct ggtctccacc agcgtgttgg ccggggcttt ttccaccagt
     1321 tcgttgccgg gggccttcgg ggcggtttcc aacgcatggt tggcgtccgc cgccatgcgg
     1381 cctggcaggg cctcaggcgc agtgacattc ttcggcagat tggcaccctt ggtggcggcg
     1441 gtgcggccgg cgatgcggcc gaacgtggca ccagagacca ggcccgtgcc ggcggggtag
     1501 ttatcgtaat aaagcccgcc gaccatttcg ccgca
//
LOCUS       DASQCV010000383         3851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1577958, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000383 DASQCV010000000
VERSION     DASQCV010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1577958"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..338)
                     /locus_tag="VEQ16_05800"
     CDS             complement(<1..338)
                     /locus_tag="VEQ16_05800"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HYP63378.1"
                     /translation="MTAPSIDALGQFELTQGLGPLGRAINFTNSNEAMLGAAIVIVLL
                     FVFGLKARALVPGRMQALVELLYEFVRNMCVDTIGEEGLRFFPLVFTIFSFILLGNLI
                     GLFPYFFAFTS"
     gene            complement(407..700)
                     /locus_tag="VEQ16_05805"
     CDS             complement(407..700)
                     /locus_tag="VEQ16_05805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HYP63379.1"
                     /translation="MSEGQDKKAFEQRLQAAEDAAQGPARESAAKQAGSARRAIELAM
                     RLGVEMVAAMVIAVVIGWGLDKLFHTSPWLMIVMVPVGMAAGIRNLVRAFGKE"
     gene            914..1987
                     /locus_tag="VEQ16_05810"
     CDS             914..1987
                     /locus_tag="VEQ16_05810"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0009008 - DNA-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HYP63380.1"
                     /translation="MPRELPLDQILLGDAGTMLRMLPDASVNCIFADPPYNLQLRGEL
                     RRPDDSLVDGVDEDWDRFTDFAAYDAFTRDWLGECHRILQKDGTIWVIGSYHNIFRIG
                     AMMQDLGFWILNDVIWRKSNPMPNFRGRRFTNAHETMIWAAKSQTSRYKFNYQAMKTL
                     NDDVQMRSDWTLPLCTGAERLKNNHGLKLHPTQKPEALLHRVIMASTSPGDVIVDPFL
                     GTGTTAAVAKRLHRHFIGIERHPAYVEAAWGRLKAEARASRTAVVAPPSGREAPRIAF
                     GSFVERGILPPGTQVMDKQRRVAAEVTAEGGLVSGPHRGSIHQVGAAVQNAPSCNGWT
                     FWHFERGGVLVPLDVLRKENPEG"
     gene            complement(2071..2247)
                     /locus_tag="VEQ16_05815"
     CDS             complement(2071..2247)
                     /locus_tag="VEQ16_05815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63381.1"
                     /translation="MMLVRHITKVLNLQLNKRAVSLLEYAMLAMFVAVASVGAVSSTS
                     ANVPPSQAKISSHQ"
     gene            complement(2397..2570)
                     /locus_tag="VEQ16_05820"
     CDS             complement(2397..2570)
                     /locus_tag="VEQ16_05820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HYP63382.1"
                     /translation="MLAWCMAQLHCLKLDRRAVTSVEYALIAALVALVIINGLATLGK
                     DVALTFNRVSSEL"
     gene            complement(2718..>3851)
                     /locus_tag="VEQ16_05825"
     CDS             complement(2718..>3851)
                     /locus_tag="VEQ16_05825"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYP63383.1"
                     /translation="RNRDPFVGGKEHAAAGWPAPRGLDLSQVPGQSNRPLIAGTLMPD
                     IVAVTRDDIRLTFACPDSTTVLDAAEEAGFYLPCVCRHGRCGTCRAHVLSGAYELAPH
                     EAPLPPGPGGVLLCRCRPIEDLVVALPCRDDQIGRRHVPERHATLEELTHAPEGWTTL
                     SVHLLREGEFGQEADFHAGQFMELRLPGTDLWQRLAMANAPNEEGVLEFLIAPAPDEP
                     LATWLTVAKRGITLQLRGPLGKFTLDEKSPRPRCFVGAGAGLAPLLAMLRHLAALRDR
                     TRMHCVIEAARTDLPFLERSLATLRGALPQLTVALIPANAGTALQAELEKLPGADIYA
                     AGPQDLLDLVYVTAETLGVPPAQLRCVAVGDARDDAADLLTEA"
BASE COUNT          741 a         1187 c         1253 g          670 t
ORIGIN      
        1 gaggtgaagg cgaagaaata ggggaacagc ccgatcaggt tgccgagcag gatgaaggag
       61 aaaatggtga agaccagggg gaagaagcgg agaccctcct cgccgatggt gtccacacac
      121 atattacgga caaattcata aagcagctcg accagggcct gcatgcggcc cggcaccagg
      181 gcgcgggcct tcagcccgaa cacgaagagc aggacgatga cgatggccgc gccgagcatg
      241 gcctcgttgg aattggtgaa attgatggca cggccgagcg ggcccaggcc ttgggtcagc
      301 tcgaattgtc ccagcgcgtc gatcgagggt gccgtcatct gtcccgtcca accacctgtc
      361 tatggcgcgt cgccgcgccc gttattcaac agcgccttgc ggcaccctat tccttgccga
      421 acgcccgcac cagattgcgg atgccggcag ccattccgac cgggaccatg acaatcatca
      481 gccaggggct cgtatggaag agcttatcca gcccccagcc gatcaccacg gcgatgacca
      541 tcgcggccac catttccacg ccgaggcgca tggccagctc aatggcccgg cgcgctgatc
      601 cggcctgctt ggccgccgat tcgcgtgccg gcccctgggc cgcgtcctct gccgcctgca
      661 gccgctgctc aaacgccttc ttatcctggc cttcgctcat gcacctgttt ccacagcctt
      721 gcggccgttt cagacgatgg cgcggttgct acctatgccc ccctcccctg tcaagaatag
      781 gcggcattat aatgttacag ccgcttcggc cggaacccga gtcctatatg aagggggtgc
      841 tgttgacgcg gttacggaga agactccact tatgatgcat agctgaatcc gaggacccgc
      901 cttgcccgtg gaaatgccgc gcgaactgcc gctggaccag atattgctcg gtgatgccgg
      961 gacaatgctg cgcatgctgc ctgacgcctc ggtgaactgc atcttcgccg acccgcctta
     1021 taacctgcaa ttgcgcggcg agctgcgccg gccggatgac agcctggtcg acggggtgga
     1081 tgaagattgg gacaggttta ccgattttgc cgcctatgat gcgtttaccc gcgactggct
     1141 gggggaatgc caccgcatcc tgcaaaaaga tggaaccatc tgggtcatcg gctcctacca
     1201 caatattttc cgcatcggcg cgatgatgca ggatctgggg ttctggatcc tgaacgacgt
     1261 gatctggcgc aaatccaacc cgatgcctaa tttccgcggc cggcgtttta ccaatgcgca
     1321 tgagacgatg atctgggccg ccaagagcca gacgagccgg tacaagttca attaccaggc
     1381 gatgaagacg ctcaatgacg acgtgcagat gcgctcggac tggaccttgc cgctctgcac
     1441 cggggcggaa cggctcaaga ataatcacgg gttgaagttg catccgacgc agaagccgga
     1501 ggctttgctg caccgcgtca tcatggcctc gacctcaccg ggggatgtga tcgtcgaccc
     1561 gttcctcggc actggcacca cggcggccgt ggcgaagcgg ctgcaccggc atttcatcgg
     1621 catcgagcgc cacccggcct atgtggaagc ggcctggggg cggctgaagg ccgaggcgcg
     1681 cgcgtccagg accgccgtgg tggcgccgcc ttcagggcgc gaggcgccgc gcatcgcgtt
     1741 cggcagtttc gtggagcgcg gcatattgcc gccgggcacg caggtgatgg acaagcagcg
     1801 ccgcgtcgcc gccgaggtga cggccgaggg cggactggtg tcagggccgc atcgcggctc
     1861 gatccatcag gtgggggccg cggtacagaa tgccccgagc tgcaatggct ggacattctg
     1921 gcatttcgag cggggcggcg ttttggttcc gctggatgtg ctgcgaaaag aaaatccgga
     1981 aggataagtc acggccttgc ggcgccgtgc cgtcagccgc gccaagacga acatgcgcct
     2041 tggcgattta gcctgacagg gccggcgcct ttactggtgg ctcgaaatct tggcctggct
     2101 gggcgggacg ttcgcgctgg tgctgctgac agcgccgacc gaagctacgg caacgaacat
     2161 cgcgagcatg gcatattcca gcaagctcac agcgcgtttg ttcaactgca gattcaagac
     2221 cttggtgata tgacgaacaa gcatcatccg cctccgttcc tagaaaatgg taacgcacgc
     2281 aaaatttcca caaacacgtt actactagtt taagtattcc ggacagagat ggcgaccctt
     2341 cctcaagcgt ttgtgaggtc acgtttccgt taacaggccg gacagcctgt taagttttaa
     2401 agctcgctgg acacacggtt gaaggtgagc gcgacgtcct tgccgagcgt ggcgaggcca
     2461 ttgatgatga ccagcgccac gagcgcggca atcaacgcat attcgacgga cgtcaccgcg
     2521 cggcggtcga gtttcaaaca atgcagctgc gccatgcacc aagccaacat atcctgtctc
     2581 cttttctggc ggcgcaggcg ctattgccag ccgcgaacag gatatgctcc taccgatatt
     2641 tgccgccggc acaatcgcgc caaagggcca ttttggcagg tctcaagcgc tcgtgacgtc
     2701 acaaagccgt caacccgtca cgcctccgtg agaagatccg cggcatcatc acgcgcgtcg
     2761 cccaccgcca cacagcgtag ctgcgccggg ggcacgccga gggtttccgc cgtgacgtag
     2821 accaggtcca gcaggtcctg cgggccggcg gcatagatgt cggcgcccgg gagcttttcc
     2881 agctcggcct gcagggcggt gccggcattg gcgggtatca gcgccacggt gagttgcggc
     2941 agggcgccgc gcagggtggc aaggctgcgc tcaaggaagg gcagatcggt gcgcgcggcc
     3001 tcgatgacgc aatgcatgcg ggtgcggtcg cgcaacgcgg caaggtgacg cagcatggcg
     3061 agcagcggcg caagccctgc cccggcgcca acgaagcagc gcgggcgggg gcttttctcg
     3121 tccagggtga atttgccgag cgggccgcgc aattgcagcg tgatgccgcg cttggccacg
     3181 gtcagccacg tggcaagcgg ctcgtcaggc gccggggcaa tcaggaattc gagcacaccc
     3241 tcctcgttgg gggcgttggc catggccagg cgctgccata gatcggtgcc gggcaggcgc
     3301 agctccatga actggccggc atggaaatcg gcctcctggc cgaattcgcc ttcccgcagc
     3361 aggtggacgg agagcgtcgt ccaaccttca ggggcatggg tgagctcttc cagtgtggcg
     3421 tggcgctcgg gcacgtggcg gcggccgatc tggtcatcgc ggcagggcag cgccaccacc
     3481 agatcctcga tcgggcggca gcggcaaagc agcacgccgc cggggccggg cggcaagggc
     3541 gcctcgtgcg gggcaagctc ataggcaccg gagagcacat gggcgcggca ggtgccgcag
     3601 cgcccatggc ggcatacgca aggcagatag aagccagcct cctccgccgc atccagcaca
     3661 gtggtggagt cggggcatgc gaatgtgagg cgtatgtcat cacgcgtaac cgcgacgatg
     3721 tctggcataa gcgtccctgc gatgagtggg cgattggatt gccctggcac ttgagaaagg
     3781 tcaaggccgc gcggtgcagg ccagcccgcc gcggcatgtt ccttgccacc gacgaacgga
     3841 tcacgatttc g
//
LOCUS       DASQCV010000384         2875 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_747298, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000384 DASQCV010000000
VERSION     DASQCV010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2875
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_747298"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2104
                     /gene="rnr"
                     /locus_tag="VEQ16_05830"
     CDS             <1..2104
                     /gene="rnr"
                     /locus_tag="VEQ16_05830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008997 - ribonuclease R activity
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HYP63384.1"
                     /translation="EDKKALRGIMKSLEASGDAERAGRKIYAEAGHLPENALVEVTGI
                     DRNGDAIAKPVVWEGPGRAPVIFMQPEAKGQAALAPGAKVLARLRRIGGDKYEGRTLK
                     RVTGHTGSIVGLFHGTAEGGRIEPTDRRQKTEWIVPGSESDGALEGEIVRAEPLPGKP
                     FGPRLARVTERLGSMNDARSVSLIAIAQHGIPMEFPDAALMEAEKAKPVPLGKRTDLR
                     EVPLITIDGHDARDFDDAVFAEPVEHGYRLIVAIADVAHYVKPDSALDRAARQRGNSC
                     YFPDRVVPMLPEALSNGWCSLKPGEDRGCMFVEMFIDVHGNKQSHKFGRGLMRSAARK
                     TYEQIQAEFEESPAEYEHLFAAYTALAEARHRRGTLDLDLPERKVVLGEDGQVQSVAP
                     RPRLPSHKLIEEFMILANVCAAEELERLKQPCMYRVHAPPSPEKLDNLRSFLHTLDIS
                     LKAGDQLHPRDLDRILKLVEGTPSAALVNETMLRSQSQAEYSEENIGHFGLALARYAH
                     FTSPIRRYADLLVHRALITGLKLGRDGLPPEDLAAFPDIAEQITATERRATLAERDSS
                     DRYLALFLQHRIGELFQGRVSGVTKFGLFVTLNDSGASGFLGMANLPDDYWGCDEATQ
                     SLSGRRSRATFTLAQPLEVRLEEAKPVTGGLLFSLSGVPAGPAGRGAARGKPKVKVPG
                     KAPGKGKAKSMMKQKRRR"
     gene            2101..>2875
                     /locus_tag="VEQ16_05835"
     CDS             2101..>2875
                     /locus_tag="VEQ16_05835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S41"
                     /protein_id="HYP63385.1"
                     /translation="MTRSIVIFVLCLVLQGGLFSRADAATGNFNAAEAAQVWGAALAY
                     IVPRSLQNLTIPQMTLWGLNGLTALDPDLNTTMEEGQLRLYGPSTMILAVTAPADPND
                     AKGWANAAADVAVAAYNSSSALQRAGTQAIIANFFDELFNHFDPYSRYEPPEQAAQDQ
                     LMIMGLGGTGLTLAAQGQRVVVSDVAADSPAENAGIATGSIVQNVDGRAVWPGQVDML
                     NQGMSGITGSTISFTLVDPEDTANPPAPQQVTLTRGFIPP"
BASE COUNT          547 a          930 c          928 g          470 t
ORIGIN      
        1 agaggataag aaggcgctgc gcggaatcat gaagagcctg gaggcaagcg gcgatgccga
       61 acgtgccggg cgcaaaatct atgcggaggc gggccacctg ccggaaaacg ccctggtgga
      121 agtcaccggc atcgaccgta atggcgacgc catcgccaag ccggtggtgt gggaggggcc
      181 aggccgcgcg ccggtaatct tcatgcagcc cgaggcgaag ggccaagccg ccctggcgcc
      241 gggcgcgaag gttctggccc ggctgcggcg tattggcggc gacaaatatg aaggccgaac
      301 cctcaagcgc gtgaccggcc atacggggag cattgtcggg ctgttccatg gcacagcgga
      361 aggcggcagg attgaaccga ccgaccggcg gcagaaaacg gaatggatcg tccccggaag
      421 cgagagcgac ggcgcgctgg aaggcgagat tgtgcgcgcc gagccactac ccggcaagcc
      481 gtttgggccg cgcctggcac gtgtcacgga acggctcggt tcgatgaatg atgcacgctc
      541 ggtcagcctc atcgccatcg cccagcacgg tattccgatg gagtttcccg acgccgcgct
      601 gatggaggcg gaaaaggcca agcccgtgcc ccttggcaag cgcacagatc tgcgcgaggt
      661 gccgctcatc accatcgacg gccatgacgc gcgcgatttc gacgacgccg tattcgccga
      721 gccggtggag cacggctacc gcctcatcgt cgccattgcc gacgtggcgc attacgtgaa
      781 accggactcc gccctcgacc gcgcggcaag gcagcgcggc aatagctgtt atttccccga
      841 ccgcgtggtg ccgatgctgc ccgaggccct gtccaatggc tggtgctcgc tcaagccggg
      901 cgaggatcgc ggctgcatgt tcgtcgagat gttcatcgac gtgcacggca acaaacagtc
      961 acataaattc gggcgcgggc tgatgcgctc cgccgcgcgc aagacctatg agcaaatcca
     1021 ggcggaattc gaggaaagcc cggccgagta cgagcatctc ttcgccgcct ataccgcttt
     1081 ggccgaggca agacacaggc gtggcacgct ggacctcgat ttgccggagc gcaaagtggt
     1141 gctgggggag gatgggcagg tgcagagcgt ggctccgcgt ccacgtttgc ccagccataa
     1201 gttgatcgag gaattcatga tcctcgccaa tgtctgcgcg gcggaggagc tggaacggct
     1261 gaaacagccc tgcatgtacc gcgtgcatgc ccccccgagc ccggagaagc tcgataatct
     1321 gcgcagcttc ctgcatacac tggacatctc gctgaaagcc ggcgaccagc tgcacccgcg
     1381 cgacctcgac cgcatcctca agctggtgga aggtacgccg agcgccgccc tggtgaacga
     1441 aaccatgctg cggtcgcagt cccaggccga atattcggag gaaaatatcg gacatttcgg
     1501 ccttgctttg gcccgctatg cccatttcac ctcgcccatc cgccgctatg ccgaccttct
     1561 ggtgcaccgc gccctcatca ccgggctgaa actggggcga gacgggctcc cgcccgagga
     1621 cctggccgcc ttccccgata tcgccgagca gattaccgcc accgagcgcc gcgccaccct
     1681 ggccgagcgc gattcgtccg accgttacct cgcattgttc ctccaacatc gcattggaga
     1741 gttgttccag ggccgggtat cgggggtcac gaagtttggt ctattcgtca cccttaacga
     1801 cagcggggcg agtgggtttc tgggaatggc gaatttgcct gatgattact ggggctgtga
     1861 cgaggctacc cagagtctgt ccggccgccg ttcgcgggcg accttcaccc tcgcccagcc
     1921 gctggaagtg cggctggagg aagccaaacc cgtaacgggc gggctgctgt tcagcctgag
     1981 tggcgttccc gccggtccgg ccgggcgtgg cgcggccagg ggcaagccca aggtgaaggt
     2041 tccgggcaag gcgcccggca agggcaaggc caaatccatg atgaaacaga agcggcgcag
     2101 gtgacgcgca gcatcgtcat tttcgtactt tgcctcgtgc tgcagggcgg cctgttcagc
     2161 cgcgccgatg ccgccacggg caatttcaat gccgccgaag ccgcccaggt atggggcgcg
     2221 gcgcttgcct atattgtccc tcgctctttg cagaacctga ccatcccgca aatgacgctg
     2281 tggggcctga acgggctcac cgcgctcgac cccgacctca acaccacgat ggaagaaggg
     2341 cagctgcgcc tttacgggcc tagcacgatg attttggccg tgaccgcgcc cgccgacccc
     2401 aacgacgcaa aaggctgggc caatgcggcg gcggatgtgg cggtggccgc ctataacagc
     2461 tcgtccgctt tgcagagagc cggcacacag gccatcatcg ccaatttctt cgatgagctt
     2521 ttcaaccatt tcgaccctta ttcccgctat gagcccccgg aacaggcggc gcaggaccag
     2581 ctgatgatca tggggctggg cggcacgggg ctgacactcg ccgcgcaggg gcagcgcgtg
     2641 gtcgtgtcgg atgtcgccgc cgatagcccg gccgagaatg ccggcatcgc cacgggcagc
     2701 atcgtgcaga atgtcgacgg ccgtgccgtc tggccaggtc aggtcgacat gctgaatcaa
     2761 ggcatgagcg gcattaccgg cagcaccatc agcttcacgc tcgtggaccc ggaagacacc
     2821 gccaacccgc ccgccccgca acaagtgaca ctgacccgcg gtttcatccc gcccc
//
LOCUS       DASQCV010000385         1549 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2904059, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000385 DASQCV010000000
VERSION     DASQCV010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2904059"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..478
                     /locus_tag="VEQ16_05840"
     CDS             <1..478
                     /locus_tag="VEQ16_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019645596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYP63386.1"
                     /translation="GAWLQANNVQIIFALPGMVIATIFVTFPFVAREVIPLVQEQGNE
                     EEEAAVTLGASFWQIFWRISLPKIRWGLLYGVLLCNARAMGEFGAVSVVSGKVFGSTD
                     TLPLAVESLYGSYEVQAAFAVASLLAMLALVTLAAKTGLEFLLRDELNAAKRKRAA"
     gene            478..>1549
                     /gene="cysA"
                     /locus_tag="VEQ16_05845"
     CDS             478..>1549
                     /gene="cysA"
                     /locus_tag="VEQ16_05845"
                     /EC_number="7.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014188239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter ATP-binding protein"
                     /protein_id="HYP63387.1"
                     /translation="MSTEINIANVSRSFNNHTVLDRVTLNVREGELLALLGPSGSGKT
                     TLLRLIAGLDQPDTGSIAIGGIEATKAHPSARGVGFVFQHYALFRHMNVFENIAFPLR
                     IRKTPKTDVNVKVTELLKLIQLETLAGRYPAQLSGGQRQRVALARALASQPRVLLLDE
                     PFGALDAVVRRDLRRWLRQLHEEMHITTIFVTHDQEEAFDLADRIVIMNGGQICQEGA
                     PIDIYQQPSNVFVHEFLGESNHITGIAKGGIIFADAGFAVAEAAAEDGPVDAYIRPHH
                     AALRRRAGNGNSHGGWVINRIATTGAHARISVGNGEVTLEAAMTVDALLAANLANDVA
                     VDVIFTGGTVFPKGSGQPVKLHA"
BASE COUNT          268 a          477 c          503 g          301 t
ORIGIN      
        1 cggtgcctgg ctgcaggcga acaacgtcca gatcatcttc gcgctgcccg gtatggtcat
       61 cgccaccatc ttcgtcacct tccccttcgt ggcgcgcgag gtgattccgc tggtgcagga
      121 gcagggcaat gaggaggaag aagcggcggt gacgctgggc gccagtttct ggcagatttt
      181 ctggcgcata tccttgccga aaatccgctg gggcctgctc tatggcgtac tgctgtgcaa
      241 tgcccgcgcc atgggcgagt tcggcgccgt ctccgtcgtg tccgggaaag tgttcggctc
      301 gaccgatacg ctgccgctcg cggtggaatc gctttacgga tcttacgagg tgcaggccgc
      361 cttcgccgtg gcctcgctgc tcgccatgct ggcgctggtc acgctggcgg ccaagacggg
      421 gctggaattt ttgctccgtg atgaactgaa tgctgcgaaa cggaaaaggg ccgcctgatg
      481 tccactgaaa tcaacatcgc caatgtctcg cgcagcttca acaatcatac ggtgctcgac
      541 cgcgtgaccc tcaatgtgcg cgagggcgag ctgctggcgc tgctggggcc gtccggctcg
      601 ggcaagacca ctttgctgcg cctcatcgcc gggctcgacc agccggatac gggcagcatc
      661 gccattggcg gcatcgaggc gacgaaagcg catccttccg cgcgcggcgt cggcttcgtg
      721 ttccagcatt atgccttgtt ccggcatatg aacgtgttcg agaatatcgc gtttccgctc
      781 cgcatccgta agacaccgaa gacggacgtg aatgtgaagg tgacggagct tttgaagctc
      841 atccagctgg agacgctggc cgggcgctac ccggcgcagc tctcgggcgg gcagcgccag
      901 cgcgtggcct tggcccgcgc gctcgccagc cagccgcgcg tgctgctgct ggacgagccg
      961 ttcggcgcgc tggatgcggt ggtgcgccgc gacctccgcc gttggctgcg ccagctgcat
     1021 gaggagatgc atatcaccac catcttcgtc acccacgacc aggaagaggc gttcgatctc
     1081 gccgaccgca tcgtcatcat gaatggcggc cagatctgcc aggaaggcgc gccgatcgat
     1141 atctaccagc agccttccaa tgtgttcgtc catgagtttc ttggcgagag caaccatatt
     1201 accggcatcg ccaaaggcgg catcattttc gctgacgcgg gctttgccgt tgccgaggca
     1261 gcggcggaag acgggcccgt ggatgcctat atccgccctc accatgccgc gctgcgccga
     1321 cgcgccggca atggcaacag ccatggcggc tgggtgatca accgcatcgc caccacgggg
     1381 gcgcatgcac gcatcagcgt gggcaatggc gaggtgacac tggaagccgc gatgacggtg
     1441 gatgcgctgc tggccgccaa cctcgcaaat gatgtggctg tggatgtgat ttttacgggc
     1501 ggtactgtat ttccgaaagg cagcgggcag ccggtaaagt tgcatgcgt
//
LOCUS       DASQCV010000386         2791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_250357, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000386 DASQCV010000000
VERSION     DASQCV010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250357"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1124)
                     /locus_tag="VEQ16_05850"
     CDS             complement(<1..1124)
                     /locus_tag="VEQ16_05850"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HYP63388.1"
                     /translation="MSLLWLLLVPAIGGLLAWAAGARHPDWPRWIALATLTIDLLIAL
                     ALIGPAMSSGQTAWIASLDRPWIPQLGISFELDLDGLSLVLILLTIVLSLISVVISWT
                     EITDRVGLFHANLLWTTTGVIGVFLALDLFLFFFFWELMLVPMYFLIALWGHEDRFYA
                     AIKFVIFTQGSSLIMLVAILMLVFVHQQAAGHFTFNYLTLLGTKLNPAMEFWLMLGFF
                     IAFAVKLPAVPFHTWLPDAHTEAPTAGSVLLAGILLKTGAYGLLRFVVPLFPDAAHEF
                     APIAMALGVISILYGALLAFGQNDMKRLVAYSSVSHMGFVLLGIFAWNTLALQGVVIQ
                     MLAHGISTGALFILVGALQERIHTRDMRLMGGLWGVIPRLS"
     gene            complement(1121..>2791)
                     /gene="nuoL"
                     /locus_tag="VEQ16_05855"
     CDS             complement(1121..>2791)
                     /gene="nuoL"
                     /locus_tag="VEQ16_05855"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HYP63389.1"
                     /translation="YQQSLWHWLDVGGVSVQIGLRLDPLSLVMMLVITGVGFLIHLFA
                     TEFMEGEEGYGRFFAHLNLFVAAMLLLVLADDFLVLYTGWEGVGLCSYLLVGFWWRDP
                     ANGLAARKAFIVTRIGDTAFLIGLLLIASQLGTLNIAGAMKNAAQSWQVGSPVATLAA
                     FLILGGAVGKSAQLPLQTWLPDAMAGPTPVSALIHAATMVTAGVYLIARTHPLFLLAP
                     EAELTVGIIGGATLLLAGFSALAQNDIKRILAYSTMSQIGYMFLALGVGAWNAALFHL
                     MTHAFFKALLFLSAGAVTMRLHHEQNIFKMGGLARRLPAAFWSFLIGSAALAALPLVT
                     AGFYSKEAILSGAWAGGTSGRVLWVAGVLGAFMTGLYIFRAVFIAFFGEAHTEVSGRY
                     GWRVILPLTVLSVLSLVGGLIELPPAFGHVTLLSNLLAPVLPPTRGVAGVTPLLLASL
                     AALLGITLAALLYWRPVQAPAETPLWRFWHAAAGFDWLYDRVLVRTVLWAARVNGDDF
                     IDSLYDFIAWVTQAIHREVRRTQNGHVRFYTAGLAIGSVSLIAIAVLR"
BASE COUNT          645 a          809 c          942 g          395 t
ORIGIN      
        1 gacaggcgcg ggatgacgcc ccatagcccg cccatgagcc gcatgtcgcg cgtgtggatg
       61 cgctcctgca acgcgccgac caggatgaag agcgcgccgg tgctgatgcc gtgcgccagc
      121 atttgtatga ccacgccctg caaggcgagc gtgttccagg cgaatatacc gagcagtacg
      181 aagcccatat ggctgacgct gctataggca actaggcgct tcatgtcgtt ctggccgaac
      241 gcgagcagcg caccatagag aatgctgatg acgccgaggg ccatcgcgat tggggcgaat
      301 tcatgggcgg cgtcggggaa cagtggcacg acgaagcgga gcaggccgta ggcgccggtc
      361 ttcagcaaga taccggcgag cagcacggag cccgcggttg gtgcctcggt atgggcatcc
      421 ggcagccatg tatggaatgg cacggccggc agcttgaccg cgaaggcgat gaaaaacccg
      481 agcatcagcc agaattccat ggcggggttc aatttggtgc cgagcaacgt aaggtaattg
      541 aaggtgaaat ggccagccgc ctgctggtgc acgaagacga gcatgaggat ggcgaccagc
      601 atgatgaggc tgctgccctg ggtgaagatg acgaacttga tcgcggcata gaagcgatcc
      661 tcatggcccc atagcgcgat gaggaaatac atcggcacca gcatcaattc ccagaagaag
      721 aagaagagga acaaatcgag cgcgaggaac acgccgatga cgccggtggt ggtccagagc
      781 aggttggcgt ggaacagtcc aacccggtcg gtgatctcgg tccaggagat caccaccgaa
      841 ataaggctga gcacgatggt gagcaggatg agaaccaggc tcagcccgtc gagatcgagc
      901 tcgaaggaga tgccgagctg cgggatccag gggcggtcga ggctcgcgat ccaggcggtc
      961 tggccggacg acatggcggg gccgatgagg gccagagcga tgaggaggtc gatggtgagc
     1021 gtggcgagcg cgatccagcg tggccaatcc ggatgccgcg cgcccgccgc ccaggcgaga
     1081 aggccgccga tcgccgggac caggaggagc cagagaaggc tcatcgcagc accgcgatgg
     1141 cgatgaggga aacagagccg atggcaaggc cggccgtata gaagcggaca tgtccgtttt
     1201 gagtccggcg cacttcccgg tggatggcct gtgtcaccca ggctatgaag tcatagagac
     1261 tgtcgatgaa atcatcgcca ttgacccgtg ccgcccacag caccgtgcgg accaacacgc
     1321 gatcataaag ccagtcaaaa ccggcggcgg cgtgccagaa gcgccagagc ggcgtctcgg
     1381 ctggcgcctg cacggggcgc caatagagca aagccgcgag ggtgatgccg agaagggccg
     1441 cgagacttgc aagcaggagc ggtgtcacgc cggcaacccc cctggttggg ggcagcaccg
     1501 gggcaagcag gttcgagagc aatgtgacgt gcccaaaggc aggcggcaat tcgatcagcc
     1561 cgcccaccaa tgagaggacg gacagcacgg tgagcggcag gatgacgcgc cagccataac
     1621 gtccgctgac ttccgtatgt gcctcgccga aaaaggcaat gaacacggcg cgaaaaatgt
     1681 agagcccggt catgaaggcg ccaagcacgc ccgcaaccca cagcacgcgc ccgctggttc
     1741 cgcccgccca ggcaccggat aaaatagctt ccttgctgta aaaccctgcc gtgaccagcg
     1801 gcaaggcggc aagtgcggcg ctgccgatga ggaagctcca gaaggcagcc ggcaggcgcc
     1861 gcgcgaggcc acccattttg aaaatattct gctcgtgatg gagccgcatg gtgacggcgc
     1921 cagcggagag gaacagcagc gccttgaaga aagcatgcgt catcagatga aacagcgccg
     1981 cgttccaggc gccgacacca agggcgagga acatatagcc gatctggctc atggtcgaat
     2041 aagcgaggat gcgcttgatg tcattctgcg cgagcgcgct gaagccggca agcagcaatg
     2101 tcgccccgcc gatgatgccg accgttagtt ccgcttctgg tgcgagcagg aacagcggat
     2161 gggtgcgggc gatgaggtag acgcctgcgg tcaccatcgt cgccgcatga atgagcgcgc
     2221 tcactggtgt cgggccggcc atcgcgtcgg gcagccaggt ctgcaatggc aattgtgccg
     2281 atttgccgac cgcgccgccg aggatgagga aggccgccag cgttgcgaca ggagagccga
     2341 cttgccagct ctgcgcggca ttcttcatgg cacccgcgat gttcagcgta ccgagctggc
     2401 tggcgatcag cagcaggccg ataagaaacg cggtatcgcc gatgcgcgtc acgatgaaag
     2461 ccttgcgcgc ggcgaggccg ttggcggggt cgcgccacca gaacccgacc agcaggtagg
     2521 agcaaagccc gacgccttcc cagccggtat agaggacgag gaaatcatcc gccagcacca
     2581 gcaggagcat ggcggcgacg aacagattga gatgggcgaa gaacctccca tagccttcct
     2641 cgccttccat gaattcggtg gcgaacagat ggatcaggaa gccgacgccg gtgatcacca
     2701 gcatcatcac aagagaaagc ggatcgaggc gcaggccgat ctgcacagag accccgccga
     2761 catcaagcca gtgccacaga ctttgctggt a
//
LOCUS       DASQCV010000387         1873 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2242064, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000387 DASQCV010000000
VERSION     DASQCV010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1873
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2242064"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1386)
                     /locus_tag="VEQ16_05860"
     CDS             complement(<1..1386)
                     /locus_tag="VEQ16_05860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63390.1"
                     /translation="MLNSLNRRQWFRGGGLLATAPALFSWPQRASAAVPATAGKLRLD
                     PDIYQSIGVHPVINCRGTLTVISGSLELPEVRAAVDNGGLHHVALDELMEAVAGRLAE
                     ITGAEWALVSAGCAAGIAHTTAACVTGGNPDLHVRIPDLTGFAKDEVVIPKASRNEYD
                     QAIRSVGVRIIEVGDAAEYEAALGPKVAMVYIMSGNRMENGPLSYDAVYSIAKKKNIP
                     VFTDAAAEMLTVPNVYLQHGSTFVGYSGGKCLRGPQCSGLILGRKDLLQAAWVASAPH
                     HGHGRTMKIGKEEILGLLAAVEMWVQRDHQKEDEMWTAWMQTIADRVTKIDGVSATAR
                     QPRGLNNHSPGLSINWDPAKLGITGEEVSNILWSTEPRIALGGGGGGGRRGASNETGI
                     SITAYMMRPDDVKIVADRIHEVLSAKRADWKPETPKTPAADLSGRWDVHIQFAAGTAD
                     HIFHVKQQGNQL"
BASE COUNT          309 a          624 c          593 g          347 t
ORIGIN      
        1 aagctggttg ccctgctgtt tcacgtgaaa tatgtgatcg gccgtgcccg ccgcaaactg
       61 gatatgcacg tcccagcgcc ccgataagtc cgccgccggc gtcttcggcg tctccggctt
      121 ccaatccgcc cgtttggcgg aaaggacctc gtgaatgcgg tcggcgacga tcttcacatc
      181 gtccggccgc atcatgtacg cggtgatcga aatgcccgtc tcgttcgagg cgccgcgccg
      241 ccccccgccg cccccgcctc cgagtgcgat gcgcggctct gtgctccaga ggatgttcga
      301 aacttcctcg cccgtgattc cgagcttcgc agggtcccag ttgatggaaa ggcccgggct
      361 gtgattgttc agaccgcgcg gctgccgcgc tgtcgcactg acgccgtcga ttttggtgac
      421 ccggtcggcg atggtctgca tccacgcggt ccacatctcg tcttccttct ggtgatcgcg
      481 ctgcacccac atctcgaccg cggccagcag tcccaggatc tcttccttgc cgatcttcat
      541 cgtgcgaccg tggccgtgat gtggcgcgct cgctacccac gcggcctgca gcaggtcctt
      601 gcgccccagg atcagccccg aacactgcgg cccgcgcaag catttgccgc cgctgtaccc
      661 cacgaaagtc gagccgtgct gcaaatacac gttcggcacc gtcagcatct ctgctgcggc
      721 atcggtgaac accggaatat tcttcttttt ggcgatgctg tagacggcgt cgtatgagag
      781 cggcccgttc tccatgcgat tgccgctcat gatgtacacc atcgccacct tcggcccgag
      841 cgccgcctcg tactccgcag catcgccgac ttcgatgatg cgaacgccca ccgagcggat
      901 agcctggtcg tattcgttgc gcgacgcctt cgggatgacc acttcatcct tggcgaagcc
      961 ggtgagatcg ggaatccgca cgtgcaggtc gggattgccg cctgttacgc aggcggccgt
     1021 ggtatgggcg atgccggcgg cgcagcccgc cgaaaccagc gcccattcgg cgccggtaat
     1081 ctcggccagg cgccccgcca ccgcctccat cagttcgtcg agcgcgacgt gatgcagccc
     1141 gccgttgtcc accgccgccc gcacctccgg caattccagc gagccgctga tcacggtcaa
     1201 cgtcccacgg caattgatca ccgggtgcac tccgatggac tggtaaatat ccggatccaa
     1261 ccgcagcttg ccagccgttg cgggcaccgc ggcagatgcg cgctgcggcc agctgaacag
     1321 cgccggcgcc gtcgccagca ggccgcctcc ccgaaaccac tgccggcggt tcaaggaatt
     1381 cagcatgctc acctccagga gggaccgctt gatgatatcg cagccggcgg ccgccgcgag
     1441 atgacgcgtg gattacgatt cggtcatgcg gtccgcgcac gcggtcaccg aaaaactaac
     1501 gactttggca agcggaacgg cgtcgagttc acggcagcgg cctgaggtga ccgggggatt
     1561 acggttttgt catgccgcgg ccagggcctc gcagacgcga tataattgcc gcccgtaggg
     1621 gactcacggc ggcgtttgct tgcgctgcga tggcgttggc ggcacaaatg gcgcagagga
     1681 cattcaccct gccgaaggcg tcggtgacag tactgcgcgg gaaggtgagc ggagggcaga
     1741 agggtgcggg ttcggttcgg cgtgggttgg ctggtttacg cggcggctgc gcagggatgg
     1801 gggcagacca acacgcaggc ggtcgagaag ggccaaacgc tgtttcaggt gcattgcgcc
     1861 tactgccacg ggg
//
LOCUS       DASQCV010000388         3180 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_250895, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000388 DASQCV010000000
VERSION     DASQCV010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3180
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250895"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..667
                     /gene="tsaB"
                     /locus_tag="VEQ16_05865"
     CDS             <1..667
                     /gene="tsaB"
                     /locus_tag="VEQ16_05865"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: protein motif:HMM:TIGR03725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HYP63391.1"
                     /translation="DTALAACSAAVLDTEYGGIVASESLPMLRGHAEALLPLLQRVMH
                     QANLSFPDIDRIAVTTGPGSFTGLRVGIAAARGIALAADKPAVGLSTLSAYAAPHIAN
                     DERFPVVAAIDARHNHVYLQVFAPGGRLFTAPRLAPLREAVKAAAETSSCIAGSAAKL
                     VAAGLSADDAVPVTVDAGAAPDIAWVARMGAVVPEEQAPLRPQYLRAPDAQPQNAAQL
                     PRR"
     gene            664..1137
                     /locus_tag="VEQ16_05870"
     CDS             664..1137
                     /locus_tag="VEQ16_05870"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP63392.1"
                     /translation="MMGLVARLIGRAEPSLAEASERDAAAIAAIHAASFQRGWGEDEF
                     RSLLLDRNVVCHRAVMGRTLIGFILSRLVAGEAEILSVAIAPSWRGRGLSRPLLDLHL
                     RRLAGLGARTVFLEVDEKNAPAGRLYRKAGFYDVGRRQGYYEGRATALVLRRDLT"
     gene            1248..2603
                     /gene="miaB"
                     /locus_tag="VEQ16_05875"
     CDS             1248..2603
                     /gene="miaB"
                     /locus_tag="VEQ16_05875"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012552949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HYP63393.1"
                     /translation="MTGSRKLYVKSFGCQMNVYDSQRMADTLAPEGYVETGSAEDADL
                     MILNTCHIRKKAAEKVYSELGRIRVLKEAGAREGRCVTIAVAGCVAQAEGEVLAKRAP
                     YVDLVVGPQSYHRLPELIAAAHRKQGVVIDTEFPAEQKFDFLPDAAAPQGVVSYLSIQ
                     EGCDKFCSFCVVPYTRGAESSRPVAGVLAEARRMVALGAKEIAVLGQNVNAYHGEGPD
                     GSSWSLARLLAEMADIEGLERLRYTTSHPNDMADDLIAAHRDNEKLMPFLHLPVQSGS
                     DKILRAMNRKHTADEFRRIVGKLRDARADIAFSSDFIVGHPGETGADFEATMKLVRET
                     GFALAYSFNYSPRPGTPAAALGQLPDEVKNARLYELQAELRRQQDAFNAATVGLTTPV
                     LFTGRGRYEGQIAGRSLWLQPVVVAHGEELTGQVRHVKITSTNTNSIVGVLLPQEQIA
                     A"
     gene            2660..>3180
                     /locus_tag="VEQ16_05880"
     CDS             2660..>3180
                     /locus_tag="VEQ16_05880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HYP63394.1"
                     /translation="MTFGNNALLPLLLGDHDRHLARIEQKLGVRLACRGNRIAISGTA
                     EQVAAAEAALAALYRQLEHGDVIDGPKVDAVLRLTDPASEPRLPLSDLPAIRTRKGAV
                     GPRSAGQAAYMDLLARNEMVFALGPAGTGKTYLAVAQAVAMLQAGKVDRIVLSRPAVE
                     AGERLGFLPGDMK"
BASE COUNT          533 a         1026 c         1065 g          556 t
ORIGIN      
        1 tgatacggcg ctggcggcgt gttccgccgc cgtgctcgac accgagtatg ggggcatcgt
       61 cgcgagcgaa agcctgccga tgctgcgcgg ccacgccgag gcgttgctac cgctgttgca
      121 gcgcgtgatg catcaggcga acttgagctt ccctgacatc gaccgcatcg ccgtgacgac
      181 gggcccgggc agtttcacgg gacttcgggt cggcatcgcg gccgcgcgcg gcatcgcgct
      241 ggcggccgac aagccggccg tcggattgtc cacgctttcg gcctacgccg cgccgcacat
      301 agccaatgac gagagatttc cggtggtggc tgcgatcgat gcgcgtcaca accacgttta
      361 tctgcaagtg tttgcgcccg ggggccgttt gttcacagca ccgcggctgg cgcctttgcg
      421 cgaggcggtg aaggcggcgg ccgagacatc ctcctgcatt gccggctcgg cggcaaaact
      481 ggtcgctgcc ggcttatcgg ccgacgatgc ggtgccggtc acggtcgatg ccggcgctgc
      541 gccggatatc gcttgggtcg cccgcatggg cgcagtggtg ccggaagaac aggcgccgct
      601 gaggccacaa tatctgcgag caccggacgc gcagccgcaa aacgccgcgc aattgccgcg
      661 ccgatgatgg gcttggtcgc gcgtctgatc ggccgggccg agccaagctt ggctgaggcg
      721 agcgagcgcg atgccgccgc aatcgccgcg attcatgccg cgtcgtttca acgcggctgg
      781 ggcgaagatg agttccgcag cctcctgctc gaccgcaatg tggtctgcca ccgcgccgtg
      841 atgggccgta ccctcatcgg cttcatcctg tcgcggcttg tggcggggga agccgaaatc
      901 ctctcagtcg ccatcgctcc cagctggcgg ggccgcggat tgtcccgtcc gctcctcgac
      961 ttgcatctgc gccgcctggc cggactgggc gcccggacgg tctttctcga agtcgacgag
     1021 aagaacgcgc ccgcaggccg gctttaccgt aaggccggct tttacgatgt cggccgccgg
     1081 cagggctatt atgaaggcag ggccaccgcg ctggtgctgc gccgcgactt gacttgagga
     1141 cgttgggctg agggcggcgc ggctgacggt atggcccaaa aagcgatatg atggtgttac
     1201 acaaacccgc caccgtgagg cgaagagaag ggctcgattc gaccggaatg acaggttccc
     1261 gcaagctgta cgtgaaatcg tttggctgcc agatgaacgt ctacgattcg cagcgtatgg
     1321 cggacacgct cgcgccagag ggctatgtcg agaccggcag cgccgaagac gccgacctca
     1381 tgatcctcaa tacctgccac atccgcaaga aggcggcgga gaaggtctat tccgagctcg
     1441 gccgcattcg cgtcctcaag gaggcgggcg cccgcgaggg ccgttgcgtc accatcgcgg
     1501 tcgccggctg tgtggcgcag gcggaaggcg aggtgctggc caagcgcgcc ccgtatgtcg
     1561 atctcgtggt cgggccgcaa tcctatcacc gcctgccgga actcatcgcc gccgcccatc
     1621 gcaagcaggg cgtggtcatc gacacggaat ttccggcgga acaaaaattc gatttcctgc
     1681 ccgatgcggc ggcgccgcag ggcgtggtct cctacctctc catccaggaa ggctgcgata
     1741 aattctgctc cttctgcgtg gtgccctata cgcgcggcgc cgaaagctcg cggcccgtgg
     1801 ccggcgtgct ggccgaagcg cggcgcatgg tggcgctggg ggcgaaggag attgcggttc
     1861 tgggccagaa tgtgaacgcc tatcatggcg agggaccgga tggttccagc tggagcctcg
     1921 cccgcctgct ggcggaaatg gcggacatcg aagggctgga gcggctgcgc tacaccacct
     1981 cgcaccccaa cgacatggcg gatgatctca tcgccgcgca ccgcgataat gagaagctga
     2041 tgcccttcct acatttgccg gtgcaatcgg gctcggataa aatcctccgt gcaatgaacc
     2101 gcaagcatac ggctgatgag ttccggcgga ttgtcggcaa gctgcgcgac gcgcgggcgg
     2161 acatagcttt ctcctctgat ttcatcgtcg gccacccagg cgagaccggc gcggatttcg
     2221 aggcaacaat gaagctcgtg cgcgagaccg gcttcgcttt ggcctattcc ttcaactact
     2281 cgccgcgccc cggcacgccc gccgccgccc tgggccagtt gcccgacgag gtgaaaaatg
     2341 cccgcctcta cgagctgcag gccgaattgc gccgccagca ggatgcgttc aatgccgcga
     2401 ccgtagggct caccacgccg gtcctcttca ccgggcgcgg ccgttatgag gggcagattg
     2461 ccggacggtc gctctggctg cagcccgtcg tggttgcgca tggcgaagag ctgaccgggc
     2521 aggtgcgtca cgtgaaaatc accagcacta acaccaattc aatagtcggg gttcttttac
     2581 cacaggagca aattgccgct tgagccagat catcgcttcg tccttgtcca atccggtacc
     2641 gcagctgcgg tccctcacca tgaccttcgg caataatgcg ttattgcccc ttttgctcgg
     2701 cgatcacgac cggcatctgg caaggatcga gcagaagctc ggcgtcaggc tggcctgccg
     2761 gggcaaccgc atcgccatct ccggcacggc cgagcaggtg gcggcagccg aggcggcctt
     2821 ggccgcgctc taccggcaat tggaacatgg cgatgtgatt gacgggccga aggtggacgc
     2881 ggtgctgcgt ttgaccgacc cggcctccga gccgcgcctg ccgctctctg atcttcccgc
     2941 catccgcacc cgcaagggcg cggtcggccc gcgcagcgcc ggccaggcgg cctatatgga
     3001 tttgctggcc cgcaacgaga tggtgtttgc cctcggcccg gccggcaccg gcaagaccta
     3061 cctggcggtg gcgcaggccg tggcgatgct gcaggccgga aaggtggatc gcatcgtgct
     3121 gtcgcgcccg gccgtggaag cgggcgagcg gctgggattc ttgccgggcg acatgaaaga
//
LOCUS       DASQCV010000389         2566 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2739319, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000389 DASQCV010000000
VERSION     DASQCV010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2566
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2739319"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..211)
                     /locus_tag="VEQ16_05885"
     CDS             complement(<1..211)
                     /locus_tag="VEQ16_05885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HYP63395.1"
                     /translation="MASAYDFSFTTLKGESYPLAQHQGKPMLVVNTASKCGFTPQYAA
                     LQELTKKFPDVAIIGVPCNDFGNQEP"
     gene            240..1028
                     /gene="mazG"
                     /locus_tag="VEQ16_05890"
     CDS             240..1028
                     /gene="mazG"
                     /locus_tag="VEQ16_05890"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HYP63396.1"
                     /translation="MSTEPPIATLINVMAALRHPETGCPWDKAQDFATIAPYTIEEAY
                     EVRAAIESGEPQQLKDELGDLLFQVVYHARLAEERGWFNFNDVTEAITDKMIRRHPHV
                     FGDEAARSAAAHSATWEAQKAQERHARAETGVLAGVAPTLPALKRAQKLTARAARVKF
                     DWPNAGAVLDKLEEEAKELREELPAMEPARVRDELGDMLFVLANLARKLGQEAEDCLH
                     GANEKFIRRFSAIEAALAVQGRTPSESSLDEMDGLWNAAKKEGL"
     gene            1025..1618
                     /locus_tag="VEQ16_05895"
     CDS             1025..1618
                     /locus_tag="VEQ16_05895"
                     /EC_number="4.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HYP63397.1"
                     /translation="MKTLLAGYERFRNGYWREHEELYSSLARDGQSPPAMVIACADSR
                     VAPEMIFDCAPGEIFVVRNVSALVPPYAPDDNKHGTSAALEFAVTSLNVRSIVVMGHS
                     RCGGIRALMQPDGSHGDFIESWMEIAKSARQRVCDAPDAPADFDAKCFACEQEAIRVS
                     LSNLLTFPWIKERVQTGALTLSGIHFDVETGTLRQVQ"
     gene            complement(1628..2233)
                     /locus_tag="VEQ16_05900"
     CDS             complement(1628..2233)
                     /locus_tag="VEQ16_05900"
                     /inference="COORDINATES: protein motif:HMM:NF012659.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63398.1"
                     /translation="MSWLRKLALALCFCLAGGAAQAQMSHNLGSQPPGQFDFYVLTLS
                     WQPSYCADTHNPNAQECGGTPQGFGLHGLWPQDANGYPSYCSNIMPTGAELQDYGSLF
                     ASPGLISHEWQRHGTCSGLAPAAYFELIKKILSGVTIPDAYKQATGTSLDDDANIQQN
                     FQAANPSWPAGAVLVDHYNDGDLEDVEICFDKSGMAQACPQ"
BASE COUNT          504 a          784 c          786 g          492 t
ORIGIN      
        1 ccggctcctg gttgccgaaa tcattgcatg gcacgccgat gatggcgaca tccgggaatt
       61 ttttcgtcag ctcctgcagc gccgcatatt gcggtgtgaa accgcatttg ctggcggtgt
      121 tcaccaccag catgggcttg ccctggtgct gggctaatgg ataggactcc cccttaaggg
      181 tcgtaaacga aaaatcatag gcgctggcca tttttccccc cggaccttac attcgcgtca
      241 tgagcactga accaccgatt gccacgctaa tcaatgtgat ggccgccctg cgccatcccg
      301 aaacgggctg tccctgggac aaggcgcagg attttgccac catcgcgcct tataccatag
      361 aggaagccta tgaggtacgc gccgcgatag agagcggtga accgcagcaa ctcaaggatg
      421 agctgggcga tctactgttc caggtcgtct atcacgcccg gctggccgag gagcgcggct
      481 ggttcaattt caatgacgta accgaggcga tcacggacaa gatgatccgc cgccaccccc
      541 atgtgttcgg cgacgaggcg gcacgctcgg ccgccgctca tagcgccacc tgggaggcgc
      601 agaaagcgca ggagcgtcac gcccgcgccg aaaccggcgt gctggccggg gtggcgccaa
      661 ccctgcccgc cttgaagcgc gcgcaaaaac tcaccgcccg cgcagcccgc gtgaaattcg
      721 actggcccaa tgccggggcc gtgctcgata agctggaaga agaagccaag gagctgcgcg
      781 aagagctacc cgcgatggaa ccggcgcggg tgcgcgacga attgggcgac atgctgttcg
      841 tgctcgccaa tctcgcccgc aagctgggtc aggaggcgga agattgcctg catggcgcca
      901 acgaaaaatt tatccggcgc ttttcggcca tagaggccgc cttggccgtg caggggcgca
      961 cgccctctga gtccagcctg gacgagatgg atgggttgtg gaacgctgcc aagaaggagg
     1021 gcctatgaag acgctgctgg caggctatga acggttccgc aacggctatt ggcgcgagca
     1081 tgaggagctt tattccagcc tggcgcgcga cggccagtcc ccaccggcga tggtcatcgc
     1141 ctgcgcggat tcccgtgtcg cccccgagat gattttcgac tgcgcaccgg gcgagatttt
     1201 cgtcgtgcgc aacgtttccg ccctggtgcc gccttacgca ccggacgaca acaagcacgg
     1261 tacctcggcg gctctggaat tcgccgtgac gtcactgaat gtgcgcagca tcgtggtgat
     1321 gggccattca cgttgcggcg gcatacgcgc gctgatgcag cccgatggca gccatggcga
     1381 cttcatcgaa tcctggatgg aaatcgccaa atccgcccgc cagcgcgtat gcgatgcgcc
     1441 cgatgcaccg gcggatttcg acgcgaaatg ttttgcctgc gaacaggagg cgatccgcgt
     1501 gtcactgagc aatctgctga catttccctg gatcaaggag cgtgtgcaga caggagcgct
     1561 gacgctgtct gggattcatt ttgatgttga gacggggacg ttgcggcagg tgcagtgacg
     1621 gacgggctca ctgcgggcag gcctgggcca tgccgctctt gtcgaaacag atctccacgt
     1681 cctcaaggtc gccgtcatta taatggtcga ccagaacggc gccggccggc cagcttggat
     1741 tggcggcctg gaaattctgc tggatgttgg cgtcatcgtc caggctcgtg cccgtcgcct
     1801 gtttataggc atccggaatg gtcacgccac tcaggatctt cttgatgagt tcgaaataag
     1861 cggcgggagc gagcccggag caggtgccat gcctctgcca ttcgtgggag atcaagccag
     1921 ggctcgcgaa tagcgatcca taatcctgca gctcggcacc ggtgggcatg atgttggagc
     1981 agtaggacgg ataaccattt gcgtcctgcg gccacagccc atgcaggcca aagccctgcg
     2041 gcgtgccgcc gcattcctgc gcattggggt tatgggtatc ggcacaatag ctgggctgcc
     2101 agctgagggt cagaacatag aaatcgaact gccccggtgg ctgcgagccg agattgtggc
     2161 tcatctgcgc ctgcgcggcg ccaccggcca ggcaaaagca caaagccagg gcaagctttc
     2221 tcaaccagct catgtcgaac ctcctcatca cgcggcatgg ccatgcatgt tgcggcacag
     2281 agattatcag aaacagatct accggggcag aattgtgcga tcttataatg aaaccatcat
     2341 gatccgccgc gatggccctg gccttaaggg ccggactcat gccatgctcc gctcatggca
     2401 ctcctcccca atgtcgaccg catctccccg ccgcccggac atcgttccaa gctcatcacc
     2461 accggcctct tcgtgctcgg cgtgctcatc ctgctcgcca tcatcaaccc gttcgtgcag
     2521 gtcagctcgg gctatgtcgg ggtactgtcc aatttcggct cggtgc
//
LOCUS       DASQCV010000390         4287 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_916951, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000390 DASQCV010000000
VERSION     DASQCV010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4287
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_916951"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1096)
                     /locus_tag="VEQ16_05905"
     CDS             complement(<1..1096)
                     /locus_tag="VEQ16_05905"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HYP63399.1"
                     /translation="MAADWTVDQLIEEAQRATGLTDFGGNSFHEGLGVMLSDVRKDNE
                     RPPELLGRLKYGLVKALTDRLKVTDALAKRPELLTRKVEKPVFVFGIPRTGTTLLNNL
                     LAADPNRRSPLKWELDDPVPPPTSDELYTGPRALAALEMDRKMQAAAPSASKYYRGSA
                     IYPHECVWILAHDFRTLMWESAGKLPQYREWYFAADATPAYEYHKKFLQLHQADAPGI
                     WNLKMPSHILNIQTLLKIYPDARLVWTHRDPYSATGSLCSLISLGHMAYMGKVDNEWL
                     GWNYPWQAAEHARRGMAAVDALGRDRIIDVHYADMLRDPLGVMRKLYKQLDDELTPEA
                     EAAMQAWIDDNPQDKFGRHEYKLAQYGLTKE"
     gene            complement(1224..2255)
                     /locus_tag="VEQ16_05910"
     CDS             complement(1224..2255)
                     /locus_tag="VEQ16_05910"
                     /inference="COORDINATES: protein motif:HMM:NF016293.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 family protein"
                     /protein_id="HYP63400.1"
                     /translation="MQQIVAKGLEMYRAIENRLPRPSFAAVWRERAFKLAYLLGHIPQ
                     HQDLQRALETSFTSVSSHFLAPLRFKYLRVYLARKLSFSARRACMQTHYEFWRMIGAA
                     PRAQPLLSGQLPLWDRHGDGHVLSVELRPAGTTVAEGECALNFRVDGEVAAMLTFTIA
                     PSAVFGMPGARVLFVGGLQGRPGAREAIRLAAKLNGEIAPFATLLLAAQALAKAWGLD
                     GIVGIAASHQVSAMRHQAFAGARGAGAEPETCYDEFWRHARGIALAAQNGQPWGYAIP
                     VDPQESDAVPSGSHRARTRRRRMLRAALHQEMLAAALMAFAAPGPERLFAVPMQSEQI
                     EMCSGLVPA"
     gene            complement(2519..3421)
                     /locus_tag="VEQ16_05915"
     CDS             complement(2519..3421)
                     /locus_tag="VEQ16_05915"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYP63401.1"
                     /translation="MALAIGENGAPGTPRGIMTIDAEMSVPAATVQVVKFDISAPGEN
                     FVCRDIYWLDLAVTPRPANSRACFKDHWAPHRFEPLGRVFMAPPDEAMRMRGDSGSQV
                     SILCLLQKDIFRRWLGQELEWTDRRLEATLSVPSEEVQNLLLRLGQEARNPGFASHAY
                     SEAMAVQIAIELNRYYLALDKDNATGGLAGWRLRMIDERLREVRSPPTLTELATLCGL
                     SIRQLTRGFRASRECSIGDYIARTRIDNAKRLLASGESVKSIAFSMGFGSPSGFCYAF
                     RRATGHTPRQYRMQLTASSGTLPH"
     gene            3626..>4287
                     /locus_tag="VEQ16_05920"
     CDS             3626..>4287
                     /locus_tag="VEQ16_05920"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63402.1"
                     /translation="MSKGLFDLTGKVTLVTGGNSGIGFGFARGVAKQGGAVEIWGRSA
                     EKNAAAKAELEAFGGRVVTRQVDVSKEDQIIAGYEALIKEFGRIDCVFANSGGAAKVN
                     SLLDLTNEEYHDLINLNLHGAYYTLREGAKLMVKRAEAGEPGGSLVACGSLSMFMGLP
                     GKAHYAGSKAALGAIIRGMAVEFGKYAIRANIIAPGLISTGMTGDDQSPVAKFMASKT
                     PIP"
BASE COUNT          771 a         1240 c         1471 g          805 t
ORIGIN      
        1 tctctttggt caggccatat tgggccagct tatattcgtg gcggccgaac ttgtcctgcg
       61 ggttgtcgtc gatccaggcc tgcatggcgg cttccgcttc cggcgtcagc tcgtcgtcca
      121 attgcttgta gagcttgcgc atcaccccca acgggtcgcg cagcatgtcg gcataatgca
      181 cgtcgatgat acggtctcgc cccagcgcat ccaccgccgc catgccgcgg cgggcatgct
      241 cggcggcctg ccagggatag ttccagccga gccattcatt atccaccttg cccatgtaag
      301 ccatgtggcc gagggagatg aggctgcaga gcgagccggt ggcgctgtag gggtcgcgat
      361 gcgtccagac caggcgggca tcggggtaga ttttcagaag cgtctggatg ttgaggatgt
      421 gcgacggcat cttcaggttc cagatgccgg gggcatcggc ctgatgcagc tgcaaaaact
      481 tcttgtggta ttcgtaggcg ggcgtagcgt cggcggcgaa ataccattcg cgatattgcg
      541 gcagtttgcc ggcggattcc cacatcaggg tgcgaaagtc gtgggccaga atccagacgc
      601 attcatgcgg atagatggcg gagccgcggt aatatttgct ggcggaaggg gcggccgcct
      661 gcatcttgcg gtccatctcc agggcggcga gggcgcgcgg gccggtatag agctcatcgg
      721 aagtgggcgg cgggacgggg tcatccagct cccacttcag cggcgagcgg cggttggggt
      781 cggcggcgag gaggttgttg agcagcgtgg tgccggtgcg ggggatgccg aacacgaaga
      841 ccggcttttc caccttgcgg gtgagaagtt cggggcgctt ggccagagcg tctgtgacct
      901 tcaggcggtc cgtgagagct ttgaccaggc cgtatttcag gcggccgagc agttcgggcg
      961 ggcgctcatt gtccttgcgg acgtcggaaa gcatgacgcc gaggccttcg tgaaagctgt
     1021 tgccgccgaa atcggtcagg cctgtggcgc gctgcgcctc ctcgatgagc tggtctacgg
     1081 tccagtccgc tgccatgctg gcgttctccc gtgatttttg ttgatgggcg gcagtcttgg
     1141 cgcggatggg aggcggctgc aaccgaggct tatggctggc attggccaga ctatccaagc
     1201 cgggccggat tatgaactgc tgattatgcc ggcaccaggc cgctgcacat ctcaatctgc
     1261 tcgctctgca tgggcaccgc gaacagacgc tcagggccag gtgctgcgaa agccatgagc
     1321 gcggcggcca gcatctcctg gtgcaaggcc gcacgcagca tccggcggcg gcgcgtacgt
     1381 gcccggtgcg agccagatgg cactgcatcg ctctcctgcg gatcgaccgg aatggcatag
     1441 ccccatggct gcccgttttg cgccgccagc gctattccgc gcgcatggcg ccagaattcg
     1501 tcatagcatg tttcgggctc ggcaccggcg ccgcgcgccc cggcaaaggc ttggtgccgc
     1561 atggctgaga cttggtggga cgcggcgata ccaacgatgc catccagccc ccaggccttg
     1621 gccagcgcct gggccgccag cagcaatgtg gcgaaggggg cgatttcgcc attgagcttc
     1681 gccgccagtc gtatggcctc gcgcgcgcca ggccggccct gcaacccgcc aacaaagagc
     1741 acgcgcgcac ctggcatgcc gaacacggcg ctgggggcga tggtgaaggt gagcatggcg
     1801 gcgacctcgc catcgacccg gaaattcagc gcgcattcgc cttccgcgac ggtcgtgcca
     1861 gcggggcgca gctccactga aagcacgtgg ccgtctccgt gccggtccca caatggaagc
     1921 tggccggaga gcaagggctg ggcgcggggc gctgccccaa tcatccgcca gaactcataa
     1981 tgggtctgca tgcaggcccg gcgcgctgaa aaactgagtt ttcgggcaag atagacgcga
     2041 agatatttga agcgcagcgg ggcgagaaaa tgcgagctga cggatgtgaa gctcgtctcg
     2101 agcgcgcgct ggaggtcttg gtgctgcgga atatgcccga gcagataggc cagcttaaag
     2161 gcacgctccc gccacacggc ggcaaagcta gggcgcggaa gccgattttc aatggcacga
     2221 tacatttcga ggcccttagc aacaatttgt tgcattttct cggcgttgcc taaggggcgc
     2281 gtggtgcagc gtcaagggac cttaacatca caaaatcgct atttttatat gacattcctg
     2341 agacgaaatt taggtgagaa gcgctgtatt gcttggtttt tatggttttt atatgtctat
     2401 attataaata gatttaattg cctctcccga ggaaccaagc ccaaggcgtg ccaccgcccg
     2461 gcgcgcctct caggccatcc gtgtccgctg caagctgggt agggaggggc aaacgctcct
     2521 agtgtggcaa tgtgccggag ctggccgtca gctgcatccg gtactggcgc ggcgtatggc
     2581 ctgtggcgcg gcggaaggcg tagcagaagc ccgaaggcga gccgaagccc atggaaaagg
     2641 cgatggattt cacgctctcc ccgctggcga gcaggcgctt ggcgttgtcg atgcgggtac
     2701 gcgctatata gtcgccgatg gagcattccc ggctggcgcg gaagccgcgg gtgagctggc
     2761 ggatggacag gccgcacaag gtggcaagtt ccgtcagggt tggcgggctg cgtacctcgc
     2821 gcaggcgctc atcgatcatg cgcaggcgcc agccggccag gccgccggtg gcgttgtcct
     2881 tgtccagcgc gaggtaatag cggttgagct cgatggcgat ctgcaccgcc atggcctcgg
     2941 aataggcgtg gctggcgaag cccggattgc gcgcttcctg gccaaggcgg agcaggaggt
     3001 tctgtacttc ctcggacggg acgctgagcg tggcctccag ccttcggtcg gtccattcca
     3061 gctcctggcc gagccagcgc cggaagatgt ccttctgcag caggcagagg atggaaactt
     3121 ggctgccgga atcaccgcgc atgcgcatgg cttcgtccgg cggggccatg aagacgcggc
     3181 cgagcggctc gaaacggtgc ggcgcccaat ggtccttgaa acaggcgcgg gaattggccg
     3241 ggcggggggt gacggcgagg tcgagccaat agatgtcgcg gcagacgaaa ttctcgccag
     3301 gcgcggaaat gtcgaacttc accacctgga cggtggcggc ggggacgctc atctcggcat
     3361 cgatggtcat gatgccccgg ggggtgccgg gggcgccgtt ttcgccaatg gcaagggcca
     3421 tatctctgct gtctctctaa ttctgtctct tgggttctcg ggttttgggg agcgtatcat
     3481 gaccggacaa attaaggcaa ttcgctttcc ggcccggcca cgccacaacg gcccatgttc
     3541 gacatagacc gagattgcag cccttgcgcg gcaaatggat aaaccgcgtg gaacgcggag
     3601 cgccgcgagc gaggagagtg agttaatgtc caagggactt tttgacctca ccggcaaggt
     3661 gacgctggtg acgggcggca atagcggtat cgggttcggc tttgcccgcg gcgtggccaa
     3721 gcagggcggt gccgtggaaa tctggggccg ctcggccgag aagaatgcgg cggccaaggc
     3781 cgagctggag gcgttcggcg ggcgcgtggt gacgcggcag gtggacgtgt ccaaggaaga
     3841 ccagatcatc gccggctatg aggcgctcat caaggagttc ggacgcatcg attgcgtgtt
     3901 cgccaattcc ggcggtgctg ccaaggttaa ctcgctgctc gacctcacca atgaggaata
     3961 tcacgacctc atcaatttga acctgcatgg cgcctattac acgctgcgcg aaggcgcgaa
     4021 gcttatggtg aagcgggccg aggccggcga gccagggggc tctctggtgg cgtgcggctc
     4081 gctctccatg ttcatgggcc tgccgggcaa ggcgcattat gccggctcca aggccgcact
     4141 cggcgccatc attcgcggca tggcggtgga attcggcaaa tatgccatcc gcgccaatat
     4201 catcgcgccg gggctcatct ccacgggcat gacgggcgac gaccagagcc cggtggcgaa
     4261 attcatggcc tccaagacgc cgatccc
//
LOCUS       DASQCV010000391         1928 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2076763, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000391 DASQCV010000000
VERSION     DASQCV010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2076763"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..898
                     /locus_tag="VEQ16_05925"
     CDS             <1..898
                     /locus_tag="VEQ16_05925"
                     /EC_number="2.7.10.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045226 - extracellular polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="polysaccharide biosynthesis tyrosine autokinase"
                     /protein_id="HYP63403.1"
                     /translation="RILSTAAVPAEPGTPHRSLILGAAMALGLCAGVLLASLRDALDT
                     SFHSGTEIHAATGLSCHALVPETSRPYEKALESPFSLYAEQLRALRTGLGLTGGPCRI
                     IAITAARPGEGKTTLSVAFARALASAGLRVLAIDGDIRQPSFDAIFALSGAPGITDHL
                     AGVAACDAIMFTDELSGARIMPAGTQAKAALSLFLSPALPQFLAELRKDFDLILIDAP
                     PAFALAEGRVLARLADCALLCIRWGQTPRRIVTAAIALLREDGAILAGTALTRVNAAA
                     HGKSGYADAEVYQPRYGGYFKR"
     gene            complement(959..1171)
                     /locus_tag="VEQ16_05930"
     CDS             complement(959..1171)
                     /locus_tag="VEQ16_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63404.1"
                     /translation="MARNADMARFLERLSPSLATSFSHEQLAAIELHFSMRNRAEHVV
                     DWRREFRIGRLRGYVVVLAGRVRAGE"
     gene            complement(1184..>1928)
                     /locus_tag="VEQ16_05935"
     CDS             complement(1184..>1928)
                     /locus_tag="VEQ16_05935"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HYP63405.1"
                     /translation="GMGVLIVSSKCVAAGLVHVDNAPASLAAGLLALVWDTGCSPALS
                     IWYLFVLFVVSLGCFALLDGRAARLPWLLAGALVIFWIPLPSYVYLDRVGMFAPFFLM
                     GAVAGFAGGRWEALIDQAWPWTLACFAVALAIVAALPTGGVLTQKTVLLLMGAGSAPA
                     IHGSLRQLRFSPLRQALSLLGRYSFMIYLFNTLCIGLVKGILLLGWSWDGANFLPFAA
                     MLMCAGLMGPVALKRYAFRHIRRLDLLTD"
BASE COUNT          396 a          674 c          538 g          320 t
ORIGIN      
        1 gcgcatcctc tccaccgccg cggtgcctgc tgagccgggc acgccgcacc gcagcctcat
       61 cctcggcgcg gccatggcac tcggcctctg cgccggtgtg ttgctcgctt cattgcgcga
      121 cgcgctggac acgtcgttcc attcaggcac cgaaattcat gccgccacgg gtctgtcctg
      181 tcacgcgctg gttccggaaa catcgaggcc ttacgagaag gctctggaat cgcccttctc
      241 gctctatgcg gaacagctgc gcgccttgcg cactgggctg ggcctgacag gcgggccatg
      301 ccgcatcatt gccatcactg ccgcgcgccc gggagagggc aagaccacgc tctcagtcgc
      361 cttcgcccgc gcgctcgcca gcgcgggctt gcgcgtgctc gccatcgacg gcgatatcag
      421 gcagccgagt ttcgacgcca tttttgccct gagcggcgcg ccgggcatta ccgaccatct
      481 cgctggcgtc gccgcgtgcg atgccatcat gttcactgac gaactaagcg gtgcgcgcat
      541 catgcctgcc ggtacccagg caaaagccgc tttgtccctt ttcctctcgc cggcgctgcc
      601 gcaattcctt gcagaattgc gcaaggattt cgatctcatc ctcatcgatg cgccgccagc
      661 cttcgccctg gccgaaggcc gtgtgctggc gcgcctggcg gattgtgctc tgctctgcat
      721 acgctggggc cagacgccgc gccgcatcgt caccgccgcc atcgccctgc tccgggagga
      781 tggcgccatc ctggccggta cggccctcac gcgcgtgaac gccgccgccc atggaaaatc
      841 cggctatgcc gacgccgaag tttatcagcc gcgctatggg ggatatttta aacgttgaaa
      901 aaacggatgc gttgctgatg tactgtatct gcgtggaaat agaattgcca ccaccgcctc
      961 actccccggc gcgcacccgt cccgccagca ccaccacgta gccgcgcagc cgcccgatcc
     1021 tgaattcccg ccgccaatcg acaacatgct ctgcccggtt ccgcattgaa aaatgcagct
     1081 cgatcgcagc caattgctcg tgcgaaaaac tcgtggccaa agacggactc aagcgttcga
     1141 gaaaccgtgc catgtccgca ttgcgcgcca aggcgggagg ccctcaatcc gtcagcaggt
     1201 ccaggcgtct tatatgccgg aaagcgtaac gtttgagcgc taccggcccc atcagcccgg
     1261 cgcacatcaa catggcggca aaaggcagga aattggcgcc gtcccagctc cagccgagga
     1321 gcaggatgcc ttttaccaaa ccaatgcaca atgtgttgaa gagatagatc atgaaactgt
     1381 accgccccag cagcgaaagc gcttgccgca ggggagagaa acgtaattgt cttaaagaac
     1441 cgtgaatcgc gggtgccgat cctgcgccca tcagcaataa taccgttttt tgcgtcagca
     1501 ccccgccggt gggcaatgcg gcgacgatcg ccagcgccac ggcaaagcac gccagcgtcc
     1561 agggccaggc ttggtcaatc aacgcttccc agcgcccccc cgcgaacccc gccaccgcac
     1621 ccatcaggaa gaagggagcg aacatcccaa cacggtcgag atagacatag gatggcagcg
     1681 ggatccagaa tataaccaac gcgcctgcca gtagccaggg cagccgcgcg gcacggccat
     1741 cgagcagcgc aaagcacccc aggctcacca cgaacagaac gaacaaatac caaatggaga
     1801 gggcagggga gcaacccgta tcccagacca gcgccaatag tcccgccgcc aggctggccg
     1861 gcgcattatc cacatgcacc aacccagccg ccacgcattt actcgacacg atcaacacgc
     1921 ccatcccg
//
LOCUS       DASQCV010000392         2458 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1747139, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000392 DASQCV010000000
VERSION     DASQCV010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1747139"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1491
                     /locus_tag="VEQ16_05940"
     CDS             <1..1491
                     /locus_tag="VEQ16_05940"
                     /inference="COORDINATES: protein motif:HMM:NF023165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HYP63406.1"
                     /translation="VITICLASTAISGVALALDRGLDRPPPAGAIAAADATDPSGIAI
                     TPSQIVPGVPPAPLSTAAVPATANSSPGSSVTLAPNPLPPPSPGATPASPLLTQAQLA
                     QLVAPIALYPDPLLAQILMASTYPLEVVEAARWVNVNGNRVLKGDALTGALQAQNWDP
                     SVKALVPFPRILQMMSDQLQWTEALGNAFLAQQADVMAAVQSLRQEAMAAGNLKQTPQ
                     CRCVIHSGGGAISILPAEPQVVCPPVYTPAVYGAWPYPAYPPYYFPVPVGFAFAPGFW
                     IGFAPPIELAVFGPFWGWGSIDWGNRWIAVDTARLALVSGGHVWFSGNVWEHNPANRG
                     GVTYADPATRARFDAARVGALSAGARNGAARFGAAGSGTFHGGGGRFGAAAAARGGAS
                     ALHGGAASHGGWGSHGGLASHGGGPHGGGGGPFAKGGPYGGGGGSHGGGGGHFAMGGP
                     HGGEGHFAIGGPHGGGGGHFAMGGPHGGGGGPHGGGGGPHGGGHRG"
BASE COUNT          416 a          735 c          808 g          499 t
ORIGIN      
        1 gtgattacca tttgcctcgc cagcacagcc ataagtggtg tggcgctagc cctggatagg
       61 ggcctggaca ggccgccgcc ggctggcgct attgctgccg ctgacgccac cgacccgtcc
      121 ggaatcgcga ttaccccttc ccagatcgtg cccggggtgc cgccggcgcc gctgtcaacg
      181 gccgctgtcc ccgcgaccgc aaactcctcg cccggaagct cggtgaccct cgcgccgaac
      241 cctctgccgc cgccgtcacc gggcgcaacg ccagcatcgc cgctgctgac gcaggcccag
      301 ctcgcgcagc tggtggcgcc gattgcgctc tatcccgatc cgttgctggc ccagatcctg
      361 atggcctcga cctatccgct cgaagtggtg gaggctgcgc gatgggttaa cgtcaacgga
      421 aaccgggtgc tgaagggcga tgcactgact ggcgcgttgc aggcgcagaa ttgggacccc
      481 agcgtcaagg cgctggtccc gttcccgcga attctgcaaa tgatgagtga tcagctgcag
      541 tggaccgagg cactcggcaa tgccttcctt gcccagcagg ccgacgtgat ggccgcggtt
      601 cagagccttc ggcaagaggc gatggcggcg ggcaatctca aacagacgcc gcagtgtcgc
      661 tgtgtgatcc actcgggcgg cggggccatt tcaatactgc cggcggagcc gcaggtcgtc
      721 tgcccgccgg tctatacccc tgccgtctac ggggcttggc catacccagc ttacccgcct
      781 tattactttc cggtgccggt ggggttcgct tttgcgccgg gcttctggat cggttttgcg
      841 ccacccatcg agctcgcggt gttcgggccg ttctggggct ggggctcgat cgattgggga
      901 aatcgctgga tcgcggttga caccgcccgc ttggcgctcg tctccggggg ccacgtttgg
      961 ttttcgggta atgtgtggga gcacaacccc gccaatcggg gcggtgtcac ctacgccgat
     1021 cccgcgacac gcgcccgctt tgatgcagcc cgcgttggtg ctctcagtgc gggggcgcgc
     1081 aacggtgcgg cgcggtttgg ggccgcgggc agtgggacgt ttcatggcgg cggcgggcgc
     1141 tttggcgctg cggctgcggc tcgcggaggg gcgtcagcgc tccacggcgg agcggcatcc
     1201 catggcggat ggggatctca tggcgggctc gcttctcatg ggggtggacc gcatggcggt
     1261 ggcggagggc ccttcgcgaa gggtggacca tatggtggtg gtggcggatc gcatggcggc
     1321 ggcggagggc attttgcgat gggcggaccg cacggcggcg aagggcactt cgcgataggc
     1381 gggccgcacg gcggtggcgg agggcacttc gcgatgggtg gaccgcatgg cggtggcggt
     1441 ggaccgcatg gcggcggtgg cggaccgcat ggcggcggtc atcgtggctg agatcgcgct
     1501 cggctgagac ggctaacaat taacagcaga ctgtagggcc ttaaactcgg gagcagcggg
     1561 gccgaagaaa ttggtgtggc taagctccct tcagactggt cgctccagaa cggcggcttg
     1621 tccggcacgg gtcggataac gtaacccttt aatctcgcgg cgttgtaagg ggcacagccg
     1681 atcaaatcag cgggttacga gacgccgttg acaccaaaaa agaaaattca aggctttagg
     1741 ctagagcctg tcgtcaaatt actttgaggg tgcacgtaaa acgagtcaac gctaggaata
     1801 gtgtagtaaa aagagtctac cttcacaaca gtttgtgtga ttcatggaga gtccctccgc
     1861 aagatcacac ccgtatcgcc aggcggcctg gtcgtggctt acgcagacga cctgatcccc
     1921 gataaagggc agttccgcta gcgtttcccc aatcggctca gctattgttg tcctacaacg
     1981 atttttcgcg atattttggc cgctcttttt ggccggcttc gagccgaatc gccgcatgac
     2041 ggatgcggct cataagcagc attcggaaac ccgccgcccg agcgatcgcg accgcatcgt
     2101 aacaaccggc ccagctgctg agccctctct cgggtgtgcg cgatgacggg ttagcagacg
     2161 atttcttgcg cgggcagcgc gttgaagtgt gtgtgactgc atcgtccgac ggatatcatg
     2221 cagggcccag gcggtgatgc ccgacgagcg gttgcgcttt actgccgatg ccacgttggg
     2281 cggtgccgac cgtatgctcc tcgatgacaa ggcgctcctt gtccttttcc ccctttacga
     2341 tgcgagctca gatagcgaca tctgtttacc attacctccc gtccatcacc atttactttt
     2401 ttatgcacta tattataaaa aactaaagtc tttattttag ccttctggcc ctgagacg
//
LOCUS       DASQCV010000393         3434 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_252055, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000393 DASQCV010000000
VERSION     DASQCV010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3434
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252055"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            218..1036
                     /locus_tag="VEQ16_05945"
     CDS             218..1036
                     /locus_tag="VEQ16_05945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63407.1"
                     /translation="MVPGLFPLALAGCNQGYSPNTYASNAAQVEANVQRGVIIGVRQI
                     TISANGTLAVATGAAAGGVAGSQVSGGPVATTLGAIGGTLAGSIGGAAAAQAVGDTKG
                     WEYIVQEDGNKLVSVTQTSKTALPVGLHVLVIADTQQARIVPDYTVQTASAPPAANAT
                     KPAASNGSTATEIHLSPLLPETGAAEPLPAAPVATANDAASAPAPGPASANQAAAPPA
                     PSSTSGAAATAEATNNGNSTAATPSAGSTAASAQAAPTAPASTPSANSSSAATP"
     gene            1545..2894
                     /locus_tag="VEQ16_05950"
     CDS             1545..2894
                     /locus_tag="VEQ16_05950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019012662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYP63408.1"
                     /translation="MSADLSRRGFIASIAASLGGLAMPSQAHAQPARPISLTNFRLFD
                     GRSGSLREGLSILVKDSRIDSVAEGNPAPPDGVQVIDCGGRVLIPGLIDMHWHSLFAA
                     VPLQVLLTGDFGYVYVAAVAEAERTLMRGFTTVRDLGGPAFALQQAIDQRIVPGPRIY
                     PSGTMITSSGGHGDLRWLHEVPRGSVLSQSEQTGSSAIVDGPDQVTLRVREQLLRGAS
                     QIKLVGSGGVSSPRSPLDALTLTEPELRAGIQAAQDWNTYVAVHAYTPRAIQRAITAG
                     ATCIEHGHLMDEETAKMMAEKDIWLSTQPFLDANDTVPLTGESRAKMLQVFAGTDKAY
                     TLAKQYKIKTAFGSDLLFSGTLTARQGTMLSHLVRWYTPAEILIMATSTNADLLALSG
                     PRNPYPGKLGVVEDGALADLLLIDGNPLEDVGLLTDPGKNIVLIMKDGSIYKDTRPA"
     gene            3233..3424
                     /locus_tag="VEQ16_05955"
     CDS             3233..3424
                     /locus_tag="VEQ16_05955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63409.1"
                     /translation="MEYFDGGEYVQPKEQPMRKNPQTSGIGIGCGDFLRDTAAVYAAL
                     QSVWARAPAVSGFSKLVCS"
BASE COUNT          666 a         1084 c         1044 g          640 t
ORIGIN      
        1 cggtcattgc cagcctcacg caaattctcc gtacccttgg cggccaaagc cgctggaata
       61 ctgtttagga gcgggtgatt cagaggaaaa acctggcgga ccaaccgccg ggtagccggg
      121 cccaggcgtg acactgcgtg actcaatgac tatactgacc ttagtctgac tcgaattaac
      181 ggacccttcc ttgcgccgcc tggctttacc ctttgttttg gtccctggac tcttcccgct
      241 tgccctcgcc ggatgcaatc agggctactc ccccaacacc tatgcctcca acgccgcaca
      301 ggtggaagcg aatgtgcagc gtggggtgat tatcggcgtg cggcagataa cgataagtgc
      361 gaatggcaca ctcgctgtgg ccaccggcgc cgccgccggt ggcgtcgcgg ggtcacaggt
      421 ttcgggcggc ccggtggcga cgacgctggg tgcgatcggg ggaaccctgg cagggagcat
      481 cgggggcgca gccgccgcgc aagcggtcgg agataccaag ggctgggagt atatcgttca
      541 ggaagacggc aataagctgg tttccgtcac ccagacgagc aagacggcgc tgccagtcgg
      601 actgcatgtc ctggtcatcg ccgacacgca gcaggcccgg atcgtgcctg actataccgt
      661 gcagaccgct tcagcgccgc ccgccgcaaa cgcgaccaaa cctgctgcat cgaacggttc
      721 tacggccact gagattcacc tcagcccgct tctgccagag accggcgcag cggagccttt
      781 gccagccgct cccgttgcca ccgccaatga tgccgccagc gcgccggcgc cgggtccggc
      841 ttctgccaat caagctgcgg cgcccccggc accatcttcc acatccggcg cggctgcaac
      901 agccgaagcc acaaataacg ggaattccac cgcggcaacg ccttcagccg gctccacggc
      961 cgcatctgcc caggccgcac caacagcgcc ggcctccacc ccgtcggcaa actcctcgtc
     1021 cgccgccacg ccctgacgcc gtggcggctc cacgccgcgt tgacaacggc gcctggcgca
     1081 ttatctcaag ttgcggcaaa ttttcatcca ggtggatgcg gcgttctggg acgccggctg
     1141 gggcgtttcg gctgccacgt ctctgaaggc gctgcaaaga agagcgctgt aaatgagaaa
     1201 attgcagata agaaaaatca cccacccaga gtcccgatgg caagaggggt atccatgatc
     1261 gaaatgaact agatggattg ctcgcgttgt aatgggaatt ttcaccaacg atcgcacccg
     1321 cgcctcgaac cattggttca gcccggtttg gataaggata aggggaacag ggagtcgcgg
     1381 tacgccatcg ccatgcccgc tcagccgcgc gaatagcgca aggcaagcga agcaaatatc
     1441 ggaggtagat catgctcaca tgcacatcgg ctgatccgga ccctttcgcc agtcagacca
     1501 gctgtatctg ccatcatccc gcccttccgt cactgatgcg gcgcatgagc gccgacctgt
     1561 cccggcgcgg cttcatcgcg agcatcgctg catcgctggg cgggcttgcc atgcccagcc
     1621 aggctcatgc gcagccggcg cggcccattt cgttgaccaa tttccggcta ttcgatggta
     1681 gatctggaag tttgcgcgaa gggctcagca tcctcgtcaa ggacagccgc atcgactccg
     1741 tggcggaggg gaatcccgcg ccgccggacg gggtacaggt aatcgattgc ggcggccgcg
     1801 tgctgatacc cgggctgatc gacatgcact ggcattctct gttcgccgcg gtgccgctgc
     1861 aggtcctgct gaccggagat ttcggctatg tctacgtggc cgcggtcgcc gaggctgagc
     1921 gcacgttgat gcgcggcttt acgaccgtcc gggatcttgg cggcccggcg ttcgcactgc
     1981 agcaggccat cgatcagcgt atcgtgcctg ggccgcgcat ctatccgtcc ggtacgatga
     2041 tcacctccag cggcggccat ggcgacctgc gctggctcca tgaggtgccg cgcggcagcg
     2101 ttttgagcca gtccgagcag accggctcaa gcgccattgt ggatggaccg gatcaggtca
     2161 cgctgcgggt acgcgagcag cttctgcgag gcgcgtcgca gatcaaactg gtcggcagcg
     2221 gcggcgtttc ctccccgcgc agcccgctgg atgccctcac gctgaccgag ccggagctgc
     2281 gcgcgggaat acaggcggcg caggactgga acacctatgt cgcggttcat gcctatacgc
     2341 cccgtgccat tcagcgggct atcacagcgg gtgccacctg cattgaacac gggcatctca
     2401 tggacgaaga aactgccaag atgatggcgg agaaggatat atggctgagc actcagccat
     2461 tcctggacgc caatgacacg gttccactga cgggcgaaag ccgtgccaag atgctccagg
     2521 tattcgcagg caccgacaaa gcctacacgt tggccaagca atacaagatc aaaacggcgt
     2581 tcggctccga cctgctgttt tccggtacgc tcaccgcgcg ccagggcacg atgctcagcc
     2641 atctggtccg ctggtacacg ccggccgaga ttctcatcat ggcaaccagc acgaacgccg
     2701 atctgctggc cctgtccggc ccgcgcaatc cctacccagg caagctcggc gttgttgagg
     2761 atggcgccct ggcggacctg ctgctcatcg atggcaaccc gctcgaagat gtcggcctac
     2821 tgacggaccc gggcaaaaat atcgtgctga tcatgaagga cggttctatc tacaaggata
     2881 cccgtcccgc gtgagcatcg cttgtgcgcg cagggctagc cgctttgcct tagccctgct
     2941 cgtcccgagg caagctatgc cataaatcac acgcacgacg gatgttcccc aggccttgct
     3001 gctgccggaa cgggcgctgg tataggcgtt tgagattgct gcccccatcg tcaaccgagg
     3061 cgatatggcg cggggcaagc cgatcacgaa gccggtcgtg ttttaccccg ccggctaggt
     3121 caggtcagcc cggtccaagg ctggagactt aaaaaacggt catttgccgt tagttgaggt
     3181 gtcgtttccg tctgcttaac ttatattcaa gctggccgga attttttaac gaatggaata
     3241 tttcgatggc ggcgaatatg tgcaaccgaa ggagcagccc atgcgaaaaa atccgcaaac
     3301 gtcaggcatt ggtatcgggt gcggtgactt tttgcgcgac acggcggcgg tttacgcggc
     3361 gttgcaatcc gtctgggcac gtgccccggc ggtttcaggc ttcagcaagc tggtttgttc
     3421 gtaggaaggg gtag
//
LOCUS       DASQCV010000394         1669 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_750226, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000394 DASQCV010000000
VERSION     DASQCV010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_750226"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            375..743
                     /locus_tag="VEQ16_05960"
     CDS             375..743
                     /locus_tag="VEQ16_05960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63410.1"
                     /translation="MPIWKIQGGPNQTIAKELCAKHYMRQRRTGDATIKRKPGPKPQP
                     KPQGKIDPLMAGGCVGAARGAGSRQLHAELIKLRRENLSLRMQLAQAQRPRRADVRDH
                     RTQLDVRFLQNSLSESPVAA"
     gene            complement(1212..1448)
                     /locus_tag="VEQ16_05965"
     CDS             complement(1212..1448)
                     /locus_tag="VEQ16_05965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63411.1"
                     /translation="MATSSTRRELMSGLAVAALLPVAAWAQPFPNRPIKLIVPFAAGG
                     AADLFGRSLASGFPRSPASRSWSRPAPAWAGSPA"
     gene            complement(1465..>1669)
                     /locus_tag="VEQ16_05970"
     CDS             complement(1465..>1669)
                     /locus_tag="VEQ16_05970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006559107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63412.1"
                     /translation="EEWFAGGMADGFVIMPAYFPGAFEDFVNLVVPELQQRGLFRRDY
                     SGPTLRDHLGLPRPAATPALKSA"
BASE COUNT          349 a          541 c          495 g          284 t
ORIGIN      
        1 caaatccacc cccgcggaag ccaccacgtt gagcaaaagc cccctccggg agcatcgttg
       61 tcaatatcag ggccgcggca gcagcaaacc aaaatcgttt catgggcgcc tccttcccac
      121 gacagtcacc tccctcaaga acatctagcc catccatccc gggctgaaca cgacatgaat
      181 gtgtttagtt ccaggagagc tggaggtgac gattaaaagc caccggactt acaggaacct
      241 gacagatgcg ttcttcaaac aaacgttcgc ccggccgcgg ccgcaccgcg cttaacggaa
      301 ttcggaaatt ccgttaagtc accattaaca aaatttaaac tctacttttt ggcaattctg
      361 ttaaatcaat gcgcatgccc atctggaaga tccaaggtgg tccaaaccaa accatcgcca
      421 aggagctctg cgccaagcat tacatgcggc agcggcgcac cggcgatgca acgattaaac
      481 gcaagccagg gccaaagccg cagccaaagc cgcagggcaa aatcgacccg ttgatggcgg
      541 gcggctgcgt aggtgccgcg cgcggggccg ggagtcggca gctgcatgcg gaactcatta
      601 agctgcgacg cgagaactta agcttacgca tgcaactggc gcaggcgcag cgcccgcggc
      661 gcgccgatgt ccgtgatcac cgaacacagc ttgacgttcg cttcctccag aactcccttt
      721 ctgagtcgcc ggtggcggca tgaagcttga ccggatcagg ccaacaggtc cgcaagccac
      781 gtcgcgtcgt tcacgtcact cttgcggcca ggcacgttct tcacatgcct ggcattcgcc
      841 agaacctgag cgggctggcc actctccatt gcctacattc atgagacgcc aatgcggccg
      901 cgggcgatcg ccctgctgcg cgcgcgccac gattggcaag tccgccgccg cactgccgag
      961 aagcgtgatg aactcgcgcc tcttcattcg atcacctcgt cggcgagggc gaggagcgta
     1021 ggcggcaccg taaggccgag cgctttggca gtcttaagat tgatgaccaa ctcgtattta
     1081 gtcggcttgc ctcgccgggc ttttcgcctt tcaggatgcg gccgacatag gcggctgcac
     1141 ggatcgcgga gagcgccgct gctccggcga ggcggacgtg catccgtctg gcgcgctctt
     1201 agcgatggcg tctacgccgg tgagcccgcc cacgccggcg cgggtctcga ccacgatctg
     1261 ctggccgggc tccgcggaaa gccgctcgcc agcgagcggc cgaacaggtc ggcggcgccg
     1321 ccagcggcaa acggcacgat cagcttgatc ggcctgttcg gaaacggttg agcccaggct
     1381 gccaccggca acagcgccgc gacggcgaga ccggacatca gttcacgtcg cgtcgatgag
     1441 gtggccatgt gttcgcttag aggctcaagc cgatttcaaa gccggggttg cggctggtcg
     1501 cggcagaccg aggtgatcgc gcaaagtggg tcccgaatag tcccgcctga acagcccccg
     1561 ctgctgcagc tcgggcacga cgaggttcac gaagtcctcg aaggcgccgg gaaagtatgc
     1621 cggcatgatg acgaagccat cagccatccc gcccgcgaac cactcctcg
//
LOCUS       DASQCV010000395         2926 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_88444, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000395 DASQCV010000000
VERSION     DASQCV010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88444"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..314)
                     /locus_tag="VEQ16_05975"
     CDS             complement(<1..314)
                     /locus_tag="VEQ16_05975"
                     /inference="COORDINATES: protein motif:HMM:NF024646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="squalene--hopene cyclase"
                     /protein_id="HYP63413.1"
                     /translation="MDVAALQKQVSSDELSQAISAAIGWLDREQAPDGYWAGYAETNV
                     AMEAEWLLTSHFLGVPVPHEDKVIAGILNRQRADGSWEVYPNAPKGDLNGTVEAYAAL
                     RA"
     gene            458..1420
                     /locus_tag="VEQ16_05980"
     CDS             458..1420
                     /locus_tag="VEQ16_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012226594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYP63414.1"
                     /translation="MSDLLAIFGALADPTRLRIMALLRTMELSIGELALVLGQSQPRI
                     SRHVKILADAGLVSRRKEGSWVFLGLGEAELVAPLLAAIDALNGQGRGDHWAAADIAR
                     LAAVRADRASAAEDYFNAHAVAWDEMRSLHVAESAVEAAIRAALADAPIGRLVDIGTG
                     TGRIIELLGPSAESAIGIDRSPEMLRLAREKLGRVGAKNVELRQGDMFALPLLSASAD
                     TVIIHQVLHYAQNPRGVIAEAARLLGPSGRLLVVDFGPHEKEELRTRHAHARLGFTDA
                     QMEAWFAAFGLKLAPPQVLEGGELTVNLWLGQLTMPASAREETI"
     gene            1417..2310
                     /gene="metF"
                     /locus_tag="VEQ16_05985"
     CDS             1417..2310
                     /gene="metF"
                     /locus_tag="VEQ16_05985"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014247148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HYP63415.1"
                     /translation="MKAAFADLPGDIDISFEFFPPKTEAMAAALWDTVQALAPYDPRF
                     VSVTYGAGGSTRARTHATVTRIETETGIAAAAHLTCVGASRDEVLEIARDYWSAGIRH
                     IVALRGDPPVQGQKFEAHPDGFSNARELTAALLTVAPFEISVAAYPEVHPEAVSAQAD
                     LDFLKAKIEAGAIRAITQAFFDVEAFLRFRDAVAAAGIKAELVPGILPIVNAAQARKF
                     ARSIPPALAQLLEGLDAQPEARPLVAASIGADMCRTLYAEGVRQFHFYTLNRAPLTAS
                     ICHLLGRKAALQPALASVSGT"
     gene            2501..>2926
                     /locus_tag="VEQ16_05990"
     CDS             2501..>2926
                     /locus_tag="VEQ16_05990"
                     /inference="COORDINATES: protein motif:HMM:NF013697.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HYP63416.1"
                     /translation="MKYASALSMAALGLAMGLSAAQAQTNSLTVYSAQHPQVDAMLAA
                     AFTKETGIKVQLHEGEGPDVANQIVQEGADSPADVFFTENSPELNLLDEKGLLAPVDP
                     ATLKLVPAQYSAQSGNWLGVLARENVLAYNPSKIKESELP"
BASE COUNT          519 a          823 c         1016 g          568 t
ORIGIN      
        1 ttggcgcgca gggcggcata ggcttccacg gtgccattga gatcgccctt tggcgcgttg
       61 ggatagacct cccaggagcc gtctgcgcgc tggcggttga ggatgccggc gatcaccttg
      121 tcttcatggg gaacgggaac cccgaggaaa tggctggtga ggagccattc ggcttccatc
      181 gctacatttg tctcggcata gccggcccaa tagccatcgg gcgcctgctc tcggtcgagc
      241 cagccgatcg ctgcggagat cgcctggctg agctcgtcgg agcttacctg tttttgcagc
      301 gctgcgacgt ccatgaaact ctccagatat ccaaggttca agagaggcaa tgtcataggg
      361 cgcccagccg cacaaggcga tgatgaggcg ggaagggtca tagagttgat catgggcaaa
      421 agttgacaaa gacataaaga tatctttatg tgtatgtatg agtgatcttc tcgccatctt
      481 cggtgccctg gctgacccaa cgcggctgcg catcatggcg ctgctgcgga ccatggaact
      541 ttccatcggc gagctggccc tggtgctggg acagagccag ccgcgtatct cgcgccatgt
      601 gaaaatcctg gccgatgccg ggctggtgtc gcggcgcaag gaggggagct gggtgtttct
      661 cgggctcggc gaggcggaac tggtggcgcc gctgctggcc gccatcgatg ccttgaacgg
      721 gcagggcaga ggggaccatt gggcagcggc ggatattgcg cgcctggctg cagtgcgtgc
      781 cgaccgcgcc agcgccgccg aggattattt caacgcccat gccgtggcat gggacgagat
      841 gcgctcgctg catgtggcgg aaagcgcggt ggaggcggcg attcgcgctg ctttggccga
      901 tgcgcccatt ggccggctgg tggatatagg cactggcacg gggcggatta tcgaattact
      961 ggggccgtcg gcagagagcg cgattggcat cgaccgcagc ccggagatgc tgcgcctggc
     1021 gcgagagaaa cttggccggg tgggggctaa aaatgtggaa ttgcgccagg gcgacatgtt
     1081 tgctctgccg ctgctgagcg cttcggccga tacagtgatc atccatcagg tgctgcatta
     1141 cgcgcagaat ccgcgcggcg tgattgccga ggcggcgcgg cttctgggcc caagcgggcg
     1201 gctgctggtg gtggactttg gcccgcatga gaaggaggag ctgcgcaccc gccatgccca
     1261 tgcgcggctt ggttttactg atgcgcagat ggaggcctgg ttcgccgcgt ttgggctgaa
     1321 actcgccccg ccgcaggtgc tggaaggcgg cgagctgacc gtgaatttat ggctcggcca
     1381 gctcaccatg ccggccagcg cgagggaaga gacgatatga aagctgcatt tgccgatctg
     1441 ccaggagata tcgacatctc cttcgagttt ttcccgccca agacggaggc catggcggcg
     1501 gcgctgtggg atacggtgca ggctttggcg ccctatgatc cgcgtttcgt gtccgtgacc
     1561 tatggcgccg gcgggtcgac gcgtgcgcgc actcatgcga cggtgacacg gattgaaacc
     1621 gaaacgggga ttgcggcggc ggcacatctc acctgcgtag gggcgagccg ggatgaggtg
     1681 ctggagattg cgcgcgatta ctggtcggcg ggcatacgcc atatcgtcgc gctgcgcggc
     1741 gacccgccgg tacaagggca aaaattcgaa gcgcatcctg atggtttttc caacgcgcgg
     1801 gagctgacgg cggcattgct gacggtggcg ccgttcgaga tttcggttgc ggcctatccg
     1861 gaggtgcatc ccgaggcggt gagcgcgcag gcagatctgg attttctgaa agccaagatc
     1921 gaggccgggg cgatacgcgc catcacccag gcgtttttcg atgtggaagc gtttctgcga
     1981 ttccgcgacg ctgtggcggc tgccggcata aaggctgaac tcgtgcccgg cattttgccg
     2041 atcgtgaatg cggcgcaggc gcgcaaattc gcccgctcca ttccgccggc tttggcccag
     2101 ctgctggagg ggctggatgc gcagcccgag gcgcgtccgc tggtggcggc gagcataggc
     2161 gcggatatgt gccgcacgct ctacgcggaa ggcgtgcggc aattccattt ctatacgctc
     2221 aaccgtgcgc ccttgacggc ctccatctgc catctgctcg ggcgcaaggc ggcacttcag
     2281 ccggcacttg cgtcggtgag cggcacgtaa atctggctgc ctcagcagcg ccccggaaca
     2341 ctctcggtgg cgcctgatgt gaagatttga tccagcgcaa agcggcaggg caaaatttat
     2401 gctgattggc gattgacagg ggggcggggc tccgcctatg tcagttatgt caattgagaa
     2461 tgtttctcaa tagcagttag acgggagttt cggtccttcc atgaaatacg cctctgctct
     2521 gtccatggcc gcgctcggcc tggcgatggg tctttctgcc gcccaggcgc aaaccaacag
     2581 cctgacggtt tatagcgcgc agcacccgca ggtcgatgcc atgctggccg ccgccttcac
     2641 caaggagacg gggatcaagg tgcagctgca tgagggcgag gggccggatg tggcgaacca
     2701 gattgtgcag gaaggggcgg acagcccggc ggatgtgttt ttcacggaga attcgcccga
     2761 gctgaatctg ctggatgaga aagggctgct ggcgccggtc gaccccgcca cgctgaagct
     2821 ggtgccggcg cagtacagcg cgcagtccgg caattggctg ggcgtgctgg cgcgtgaaaa
     2881 tgtgctggcc tacaacccgt ccaagatcaa ggagtcagag ctgccc
//
LOCUS       DASQCV010000396         3956 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2243971, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000396 DASQCV010000000
VERSION     DASQCV010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3956
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2243971"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(24..242)
                     /locus_tag="VEQ16_05995"
     CDS             complement(24..242)
                     /locus_tag="VEQ16_05995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63417.1"
                     /translation="MDQVTHYSYLSRADYTLRDAPVRERKFPSPEQEDSELPIGLRIL
                     SILALSAILWTGLIGTFILVWRCLQHLA"
     gene            531..2534
                     /locus_tag="VEQ16_06000"
     CDS             531..2534
                     /locus_tag="VEQ16_06000"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HYP63418.1"
                     /translation="MIISAPRLFLGEAFSGPGAIAVEDGRITALLPGERRGDVVLTQG
                     FLSPGLIDLHNNGAFGVDCATASAAEWDVFIAGLAARGVTSVLPTIITAPLPSLQESA
                     RGVAEAMARHKAILGLHLEGPFLAPEKRGAHQRQFLRLPDDEALDEILPLAPVLRLVT
                     LAPELPGALAAIARLREAGVLVSLGHTGADAATMRAAASAGASLVTHVFNAQSPLSHR
                     APGAPGVALTDPRFFPCLIADAVHVDPAILAMAFAACPHAVAVSDSILVAGLEPGETR
                     QFGGAPATLGPQGAGLRPDGTIAGAGIILDEGLRRLIQAGVAPETAFAAATSRPAAAL
                     GLGDRGRLAPGLRADLVWWSDDFTPLQSWTGGVSLAPPARPRGTEAAREELADLDERP
                     TIGIVQAFLAQEQSAQRALGNAAPVLAELAEAVATKLRDGGRLFYAGAGTSGRLGLLD
                     AVECAPTFGIQDGLIVPLLAGGQGAFIKAVEGAEDDEAAARAALDEHGFCADDALVGI
                     AASGTTPFTLAALRQARALGGLTGAIVNNPHTPMAEAADIPVELLTGAEIIAGSTRLS
                     AGSAQKIALNILSSIVMIRLGKTYGPFMVDMRASNAKLRRRAMRMLQSITGASEQDAA
                     LALTACNMHVKRAALMLLRKISAAEAEQALAASSGSLRRALRG"
     gene            2616..3143
                     /locus_tag="VEQ16_06005"
     CDS             2616..3143
                     /locus_tag="VEQ16_06005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63419.1"
                     /translation="MSDRSGKIVGFARKLDDFIIDNVLQPGVNRADWHLGIDLHNLAR
                     LCAVLGAGAGLIWVHGYDRPYSADFWQDLFCLLVMSSAAFLQIRANEASAPRRAALAP
                     AARLTGLLWRSLWLADLALLPSQWPVEAHGELLGNFAWTVLLVLPYWIICCRTVPPPE
                     RRLAGELRYATIPVQ"
     gene            complement(3380..>3956)
                     /locus_tag="VEQ16_06010"
     CDS             complement(3380..>3956)
                     /locus_tag="VEQ16_06010"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019460921.1"
                     /note="catalyzes the formation of malate from glyoxylate
                     and acetyl-CoA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="malate synthase G"
                     /protein_id="HYP63420.1"
                     /translation="PRAGANTAWVPSPTAATLHATHYHQVDVFARQEELRARPPAKLS
                     DLLTIPLAHGINWKAEEIQQELDNNAQGLLGYVVRWVDQGVGCSKVPDIHDVGLMEDR
                     ATLRISSQHIANWLHHGVVSEAQVLETLKRMALVVDRQNADDPAYKPMAPAYDGPAFK
                     GACELVFEGRAQPNGYTEFVLTRRRREAKGG"
BASE COUNT          638 a         1276 c         1328 g          714 t
ORIGIN      
        1 aacgggccgt tggatgcaag ccgtcaggcg agatgctgca ggcagcgcca gaccaggatg
       61 aaggtgccga tgaggcccgt ccagagaatg gcggacagcg ccaggatgga cagaattctg
      121 aggccgatcg gcagttccga atcttcctgc tcgggagatg gaaatttgcg ctcccgcacc
      181 ggcgcatcgc ggagggtgta atccgcacgc gaaagatatg agtaatgcgt gacttgatcc
      241 ataaaaatgt cccttgtaat caagaggatt accaatcagc ctgcctgctt actgttcgct
      301 acttagtata ttctgtgtac tttccaacat taatacttca ggtttcacgc acttgtgaca
      361 gcacaagcgc tgatggttat aaatgcacgg ccatgcgccg tgaatgaagc cgcaagggct
      421 cgacagcgga cgcggacagg gctacaagat tcagatattt tgattattta tcaatgagtt
      481 ttgcaacatc acggcatacc ggcgccgcaa ggcgctggaa tcgaggcaat atgatcatct
      541 ccgccccgcg cctgttcctg ggtgaggctt tttcgggccc cggcgccatc gcggtggagg
      601 acgggcggat caccgctttg ctgccgggcg agcggcgcgg cgatgtcgtg ctcacccaag
      661 ggtttctcag ccctgggctg atcgatttgc ataataacgg cgcgtttggg gtggattgcg
      721 ccaccgccag cgcggcggaa tgggatgtgt tcatcgccgg ccttgccgcg cgcggcgtca
      781 cctctgtgct gcccacaatc atcaccgcgc cgctgccttc cttgcaggaa tcggcgcggg
      841 gcgtggcgga agccatggcg cggcacaaag ccatattggg gctgcatctc gaaggcccgt
      901 ttctggcgcc ggaaaagcgc ggcgcgcatc agcggcaatt tctgcgcctg ccggatgacg
      961 aggcgctgga tgaaatcctg cccctcgccc cagtgttgcg gctggtcacg ctggcgccgg
     1021 aactgccggg ggcgctggcc gccatcgcca ggctgcgcga ggccggggtg ctggtctcgc
     1081 tcggccatac cggggccgat gccgccacca tgcgcgccgc tgcatccgcg ggggccagcc
     1141 tcgtcaccca tgtattcaac gcgcaatcgc cgctctcgca ccgcgcgccg ggcgcgccgg
     1201 gcgtggcgct gaccgacccg cgctttttcc cctgcctgat cgccgatgcg gtgcatgtag
     1261 accccgccat tctggccatg gccttcgccg cctgcccgca tgcggtcgct gtcagtgatt
     1321 ccatcctcgt cgccgggctg gaaccgggcg aaacaaggca attcggcggc gctccggcca
     1381 cgctcgggcc ccaaggggct gggctgcggc cggacgggac catcgccggg gcgggcatca
     1441 ttctcgatga ggggctgcgc cggctcatcc aggccggcgt ggccccggag accgccttcg
     1501 ccgccgccac ctcccgcccc gccgcggcgc tgggcctggg cgatcgcggc cgcctcgccc
     1561 ctgggctgcg cgcggacctg gtgtggtgga gcgatgattt cacgccgctg caaagctgga
     1621 caggcggcgt cagcctggcc ccgcccgcgc ggccgcgcgg cactgaggcg gcacgggagg
     1681 agctggccga cctcgatgag cgccccacaa tcggcatcgt gcaggccttc ctggcccagg
     1741 agcaatcggc gcagcgtgcg ctgggcaatg ccgcccctgt tctggccgag ctggcagagg
     1801 cggtggcgac gaagctgcgg gatggcgggc ggctattcta tgccggggcg ggcacgtccg
     1861 gacggctcgg gctgctcgat gcggtggaat gcgcgcctac attcggcatc caggacgggc
     1921 tgatcgttcc gctgctggcg ggcggccagg gcgccttcat caaggccgtg gaaggggccg
     1981 aggatgacga ggcggcggcc cgcgccgcgc tggacgagca cggcttctgc gccgacgacg
     2041 cgctggtggg catcgccgcg tcgggcacca cgcctttcac cctggcggct ttgcgccagg
     2101 cgcgggcgct gggcgggctg acaggcgcca tcgtcaataa tccgcatacg ccgatggcgg
     2161 aggcggccga tattcccgtg gaattgctga cgggcgcgga aatcatcgcc gggtccacgc
     2221 gcctttccgc cggctcggcg cagaaaatcg cgctcaatat cctgtcctct attgtgatga
     2281 tccggctggg caagacctat ggccccttca tggtggatat gcgcgccagc aacgccaagc
     2341 tgcgccgccg tgccatgcgc atgctgcaat ccataaccgg cgcaagcgaa caggacgccg
     2401 cccttgcact caccgcgtgt aatatgcatg ttaagcgcgc ggccttgatg ctgttgcgca
     2461 aaatttccgc tgccgaggcg gaacaggcgc tggcggcgtc ttcgggttca ctgcgccgcg
     2521 ccctccgggg gtaacggcgc atagagacgg atgcataaag actgacgaat aaagacggga
     2581 tggaacacca ggagtcttcg atcaggggat tttaagtgtc tgacaggtcg ggcaaaatcg
     2641 tcggcttcgc gcgcaaactc gatgatttca tcatcgacaa tgtgctgcag cccggcgtca
     2701 accgggccga ctggcatctc ggcatcgacc tgcataatct ggcgcggctc tgcgccgtgt
     2761 tgggcgccgg ggccgggctc atctgggtac atggctatga caggccctat tccgccgatt
     2821 tctggcagga tctgttctgc ctgctggtga tgtccagcgc cgccttcctg caaatccgcg
     2881 ccaatgaggc gagcgcgccg cgccgcgccg ccctcgcccc cgcggcgcgt ctcaccgggc
     2941 tgctttggcg cagcctttgg ctggccgacc tggcgctgct gccctcgcaa tggccggtgg
     3001 aggcgcatgg cgagctgctc ggcaatttcg cctggaccgt gctgctggtg cttccctatt
     3061 ggatcatctg ctgccgcacc gtccccccgc ccgagcgccg cctggcgggc gaattgcgct
     3121 acgccaccat tccggtgcag tgagggaaaa tatcccgttt tgggaggagg aaaggccagg
     3181 gctctgccct ggacccgtcg gggcctgagg ccccggaccc ccgataggtt taggattgaa
     3241 aaagggccct gcctccgtgc cgcgaaacgg cttggtggca ggcccttttt caaaccttaa
     3301 aagctaatgg ggtctgggcc tcaggcccag cggggtccag gggcggagcc cctggccttt
     3361 cttcctccca aaacggaaat taccccccct tcgcctcgcg gcggcggcgc gtgagcacga
     3421 actcggtata gccgttcggc tgcgcgcggc cttcgaacac cagctcgcac gcgcccttga
     3481 aggccgggcc gtcataagcg ggggccatgg gcttgtaggc ggggtcgtcc gcattctggc
     3541 ggtccaccac cagcgccatg cgcttcagcg tctccagcac ctgggcctcg ctcaccacgc
     3601 catgatgcag ccagttggcg atatgctgcg aggagatgcg caaagtggcg cggtcttcca
     3661 tgagcccgac atcatggatg tccggcactt tcgagcagcc cacgccctgg tcgacccagc
     3721 gcaccacata gccgagcagc ccttgcgcgt tattgtcgag ttcctgctgg atttcctcgg
     3781 ctttccaatt gatgccgtgg gcgagcggga tggtgagcag gtcggaaagt ttcgcgggtg
     3841 ggcgggcgcg cagctcttcc tggcgggcga acacatccac ctggtggtaa tgcgtcgcat
     3901 gcagcgtggc ggcggtgggc gagggcaccc aggcagtgtt ggcgccggcg cggggg
//
LOCUS       DASQCV010000397         2160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_750634, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000397 DASQCV010000000
VERSION     DASQCV010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_750634"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            39..410
                     /locus_tag="VEQ16_06015"
     CDS             39..410
                     /locus_tag="VEQ16_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012567378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYP63421.1"
                     /translation="MLDHVTLKVSDLKTSLAFYTAALKPLGISSLYGDGKYYAGFGIA
                     PKAFFWIGQSKEPVTGTHVAFAAADHTRVDAFHAAALAAGAKDNGKPGLRPHYHKDYY
                     GAFVLDPDGHNIEAVCHLPVR"
     gene            complement(521..1162)
                     /locus_tag="VEQ16_06020"
     CDS             complement(521..1162)
                     /locus_tag="VEQ16_06020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012225451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HYP63422.1"
                     /translation="MRPPKNDRQRQNRRRGFDDDNFFGNTLPPPSFSGFGATSFAPEA
                     KATVKWYNPDKGFGFVEMSDGSGDVFLHANSLQNAGYQAVTPGSILTIRVGQGQKGRQ
                     VDQVISVVEGEPPPRGAGGPGGGGGFDRPRGPRPPRQQASGPAVEMAGVVKWYNATKG
                     FGFISPQSGGKDVFVHATALEAAGLSPLQEGQAVKMSVVQGAKGPEVSAISLD"
     gene            complement(1245..1400)
                     /locus_tag="VEQ16_06025"
     CDS             complement(1245..1400)
                     /locus_tag="VEQ16_06025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63423.1"
                     /translation="MSVNVRGAHGRGGILGGQERAVDGVFVSTGKTYKNDSEFAGLAR
                     AGTLFQD"
     gene            1443..>2160
                     /locus_tag="VEQ16_06030"
     CDS             1443..>2160
                     /locus_tag="VEQ16_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYP63424.1"
                     /translation="MSFPIQIPALLRALEARGYQEPTPVQQAVLVPEAADRDLLVSAQ
                     TGSGKTVAFGLAIAPTLMGENEILPATHNPLALVIAPTRELALQVHAELSWLYEYAGG
                     RILSCVGGMDARREARHLAAGCHVVVGTPGRLQDHIERGNLKLDELEAIILDEADEML
                     DLGFRDELEFILSAAPATRRTLLFSATIAKEIAALARQYQHNALRIDTVARNQPHADI
                     EYRAVRIVPGDVEHAVVNVLR"
BASE COUNT          424 a          774 c          588 g          374 t
ORIGIN      
        1 gccgccggcg tcggaaggat caacagcgga gcgctctgat gctcgaccat gtcaccctga
       61 aagtctcgga cctcaaaact agcctcgcct tctacacagc ggccctcaaa ccactcggca
      121 tctccagcct ctatggcgac ggcaaatatt acgccggctt cggcattgcc ccaaaagctt
      181 tcttctggat cggccagagc aaagagcccg tcaccggcac ccatgtcgcc ttcgccgccg
      241 ccgaccatac cagagtggat gccttccacg ccgccgccct cgccgccggc gccaaagaca
      301 acggtaagcc gggtctacgc ccgcattatc ataaggacta ttatggcgcc ttcgtgctgg
      361 atcccgacgg ccataatatc gaggctgtct gccacctgcc tgttaggtaa agtttgcgcc
      421 tcggcgtgaa gccgtactca agcaccgttt cgatggctca ggcgcggccg gcacaaaaaa
      481 aagccccgct tgcgcggggc ttttccgggt caaacccaaa tcaatccagg ctgatcgccg
      541 aaacttccgg ccccttggcc ccctgcacga cactcatctt caccgcctgc ccttcctgca
      601 gcggggaaag acccgccgcc tcgagcgcgg tcgcatgcac gaacacgtcc ttaccaccgg
      661 actgcgggct gatgaagccg aagcccttag tggcattgta ccatttcacc acaccggcca
      721 tctccacggc cgggccgctc gcctgctggc ggggcggacg gggtccgcgc ggacggtcga
      781 aaccgccgcc gccaccaggg ccaccagcgc cacgcggcgg gggctcgccc tcgaccacgg
      841 aaatcacctg gtcaacctgc cggcctttct ggccctgccc gacgcggatg gtcaggatgg
      901 aacccggcgt caccgcctgg tacccggcat tctgcaggga attggcatga aggaacacat
      961 caccggaccc gtcggacatc tcgacgaacc caaacccctt atcaggattg taccatttca
     1021 ccgtggcctt ggcctccggt gcgaaagagg tggccccaaa cccggaaaag gacgggggag
     1081 ggagcgtgtt gccaaagaag ttatcgtcgt caaagccgcg acgacgattc tgccgctggc
     1141 ggtcgttttt ggggggtcgc actataaaaa cagtccttca ataaacatgc ggatcacctg
     1201 gcagagcccg gcgggagcca gcatagggca gcatcgtctc gccttcaatc ctgaaacaac
     1261 gtcccggcgc gcgcaagccc cgcaaattcg ctgtcatttt tgtaagtttt tcctgttgaa
     1321 acaaaaacgc catcaaccgc ccgctcctgt ccgcccaaaa tcccgcccct gccgtgcgcc
     1381 ccgcgcacgt tgacgctcat caaccgccca gcctaagagg gccgtttccc gaaagatccc
     1441 acatgagctt ccccatccag atcccagccc tcctccgcgc gctcgaagcc cgcggctatc
     1501 aggagcccac gccggtgcag caggctgttc tggtaccgga agctgccgac cgcgacctgc
     1561 tcgtttccgc ccagaccggc tcgggcaaaa cggtcgcctt cggcctcgcc atcgccccca
     1621 ccctcatggg cgaaaacgaa atactccccg ccacccataa tccgctggcc ctggtcattg
     1681 cccctacgcg cgagctggca ttgcaggtcc atgccgagct gagctggctc tatgaatatg
     1741 caggcgggcg catcctgtcc tgcgtcggcg gcatggatgc aaggcgcgag gcgcgccatc
     1801 tcgccgcggg ctgccatgtc gtcgtcggca cgcccggccg gctgcaggac catatcgagc
     1861 gcggcaatct caagcttgac gagctggaag ccatcatcct cgacgaagcc gacgaaatgc
     1921 tcgatctcgg tttccgcgac gagctggaat tcatcctctc cgctgctccg gccacacgcc
     1981 gtacgctgct gttttccgcc accatcgcga aagaaatcgc cgcgctggcg cgccaatatc
     2041 agcacaacgc cctgcgtatc gacacagtgg cccgcaacca gcctcatgcc gatatcgagt
     2101 accgcgccgt ccggatcgtc ccgggcgatg tcgagcacgc cgtcgtcaac gtattgcgct
//
LOCUS       DASQCV010000398         1520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2575579, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000398 DASQCV010000000
VERSION     DASQCV010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2575579"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VEQ16_06035"
     CDS             <1..311
                     /locus_tag="VEQ16_06035"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HYP63425.1"
                     /translation="ARLRGFEWDAILGAELVRHYKPDREVYVSAYDFLALKPHEVMMC
                     AAHIYDLQAARSADLRTGFIHRPNEYGTGPVGTPDKASPGDFDVVSSSIVDLAQQMGA
                     "
     gene            465..>1520
                     /locus_tag="VEQ16_06040"
     CDS             465..>1520
                     /locus_tag="VEQ16_06040"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63426.1"
                     /translation="MKIVVADKISERGFALLREAGWDVVSPAAGALAQELATADGLVV
                     RSATKVTAELLEQAPKLRVVGRAGVGVDNIDVEAATHRGILVMNTPGGNAVSVAEHTF
                     ALMLAMARSVPQSNASIHAGRWEKSGAAGTELRGKTLGLVGLGRVGTEVARRARALEM
                     KVLAHDPYVTAAAAREVEVELLPLDELMKCADVISLHTSLSPATEKMLGAAAFAKMKR
                     GARLVNCARGELIDEAALAEALKSGQLAAAAVDTFAEEPPKNSPLIGLPNLIATPHIA
                     GSTVEAQEEVGTAVAQQVRDYLADGLIRNAVNMPAMSPEQYRRLRPYIDLGERLGALI
                     AQAAPSPSFSRVRIRYAG"
BASE COUNT          267 a          401 c          593 g          259 t
ORIGIN      
        1 tcgcccgctt gcgcggtttc gagtgggacg ccatcctggg cgccgaactc gtgcgccact
       61 acaagcccga ccgcgaagtc tacgtctcag cttacgattt tctcgccctg aagccgcacg
      121 aagtgatgat gtgcgccgcc cacatctacg acttgcaggc cgcccgcagc gccgaccttc
      181 gcaccggctt catccaccgc cccaacgaat acggcaccgg ccccgtcggc accccagaca
      241 aagcatcccc cggagatttt gacgtagtct cctcaagcat tgtcgatcta gcccagcaga
      301 tgggcgcctg aaatcaaata gcgcgccacc gattttgccg tcgccgtcca gtggccagga
      361 cgggtccttc gtggccttag ggcaagcggg cccttcgtgg cctcaagtca agcgaggagt
      421 aatgctagac tggcaggctt gcaaaaaaag gtgatgaagc tgacatgaag attgtggtgg
      481 cggacaagat cagcgagcgc gggttcgcgt tgttgcgcga ggcggggtgg gatgtggtgt
      541 cgccggcggc gggcgcgctg gcgcaggaac tcgcgacggc ggatgggctt gtggtgcgca
      601 gcgcgacgaa ggtgacggcg gagttattgg agcaggcgcc gaagttgcgc gtggttgggc
      661 gcgcgggagt gggcgttgac aatattgacg tggaggcggc gacgcatcgc ggcattttgg
      721 tgatgaacac gccgggggga aacgcggtga gcgtggcgga gcacacgttt gcgctgatgc
      781 tggcgatggc gcggagcgtg ccccagtcga acgcgtcgat acacgcgggg cgatgggaga
      841 aatcgggcgc ggcggggacg gagttgcgtg ggaagacgct ggggctggtg ggactggggc
      901 gcgtgggcac ggaagtggcg cggcgggcgc gagcgctcga gatgaaagtg ctggcgcatg
      961 atccgtatgt gacggcggcg gcggcgcgcg aggtggaagt ggagctgcta ccgctcgacg
     1021 agctgatgaa gtgcgcggac gtgatttcct tgcacacgtc gctgagcccg gcgaccgaga
     1081 agatgttggg cgcggcggcg ttcgcgaaga tgaagcgcgg ggcgcggctg gtgaattgcg
     1141 cgcggggcga attgattgac gaggcggcgc tggcggaggc gttgaaatca gggcagcttg
     1201 cggcggcggc ggtggatacg tttgcggagg agccgccgaa gaattcgccg ctgattggac
     1261 tgccgaatct gatcgccacg ccgcacattg cggggtcaac tgtggaggcg caggaagaag
     1321 tgggcacggc ggtggcgcag caggtgcggg attatctggc ggacgggttg attcgcaacg
     1381 cggtgaatat gccggcgatg tcgccggagc agtatcggag gctgcgtcct tatattgatc
     1441 tgggcgagcg gctgggagcg ctgattgcgc aggcggcgcc gtcgccgagt ttcagccggg
     1501 tgcggatccg gtatgcgggg
//
LOCUS       DASQCV010000399         1736 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2077838, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000399 DASQCV010000000
VERSION     DASQCV010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2077838"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..835
                     /locus_tag="VEQ16_06045"
     CDS             <1..835
                     /locus_tag="VEQ16_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008853028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HYP63427.1"
                     /translation="DLLREVNLGGTAIGTRINADPGYGRIAIAILSEISDVSLVQSGN
                     LVEASWDMGAFVMVSGVLKRSATKLSKIANDLRLLSSGPRGGFGEITLPPRQPGSSIM
                     PGKVNPVIPEMVNLVCFQIIGNDLAITMAAEGGQLQLNAFEPLIAHNMLDSIRLLRNA
                     VETLRKFCVEGIQANPEACLQHLEASTATATALVPHIGYERAAELAKRALREGTTVRA
                     LAEKQLPGIDLDKVLNPETLAGVRAKYQPDLAKRRAAVAPVGENGPGALQQEAGNIRD
                     Q"
     gene            complement(945..>1736)
                     /gene="hutU"
                     /locus_tag="VEQ16_06050"
     CDS             complement(945..>1736)
                     /gene="hutU"
                     /locus_tag="VEQ16_06050"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016153 - urocanate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006548 - histidine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HYP63428.1"
                     /translation="QAVERAARHSMAMHVRAMLEFVKRGVPTFDYGNNIRQVAKEEGV
                     ADAFNFPGFVPAYIRPLFCRGIGPFRWAALSGDPEDIYKTDAKVKELLPDHKHLHHWL
                     DMAKERISFQGLPARICWVGLGDRHRLGLAFNEMVAKGELSAPIVIGRDHLDSGSVAS
                     PNRETEAMMDGSDAVSDWPLLNALLNCASGATWVSLHHGGGVGMGFSQHAGMVICADG
                     TPEAAARLARVLWNDPATGVMRHADAGYGIARDCAREFGLDLPSL"
BASE COUNT          329 a          564 c          555 g          288 t
ORIGIN      
        1 ggacctgctg agggaggtga atctcggcgg cactgccatc ggcacacgca tcaacgccga
       61 cccgggctat gggcgcatcg ccatcgccat cttgtccgag atcagtgatg tctcgctggt
      121 gcagtcggga aacctcgtgg aagcgagctg ggacatgggg gccttcgtga tggtctcggg
      181 cgtgctcaag cgcagcgcca ccaagctttc gaaaatcgcc aatgacctac ggcttttatc
      241 ttcagggccg cgaggaggct ttggggaaat cacactgccg ccgcgccagc ccggctcttc
      301 catcatgccg gggaaggtga atccggtcat tccggagatg gttaatctcg tctgcttcca
      361 gatcatcggc aatgatctcg ccatcacgat ggcggccgag ggtgggcaat tgcagctcaa
      421 cgccttcgag cccctgattg cgcataatat gctcgatagc atccggctgc tgcggaatgc
      481 ggtggagact ttgcgcaaat tctgcgtgga gggaatacag gcgaacccgg aagcgtgcct
      541 gcagcatctg gaagccagca ccgcgacggc gaccgcgctg gtgccgcata tcggctacga
      601 acgcgcggcc gaactggcga aaagagccct gcgtgagggt acgaccgtgc gcgcgcttgc
      661 ggaaaagcag cttcctggca tcgatctcga taaagtcctg aatccggaaa cccttgcggg
      721 tgtccgggcc aaatatcagc ccgacctagc aaagcgccgg gcggcggtcg cgccggtagg
      781 ggaaaacggg cccggcgcgc tccagcagga agcgggaaat atccgtgatc agtagcgctt
      841 ctatcccgcc tatcgcggct cagcgcagcc gggtaccggc gccgcatagg ctgtgcgaaa
      901 cgcttcagcc cgcggacgcg gcgcgggctg ttcgggcgct ctggttacag cgagggcagg
      961 tccaacccga attccctagc gcagtccctg gcgatgccgt agcccgcgtc cgcatggcgc
     1021 atcacgccgg tcgccgggtc gttccacagc acgcgcgcca gccgcgcagc ggcttccggc
     1081 gtgccatcgg cgcagatgac catgcccgca tgctgcgaga aacccatgcc cacaccgccg
     1141 ccatggtgca gcgagaccca ggtggcgcca gaggcgcaat tgagcagcgc gttcagcaac
     1201 ggccagtcgg acaccgcatc agacccatcc atcatcgcct ccgtctcgcg gttgggcgag
     1261 gcgacggagc cggaatccaa atggtcccgc ccgatcacta tgggggcgga aagttcgccc
     1321 ttggccacca tctcgttgaa ggcaaggccc agccggtgcc ggtcccccag ccccacccag
     1381 cagatgcgcg cgggcaggcc ctggaaggag atgcgctctt tcgccatgtc cagccagtga
     1441 tgcagatgct tgtggtccgg cagcaactcc ttcaccttgg cgtcggtctt gtagatatcc
     1501 tccgggtcgc ccgagagcgc cgcccagcgg aaggggccga tgccgcggca gaagagcggg
     1561 cggatatagg ccggcacgaa gccggggaag ttgaacgcat ccgccacccc ttcttccttc
     1621 gccacctggc gaatattatt gccataatcg aaggtcggca ccccgcgctt gacgaattcc
     1681 agcatggcgc gcacatgcat ggccattgaa tggcgcgccg cgcgctccac agcctg
//
LOCUS       DASQCV010000400         1897 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3238802, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000400 DASQCV010000000
VERSION     DASQCV010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1897
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3238802"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..713
                     /locus_tag="VEQ16_06055"
     CDS             <1..713
                     /locus_tag="VEQ16_06055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63429.1"
                     /translation="IGNGSTEVGLLVPDGLARIGILPFEALPASRREAATLIGWNLRD
                     GLPFPPEEARIAYQLLPKSEADRTELVAVAARASVLKEYESLFEEVNRSSSLLLPTTL
                     ALLPLLHEAEDAVLLIHAYGNAATLAVVAGRHLRFWRTRDFERLEPKELLAQIGAEAA
                     RVLASSADRLGISIESVRLCARPPAGNEWVGELAQILGCKVNALEPAAGAGGLLAAEE
                     RSLLGRYGATLAGLAANR"
     gene            727..1416
                     /locus_tag="VEQ16_06060"
     CDS             727..1416
                     /locus_tag="VEQ16_06060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63430.1"
                     /translation="MKITLNLTLSQSFRQRHRLAWSVPVALIALALLWRLVFSMRYDW
                     HQYWSARQAVDREQARLGQLAARQADLQRKLDRPENRALLREVQFVNFLIEQRQLSFA
                     ELAAKVTALLPPQARLATLSLPDSSGDPLVHFGIEGTTEDAVETFLNNLEESPDFSEV
                     MVTNQGFEEKGTGAPVSIACTARYVGGRTGVAEPQAAAAVSAAANVTPVASPPVLSIP
                     AAGAKGNAAKK"
     gene            1452..>1897
                     /locus_tag="VEQ16_06065"
     CDS             1452..>1897
                     /locus_tag="VEQ16_06065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63431.1"
                     /translation="MIEIVALSLAGLDLVVYLAVARPLSSAVAAKQQAFSAARRNIRM
                     SEVRLAKLSQSLAALPSTDEDIKQFLNDHVPPRRRGFSRAAGLVRQITGDSGVQITGV
                     GYRLETQRKEPLQRLGIQVNVHGQFQNLLRFTHALETAKDFVLVRGL"
BASE COUNT          318 a          577 c          642 g          360 t
ORIGIN      
        1 ggatcggcaa cggcagcacg gaggtcggcc tgctggtgcc ggacggtttg gcgcgaattg
       61 gtattctgcc gtttgaagcg cttccggcga gccggcgcga ggcggctacg ctgatcggat
      121 ggaacctgcg cgacggcctg cctttccccc ctgaggaagc gcggatcgcc taccagctct
      181 tgcccaagtc ggaggcggat cgaacggaat tggtggcggt ggcggcccgc gcatcggtgc
      241 tcaaggagta tgagtcgttg tttgaggagg tcaaccggtc gagttcgctg ctgctgccaa
      301 ccaccctggc gcttcttccc cttcttcacg aagcagaaga cgctgttctg ctgattcatg
      361 cttacggcaa cgcggccact ctggcggtgg tcgcggggcg gcacctgcgc ttctggcgga
      421 cgcgcgactt cgaacggctg gaacccaaag agcttcttgc ccagatcggc gcggaagcgg
      481 cgcgggtgct ggcatcatcg gcggatcggc tcggcatctc cattgagagc gtccggctgt
      541 gcgcccgccc gccggcggga aacgagtggg tcggggaact cgctcagatt ctgggctgca
      601 aagtcaacgc tctcgagccg gccgccggtg ccggaggact gcttgcggcc gaagaacggt
      661 ccctgctcgg ccgttacggc gccaccctgg cgggcctcgc ggccaatcgc tgacggaaag
      721 cgcagtatga agatcacgct gaatctgaca ctctcgcaga gttttcgtca acgccaccgg
      781 ctggcgtggt ccgtgcccgt cgcgctcatc gccctggcgc tgctctggcg cctggtgttt
      841 tccatgcggt acgactggca tcagtactgg tcggcgcgcc aggcggtgga ccgggaacaa
      901 gcaaggctcg gccagctggc cgcgcgccag gctgatctgc aacggaagct ggatcgtccc
      961 gagaatcgcg ctctgcttcg cgaggtgcag ttcgtgaact tcctgattga acagcggcaa
     1021 ctttccttcg ctgagctggc cgccaaagtg acggctctgc tgcctccgca ggcgcgcctc
     1081 gcgaccctga gcctgcctga cagctcgggc gacccgctgg ttcactttgg catcgaaggg
     1141 accactgagg acgcggtgga gactttcctg aacaacctgg aagaatcgcc ggactttagt
     1201 gaggttatgg ttaccaatca gggcttcgag gagaaaggta cgggcgcgcc ggtgagcatt
     1261 gcttgtacgg cccgttatgt cgggggccgc acgggcgtcg cggagccaca ggcggcggcc
     1321 gccgtctccg ccgcagccaa tgtgaccccg gttgcctctc caccggttct ctcaataccc
     1381 gccgccggcg cgaagggcaa cgcggcgaag aaataactat ggcgaggttc aggcgcaaga
     1441 aggttgagcg ggtgatcgag atcgtggctc tcagcctcgc cggccttgat ctggtcgtgt
     1501 acctggcagt ggcgcgtccg ctgtcgagtg ccgtggcggc caagcagcag gcgttctcag
     1561 ccgcgcggcg gaatatccga atgtcggagg tgcggctggc caagctttcg cagtcgctcg
     1621 ccgcgcttcc atcaaccgat gaggatatca agcagttcct gaacgatcat gtgccaccgc
     1681 ggcggcgtgg tttttcccgg gccgcaggcc tggtacgcca gatcactgga gattccgggg
     1741 tgcagattac aggagtcggc taccggttgg agactcagcg caaggagcct ttgcagcgcc
     1801 tggggatcca ggtaaatgtt cacggacagt ttcagaacct gctacgcttt acgcatgcct
     1861 tagaaacggc caaggacttt gtgctggtgc ggggcct
//
LOCUS       DASQCV010000401         2994 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2576714, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000401 DASQCV010000000
VERSION     DASQCV010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2994
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2576714"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..108
                     /locus_tag="VEQ16_06070"
     CDS             <1..108
                     /locus_tag="VEQ16_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011389261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HYP63432.1"
                     /translation="GKPEEYAQLVQSIVANPMLNGEVIRLDGAIRMPPK"
     gene            105..896
                     /locus_tag="VEQ16_06075"
     CDS             105..896
                     /locus_tag="VEQ16_06075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYP63433.1"
                     /translation="MSEEAPVLLTRENGIARITLNRPKAGNAIDLPLARAFWDAANIV
                     DEDQTIRVVTLTGAGKLFCGGGDVGAFANAGERFSVLLKELTGYIHGAIARLARMDKP
                     LVTIINGPAAGAGFNLSLMGDIAIAAQSAHFTTAYTGIGLTPDGGATWLLPRLVGLRR
                     AQEILLLNKRVSAAEAAEIGMITKMVPDEALAEEAEAIVTKLVDGATRALGRTRNLLN
                     SGAEASLETQLELEARAIAASGRDMEGREGVAAFLAKRKPDFRSQ"
     gene            911..1684
                     /locus_tag="VEQ16_06080"
     CDS             911..1684
                     /locus_tag="VEQ16_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HYP63434.1"
                     /translation="MAYETLLVETHGPVTLVRLNRPQALNALNSHVLADLIAAFAAYD
                     ADHSQRCLVLTGSEKAFAAGADIKEMQPKGFAAMFSENFFAGFERVTATRKPWIAAVA
                     GFALGGGCELAMMADYIIAAENVKFGQPEIKLGVAPGMGGSQRLTRAVGKAKAMQMCL
                     TGRMMDAAEAERASLVAQVVPLENLLEEALKQAQAIADMPPLAAIANKEMVNAAFETG
                     LAHGILFERRLFNGLCATADKQEGMTAFAEKRKGNWQGA"
     gene            1714..2691
                     /locus_tag="VEQ16_06085"
     CDS             1714..2691
                     /locus_tag="VEQ16_06085"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004280300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase family protein"
                     /protein_id="HYP63435.1"
                     /translation="MSLKTRFTELLGIEYPIVQGGMMWVGRAELAAAVSNAGGLGILT
                     ALTQPTPDALRAEIDRCRTMTDKPFGVNLTILPSVNPPPYAEYRQAIIDSGIKIVETA
                     GHKPQEHVDHFKEHGIKVVHKCTAVRHALSAERMGVDAISIDGFECAGHPGEDDIPGL
                     ILIPAAADKVKIPMIASGGFGDGRGLVAALALGADGINMGTRFCATVEAPIHDNVKQL
                     MVKHDERDTNLIFRKLHNTARVGKSAVSDQVVEILNRPEAKFEDVAHLVRGIKGREVL
                     ETGNLDAGLFWAGQVQGLIHDIPTCAELIGRIVREAEEIISGRLRGFVA"
     gene            complement(2740..>2994)
                     /locus_tag="VEQ16_06090"
     CDS             complement(2740..>2994)
                     /locus_tag="VEQ16_06090"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYP63436.1"
                     /translation="APILGVLEALTQPQAVAREMVVETEHKVLGTIPIVNRPIKFPGA
                     PQPAPAAPPVLGEHTDEILRDGLGLTQAQIDGLRALKIVS"
BASE COUNT          554 a         1078 c          900 g          462 t
ORIGIN      
        1 ggcaagccgg aggaatatgc gcagctcgtg caatccatcg tagccaaccc gatgctgaac
       61 ggcgaagtca tccgcctgga cggcgccatc cggatgccgc cgaaatgagt gaggaagcac
      121 cggtcctgct gacgcgcgag aacggcatcg cgcgcatcac cctcaaccgg cccaaggcag
      181 gcaacgccat cgacctgccc ctcgcccgcg ccttctggga tgctgccaat attgtcgacg
      241 aggaccaaac catccgcgtc gtcaccctta ccggcgccgg caagctgttc tgcggcggcg
      301 gcgatgtcgg cgccttcgcc aatgccggcg agcgcttctc cgtcctgctg aaagagctga
      361 ctggctatat acacggcgcc atcgcccgcc ttgcgcgcat ggacaagccg ctggtcacca
      421 tcatcaatgg gccggcagct ggcgcggggt ttaatctctc gctcatggga gacatcgcca
      481 tcgccgccca atccgcgcat ttcaccacgg cctatacggg catcggcctc acgccggatg
      541 gcggcgccac ctggctgcta ccgcgcctcg tcggcctgcg ccgcgcccag gagattctgc
      601 tcctcaacaa gcgcgtctcc gccgccgagg ctgcagagat tggcatgatc acgaaaatgg
      661 tgccggacga ggcgctggcc gaagaggccg aagccatcgt gaccaagctg gtggacggcg
      721 ccacgcgcgc tctgggccgc acccgcaacc tgctgaatag cggcgcggaa gcctcactgg
      781 aaacccagct ggagctggaa gcccgtgcca tcgccgcctc gggccgcgat atggaagggc
      841 gcgagggcgt cgccgccttc ctcgccaagc gtaaacccga ttttcgttcc caataatctg
      901 gagattgacc atggcttatg aaaccctgct cgtcgaaacc cacggccccg tcaccctggt
      961 gcgcctcaac cgcccgcagg cgctgaacgc gctgaacagc cacgtgctgg ccgacctcat
     1021 cgccgccttc gccgcctacg atgctgacca cagccagcgc tgcctggtgc tgacgggcag
     1081 cgaaaaagcc ttcgccgccg gcgcggacat caaggaaatg cagcccaaag gcttcgccgc
     1141 catgttcagc gaaaatttct tcgccggctt cgagcgcgtc accgccaccc gcaagccctg
     1201 gatcgccgcg gtcgccggct tcgcgctggg cggcggctgc gagctggcca tgatggcgga
     1261 ctacatcatc gccgccgaga acgtgaaatt cggccagccc gagatcaagc tcggcgtcgc
     1321 ccccggcatg ggcggctcgc agcgcctgac gcgcgccgtg ggcaaggcca aggccatgca
     1381 gatgtgcctc accggccgca tgatggatgc cgccgaggcc gagcgcgcca gcctggtcgc
     1441 ccaggtggtg ccgctcgaaa acctccttga agaagcgctg aagcaggccc aggccattgc
     1501 cgacatgccg ccgctcgccg ccatcgccaa caaggaaatg gtcaatgccg cgttcgagac
     1561 cggccttgca cacggcatcc tgttcgagcg ccgcctgttc aacgggctgt gcgccacggc
     1621 cgacaagcag gaaggcatga ccgccttcgc cgagaagcgc aaaggtaact ggcagggcgc
     1681 gtgatcagcc ctcgccgaca ggagaatttt ttcatgtcgt tgaagacccg tttcaccgaa
     1741 ctactgggca tcgaatatcc catcgtgcaa ggcggcatga tgtgggtggg ccgtgccgag
     1801 ctggccgccg ccgtctccaa cgctggcggc ctcggcatcc tcaccgccct cacacaaccc
     1861 acgccggacg cgctgcgcgc cgaaatcgac cgctgccgca ccatgacgga caagcctttc
     1921 ggcgtgaacc tcaccattct gccgtcggtc aacccgccgc cctacgcgga ataccgccag
     1981 gcgatcatcg atagcggcat caagatcgtg gaaaccgccg gccacaagcc gcaggagcat
     2041 gtcgaccatt tcaaagagca tggcatcaag gtcgtgcata aatgcaccgc cgtgcgccac
     2101 gccctctccg ccgagcgcat gggcgtggac gccatctcca tcgacggctt cgagtgcgca
     2161 ggccaccccg gcgaggacga cattcccggc ctcatcctca tccccgccgc ggccgacaag
     2221 gtgaaaatcc ccatgatcgc ctccggcggc tttggcgatg ggcgcggctt ggtcgcggcc
     2281 ctggcgctgg gcgcggacgg catcaatatg ggcacgcgct tctgcgccac cgtcgaagcg
     2341 ccgatccatg acaacgtcaa gcagctcatg gtgaagcatg atgagcgtga caccaacctc
     2401 atcttccgca agctgcacaa cacagcgcgc gtcggtaaat ccgcggtctc cgaccaggtg
     2461 gtggaaattc tcaaccgccc ggaagccaag ttcgaggacg tcgcccatct cgtgcgcggc
     2521 atcaagggcc gtgaggtgct ggaaaccggc aatctcgacg ccggcctgtt ctgggccggc
     2581 caggtccagg gcctcatcca cgacatcccc acctgcgccg aactcatcgg ccgcatcgtc
     2641 cgcgaggcgg aggagatcat ctcggggcgg ctacgcgggt tcgtggcgtg actcgcaggg
     2701 gcctttgccc ctgcactcca cgccccccct caaacgcccc tacgagacga tcttcagcgc
     2761 ccgcagcccg tcgatttgag cctgcgtcag gccaagccca tcgcgcaaaa tctcatccgt
     2821 atgctccccc agcacaggcg gcgcggctgg cgccggctgc ggcgcacccg gaaacttgat
     2881 cggccggttc acgatgggga tggtccccag caccttgtgc tccgtctcca ccaccatctc
     2941 ccgcgccacg gcctgcggct gggtcagcgc ctccagcacg cccaggatcg gcgc
//
LOCUS       DASQCV010000402         5359 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1085200, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000402 DASQCV010000000
VERSION     DASQCV010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5359
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1085200"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..300)
                     /locus_tag="VEQ16_06095"
     CDS             complement(<1..300)
                     /locus_tag="VEQ16_06095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015072204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HYP63437.1"
                     /translation="MSFSISSPAAQRVAEIMASEPGAKALRVEVLAGGCSGLQYKFDL
                     TAEQAADDVVVTREGATVLVDPVSLEFLEGAELDFIDNLMGAHFAVKNPNATSSCG"
     gene            361..1500
                     /locus_tag="VEQ16_06100"
     CDS             361..1500
                     /locus_tag="VEQ16_06100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016793 - triphosphoric monoester
                     hydrolase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HYP63438.1"
                     /translation="MEKAPYAVWESRGRCHQQPDSDDRSPWQRDRDRVVHCSAFRKLQ
                     YKTQVFVTRDGDFYRTRLTHSLEVAQVARSLARALRLDEDLTECLALAHDLGHPPFGH
                     AGETGLDEGLKAFGGFDHNDQSFRVVTQLERRYAAFDGLNLSWETLEGLAKHNGPLRN
                     PPPSITAYDAHTPLDLGRQTSAEAQVAAFADDIAYNTHDLDDGLRAGLFTFDDILTLP
                     VIGGLLRHAQSLSNEQNRIRHELSRAVINTLVHDALAESRARLGALAPQSADDIRAAD
                     RAVIGFSEEMRQANIKLKQFLFTRMYRHWRVNRQTHKARHVTKTLTTLLLAHPELLPD
                     DWRERAGKAGNTLQAAELVRDYVAGMTDRYALDEFSRLTDPAVPA"
     gene            1509..3248
                     /gene="argS"
                     /locus_tag="VEQ16_06105"
     CDS             1509..3248
                     /gene="argS"
                     /locus_tag="VEQ16_06105"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HYP63439.1"
                     /translation="MLEENLFAALRGIVLDEFATLAPGLGAEILARIEVTPTKDTAHG
                     DMACNAAMIAAKPTAKNPRELAAALVERLVARPEIARAEAAGPGFVNLTLAPELLLKQ
                     IPVILNAEEAYGQGKAQRGKINVEYVSANPTGPLHVGHCRGAVVGDALANLLKKAGYG
                     VTKEFYINDAGAQVIALARSAYVRYLEALKLSPEAYIETVSGGLQYGGAYLIPIGEAL
                     AAEYGDQFAEMPEQTWLPTIRDFAVAKMLDLIREDLAALGVVHDVFASERALVENGGV
                     ARGLQILRDKGLIYHGILEPPKGKTPDDWEPREQELFRSTEFGDDVDRPVQKSDGSFT
                     YFANDIAYHADKMARGFNAMIDVWGADHGGYVKRMQAAVKALATDSSARLDVLLCQIV
                     RVMKDGQPYRMSKRAGTFVELRDLIDEIGADAVRFLILMRKSDAQMDFDLNAALAQTR
                     ENPVFYVQYAHARCRSVLRAAPALDAAADLSSLSAPEEQALIRRLITWPRLVEQAAES
                     REPHRVAFFLYELAGDFHALWNAGRDNAHLRFLQEHNPAETAARVALVSATAIVLRSG
                     LAVLGVTPVEEMR"
     gene            3251..4027
                     /locus_tag="VEQ16_06110"
     CDS             3251..4027
                     /locus_tag="VEQ16_06110"
                     /inference="COORDINATES: protein motif:HMM:NF016895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HYP63440.1"
                     /translation="MQQHNDLQDDDGDFFYQPQRAAGQRLDPAITRMALGAGGVTILV
                     ILVAFAWSGFHSGGFGPPPVINPPDLPLRMAPASPGGLVVPGADVPIMSGQDDNSAPP
                     QLAPQGQGPDVAQLDQAAGLNQPPPAPPAAAPAATPPGATATAPAQPGQPASQTAAEP
                     ASATANPPSPVPGVQPPAPAQIQLAAVADEGKAEAAWTQAAQKAPDLLGSKSPIILPA
                     VVNGQSVWRVRVAGFASAADAKNLCAALTAKGVACLVPGP"
     gene            4024..4893
                     /gene="nagZ"
                     /locus_tag="VEQ16_06115"
     CDS             4024..4893
                     /gene="nagZ"
                     /locus_tag="VEQ16_06115"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HYP63441.1"
                     /translation="MTPVTPPVTQPVILGIAGPSLTDDERHLLSDHAPRGIILFSRNI
                     HDQTQLSDLNAELKSLLPPDGILMVDQEGGRVARLRPPHWPALPPAGTLRTAQEAYGH
                     GRELGAMVKAAGFTMTAAPVLDLSIEGANGIIGDRAISGDPAQVALLGGEIARGIMDE
                     GILPVMKHIPGHGRALLDSHLVLPRVAVNDEDDHFPFIRNQNLPWAMTAHIVYEQWDA
                     ERPATISPIVIQQIIRGKIGFKGQLMSDDLAMHALEGTPKERALAALEAGCDVALYCP
                     GEFAGNRQILEAL"
     gene            4890..>5359
                     /locus_tag="VEQ16_06120"
     CDS             4890..>5359
                     /locus_tag="VEQ16_06120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HYP63442.1"
                     /translation="MTGFVLFLLLLLPAMVLHEVAHGTVAHWLGDDTAKNQGRLTLNP
                     LKHIDPFGTIVLPLMLAAGQIATIGHVQFLYGWARPVPVNPLNLQLNGRADPRRLMAI
                     VAVAGPAMNLLLAIAAGFALHGGVAVDYLIFFMEINLIIGIFNLIPVPPMDGGR"
BASE COUNT          926 a         1912 c         1608 g          913 t
ORIGIN      
        1 cccgcatgag gaggtggcat tggggttctt caccgcgaaa tgcgcgccca tgaggttgtc
       61 gatgaaatcc agctcggcgc cttccagaaa ctccaggctc actgggtcca ccagcacggt
      121 ggcaccctcg cgcgtcacca ccacatcgtc cgccgcctgc tcggcggtaa ggtcgaactt
      181 atattgcagc ccggagcagc cgccggccag cacctccacc cgcagcgcct tggcgccggg
      241 ctcgctggcc atgatttccg ccacgcgctg ggcggccgga gacgaaatcg agaaactcat
      301 gccccctata tagcgtcccc taagcttgga ggtaaggccc gcatgggcta gaccggcgcc
      361 atggaaaaag ccccttacgc ggtctgggag tcgcgcggac gctgccacca gcagccggat
      421 tcggatgacc gttccccttg gcagcgcgac cgcgaccgcg tggtgcattg ttccgccttc
      481 cgcaagctgc agtacaagac acaggtcttt gtcacgcgcg acggcgattt ctaccgcacc
      541 cgcctcaccc atagcctgga agtggcgcag gtggcccgct cgctggcccg cgccttgcgg
      601 ctggacgagg acctcaccga atgcctcgcc ctggcgcatg atctcggcca cccgcccttc
      661 ggccatgccg gggaaacggg gctcgatgaa gggctcaagg cgttcggcgg gttcgatcat
      721 aacgaccagt ccttccgcgt cgtcacccag ctggagcgcc gctatgcggc tttcgatggt
      781 ctgaatctct cctgggagac gctggagggg ctggccaagc ataacggccc cctgcgcaac
      841 ccgcccccca gcatcaccgc ctatgacgcg cacacccctc tcgatctcgg ccgccagacc
      901 tccgccgagg cccaggtcgc cgccttcgcc gacgacatcg cctacaacac gcacgacctc
      961 gatgacggcc tgcgcgccgg gctcttcacc ttcgacgaca tcctaaccct gcccgtcata
     1021 ggcgggctgc tgcgccatgc ccaatccctc agcaacgagc agaaccgcat ccgccacgag
     1081 ctgagccgcg ccgtcatcaa cacgctggtg catgacgcct tggccgaaag ccgggcccgc
     1141 ctcggcgccc tggccccgca atcggccgac gacatccgcg ccgccgaccg cgcggtcatc
     1201 ggcttctccg aggagatgcg ccaggccaat atcaagctga agcaatttct cttcacccgc
     1261 atgtaccggc actggcgcgt caaccggcag acccacaagg ctcgccacgt caccaaaacc
     1321 ctcaccacgc tgctgctggc ccaccccgag ctgctgccgg atgactggcg cgagcgtgcc
     1381 ggcaaggctg gcaacaccct gcaggcggcg gagctcgtgc gcgattatgt ggccggcatg
     1441 accgaccgct acgccctgga cgaattttcc cggttgacgg accccgccgt ccctgcctga
     1501 aagcccgcat gttggaagaa aatctgttcg ccgccctgcg cggcatcgtg ctcgacgagt
     1561 tcgccaccct cgcccccggc ctgggcgcag agattttggc gcgcatcgaa gtcacgccga
     1621 cgaaagacac ggcgcatggc gacatggcct gcaatgcagc catgatcgcg gccaagccta
     1681 cggccaagaa cccgcgcgag ctggccgccg ccttggtgga gcgcctcgtc gcgcgccctg
     1741 aaatcgcccg tgccgaagcc gccgggccgg ggttcgtcaa tctcaccctc gcgccggagc
     1801 tgctgctcaa gcagatcccc gtcattctca atgcggaaga agcctatggc cagggcaagg
     1861 cgcagcgcgg caagatcaat gtcgaatatg tctccgccaa ccccaccggc ccgctccatg
     1921 ttggccattg ccgcggcgcg gtggtgggcg atgcgctcgc caatctgctg aaaaaggccg
     1981 gctatggcgt caccaaggaa ttctatatca acgatgccgg cgctcaggtc atcgcgctcg
     2041 cccgctccgc ctatgtgcgc tacctggagg cgctgaaact ttcgcccgag gcctatatcg
     2101 agaccgtgtc cggcgggctg caatatggcg gcgcgtatct gatccccatc ggtgaggcgc
     2161 tggccgctga atatggcgac cagttcgccg agatgccgga gcagacctgg ctgccgacga
     2221 tccgcgattt cgccgttgca aaaatgctgg acctcatccg cgaggacctc gccgccctcg
     2281 gcgtggtgca tgacgttttc gcctccgagc gcgctttggt ggagaacggc ggcgtcgccc
     2341 gtggcctgca aatcctccgc gacaagggcc tgatctatca cggcatattg gagccgccca
     2401 aaggcaagac gccggacgat tgggagccgc gcgagcagga attattccgc tccaccgaat
     2461 tcggcgacga tgtcgaccgc ccggtgcaga aatccgacgg ctccttcacc tatttcgcca
     2521 acgacatcgc ctaccatgcc gacaagatgg cgcgcggctt caacgccatg atcgatgtct
     2581 ggggcgccga ccatggcggc tatgtgaagc gcatgcaggc ggcggtgaag gcgctggcga
     2641 cggacagctc ggcccggctg gacgtgctgc tctgccagat cgtgcgcgtg atgaaggacg
     2701 ggcaaccata ccgcatgagc aagcgcgccg gcaccttcgt tgaattgcgc gacctcatcg
     2761 acgaaatcgg cgcggatgcc gttcgcttcc tcatcctcat gcgcaaatcc gacgcgcaga
     2821 tggatttcga cctcaatgcc gccctggcgc agacgcgcga gaacccggtc ttctacgtgc
     2881 aatatgccca tgcgcgctgc cgctcagtgc tgcgcgccgc gcccgcgctg gatgcagcgg
     2941 ccgatctctc cagcctcagc gcacccgagg aacaggccct catccgccgc ctcatcacct
     3001 ggccgcgtct tgtcgagcag gccgcggaat cgcgtgagcc gcaccgtgtc gccttcttcc
     3061 tctatgagct ggccggggat ttccacgctt tgtggaatgc cgggcgcgac aatgcccatc
     3121 tgcgcttcct acaggagcat aatccggcgg aaaccgcggc gcgcgttgcc cttgtctcgg
     3181 ccacggccat cgtgcttcgc tccggtctag ccgtactcgg cgtcacgcct gtcgaggaga
     3241 tgcgctaggc ttgcaacagc ataacgactt gcaggatgac gatggcgact tcttctacca
     3301 gccgcagcgc gcggcggggc agaggctcga ccccgccatc acgcgcatgg cgctgggggc
     3361 agggggcgta acaatcctcg tcattctcgt ggcgtttgcc tggagcggat ttcatagcgg
     3421 cgggttcggc ccgccgcccg tcatcaaccc gcctgacctg ccgctgcgca tggccccggc
     3481 cagccccggc gggctggtgg tgccaggggc ggatgtgccg atcatgtccg ggcaggacga
     3541 taattctgcg ccgccgcagc tcgccccgca aggtcagggg ccggatgtgg cgcagctcga
     3601 ccaggctgct ggcctgaacc agccgccgcc cgccccaccc gccgctgccc cagccgcaac
     3661 gccaccgggc gccacagcta ccgcgccggc ccagcccggc cagcctgctt cccagactgc
     3721 tgccgagccc gcctcagcca cggccaaccc gccttctccc gtgcctgggg tgcagccgcc
     3781 agccccggcg caaatccaac tcgccgccgt agcggatgag ggcaaggccg aggccgcctg
     3841 gacccaggcg gcgcaaaaag ccccagacct gctagggagc aaatccccca tcattctgcc
     3901 cgccgtggtg aatgggcaga gcgtctggcg cgtgcgcgtg gccggcttcg cctcagccgc
     3961 cgacgccaaa aacctctgcg ccgccctcac cgcgaaaggc gtggcctgcc tggtgcctgg
     4021 cccatgacgc ctgttactcc gcctgtcact cagccagtca ttctcggcat tgccgggccg
     4081 tcccttaccg atgatgagcg ccatctctta agcgaccatg ccccgcgcgg aatcatcctg
     4141 ttcagccgca acattcatga ccagacacaa ctctctgatt tgaacgcaga gttaaaatcc
     4201 ctgctcccgc cggatggcat cttgatggtg gaccaggaag gtggccgtgt cgcccgtctg
     4261 cgcccgcccc actggcctgc tctgccccct gccggcacgc tgcgtaccgc ccaggaggca
     4321 tacggccatg gccgcgaact gggtgccatg gtgaaggcgg ccggcttcac catgaccgcc
     4381 gcacccgtgc tcgatctctc catcgagggg gcgaacggca tcatcggcga ccgcgccatc
     4441 agcggagatc cggcgcaagt ggcgctgctt ggcggtgaaa ttgcccgggg catcatggat
     4501 gagggcattt tacccgtgat gaaacatatc cccggccatg ggcgggcatt gctggatagc
     4561 catctggtcc tgccgcgcgt tgccgtgaat gacgaggacg accatttccc cttcatccgg
     4621 aaccaaaacc tgccctgggc catgacggca catatcgttt atgaacaatg ggatgcggaa
     4681 cgtcccgcca ccatttcgcc gatcgtcatc cagcagatca tccggggcaa aatcggcttc
     4741 aaaggccagc tcatgtccga cgatctcgcc atgcacgcgc tcgaaggcac gccgaaagag
     4801 cgcgccctcg ccgccctgga ggcggggtgc gatgtggcgc tctattgccc cggcgagttc
     4861 gccggcaacc ggcagattct ggaggccttg tgaccggttt cgtcctgttc ctgctcctgc
     4921 tgctcccggc catggtgctg catgaggtgg cgcacggcac cgtggcgcac tggctgggtg
     4981 acgacaccgc caaaaatcag ggaagactca ccctcaaccc gctgaaacat atcgacccgt
     5041 tcggcacgat cgtcctgcca ttgatgctcg ccgctggaca gatcgccacc atcggccatg
     5101 tccagttcct ctatggctgg gcccggcccg tgccggtcaa tccgctgaat ttgcagctta
     5161 atggccgtgc cgacccgcgc cggctgatgg ccatcgtcgc tgtcgccggc ccagccatga
     5221 atctgctcct ggccatcgcc gcgggcttcg ccctgcatgg cggcgtggcg gtcgattatt
     5281 tgatattctt catggagatc aatctcatca tcggcatctt caacctcatc ccggtgccgc
     5341 cgatggatgg cggccgcat
//
LOCUS       DASQCV010000403         1979 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2741825, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000403 DASQCV010000000
VERSION     DASQCV010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2741825"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..153
                     /gene="proA"
                     /locus_tag="VEQ16_06125"
     CDS             <1..153
                     /gene="proA"
                     /locus_tag="VEQ16_06125"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019088471.1"
                     /note="Catalyzes the phosphorylation of L-glutamate during
                     the proline biosynthesis pathway; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-phosphate reductase"
                     /protein_id="HYP63443.1"
                     /translation="ASTQFCDGGEFGFGAEIGIATGRIHARGPIGPEQLTTFRYVVRG
                     TGQVRP"
     gene            156..761
                     /locus_tag="VEQ16_06130"
     CDS             156..761
                     /locus_tag="VEQ16_06130"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HYP63444.1"
                     /translation="MPRFGNRYRQRIGLLGGSFNPAHEGHLHVARQAMAHLRLDQLWL
                     MVSPGNPLKPRASMAPLAERLEAARKIADGRRIIATDIESRLGTRYTADTMRELKRRF
                     PGQKFVWLMGADNLIQLPRWDRWWRILHAMPMLVLPRPGATRRALAARAAKRAQKYRL
                     PARAGLCLATAESPAWILLPVKENPISATELRRKFLEGMKS"
     gene            866..1285
                     /gene="rsfS"
                     /locus_tag="VEQ16_06135"
     CDS             866..1285
                     /gene="rsfS"
                     /locus_tag="VEQ16_06135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003624991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HYP63445.1"
                     /translation="MPGSPRKKAAIAGPKGKKTAPKQPVEQLDRLQAIITTTLEDDKA
                     EEIVVLDLAGRASFADRMIIATGLADRQIAAMATHLEEKLREAGFRKPLTEGAGGTDW
                     VLIDAGDIIVHLFKPEARTLYALEKMWSAELDEAGGA"
     gene            1282..1740
                     /locus_tag="VEQ16_06140"
     CDS             1282..1740
                     /locus_tag="VEQ16_06140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HYP63446.1"
                     /translation="MRLLAIGKAGGKGPEAEIFARYAKRIKPALTLVEFADGVGSAAE
                     IKRREAEALLGALKPGEFLIALDQDGAAPDSVAFSRLLAGWQERSKNLVFAIGGAEGF
                     DAAIIARAGTKLSLGALTWPHMLVRVMLAEQIYRAQMILAGHPYHRAGRP"
BASE COUNT          389 a          625 c          629 g          336 t
ORIGIN      
        1 gcctcgaccc agttctgcga tggcggcgaa ttcggcttcg gggcggaaat cggcatcgcc
       61 accggccgca ttcatgcgcg cggccccatc ggccctgagc aattgaccac cttccgctac
      121 gtggtgcgcg gcaccggcca ggtgcggccc tgacgattcc gcgtttcggc aaccgctaca
      181 ggcaacgtat cggcctgctc ggcggctcgt tcaatccggc gcatgagggg catctgcatg
      241 ttgcccgcca ggcgatggcg catctgcgcc tggaccagct ctggctcatg gtctcgcccg
      301 gcaacccgct gaaaccgcgc gccagcatgg cgccgctggc cgaacgcctg gaagcggcgc
      361 ggaaaatcgc cgatgggcgg cgcatcatcg ctaccgacat cgaatcccgc ctcggcacac
      421 gctacacggc cgacacgatg cgcgagctca agcgccgttt tccggggcaa aaattcgtct
      481 ggctgatggg ggcggataat ctcattcaat tgccgcgctg ggaccgctgg tggcgcattc
      541 tgcacgccat gcccatgctg gtgctgcccc gtcccggcgc cacgcgccgc gcgctcgccg
      601 ctagggctgc gaaacgggcg caaaaatatc gccttccggc gcgtgctggg ctatgccttg
      661 ccacagccga atcgccggcc tggattctgc tgccggtgaa ggagaatccc atctccgcca
      721 cggaattgcg gcggaaattt ttggaaggaa tgaagtcata acccgtccgc cgacccgcaa
      781 gccccccaca aggggtggca aagccgcccc cgccccgcgc aagcgcgccg ccaagagtgc
      841 ggcgcccgcc gaggcgctgc ccgccatgcc cggctcgccc cgcaagaagg ccgccattgc
      901 tggcccgaag gggaagaaga ccgcgcccaa gcagccggtg gaacagctcg accggctgca
      961 ggccatcatc accaccacct tggaggatga caaggccgag gagatcgtgg tgctcgacct
     1021 cgccggccgc gccagcttcg ccgaccgcat gatcatcgcg accggcctcg ccgaccggca
     1081 gattgccgcc atggcgacgc acctggagga gaaactgcgc gaggccggct tccgcaagcc
     1141 actcaccgaa ggcgccggcg gcacggactg ggtgctcatc gatgcgggtg atatcattgt
     1201 gcatctcttc aagccggagg cgcgcacgct ctacgcgctg gaaaaaatgt ggtcggcgga
     1261 actggatgag gccggcggcg cgtgaggctg ctcgccatcg gcaaggcggg gggaaaagga
     1321 ccggaagcgg aaattttcgc ccgctacgcc aagcggataa aacccgcgct gacgctggtt
     1381 gagtttgccg atggggtggg gagcgcggca gagataaaac gccgcgaggc tgaggcactg
     1441 ctgggcgcgc taaaacccgg cgaatttttg attgccctcg accaggatgg agctgcgcca
     1501 gattccgtgg cgttttcccg tttgctggcg gggtggcagg aacggagcaa aaacctggtt
     1561 tttgccattg gcggcgcgga agggtttgat gctgccatca ttgcgcgggc gggcacaaaa
     1621 ttatcgctgg gcgcactcac ctggccgcat atgctggtgc gggtgatgct ggcggaacaa
     1681 atctaccggg cacagatgat cctggcgggg catccgtatc atcgggcagg acggccgtag
     1741 taacaagata tccagcacta ttcgccatac cattggtata tccaagagtt tgccttaatc
     1801 ataacgggac atcccccatg catcaaataa atgacgaaca cgcaaatacg acttccatgc
     1861 gatttcgatt cgacatggtg agattttccg gttagaagag gattgttatc gctctgagcc
     1921 tctacaacga ggaaaccgcg acatgttaac tgacgatgtc atgcgtcaga tgtggccgc
//
LOCUS       DASQCV010000404         3311 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3074970, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000404 DASQCV010000000
VERSION     DASQCV010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3311
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3074970"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..329)
                     /locus_tag="VEQ16_06145"
     CDS             complement(<1..329)
                     /locus_tag="VEQ16_06145"
                     /EC_number="2.3.1.286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sir2 family NAD-dependent protein deacetylase"
                     /protein_id="HYP63447.1"
                     /translation="MMPPSGLQEFVGRHQRLFVLTGAGCSTNSGIPDYRDEEGHWKRT
                     QPMSYQAFMGNPASRQRYWARSMVGWRRFGHAQPNGAHRALARLEAMNKSEILLTQNV
                     DRLHQAAG"
     gene            489..1295
                     /locus_tag="VEQ16_06150"
     CDS             489..1295
                     /locus_tag="VEQ16_06150"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63448.1"
                     /translation="MDLKLAGRRALVTGSSSGIGEAIARMLAQEGCAVVVHGRDRARA
                     EKVAAEIGAAGIALGDLSTDEGASAVHEAAVKALGGNIEILVNNAGGSSTGNTTKSPA
                     EIAIADWISNYNANALSSVRLAQLVLPAMKDATFGRIINVSSAVAVQPNNLGSDYSAA
                     KSALNNFTVSLAGSLKGLSITVNTVSPGIIMVDGLIRFARSKFGDPDMSIEEITSRLV
                     AAKVFDLPPAGRLGTPQDLAIIVCTLASPLSGFVTGANYRVDGGQVRSLN"
     gene            1438..2490
                     /locus_tag="VEQ16_06155"
     CDS             1438..2490
                     /locus_tag="VEQ16_06155"
                     /inference="COORDINATES: protein motif:HMM:NF040257.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63449.1"
                     /translation="MSEKRYRVIQWATGTVGQAALKYFIENPVIDLVGVYVTNPEKVG
                     KDAGDLVGLQKTGVIATNDAEALIAMKADAVLFAAVAGPAAMEPICRLLASGKNVIST
                     AGPFLPNKWFPDDAAKIEAACRAGNSSFHGCGIHPGFSGDILPLTLARLMNRIDCIEV
                     TEIIDKLRNPMIYTEIMGFGADPEELLANPRRSPETYKYFYSSMDMIAKGFGKEIEKV
                     TVKFEVSKAKNDIVHPHGVVKKGMVGGQHYEWTAWVEGAPLIVYHFYWQLGEDLDPLW
                     EVGEAKYRVVIKGDPPLECHLMGGKDADGRHPFLGLPWTGLVGCTVVPQVCDAAPGVV
                     THLDFGVVQPKGLVRR"
     gene            complement(2551..>3311)
                     /locus_tag="VEQ16_06160"
     CDS             complement(2551..>3311)
                     /locus_tag="VEQ16_06160"
                     /inference="COORDINATES: protein motif:HMM:NF013722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MaoC/PaaZ C-terminal domain-containing protein"
                     /protein_id="HYP63450.1"
                     /translation="LEELQFTTENSPGIAQQVLPTFLVLMSAGGSWIPRLGWGEGGNS
                     PVGMVHGEQSVSLVRSIPPQGRVHVSRVLIDVYDKGMGALAVTESRVTLVESGEYLGA
                     ARAALFGQGQGGFGGPRKPADEQPWSRPGRAPDVKVSLPVGLNQSLIYRLLGDRTLHG
                     TDPARAHADGFPRPVFFGMGTFGVAGRAMLKGLCDNDVSRFGTMGGRFSKPVFPGDLL
                     DALIWHTDGGAVFQIWANDERLVFDRGIFRFRGA"
BASE COUNT          632 a         1038 c         1044 g          597 t
ORIGIN      
        1 ccggccgcct gatgcagccg gtcgacattc tgggtcagca ggatctcgct cttgttcatt
       61 gcctccaggc gggcaagggc gcgatgcgcg ccatttggct gagcatggcc gaaacgccgc
      121 cacccgacca tgctgcgcgc ccagtagcgc tggcgggagg ccgggttgcc catgaaggcc
      181 tggtagctca tgggttgcgt gcgcttccaa tggccctctt catcgcgata atcgggaatg
      241 cccgagttcg tgctgcagcc cgcaccggtg aggacgaaaa ggcgctggtg gcggccgaca
      301 aattcctgca atcccgatgg cggcatcatg caggcagctt agcgctggca catgatggct
      361 gccagaggat gccgcggcac tctcccattt gggagtatcc gccgcccggc acccgtggcg
      421 tgatccggca acacctggac gccccgatgg gccagccagg caagaggcaa tgtcacggag
      481 gaaacagggt ggatcttaaa cttgcagggc ggcgggcgct cgttacgggc agcagcagcg
      541 gaatcggcga ggccattgcc cgcatgctgg cgcaagaagg ctgcgcggtg gtggtgcatg
      601 gccgcgaccg cgcgcgggcg gagaaggtcg cggccgagat cggcgcggcc ggcatcgcgc
      661 tcggcgatct ctcgaccgac gaaggcgcat ccgccgtgca tgaggctgcc gtgaaagcgc
      721 tgggcgggaa tatcgaaatc ctcgtcaata atgctggcgg cagctcgacc ggcaatacta
      781 cgaaatcccc ggccgagatc gccatcgccg actggatttc caattataac gccaatgcac
      841 tctcctcagt gcggctggcc cagctcgtcc tcccggccat gaaggatgct acattcgggc
      901 gcatcatcaa tgtctccagc gcggtggcgg tgcagccgaa taatctgggc tctgactatt
      961 ccgccgccaa atcggcgctg aataatttca ccgtcagcct cgccggctcg ctgaaggggc
     1021 tcagcatcac ggtcaacact gtctcgcccg gcatcatcat ggtggatggg ctgatccgct
     1081 tcgcccgcag caaattcggc gacccggata tgagcatcga ggaaatcacc agccggctgg
     1141 tggcggccaa agtgtttgac ctgccgcccg cgggccggct ggggacgccg caggatctcg
     1201 ccatcatcgt ctgcacgctg gcgagcccgc tttccggctt cgtcaccggc gccaattacc
     1261 gcgtcgatgg cggccaggtc cgcagcctca actgagagac tattcgcaaa ctctactctg
     1321 gcggccgcct gacggcgatt tgtctcccgc tccggtgctc aaaaatcatc gccatgcgac
     1381 tcaccagagc gagttttcaa acagtctcta aatgcataac aagaaaggct attgcttatg
     1441 tccgagaagc gttatcgcgt catccaatgg gccaccggca cggtgggcca ggcggcgctc
     1501 aaatatttca tcgagaatcc ggtcatcgat ctggtcggcg tctatgtcac caatccggag
     1561 aaagtcggca aggatgcggg tgatctcgtc ggccttcaaa aaactggtgt gattgccacg
     1621 aacgatgccg aggcgctcat tgccatgaag gccgatgccg tgctgttcgc ggccgtggcc
     1681 ggtcccgcgg cgatggagcc gatctgccgc ctgctggcct cgggcaagaa tgtgatttcc
     1741 acggccggcc cgttcctgcc gaacaaatgg tttcccgatg atgcggcgaa aatcgaggcg
     1801 gcctgccgcg cgggcaacag ctccttccat ggctgcggca tccatccggg cttttccggt
     1861 gatatcctgc cccttacact tgcccggctg atgaaccgga tcgactgcat cgaggtgacg
     1921 gagatcatcg acaagctccg caacccgatg atctataccg agatcatggg cttcggcgcc
     1981 gatccggaag agctgctggc caatccgcgc cgctcgcccg agacctataa atatttttat
     2041 tcctctatgg atatgatagc caaagggttt ggcaaggaga tcgagaaggt cacggtcaaa
     2101 ttcgaagttt ccaaagccaa gaatgacatc gtgcatccgc atggcgtggt aaagaaaggc
     2161 atggtcggcg gccagcatta tgaatggacc gcctgggtcg aaggcgcgcc gctgatcgtc
     2221 tatcatttct actggcagct gggggaggat ctcgatccgc tctgggaggt tggcgaggcg
     2281 aaataccgcg tggtgatcaa gggcgatccg ccgctggaat gccatctgat gggcggcaag
     2341 gatgcggatg gccgccatcc tttcctcggc ctgccctgga ccgggctggt gggctgcacg
     2401 gtggtgccgc aagtgtgcga cgcggcgcct ggcgtggtca cgcatttgga ttttggcgtg
     2461 gtgcagccga agggcctggt gcggcgctaa cggacgcaac ggtttttttg cagatggggt
     2521 aatggctttg cggccatcac cccatttttg tcaggcgccc cggaaccgga agatgccgcg
     2581 gtcgaagacg aggcgttcat catttgccca gatctgaaac accgcacctc cgtcagtgtg
     2641 ccagatcagc gcatccagca gatcgcccgg aaaaaccggc ttggagaagc gcccgcccat
     2701 cgtgccgaag cgggagacgt cattgtcaca cagccccttg agcatggccc ggcccgcgac
     2761 gccaaacgtg cccatgccga aaaagaccgg acgcgggaaa ccgtccgcat gggcgcgggc
     2821 ggggtcggtg ccatgcagcg tgcggtcgcc gaggagccgg tagatgagcg actggttgag
     2881 tccgaccggc agggaaactt tcacatccgg cgcacgcccg ggccggctcc agggctgctc
     2941 atcggccggc ttgcgtggcc cgccgaagcc gccctgcccc tgcccaaaca gcgccgcgcg
     3001 tgccgcgccg agatattcgc cgctctccac caaagtgaca cgcgattccg tcaccgccag
     3061 cgcgcccatt cccttgtcat acacgtctat gaggacgcgg gagacatgca ccctgccctg
     3121 cggcggaatg gagcgcacca gggacacgct ctgctcgcca tgcaccatgc cgaccgggct
     3181 gttgcccccc tcgccccagc caaggcgcgg tatccatgaa ccgccggccg acatgagcac
     3241 caggaaggtc ggcagcacct gctgcgcgat gccgggcgag ttctcggtgg tgaattgcaa
     3301 ctcctccaac g
//
LOCUS       DASQCV010000405         2757 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1417721, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000405 DASQCV010000000
VERSION     DASQCV010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2757
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1417721"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..107)
                     /locus_tag="VEQ16_06165"
     CDS             complement(<1..107)
                     /locus_tag="VEQ16_06165"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HYP63451.1"
                     /translation="MDQNSDIAAMSFEEALAQLEAIVRGLESGQQKLEDA"
     gene            complement(136..1062)
                     /locus_tag="VEQ16_06170"
     CDS             complement(136..1062)
                     /locus_tag="VEQ16_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HYP63452.1"
                     /translation="MSVALFTHPSALAHDTGEGHPESADRIRAVLRALELPDFSTLLR
                     EVAPPATAEQLTAAHDVDYVEAILALPQDRVTYVDGDTVFSPGSREAALRAAGGACAA
                     VDAVFEGWAEAAFVAMRPPGHHAERGRAMGFCFFNNAAIAARHARAKWGVTRVAVVDF
                     DVHHGNGTQHIFEQDKDLFYASSHQFPCYPGTGKASEHGVAHNVVNMPLAPGSNSEVF
                     RAAWGKEILPALAAFRPELLIISAGFDAHAADPLAQLRLREGDFYWVTQKLLELADEH
                     CPERVVSLLEGGYDLDALAASASAHMRALMRL"
     gene            complement(1059..1292)
                     /locus_tag="VEQ16_06175"
     CDS             complement(1059..1292)
                     /locus_tag="VEQ16_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HYP63453.1"
                     /translation="MGETLIDAQFQKGPIPVLRAARALRGMRPGEKLRVLFTDPGSVQ
                     EFREFCKMNGHALIAVSESKGVYSFSLKCGGAA"
     gene            1371..2276
                     /locus_tag="VEQ16_06180"
     CDS             1371..2276
                     /locus_tag="VEQ16_06180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011630925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HYP63454.1"
                     /translation="MAHPTHRVGIDLGGTKIEILLLDPSGAEILRRRAPTPQGYEPTL
                     NAIAALVRETEAEAGVTATVGVGIPGCISPATGLVKNANSNTLNGHRFDKDLSTLLDR
                     EVRVANDANCFALSEATDGAAAGADVVFGVILGTGTGAGIVVHGRILEGRHGLAGEFG
                     HTPLPWPKPEELPYRKCWCGQEGCLELYLAGPGLAENFHGIGARDATAIPTLAANGDK
                     AAQAALDRHADRLARGLANITNILDPDTIVLGGGLSNLPHLYEVLPDLMRPYIFSDSC
                     TPHIVPAKHGDSSGVRGAAWLWPQS"
     gene            complement(2393..>2757)
                     /locus_tag="VEQ16_06185"
     CDS             complement(2393..>2757)
                     /locus_tag="VEQ16_06185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYP63455.1"
                     /translation="NEGYYARPTVFGNVKPGMTIEKEEIFGPVLSIIPYDTVEQAIEI
                     ANDTVYGLAAYIQGKDMAKVRDVAFQLRAGSIYVNAPDIDFSAPFGGYKQSGNGREYA
                     DFALNDFMEIKGIVGYGT"
BASE COUNT          533 a         1022 c          772 g          430 t
ORIGIN      
        1 gcgtcctcca gcttctgctg gccggattcc agcccgcgca cgatggcctc cagctgcgcc
       61 agggcctcct cgaacgacat cgccgcaata tcggaattct ggtccatgcc ctgacctacc
      121 cgccttgcgt aaaattcaca accgcatcag cgcgcgcata tgcgccgaag ccgaggctgc
      181 cagcgcgtcg aggtcgtacc cgccctcgag cagcgagacg acgcgctccg ggcaatgctc
      241 atccgccagt tccagcagct tctgcgtcac ccaatagaaa tccccctcgc gtagacgcag
      301 ctgcgccagc gggtcggcgg catgggcgtc gaacccggcg gaaatgatga gcagctccgg
      361 ccggaaggct gccagggccg gcagaatctc cttcccccag gcggcgcgga acacctcgct
      421 gttgctgccc ggcgccagcg gcatgttcac cacattatgc gccaccccgt gctcactcgc
      481 cttgcccgtg cccggatagc agggaaactg atgcgatgag gcgtagaaca aatccttgtc
      541 ctgctcgaaa atatgctgcg tgccattgcc gtgatgcacg tcgaaatcca ccaccgcaac
      601 gcgggtaacg ccccatttgg cacgggcatg gcgggcggcg atggcggcat tgttgaagaa
      661 gcagaacccc atggcacggc cgcgctcggc atggtgcccc ggcgggcgca tggccacgaa
      721 ggccgcctcg gcccagccct cgaacaccgc atccaccgcg gcacaggccc cgccggccgc
      781 ccgcagcgcc gcctcgcgcg agccggggga aaacacggtg tcgccatcca cataggtcac
      841 gcggtcctgc ggcaaggcga gaatcgcctc gacataatcc acgtcatgcg ccgccgtcag
      901 ctgctccgcc gtggcgggcg gggcaacttc gcgcagcaat gtggaaaaat ccggcagctc
      961 cagcgcgcgc agcacggcac ggatgcgatc cgcgctctcg ggatgcccct cgcccgtatc
     1021 gtgcgccagc gcggacgggt gggtgaacaa agccacgctc atgccgcgcc cccgcatttc
     1081 aacgagaagc tgtacacccc cttgctctcc gacaccgcaa tcagcgcatg gccgttcatt
     1141 ttgcagaact cgcggaattc ctggacgctg ccaggatcag tgaacagcac gcgcaatttc
     1201 tcccccggcc gcatcccccg cagcgcccgc gccgcccgta gcacgggaat cgggcccttc
     1261 tgaaattgcg catcgatcaa tgtctcaccc atggagccgc aacatgcgcc gcaccccaaa
     1321 cttgatcaag catgcttgag caggaccaaa aaaacgtcaa aaaggcgccc atggcacatc
     1381 ccacacatcg cgtcggcatc gatctcggcg gcacaaaaat tgaaatcctg ctcctcgacc
     1441 cctcaggggc cgaaatcctg cgccgccgcg cccccacccc ccaaggctac gagcccacgc
     1501 taaacgccat cgccgcgctg gtacgggaga ccgaggccga agccggcgtg accgccacgg
     1561 tcggcgtcgg catccccggc tgcatctcgc ccgccaccgg cctcgtcaaa aacgccaact
     1621 ccaacaccct caacggccac cggttcgaca aggatctcag caccctcctc gaccgcgaag
     1681 tccgtgtcgc caacgacgcc aactgcttcg ctttgtccga agccacggac ggcgccgccg
     1741 ccggggcgga cgtggtgttc ggcgtcatcc tcggcaccgg caccggcgcc ggcatcgtcg
     1801 tgcatgggcg catcctggaa gggcgccacg gcctcgccgg cgaattcggc catacgcccc
     1861 tgccctggcc caaacccgag gaactgccct accgcaaatg ctggtgcggc caggaaggct
     1921 gcctggaact ctacctcgcc ggccccggcc tcgccgagaa ttttcacgga atcggcgccc
     1981 gcgacgccac ggcgatccca acattagccg ccaacggtga caaagccgct caagccgccc
     2041 tcgaccgcca cgccgaccgc ctcgcccgcg gcctcgcgaa catcaccaac atcctcgacc
     2101 cagacaccat cgtcctcggc ggcggcctct ccaacctgcc ccacctctac gaagtcctcc
     2161 cggacctcat gcgcccctac atcttctccg actcctgcac cccccacatc gtccccgcca
     2221 aacacggcga ctcctccgga gtccgcggcg cagcgtggct ctggcctcag tcgtaaaagg
     2281 gttcgtccct taatcccacc tggactgaaa gccagaaacg aaaaatggga gggcacgttg
     2341 ccctcccatc caaatcctaa gccaacggtc agtgggccga agccccccgc ctttaggtcc
     2401 cgtaaccgac gatgcccttg atttccatga aatcattcag ggcgaaatcg gcatattcac
     2461 ggccgttgcc ggactgcttg tagccgccga agggggccga gaagtcgata tccggggcgt
     2521 tgacatagat gctgccggcg cgaagctgga aggccacgtc gcgcaccttg gccatatctt
     2581 tgccctggat gtaggcggcc aggccgtaca cggtgtcatt ggcgatttcg atcgcctgtt
     2641 ccaccgtatc gtaggggatg atcgagagga cgggaccgaa aatttcctct ttctcgatgg
     2701 tcatgcccgg cttcacgttc ccgaacacgg tcgggcgggc gtaatagcct tcgttca
//
LOCUS       DASQCV010000406         1783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2742208, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000406 DASQCV010000000
VERSION     DASQCV010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2742208"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..364)
                     /locus_tag="VEQ16_06190"
     CDS             complement(<1..364)
                     /locus_tag="VEQ16_06190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1 family protein"
                     /protein_id="HYP63456.1"
                     /translation="MALNPNNSYRTAQTGFSAYDSAALDAGLRAYMLRVYNWMASGLV
                     LTGLVAFAIFSVPALHALFYTQQMNAAGEMVQVPTILSYIAIFAPLAFVMVLSFGVNR
                     LSTQAAQTLFWVFCAAMGA"
     gene            663..1376
                     /locus_tag="VEQ16_06195"
     CDS             663..1376
                     /locus_tag="VEQ16_06195"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYP63457.1"
                     /translation="MSKIILIHGAWHGADCWAKLIPLLRARGHEVLAPDLPGMGADKT
                     PLARLSMADWVASVAAHIRATPGPAVLVGHSRGGMVISAVAEAAPELVSRLIYVAAFV
                     PSDGQSLLGITQAHGGEPVPIVVDQQARSCLLGELDPVELFYQDCSEEDTANALAGLC
                     PEPLFGLMGPVKLSAARFGSVPKDYVECLADRAISLERQRQMQLVWPVQRVRGIATGH
                     SPFLSRPKELAEILSELAG"
     gene            complement(1373..>1783)
                     /locus_tag="VEQ16_06200"
     CDS             complement(1373..>1783)
                     /locus_tag="VEQ16_06200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63458.1"
                     /translation="EQTELKWTRWPTHPFFTPGHIRQALGPKPNVLILPDPVISPGMA
                     WQVESDMGFTQAAGYVGVRLKRDQKWMRLDDLIRGAVMPDFRTFFPALCAARRVDYVL
                     IGPGTPPNVTSAIEALGWPHRMDEGIEIITVPKT"
BASE COUNT          332 a          522 c          602 g          327 t
ORIGIN      
        1 tcgcccccat ggcggcgcag aagacccaga acagggtttg cgcggcctgg gtggatagcc
       61 ggttgacgcc gaagctgagc accatgacga aggccaaagg cgcgaagatc gcgatatagg
      121 agaggatggt gggaacctgt accatctcgc ccgccgcgtt catctgctgc gtgtagaata
      181 gcgcatgcag ggccggcacg gagaagatgg cgaaggcgac caggccggtg aggaccaggc
      241 cggaggccat ccagttatag acacgcagca tataggcgcg cagcccggcg tcgagcgccg
      301 cgctgtcata cgcgctaaag ccggtctgtg ccgtgcggta ggaattatta gggttcaatg
      361 ccatggattt cgattgctcc tggaaaggcc cattacggac ccagctttat catggcgtaa
      421 attgggagga attcaagtga agctatgcgc aagtgccttt tgggggaagg ttttgtgccc
      481 tttttgaata ctgctcagcg cgctcgaacc agtggcgcgc gcctcgcaac cccaaaaact
      541 tttgtaaccg gggcttgagg ttgtgactcc atgggaagcc tcaagccaat cgatcggacg
      601 tgttgcaaaa gtcgttcggt atcgcttttt tacaaaaagg cggcgcattt tcagggagca
      661 caatgtccaa aatcatactg attcacggtg cctggcacgg cgcggattgc tgggccaagc
      721 tcatccctct gctgcgcgcg cgcgggcacg aggttctggc ccccgacctg ccaggcatgg
      781 gggcggacaa gacgcctctg gcccggctct ccatggcgga ttgggtggct tcggtggcgg
      841 cacatatccg cgccaccccc ggcccggcgg tgctggtggg gcacagccgc ggcggcatgg
      901 tcatctcggc cgtggcggaa gcagcgccgg agctggtgtc ccggctcatc tatgtcgccg
      961 ccttcgtgcc ttcggacggg cagtccttgc tcggcatcac ccaggcacat ggcggggagc
     1021 ccgtgcccat cgtggtggac cagcaggcgc ggagctgcct gctgggcgag ctggacccgg
     1081 tggagctgtt ctaccaggat tgcagcgagg aggacacggc aaacgccctg gccgggctgt
     1141 gcccggagcc gctgttcggg ctgatgggac ccgtgaagct gagcgcggcg cgcttcggga
     1201 gcgtgccgaa ggattatgtg gaatgcctgg cggaccgtgc catcagcctg gagcggcagc
     1261 ggcagatgca gcttgtatgg ccggtgcagc gcgtgcgcgg catcgccaca ggccacagcc
     1321 ccttcctctc gcggccgaag gagctggcgg agattctctc agagctggcg ggttaggttt
     1381 tcggcacggt gatgatctct atcccttcat ccatgcggtg cggccagccc agcgcctcaa
     1441 tggcgctggt gacgttggga ggcgtgccgg ggccgataag gacataatcc acccggcgcg
     1501 cggcacaaag ggccgggaag aaggtacgga aatcaggcat cacggcgccc cggatcaaat
     1561 catccagcct catccatttc tggtcgcgct tgagcctgac gcccacatag cccgcggcct
     1621 gggtgaagcc catgtccgat tcaacctgcc aggccatgcc cgggctgatg acaggatcgg
     1681 gcaggatcag cacattcggc ttgggaccca gcgcttgcct gatatggccg ggcgtaaaga
     1741 aaggatgcgt tggccaacgc gtccatttga gttcggtctg ctc
//
LOCUS       DASQCV010000407         1976 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2577711, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000407 DASQCV010000000
VERSION     DASQCV010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2577711"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="VEQ16_06205"
     CDS             complement(<1..544)
                     /locus_tag="VEQ16_06205"
                     /inference="COORDINATES: protein motif:HMM:NF018485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfB/YjiJ family MFS transporter"
                     /protein_id="HYP63459.1"
                     /translation="MSEDPRRALSLAAGGFIALAVAQGIGRFVYTPILPFMVAGIGLT
                     KPEAGLIASANFLGYLLGALAAASPRLPGGKRAGFIAGLLGSALTTAAMGLVSSVPAF
                     LALRFLGGIASAFVLVFASALVLERLAAMGRPRLSSLHFAGVGSGIALSALLIAGLEA
                     AGFGWRVQWLASGGVTLIALL"
     gene            complement(613..1260)
                     /locus_tag="VEQ16_06210"
     CDS             complement(613..1260)
                     /locus_tag="VEQ16_06210"
                     /inference="COORDINATES: protein motif:HMM:NF018264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrsF family protein"
                     /protein_id="HYP63460.1"
                     /translation="MRSTEELISSLATELQPVRRLKPPALRALGWILLATALIAALVL
                     LRGLRADTADCLRDPAYLVQLAGAWLTGVAATFAAFEVSLPDRSRSWLLLPLPFAAFW
                     LSGFAYGCLADWVAIPAGAPVVPDSIRCLETLVMASLPLGFVLWIMLRRSRPLRPAAT
                     AWIGALAVAAFADTAHLLIHVVEASALVLVINLVPVSLILLLGGLLGRRSLALAR"
     gene            complement(1263..1814)
                     /locus_tag="VEQ16_06215"
     CDS             complement(1263..1814)
                     /locus_tag="VEQ16_06215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019013193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYP63461.1"
                     /translation="MSREPSKDWAALMAAAQDGDQKAYAALLRAVTPYLRAVAWRAGL
                     EGDEIEDGVQDILLTIHSIRQSYDPRRPFAPWLLAVARHRLIDRLRRRGRLRLRETEL
                     TAVHETFATDETNLPEENGEIRRLKKAIADLPPGQRQAVELLRLQELSLKEAAARSGQ
                     SPSALKVALHRALRRLRVLMPRS"
BASE COUNT          362 a          662 c          723 g          229 t
ORIGIN      
        1 gcagcagggc gatgagagtg acgccgccgc tcgccagcca ctgcacgcgc cagccgaagc
       61 ctgcggcctc gagcccggcg atgagcaggg ccgaaagcgc gatgccgctg ccgacgccgg
      121 cgaaatgcag cgagctgagc ctgggacggc ccatggctgc cagccgctcc agcaccaggg
      181 ccgaggcgaa gaccaggacg aaggcgctgg cgatgccgcc cagaaagcgc agcgccagga
      241 aggcgggcac ggagctgacc agccccatgg cggcggtggt gagcgcgctt cccaacagcc
      301 cggcgatgaa cccggcgcgc ttgccgccgg gaagccgcgg gctcgctgcc gccagcgcgc
      361 ccaggagata tcccaggaag ttcgccgagg cgatcagccc cgcctcgggt ttggtgaggc
      421 cgatgcccgc caccatgaag ggaaggatgg gcgtatagac gaagcggccg atgccctggg
      481 ccacggcgag ggcgatgaac ccgccggcag caagggacaa ggcgcggcgc gggtcctcgc
      541 tcatggggct aagataggcg ctgccccgcg ccggcgccca tgcattggcc gaaggcgaga
      601 cctgcgcgcg ggctatcttg ccagggcgag ggagcgccgg ccgagaagcc cgcccagtag
      661 aaggatcagg ctcaccggca ccaggttgat gaccaggacg agggccgagg cctcgaccac
      721 atgaatcaga agatgcgccg tatcggcgaa ggcggcgacc gccagcgcgc cgatccaggc
      781 agtggcggcc ggccgcaatg gccgggaccg gcgcaacatg atccagagca cgaatccgag
      841 cggcaggctc gccatgacca gcgtctcgag acagcggatg ctgtcgggga cgactggcgc
      901 acccgcggga atcgcaaccc aatccgccag gcagccatag gcgaagccgc tgagccagaa
      961 ggcggcgaag ggaagcggca ggagaagcca gctgcggctt cggtcgggca ggctgacctc
     1021 gaaggcggcg aatgtcgccg ccacgcccgt cagccaggcg ccggcgagct gaacgagata
     1081 ggcgggatcc cggaggcaat ccgcggtatc cgcgcgcaag ccccgcagca ggaccagcgc
     1141 ggcgatcagc gccgtggcca gcaggatcca tccgagcgca cgcagcgccg gcggcttcag
     1201 ccggcgtacc ggctgaagct ccgtcgcgag ggatgaaatc agctcctccg tcgagcgcat
     1261 gctcagctcc tgggcatcag gacgcgcagc cgccgcaagg cgcggtgcag cgcgaccttc
     1321 aatgccgatg gcgattgccc gctccgggcc gcggcttcct tcaaggacag ctcctgcaac
     1381 cgcagcagct cgacggcctg gcgctggccg gggggaaggt cggcaatggc cttcttgagc
     1441 cggcggatct cgccattctc ctcgggaagg ttcgtttcat ctgtcgcaaa ggtttcatga
     1501 accgccgtca gctccgtctc gcggagccgg aggcggccgc gccggcgcag gcggtcgatg
     1561 agccggtggc gcgcgaccgc cagcagccag ggggcgaagg ggcgccgggg atcgtagctt
     1621 tggcggatcg aatgaatggt cagcaggatg tcctggaccc cgtcctcgat ctcatcgccc
     1681 tccagcccgg cccgccatgc cacggcgcgg agataggggg tgaccgcccg gagcagcgcc
     1741 gcataggctt tctgatcgcc gtcctgcgcg gctgccatca gcgctgccca atccttggat
     1801 ggctcccgcg acatcccggg cagtctagct cctcgcgtcg cgcgaggcag cagcgagcga
     1861 gcgattgcaa tcccgcggtg gcgcggtgag actggacggc aaagggggcg gcatggcgaa
     1921 acccgcgatc acggataagg aaatgatggc ggcggtcgaa gccgaggcca gcgccg
//
LOCUS       DASQCV010000408         6640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2577824, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000408 DASQCV010000000
VERSION     DASQCV010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6640
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2577824"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>6640
                     /locus_tag="VEQ16_06220"
     CDS             <1..>6640
                     /locus_tag="VEQ16_06220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63462.1"
                     /translation="SIGTLGLLSATSDIFLNDASALSIAGTLSTPTLLTLDDAAGITA
                     SAPINAGTLTGNIGSSIGGDAILTNSLNNIGTLNNLTTNGTLNLANSTDLDTTGTVAA
                     KDITLVVNGTLGLDGALSASSSGEVGIAADGLTLGTGGTIKAPLGTIAIAPYSDNVLD
                     IGGTRNHTLDLSGTLVQALDSAATALEFGTFAGYAANTVAIESGISIANATLALNAST
                     LISNGGTLNGMLVTLSAGTLANPGSINATTLAFSTGGDFVSTGGITAGTVAGGAGGNI
                     SFTGSDNIAALNTLSAAGNIILDNGTTLTLTGPVSATRLTLNNSGNVTEASGSVIDAS
                     TFAGSIGGALALGNGNGIGTLGLLTATGNILLGDIAALSIASTLSTPGLLTLNDAAGI
                     TASAPILAGALAGTIGGNASLTSSLNNIGTLENLSATSIALNDDTALVIGGTVAANSF
                     TLNNTGTTGTVTEASGGAIDASSFLGSVTSGALLLGGSNSISNVSLADGSGNILLNDT
                     SSGNISLSASTSGELSLEGGSYTESGAISAATLDTGTGGVASAILTLSNNIGTLDNFA
                     AAGALSLSNNASLAVAGTVLAQDIGLLVNGTLGLNGALNAASGGEVGIAAKGLTLGTG
                     GTISAPSGTIAIAPYNNGVLDLGGTAAGGLDLSSTQVGALTSAASVLEFGTFGSYKAS
                     SVLVESGVSIAGATLALNATTLISNSGTLAGTLVTLSSGGSILSAGSIGAGIFAGSAG
                     SAISLGGTNNIGTLGNVTAGGNITLANTGSLILAGIVSTPGSFALGNSGAVTETGGAI
                     DAAEFDTNGTAIGGALSLTGQNSINTLGFVAAAGGVALTDKIALSIANTLATPSLLTL
                     DDSAGVTASGPILAGALTGSIGGNADLTSSLNSIGTLEGFTASNIILNNGSNGSTLVI
                     AGTVATGSFTLNNAGTVTEASGGAIDATSFQGSINGALVLGNGNSIGTLGLLTATGDI
                     LLNDATALSIANTLATPTLLTLVDAAGVTASGPIHAAAFTGSLGGAGLFSGSNSITTL
                     GAFTSNGTLLLDDTATLNIAGLVSAPSLTLNAAGVTEVTGGTLALAGFGGSLAGGADL
                     GNSNSIGALGNLTISSGTLTLDDAAALQVNGTVSAPAAALTTPSLSVPGLLTVAGLLE
                     LQSTSGLAETGRIDAGTLAGSLGGAALLTGGNSISNLGSFTATSITLLEPGTLTLAGP
                     VTATSGQVTLALGGLLEGTGGTLVARNGTIAGTIAIAPYSDGALDLGGTSAGGLELSA
                     SLLDALDPTASLVLGQAGSFTANSIVAEGNFSLANPGLLLYSTGQVSLDGTLGANALT
                     IGATGITEPGSASLSAATLTSLGTIAGGVTLAGAASAIATLGAFAATQNLAVTDAGTL
                     AVTGPVSGANIALKAASLALDGVLTTGTGGTLALTANQMSATGASLSAPSGTVSIAPL
                     TAGDEIDLGGTGSGLALSSGLIADVSSNELIIATSGGIVTGGAVSVAPGILLLSAGSG
                     ISLGGGLTAPGLLELAGGGLSSTSAGALGAGTLTSIGTLAGAFNLAAGSNHIATLSNF
                     AAAGGVTLADAAALDVTGVVSGPTIALTAAGLTLANALQAGTLAQLQSSNGITETGAG
                     VVDAPTLSSGGAVIAGNVLLNGANSFATLTDFAASGNVQLIDGSALILSGSDNAANMT
                     LSASGFNLAGNITTGTLALASNGAITQTGGNISAAVLTSDGGAIQGAANFGQQNNIAT
                     LGAFSATGALTLDDASALTVAGPVAAPEVALSANGLALNGNITTALLQLASGNGVTEG
                     AGGALNAFTLTGAITGGAVLNNGANAIGTLGNFSATGGLAFNDGTALTLDGVIAPGGV
                     LALLDPNGITQTGGAITATQLTSDGGTIGGDALFGAAGNNISAMGAFAATGAVLVAGN
                     GGLNLDGDITAATLSLDPSGAVVQSAGQLNVGVLNADLASIDLSGQNNIGSLNDIIVT
                     GDAAFSGVTSITGSLSAQNATIVTGGSLAVSGNLNVANNLDLGAGGNVTQTGGAINAG
                     SAVVSGQNITLNGNDNVAGLLRLDTSGTVLHDAGVLDAGTLAGTAGQLASFGAQTDIQ
                     TLGSFIMQDSVFALANNGPLVLVGPLVANQVSISVNGLLTLMGSANGGLFITGSIASD
                     NAIAPSSSDSVITVNNTGSPEILQTGTFYINAGPAAARYLGTSNQPATLFLNATQSGG
                     IEFATYPAGLYAPSIDLVMAAGT"
BASE COUNT         1183 a         2362 c         2090 g         1005 t
ORIGIN      
        1 cagcatcggc acgctggggc tgctcagcgc cacaagcgac atcttcctca atgatgccag
       61 cgccctcagc atcgccggca cgctgtccac ccccaccctg ctcaccctcg atgatgcagc
      121 cgggatcact gccagcgccc ccatcaatgc cggcacgctc accggcaaca tcggcagcag
      181 catcggcggc gatgcgattc tgaccaacag cctcaataat atcggcacgt tgaacaatct
      241 caccacaaat ggcacgctga atctggccaa tagcacggac ctggacacga ccggaacggt
      301 tgcggcaaag gacatcaccc tggtggtcaa tggcacattg gggctggatg gcgcgctgag
      361 cgcgagctcc agcggcgagg tgggcattgc cgccgatggt cttaccctgg gcaccggcgg
      421 aaccatcaag gcgccgctgg gcaccatcgc catcgctcct tacagtgata atgttctcga
      481 tattggcggt accaggaatc acacgctgga tctgagcggc acgctggtgc aggcgctgga
      541 cagcgccgcc acggcgctcg aattcggcac gtttgcgggg tacgccgcca acaccgtcgc
      601 catcgagagc ggcatcagca tcgccaatgc cacgctggcg ctcaatgcct ccaccctgat
      661 cagcaatggc ggcacactga atggcatgct ggtcacgctg agcgcgggga cgctggccaa
      721 tcctggcagc atcaacgcca ccacgctggc attttccacc ggcggcgatt tcgtcagcac
      781 gggcggcatc accgccggca cggtcgcggg cggcgcgggc ggcaacatct cgttcaccgg
      841 cagcgataat atcgcggcgc tcaacacact cagcgcggcc ggcaacatca ttctggataa
      901 tggcaccacc ctgaccctca ccggccccgt ctcggcgacg cgcctcacgc tcaataattc
      961 aggtaacgtg acagaggcct ccggcagcgt catcgacgca tccacgttcg ccggcagcat
     1021 cggcggcgcg ctggctctgg gcaacggcaa cggcatcggc acgctcgggc tgctcaccgc
     1081 cacgggcaac atcctgctcg gcgacatcgc tgccctcagc atcgccagca ccctgtccac
     1141 gcccggcctg ctcaccctca acgatgcggc cgggatcaca gccagcgctc ccatccttgc
     1201 cggcgcgctc gccggcacca tcggcggcaa tgcgagcctg accagcagcc tcaacaatat
     1261 cggcacgctg gagaatcttt ccgcgaccag cattgccctc aatgatgaca cggcactggt
     1321 catcggcggc acggtggccg cgaacagctt cacgctcaac aacactggta caaccggtac
     1381 cgtgacggag gcctccggcg gcgccatcga tgcgtcatcg ttcctgggca gcgtcaccag
     1441 cggcgcgctg ctgctgggcg gaagcaacag catctccaac gtgtccctgg ccgatggcag
     1501 cggcaacatt ctgctcaatg atactagcag cggcaacatc agcctcagtg cctccacctc
     1561 cggcgaactg agcctggaag gcggcagcta tacggaaagc ggcgcgatct ccgccgccac
     1621 gctggatacc ggcacgggcg gtgtggccag cgcgatcctc accctgagca ataatatcgg
     1681 cacgctggac aatttcgccg ccgccggtgc gctgagcctg tccaacaacg ccagcctcgc
     1741 cgttgccggg accgtcctgg cgcaggatat cggcctgctg gtcaatggca cgctggggct
     1801 gaatggcgcg ctgaacgcag cttccggcgg tgaagtgggc atcgccgcca aggggctgac
     1861 gctcggcacc ggcggaacca tttcggcgcc gtccggtacc atcgccatcg ccccttacaa
     1921 taacggggtc ctcgatcttg gcggcacggc ggcgggcggg ctggatttga gcagcacgca
     1981 agtgggagcg ctcaccagcg ccgcgagcgt actcgaattc ggcacgttcg gcagctacaa
     2041 ggcgagttcc gtgctggtcg aaagcggcgt cagcatcgcc ggcgccacgc tggcgctcaa
     2101 tgccacgacc ctgatcagca atagcggcac gcttgctggc acactggtga cgctgagcag
     2161 tggcggcagc attttgagcg cgggcagcat cggcgccggc atttttgcgg gcagcgctgg
     2221 cagcgccatc tcactgggcg gcaccaacaa catcggcacg ctcggcaatg tcacggcggg
     2281 cggcaacatc acgctggcta ataccgggtc cctcatcctc gccggcatcg tctccacccc
     2341 cggcagcttc gcgctcggca atagcggcgc ggtgacggag acgggcggcg ccatcgacgc
     2401 ggcggaattc gacacgaatg gcacggccat cggcggcgcg ctttcgttga ccggccagaa
     2461 cagcatcaac acgctcggct tcgttgccgc ggcgggcggc gtcgcgctca ccgacaagat
     2521 cgcgctcagc atcgccaata cccttgccac gcctagcctc cttaccctcg acgactcagc
     2581 cggtgtcacg gcgagcggcc ccatccttgc aggcgcgctc accggcagca tcggcggcaa
     2641 tgcggatctg accagcagcc tcaacagcat cggcacgctg gaaggcttca ccgccagcaa
     2701 catcatcctc aataacggct caaacggctc aacgctggtt atcgcgggta ccgtcgccac
     2761 gggcagcttc acgctgaaca atgctggcac ggtgacggaa gcctcgggtg gcgccatcga
     2821 cgccaccagc ttccagggca gcatcaatgg cgcgctagtg ctgggcaacg gcaacagcat
     2881 cggcacgctg gggctgctca ccgccacagg cgatatcctg ctcaacgacg ccaccgcgct
     2941 cagcatcgcc aatacgctcg ccacgccaac cctgctcacc ctcgtcgatg ccgccggggt
     3001 gaccgccagc gggcccatcc atgccgccgc gttcacgggc agcctgggcg gcgccggact
     3061 attctccggc agcaacagca tcaccacgct cggcgccttc accagcaacg gaacattgct
     3121 gctcgacgat acggcgacgc tgaacattgc ggggctggta agtgccccat ccctgacctt
     3181 gaacgctgct ggcgtgacgg aggtcacagg cggcacgctc gcgctggccg gcttcggcgg
     3241 cagcctggcg ggcggcgccg atctcggcaa cagcaacagc atcggcgcgc tgggcaatct
     3301 caccatcagc agcggcacgc tgacgctgga cgatgcggca gcgctccagg tgaacgggac
     3361 tgtcagcgcc ccggcggcgg cactgaccac ccccagcctc tccgtgcccg gcctgcttac
     3421 cgttgccggc ctgctggaac tgcagagcac cagcgggctg gctgaaaccg gcaggatcga
     3481 cgccggcacg ctcgccggca gcctcggcgg cgccgcgctg ctgaccggcg gcaacagcat
     3541 cagcaatctc ggcagcttca ccgccaccag catcacgctg ctagagcccg gcacgctgac
     3601 cctggccggg ccggtgacgg ccaccagcgg gcaggtaacc ctggcgctgg gcgggctgct
     3661 ggaaggcacg ggcggcacgc tggttgcaag aaacggcacc atcgccggca ccatcgccat
     3721 cgcgccctat agtgatggcg cgctcgatct cggcggcacg tccgctggcg ggctggagct
     3781 ttccgccagc ctgctggacg cactggaccc cactgcttcg ctcgttctag gccaggcggg
     3841 cagcttcacc gccaacagca tcgtcgccga gggcaatttc agcctcgcca accccggcct
     3901 gcttctctac agcaccgggc aggtctcgct ggacggcacc ctgggcgcca atgcgctgac
     3961 catcggcgcc accggcatca ccgagccggg cagcgcttcg ctcagcgcgg ccaccctgac
     4021 cagcctgggc accatcgccg gcggcgtgac cctggccggc gcggcgagcg cgatcgccac
     4081 actcggggct ttcgcggcga cgcagaacct ggccgtcacc gatgccggca cgctcgccgt
     4141 gaccggcccg gtcagtggcg ccaatatcgc gctgaaagcc gccagcctgg cgctggatgg
     4201 cgtgctcacc accggcacgg gcgggacttt ggccctgacc gcgaaccaga tgagcgccac
     4261 gggcgccagc ctgtccgcgc ccagcggcac cgtgtccatc gcgccgctga cggcaggcga
     4321 tgagatcgat ctcggcggca caggcagcgg gctcgcgctt tcctccgggc tgattgcgga
     4381 tgtttccagc aatgaactga tcatcgcgac cagcggcggc atcgtcaccg gcggcgcggt
     4441 gagcgtggcg cctggcattc tgctcctctc cgccgggagc ggcatttcct tggggggcgg
     4501 cctgaccgcg ccgggcctgc tggaactggc cggcggcggg ctgagcagca ccagcgcggg
     4561 cgcgctgggc gccggcacgc tcacctccat cggcacgctg gccggggcgt tcaacctcgc
     4621 ggcgggctcg aaccatatcg ccacgctcag caatttcgcc gcggccggcg gcgtgacgct
     4681 ggcggatgcc gccgcgctcg atgtcacagg cgttgtctcc ggccccacca tcgcgctgac
     4741 ggcggcgggg ctgactttgg ccaatgcgct gcaggccggc acgctggcac agctgcaaag
     4801 cagcaacggc attacggaaa ccggcgcggg cgtagtcgac gcgcccacct taagcagcgg
     4861 cggtgccgtt attgccggca atgtgctgct caatggcgcc aattccttcg ccacgctcac
     4921 ggatttcgcc gccagcggca atgtccagct cattgacggc agcgccttga tcctgagcgg
     4981 cagcgacaat gcggccaaca tgactttgtc cgccagcggc ttcaacctgg ccggcaacat
     5041 caccaccggc acgctggcgc tggccagcaa tggcgccatc acccagaccg gcggcaatat
     5101 atccgccgcc gtgctcacca gcgatggcgg cgccatccag ggcgccgcca atttcgggca
     5161 gcagaacaat atcgccacac tcggggcctt ctccgccacg ggcgcgctga cgctggatga
     5221 cgcttcagcg ctcaccgtgg ccggaccggt cgcggcgccg gaggtggcgc tgagcgcgaa
     5281 tggtctggcg ctcaacggca acatcaccac cgcattgctg cagctggcca gcggcaatgg
     5341 cgtgaccgaa ggggcgggcg gcgcgctcaa cgccttcacc cttaccggcg ccatcaccgg
     5401 cggtgcggtg ctgaataacg gcgccaacgc catcggcacg ctcggcaatt tctccgccac
     5461 cggcgggctc gcgttcaatg acggcacagc cctaacactg gatggcgtga tcgcgcccgg
     5521 cggcgtgctg gcgctgctcg accccaacgg tatcacccag accggcggcg ccattaccgc
     5581 cacgcagctc accagcgatg gcggcaccat cggcggcgat gcgctgttcg gcgcggcagg
     5641 caacaacatt tccgccatgg gcgccttcgc cgccaccggc gccgtgctgg tggcaggcaa
     5701 tggcgggctc aatctcgatg gcgacataac agccgccacg ctcagcctgg atccaagcgg
     5761 cgcggtggtg cagagcgcag gccagctgaa tgtcggcgtg ctgaatgccg atctggccag
     5821 catcgatctc agcggccaga acaatatcgg cagcctcaac gacatcatcg tgaccggcga
     5881 tgccgcgttc tccggcgtca catccatcac cggcagcctc agcgcgcaga acgccaccat
     5941 cgtcaccggc ggcagcctgg cggtgagcgg caatctgaac gtggcgaaca atctcgacct
     6001 cggcgccggc ggcaacgtga cccagaccgg cggcgccatc aatgccggga gcgccgtggt
     6061 ttccggccag aacatcacgc tgaatggcaa tgataatgtg gccgggctgc tcaggctcga
     6121 taccagcggc acggtgctgc atgatgcggg tgttctggat gccggcacgc tggccggaac
     6181 cgccggacag ctcgccagct ttggggcgca gacggatatc cagacgctcg gcagcttcat
     6241 catgcaggac agcgtcttcg cgcttgccaa taacgggccg ctggtgctgg tcgggccgct
     6301 ggtggccaac caggtgagca tcagcgtgaa tgggctgctg acattgatgg gcagcgccaa
     6361 tggcgggctg ttcatcaccg gcagcatcgc gtccgacaac gcaatcgcgc ccagctccag
     6421 cgattcggtc attacggtga ataataccgg aagcccggaa atcttgcaga ccggcacgtt
     6481 ctatatcaat gccgggcccg ctgcggccag gtatctcggc accagcaatc agccggccac
     6541 cttgttcctc aacgccacgc agtcgggcgg catcgagttc gccacatatc cggcggggct
     6601 gtacgcgccc tctatcgacc ttgtgatggc cgcagggaca
//
LOCUS       DASQCV010000409         3262 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_91458, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000409 DASQCV010000000
VERSION     DASQCV010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3262
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91458"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..605
                     /locus_tag="VEQ16_06225"
     CDS             <1..605
                     /locus_tag="VEQ16_06225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HYP63463.1"
                     /translation="FGWYMVQQGLKPGVLSPPPSWGGPHFLSAMFIFAALLWTGLTFR
                     APIPALVPGTKRLKPLLTASVLLLFATMGFGALVATSNAISVFHSFPTMDGHWVPPGL
                     LGQQPLWANKAFVQFSHRLLATITALTVLATAIAGLRATLPPALRDLFLLLAGLVALQ
                     YLLGMTTIVLGSNELGFFHELNAVLLFATAIAARHQLRGA"
     gene            617..2053
                     /gene="tldD"
                     /locus_tag="VEQ16_06230"
     CDS             617..2053
                     /gene="tldD"
                     /locus_tag="VEQ16_06230"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HYP63464.1"
                     /translation="MTEALAKAAELFHGAEGLDPNEAVKAITPALDGTDDGELFLEYR
                     ESESISLDDGRIRAASFDTRRGFGLRAVLGEASYFAHAGEISAPALARAAETIRAAKA
                     LELPVTAAGPSGAKAPLYEGVNPLAEAPFAARAALLKQIDDFARAADPRVVQVMASIS
                     GEWQVIEIIRADGNRAADVRPLVRLNVSVVMEENGRRESGSYGAGGRTGYGAYVDPNF
                     WQSAVREAIRQAEVNLRSVPAPAGEMEVVLGSGWPGILLHEAIGHGLEGDFNRKQTSA
                     FAGLMGSRIASPGVTVIDDGTIPNRRGSLTIDDEGTPTSRTTLIEDGILVGFIQDRQN
                     ARLMNMRATGNGRRQSYAHSPMPRMTNTIMLGGEASPEDMIKSVKRGLYAVNFGGGQV
                     DITSGKFVFSAAEAYLIEDGKVTAPVKGATLIGNGPDALTKVEMIGNDMALDPGIGTC
                     GKNGQGVPVGVGQPTIKLSGLTVGGTAA"
     gene            2070..2429
                     /locus_tag="VEQ16_06235"
     CDS             2070..2429
                     /locus_tag="VEQ16_06235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63465.1"
                     /translation="MAERMKSYRTNWTNILLLCGKCARKMDGGYGEDGGDTLRSVMKT
                     ALKEAGLKRQTRLIETKCMGLCPKNAVIAVNASHPGRMLVIPKGTEANVVLARLGQPV
                     FLGEDARAGLTLEDKAA"
     gene            2426..3079
                     /locus_tag="VEQ16_06240"
     CDS             2426..3079
                     /locus_tag="VEQ16_06240"
                     /inference="COORDINATES: protein motif:HMM:NF013488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxychromene-2-carboxylate isomerase"
                     /protein_id="HYP63466.1"
                     /translation="MSLPTADWYFDVISPFAYLQWQQRGRLAGLVTLRPVPVVLGALL
                     GHWEQKGPAEIPPKRLQTYRRCQWHAEHLGIQFRFPPAHPFNPIAALRLAVACGASEA
                     AVDAVFGAAFGEGRDVSDMAVLEEIGRKLGIEDVAATIARPEVKAQLRANTDAAIARG
                     VFGVPTVDAGGELFWGEDATGMLLDYLKNPALFASPEMQRLQHLPMGAQRDTAKKPA"
     gene            complement(3083..>3262)
                     /locus_tag="VEQ16_06245"
     CDS             complement(3083..>3262)
                     /locus_tag="VEQ16_06245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63467.1"
                     /translation="IFTCTIEYLASPDLQDSFASAEIVSLSRRFANLRATSWQPHSGK
                     MIGAATLQFLTTPQG"
BASE COUNT          554 a         1114 c         1008 g          586 t
ORIGIN      
        1 cctttggctg gtacatggtg cagcaggggc tgaagcccgg cgtgctctcc ccgccgccaa
       61 gctggggcgg gccgcatttt ctctccgcca tgttcatttt cgccgccctg ctctggacgg
      121 gcctcacctt ccgcgcgccc atccccgccc ttgtgccagg tacgaagcgg ctgaaaccgc
      181 tgctcacggc aagtgtcctg ctcctcttcg ccaccatggg cttcggcgcg ctggtcgcca
      241 cctccaatgc catcagcgtg tttcattcct tccccaccat ggacgggcat tgggtgccgc
      301 ccggcctgct cggccagcag ccgctctggg ccaacaaggc tttcgtgcaa ttcagtcacc
      361 gcctgctcgc caccatcacc gcgctcaccg tgctcgccac cgccatcgct ggcttgcgcg
      421 caaccctgcc ccccgctctg cgcgatcttt ttctcctctt ggctgggctg gtggcgttgc
      481 aatatcttct cggcatgacc accatcgtcc tgggcagcaa cgagctcggc tttttccatg
      541 agctgaacgc cgtgctgctc ttcgccacag ccatcgcggc gcgccaccag ttgcgcggcg
      601 cgtaaggagt ttgatcatga ccgaagccct cgccaaagcc gccgaattat tccatggcgc
      661 cgaagggctc gacccgaacg aggccgtgaa agccatcacc cccgcgcttg atggcacaga
      721 tgacggcgag ctgttcctcg aatatcgcga atccgaatcg atctcgctcg atgacggccg
      781 catccgcgcc gccagtttcg acacgcgccg cggctttggc ctgcgcgccg tgctgggcga
      841 ggcctcgtat ttcgcgcatg cgggcgaaat ttccgcgccc gctctcgccc gcgcggcgga
      901 aaccatccgc gccgccaagg cgctggaatt gcccgtaaca gccgccggcc cttctggcgc
      961 caaggccccg ctttatgaag gcgtcaaccc gctcgccgaa gcccccttcg ccgcccgcgc
     1021 cgcattgctc aagcagatcg atgatttcgc ccgcgccgcc gacccgcgcg tggtgcaggt
     1081 gatggccagc atctccggcg agtggcaggt catcgagatc atccgtgccg acggcaaccg
     1141 cgccgccgat gtccgtccgc tggtgcgcct caatgtctcc gtggtgatgg aagagaacgg
     1201 ccgccgtgaa tccggttctt acggcgccgg cggccgcacc ggctacggcg cctatgtgga
     1261 cccgaatttc tggcaatccg ccgtgcgcga agccatccgc caggccgagg tgaatctgcg
     1321 ctctgtccct gcccccgccg gcgagatgga agtggtgctc ggctccggct ggcccggcat
     1381 tttgctgcat gaggccatcg gccatgggct ggaaggtgat ttcaaccgta agcagacctc
     1441 tgccttcgcc ggcctcatgg gcagccgcat cgccagccca ggtgtgacgg tgattgacga
     1501 tggcaccatc cccaaccgcc gcggctcgct gaccatcgac gacgaaggca cgccgacctc
     1561 gcgtaccacc ctcatagagg acggtatcct ggtcggcttc atccaggacc ggcagaatgc
     1621 gcgccttatg aacatgcgcg ccaccggcaa tggccgccgc caatcctacg cccattcccc
     1681 catgccgcgc atgaccaaca ccatcatgct gggcggcgag gcctctccgg aggacatgat
     1741 caaatccgtc aagcgcggcc tctatgcagt gaatttcggc ggcggtcagg tggacatcac
     1801 ttcgggcaaa ttcgtcttct ccgccgccga ggcgtacttg atcgaggatg gcaaggtgac
     1861 cgccccggtg aagggcgcga cgctgatcgg caacgggccg gatgcgctga cgaaagtgga
     1921 gatgatcggc aatgacatgg cgctcgaccc cggcattggc acctgcggca agaatggcca
     1981 gggtgtcccc gtgggcgtcg gccagccgac gatcaagctt tccggcctga cagtgggcgg
     2041 cacggcggcc tgaggcgggc cttggtctca tggctgagcg catgaaatcc taccgcacca
     2101 actggaccaa tatcctgctc ctgtgcggca aatgcgcccg caagatggat ggcggctacg
     2161 gcgaggatgg cggcgacacg ctgcgctctg tgatgaaaac cgcgctcaaa gaagccgggc
     2221 tgaagcgcca gaccaggctg atcgagacca aatgcatggg gctctgcccg aaaaacgccg
     2281 tcatcgcggt gaatgcgagc catcccggcc ggatgctcgt catcccgaaa ggcaccgagg
     2341 ctaatgtggt gctggcgcgg ctcggccagc ccgtattcct tggcgaggat gcccgtgccg
     2401 gtctcacatt ggaggacaag gcggcatgag cttgcccacc gccgattggt atttcgatgt
     2461 catctccccc ttcgcctatc tgcaatggca gcagcgcggc aggcttgctg ggttggtgac
     2521 attgcgcccc gtgccggtgg tgctgggtgc cttgctcggc cattgggagc agaaaggccc
     2581 ggcggaaatc ccgccgaaac ggctgcaaac ctatcgccgc tgccaatggc atgcggagca
     2641 tctcggcatc cagttccgct tcccgcccgc gcacccgttc aaccccatcg ccgcactgcg
     2701 cctcgccgtc gcctgtggtg ccagcgaggc ggcggtggat gcggtgttcg gcgccgcctt
     2761 cggcgagggg cgtgatgttt cggacatggc ggtattggag gaaatcggcc gcaagctcgg
     2821 tattgaggac gttgccgcca ccatcgcccg gcccgaggta aaggcgcaat tgcgcgccaa
     2881 taccgacgcc gccattgccc gcggcgtatt cggcgtaccc accgtggatg ccggcggaga
     2941 attattctgg ggcgaggacg ctaccggcat gctgctggat tacctcaaaa accccgcttt
     3001 gttcgcctca cccgagatgc agcgcctgca gcatctgccc atgggcgcgc agcgcgacac
     3061 ggccaagaag ccggcctgac tctcagccct gcggcgtggt cagaaattgc agtgtcgccg
     3121 cgccgatcat cttgcccgaa tgaggctgcc aggaagtggc gcgcagattg gcgaaacgcc
     3181 ggctcagcga gacgatctcg gcgctggcaa aactatcctg cagatcgggc gaggcgagat
     3241 attcgatcgt gcaggtgaaa at
//
LOCUS       DASQCV010000410         1869 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2578024, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000410 DASQCV010000000
VERSION     DASQCV010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2578024"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1869)
                     /locus_tag="VEQ16_06250"
     CDS             complement(<1..>1869)
                     /locus_tag="VEQ16_06250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63468.1"
                     /translation="ALLVPAAHGIWPQEARLLYDLQKVCIDHERPVYSLEIGEWAYSG
                     FRQPLVRPLPNQSPLLAVKHLRSAVGRLPAVRVTAAERHALSGLLHSALHHAEGRLRE
                     RFRPILVEALDAVGLKPGNFPERVAHDKLVEELLDLVAERGFLTMGDLRDALSRNQLK
                     LPDLGGPGDFLRGDMLIRANRALAERAAGVYRRGPIYLRLLQRLSATAFGTRPGRWLT
                     LFLFLPFGGAFATIIMVQEIQHLLGLSHHHKPAALAIASGAAGTVQPHHHIDWEFLGI
                     TTGVLGVFYIFLLHVPPFRRAVGQGLGLFWLTVRAVLFELPGKFLSLPAVRGFFDSLP
                     FLFFWRFVVKPLPCALVMWLVLLYCGVDAGHAALAGLVTLLAVSAFINSRQGRRLEEM
                     AIDWAAQRWEHLRGLIPGLFRLVVDFFKRIMEGIDRGLYTVDEWLRFRQGQGRRMLAV
                     KIVLGFVWTIFSYFVRLFVSVFIEPTINPLKHFPAVTVAAKLLVPFWIPLTEFFATPI
                     MFLGRPLALSIAFLMLHSLPGAAGFLVWELKENWRLYRANRPTNLEPVVIGHHGETML
                     RLLKPGFHSGTLPKLYAKFRRAERRAFQSGAWRTALKLRENLHHVEESIRRFTERE"
BASE COUNT          399 a          588 c          620 g          262 t
ORIGIN      
        1 gctcgcgctc ggtgaaacgt cggatgctct cttcaacgtg atgcaggttc tcacgcagct
       61 tcaacgcggt tcgccaggcg ccgctttgaa aggcacggcg ttcggcccgg cgaaactttg
      121 cgtacagttt gggcaaagtg ccggagtgga agccgggctt cagaagccgg agcatggttt
      181 cgccgtgatg gccgatgacc accggctcca ggttggtggg ccgattggcg cgatagagcc
      241 gccagttttc cttgagctcc cagaccagga agccggccgc ccccgggagc gagtgcaaca
      301 tgaggaaggc aatactcagg gccagaggcc ggcccaggaa catgatgggc gtggcgaaaa
      361 actcggtcag cggaatccag aacggcacca ggagcttggc cgccaccgtc acggccggga
      421 aatgcttgag cggattgatc gtcggctcga taaagacgct cacaaacagc cggacgaaat
      481 acgaaaagat ggtccagaca aagcccagca cgatcttgac ggccagcatg cgccggccct
      541 gcccctggcg gaagcgcagc cattcatcga cggtgtacag gccgcgatcg atcccttcca
      601 tgatccgctt gaagaaatcg accacgagcc gaaacaggcc ggggatcaag ccgcgcaagt
      661 gttcccagcg ctgggcggcc cagtcgatgg ccatctcttc caggcgccgg ccctggcgcg
      721 agttgatgaa ggcgctgacg gccagcagcg tcaccagtcc ggccagggcc gcatggccgg
      781 catcgacgcc gcaatagagc aataccagcc acatcactag cgcgcatggc aacggcttga
      841 ccacaaagcg ccagaagaac aagaagggca agctgtcgaa gaaaccgcgc accgccggca
      901 ggctcaagaa tttgcccggc aattcgaaga gcacggcccg caccgtcagc cagaagagcc
      961 ccagtccctg gcccactgcc cggcgaaacg gcggcacgtg cagcagaaag atatagaaga
     1021 cgcccagcac gccggtggtg atacccagga attcccagtc gatgtgatgg tgcggctgga
     1081 cggtgcccgc ggcgcccgag gcgatggcca gcgccgccgg cttgtgatga tgcgacaggc
     1141 cgagcaggtg ctgaatctcc tgcaccatga tgatggtggc aaaggcgccg ccgaagggca
     1201 ggaagagaaa cagagtgagc cagcggccgg gccgggtgcc gaacgccgtg gcgctgagcc
     1261 gttgcagcaa gcgcaggtag atcggtccgc ggcggtagac gccggcggca cgctcggcca
     1321 gtgcccggtt ggcacggatg agcatgtcgc cgcggaggaa atcgcccggt ccgcccaggt
     1381 ccggcagctt gagctggttt cgcgaaaggg cgtcgcgcag atcgcccatg gtcaaaaagc
     1441 cgcgctcggc caccaggtcg agcaattcct ccaccaactt gtcgtgggcg acccgttccg
     1501 gaaagttccc tggcttcagg ccgacggcat ccagggcctc gaccaggatg ggacgaaaac
     1561 gctcgcgcag ccggccttcc gcatggtgca aggcactgtg caacaggccg gacagggcat
     1621 gccgctcggc agcggtgacg cgaaccgccg gcagcctgcc caccgcgctg cgaagatgct
     1681 tgaccgccag cagcggcgac tgattgggca acggccggac cagcggctga cgaaatccag
     1741 aatatgccca ctcgccaatc tccagggagt agacgggccg ctcgtgatcg atgcagacct
     1801 tttgcaggtc gtagagcagc ctggcttcct gtggccagat gccgtgcgcg gccgggacca
     1861 acagagccg
//
LOCUS       DASQCV010000411         1511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1750644, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000411 DASQCV010000000
VERSION     DASQCV010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1750644"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..734
                     /locus_tag="VEQ16_06255"
     CDS             <1..734
                     /locus_tag="VEQ16_06255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007436008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYP63469.1"
                     /translation="GAAWYNVAASDTHLVLMPSYNTGPRLARTAEEARAAWQPVWVVV
                     DGSDDGSDEGLEDGPGFRVLRRARNGGKGAAVLDGLRAADAAGFSHVLVMDADGQHPA
                     GEIARFMALSREHPEAMILGVPVFDASAPRVRVLGRRISNGLVRFETGQNIGDALFGF
                     RVYPLRALRAVMEAGRHMRGYDFDTEALVRLCWRGVEVRNCAVPVRYFAKAEGGVSHF
                     RYGRDNALLFAMHVRLIGEMVRRRF"
     gene            complement(876..>1511)
                     /gene="fabG"
                     /locus_tag="VEQ16_06260"
     CDS             complement(876..>1511)
                     /gene="fabG"
                     /locus_tag="VEQ16_06260"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007435993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HYP63470.1"
                     /translation="CIHANSNFAPAEALAADIIADGGSAEAQRFDITDAAATQDALAA
                     LLAAGPIQILVNNAGIHDDSVLPGMRPEQWSRVIDVSLNGFFNVTQPLLLPMIRTRWG
                     RIINISSVAALMGNRGQANYAAAKAGLHGATRSLALEVASRGITVNVVAPGIIESPMT
                     ETAFPKEAIAKLVPMQRAGQPGEVADLVAFLASERAAYISGQIISINGGMA"
BASE COUNT          241 a          389 c          581 g          300 t
ORIGIN      
        1 tgggagcagc ctggtataac gtggctgcgt ctgacacgca tcttgttctg atgccgagct
       61 ataataccgg tccccgtttg gcgcggacgg cggaggaggc gcgggcggcg tggcagcccg
      121 tgtgggtggt ggtggatggc agcgatgatg gcagcgatga gggcctggag gatgggcctg
      181 gcttccgcgt gcttcgccgc gcccgcaatg gcggcaaggg ggcggcggtt ctggatgggc
      241 tacgggcggc ggatgcagcg gggttcagcc atgtgctggt gatggatgcg gatgggcagc
      301 atccggcagg ggagattgcg cgtttcatgg cgctgtcacg ggaacatccg gaggcgatga
      361 ttctgggggt gcctgtgttc gatgcgtcgg cgccgcgtgt gcgggtgctg gggcggcgta
      421 tttccaatgg gctggtccgg tttgagacgg ggcagaatat tggggatgcg ttgtttggct
      481 tccgtgtcta tccgctgcgg gcgctgcggg cggtgatgga ggcggggcgg catatgcggg
      541 gttatgattt cgatacggaa gcactggtgc ggctgtgctg gcgcggggtg gaggtgcgga
      601 attgcgccgt gccggtgcgg tattttgcga aggcggaggg cggggtttcc catttccgct
      661 atgggcggga taatgcgctt ctgtttgcca tgcatgtaag gctgattggc gagatggtgc
      721 ggcggcggtt ttagagactg tttcagaagt cgctctggtg agtcgtcaag cggtgatttt
      781 tgagcaccgg agcggagcgt acatcagtac gtgagcaccg gagcacagaa aatcgccgct
      841 tgacggccgc cagagtagac ttatgaaaca gtctcttagg ccatgccgcc attgatcgag
      901 atgatctgcc cggaaatgta agccgcgcgc tcggaggcga ggaaggcgac gaggtcggcc
      961 acttccccgg gctggccggc gcgctgcatc ggcaccagct tcgcgatcgc ttccttggga
     1021 aaagccgttt cggtcatggg cgattcgatg atgcctggcg ccaccacatt caccgtgatg
     1081 ccacggctcg ccacttccag cgccagagag cgcgtggcgc cgtgcagccc ggccttggcg
     1141 gcggcgtaat tggcctggcc tcgattgccc atcagcgccg ccacggagga gatgttgatg
     1201 atgcggcccc agcgcgtgcg gatcatcggc aacagcaaag gctgggtgac gttgaagaag
     1261 ccgttgagcg agacatcgat gacgcgcgac cattgctcgg ggcgcatgcc cggcagcact
     1321 gaatcgtcgt ggatgccggc attgttcacg agaatctgga tggggccggc ggcgagaagg
     1381 gcggcgagcg catcctgcgt tgccgcggca tcggtgatgt cgaagcgctg cgcctcggcg
     1441 gagccgccat cggcgatgat gtccgccgcc agcgcctcgg ccggggcaaa attgctgttg
     1501 gcatggatgc a
//
LOCUS       DASQCV010000412         2443 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1914761, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000412 DASQCV010000000
VERSION     DASQCV010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2443
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1914761"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..745
                     /locus_tag="VEQ16_06265"
     CDS             <1..745
                     /locus_tag="VEQ16_06265"
                     /inference="COORDINATES: protein motif:HMM:NF025596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4338 domain-containing protein"
                     /protein_id="HYP63471.1"
                     /translation="WKQPNGVPRDMVCRGLLLSLDRAGAIELPAVRRHLRNPLADRSR
                     PEPVIPDNRPVRGPLREILPLSIEQVRRSEQEPLFNSLMEQYHYLRYEQPVGEHLKYL
                     IKTRGQVIACLAWSSAPRHLGSRDRFIGWDAEARRRNIHRIAYNTRFLILPWVQQTPH
                     LASHILGRMARQVSRDWQQVYAHPIHLLETFVDPERFAGTCYRAANWIVVGKTTGRGK
                     DSNSDQPNRSLKLVLVLPLHRRFRELLRQ"
     gene            753..2348
                     /locus_tag="VEQ16_06270"
     CDS             753..2348
                     /locus_tag="VEQ16_06270"
                     /inference="COORDINATES: protein motif:HMM:NF033517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HYP63472.1"
                     /translation="MKLDSEAIDISIEELERVVDGARHQTLSQDEHRKLRAAVETLGQ
                     MARMLADRDATLRQLRQMLLKPATTEKTRAVLERAGIPGNGSKPVPTVAEKQPRKGHG
                     RKPARAFVAAEKVAVPHPLLQPGDRCPECAKGKVYPLKDPALRVRIIGQAPVQATVYE
                     LARLRCNLCQEVYEAPAPVGIGADKRDETAASMVAVLKYGSGVPFYRLAGLQDNLGIP
                     LPVSTQWDMMAAAAAPLEPAYAELIRQAAQGQVLYNDDTAARILALQRETPADRRGVF
                     TTGIVATAQGRKITLFFSGDKHAGENLADVLKQRAAELPPPIQMCDALSRNVPKGLAV
                     ILGNCLAHCRRHYVEVAANFAPECQYVLETLGAVYGYDEEAHRVGMSDIERLVHHQAR
                     SGPLMYELRQWGQQQLDEHRVEPNSGLGQAIAYMLNHWEKLTLFLRQAGAPLDSNIVE
                     RALKKAILLRKNALFFKTRNGARVGDLFMSLIHSCESCGGNPFDYLTQLQRHADELAQ
                     NPSRWMPWNYRATLDEAALSSVA"
BASE COUNT          489 a          722 c          819 g          413 t
ORIGIN      
        1 ctggaagcag cccaatgggg tcccacgcga tatggtgtgc cgcggcctgc tcctcagtct
       61 cgaccgcgcc ggggcgatcg agctgcccgc cgtgcggcgg caccttcgga acccactggc
      121 ggatcgcagc cggcccgaac cggtcatccc ggataaccgg ccggtgcgcg ggccccttcg
      181 cgagatcctg ccgctgtcca ttgagcaggt gcggcggagc gagcaagaac cgctgttcaa
      241 cagcctcatg gagcagtatc actacctgcg ctacgagcag ccggtcggcg agcatttgaa
      301 atatctgatc aagacccgcg gccaggtgat cgcgtgtctg gcctggtcga gcgccccgcg
      361 ccatctgggc agccgcgacc gcttcatcgg ctgggacgcg gaggcgcgcc ggcgtaacat
      421 ccatcggatc gcctacaaca cgcggtttct cattctgccg tgggtgcagc agacgcccca
      481 cctggcttcg cacattctgg ggcgcatggc gcgccaggta tcgcgtgact ggcagcaggt
      541 ctacgcgcat ccgattcatc tgctggaaac ctttgtggac cccgaacggt tcgccggaac
      601 ctgttaccgg gcggcgaatt ggatcgtggt gggcaagacc acaggacggg gtaaggactc
      661 caacagcgat cagcccaatc gctctctgaa actggttctg gtgctaccct tgcaccggcg
      721 tttccgtgaa ttgctgcgcc aataggtccg ccatgaaact ggactcggag gccatcgaca
      781 tcagcatcga ggaattggaa agagtggtgg acggagcccg ccatcaaaca ctcagccagg
      841 acgagcatcg caagttgagg gcagcggtgg aaacgctggg acagatggca cggatgctgg
      901 ccgacagaga cgcgaccctg cgccaactgc ggcagatgct gctgaagccg gccaccaccg
      961 agaagacgcg cgcggtgctc gagcgcgcgg ggattccggg caacggcagt aagcccgtgc
     1021 cgacggtggc ggaaaagcag ccacgcaaag ggcatggacg taagccggcg cgggcgtttg
     1081 tggcagcgga gaaggtggcg gttccccatc ccttgctgca accgggcgac cgatgcccgg
     1141 agtgcgcgaa aggaaaagtc tatccgctca aggatcccgc gctgcgagtg cggatcatcg
     1201 gtcaggcgcc ggtgcaggcg accgtgtacg aactggcgcg attacgctgc aacctgtgcc
     1261 aggaagtata cgaagccccg gcgccggtcg ggataggcgc cgacaaacgg gacgagaccg
     1321 cggccagcat ggtggcagtg ttgaagtatg gcagcggtgt gcccttctat cggctggctg
     1381 ggttgcagga caatctcggc atccccttac cggtatcaac gcaatgggac atgatggcgg
     1441 cggccgcagc cccgctcgaa ccggcgtatg cggaactgat ccggcaggcg gcgcagggcc
     1501 aggtgttata taacgacgac acggcggcgc gaatcctggc gctccagcgg gaaactccgg
     1561 cggaccgcag gggcgtcttc acaacaggga tcgtagccac cgcgcagggg cgcaagatca
     1621 cgcttttctt cagcggagac aaacacgcgg gcgagaacct ggccgatgtg ttgaagcagc
     1681 gcgcggccga attaccgccg ccgatccaga tgtgtgatgc tctgtctcgc aacgtaccga
     1741 aggggttggc cgtgatcctg ggaaactgtc tggcccattg tcgcaggcat tacgtggaag
     1801 tggcggccaa ctttgcgccg gaatgccagt atgtgctgga gaccctgggc gccgtgtatg
     1861 gctatgacga ggaggcacac cgagtgggga tgagtgatat cgagcggttg gtccaccatc
     1921 aagcccgcag cgggccgctg atgtacgagt tgcggcaatg gggtcagcag cagttggacg
     1981 agcaccgggt ggagcccaac tcggggttgg gccaggcgat cgcctatatg ctcaaccatt
     2041 gggagaagct gacactgttt ctgcggcaag ctggagcgcc gctggattcc aacatcgtgg
     2101 agcgggctct aaagaaagcg attttgctga gaaagaatgc gctgttcttt aagacgcgaa
     2161 atggcgcgcg cgtcggggac ttgttcatga gtctgattca ctcctgcgag tcatgcggcg
     2221 gcaatccgtt cgactacctg acccagttgc aacgccatgc cgatgaactg gcccagaatc
     2281 ccagccgatg gatgccctgg aactaccgtg cgacgctgga tgaggcggcc ctgtcctccg
     2341 tggcctgaat gccctgccag gagattgcga tgtctcgaaa agcaagatcg agccagccga
     2401 cggcatgcga cgtgtgtcac ggcacgaatc tggttcggcg aat
//
LOCUS       DASQCV010000413         1513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2412142, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000413 DASQCV010000000
VERSION     DASQCV010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2412142"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..581)
                     /locus_tag="VEQ16_06275"
     CDS             complement(<1..581)
                     /locus_tag="VEQ16_06275"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD binding domain-containing protein"
                     /protein_id="HYP63473.1"
                     /translation="MKNFQYYRPSTVDQAIALLDTRWGPSALLAGGTDLHDLQKEYVA
                     QPARVVSLNAINGLSGIANERAGLKIGANATLAAIAAHETVRKSFPGLAAAAGEIGGP
                     QIRNMGTLGGNLCQRNRCWYFRDEHVNCLLKGGQRCFALDGENKYHAVFTQGSRCVIV
                     NPSTLAPVLIALEATAEVQGPRGRRTVELGKFF"
     gene            complement(584..>1513)
                     /locus_tag="VEQ16_06280"
     CDS             complement(584..>1513)
                     /locus_tag="VEQ16_06280"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HYP63474.1"
                     /translation="HGIGMALHTWGGSGGPNNDVKVTISQDGSVLVQCSTQDLGTAER
                     TVLAIVVAEILGLNASDITVEIGESQFGRSTPSGGSTTCPGTAPAALNAATAARDAFL
                     TAIAPRLPGTPQVGDLSIEPGRIRIRGNETPIPWRQACSRLGQNTPAVGNGNWTQGLS
                     NRGVGGIQIAEVKVDTETGVVRCTKVVAVQDCGLIINKQGCESQVAGGVIMGVNYALF
                     EEAIFDKNTGRQVNPDMEFYKLGGIQDMPNIVVHMMDMPERGVIGIGEPPTISTAAAI
                     GNAVFNALGVRVPHAPYTPERVLAALAGRKAGN"
BASE COUNT          254 a          474 c          483 g          302 t
ORIGIN      
        1 taaaagaact tgcccagctc tacggtcctc ctgccgcgcg gcccttgcac ttccgccgtc
       61 gcttccaatg caatcagcac cggcgccagc gtggacggat tgacgatcac acagcggctg
      121 ccctgggtga agacagcgtg atacttgttc tcgccgtcca gggcgaagca gcgctggccg
      181 cccttgagca gacagttgac atgctcgtcg cggaaatacc agcagcgatt gcgctggcac
      241 agattgccgc ccagggtgcc catattacgg atttgcggtc cgccgatttc gcctgcagcg
      301 gcggccaggc caggaaagct cttgcgcacc gtttcatggg ccgcgatggc agccagggtt
      361 gcgttggcgc cgatcttcag accggcccgc tcattggcga tgccggacag cccgttgatc
      421 gcgttcaagc taaccacgcg cgccggctga gcgacgtatt ccttttgcaa gtcgtgcagg
      481 tccgttcccc ccgccagaag cgcgctgggg ccccagcgcg tatccagcag agcgatggcc
      541 tgatcgaccg tgctgggtcg gtagtactgg aagttcttca tgattagtta cccgcctttc
      601 tgccggccag ggctgccaag acgcgttccg gagtgtaggg agcatgaggc acgcggacgc
      661 cgagggcatt gaagacggca ttgccgatgg ctgccgccgt cgagatggtg ggcggctcgc
      721 cgatgccgat cacaccgcgc tccggcatat ccatcatgtg caccacgatg ttgggcatgt
      781 cctggatgcc gccgagcttg tagaactcca tgtcgggatt gacttgccgg ccggtgttct
      841 tgtcgaagat ggcttcctcg aagagggcgt agttgacgcc catgataacg ccgccggcca
      901 cctgcgattc gcagccttgt ttattgatga tgagcccgca gtcctggacc gcaacaacct
      961 tggtgcaacg gaccacgccg gtctcggtat cgaccttgac ctcggcaatc tggatgccgc
     1021 cgacgccgcg gttggagagg ccctgagtcc agttgccgtt gcctactgct ggtgtgtttt
     1081 gtcccagccg cgagcaggct tgccgccacg gaatcggcgt ctcgttgccg cggattcgaa
     1141 tccgtcccgg ctcgatggat agatcgccga cctggggggt tccaggaagt cggggtgcga
     1201 tggccgtgag gaatgcgtcc cgggccgccg tggcggcatt caacgccgcc ggcgccgtgc
     1261 cgggacaggt tgtgctgccc cccgatggtg tcgagcggcc aaattgactt tcgccgatct
     1321 ccacggtgat gtctgatgcg ttcagaccca gaatctccgc aacgacgatg gcaagcaccg
     1381 tgcgctccgc agttccgaga tcctgggttg aacactggac caggacggaa ccatcctgac
     1441 tgatggtgac cttgacatcg ttgttgggtc cgccgctgcc gccccaggtg tgcagggcca
     1501 tgccgatgcc gtg
//
LOCUS       DASQCV010000414         1970 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2909947, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000414 DASQCV010000000
VERSION     DASQCV010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2909947"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..970)
                     /locus_tag="VEQ16_06285"
     CDS             complement(<1..970)
                     /locus_tag="VEQ16_06285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide reductase N-terminal alpha
                     domain-containing protein"
                     /protein_id="HYP63475.1"
                     /translation="MNVMTKPEAALFETPIQMRERHQVRVDHSRDALLTDFGRATLDD
                     RYLLPGESYQDLFARVASYYGDDQAHAQRLYDYISKMWFMPATPVLSNGGTDRGLPIS
                     CFLNEASDSLEGIVGLWNENGWLASKGGGIGSYWGNLRSIGEKVKGAGKTSGIIPFIR
                     VMDSLTLAISQGDLRRGSAAVYLPVWHPEIEEFVEIRRPTGGDPNRKALNLHHGVLIS
                     DAFMRAVEADEPWPLKSPKDGSHVRSVSARALWIRILTARIEQGEPYLIFSDHVNNAR
                     PEQHKLAGLEVKTSNLCAEITLPTGVDQYGKERTAVCCLSSLNLETW"
     gene            complement(1254..>1970)
                     /locus_tag="VEQ16_06290"
     CDS             complement(1254..>1970)
                     /locus_tag="VEQ16_06290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63476.1"
                     /translation="NLTLAPFTSNIAELNPPAWTLRYELLFYLIFGLALLPYARRVLL
                     PVWGLALAASWYHKLRGWGGPATLLPFLPVGVSTHLFALDNIMFFAGLGASWAFARLK
                     PPSYILWPLLGSAVIALALLLRLDQWGTLYPLAPRLPFTAVVFAIVIFALAALERGGH
                     LRLGRRGAALGAMSYPLYLMHVIPRFILAVWFFYHPAARHYYPAIPTFFLLLTASLLL
                     AALTAFWFDAPLQRLARKLL"
BASE COUNT          435 a          535 c          685 g          315 t
ORIGIN      
        1 gccaggtttc caggttcagc gaggagaggc agcacacggc ggtgcgctcc ttgccatact
       61 ggtccacgcc cgtaggcagg gtgatttcgg cgcagagatt ggaggtcttc acctcgagcc
      121 cggcgagctt gtgctgctcg gggcgggcat tattcacatg gtcggagaag atgaggtacg
      181 gctcgccctg ctcgatgcgc gcggtgagga tgcggatcca cagtgcgcgg gcagagacgg
      241 agcgcacatg cgagccgtcc ttgggcgatt tcagcggcca tggctcatcc gcttcgacgg
      301 cgcgcatgaa cgcgtccgag atgaggacgc catgatgcaa attgagcgcc ttacggttgg
      361 ggtcgccgcc ggtgggacgg cggatttcca cgaattcctc gatctccgga tgccagaccg
      421 gcagatagac ggcggccgag ccgcggcgca gatcgccctg ggagatggcg agggtgaggc
      481 tgtccatgac gcggatgaag gggatgatgc cggaggtctt gcccgcaccc ttcaccttct
      541 cgccgatgga gcggagattg ccccaatagg agccgatgcc gccgcccttg gaggcaagcc
      601 agccattctc gttccacagc ccgacaatgc cttccaggct gtcggaggcc tcgttgagga
      661 agcaggagat gggcaggccg cgatccgtgc cgccattcga cagcaccggc gtggcgggca
      721 taaaccacat tttcgagatg taatcataaa gtcgctgcgc gtgcgcctgg tcatcgccat
      781 aataggacgc gactcgggcg aacagatcct ggtagctctc gccgggcagc agatagcggt
      841 catccagcgt ggcgcggccg aaatcggtca gcagcgcatc gcgggaatgg tcgacacgca
      901 cctgatggcg ttcccgcatc tggatcgggg tttcgaacag ggcggcttca ggtttcgtca
      961 ttacgttcat tgggcggcct ctcgttcatc gcaaagcgag gaacataaca acatatagtt
     1021 aagccatacc gcaatcacta ctacatgtcc cgagataaga tttttcggct tgacgagtcc
     1081 cgcgccgagt catcccctgg cgccggcatc gtgtttactg tttgttcttt atgggatgag
     1141 cccaaccgag cgtcaagatg ggtatccgag ccgccgaatc ggggcagaat tgtgaaaaag
     1201 cgatggccag gatgtggcgg gattcgcacc cagtccgatg caaaaatctg gaatcagaga
     1261 agcttgcggg caaggcgctg gagcggggcg tcgaaccaga aggcggtgag ggccgcgagt
     1321 agaagcgagg cggtaagcag aaggaaaaag gtggggatgg ctggataata atggcgcgcc
     1381 gccggatggt aaaagaacca gacggcgaga atgaagcgag gaatgacatg catgaggtaa
     1441 agcggatagg acatggcgcc cagcgccgcg ccgcgccggc caaggcgcag atgaccgccg
     1501 cgttcgaggg ccgccagggc aaaaattacg atggcgaaga ccacagcggt gaaaggcaaa
     1561 cgcggggcga gcggatataa tgtgccccat tggtcgaggc gcagcagcag ggcgagcgcg
     1621 atgaccgcgc tgccgagcag cggccacaat atataggagg gcggcttcag ccgggcgaag
     1681 gcccagctgg cacccagccc ggcgaagaac atgatattgt cgagcgcgaa gagatgggtg
     1741 gaaacgccga cgggcaggaa gggcagcagg gtggcgggcc cgccccagcc gcgcagcttg
     1801 tgataccagg atgcagccag cgccagcccc cagacgggca gcagaacgcg ccgcgcatag
     1861 ggcagcaggg ccaagccgaa aataagatag aagagcaact catagcgcag cgtccaggcc
     1921 ggtgggttga gttcggcgat gttgctggtg aagggggcga gagtaagatt
//
LOCUS       DASQCV010000415         2243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1750927, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000415 DASQCV010000000
VERSION     DASQCV010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1750927"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..662)
                     /locus_tag="VEQ16_06295"
     CDS             complement(<1..662)
                     /locus_tag="VEQ16_06295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PCRF domain-containing protein"
                     /protein_id="HYP63477.1"
                     /translation="MSLPDKLNRILARAEELRFILSGQLGGEEFVKASKELAELEPVE
                     EKITALRDAEKHFSEAEALMADPEMKELAEQEYHELKGQIPELELAVRLALLPKDEAD
                     ERAGILEIRPAAGGDEAGLFAAELFAAYQKYAATQGWRFEVLEYDESELGGLRGAMAE
                     ITGKSVFAKLKFESGVHRVQRVPATETQGRIHTSTITVAVLPEAEEVDVDVNETDLRI
                     DV"
     gene            complement(659..1861)
                     /locus_tag="VEQ16_06300"
     CDS             complement(659..1861)
                     /locus_tag="VEQ16_06300"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HYP63478.1"
                     /translation="MTWHGTSVADAASSSAVLGSGVEPQAELYDVLARHRFTELDGLR
                     GIASLMVGINHVFGIPAVSVAATGTSLMIASLSGVINGSLAVDLFFIMSGFFLAGMLE
                     NFKRRAVLVFYIRRLVRLVPPAIVSVICLYIFVEIAIAGKPGNLLDGPELVQFRADNI
                     AVPFNILLLNLPLIRHTLNPPLWTIRLEIFTSLLFPAVLFLRTRLRNAWQSFALFIAF
                     LVIAALLSRHQKMGLDVFHYLYVFYAGVLARDFGPHVAAMTRRQQYRLFSFAVLALIL
                     TGEFVPLFQHPISFDLPVTVFGTILVVLLAYGDIPAVRGVMNSPAVQFFGRISYSFYL
                     MSWLTIMGLGGLILRTDAITRHGVTAILLAALPCCTIAGIGLAYMLHVAVEQPSVALS
                     RYLGMKLK"
     gene            complement(1833..>2243)
                     /locus_tag="VEQ16_06305"
     CDS             complement(1833..>2243)
                     /locus_tag="VEQ16_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011631312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HYP63479.1"
                     /translation="VTNALGAQGTVMAGGRYDGLVEQMGGPNVPGVGWGAGIERLSML
                     IAAPPAAAVPVAVIPMGADCEDKAVRILNDLRQAGIAAETAYSGNVKKRMERANKSGA
                     AFAVLVGEDVKLKNLASGEQADIAADDLARYLRG"
BASE COUNT          503 a          715 c          633 g          392 t
ORIGIN      
        1 taaacgtcaa tccgcaagtc ggtttcgttc acatccacat ccacctcctc cgcctccggc
       61 agcacggcga cggtaatggt ggaggtatgg atgcgcccct gcgtctcggt cgccggcacg
      121 cgctgcacgc gatgcacgcc ggactcgaat ttcagcttgg cgaacaccga tttaccggtg
      181 atttccgcca tggcgccgcg caagccgccg agctcgcttt catcatattc cagcacctcg
      241 aaccgccagc cctgcgtcgc ggcgtatttc tggtaggcgg caaacagctc cgccgcgaac
      301 aacccagcct catcaccacc cgcagcaggg cggatttcca ggatgccagc gcgctcatcc
      361 gcctcatcct tgggcagcag cgctagccgc acggccagct ccagctcggg gatctgcccc
      421 ttcagctcat gatattcctg ctccgccagc tctttcattt ccggatcagc catcagcgcc
      481 tcggcctccg aaaaatgctt ttcggcatcg cgcaaggcgg tgatcttctc ctccaccggc
      541 tccaattcag ccaactcctt ggaagccttc acgaattcct cgcctccgag ttgacctgag
      601 aggatgaaac gcaactcctc cgcgcgggca agaatgcggt tcagtttgtc aggcagactc
      661 attttaattt cattccaaga taacggctga gcgccacgct gggctgctcg acggcaacat
      721 gcagcatata agcaaggcca attcccgcga tggtgcagca ggggagtgct gccagcaaaa
      781 tagccgtgac gccgtggcgg gtgatggcat cggtacgcag gatcagcccg cccaggccca
      841 tgatcgtcag ccagctcatg aggtagaaac tataggagat gcgcccgaaa aactgcacgg
      901 ccgggctgtt catcaccccc cggacggcgg gaatatcgcc ataagccagc agcaccacaa
      961 ggatggtgcc gaaaacggtc acgggcagat cgaacgagat gggatgctga aacagcggga
     1021 caaattcacc ggtcaggatc aacgccagca cggcaaagct gaataacctg tattgctggc
     1081 gccgcgtcat ggccgcgaca tgcgggccga aatcgcgcgc caggacgccg gcataaaaca
     1141 catacagata atggaataca tcgagcccca ttttctggtg gcggctcagc agcgcggcga
     1201 taacgaggaa agcgatgaag agagcaaagc tttgccaggc attgcggagg cgcgttctca
     1261 aaaaaagcac ggcggggaac agcagggagg taaaaatctc cagccggatc gtccatagtg
     1321 gcgggttgag cgtgtgccgg atcaggggca ggttcagcaa caggatgttg aacggcacgg
     1381 caatattatc ggcgcggaat tgaaccagtt ccggcccatc cagcaaattg ccgggtttac
     1441 cggcgatagc gatttcaaca aatatatata ggcaaatcac tgagacaatg gcgggcggta
     1501 caagccgtac caaccggcgg atataaaaca cgagaaccgc gcggcgctta aaattctcca
     1561 gcatgccggc cagaaaaaaa ccgctcatga tgaagaagag atcgacggcg agcgaaccgt
     1621 tgatgacgcc gctcagcgac gcgatcatga ggctcgtgcc agttgcggcg acgctcacgg
     1681 cggggatgcc gaacacgtgg ttgatcccga ccatcagcga cgcgatgccg cgcaagccat
     1741 cgagctcggt gaacctgtgc ctggccagaa cgtcatatag ctcggcctgc ggctcgacgc
     1801 cgctgcccaa caccgcgctg ctgctggcag catcagccac ggaggtaccg tgccaggtca
     1861 tccgcagcaa tatccgcctg ttcgccgctg gcgagattct tgagcttcac atcctcaccc
     1921 accagcacgg cgaaagcggc gccggattta ttggcgcgct ccatgcgctt cttcacattg
     1981 ccggaatagg cggtttccgc cgcgataccg gcttggcgca gatcattgag aattcttaca
     2041 gccttatcct cgcaatccgc ccccatggga atcaccgcga caggcacggc ggcggctggt
     2101 ggcgccgcga tgagcatgga aagccgctca atccccgcac cccagcccac gcccggcacg
     2161 ttgggtccgc ccatctgttc caccagcccg tcataacgtc ctcccgccat caccgtgccc
     2221 tgcgcgccca gcgcgttggt gac
//
LOCUS       DASQCV010000416         1576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_255652, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000416 DASQCV010000000
VERSION     DASQCV010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255652"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..659)
                     /gene="rnc"
                     /locus_tag="VEQ16_06310"
     CDS             complement(<1..659)
                     /gene="rnc"
                     /locus_tag="VEQ16_06310"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011631699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HYP63480.1"
                     /translation="MTRKAPPPAGSPAEALTQAVAWLGHEFARPELLAEALTHRSAAG
                     AKGVGSNERLEFIGDRVLGLIVAEWLIERFPHEQEGKLGPRLAALVSKPALATIAEAH
                     GVADMISVAPGEARRGVSAQANVLADALEAMIGALYLDAGLKAARGFVRRVMEDTVEA
                     QAAPPKDPKTALQEWALKLALPLPAYSVVEQSGPSHAPSFMVRVVVGEASAEARAGAK
                     RA"
     gene            complement(656..1444)
                     /gene="lepB"
                     /locus_tag="VEQ16_06315"
     CDS             complement(656..1444)
                     /gene="lepB"
                     /locus_tag="VEQ16_06315"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HYP63481.1"
                     /translation="MARNNRKQDGGLGGSFVEFVKTIFWAGLIAVAIHTFWFEPFYNP
                     SGSMVPTLLVGDYLVVNKFAYGYSRFSFPFSPPLFSGRWPAGISPKRGDVVVFRPPGA
                     LDEDYIKRVIGLPGDTIQMQNGDLFINGQQVPRTDAGLYSDDSDGFGSPVLARDYIET
                     LPGGRQHAILKRTNQPEMIDGIDPNNTPVYTVPQGDLFMMGDNRDDSEDSRFLDGTVG
                     YVPVENLIGPARLIFFSIDLQHPFWEIWYWPFEIRWGRMFKSIS"
BASE COUNT          316 a          553 c          464 g          243 t
ORIGIN      
        1 gcacgcttgg cccctgccct ggcctcggcg ctggcctcgc ccaccaccac cctaaccatg
       61 aaagagggcg cgtgcgaggg ccccgattgc tccaccacac tataagcagg cagaggtaag
      121 gcgagcttga gcgcccattc ctgcaaggcc gtcttcgggt ctttcggcgg cgcggcctgg
      181 gcctccaccg tgtcttccat cacccggcgc acgaagccgc gcgccgcctt cagcccggca
      241 tcaagataca gcgccccgat catcgcctcc agcgcatccg ccagcacatt ggcctgggcg
      301 gaaacgcccc gccgcgcctc gccgggcgcc accgagatca tgtccgccac tccatgcgcc
      361 tcggcaatcg tcgccaaagc cggcttggac accagggccg ccaggcgcgg ccccaatttg
      421 ccctcctgct catgcggaaa acgctcaatg agccattccg ccacgatcag ccccagcacg
      481 cggtcgccga tgaattccag ccgctcattc gagcccacgc ccttggcccc ggccgcggag
      541 cgatgggtca gcgcctccgc cagcaactcc ggccgagcga actcatggcc aagccaggcc
      601 acggcctggg tgagcgcctc ggccgggctg ccggccggcg ggggcgcctt ccgtgtcacg
      661 agatggactt gaacatccgg ccccagcgaa tctcgaacgg ccagtaccag atttcccaga
      721 acggatgctg caaatcgatg gagaagaaga tgagacgggc gggcccgata agattctcca
      781 ccggcacata gcccaccgtg ccgtcgagga agcgcgaatc ctcggaatcg tcgcggttat
      841 cgcccatcat gaagagatcg ccctgcggca cggtgtaaac cggcgtgtta ttcgggtcga
      901 tgccgtcgat catctccggc tggttggtac gcttgaggat ggcatgctgc ctgccgccgg
      961 ggagcgtctc aatatagtcg cgggccagta ctggggagcc gaatccgtcg ctgtcatcgc
     1021 tatacagccc cgcatcggtg cgcggcacct gctggccgtt gatgaagaga tcgccattct
     1081 gcatctggat ggtatcgccc ggcaggccga tgacgcgctt gatataatcc tcatccagcg
     1141 caccgggcgg gcggaacacc accacatcgc cacgcttggg gctaatgccc gccggccagc
     1201 ggcccgagaa caagggcggc gagaagggga aggagaagcg cgaatagcca taggcgaact
     1261 tgttcaccac caggtaatcg ccgaccagca aggtcggcac catcgagccc gaggggttat
     1321 agaacggctc gaaccagaag gtgtggatcg cgaccgcaat cagcccggcc cagaagatcg
     1381 tcttcacaaa ctcgacgaag gacccgccga gtccgccatc ctgtttccgg ttattccgcg
     1441 ccataaaccc tcgccgccat gtggagtgcc gcatcaaaca aggcgctagc tccttgtcaa
     1501 gaaacgcaac taccgcacca gatggaaaaa ccgcccccag cgcagctcaa cgggccattt
     1561 ccaggcttcc caccag
//
LOCUS       DASQCV010000417         2792 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_92158, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000417 DASQCV010000000
VERSION     DASQCV010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92158"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..281)
                     /locus_tag="VEQ16_06320"
     CDS             complement(<1..281)
                     /locus_tag="VEQ16_06320"
                     /EC_number="2.4.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424673.1"
                     /note="Catalyzes the reversible phosphorolysis of
                     5'-deoxy-5'- methylthioadenosine (MTA) to adenine and
                     5-methylthio-D-ribose-1- phosphate; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioadenosine phosphorylase"
                     /protein_id="HYP63482.1"
                     /translation="MSGAKQPVIGVIGGSGLYNIEGLTGTKWVKVDTPWGDPSDEFLT
                     GSYEGTKVVFLPRHGRGHKLSPSSLNFRANIDALKRLGVTDILSMSAVGS"
     gene            394..1050
                     /locus_tag="VEQ16_06325"
     CDS             394..1050
                     /locus_tag="VEQ16_06325"
                     /inference="COORDINATES: protein motif:HMM:NF025729.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4412 domain-containing protein"
                     /protein_id="HYP63483.1"
                     /translation="MRRLIPAVAATLIAVPAWADQMPNLIPEHDVTGTYLITSQGESH
                     TMTVQYSKSANVLRLDPQGGQGYILYDFAAHDAKMVMPDMQRYIDQPALASRAQALQG
                     GNGDNVTITKTGTETIAGHNCTDYIATDKTKGTSSSLCVTDDGVLLKLSSANANAVAQ
                     SISYDNVPDANVQLPAGYTQLTIPQMPGVGSMGTMSNMPVMPSMPGAPGVPNIPGVNQ
                     "
     gene            complement(1074..2570)
                     /locus_tag="VEQ16_06330"
     CDS             complement(1074..2570)
                     /locus_tag="VEQ16_06330"
                     /inference="COORDINATES: protein motif:HMM:NF021436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2142 domain-containing protein"
                     /protein_id="HYP63484.1"
                     /translation="MSEICNDLPPVALGPGAVHPSWWRHLSSLLDRLTRPRWLAALFL
                     VCALPTGLGCAMLTPLGAPPDEMAAADRADGLRLGQFTNARFPGAGSEVMIDSGMSDL
                     NLAMDSLIFASYDVKGNVPPSLMARAAAIRWSGRKIYCATQMVMYFPVFYVPVALSLW
                     AGKAAGLGPLYALYLARVLMLFSYAAMGAAALRLARFGRGLIFVALTLPTSIVLGASC
                     SQDGQLIAACALAAALLTRATPAAWGGALALLTIVALGKISYALLMLFCLAPLRAPGL
                     ARRAGAVALAALAPASWLLHIHGLGFAPWPWPPYHPGPLWPGDRTIWLHDAQPANNIR
                     VLLAHPAQILLLPLRTLAAHWHDTWRRILACVSVDFLLLRPWEYPCLVAALGFSALAP
                     AGAGQRWRPVDAALGLLILLGCIMSVELSLYLTYTPAGETLIAGVQGLYFLLLLPFFI
                     FPLSYLMGWMPWRNLPAGLFCLPAMALALINEVALPSFMFHLFRMAGP"
BASE COUNT          637 a          907 c          837 g          411 t
ORIGIN      
        1 gaccccacgg cagacatgga gagaatatcc gtcaccccca gccgcttcag cgcatcgata
       61 ttggcgcgga aattgagcga ggagggggag agcttatgcc cgcgcccatg ccgcggcagg
      121 aacacgacct ttgtgccttc atagctgccg gtgagaaact cgtcggacgg atcgccccag
      181 ggcgtatcca ccttcaccca tttggtgccg gtgagcccct cgatattata cagccccgac
      241 ccgccgatca cgccaatgac cggctgtttt gccccgctca tgctttgctc cccgaagaga
      301 tagagatatg ccgcccgctt tacgggtttt taccgcgttt ggccatggcg gtgccttggc
      361 ttatgttgcc gcaccaaaac caggaggatc gacatgcgcc gcctcatccc cgccgtggct
      421 gccacgctta tcgccgtgcc cgcctgggcg gaccagatgc ccaatctcat ccccgagcat
      481 gacgtcaccg gcacctacct catcaccagc cagggcgagt cccacacgat gacggtgcaa
      541 tacagcaaat ccgccaatgt gctgcgcctc gacccgcaag gcggccaggg ctacatcctg
      601 tatgatttcg ctgcacatga tgcgaaaatg gtgatgccgg acatgcagcg ctacatcgac
      661 cagcccgctt tggccagccg cgcccaggcc ctgcagggcg gcaatggcga taatgtcacc
      721 atcaccaaaa ccggtaccga aaccatcgcc ggccataact gcaccgacta tatcgccacc
      781 gacaaaacca aaggcaccag ctccagcctc tgcgtcaccg atgacggcgt gctgctgaaa
      841 ctctcctccg ccaacgccaa cgccgtggcg cagagcatct cctacgataa tgttccggat
      901 gcgaacgtgc agctgcccgc tggctacacg caactgacca taccgcaaat gccgggcgtg
      961 ggcagcatgg ggactatgag caacatgccg gtgatgcctt ccatgccggg cgcaccgggc
     1021 gtgccgaata ttcccggtgt gaatcagtaa aaggccgcgt ttgcggcgca gcgctacggc
     1081 ccggccatgc ggaagagatg gaacatgaag gagggcaagg ccacttcatt gatcaaggcc
     1141 agtgccatcg cgggcaggca gaataatccg gcgggcaggt tgcgccatgg catccagccc
     1201 atgagatagg acagaggaaa gatgaagaat ggcagcagga gcagaaaata gagcccttgc
     1261 acgccggcaa tcagtgtctc acccgccggc gtataggtaa gatagagcga cagctccaca
     1321 ctcatgatgc agccaagcag gatgagcagg cccagcgcgg catccaccgg ccgccagcgc
     1381 tgcccggcgc cagccggtgc cagggctgaa aaacccagcg ccgccacgag gcagggatat
     1441 tcccatggcc ggagcagcag gaaatcgacc gagacacagg cgagaattct gcgccaggta
     1501 tcatgccaat gtgccgccag cgtacgtaac ggcagcaaca gaatttgcgc cgggtgcgcc
     1561 agcagcacgc ggatattatt cgccggctgc gcatcatgca gccagatggt tctgtcgccg
     1621 ggccaaagcg ggccgggatg gtagggcggc cagggccacg gggcgaaccc cagaccatgg
     1681 atatgcagca gccaggaagc gggtgccagc gccgccagcg ccacggcgcc tgcccgccgc
     1741 gccaatcccg gcgcgcgcag cggggcaagg caaaacagca tcagcaaggc gtaggagatt
     1801 ttacccaggg caacgattgt gagaagcgcc agcgctccgc cccaggcggc aggcgtggcc
     1861 ctggtcagca gcgccgcggc cagcgcacag gcggcaatca gctgcccatc ctggctgcat
     1921 gaggcaccca gaacgatgct tgtcggcaat gtcagtgcaa cgaagatcag cccgcggcca
     1981 aaacgcgcca ggcgcaatgc agccgccccc atggcggcat agctgaacag catcagcacc
     2041 cgcgccagat agagcgcata aagcggcccc agcccggccg ccttgcctgc ccacaggctc
     2101 aatgcaacgg gaacataaaa taccgggaaa tacatgacca tctgcgtcgc gcaatagatt
     2161 ttccgcccgc tccagcgaat ggcggcggca cgagccatca agctgggcgg cacgttccct
     2221 tttacgtcat aggaggcgaa tatcaggcta tccatggcca gattgagatc ggacattccg
     2281 gaatcgatca tcacctctga gccagcaccg ggaaagcggg cgtttgtgaa ctgaccaaga
     2341 cgcaatccat cggcacggtc ggcggctgcc atttcgtccg gcggcgcgcc gagcggtgtc
     2401 agcatggcac agcccagccc ggtgggcagg gcgcagacca ggaacaatgc ggcaagccat
     2461 ctcgggcggg tcaggcggtc gagcagggag gataaatggc gccaccagga agggtgcacc
     2521 gcgccggggc ccaaggcaac cgggggcagg tcgttgcaaa tctcactcat tgccccgtgg
     2581 cttacacgtg ctgtccgggg gtgtgaagtc catgtaattt tatgctcatg aaagctgggc
     2641 cggaggcgcg acctagcgca agaatcgccg gaaccgccgc agcgacagcc agaacaacac
     2701 cgcgccgatg gcaatcagcg ccaaaaattg cggccacaca atcgccagcc ccgcgccacg
     2761 aaacagcacc gcctgtgcca atatcacaaa at
//
LOCUS       DASQCV010000418         1516 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1252591, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000418 DASQCV010000000
VERSION     DASQCV010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1252591"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1407)
                     /locus_tag="VEQ16_06335"
     CDS             complement(<1..1407)
                     /locus_tag="VEQ16_06335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HYP63485.1"
                     /translation="MMSSLLIANRGEIARRIIRTAKRLGIRTIAVYSDADANMPFVRE
                     ADEAVAIGPAPARESYLVQSKILEAARATNATAIHPGYGFLSENAEFAEAVQAAGIIW
                     VGAPPAAIRAMGQKDAAKQLMLAAGVPVTPGYMGDDQSPARLHKEADSIGYPVLIKAV
                     AGGGGKGMRRVDAGEAFLDALASCQREAKASFGDDRVLIEKYITGPRHIEVQVFGDLH
                     GNVVHLFERDCSLQRRHQKVIEEAPAPGMDEATRAALCAVAVKAAQAINYVGAGTIEF
                     IADASEGLRAGRIWFMEMNTRLQVEHPVTEMITGQDLVEWQLRVASGEKLPKLQDELS
                     INGWAMEARLYAENPATGFLPSIGPLQRLRFPDGIRVDSGVEEGGEVTPFYDPMIAKL
                     ITHAPARKGAAAQLEKACGSLEIWPVKTNAGFLARTAADEDFLSGRIDTGFIERHGER
                     LVAGSEPSAPVLQAAARAL"
BASE COUNT          249 a          472 c          517 g          278 t
ORIGIN      
        1 cagcgcgcgc gcggcggcct gcagcacggg cgcggagggc tcgctgccag cgacaaggcg
       61 ctcgccatgg cgctcgatga agccggtatc gatgcggccg ctgagaaaat cctcatccgc
      121 cgccgtgcgg gcgaggaaac cggcattggt cttcaccggc cagatttcca ggctgccaca
      181 ggctttttcc agttgcgccg ccgccccttt gcgagccggc gcatgggtga tgagcttggc
      241 gatcatcggg tcgtagaagg gcgtcacctc gccgccttcc tccacgccgc tatcgacgcg
      301 gatgccgtcc ggaaaccgca ggcgctgcaa tggcccgatg gagggcagga agccggtggc
      361 gggattctcg gcataaagcc gcgcctccat ggcccagcca ttgatggaga gctcgtcctg
      421 cagcttcggc agtttctcgc cgctcgccac gcgcagctgc cattcgacga gatcctgccc
      481 ggtgatcatt tcggtgacgg gatgctccac ctgcaggcgg gtattcatct ccatgaacca
      541 gatgcggccg gcgcgcaggc cttcggatgc gtcggcgatg aattcgatgg tgccggcgcc
      601 aacatagttg atggcctgcg ccgctttcac cgccacggcg cagagcgcgg cgcgggtggc
      661 ttcatccatg cctggcgccg gggcttcctc gatcaccttc tggtggcggc gctgcagcga
      721 gcaatcgcgc tcgaacagat gcacgacatt gccgtgcaga tcgccgaaca cctgcacctc
      781 gatatggcgt gggccggtga tgtatttctc gatgagcaca cgatcatcgc cgaacgaggc
      841 tttggcttcg cgctggcagc tggcgagggc atcgagaaac gcctcgcctg catccacgcg
      901 ccgcatgcct ttgccgccgc cgcccgccac ggccttgatg agcacgggat agccgatgga
      961 atcggcttcc ttatgtagcc gcgcggggga ttggtcatcg cccatatagc ctggtgtcac
     1021 cggtaccccg gcggcgagca tcagctgttt ggctgcgtcc ttctggccca tggcgcggat
     1081 ggcggccgga ggcgcgccga cccagatgat gccggccgcc tgtacggctt cggcgaattc
     1141 cgcattctcg gagagaaaac cataaccggg atggatggcg gtggcgtttg ttgctctcgc
     1201 tgcctcaaga atttttgact gcacgagata ggattcacgc gccggggccg ggccgatggc
     1261 aacagcctcg tccgcctcgc gcacgaaggg catgttggcg tcggcatcgg aataaaccgc
     1321 gatggtgcgg atgccgaggc gcttggcggt gcggatgatg cggcgggcga tctcgccgcg
     1381 attggcgatg aggagggagg acatcatggc cattacatcc tgaataggcc gaactggggt
     1441 tgttgcggta tcggtgcatt cagggtggcg gagagggcga ggcccagcac gtcgcgcgtc
     1501 tgcaccgggt cgatga
//
LOCUS       DASQCV010000419         3884 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_423007, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000419 DASQCV010000000
VERSION     DASQCV010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3884
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_423007"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..393)
                     /locus_tag="VEQ16_06340"
     CDS             complement(<1..393)
                     /locus_tag="VEQ16_06340"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63486.1"
                     /translation="MAHEAGTHEIGSSKRPDLPLAVIVGAGGLGMAMARRLGLDYRLL
                     LADRDDAHLARQILALRDAGYDATGQICDVTNPEHVAQLAAAADQPRALAHVVGLSPA
                     MGDFRAIMAVNLIGAARVANAFQPIMGPS"
     gene            complement(467..652)
                     /locus_tag="VEQ16_06345"
     CDS             complement(467..652)
                     /locus_tag="VEQ16_06345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63487.1"
                     /translation="MTPEFLAALAPEQTAKRRDEPYPRKKLGFLTAALLWALRLYVFI
                     AVPLVIYAFARAVMQPT"
     gene            complement(649..1986)
                     /locus_tag="VEQ16_06350"
     CDS             complement(649..1986)
                     /locus_tag="VEQ16_06350"
                     /inference="COORDINATES: protein motif:HMM:NF013715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HYP63488.1"
                     /translation="MMEPLASLEEQDVTREDVLRASDRVKVQRSRAQGRWLRLFWLLS
                     GPGLLVMLGENDGPSMLSYATTGAVYGVGFFIPFILLTFVMAYLVQEMTVRLGVATYR
                     GHAELIFQRLGPFWGYFAMGDLVFGNLLTLVTEFVAIQAGGMYFGLPRALSVGIGVAI
                     VFSSFALRRYHTWERGMLLLAAGNLLFIPAALLAHPHPGPVLHAVASWGPLPGGFNKK
                     SLVLMLANIGATVTPWMIFFQQSAVVDKGLTPADVTQARLDTALGALLAAIAAIAALI
                     AAAPLYHAHIDVTALSSGADFATALKPYLGHAGAAMFALGMTEAGLVAAMTISTSSSY
                     ALAETLSVGRSLNLDFASGRWFYGAAILSTLVAAAVVLIPGAPLLAMILAVNVIATLL
                     MAPALLFLLLLVNDREIMGNLANGWAANLAGGAIILGIAVAGAIYGLMTVSSL"
     gene            2051..2536
                     /locus_tag="VEQ16_06355"
     CDS             2051..2536
                     /locus_tag="VEQ16_06355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HYP63489.1"
                     /translation="MNPMPGTDIEAQLAAADALCAKNGTQLTALRREVLDLILRAQAP
                     LTAYQLLDQLKSTRKSAVPPTIYRALDFLIENRLVHRIERLNAFIPCAEADHDHADAQ
                     FLICHQCGAVTEMEDHGVSAALAAAAAARGFTPSRAIVELDGLCALCGQPDTAQRPAH
                     R"
     gene            complement(2448..3257)
                     /locus_tag="VEQ16_06360"
     CDS             complement(2448..3257)
                     /locus_tag="VEQ16_06360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HYP63490.1"
                     /translation="MFAPYLLDGWIVATLVALATGFAGFFVVLRREAFAAHALPMAAF
                     PGAAAAALFGLAQFAGLTAAALFGVLLLLWLKRGQRNDAATALALAALLGLGALFLSL
                     SGRYANAVYGLLFGQVFATGPADIPPALALAILVPLTLGLLFRPLLLGALSPDLARLR
                     GLDGAWSNVAFLAILAMAASFALPVTGALLVFSLMTGPAGAACALARSPRAALLLSIA
                     LALALIWAALALSILTGWPAGFFTGVLASALYLAARIRRTARPARQSRGSV"
     gene            complement(3260..>3884)
                     /locus_tag="VEQ16_06365"
     CDS             complement(3260..>3884)
                     /locus_tag="VEQ16_06365"
                     /inference="COORDINATES: protein motif:HMM:NF013143.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HYP63491.1"
                     /translation="FFGLGLLGSLGLAGRRRGDSDLAAGILLGAGLGFTALLLHFAVS
                     MRGVSGAAVTVMFGSLFSAPPGAGFLVLASACVGFLVLIAIHRPLLLASLNEELAILR
                     GAKTRLLAGLFLVLLALAVTLSAMSVGAILSTALLIGPSAAALRLTRRPFAAMALAAI
                     LGVACSWGGVALAYASYNWTPGRVWPVSFFITACILLTYAASSWRRA"
BASE COUNT          836 a         1175 c         1403 g          470 t
ORIGIN      
        1 gcttgggccc atgatgggct ggaatgcatt cgctacccga gcggcaccga tcagattgac
       61 cgccatgatg gcgcggaaat cgcccatggc gggggagagc ccgacgacat gggcaagcgc
      121 ccggggctga tccgcggctg cggccagttg ggcaacatgc tccgggttgg tgacgtcgca
      181 gatctggccg gtggcatcgt agccggcatc gcggagcgca agaatctggc gggcgagatg
      241 ggcatcgtcg cggtcggcga ggagcagcct gtaatcgagc ccgagccgcc gcgccatggc
      301 catgccgagc ccgccggcgc cgacgatgac cgccaacggc aaatccggcc gtttgctgct
      361 gccgatctca tgcgtcccag cctcatgcgc catatctacc tcccgcttcg ttatagagtg
      421 gtctctttat gcaggagtcg cacggccatg gccagatgcg ggccgattaa gtcggctgca
      481 tcaccgcgcg ggcaaaggcg tagatgacca gcggcacggc gatgaagaca taaagccgca
      541 aggcccaaag cagcgcggcg gtcagaaatc cgagtttctt acgcggataa ggttcgtcgc
      601 gccgctttgc ggtctgttct ggcgccaggg cggccagaaa ttccggggtc acagagaact
      661 caccgtcatg agaccataga tggccccggc cacggcgatt ccaagaatga tggcgccgcc
      721 agcgagattg gcggcccagc cattggcgag gttgcccatg atctcgcggt cattgaccag
      781 caggagcagg aaaagcagcg ccggagccat gagcaaggtg gcgatgacgt tgacggcgag
      841 gatcatggcc aggagcggcg cgccggggat gagcaccacg gcggcagcga ccaaagtgga
      901 gaggatggcg gcgccgtaga accagcggcc ggaggcaaaa tcgagattga gcgagcggcc
      961 gacggagagg gtttccgcga gcgcgtagga ggagctggtg gaaatcgtca tggcggcgac
     1021 gaggccggct tccgtcatgc ccagggcaaa catcgcagcg cctgcatggc cgagataagg
     1081 cttcagggcg gtggcgaaat cagcgccaga ggagagcgcg gtgacgtcga tatgcgcgtg
     1141 ataaagcgga gcagcggcga tgagagcggc gatggcggcg atggcggcga ggagcgcgcc
     1201 gagggctgtg tcgagccgcg cttgggtgac gtcggccggg gtgagaccct tatccacaac
     1261 cgcgctctgc tgaaagaaga tcatccaggg cgtgacggtg gcgccgatat tggccagcat
     1321 caacaccagg cttttcttgt tgaacccgcc tggcagcgga ccccagctgg ccacggcatg
     1381 cagcacgggg ccgggatgcg gatgggcgag cagggctgcg gggatgaaga gcagattgcc
     1441 ggcggcgagc agcagcatgc cgcgctccca ggtgtggtag cggcgtaagg cgaaggagct
     1501 gaacacgatg gcgacgccga taccaaccga aagggcgcgc ggcaggccga aatacatgcc
     1561 acccgcctgg atggcgacga attccgtcac cagcgtgagc agattgccga acaccaggtc
     1621 gcccatggcg aaatagcccc agaacgggcc gaggcgctgg aagataagct cggcatggcc
     1681 acgataggta gcgacaccga gccgcaccgt catctcctgc acgagatatg ccatgacgaa
     1741 ggtgagcagg atgaagggaa tgaagaaacc cacgccatag accgcgccgg tggtggcgta
     1801 ggagagcatg gagggaccgt cattctcgcc cagcatcacc aggaggccgg ggccggagag
     1861 cagccagaac aggcgcagcc aacggccctg ggcacggctg cgctggacct tcacccggtc
     1921 gctggcgcgc agcacgtcct cacgcgtcac gtcctgctct tcaaggctcg ccaggggctc
     1981 catcatgacc aaaacctagc tatgggcagg ggggcgtcaa gccctcccct gccccggttt
     2041 tatcccctat atgaacccta tgcccggcac cgatattgaa gcccagctcg cggcggcgga
     2101 cgcgctctgc gccaagaatg gcacgcaact gaccgctttg cgccgcgagg tgctggatct
     2161 gatcctgcgc gcgcaagcgc cgctcaccgc gtaccagctg ctcgaccagc tgaaatcgac
     2221 gcgcaaatca gccgtgccgc cgaccatcta ccgggcgctg gattttctca tcgagaaccg
     2281 gctggtgcac cggatcgagc ggctgaacgc cttcatcccc tgcgccgagg cggaccatga
     2341 ccatgcggac gcgcaattcc tcatctgcca tcaatgcggg gcggtaacgg agatggagga
     2401 tcatggcgtg tcggcggcgc tggcggcggc ggcggcggcg cggggcttta caccgagccg
     2461 cgcgattgtc gagctggacg ggctgtgcgc cttatgcggg cagccagata cagcgcagag
     2521 gccagcacac cggtaaagaa gccggccggc cagccggtga ggatggagag cgccagagcg
     2581 gcccagatga gagccagagc gagcgcgatg gagagcagca gcgccgcgcg cgggctgcgt
     2641 gcgagggcgc aggcggcgcc ggccgggccg gtcatgaggc tgaagaccag aagcgcgcca
     2701 gtaacgggca gggcgaagga agccgccatc gccagaatcg cgaggaaggc cacattgctc
     2761 caggcaccgt ccaggccgcg caaacgcgcg aggtcgggcg agagcgcgcc gagcagcagc
     2821 gggcggaata gcaggccgag cgtcaggggc acgaggatgg caagggccag agcaggcggg
     2881 atatcggcag ggccggtggc aaaaacctgg ccaaagagca ggccatagac ggcattggcg
     2941 taacggccgg acaggctcag gaacaaggcg cccagcccga gcagggcggc aagggcgagg
     3001 gcggtggcgg catcgttacg ctggccgcgc ttgagccaga gcagcagcag aacgccgaaa
     3061 agcgcggccg cggtgagccc ggcaaattgt gccaggccga acagagcggc cgcagccgcg
     3121 ccggggaagg ctgccatggg cagggcatgg gcggcgaaag cttcgcgccg cagcaccacg
     3181 aaaaaaccgg cgaaaccggt ggccagcgcc acgagcgtgg ccacgatcca gccatcgagc
     3241 agatagggtg cgaacattct tacgctcgcc gccaggaaga agctgcgtag gtgagcagaa
     3301 tacaagcggt gatgaagaag ctcaccggcc agacgcggcc cggagtccag ttgtaggagg
     3361 cataggcaag cgccaccccg ccccagctgc aggccacgcc gagaatggcg gccagcgcca
     3421 tggcggcaaa aggccggcgc gtgaggcgca aggcagcggc ggaggggccg atgagcagag
     3481 cggtggagag gatggcgccc acgctcatgg cggagagggt gacggccagg gccagcagaa
     3541 ccagaaacag cccggcgagg agccgcgttt tcgcaccacg caagatggcc agttcctcat
     3601 tgagcgaggc cagcaaaagc gggcggtgga tggcaatgag gaccagaaac ccgacgcaag
     3661 cgctggccag gaccagaaaa cccgcgccgg gcggcgcgga aaaaagcgag ccgaacatca
     3721 ccgtgacggc ggcacccgac acgccgcgca tgctgacggc gaaatgcagc agcaaggcgg
     3781 tgaagccaag cccggcgccg agcaaaatgc cggcggcgag atcggaatcg ccacgccgcc
     3841 gccctgcgag cccgaggctg ccaagcaggc cgaggccaaa gaag
//
LOCUS       DASQCV010000420         1520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_754417, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000420 DASQCV010000000
VERSION     DASQCV010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_754417"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..477
                     /locus_tag="VEQ16_06370"
     CDS             166..477
                     /locus_tag="VEQ16_06370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter"
                     /protein_id="HYP63492.1"
                     /translation="MNTIALYYTSLMVAILIGIAGQIALKSGAYGSATLIAQFLNPLT
                     VMGIAPYVVAAIWYVVALKKIPVSIAFPSVAASYAVVAVLAHPSWNEPFGWPQGRDRT
                     D"
     gene            complement(492..1415)
                     /locus_tag="VEQ16_06375"
     CDS             complement(492..1415)
                     /locus_tag="VEQ16_06375"
                     /inference="COORDINATES: protein motif:HMM:NF033545.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HYP63493.1"
                     /translation="MRSWLGAAKTERRMAFRADVILAIAEGLSNEAAAERVGTRPATV
                     SKWRGRFAQAGLAGLRDASRSGKPRQYQDEHERRLLAALDEPPPAGYGRWDGSLLARH
                     LGDISKHQIWRVLRRHEISLARRRSWCISTDPAFAQKAADIVGLYLQPPDNAVVFSVD
                     EKPHIQALERAQGWLKLPNGTAVTGFSHAYKRHGTTTLFAALDVATGLVKTGHYQRRR
                     RVEFLDFMNRVVAEHAGREIHVILDNLNTHKPKHDRWLARHKNVHFHFTPTHASWLNQ
                     VEVWFSVLSAKALTGASFTSPRQVRDQNADG"
BASE COUNT          279 a          491 c          456 g          294 t
ORIGIN      
        1 ggtgctgttg ctttcggggg tacagctcat catgctaggc atcatcggcg aatatctcgg
       61 gcggctctac ctgagcgcta acggcaaacc tcaatcaatc atcaaagagg tgcgccgcag
      121 caattctttc gcctcaggcg cgcaggctga cctgcctgag cgcgcgtgaa cacgatcgcg
      181 ctctattaca ccagtctcat ggtcgcgatt ttgattggga tagccgggca aatcgcgctg
      241 aagtcggggg catacgggtc agcgactctc atcgcgcaat ttctcaaccc actgacggta
      301 atgggtatcg cgccatacgt cgttgctgcc atctggtacg tcgtggcgct gaaaaagatc
      361 cccgtgtcga tcgcctttcc atcggtggcc gcgagttatg ccgtcgttgc cgtcctcgcg
      421 catccgtcat ggaacgagcc gttcggctgg ccgcaaggcc gggatcgcac tgattagcag
      481 cgatgtggtg ctcatccatc agcattctga tcgcggacct ggcgtggcga ggtgaaactc
      541 gcgccggtca aggctttggc ggagagaacg gagaaccaga cctccacttg attgagccag
      601 gaggcatggg tcggcgtaaa atggaagtgg acgttcttgt gccgcgccag ccagcggtcg
      661 tgtttgggct tgtgggtatt gagattgtcc aagatcacat ggatctcgcg gccggcatgt
      721 tcggcaacca cgcggttcat gaaatccagg aactcgacgc gccggcggcg ctgataatgg
      781 ccggtcttga ccaagccagt ggcaacatcg agcgcggcga acagggtcgt ggtcccgtga
      841 cgtttgtagg cgtggctgaa cccggtcacc gctgtgccat tgggcagctt caaccagccc
      901 tgggcgcgct ccagagcctg gatgtgcggc ttctcgtcga ccgaaaacac cacggcgttg
      961 tcgggcggct gcaagtagag cccgacaatg tcggccgcct tctgcgcaaa cgccggatcg
     1021 gtgctgatac accaactgcg ccgccgcgcc agcgagatct catgccggcg cagaacccgc
     1081 cagatctgat gtttggagat gtcacccaga tgcctggcca gcaagctgcc gtcccagcgc
     1141 ccgtaccccg ctggcggcgg ctcatccaaa gccgccagga ggcgccgctc atgctcgtcc
     1201 tggtactgcc ggggcttgcc gctgcgcgac gcgtcgcgca gacccgccaa acccgcctgc
     1261 gcaaagcggc ctcgccactt gctgaccgtc gccgggcgcg tgcccactcg ctccgccgcc
     1321 gcctcgttgc tcagcccctc ggcaatggcc aggatcacgt ccgcccgaaa cgccatgcgc
     1381 cgctcagtct ttgccgcgcc cagccaactt ctcaaggccg cccgctgctc gtccgtcaat
     1441 accactgccg ccgctctcat aacggcaagt tatcatatcc gccaatttat gcaactaggt
     1501 actagtcgca tgaggacagc
//
LOCUS       DASQCV010000421         3070 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3241933, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000421 DASQCV010000000
VERSION     DASQCV010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3070
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3241933"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..713
                     /locus_tag="VEQ16_06380"
     CDS             <1..713
                     /locus_tag="VEQ16_06380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HYP63494.1"
                     /translation="KISPLTLLGIGVEYYAKPVGYAERLRQIEETSDQILQVFGPLCY
                     LITSDQYDSMLAQVFEEQAEAQGADRVTARAAAEQLLSVMISRKRMYASRKPSIIGIL
                     TIGSIQKFLAEGIAPAANVSEPLRVAAREAAAREIELVASLMESEPIGLQLGLMAHGE
                     PNGPFTLLRSRERATLAINPFPADAPPNQQSGVAMITSAEDAVAAHQRVSELAWRDAI
                     KGAAAAERVRALVAASRQ"
     gene            710..1543
                     /gene="sseA"
                     /locus_tag="VEQ16_06385"
     CDS             710..1543
                     /gene="sseA"
                     /locus_tag="VEQ16_06385"
                     /EC_number="2.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004792 - thiosulfate sulfurtransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-mercaptopyruvate sulfurtransferase"
                     /protein_id="HYP63495.1"
                     /translation="MSPLITAGDLAALIGQGGVKLLDATYYLPTEGQDAQALFRHAHI
                     PGARFFDLDAIADLTSGLPHMLPSPEVFATAMAGLGISSSDHIIVYDQRGIFSAPRLW
                     WMLRVFGHDNVQVLDGGLPAWTEEGGATESGTQAPAAPGQFTASFRSKMVRNLDDMRN
                     NLKSRAALVLDARSAARFYAEVPEPRPGMRSGHMPGAVNIPFSDLLDDGKFLPADKLR
                     TLFFNNGVDGSDPLVASCGSGVTACVLALGLSLAGLPEPAIYDGSWAEWGSLQDTQIA
                     V"
     gene            complement(1583..3001)
                     /locus_tag="VEQ16_06390"
     CDS             complement(1583..3001)
                     /locus_tag="VEQ16_06390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYP63496.1"
                     /translation="MREYLKFYIDGQWVAPAALKTADVINPATEEVSGKIALGSVADV
                     EKAVAAARRAFGSWSQTTRETRLELLQNIQSEYTRRQGELGEAIMEEMGAPSALANGF
                     HVFLGAGHLQTAIEVLREFKFEELRGTTRIVKEPIGVCALITPWNWPMNQTTVKTFPA
                     LAAGCTMILKPPQLAPYSAQILAEIIHSAGIPAGVFNMVQGSGALIGTALSTHPEVDM
                     ISFTGSEGVGVEIAKNAAPTVKRVCQELGGKSPFIVLDDAALAKNVADATATMMGNSG
                     QTCSAGSRLLVPAARLEEAIKASADAANAVTVGDPRGNVAMGPVVSKGQYNIIQEYIE
                     KGLAEGAQLIAGGPGRPDGLEKGWFVKPTVFVTNNDAVIAREEIFGPVLVIIPYKDVE
                     DAVAIANDSNFGLAGYVSGTDVEQCRAVARRLRAGWIGINGGFDFHAAFGGYKRSGNG
                     REWGEFGFHEYLEIKSLLGYAA"
BASE COUNT          525 a         1105 c          898 g          542 t
ORIGIN      
        1 tgaaaatctc ccccctcact ttgctcggca tcggcgtgga atattatgcc aagcccgtcg
       61 gctatgccga gcgcctgcgc cagatcgagg aaacctccga ccagatcctg caggtcttcg
      121 gccctctctg ctacctcata acctccgacc agtatgattc gatgctggcg caggttttcg
      181 aggagcaggc cgaagcgcaa ggcgccgacc gcgtcaccgc ccgcgccgcc gccgagcagc
      241 tgctcagcgt gatgatctcg cgaaagcgca tgtatgcctc gcgcaaaccc tccatcatcg
      301 gcattctcac catcggctcc atccagaaat tcctggccga aggcatcgcc ccggctgcca
      361 atgtcagcga accgctgcga gtcgccgcgc gcgaggccgc ggcgcgcgag atcgagcttg
      421 tcgctagcct catggagagc gaacccatcg gcctgcagct cggcctcatg gcccatggcg
      481 agcccaacgg ccccttcact ttgctgcgct cgcgcgagcg cgccaccctt gccatcaacc
      541 ctttccccgc cgatgctccg cctaaccaac aatccggagt cgccatgatc accagcgccg
      601 aagacgccgt cgccgcccac caacgcgttt ccgaactcgc ctggcgcgac gccatcaagg
      661 gtgccgccgc cgccgaacgc gtgcgcgccc tcgtcgcggc ctcccgccag tgagccccct
      721 cataacggcc ggcgacctcg ccgcccttat tggccagggc ggcgtgaaac tgctcgacgc
      781 cacctattac ctgcccaccg aaggccagga cgcgcaggcc ctctttcgcc acgcccatat
      841 tcccggcgcg cgcttcttcg accttgatgc catcgccgac ttaacctcgg gcctgccgca
      901 tatgctgccg agcccggaag tcttcgccac cgctatggca gggctcggca tctcctccag
      961 cgaccacatt attgtctacg accagcgcgg catcttttcc gcgccgcgcc tgtggtggat
     1021 gctgcgggtg ttcggccacg acaacgtgca ggtattagac ggcggcctgc ccgcctggac
     1081 cgaagagggc ggcgccaccg aaagcggcac acaagctccg gccgcgcccg gccagtttac
     1141 cgccagcttc cggagtaaga tggtgcgcaa cctcgatgat atgcgcaaca atctgaaaag
     1201 ccgcgccgcc ctcgtgctcg atgcccgctc cgccgcgcgt ttctacgccg aagtgcccga
     1261 accgcgccct ggcatgcgca gcggccatat gcccggcgcc gtcaacatcc ccttcagcga
     1321 cctgctcgac gacggcaaat tcctgcccgc tgacaaactg cgcaccctct tcttcaataa
     1381 cggcgtcgat ggctccgacc ccctcgtcgc ttcctgcggc tccggcgtca ccgcctgcgt
     1441 cctcgccctc ggcctcagcc tcgccggcct gcccgaaccc gccatctatg acgggtcctg
     1501 ggccgaatgg ggctccctgc aggacacaca gatcgctgtt tgaagtggcg gggggcattg
     1561 cccccttgcc ttcaagttgc cttcaagccg cgtagccgag gagcgacttg atctcgagat
     1621 attcgtggaa gccgaattcg ccccattcgc ggccgttgcc ggagcgtttg tagccaccga
     1681 aggcggcgtg gaagtcgaac ccgccattga tgccgatcca gccggcgcgc aggcggcggg
     1741 cgacggcgcg gcattgttcc acgtccgtgc cgctgacata gccggcgagg ccgaaattgc
     1801 tgtcgttggc gatggcgacg gcgtcttcca catccttgta ggggatgatg acgagcacgg
     1861 gcccgaagat ttcctcgcgg gcgatgaccg cgtcattgtt cgtcacgaac acggtgggtt
     1921 tgacgaacca gcctttctca aggccgtccg gacggcccgg accaccggcg atgagctggg
     1981 cgccctcggc gagacccttc tcgatatatt cttgaatgat gttgtactgg cccttggaca
     2041 ccacgggccc catggcgaca ttgccgcgcg ggtcgccgac ggtgacggcg ttggcagcgt
     2101 cggcggaggc cttgatggcc tcttccaggc gcgcggcagg caccagcagg cgcgagccgg
     2161 ccgagcaggt ctggccggaa ttgcccatca tggtcgcggt ggcgtcggcc acgttcttgg
     2221 ccagtgcggc gtcatccagc acgatgaacg ggctcttgcc gcccagctcc tgacagacgc
     2281 gcttgacggt cggggccgcg ttcttggcga tttccacgcc cacgccctcg gagccggtga
     2341 aggagatcat gtccacttcc ggatgcgtgg agagcgcggt gccgatgagc gcgcccgagc
     2401 cctgcaccat gttgaacacg ccggccggaa tgccagcgga atggatgatc tcggccagaa
     2461 tctgcgcgga atagggcgcc agctggggtg gcttcaggat catggtgcaa cccgcggcca
     2521 gggccgggaa ggtcttcacc gtggtctggt tcatcggcca gttccagggc gtgatgagcg
     2581 cgcatacgcc gatcggctcc ttcacgatgc gggtggtgcc gcgcagctcc tcgaacttga
     2641 actccctcag cacctcgatg gccgtctgca gatggccggc acccagaaac acatggaagc
     2701 cattcgccag agccgaaggc gcgcccatct cttccatgat ggcctcgccc agctcgccct
     2761 ggcggcgcgt atattcggac tggatgttct gcagcagctc aagccgcgtc tcgcgcgtgg
     2821 tctgcgacca gctgccaaaa gcccgccgcg ccgccgccac agccttctcc acatccgcca
     2881 cagagcccag cgcgatcttg ccggaaactt cctccgtcgc cggattgatc acatccgccg
     2941 tcttcaacgc cgctggagca acccattggc catcaatgta aaatttcaga tattcgcgca
     3001 tgaccactcc ctaagtctct gttcagcatc ccaaacagca catcccccag ccctcgtaca
     3061 gagcctccga
//
LOCUS       DASQCV010000422         1657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2081982, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000422 DASQCV010000000
VERSION     DASQCV010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1657
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2081982"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..>1657)
                     /locus_tag="VEQ16_06395"
     CDS             complement(64..>1657)
                     /locus_tag="VEQ16_06395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63497.1"
                     /translation="AQPEWRPWLAMLARQSRVSRLRHPGMDMWIATERLGQFQALWPE
                     ARLEPIVTVPEAYASQEWSAETACIEILRGRLEGLGPVTTAQLSAPLSCEPDFIDAAL
                     MALEVEGFALRGHFTSGATEEEWCVRGLLARIHNYTIKRLRAEIEPVAARDFLRFLFT
                     WQHASAEARMEGPDAIGAALMQLEGFEAPAGAWESEILPARLADYEPAWLDDECLAGR
                     TTWARLKPRPARASTARGASPVRATPVTLLPRRHVAFWQSLLPETEAVQPSVRAQAVM
                     DVLREHGASFFDEIITGAGLLRQQVEEALAELVALGLVTSDSFGGLRALLAPSEQRSS
                     PRHRRRAADGMERAGRWSLTRKTAPAPSASGALEHIAHSLLLRYGIVFWRVLEREADW
                     LPPWRDLLRVYRRMEARGEIRGGRFVAGFSGEQFALPDAIGLLRDTKRKQSAGDWVSL
                     SGADPLNLAGILTPGPKLPALTGNRVLYRDGLPVASLAGGETFFYESMAPAEEWQARK
                     RLLRGIHGPAVHDVASATSHSI"
BASE COUNT          299 a          559 c          522 g          277 t
ORIGIN      
        1 catggccgga aagtgaagtg gtcgttctaa ttcacaatca aaaatgcggg ggttcgatat
       61 gtatcagatg gaatgcgacg tggcactggc aacatcatgt acggcaggtc catggatgcc
      121 gcgcagcagc cgcttcctgg cctgccactc ttccgccggc gccatggatt cgtagaaaaa
      181 tgtttcgccg ccggcgagcg atgccacagg taggccgtcg cgatacaata cccggtttcc
      241 cgtcaatgcg gggagttttg gtcctggcgt gagaatgccc gcaagattga gcgggtcggc
      301 gccggaaagt gagacccagt cgcccgcgct ttgcttgcgc ttagtgtcgc gcaagagccc
      361 gattgcgtca ggcaaggcga attgttcgcc ggaaaacccg gcgacgaacc gcccgccgcg
      421 tatctcgccg cgcgcttcca tgcgccggta gacgcgcagc aaatcccgcc atggcggcag
      481 ccagtccgcc tcgcgctcca acacgcgcca gaagacgatc ccgtaacgaa gcagcaggct
      541 gtgcgcgata tgttcaagag caccggaagc ggacggggcc ggtgcggtct tacgtgtgag
      601 cgaccagcgt ccggcacgct ccatgccatc ggcggcgcgc cgccggtgcc ggggtgagga
      661 gcgctgctcg gaaggtgcca gcaacgcacg cagcccgccg aaactgtccg aggtgacgag
      721 gccgagcgcc accagctctg ccaaggcctc ttccacctgc tgccgcagca gcccggcgcc
      781 agtgatgatt tcgtcaaaga acgacgcgcc atgttcgcgc aggacatcca tgaccgcctg
      841 cgcccgcacg ctcggctgca ccgcctctgt ttccggcagc aggctttgcc agaacgcgac
      901 atggcggcgc ggcagcaatg tcaccggcgt ggcgcgcacg gggctggcgc cgcgtgctgt
      961 gctggcgcgg gccgggcgtg gcttcaacct tgcccaggtg gtgcgcccgg cgaggcattc
     1021 atcatccagc caggcgggct cgtaatccgc gaggcgcgcc ggcaatattt cgctttccca
     1081 cgcgccggcc ggcgcttcga atccttcaag ctgcatcagc gccgcgccga tggcgtccgg
     1141 cccctccatc cgcgcttccg ccgaggcgtg ctgccaagtg aagagaaagc gcaggaaatc
     1201 gcgtgcggcc acgggttcga tttccgcgcg cagacgcttg atagtgtagt tatggatgcg
     1261 cgcgagcagc ccgcgcacgc accattcctc ttcggtcgca ccagatgtga aatgcccgcg
     1321 cagtgcaaag ccttccactt ccagcgccat cagcgcagca tcaatgaagt ccggctcgca
     1381 ggacaaaggc gcggagagct gtgccgttgt caccggaccc aacccttcca gccggccgcg
     1441 caggatttca atgcaagctg tttccgcgct ccattcctgg ctggcatatg cctcaggcac
     1501 cgtaacgata ggttccagcc gcgcctcggg ccagagcgcc tggaattgcc ccagccgttc
     1561 cgtggcaatc cacatatcca tgcccggatg gcgcagccgc gacacccggc tctggcgtgc
     1621 cagcatggcc agccatggcc gccattccgg ctgcgct
//
LOCUS       DASQCV010000423         3595 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2248710, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000423 DASQCV010000000
VERSION     DASQCV010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3595
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2248710"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(40..660)
                     /locus_tag="VEQ16_06400"
     CDS             complement(40..660)
                     /locus_tag="VEQ16_06400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GbsR/MarR family transcriptional regulator"
                     /protein_id="HYP63498.1"
                     /translation="MGSRWGINRTVGQIYALLYISGRPLPADEITEALNFSRSNVSMG
                     LKELQSWRLVKLQHLPGDRREHFSTPDDIWQIVRILAEERRRREIDPTLSVLRDLLLK
                     KPGNDDERAIQGRLQEMHDLIELLTRWSEDVQRLETQQLTQLLRLGGGIIRLLDLKNA
                     LPLLGTKRRRTRRALAGGGGLDEPDDDPDGLHDGIHEEIQDDIQDD"
     gene            896..1435
                     /locus_tag="VEQ16_06405"
     CDS             896..1435
                     /locus_tag="VEQ16_06405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63499.1"
                     /translation="MTEPNGDKAAAPRPSLVAGTGMLVAIFGFSALWVVLGGGLLHLH
                     SFFASFVFLWYWGVMDRLAFNRLPAALLGALLGVALSWQLAYFSARYGTEGLAIGVGI
                     IALAVFIQLMNWAPAVVNLCAMLFLAILTAPQFSGHTDYVDAGATIIVSAVYVSVLVV
                     AAKRIMAARAGGKIAAETV"
     gene            1557..1982
                     /locus_tag="VEQ16_06410"
     CDS             1557..1982
                     /locus_tag="VEQ16_06410"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP63500.1"
                     /translation="MTSIDETRDILAICALKARYCRLLDSKQWDTWRELFTEDYELDI
                     SGAGGGAPIKGRDAVMASVLASIGQAATAHQVHFPEIELKGDEALAVFPMQDRVIFGA
                     GKPSITGYGHYHDRLVKKNGEWKIAALKLTRLHVDVQPA"
     gene            1998..3137
                     /locus_tag="VEQ16_06415"
     CDS             1998..3137
                     /locus_tag="VEQ16_06415"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HYP63501.1"
                     /translation="MSKLKVGIVSANWGALAHLPAWRTLSDSVEVTSICTSRQETAEK
                     AAKQFGVARPFWSYEAMANDPDIDIIDAGTNPVLREKIVTAALNGGKHAVNQIPFAVS
                     AEAAQGLDALRRGKGLQGAAAASVMGLPHLGFMKELIEAGEIGEVFQVHCSWQMSFFL
                     QIQPGFPYTWFGKSGLGVSVTRNNGSHMLHALRYLFGPIDSVSANIKIQLKDWKLPDG
                     EIQHVETDDTSHALLNFSSGAMGMFSTSWTAADSPGFFIEAFGSKGRLRLSALRYPSI
                     DSAKLYVSRNESPHHEPTGAEVTVPERFFMADGRVVTLGQEDLYNGAQRVSLARVFES
                     LTRAIKGKGEPLPGFARAAEIQGLVEAMYESGRCRAWVDTSHLAG"
     gene            3289..>3595
                     /locus_tag="VEQ16_06420"
     CDS             3289..>3595
                     /locus_tag="VEQ16_06420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012976668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HYP63502.1"
                     /translation="MQVRGAKMRVEERMTESEAAALDKVPLRVTNPQRIPSKRYYDAA
                     FFELERERFWPHVWQMACRLEEIPEIGDYAEYKILDKSVIIVRTKSGVKAFSNACRHR
                     "
BASE COUNT          655 a          984 c         1248 g          708 t
ORIGIN      
        1 tgcgggccgg gcggggcgcc tggcggatgt tcaggatcgt cagtcgtctt gaatgtcgtc
       61 ttgaatctct tcgtgaatgc cgtcgtgaag tccgtccggg tcgtcgtccg gctcgtccag
      121 gccgccccct ccggccaggg cccggcgcgt ccggcgccgt ttggttccca gcagaggcag
      181 ggcgttttta aggtccagca ggcggatgat accaccgccg agccgtaaca gttgcgttaa
      241 ttgttgtgtc tcaagccgct gtacatcctc ggaccagcgc gtgagcagct cgatgaggtc
      301 gtgcatctcc tgcagccggc cctggatggc gcgctcatcg tcgttgccgg gctttttcag
      361 cagcaggtcg cgcagcacgg agagggtcgg gtcgatctca cggcggcggc gctcctcggc
      421 caggatgcgc acgatctgcc agatatcgtc gggggtggag aaatgctcgc ggcggtcgcc
      481 ggggagatgc tgcagcttca ccagccgcca gctttgcagc tccttgaggc ccatggaaac
      541 gttggagcgg gagaaattga gcgcctcggt gatttcatcc gccggcaggg ggcggccgga
      601 gatatagagc agggcgtaga tttgcccaac ggtgcggttg atgccccacc ggctgcccat
      661 ttctccgaaa tgcctgatga aggcatctga aagtggcgac aattccaaaa cttaatcttt
      721 cagtcttttc tgaaaagacc aaaatacccg cctcctcgct ttgtcaaggc gctggggctc
      781 atggcctggc caggcaggcg cggctacggt ttccgggggg agtaatattg gacagaatgc
      841 cccctcgcag gcaaataggg tgtactcatt gccgaagcta gaggggaagc ggaaaatgac
      901 ggaacctaac ggcgacaaag ctgccgcgcc gcgcccgagc ctggtggcgg ggacagggat
      961 gctggtggcg attttcggtt tctcggcgct gtgggtggtg cttggcggcg ggctgctgca
     1021 tctgcactcg tttttcgcga gcttcgtctt tctttggtac tggggcgtga tggatcgcct
     1081 ggcgttcaac cgcctgccgg cggcgctgct cggggcgctg ctgggtgtgg cgctgtcctg
     1141 gcagcttgct tatttctccg cgcggtatgg gacggaagga ttggcgatcg gggtggggat
     1201 tatcgccctg gccgtgttca tccagctgat gaactgggcg ccggccgtgg tgaatctgtg
     1261 cgcgatgctg ttcctcgcca tcctcaccgc gccgcaattc tcgggccata cggattatgt
     1321 ggatgccggg gcgaccatca ttgtcagcgc ggtctatgtg tccgtgctag tggttgccgc
     1381 caagcgcatc atggcggcgc gggcgggtgg aaaaatagcg gcggaaaccg tctgacgcca
     1441 ttcgcatcgg tgatgcgatg tttgccactg ggccatgcgg accggcggca aaggatgctt
     1501 aactccggcc cataaacgga atggcccacg gataatgggc cgcatgcggg gcggatatga
     1561 caagcatcga tgagacgcgg gatattctgg cgatctgcgc gctgaaggcg cgctattgcc
     1621 ggctgctgga tagcaagcaa tgggatacct ggcgcgagct gttcaccgag gattatgaac
     1681 tggacatctc tggcgccggg ggcggcgcgc caatcaaggg acgcgacgcg gtgatggcct
     1741 cggtgctggc ctccatcggc caggcggcga cggcgcacca ggtgcatttt ccggaaatcg
     1801 agctgaaggg cgacgaggcg ttggccgttt tcccgatgca ggaccgggtg attttcggcg
     1861 cgggcaagcc ctccatcacc ggctacgggc attatcatga ccggctggtg aagaagaatg
     1921 gcgaatggaa gatcgcggcg ctgaagctga cgcgcctgca tgtggatgtg cagccggcgt
     1981 aagggaggag cagaaaaatg agcaagctga aagtcggaat tgtcagcgcc aattggggcg
     2041 cgctggcgca tctgcccgcc tggcgcacgc tgagcgatag cgtggaagtg acctccatct
     2101 gcacctcgcg ccaggagacg gcggagaagg cggcgaaaca attcggcgtg gcgcggccct
     2161 tctggtccta tgaggcgatg gccaatgatc cggatatcga catcatcgat gccggcacga
     2221 acccggtgct gcgcgaaaaa atcgtcaccg ccgcgctgaa tggcggcaag catgcggtga
     2281 accagattcc cttcgccgtc tcggcggagg cggcgcaggg gctggacgcg ctccggcgcg
     2341 ggaaagggct gcagggtgct gcggcggcga gcgtgatggg gttgccgcat ctgggcttca
     2401 tgaaggagct catcgaggcg ggcgagatcg gcgaggtgtt tcaggtgcat tgctcctggc
     2461 agatgtcctt cttcctgcag atccagcctg gctttcccta tacctggttc ggcaagtccg
     2521 ggcttggcgt gagcgtgaca cgcaataatg gctcgcacat gctgcacgcg ctgcgctatc
     2581 tgtttgggcc gatcgattcc gtttccgcga atatcaagat tcagttgaag gactggaagt
     2641 tgccggacgg cgagatccag catgtggaaa cggatgatac cagccacgcg ctgctgaatt
     2701 tttcctctgg cgccatgggg atgttctcaa cctcctggac ggcggcggat agccccggct
     2761 ttttcatcga ggcgttcggc agcaaagggc ggttgcggct cagcgcgctg cgctatccga
     2821 gcatcgatag cgcaaagctc tatgtgagca ggaatgaatc gccgcatcat gagccaaccg
     2881 gcgcggaagt gacggtgccg gagcgtttct tcatggccga tgggcgcgtg gtgacgctgg
     2941 ggcaggagga tttgtataat ggcgcgcagc gcgtctcgct ggcgcgcgtg ttcgagagcc
     3001 tgacccgcgc catcaaaggc aagggcgagc cgctgccggg ttttgcgcgc gcggcggaaa
     3061 tccaagggct ggtcgaggcc atgtatgaat ccggccggtg ccgggcctgg gtggatacgt
     3121 cgcatctcgc ggggtgagaa gtggcagggg gaagcaagca gagtggcttt cccggtcatg
     3181 gccgcgcctc gacaggacgg gacggattgc taggatcgga cgcttgccgg tgaagctgcg
     3241 cttaagatcg atcaaggcaa accccgtgag catgacaagg cccgcatcat gcaggtgcgc
     3301 ggcgcgaaaa tgcgtgtgga ggaacgaatg acggagagcg aagcagccgc gttggacaag
     3361 gtgcccttgc gggtgactaa tccccagagg atcccgtcga aacgttatta cgacgcggcg
     3421 ttctttgaac tcgagcgcga gcgcttctgg ccgcatgtgt ggcagatggc ctgccgcttg
     3481 gaagagattc cggaaatcgg cgattatgcc gagtacaaga tccttgataa atccgtcatc
     3541 attgtgcgca ccaaatcggg tgtgaaggcg ttctccaatg cctgccggca tcgcg
//
LOCUS       DASQCV010000424         1590 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3242445, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000424 DASQCV010000000
VERSION     DASQCV010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3242445"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..390
                     /locus_tag="VEQ16_06425"
     CDS             <1..390
                     /locus_tag="VEQ16_06425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63503.1"
                     /translation="AQGLAALVHEIRQAPIEPEMPVPAILIVCPPPIQSPRGVMAAKF
                     AGAERRCVGLAEAYSEVANSLCCYFFDAGSVTSSSRVDGVHLDRDQHLTLGAALAAVV
                     EPILTTDDRAAISGQEGTGTSATSGRS"
     gene            617..1282
                     /locus_tag="VEQ16_06430"
     CDS             617..1282
                     /locus_tag="VEQ16_06430"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HYP63504.1"
                     /translation="MPETATLIPLGNIELAADISVPDRADGVVLFAHGSGSSRHSPRN
                     RQVAGALNRGGIGAILVDLLTEAEETVDLETAELRFDIPMLGRRLGAITGWIHSQPDL
                     KNLKLGYFGASTGAAAALVAAADRPKAVQAVVSRGGRPDLAGAALQRVEAPTLFIVGG
                     DDPVVLDLNYWAMARLPHETVHKLEIIQGAGHLFEEPGTLDKVAALARDWFRAHLSSH
                     SHA"
BASE COUNT          294 a          483 c          504 g          309 t
ORIGIN      
        1 gctcagggac tggccgccct ggtccacgag atacggcaag cgccgattga gccggagatg
       61 cctgttcccg cgatcctgat cgtctgcccg ccgccaattc aatcgccacg gggggttatg
      121 gcggcgaagt tcgccggggc cgagcggaga tgcgtgggac tcgcggaggc ttactccgag
      181 gtcgccaatt ccttgtgttg ctatttcttc gatgccgggt cggtgacttc ctccagcagg
      241 gtcgatggcg ttcacctgga tcgcgatcag cacttgacgc tgggggcggc tctagctgca
      301 gtggtggagc cgatcctgac tacggatgat cgggcagcga tcagcggcca ggaaggaact
      361 ggaacgtcag cgacgagcgg acgatcctga aatcccgctc atccacggtg gaattcggtt
      421 aacccgcaag cgttcgcccg accgcgatcg tcacacagtc ttcctcacca tgcacataag
      481 tggtaacctg ccgagccagc cacctcgatg gggccacagg aaaaccaaat ccttggctga
      541 gcgagcattg tgccggcgag cctggagcgg cggatggcgc ttcaattgcc agttgaacgg
      601 gtgagagagc cagcccatgc cagagaccgc cacactcata ccgctcggaa acattgagct
      661 tgccgcggac atttccgttc ccgaccgcgc cgatggcgtt gttctgtttg cccatggcag
      721 cggcagcagc cgccacagcc ctcgaaaccg ccaggtggcc ggcgcgctca atcgtggcgg
      781 cattggcgcc attttggtcg acctgttgac cgaagcggaa gaaactgtcg atctcgaaac
      841 agccgagttg cgtttcgaca taccgatgct aggacgccgc cttggagcga ttactggatg
      901 gattcactct cagccggatt taaagaattt gaagctcggt tattttggcg ccagcaccgg
      961 cgccgccgcg gccttggtcg ccgccgcgga ccgtccaaaa gctgtgcagg ccgtggtctc
     1021 ccggggaggg aggccggacc tggcgggcgc ggcgctccag cgagtggaag cgcccacgct
     1081 gttcatcgtg ggcggagacg atcccgtggt gctggatctg aactattggg cgatggcccg
     1141 gcttccgcat gagaccgtgc acaagctcga aatcattcaa ggggccggtc acttgttcga
     1201 ggagcccgga actctagata aagtggcggc tttggcgcgc gattggttcc gcgcccacct
     1261 ttcttcccat tctcacgcct gaggctacga gatagccgcg ctgccgcgtc cggggcgctc
     1321 acagtaccat gaaatttaag cttggtggaa aactctctct actgctcggc ctgcggcgcg
     1381 cctgtcccgg cggctgcgcg gatctgcggg cgttgcgcgc atcccatgaa cgcggcgcag
     1441 ccgaatccag agataaaccc cagtgacaag cccaaacctg actggatcaa gcgcctgggt
     1501 ccgctcggcg tggtcctgac ggcggcgctc aagttcaaga ccgcaattct gttgctgttc
     1561 gcgaaaggca agtttttgct gctgggtttg
//
LOCUS       DASQCV010000425         1798 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2248861, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000425 DASQCV010000000
VERSION     DASQCV010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1798
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2248861"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..626)
                     /locus_tag="VEQ16_06435"
     CDS             complement(<1..626)
                     /locus_tag="VEQ16_06435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003050050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP63505.1"
                     /translation="MRLANIYQLGVKELRGLFRDPMMLILIVYAFTVSIYSASKAIPE
                     TLNHAAIAIIDEDHTPLSGRITAAFRPPYFGLPDMIDWQQMPGRLDTGTDTFVLVIPP
                     NFQRDVLAGRAPALQLNVDATRMTQAFSGSGYIQTIVSGEVSEFLQRYRSAPSLPVNL
                     VLRARFNQNLDKGWFGAVNNVINSITMLSIILTGAALIREREHGTIEHL"
     gene            complement(629..>1798)
                     /locus_tag="VEQ16_06440"
     CDS             complement(629..>1798)
                     /locus_tag="VEQ16_06440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007092097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP63506.1"
                     /translation="EAPPVPETAHGGRSLFSTRRMFAYTQREALELRRDPIRATMALV
                     GSLLLMIVIGYGVNLDVEHLSFAVLDHDNTSISRDYILQISGSRYFDEEAPLQSHADM
                     DQRMRQGNLSLAIEIPPNFGRNVMRGNDAQIGAWLDGANPTRAETAQGYVEGMHATWL
                     AQKAQQIYGRQAAQGDFSLETRFLYNPNLRSVIAMVPAVIPLLLIMIPAMLAVLSVVR
                     EKELGSIINFYVTPVTRLEFLLGKQVPYLVLGMFNFFLLVAFAVFLFRVPFTGSFLTY
                     VIAGFLYVGVATALGLLVSSFMESQIAAIFGTVLITLIPAIQFSGMIDPVSSLQGTGR
                     FIGSIYPTAYFMTISRGVFSKGLGFADLSGQILPILIAIPVLFALAAILLKKQPG"
BASE COUNT          396 a          542 c          553 g          307 t
ORIGIN      
        1 agatgttcga tcgtgccatg ctcgcgttca cgtatgagcg ccgcgcccgt aaggatgatg
       61 gacaacatgg tgatggaatt gatgacgtta ttcacagcgc caaaccagcc cttgtcgaga
      121 ttctggttga agcgcgcccg cagcacgaga ttcaccggca aactcggcgc gctgcgataa
      181 cgctgcagaa attcgctcac ctcgccggag acgatggtct gtatatagcc gctgccggaa
      241 aaagcctggg tcatgcgcgt ggcatcgaca ttgagctgca gcgccggcgc tctgccggcc
      301 agcacatcac gctggaaatt gggtggaatc accagtacga acgtatcggt gccggtatcc
      361 agccgccctg gcatctgctg ccagtcgatc atgtctggca ggccgaaata aggcgggcgg
      421 aaggcggccg tgatgcgccc ggagagcggc gtgtgatcct catcgataat ggcgatcgcc
      481 gcatgattca acgtctccgg gatcgccttg gaggcggaat agatggaaac ggtgaaggcg
      541 tacacaatga ggatcagcat catcgggtcg cggaacagcc cccgcagctc cttgacgccc
      601 aactggtaaa tattggccag gcgcatggtc agcccggctg cttcttgagc aggatggccg
      661 ccagcgcgaa cagcactgga atggcgatga gaatcggcag aatctgacca gacaggtcgg
      721 cgaatcccag ccctttcgag aacaccccgc gtgagatcgt catgaaatag gccgtgggat
      781 agatgctgcc gataaatcgc cccgtccctt gcagcgaact caccgggtcg atcatgccgg
      841 aaaactggat ggcagggatc agcgtaatca gcaccgtgcc gaaaatcgcc gcgatctggc
      901 tttccatgaa gctcgacacc agcagcccca aagccgtggc gacgccgaca tagaggaatc
      961 cggcaatgac gtaagtgagg aaactccccg tgaaaggcac acggaacaga aacaccgcga
     1021 aggccaccag caggaagaaa ttgaacatgc cgagcacgag ataaggcacc tgcttgccga
     1081 gcagaaattc cagcctggtc accggcgtga catagaaatt gatgatggag cccagctcct
     1141 tttcgcgcac cacgctcagc acggcgagca tggccgggat catgatgagc agcagcggga
     1201 tgaccgccgg caccatggcg atgacgctgc gcaggttggg attgtaaaga aaccgcgtct
     1261 ccagcgagaa atccccttgc gccgcctgcc gcccataaat ctgctgcgcc ttctgcgcga
     1321 gccaggtggc gtgcatgccc tccacatagc cctgcgccgt ctccgcccgc gtcgggttgg
     1381 cgccatcgag ccaggcgccg atctgcgcat cgttgccgcg catcacgttg cggccgaaat
     1441 tgggtggaat ctcgatggcg aggctgagat tcccctggcg catgcgctgg tccatatcgg
     1501 catggctctg cagcggcgcc tcctcgtcga aatagcgcga gccggaaatc tgcaggatat
     1561 aatcgcggct gatggaggta ttgtcgtggt ccagtaccgc gaaggagaga tgctccacat
     1621 cgagattcac gccatagccg atgacgatca tcagcagcag gctgccgacc agcgccatgg
     1681 tggcgcggat cgggtcacgc cgcagctcca gcgcctcgcg ctgcgtatag gcgaacatcc
     1741 gccgcgtgct gaacaggctg cgcccgccat gcgccgtctc cggcacgggc ggcgcctc
//
LOCUS       DASQCV010000426         3041 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1752397, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000426 DASQCV010000000
VERSION     DASQCV010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3041
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1752397"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1092)
                     /locus_tag="VEQ16_06445"
     CDS             complement(<1..1092)
                     /locus_tag="VEQ16_06445"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP63507.1"
                     /translation="MLDPLLSDRKFWPLFTTQFLGSFNDNLFKNALVVLALFQLSAKA
                     GAVLVAVSGGLFLLPYAVVSATAGQLADAHEKSRSIVWIKFWELGLMFLALAGFLTSS
                     IPLLLTVLLGLGLQAAFFSPLKYGILPDFFEHEDLIEANGLVEAGTFAGIILGTLAGG
                     VLFALPHGALLVPAAGICISLLGIAAAFAVPQVPPAAPGLRLSWNFWSGTIALLRLAR
                     REKQVWFACLAISWFWALGATVLAAFPTLARNVLHADSHLVTLLLGIFALGVGLGSLI
                     AARAVRDASLLRLTVPAGLGISIFIADLAWTALHMGAEPGVRSLLSNWMGWRFCADLG
                     LVAIFGGMFSVPFYVLLQEKSPVTHRARMV"
     gene            complement(1085..1690)
                     /locus_tag="VEQ16_06450"
     CDS             complement(1085..1690)
                     /locus_tag="VEQ16_06450"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HYP63508.1"
                     /translation="MKHLIPDRLAAFWAALLLGTLFSLFFLDRPVALFFSHLGAWQLV
                     FSVIAAPSLLALPLSGVYFAWLVLQKLRGRMAVNPLLLAMSLATLAATAAKDELKWMF
                     GRSWPSFWLKDGVYGFAPFTNSYFYGGFPSGHTAYISAPLGVLWALRPNLRPVCCAVI
                     GLVMFGLVAADYHYVADVLAGLITGTVCAWGTLVLLRSRHA"
     gene            complement(1687..2658)
                     /locus_tag="VEQ16_06455"
     CDS             complement(1687..2658)
                     /locus_tag="VEQ16_06455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HYP63509.1"
                     /translation="MSKAVRIHATGGPEVLKWEQLPTPQPGPNEALIHHEAVGLNYID
                     VYFRTGLYKAPLPCTIGMEGAGTVLAVGDNVHGIAPGDRVAYAGGPLGAYATERLIPA
                     DRLVKLPPEIDFTIAAAIMLKGITVHFLLHRTFKVQAGQTILVHAAAGGVGLIMCQWA
                     RHIGAHVIGVVSTAEKAALIRENGAAHAIIGHANLAAEVKKITGGAMVPVVYDSIGKD
                     TFNASLDCLAPLGVLACFGNASGPVPPFDIGTLGTKGSLFLTRPAFATYTAARADLAA
                     GAAALFDVVASGAVKIQVNQTYRLEDAAAAHAALEARQTTGSTVLLP"
     gene            complement(2655..>3041)
                     /locus_tag="VEQ16_06460"
     CDS             complement(2655..>3041)
                     /locus_tag="VEQ16_06460"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008854644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HYP63510.1"
                     /translation="SIQDPSPLLRHTKAALDAYFDGEALLPTDLPLAPQGTPYRLKVW
                     AALRQIPPGETRSYAEIARIAGGSPRSVGGANAVNPIPIIIPCHRVCATTGLGGYSGG
                     EGLATKRLLLALEQRALKKQTGGKHA"
BASE COUNT          633 a          967 c         1008 g          433 t
ORIGIN      
        1 caccatgcgg gcgcggtgcg tcaccgggct cttctcctgc agcagcacat agaacggcac
       61 cgagaacatg ccgccgaaaa tcgccactaa cccgagatcg gcgcaaaaac gccagcccat
      121 ccagttcgac agcaaagatc gcaccccagg ttccgccccc atatgcaagg cggtccaggc
      181 gaggtcggcg atgaagatgc tgatgccaag gcctgccggg acggtgaggc gcagcaggct
      241 ggcatcgcgc accgcccgcg ccgctatcag cgagcccagc ccgacaccga gcgcgaaaat
      301 ccccagcagc agcgtgacga gatgggaatc ggcatgcagc acgttgcgcg ccagcgtcgg
      361 gaaagcggcg agcacggtgg cgcccagcgc ccagaaccag gaaatggcca ggcaggcgaa
      421 ccagacctgc ttttctcgcc gcgccaggcg cagcagcgcg atggtgccgg accagaaatt
      481 ccagctgagg cgcaggccgg gcgcggccgg tggcacttgt gggacggcga aggcggcggc
      541 gatgccgaga agcgagatgc aaatccccgc cgccggcacc agcagcgccc cgtgcggcag
      601 cgcgaacaac acgccccccg ccagggtgcc gagaatgatg ccggcgaagg tgcccgcctc
      661 caccagcccg ttcgcctcga tcagatcttc atgttcgaag aagtccggca ggatgccgta
      721 tttcaaagga gagaagaaag cagcctgcag cccgagcccg agcagcaccg tcagcaggag
      781 cggaatggag ctggtcagga atcccgcgag tgccaggaac atcagcccca gctcccagaa
      841 tttgatccag acgatgctgc gcgatttttc atgcgcatcg gccagctgcc cggcggtggc
      901 ggagacgacg gcataaggga gcaaaaacag cccgcccgag accgccacca gcaccgcccc
      961 tgccttggcc gaaagctgga acagcgccag caccaccaac gcgttcttga acagattatc
     1021 gttgaacgag ccgaggaact gggtggtgaa aagtggccag aatttgcggt cgctgaggag
     1081 ggggtcaagc atgacgcgaa cgtaacagca caagcgtgcc ccaggcgcaa accgtgcctg
     1141 taatgagccc agccagaaca tcggcaacgt aatgataatc cgccgccacc agcccgaaca
     1201 tcaccagccc gatgacggcg cagcagaccg ggcgcagatt gggccgcagc gcccacagca
     1261 cgccgagcgg cgcggaaata taggccgtat ggccggaggg aaagccgcca tagaaatagc
     1321 tgttggtgaa gggcgcgaag ccatagactc catccttcag ccagaaggac ggccaggagc
     1381 ggccgaacat ccatttcagc tcatccttgg cggcggtggc ggcgagcgtc gccaggctca
     1441 tcgccagcaa gagcggattc accgccatgc ggccacgcaa tttctgcagc accagccagg
     1501 cgaaatagac acctgagaga ggcaaggcga gcaaggaggg tgctgcgatg acgctgaaga
     1561 ccagctgcca cgcccctaga tggctgaaga atagcgccac gggcctgtcg agaaagaaca
     1621 ggctgaacag cgtgccaagc agcagcgcgg cccagaaggc ggccaagcgg tccggtatga
     1681 ggtgcttcaa gggagcagga cggtgctgcc ggtggtctgg cgggcttcca gcgccgcatg
     1741 ggcggcggcg gcatcctcta gcctgtaggt ttggttcacc tggatcttga cggcacccga
     1801 ggcgacaaca tcgaacaagg cggcggcgcc ggcggcgagg tcggcccgcg cggcggtata
     1861 ggtggcaaaa gcggggcggg tgaggaacaa gctccccttg gtgccgagcg tgccgatgtc
     1921 gaagggcggc accggcccgg acgcgttgcc gaaacaggcc agcacgccga gcggcgccag
     1981 gcagtccagg ctggcattga acgtatcctt gccgatactg tcatacacca ccggcaccat
     2041 ggcgccgccg gtgatctttt tcacctcggc ggccagattg gcatggccga tgatggcatg
     2101 ggccgcgcca ttttccctta tcagcgccgc cttctccgcg gtggagacca cgccgatgac
     2161 atgggcgccg atatgccgcg cccattggca catgatgagc cccacgccgc cagcggccgc
     2221 atgcacaaga atcgtctggc cggcctgcac tttgaacgtc cggtgcagca gaaaatgcac
     2281 ggtgatgcct ttcagcataa tcgccgccgc aatggtgaaa tcaatttccg ggggcagctt
     2341 caccagccgg tcggcgggaa tcagacgctc cgtggcatag gcgccgagtg gcccgcccgc
     2401 ataagctacg cggtctccgg gcgcgatgcc gtgcacatta tcacccacgg ccagaaccgt
     2461 gccggcgcct tccatgccga tggtgcaggg caggggggcc ttgtatagcc cggtgcggaa
     2521 atagacgtcg atataattca gcccgaccgc ttcatgatgg atcagcgcct cgttcggccc
     2581 cggctgcggc gttggcagct gctcccattt caacacctcc ggcccgccgg tggcatggat
     2641 gcggacggct ttgctcatgc gtgtttgccc ccggtctgtt ttttcagggc gcgttgttca
     2701 agggcaagca ggaggcgttt ggtcgccagc ccctcgccgc cggaatagcc gccaagcccg
     2761 gtggtggcgc agacgcggtg acagggaatg atgatgggaa tcgggttgac ggcattggcg
     2821 ccgccgaccg agcgcgggct gccgccggcg atgcgcgcga tctcggcata agagcgcgtc
     2881 tcgccggggg gaatctggcg caaggctgcc cagaccttca accggtacgg cgtgccttgc
     2941 ggcgccagcg gcaggtccgt gggcagaagc gcctcgccat cgaaatacgc atccagcgcc
     3001 gctttggtgt ggcggagcaa aggcgatgga tcctggatgc t
//
LOCUS       DASQCV010000427         2748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2414003, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000427 DASQCV010000000
VERSION     DASQCV010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2748
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2414003"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1350
                     /locus_tag="VEQ16_06465"
     CDS             <1..1350
                     /locus_tag="VEQ16_06465"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYP63511.1"
                     /translation="GLGIIETYLATGKERVVARFRAAATPAGAANLQARRFAVLGRGL
                     ELSYEEPVALVRGEGVFLYGPKGERFLDAYNNVPSVGHGNPVVAEAIARQMRTLCTNT
                     RYLNHTLIDYAEHLTATLPAGLSHCLFVNSGSEANDAAWRISKLVTGKAGAIVMQNAY
                     HGVTDQVAALSPYYGPLAQPQADFVQVLEAPDLYRGRFRGPDAGALYAEDADRAIAAL
                     EASGHGVAMLLIDSAFVSNGILDVPPGYFAAIAAKVRAAGGLVVGDEVQSGFGRMGAA
                     FWGFAIHGVTPDIVTMGKPMANGHPTGALVTRPELLAEFTSRIDFFSTFGGNQVSAAA
                     ALATLQYLQTHRLQENAQETGAELREGLRSLGHNSIGDVRGSGLMVGVEIIGEDGAPD
                     GAAAKRLANALRRRRVLIGTEGPHGNVLKIRPPLPFGPAHAAMLLEALDAALKGHRI"
     gene            1440..1682
                     /locus_tag="VEQ16_06470"
     CDS             1440..1682
                     /locus_tag="VEQ16_06470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63512.1"
                     /translation="MSMMILRETAQHVLRDRSARLLPVLVHQGQDGRTARAMARKMRE
                     EDEHARVGGRELLVIGLVAGLCVSARILLTWAAVTH"
     gene            1858..2421
                     /gene="ahpC"
                     /locus_tag="VEQ16_06475"
     CDS             1858..2421
                     /gene="ahpC"
                     /locus_tag="VEQ16_06475"
                     /EC_number="1.11.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003858764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0102039 - NADH-dependent peroxiredoxin
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit C"
                     /protein_id="HYP63513.1"
                     /translation="MSLINTAVKPFKAQAFKEGKFFEVTDADLKGKWSVVFFYPADFT
                     FVCPTELEDLADHYAEFQKLGVEIYSVSTDTHFAHKAWHDTSAAVGKIKYTMVGDPTL
                     AISRNFEVLIEEAGLADRGTFVVDPNGVIQIVEINAGGIGRDAKELLRKVKAAQYVAA
                     HPSEVCPAKWQEGEKTLAPSLDLVGKI"
     gene            2553..>2748
                     /locus_tag="VEQ16_06480"
     CDS             2553..>2748
                     /locus_tag="VEQ16_06480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011389171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit F"
                     /protein_id="HYP63514.1"
                     /translation="MLDDGLKAQLKTYLANVVKPVELVATLDSGPKSQELLALLTDVA
                     AQSDKVSLRTDGQNARIPSFD"
BASE COUNT          514 a          890 c          824 g          520 t
ORIGIN      
        1 gggctcggca tcatcgagac ctacctggcc acggggaaag agcgagtcgt ggcgcgattc
       61 cgcgccgccg ccacacccgc cggggctgct aacctgcagg cgcggcgctt cgccgtgctc
      121 gggcgcgggc tggaactttc ctacgaggag ccggtggcac tggtacgcgg cgagggcgtg
      181 tttctctacg gccccaaggg cgagcgtttt ctcgacgcct ataacaatgt accctcggtg
      241 ggccatggca atcctgtggt cgccgaggcc atcgcccggc agatgcgcac gctctgcacc
      301 aacacgcgct atctcaacca cacgctcatc gattatgccg agcatctcac cgccaccctt
      361 cccgcggggc tcagccactg cctgttcgtg aatagcggct cggaggccaa tgacgcggct
      421 tggcgcatct ccaagctcgt caccggcaag gccggcgcca tcgtcatgca gaacgcctat
      481 catggcgtca cggaccaggt ggcggcactc tcaccttatt acggcccctt ggcccagccc
      541 caggcggatt tcgtgcaggt gctggaggcg cccgacctct atcgcggccg tttccgcggg
      601 ccggatgccg gagcacttta tgccgaggat gcggaccggg ccatcgccgc gctggaagcc
      661 agtggccacg gcgtcgccat gctgctgatc gattcggctt ttgtgtccaa cggcatcctg
      721 gacgtaccgc ccggctattt cgccgccatc gccgcgaagg tgcgcgccgc cggcgggctg
      781 gtggtgggcg acgaggtgca atccggcttt ggccgcatgg gtgccgcgtt ctggggcttt
      841 gccattcatg gcgtcacgcc ggatatcgtc accatgggca agcccatggc caatggccac
      901 cccactggcg cgctggtgac gcggcccgag cttctcgccg aattcaccag ccgcatcgat
      961 ttcttctcca ctttcggcgg caaccaggtt tccgccgccg ccgcgctcgc caccttgcaa
     1021 tatctgcaaa cacaccggct acaggaaaac gcccaggaaa ccggcgcgga attgcgtgaa
     1081 gggctgcgca gccttggcca taattccatc ggcgatgtgc gcggcagcgg gctgatggtc
     1141 ggcgttgaaa tcattggcga ggatggcgcg ccggacgggg cggctgcgaa acgcctcgcc
     1201 aatgcgctgc ggcgccggcg cgtgctcatc ggcaccgagg ggccgcatgg caatgtgctg
     1261 aaaatccgcc cgcctctacc cttcggcccg gcccacgccg ccatgctgct ggaagccctg
     1321 gacgcggcgc tgaagggtca tcggatttaa cgattatttt tgataaaaaa atcaatttta
     1381 gtaatcacaa aatctgtcct acatctcctg cattggaatg aacccagcag gagcatgaca
     1441 tgtcgatgat gattttgcgg gagacggcgc aacacgtcct gcgcgaccgc tcggcccgcc
     1501 tgttgccggt ccttgtccat cagggccagg atggccgcac cgcgcgtgcg atggccagga
     1561 aaatgcgcga ggaagacgag cacgcccgcg tcggcggccg cgaattgctc gtgatcgggc
     1621 tggtcgccgg gctttgcgtc agcgcccgca tcctcctcac ctgggccgcc gtgacccatt
     1681 gatccatctc attgaccttg tccgtcacca ccgccaatct ggcggcggcc gtaggaaatt
     1741 tgatcgcttt taacgattgt cacggccaat aaaatcaatt tccttaatag cttgaacccc
     1801 gctagaaggc ccatgttagg tcaatactaa ctcgattaaa caagtcagga gcaaataatg
     1861 tcgctgatca acaccgccgt taagccgttc aaggcgcagg ctttcaagga aggcaagttc
     1921 ttcgaggtta ccgatgccga cctcaagggc aagtggtccg tggttttctt ctacccggcc
     1981 gacttcacct tcgtctgccc gaccgagctg gaagatctgg ctgaccatta tgccgaattc
     2041 cagaagctgg gtgtggagat ctactccgtg tccaccgaca cgcatttcgc ccacaaggcg
     2101 tggcacgaca cgtccgccgc cgtcggcaag atcaagtaca ccatggtcgg cgacccgacc
     2161 ctggccatca gccgcaattt cgaagtgcta atcgaggaag ccggccttgc tgaccgcggc
     2221 actttcgtgg tcgacccgaa tggcgtgatc cagatcgtcg agatcaatgc cggtggcatt
     2281 ggccgcgacg ccaaggagct gctccgcaag gtgaaggctg cccagtacgt cgctgcccac
     2341 ccgagcgaag tgtgccccgc caagtggcag gaaggcgaga agacccttgc tccgtcgctc
     2401 gacctcgtcg gcaagatcta agcacagcta cccgccgccg cgcctgggcg tggcggcggt
     2461 ccctcccttt tccgtacaac cgaatacctg ccgcaaacgt gttgccctgc ggcagtacgc
     2521 gacaagttat gtgtatttcc cggagctgaa tcatgttgga tgatggcctg aaggcgcagt
     2581 tgaagaccta cctggcgaat gtcgtgaagc cggtggagct ggtagcgacg ctcgattccg
     2641 gcccgaaatc ccaggaactg ctggccctgc tcaccgatgt cgcggcacag tccgacaagg
     2701 tgagcctacg caccgacggg cagaatgcgc gtatcccgtc tttcgaca
//
LOCUS       DASQCV010000428         1713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_923091, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000428 DASQCV010000000
VERSION     DASQCV010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_923091"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            80..817
                     /gene="pyrH"
                     /locus_tag="VEQ16_06485"
     CDS             80..817
                     /gene="pyrH"
                     /locus_tag="VEQ16_06485"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_024716835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HYP63515.1"
                     /translation="MSEAMMQIPQYKRVLLKISGEALMGKRDYGLDTDTVNAIAADVR
                     DVIAMGIEVCLVIGGGNIFRGVAGASAGMDRAQADYMGMLATVMNALAMQSALEKLDV
                     PTRVQTAIPMSSVCEPYIRRRAMRHMEKGRVVIFAAGTGNPFFTTDTAAALRAAEMNC
                     NAMLKGTQVDGVYSADPRKDATAKRYEELTYLDVLARDLNVMDASAISLSRENKLPII
                     VFNIHAPGAFAAVMRGEGLFTRITEPS"
     gene            830..1393
                     /gene="frr"
                     /locus_tag="VEQ16_06490"
     CDS             830..1393
                     /gene="frr"
                     /locus_tag="VEQ16_06490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003622549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HYP63516.1"
                     /translation="MADLAEIKTDLSRRMDGAIESLKREFSGLRAGRASPALLEPVKV
                     EAYGQFMPINQVATIAVPEARMITVQVWDRSMINSVVAAIRDCGLGLNPQPDGQLVRV
                     PLPVLTEERRVELAKAAGKYAEAARIAVRGVRRDGMEQIKGLQKKHEISEDDERDWSD
                     QVQKLTDGYIKRVDESLAEKEKDIRQV"
     gene            1393..>1713
                     /gene="uppS"
                     /locus_tag="VEQ16_06495"
     CDS             1393..>1713
                     /gene="uppS"
                     /locus_tag="VEQ16_06495"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HYP63517.1"
                     /translation="MADISSHPIPRHVAIIMDGNGRWAAARKLPRVAGHREGAKSVRR
                     VIEAAIGAGVHYLTLFAFSSENWARPAEEVADLTFLMKHYLRSELAELHEQGVRLVVI
                     GERER"
BASE COUNT          307 a          477 c          595 g          334 t
ORIGIN      
        1 acagcacaat ccccgaatcg gcgtccccca ggttacaacc gcgccgccgg gggcgtttgc
       61 ctggcggcgt ccttactgta tgagcgaggc catgatgcag attccgcaat ataagcgcgt
      121 gcttctgaag atttccggcg aggccctgat gggcaagcgg gattacgggt tggacacgga
      181 caccgtgaat gccattgccg ccgacgtgcg ggatgtcatt gccatgggca tcgaggtttg
      241 cctggtgatt ggcggcggca atattttccg cggcgtagcc ggcgccagtg ctggcatgga
      301 ccgggcccag gccgattaca tgggcatgct ggcgacggtg atgaatgcgc tggccatgca
      361 gtcggctttg gagaagctgg atgtgccgac gcgggtgcag acggcgattc cgatgtcgtc
      421 cgtgtgcgag ccttacattc gccgccgcgc catgcggcat atggagaagg ggcgggtggt
      481 gattttcgcc gctggcacgg gcaacccgtt ctttaccacg gatacggcgg cggcgctgcg
      541 tgccgccgag atgaactgca acgccatgct caagggcacg caggtggatg gcgtctattc
      601 ggccgacccg cgcaaggatg cgacggccaa gcgctatgag gagctgacct atctggacgt
      661 gctggcgcgt gatttgaatg tgatggacgc gtccgccatt tcgctgagcc gtgagaataa
      721 actgccgatt attgttttca acatccatgc ccctggcgcc ttcgcggccg tgatgcgcgg
      781 ggaggggctg tttacccgca ttacggaacc gagctgagga tttctggaaa tggctgatct
      841 tgccgagatt aaaaccgacc tgagccgccg catggacggc gccattgagt cgctgaagcg
      901 cgaattttcc ggcctgcgcg ccggccgcgc cagcccggcc ttgctggagc ccgtgaaggt
      961 ggaggcctat ggccagttca tgcccatcaa ccaggtggcg accattgccg tgcccgaggc
     1021 gcgcatgatc acggtgcagg tgtgggaccg gtccatgatc aattccgtgg tcgccgccat
     1081 ccgcgattgc ggcctggggt tgaatccgca gccggatggg cagcttgtgc gtgtgcctct
     1141 gccggtgctc accgaggagc gccgcgttga gctggccaag gcggctggta aatatgccga
     1201 ggcggcgcgt attgccgtgc gcggcgtgcg ccgtgatggc atggagcaaa tcaagggctt
     1261 gcaaaagaag cacgaaatct cggaagatga tgagcgtgac tggtctgacc aggtgcagaa
     1321 gcttaccgac ggctatatca agcgtgtcga tgagagcctg gcagagaagg aaaaggacat
     1381 tcgccaggtc tgatggctga tatttcttcc caccctatac cgcgtcacgt tgccatcatc
     1441 atggatggca acggccgctg ggctgcggcg cgcaagctgc cacgcgtggc cgggcatcgc
     1501 gaaggggcga aatccgtgcg ccgcgtcatc gaggcggcga ttggcgccgg ggtgcattat
     1561 ctgacgttgt ttgcgttttc ctccgagaac tgggcgcgcc cggcggagga ggtggccgac
     1621 ctcaccttcc tgatgaaaca ttatctgcgc tcggagctgg cggagctgca cgagcagggg
     1681 gtgcggctgg tggtgattgg cgagcgcgag cgt
//
LOCUS       DASQCV010000429         1528 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_590855, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000429 DASQCV010000000
VERSION     DASQCV010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_590855"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..941)
                     /locus_tag="VEQ16_06500"
     CDS             complement(<1..941)
                     /locus_tag="VEQ16_06500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008943960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I NDUFA9 subunit family protein"
                     /protein_id="HYP63518.1"
                     /translation="MDAMPSNLDTLVTVFGGSGFVGRYVVRALAKREYRIRVAVRRPE
                     LAGYLQPMGRVGQIHTVQANVRHPASVEAAMRDSHVAINLVGILSPSSPQTFDAIQAL
                     GAGTIAKAAAAAGAQMVHVSAIGASEKSESSYARTKAAGEKAVLAAVPSATIFRPSVV
                     FGHEDQFTNRFAALARMSPVLPLIGGETKLQPVYVGDVATAIADAVDGKAKAGATYEL
                     GGPEVLTMREIIETILAITERERMLVPLPFGLARFKAAFLQFAPGALKLTPDQVTLLE
                     HDNIVSDTAKAAGLTLEGLGITPDSMEAIAPRYLWRFR"
     gene            1152..1238
                     /locus_tag="VEQ16_06505"
     tRNA            1152..1238
                     /locus_tag="VEQ16_06505"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1186..1188,aa:Leu,seq:cag)
BASE COUNT          262 a          487 c          478 g          301 t
ORIGIN      
        1 cggaagcgcc agagatagcg cggggcgatc gcttccatcg aatccggcgt gatgccgagg
       61 ccttccagcg tcagccccgc cgccttcgcc gtatcagaga cgatattgtc gtgctcgagc
      121 agcgtgacct ggtccggcgt cagtttcagc gcgcccggcg cgaattgcag gaaggcggcc
      181 ttgaagcgcg ccagcccaaa cggcagcggc accagcatgc gctcgcgctc ggtgatggcg
      241 agaatggtct cgatgatctc gcgcatggtc aggacttccg gcccgccgag ctcgtaggtc
      301 gcgcccgcct tggccttgcc gtcgacggcg tccgcaatcg cggtggcgac atcgccgaca
      361 tagaccggct gcagcttcgt ctcgccgccg atcagcggca gcaccggcga catccgcgcc
      421 agcgccgcaa agcggttggt gaactggtcc tcgtgcccga acaccaccga ggggcggaaa
      481 atcgttgccg agggcaccgc ggccagcacc gccttctcgc cggccgcctt ggtgcgggca
      541 tagcttgatt ccgacttctc gctggctccg atggccgaga catgcaccat ttgcgccccg
      601 gctgcggctg cggccttggc tatggtgccg gcgccgagcg cctggatcgc gtcgaaggtc
      661 tgcgggctgc tcgggctgag gatgcccacc aggttgatcg ccacatggct gtcgcgcatg
      721 gccgcttcga ccgaggccgg gtggcgcaca ttggcctgca cggtgtggat ctggccgacc
      781 cggcccatcg gctgcagata tccggcgagt tccggccgac gcacggcaac ccggatgcgg
      841 tactctcgct tggccagcgc ccggaccaca tatcgcccca caaagcccga tccgccgaag
      901 accgtaacca gcgtgtccag attcgagggc atggcgtcca tatcctgaga gggcaaattc
      961 gaggggtatt tagcggattc gcgatacgcc atcaggcgat ttctgtacag cctaaagcgc
     1021 ggcgcgcttt agctttttga ctgagcatga tccgttcgga aaaccggctt ccacttttcc
     1081 gggatcaagc tacccagacc gcacaccggc aatttgacaa gcgcgcgacg gccccttagt
     1141 aaccgcgccg ggcccaggtg gcggaattgg tagacgcgct ggcttcaggt gccagtggtg
     1201 taacagccgt gaaggttcga gtcctttcct gggcaccacc taatgttctc cctcgttctc
     1261 caccgttcgt tttgcgctac caagggattg aaataacgtc tcttttcatg cctgccgggt
     1321 gtgggcgttc gttcccgttc gttgacagcc gcgaaaattg ttggcctttt tgttggcctt
     1381 tagaccactt ttgggaaacg aacatgctca ccgatgttgc aattcggaag gctaggccag
     1441 gtgaacggct tgcgaagttg tcagacggtg gtgggctgca actctggatc acgcccaccg
     1501 gcggcaaact ttggtatctc gcttaccg
//
LOCUS       DASQCV010000430         2430 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_425052, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000430 DASQCV010000000
VERSION     DASQCV010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2430
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425052"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..575)
                     /locus_tag="VEQ16_06510"
     CDS             complement(<1..575)
                     /locus_tag="VEQ16_06510"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006116577.1"
                     /note="Catalyzes the first step in hexosamine metabolism,
                     converting fructose-6P into glucosamine-6P using glutamine
                     as a nitrogen source; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HYP63519.1"
                     /translation="MCGIVGVVGVSPAAELLLDGLRRLEYRGYDSAGIATLVNGHIER
                     RRAEGKLRNLAAVLADKPLAGVTGIGHTRWATHGAPTESNAHPHATSRVAVVHNGIIE
                     NHSLLRSELEAAGQVFCSDTDTETVAQLLDLLLAQGLSPVEAARQAFGRLEGAYALAL
                     IFAGHPELIIGAQRGAPLAVGFGGEEMYLGS"
     gene            671..1297
                     /locus_tag="VEQ16_06515"
     CDS             671..1297
                     /locus_tag="VEQ16_06515"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HYP63520.1"
                     /translation="MRAVVFDLDGTLIDAAPDITAVVNRVLAADGLPALAVAEVRGMI
                     GDGAKSLLDRAFAARGATAEPRHLAAFVADYQADPVRETICYSGVEAALVTLQGQGRP
                     LGVCTNKPIGPTRLILEKLGLTPFFASVIGGDSTPYRKPDPRHLAAVLAEMEVTEAIM
                     VGDHHNDMLAAAGLGLEAIFCAWGYGEVKGAYTVNTTLELLDRIAEIG"
     gene            1362..1799
                     /locus_tag="VEQ16_06520"
     CDS             1362..1799
                     /locus_tag="VEQ16_06520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HYP63521.1"
                     /translation="MLKLSRLTDYAVAALVRLSAAEGVETSPGIAAAIGVPEPTVAKV
                     LKLLAGQGLVISTRGARGGYRLGRELASINVTEIIVAIDGPIALTSCVEGSGGVCESQ
                     TLCPIAGRWDPVNEAIRAALENITLADMAKSAVPRALRISEVA"
     gene            1802..>2430
                     /locus_tag="VEQ16_06525"
     CDS             1802..>2430
                     /locus_tag="VEQ16_06525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HYP63522.1"
                     /translation="MSASMQEIAERKYKYGFTTDIAMEEFPRGLSEDIVRLISAKKNE
                     PEWLLEWRLKAYRYWLTVEEPDWSHIKHPPINYQDLYYYAAPAKEAPKSLDEVDPELL
                     KTYEKLGIPLNERAALAGVAVDAVFDSVSVATTFRETLAKAGVIFCPISEAVREHPEL
                     VRKYLGSVVPVRDNYFAALNSAVFSDGSFVYIPKGVRCPMELSTYFRINA"
BASE COUNT          427 a          799 c          762 g          442 t
ORIGIN      
        1 tccgagccaa gatacatttc ttctccgcca aaccccacgg ccaacggcgc gccgcgctgg
       61 gcgccgatga tcagctctgg gtgcccggcg aaaatcagcg ccagcgcata ggcgccttcc
      121 agccggccaa aagcctggcg cgccgcctcc acgggcgaga gcccctgcgc cagcagcaaa
      181 tccagcagtt gcgccacggt ctcggtgtcg gtgtccgagc agaacacctg gcccgccgcc
      241 tccagctcgg agcgcagcag cgaatggttc tcgatgatgc cgttatgcac caccgccacg
      301 cgtgaggtcg cgtgcggatg ggcgttgctc tcggtgggcg cgccatgggt ggcccagcgc
      361 gtatggccga tgccagtcac cccggccaga ggcttgtccg ccagcacggc ggcgagattc
      421 ctgagcttgc cctcggcgcg gcggcgctcg atatggccat tcaccagggt ggcgatgccg
      481 gcggaatcat aaccccgata ttccaggcgc cttaacccat ccagcagcag ctccgccgca
      541 ggagagacgc ccacaacacc gacgatgcca cacatatagc caaccctttg taaacctaat
      601 gccagcggta gcgctggggc cccgtttgtg tcaaagcggc gggcggtcac tttatacgac
      661 ggagtatgtc atgcgcgcgg tggtgttcga cctggacgga accctcatcg atgccgcgcc
      721 ggatatcacc gccgtcgtca accgcgtgct ggcggcggac gggttgcccg ccctcgccgt
      781 ggccgaggtg cggggcatga tcggcgatgg tgccaagagt ctgctggacc gcgctttcgc
      841 cgcccgtggc gccaccgccg agccccggca tctggccgcc ttcgtcgccg attaccaggc
      901 cgacccggtg cgcgagacca tctgctattc cggcgtcgag gctgccttgg tcacgctgca
      961 agggcagggg cggccgcttg gcgtctgcac caacaagccc atcggtccta ctcggctcat
     1021 cctggaaaaa cttggcctca cccccttctt tgcctcggtg atcggtggcg attcaacacc
     1081 ttacagaaaa cccgacccgc gccatctggc cgccgtgctg gcggagatgg aggtgacgga
     1141 ggccatcatg gtcggcgacc accataacga catgctcgct gccgccggtc tcgggctgga
     1201 ggcgattttc tgcgcctggg gctatggcga ggtgaagggg gcctataccg tgaacaccac
     1261 tctggagttg cttgaccgca tagcggaaat aggttgacgc gggcgcccgt ttgccccatc
     1321 tggcaatcag gaccattatc gtccgattaa ccggagcagc catgcttaaa ctctcacgtc
     1381 tgacagatta cgccgtcgcg gcgctggtgc gtctgtccgc ggcggagggg gtggaaacct
     1441 cgcccggcat cgccgctgcc atcggtgtgc ccgagcccac cgtggcgaaa gtgttgaaat
     1501 tgctggcagg gcaggggctt gtcatctcca cccgcggggc tcgtggcggc taccggctgg
     1561 gccgggagct tgccagcatc aatgtcacgg agatcatcgt cgccatagac ggtcccatcg
     1621 cgcttacctc ctgcgtggag ggttcgggcg gcgtctgcga gagccagacc ctgtgcccca
     1681 tcgccgggcg ctgggacccg gtgaacgaag ccatccgcgc cgcgctggaa aacatcacac
     1741 tcgccgatat ggccaaatcg gccgtgccgc gcgccctgcg tatttctgag gttgcctgaa
     1801 tatgtccgca tcgatgcagg aaattgctga gcgtaagtac aagtacggtt tcaccaccga
     1861 catcgctatg gaggaattcc cgcgcggcct gtcggaagac atcgtgcggc tgatttccgc
     1921 caagaagaac gagcccgaat ggctgctgga gtggcggctg aaggcctatc ggtactggct
     1981 gaccgttgaa gagccggact ggtcgcacat caagcacccg ccgatcaatt accaggatct
     2041 ctattactac gccgccccgg ccaaggaggc gccgaaatcg ctcgacgagg tcgatcccga
     2101 gctgttgaag acatatgaga aactcggcat cccgctgaat gagcgcgcgg ccctggccgg
     2161 cgtggcggtg gatgcggtgt tcgactctgt ctccgtggcg acgactttcc gcgagacact
     2221 ggccaaggcg ggcgtcatct tctgccccat ttccgaagcc gtgcgcgagc atcccgagct
     2281 ggtgcggaaa tatctcggct ccgtcgtgcc ggtgcgcgac aattacttcg ccgcgctcaa
     2341 ttccgccgtg ttttccgatg gcagcttcgt ctacatcccc aagggcgtgc gctgcccgat
     2401 ggagttgtcc acctatttcc gcatcaatgc
//
LOCUS       DASQCV010000431         3462 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_425079, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000431 DASQCV010000000
VERSION     DASQCV010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3462
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_425079"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1203)
                     /locus_tag="VEQ16_06530"
     CDS             complement(<1..1203)
                     /locus_tag="VEQ16_06530"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP63523.1"
                     /translation="MRAWRRLLAVALLLGAAPAAFAETQDCGSIVIPPGLGIGPGADV
                     TSLNPLLTSSLYNQEAAGLIFTPLLWINRFHQIDYERSIASAVTTPDNGKTYDVTLRP
                     WKWSDGTAVTSADVLYAYQLIKALGQSYAAYGQGGIPDIIASISAPDAAHVHVALTRP
                     VNPQWFILNGLSQLTPLPQHVWAHYSTNEIWQAQSDPAFFHVGDGPLLPQALNIGIDA
                     VFVPNPLYGGTKMHFSRFVMRFESAEGQELQAVQAGDLDMSNIPFDLYGKALQLPGDY
                     VVTLPPSYSWHELIPNMANKATGFFADVRVRQALADAIDQKRIIALAMHGLGIPVYNP
                     VPPYPDTFLSPTARAGQYPVGYDVAKAKTLLAAAGFLPGADGILQKDGQRLAFTLLIP
                     AGQPLRIEI"
     gene            complement(1209..2414)
                     /locus_tag="VEQ16_06535"
     CDS             complement(1209..2414)
                     /locus_tag="VEQ16_06535"
                     /inference="COORDINATES: protein motif:HMM:NF018875.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis HemY N-terminal
                     domain-containing protein"
                     /protein_id="HYP63524.1"
                     /translation="MLTAAKFLVLAAIFLALAWWVGGLPGDVTAHVGTYTITTSTPAA
                     LLLLFLIALIFTMLVRVIGGIGGAPGKVAAWRGKKRTAAGERATQRGLVALAAGDAVA
                     AKAEAQRAHKLLGDTPLSLMLRAEAARLAGDLAGAKTAFAQLTKHKEMRFLGHRGLLR
                     ASMEEADHNAASRHALDAEDAYPGAAWTRAQRLELALKGTDYIAALKLTQDKNEVAAL
                     AVAASTQAPASRDALHYAQMALKAVPGFAPAVASAASALRRLGKIRAARKMISSAWQL
                     KPHPMLGAEWFAGGATPIERAQDATLLAAANPGHVESELVLAQTALDAGLVAEARRHA
                     ELALHAGPDDGRAQGILDTLEGKPRTAPRCGWVCAACHHTSQDWSALCPSCGKLGKLR
                     WRTPGTSLV"
     gene            complement(2414..3301)
                     /locus_tag="VEQ16_06540"
     CDS             complement(2414..3301)
                     /locus_tag="VEQ16_06540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63525.1"
                     /translation="MSETESTSTAAPEPKPAPLPAPAPIAPAPARRHAIWPYVFVLGF
                     LVLAGGEVYLWYQGQAHRADSTDLAVLKAQLDDLRTTQANAAPAQNPAQNSVTVQADL
                     AQKYADLAAQLNAVQAQAASDHGALSTLQANAQDLTQLTQRMDLLNALGMARLALDAG
                     QPLGQIPGAPPALAQFATTAPPLEARLRESFALAARAAEAASLGDNGQSSFWDKVKAR
                     LEGLITISNGTYVIFVPPAAAALIQAQQALDNGDLAGAVAALQNLGPGAKDAMADWLA
                     QAEALLAARSALLKLAQGA"
BASE COUNT          578 a         1189 c         1117 g          578 t
ORIGIN      
        1 aatctcaatg cgcaaaggct gcccggcggg aatcagcagc gtgaaggcga gacgctgccc
       61 atccttttgc aaaatcccgt ccgcgccagg caaaaacccc gccgcggcca gtaatgtttt
      121 cgccttcgcc acatcatatc ccaccggata ttgccccgcc cgcgccgttg gcgagaggaa
      181 tgtgtcagga taaggcggca ccgggttata gaccggtatc cccagcccat gcatggcgag
      241 cgcgatgatc cgcttctggt cgatggcatc cgccagcgcc tggcgcaccc gcacatcggc
      301 gaaaaaaccc gtcgccttgt tggccatatt gggaatcagc tcgtgccagc tatagctcgg
      361 cggcaatgta accacataat cgccgggcag ctgcagcgcc ttgccgtaaa ggtcgaacgg
      421 gatgttgctc atatcgagat cgcccgcctg caccgcctgc aattcctgcc cctccgcgga
      481 ttcaaaccgc atgacgaaac gcgagaaatg catttttgtc ccgccataaa gcgggttggg
      541 cacgaagacg gcgtcgatgc cgatattcag cgcctgcggc agaagcgggc cgtctcccac
      601 atggaaaaag gcggggtcgc tctgcgcctg ccagatttca ttggtggaat aatgcgccca
      661 gacatgctgc ggcaatggcg tgagctggga gagcccattc aggatgaacc attgcggatt
      721 caccgggcgt gtcagcgcca catgcacatg cgccgcatcg ggcgcggaaa tgctggcgat
      781 gatgtccggt atgccgccct gcccataggc ggcataggac tgccccagcg ccttgatgag
      841 ctgataggca tagagcacat ccgccgatgt caccgctgtc ccgtcagacc atttccacgg
      901 ccgcagcgtc acgtcgtagg tcttgccatt atccggtgtc gtcacggcgc tggcgatgct
      961 gcgttcgtaa tcgatttggt gaaaccggtt gatccagagc agcggcgtga aaatcagccc
     1021 cgccgcttcc tggttataga gcgagctggt gagcagcggg ttgagcgagg tgacatccgc
     1081 ccccggcccg atgccgagcc ccggcggaat gacgatgctg ccgcaatcct gcgtctccgc
     1141 gaaggccgcc ggcgcggcgc cgagcagcaa agccacagcg aggaggcggc gccaggcgcg
     1201 caagcgcgct acaccaggga cgtgccgggc gtgcgccagc gcaacttgcc cagcttgccg
     1261 caggaggggc acagagccga ccaatcctgg ctggtatggt ggcaggcggc acagacccag
     1321 ccgcagcgtg gtgccgtgcg gggcttgccc tccagcgtgt cgagaatccc ctgcgcgcgg
     1381 ccgtcatcgg gtccggcatg caaggcgagc tcggcatggc gcctggcttc cgccaccagc
     1441 ccggcatcca aagcggtctg cgccagcacc agctcggatt ccacatggcc gggattggcg
     1501 gcggccagaa gggtcgcgtc ctgcgcgcgc tcgatcggcg tggcgccccc ggcgaaccat
     1561 tctgcgccca gcatcgggtg cggcttcagc tgccaggccg aggatatcat tttacgcgcg
     1621 gcgcgaatct tgcccagccg ccttagcgcc gaagcggctg aggctacggc cggggcaaaa
     1681 cccggcacgg ctttcagcgc catctgcgcg taatgcagcg catcgcgcga ggccggcgcc
     1741 tgcgtgctgg ctgccacggc gagcgccgcc acctcgttct tgtcctgcgt cagtttcagc
     1801 gcggcgatat aatccgtgcc cttcagcgcc agttccagcc gctgcgcgcg cgtccaggcg
     1861 gcgccgggat aggcatcctc ggcatccagc gcatggcggc ttgcggcgtt gtggtcggct
     1921 tcctccatgc tggcgcgcag caggccgcga tggccgagaa agcgcatctc cttatgtttc
     1981 gtcagctggg cgaaggcggt tttggcgccg gccagatcgc ccgccagccg cgccgcctcg
     2041 gcgcgcagca tcaaggagag cggcgtgtcg cccagcagct tatgggcccg ctgcgcctcg
     2101 gctttcgccg ccaccgcgtc gcccgccgcc agcgccacca gcccgcgctg cgtcgcgcgc
     2161 tcgcccgccg ctgtccgttt tttgccccgc caggccgcca ctttccccgg cgcgccgccg
     2221 atgccgccga tcacacgcac cagcatggtg aaaatcaggg cgatgaggaa cagcagcagc
     2281 aaggccgctg gggtggaggt ggtgatggtg taggtcccga catgcgccgt cacatcgccg
     2341 ggcaggccgc ctacccacca ggccagcgcc aggaatatgg cggccaggac cagaaatttt
     2401 gccgccgtca gcatcaggcc ccctgggcca gtttgagcag cgccgaccgc gccgccagca
     2461 gcgcctcggc ctgggccagc caatccgcca tggcgtcttt cgcccccggc cccaaattct
     2521 gcagcgctgc caccgccccg gccagatcgc cattatccag cgcttgttgc gcctggatca
     2581 gcgctgcggc cgccggaggc acgaaaataa catacgtgcc gttgctgatg gtgatcagcc
     2641 cttccagccg ggctttgacc ttgtcccaga agctgctttg cccgttatcg ccaaggcttg
     2701 ccgcctcagc tgcccgcgcg gccagcgcga aactctcacg cagccgcgcc tctagcggcg
     2761 gcgccgtggt ggcgaattgc gccaaggctg gcggcgcgcc tgggatctgc cccagaggct
     2821 gcccggcatc caaggcgagc cgcgccatgc ccagcgcgtt gagcaaatcc atgcgctggg
     2881 tcagctgggt caaatcctgc gcgttggcct gcaatgtgga gagcgcgcca tggtcgctcg
     2941 ccgcctgcgc ctgcaccgcg ttcagctgcg ccgcgaggtc cgcatatttc tgcgcgagat
     3001 ccgcctgcac ggtcacgctg ttctgcgcgg ggttctgcgc gggcgccgca ttggcctggg
     3061 tggtgcgcag atcatcaagc tgcgccttca gcacggccag gtcggtagag tcggcccggt
     3121 gtgcctggcc ctgataccat aaataaactt cgccccccgc caggaccaaa aacccgagca
     3181 cgaacacata gggccagatg gcgtggcggc gcgccggcgc cggggcaatg ggcgctggtg
     3241 ccggcagggg ggctggcttc ggctcgggtg cggccgtgga tgtgctctcc gtttcgctca
     3301 tgccagcaac gccatcaaat ccgcctccgt cggggccagt gcggcatgaa tttcccgcca
     3361 gggcaagccc gttaagcctt tcgcgacatt ttcactcagc acgaaagcgt ccatttccgc
     3421 cgtgccgggc gggtgcaggg tggcgaaggc ccgcgccgtc tc
//
LOCUS       DASQCV010000432         4835 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_756396, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000432 DASQCV010000000
VERSION     DASQCV010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4835
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_756396"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..391)
                     /locus_tag="VEQ16_06545"
     CDS             complement(<1..391)
                     /locus_tag="VEQ16_06545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63526.1"
                     /translation="MKQRHLLAGLAGIAVLAVLYLLTRPAAPTDNTPAPSATVSAIQL
                     TLQTVPVHVSAPGSVMAGTAESGITLAAPGIVTSFAVRPGQDVTAGQILAHVAPDPQS
                     AADLRKAEDAATAASAARDHVAALLPQH"
     gene            complement(388..1764)
                     /locus_tag="VEQ16_06550"
     CDS             complement(388..1764)
                     /locus_tag="VEQ16_06550"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HYP63527.1"
                     /translation="MTFPGQAGPGNAASMRFALPALLLAALAGCATYRAAPLPASASL
                     QPSLAALPHSLPDGRVVDVSSPLAVQDVAALAVLNNPDLKAARAQHGVAEAELLVAGL
                     PPDPSFTGGFAALLGGPASMSAISASLTQDIGALITYRADKQAARAGLAQVDAGILWQ
                     EWQVASQAEQLVVTLQADRATLASLQADVAVLSGIDQATQGQIARNNLTLNEGTTSMA
                     ALAAVQSTLDTATQTALHDEDQLDALLGLLPGTAIALAPAQVAPPPDDLAPALASLPQ
                     RRPDLIALRYGYAQEDAKLRAAILTQFLPLSLGASGGRDTSGVTSAGPQITLTLPLFN
                     RNRAAIKTAEATRAALGAQYQAALASATGGAQSLSANLALLRAQAAQAQAQADTAAQM
                     AASAQTAFSAGQISAPALATIQATAGERERAAIALNAQVQTAEISLATLLGLGLPPLG
                     AASGDQTE"
     gene            1829..2503
                     /locus_tag="VEQ16_06555"
     CDS             1829..2503
                     /locus_tag="VEQ16_06555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYP63528.1"
                     /translation="MKLLLIEDDEKAAAHLREGLAPEGHVVERVADGRAGLLAAASGG
                     FDVLIIDRMLPGLDGLTLLQTLRGAGVQTPALFLTALGGLDDRLQGLRAGGDDYLVKP
                     FAMAELAARIAALGRRNPAPPQPLTLRIADLELDRATRTVRRQGKKIHLKPREYEVLE
                     YLLCRRGQVVTRTMLLEDVWGFHFVPKTTIVDAHISRLRAKIDQDFTPPLLHTYRGAG
                     YKIDVA"
     gene            2493..3869
                     /locus_tag="VEQ16_06560"
     CDS             2493..3869
                     /locus_tag="VEQ16_06560"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HYP63529.1"
                     /translation="MWLETPLRLLFQTSGFRLALRSLGLSLGGAMLVFFIIHHAEEFA
                     WRGQIDDAVSGGRNDILSDLQHNKLPVADNVGLTLAEGGGLFYADIGTDGTWRAGNFR
                     LTPALAARWNSMQTWRRQDGLSVPAHVRALRGVPQHFADGETLFIAADATALLRLNEL
                     IAQSFLAVFGIILALGLANGYFSARATLARVDKFGATIRDIMSGDLSRRIEMSAEGDE
                     FDRLATSMNAMLQRIQELMENLRQVTNDIAHDLRSPLARLREHLELSRTRFNAPGLPE
                     MFDEALAQLDQALEIFAAMLRIAEVEAGARRAGFAEVNVSALLVMLEESYEPSLCATG
                     IALHTEIAPDLTLRGDRELLMQLFANLLDNIALHAEGAANASITAAARDGRIIVTVAD
                     DGSGIPAAQTGRMIQRFARLDSSRHRPGHGLGLALAVSIATLHEGSLALEAAEPGLRV
                     IVSLPAPG"
     gene            complement(3871..4587)
                     /locus_tag="VEQ16_06565"
     CDS             complement(3871..4587)
                     /locus_tag="VEQ16_06565"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HYP63530.1"
                     /translation="MKTAETWLGQPSDGKNFALALAAGLGLELAALALLLPFVTKQAP
                     PAQVQAPVKLTIAAAPPAPKPPPPTPKPPQPVPKPPPPVTPPPRPTPVSHPRPVPRPI
                     VHHLPPPVLTPHPVVQPPPPVQAAPPPPPAPAPPSAGEQDLFREALRRAVQLVANQVY
                     PPSGQASGEVEIAIIYLNGHATSVTLARSSGFPVLDAAAVRAGQIANYPPPPEAFANR
                     VYSCTLIVTFQPAPPTTDGD"
     gene            complement(4598..>4835)
                     /locus_tag="VEQ16_06570"
     CDS             complement(4598..>4835)
                     /locus_tag="VEQ16_06570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HYP63531.1"
                     /translation="PKITVNVLADGSIQVKGQVLTSDQLTAMLAADGAPDKTELTIAA
                     DKSTAFQHFMSVIDAARKAGVTDIGIAAQPVPAS"
BASE COUNT          771 a         1533 c         1709 g          822 t
ORIGIN      
        1 ggtgctgtgg cagcaaggcg gcgacatgat cgcgcgccgc actggcagcg gtagcggcat
       61 cctcggcctt acgcagatcg gcggcggatt gcgggtccgg cgccacatgc gcgagtattt
      121 gcccagccgt aacgtcctgg cccggccgca cggcaaagct cgtcacgatg ccgggcgccg
      181 ccagcgtaat gccgctctcc gccgtgccag ccataacgct gcccggggcg gagacatgca
      241 ccggcacggt ttgcagcgtg agctggatgg cgctcaccgt ggcgctgggg gcgggcgtgt
      301 tatccgtggg cgcggcggga cgggtgagca gatagagcac ggcaagaacc gcaattccgg
      361 ccagcccggc gagcagatgg cgctgtttca ttctgtctgg tctcctgagg cggccccaag
      421 cggcggcagg ccaaggccga gcagggtggc gagcgagatt tcggctgtct ggacctgggc
      481 attgagcgcg atggcggcac gctcacgctc gccggcggtg gcctggatag tggccaaagc
      541 gggcgcgctg atctgcccgg cggagaaggc ggtttgcgcg ctggccgcca tctgtgccgc
      601 cgtatcagcc tgggcctgcg cctgtgccgc ctgggcgcgc agcagggcaa gattagccga
      661 gagcgattgc gccccgccgg tggccgaggc caaagccgcc tggtattgcg cccccagcgc
      721 cgcgcgcgtg gcttcggcgg tcttgatggc ggcgcggttg cggttgaaaa gcggcaaagt
      781 gagggtgatt tgcggcccgg cgctggttac gcccgaggta tcgcgcccgc ccgaagcgcc
      841 caggctgagc ggcaggaatt gcgtgaggat ggcggcacgc aatttcgcgt cttcctgggc
      901 atagccatag cgcaaggcga tgaggtccgg acggcgctgc ggtaaactcg ccaaggcggg
      961 cgccagatca tccggtggcg gggccacctg cgcaggggcg agagcgatgg cggtgccggg
     1021 taacagaccc agcagcgcat cgagctggtc ctcgtcatgc aacgcggttt gcgttgccgt
     1081 gtccaacgtg gattgcaccg ctgccagcgc cgccatgctg gtggtgcctt cattgagggt
     1141 gagattattg cgcgcaatct ggccctgcgt ggcctggtcg atgccggaca gcaccgccac
     1201 atccgcctgc aggctggcca aggtggcgcg gtcggcctgc agcgtcacca cgagctgttc
     1261 cgcctgcgag gccacctgcc attcctgcca gagtatgccg gcatccactt gggcaagccc
     1321 ggcccgggcg gcctgcttat ccgcccggta ggtgatgagc gcgccgatat cctgggtgag
     1381 actggccgaa atggcggaca tggaggcagg cccgcccaga agtgctgcaa aaccgccggt
     1441 gaaggacggg tccggcggca gccccgccac cagcagctcg gcctcggcca cgccatgctg
     1501 cgcccgcgcc gccttcaggt ccgggttgtt gagcacggcc agcgccgcga cgtcctgcac
     1561 cgccaggggg gaggacacat caaccacccg cccatcgggc aagctatgcg gcagcgcggc
     1621 caggctgggc tgcaaggacg cagaagccgg cagaggggcg gcccggtagg tcgcgcaacc
     1681 ggccagggcg gccagaagca aagcaggcag ggcaaaacgc atggatgcgg cattgcccgg
     1741 tccggcttgc ccagggaatg tcatgaatct tgtcaaaatt taatcttatc ctgtgttgcg
     1801 gcgccgtgtt tctgctaacc ctaagaccat gaaactcctg ctgatagagg atgacgaaaa
     1861 agccgccgcg catctgcgcg aggggctggc gccggaaggc catgtggtgg aacgggtcgc
     1921 cgatggccgc gccgggctgc tggcggcggc ttctggcggg ttcgatgtgc tgatcatcga
     1981 ccgcatgctg ccagggctgg acgggctgac cctgctgcag acgctgcgcg gcgccggggt
     2041 gcagacgccc gctttgtttc tcaccgcttt gggcgggctg gatgaccgtt tgcaggggct
     2101 gcgcgcgggt ggcgatgatt atctggtaaa acccttcgcc atggccgagc ttgccgcgcg
     2161 cattgccgcc cttggccgcc gcaaccccgc cccgccccag cctctcacac tgcgcatcgc
     2221 cgatttggag ctcgaccggg ccacacgcac cgtgcggcgc cagggcaaaa agattcatct
     2281 gaagccgcgc gaatatgaag tgctggaata tttgctgtgc cggcgcggcc aggtggtgac
     2341 caggacgatg ctgctcgagg acgtgtgggg ttttcatttc gtaccgaaga ccaccatcgt
     2401 cgatgctcat atcagccgcc tgcgcgccaa gatcgaccag gattttacgc cgcctttgct
     2461 ccacacctac cgcggcgccg gatacaagat tgatgtggct tgagacgcct ctgcggctcc
     2521 tgttccagac ctccggcttc cgcttggcac tgcgcagcct gggtctgtcg ctgggcggcg
     2581 cgatgctggt gtttttcatc atccatcatg ccgaggagtt cgcctggcgc gggcagattg
     2641 atgacgccgt ttcaggcggg cgtaacgata tcctctccga cctgcagcat aacaagctgc
     2701 ctgttgccga taatgtgggg ctgaccttgg ccgagggcgg cgggctgttc tacgccgata
     2761 tcggcacgga cggcacatgg cgcgccggca atttccgcct caccccggcg ctcgccgcgc
     2821 gctggaacag catgcagaca tggcgacgcc aggacgggct cagcgtgccg gcgcatgtgc
     2881 gcgcgctgcg tggcgtgccg cagcatttcg ccgatggcga aaccttgttc atcgccgccg
     2941 acgccaccgc cttgttgcgg ctgaacgagc tgatcgcgca gtcctttctc gccgtattcg
     3001 gcatcatcct cgcgctcggg ctggcgaacg gctatttttc cgcgcgcgcc acattggcac
     3061 gtgtggataa attcggcgcc accatccgcg acatcatgag cggcgatctg tcgcgccgga
     3121 tcgagatgtc cgccgagggc gacgaattcg accggctcgc caccagcatg aatgccatgc
     3181 tgcaacggat ccaggagctg atggaaaatc tgcggcaggt gaccaacgac atcgcgcatg
     3241 atctgcgctc gcctctggcg cggctgcggg agcatctgga actttcacgc acgcgcttca
     3301 acgcgccagg cctgccggaa atgttcgacg aggcgctggc gcaactcgac caggcgctgg
     3361 agattttcgc cgccatgctg cgcatcgccg aagtggaagc gggcgcgcgc cgcgccgggt
     3421 ttgccgaggt gaatgtctcg gcgcttttgg tcatgctgga agagagctat gagccgtctc
     3481 tgtgcgccac gggaattgca ctgcatacag agattgcacc agatctcacg ctgcgcggcg
     3541 accgcgaatt gctgatgcag cttttcgcaa atctgctcga caatattgcg ctacatgcgg
     3601 agggcgccgc caatgcttcc attacggctg cggcgcggga cgggcgcatc atcgtcacgg
     3661 ttgcggacga tggcagcggg attcccgccg cgcaaactgg gcgcatgatc cagcgtttcg
     3721 cccggctgga ctcctcccgc caccgccccg gccatgggct gggcctggcg ctggcggtat
     3781 ccatcgccac gctgcatgag ggcagcctgg cgctggaggc ggcggaaccg ggcttgcgcg
     3841 tgatcgtcag cctgcccgcg ccgggctgac ctagtcgccg tccgtggttg gcggcgcggg
     3901 ttggaaagtc acgatgagcg tacaggagta aacgcgatta gcgaaagcct ccggcggcgg
     3961 cgggtaatta gcgatttgcc cagcgcgcac ggctgccgca tccagcaccg ggaagccgct
     4021 gctacgtgcc agcgtgacgc tggtggcgtg gccattaaga tagatgatgg cgatctccac
     4081 ctcgccgctg gcctgcccgg atggcggata gacctggttg gccacgagct gtacggcacg
     4141 gcgcaaagcc tcgcgaaaca aatcctgctc gcctgccgaa ggtggcgcgg gcgcgggtgg
     4201 tggtggcggt gcggcttgca cgggcggcgg gggctgcacc accgggtgcg gcgtgagcac
     4261 gggcggcggc aggtgatgca caatggggcg cggcaccggg cgcggatggg acaccggcgt
     4321 cggacgcggc ggcggtgtca ccggcggggg cggtttcggc acgggctgcg gcggcttggg
     4381 cgtgggtggt ggtggtttcg gcgccggcgg ggcggcggcg atggtcagtt tcaccggcgc
     4441 ctgcacctgc gcgggcgggg cctgcttcgt cacgaagggt agaagcagcg ccagcgccgc
     4501 cagctccagc cccagcccgg ccgccagcgc cagggcaaaa ttcttgccat cagagggctg
     4561 gccgagccat gtctcggcgg tcttcatcac gcgcgcctca cgaggccggc acgggctgcg
     4621 cggcgatgcc gatatcggtg acgccggctt tgcgcgccgc atcgatcacg ctcatgaaat
     4681 gctgaaaggc cgtgctcttg tcggcggcga tggtcagctc ggtcttgtcc ggcgcgccat
     4741 cggcagcgag catggcagtg agctggtccg aagtgaggac ctggcccttc acctggatcg
     4801 agccatcggc cagcacattc accgtgattt tcgga
//
LOCUS       DASQCV010000433         2176 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1587915, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000433 DASQCV010000000
VERSION     DASQCV010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1587915"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..940
                     /gene="pstB"
                     /locus_tag="VEQ16_06575"
     CDS             134..940
                     /gene="pstB"
                     /locus_tag="VEQ16_06575"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HYP63532.1"
                     /translation="MSTQAAFPAPFAQSAAGPVPRVSIRNLNFYYGTTHALKNVSIDF
                     PDRQTTAMIGPSGCGKSTLLRILNRMYDLYPGQRAEGEVMIGGQNIIDPGMNLNLLRR
                     RVGMVFQKPTPFPKSIYENVIFGVRLHEKLSKAELDERVEWALTRSALWGEVKDRLHS
                     SALGLSGGQQQRLCIARSIAVRPEVLLLDEPTSALDPISTLKIEELVDELKQDFTIVI
                     VTHNMQQAGRCADQVAFFYLGELVEAGPSSQIFTAPRERKTQEYITGRFG"
     gene            952..1671
                     /gene="phoU"
                     /locus_tag="VEQ16_06580"
     CDS             952..1671
                     /gene="phoU"
                     /locus_tag="VEQ16_06580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HYP63533.1"
                     /translation="MPSEPKHIVTSFEADLKKLHDMIATMGGLVERAVADATTALLTR
                     NPDLATRVIEADPAINTEQHNVEQFAVRLLALRQPVADDLRHVIQALKVVTDLERIGD
                     YAANIAKRSIVVNQVASGFALSGLGQMALLVQQNLKSCIDTVGELSADKAIAVWRADQ
                     MVDDLYNTIFRELITYMMEDARNITACTHLLFIAKNLERIGDHTTNIAELTYYAITGE
                     NLPDFRPKSDNTSTYVHNVDA"
     gene            1674..>2176
                     /locus_tag="VEQ16_06585"
     CDS             1674..>2176
                     /locus_tag="VEQ16_06585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYP63534.1"
                     /translation="MSDTNKPYILIVEDEAPLVTLLRYNLEKQGFRVEDAGDGGEALT
                     RITEAPPDLLLLDWMLPTMSGIELCRQLRRRPATRALPIIMLTARAEDQDAIRGLDTG
                     ADDYITKPFSTEALIARIRALLRRSGSVPQKLKLNFHDISLDPASHRVLRNGRALHLG
                     PTEFRLL"
BASE COUNT          438 a          793 c          571 g          374 t
ORIGIN      
        1 tcgtcacaaa tgtcatcgac taccctgtaa aatcctaata agctgatcct gtcatccaag
       61 cttcaccata gtgtcatcgt actgtcacgg acgccgctta aggaaggcgc ccatggaaat
      121 agcgagtcag agaatgtcca cccaagccgc cttccccgcg cccttcgccc agtcggcggc
      181 cggccccgtg ccacgcgtct ccatccgtaa cctgaatttc tattacggca cgacgcatgc
      241 gctgaagaac gtctccatcg actttccgga ccgccagacc acggccatga tcggcccctc
      301 cggctgcggc aaatccaccc tgctgcgcat cctcaaccgc atgtacgacc tctatcccgg
      361 ccagcgcgcc gagggcgagg tgatgatcgg cggccagaac atcatcgacc cgggcatgaa
      421 cctcaacctg ctgcgccgcc gcgtcggcat ggtgttccag aagcccacgc catttcccaa
      481 atccatttac gagaacgtca ttttcggcgt ccgcctgcat gagaagctga gcaaggctga
      541 gctcgatgag cgcgtcgaat gggccctcac ccgctccgcc ctctggggtg aggtgaaaga
      601 ccgcctgcac agctccgccc tcggcctttc cggcggtcag cagcagcgcc tctgcatcgc
      661 ccgctccatc gccgtgcgcc ctgaagtgct gctgctcgac gagcccacct ccgcgctcga
      721 cccgatctcc acgctgaaga tcgaagagct ggtggacgag ctgaaacagg acttcaccat
      781 cgtcatcgtc acgcacaaca tgcaacaggc cggccgctgc gccgaccagg tggccttctt
      841 ctatctcggc gagctggtgg aagccggtcc gtccagccag attttcaccg cgcctcgcga
      901 acgcaagacg caagaatata tcaccggccg gttcggctaa cggagtctcc aatgcccagc
      961 gaaccgaaac acatcgtcac cagcttcgaa gcggatctga agaagctgca cgacatgatc
     1021 gccacgatgg gcgggctggt ggagcgcgcc gtggccgatg ccaccaccgc cctgctcacc
     1081 cgcaatcccg acctcgccac ccgcgtcatc gaggccgatc ccgcgatcaa taccgagcag
     1141 cataatgtgg aacaattcgc cgtgcgcctg ctggccctgc gccagccggt ggcggacgat
     1201 ctgcgtcatg tcatccaggc gctgaaggtc gtcaccgacc ttgagcgcat cggcgattat
     1261 gccgccaaca tcgccaagcg ctccatcgtg gtcaaccagg tggcaagcgg cttcgcgctc
     1321 tccggcctcg ggcaaatggc cttgctggtg cagcagaatc tgaaatcctg catcgacacg
     1381 gtgggcgaat taagcgccga caaggccatc gcggtgtggc gcgccgacca gatggtggat
     1441 gacctctaca acaccatctt ccgtgagctc atcacctaca tgatggaaga cgcgcgcaac
     1501 atcaccgcct gcacgcatct cctcttcatc gccaagaatc tggagcgcat cggcgaccac
     1561 accaccaaca tcgccgaact cacctactac gccatcaccg gcgaaaacct gccggatttc
     1621 cgtcccaaaa gcgacaacac ctccacctat gtccataatg tagatgcgtg atcatgtcgg
     1681 acacgaacaa gccgtacatc ctgattgttg aggacgaggc cccgctcgtc accctgctgc
     1741 gctataatct tgagaagcaa ggcttccgcg tcgaggacgc tggtgatggc ggcgaggccc
     1801 tcacccgcat caccgaggcc ccgcccgacc tgctgctgct ggactggatg ctgcccacca
     1861 tgtcgggcat cgagctctgc cgccagctgc gccgccgccc ggccacacgc gctttgccca
     1921 tcatcatgct caccgcccgc gccgaagacc aggacgccat ccgcggcctc gataccggcg
     1981 cggacgacta catcaccaag cccttctcca ccgaagcgct catcgcccgc atccgcgcgc
     2041 tgctgcgccg ctccggctcg gtgccccaaa aactcaagct gaatttccac gacatctcgc
     2101 tggaccccgc ctcgcaccgc gtgctgcgca acggccgcgc tctgcatctc ggccccaccg
     2161 agttccgcct gctgga
//
LOCUS       DASQCV010000434         2030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1918307, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000434 DASQCV010000000
VERSION     DASQCV010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1918307"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..215)
                     /locus_tag="VEQ16_06590"
     CDS             complement(<1..215)
                     /locus_tag="VEQ16_06590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63535.1"
                     /translation="MGASIPKSGFASPKLILVSLISVEMLPRVNGNIAAAFHGRSRLT
                     GASPLRPPRDQNPDSLLRETPDCGLAHL"
     gene            392..>2030
                     /locus_tag="VEQ16_06595"
     CDS             392..>2030
                     /locus_tag="VEQ16_06595"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYP63536.1"
                     /translation="MVRNEPRKWDMEADLVAVGAGAGGLAAAITARDHGLSAFVLERS
                     DEVGGVTAYSMGEVWIPGNHLAAALGIGDSPESGFRYVKSLSMGYGDDRAILNQAIHG
                     PVALKYFESAIGLKMQVIRNFPDYYFPHNNDSVAEGRYLEVEPFPADTLGEWQHRTRL
                     TPHLPAGLTHEDIFHGGGLANMLGWDYELLADRITKDLRCLGPGLAAYFVKGALDRNI
                     PLYTDTSVEELIGDGTRIIGVRAIRGGEELFIKAHRGVVLAVSGYERNHDFAKTLSNL
                     LDPVSMVMGTVDGAHFRLAGPFGARIARVPDPANLGLHMPGEEHDHGAPLWRGSLPFL
                     GLPHTIVVNRAGKRFANEAFYRAVYYAVDFIDGATQTHPNYPCWVVFDSQARRKYPFG
                     TAMPGQDLPEGMGVKADSLDELADRMGADPEGLRQTIARFNAHAEAGQDPDFQRGSFP
                     WAAAMAGDLGHKPNPNLGPLLEAPFYAVELKRMGGGGIGGTGLLADHHCQVLGWDGKP
                     IAGLYAAGNSMARLDTGAMMQSGLSNARGMTHGYLAGR"
BASE COUNT          371 a          591 c          680 g          388 t
ORIGIN      
        1 aggtgagcaa ggccgcaatc aggcgtttcg cggagcaggc tgtccgggtt ctggtcacgg
       61 ggcggacgga gtggtgacgc gccggtaagg cggctgcggc catgaaaagc ggccgcgata
      121 tttccattga ctcgcgggag catttccact gaaataagac taacaagtat caattttggg
      181 ctggcaaagc ccgatttggg gatggacgca cccatggacc tccgggccgt gcgtgctgat
      241 ggctgtaaga tgattgagtg tacaatttcg taggaggacg cggctcgggg tcgaagatag
      301 gcggcaagca ctttgactgg gccagagatt gtatcctccg gcgtctcacg cggcggcgtg
      361 gcgctgaagg tcggttgggg agagaaacga aatggtccga aacgagccca gaaaatggga
      421 catggaggcc gatctcgtgg ccgtcggcgc gggcgctggc ggcctcgctg ccgccatcac
      481 ggcacgggat cacgggttgt ccgcgtttgt gttggagcgt tcggacgaag tcggtggcgt
      541 caccgcctat tcgatgggcg aagtctggat ccctggcaat catctcgcgg cggcgctggg
      601 gattggtgat tcgcctgaga gcgggttccg ttacgtaaaa tcattgtcaa tgggctatgg
      661 cgatgaccgc gccattctca accaggcgat tcacggcccg gtggcgctca aatatttcga
      721 gtccgccatc ggcctgaaga tgcaggtgat ccgcaatttc ccggattatt attttcctca
      781 taataacgac agcgttgccg agggacgcta tctcgaggtt gagccatttc cggcggacac
      841 gctgggcgaa tggcagcaca ggacgcgcct cacaccgcat cttcctgccg gtttgacgca
      901 tgaggatatt ttccatggcg gcggcctcgc caatatgctg ggctgggatt acgagttgct
      961 cgccgaccgc atcacgaagg acctgcgctg cctcgggccg gggctggcgg cttatttcgt
     1021 gaaaggagcg ctcgaccgca acattccact ctacaccgat acgagtgtgg aggagttgat
     1081 cggcgacggc acgcggatca tcggcgtgcg tgccatccgc ggtggcgaag aactgttcat
     1141 caaggcacat cgcggcgtcg tgctcgccgt cagtggttat gagcgcaacc atgatttcgc
     1201 caagacgctg agcaatctgc tcgaccctgt ctcgatggtg atgggcaccg tggatggcgc
     1261 gcatttccgc ctcgccggtc cgttcggcgc caggattgcg cgcgtgccag acccggcaaa
     1321 tctcggcctg catatgccgg gcgaggagca tgaccatggc gcgccgctct ggcgcggttc
     1381 gctgcccttt ctcggcctgc cgcacaccat cgtggtgaac cgcgccggca agcgtttcgc
     1441 caacgaggcg ttctaccgcg ccgtctatta cgccgtggat ttcatcgatg gcgcgaccca
     1501 gacccatccg aattatccct gctgggtggt gttcgacagt caggcgaggc gcaaataccc
     1561 attcgggacc gccatgccgg gccaggacct gccggaaggg atgggcgtga aggccgatag
     1621 cctggacgag ctcgcggaca ggatgggcgc ggacccggaa gggctacgcc agaccatcgc
     1681 gcgtttcaac gctcatgccg aggccggcca ggaccccgac ttccagcgcg gctccttccc
     1741 ctgggccgcg gcgatggcgg gtgatctggg ccacaaaccc aaccccaatc ttgggccatt
     1801 gcttgaggcg cccttctacg ccgttgagct gaagcgcatg ggcggcggcg ggatcggcgg
     1861 caccgggctg ctggcggatc atcattgcca ggtactgggc tgggacggga agccgatcgc
     1921 ggggctctac gcggctggca atagcatggc caggctcgat acgggtgcaa tgatgcaaag
     1981 cggcctctcc aacgcacgcg gtatgaccca tggctatctc gctgggcgcc
//
LOCUS       DASQCV010000435         1958 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1255763, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000435 DASQCV010000000
VERSION     DASQCV010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1255763"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..624
                     /locus_tag="VEQ16_06600"
     CDS             <1..624
                     /locus_tag="VEQ16_06600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014248330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HYP63537.1"
                     /translation="NEGSLKPLTIIVPEGSFLAPPPGSAVVAGNTEVSQAVTVALLGA
                     MGVCASAQATMNNFLFGNAKHQYYETICGGAGAGPGFDGCSAVHTHMTNTRITDPEVM
                     ELRHPVRVEEFSIRRGSGGAGKFHGGDGVVRKIRFLEPMTATITASRRTQPPFGLEGG
                     APGALGEQFVERENGTLVPLPGRAETELAAGEAFIIHTPGGGGYGAL"
     gene            621..>1958
                     /locus_tag="VEQ16_06605"
     CDS             621..>1958
                     /locus_tag="VEQ16_06605"
                     /inference="COORDINATES: protein motif:HMM:NF017021.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HYP63538.1"
                     /translation="MRRKHLFWLLPAGLAAIFLGTLLALPGFVASQNHRPAMERFASS
                     LTGREVHIEGNLSLALLPRPRLTASRITIAGPDQEVISAKSLALDISLPSLLRGQLAV
                     QTLNLDSPVINFPWPLPGGPGAIAPPPWLAALHAHLNNATITLGGLGFTQINADLFTG
                     PDGAVSISGNGLLRRHGVTVSVALGAAGLDGTAPLSAQASAGPASATFTGTLNVQSVA
                     AGQITLTLPGVLTGSANLSADGSALVLTDLKLQQGQKSLSGSASFDLTQPRVKAELIG
                     QNLDFSQLGNLPGWATSLPADITLDASNIMLLGTNFPALSFSLNTSPAGRELHSFSLS
                     LPGGGTLAGNGKLDGGGALSGQVSLAVPDSAALLATYHLPALSNWPSAHLTAKLAGTA
                     ARPALQDLTGTLGTDHVTGNLVLGPHHVAGQLGFDHLALAPLAGWAGQSPPGTL"
BASE COUNT          315 a          688 c          617 g          338 t
ORIGIN      
        1 aacgaaggca gtttgaagcc gctcaccatc atcgtgcctg agggcagctt tctcgccccc
       61 ccgccgggct cggccgtggt ggcaggcaat acggaggtga gccaggccgt caccgttgcg
      121 ctgctcggcg ccatgggggt ctgcgcctcc gcccaggcca ccatgaataa tttcctgttt
      181 ggtaacgcga agcaccaata ttacgagacg atctgcggcg gcgccggggc cggaccggga
      241 tttgacggct gctccgccgt gcatacccat atgaccaaca cccgcattac cgaccccgag
      301 gtgatggaac tgcgccatcc cgttcgggta gaggaatttt ccatccggcg cggctcgggc
      361 ggcgccggaa aatttcacgg cggggatggc gttgtccgca aaatcaggtt tttagagccc
      421 atgaccgcca ccatcaccgc ctcgcgccgt acccaaccgc ccttcggcct ggaaggcggc
      481 gcccccggcg ccctgggtga gcaattcgtg gagcgggaga atggcacatt ggtgcccctg
      541 cccggccgcg cggaaaccga gcttgcagcc ggagaggcct tcatcatcca tacgccgggc
      601 ggcggcgggt acggcgcgct ttgagacgta agcatctctt ctggctgttg ccggccggct
      661 tggccgctat ttttctcggc acgctgctgg cgctgccggg cttcgtcgcg tcgcaaaacc
      721 accggccggc gatggagcgc ttcgcctcca gcctcaccgg gcgcgaagtg catatcgagg
      781 gcaatctctc cctcgccctg ctgccgcgcc cccgcctcac cgccagccgc atcaccatcg
      841 ccgggccgga ccaggaggtg atcagcgcga aatccctggc gctcgacatc tcgctcccgt
      901 ccctgctgcg cggccagctg gcggtgcaga cgctcaatct cgacagcccg gtcatcaatt
      961 tcccctggcc actgccgggc ggccccggtg ccatcgcgcc gccgccatgg ctggccgctc
     1021 tgcacgcgca tctgaacaac gccaccatca cgctgggggg gctcggcttc actcagatta
     1081 atgccgatct cttcaccgga ccggacggag cggtgagcat ttccggcaat ggcttgctgc
     1141 gcagacatgg cgtgacggtg agcgtggcgc tcggcgcggc ggggctggat ggcacggcgc
     1201 cactctcggc ccaggccagc gccggaccgg ccagcgccac tttcaccggc acgttgaatg
     1261 tgcagagcgt ggcagcggga caaatcactc taactctgcc cggcgtgctc acgggcagcg
     1321 caaatctcag cgccgatggc agcgcgctgg tgctcaccga cctgaagctg caacaagggc
     1381 aaaaaagcct ctccggcagc gcgagtttcg acttgacgca gccccgggtg aaagccgagc
     1441 tgatcgggca gaatctcgat ttcagtcagc tcggcaatct gcccggctgg gccacctcgc
     1501 tgccggcgga tatcacgctc gatgccagta atatcatgct gctgggcacg aattttccgg
     1561 cgctgagctt cagcctgaac accagcccgg ccggccggga gctgcattct ttctcgctct
     1621 ccctgcccgg tggcggcacg ctcgcgggta acggcaagct ggacggcggt ggcgccctgt
     1681 cgggtcaggt cagcctcgcc gtcccggaca gcgcggctct gcttgccacc tatcatctgc
     1741 ccgctttatc caactggccg tcagcgcatc tcaccgcgaa gctggcaggc acagcggcac
     1801 ggcccgcgct gcaggacctc actggcactc tggggacgga ccacgttacc ggtaatctcg
     1861 tgcttggccc ccaccatgtg gcggggcagc tcggcttcga ccatctcgcc ttagcgccgc
     1921 ttgccggctg ggccgggcag tcgccgccgg ggacatta
//
LOCUS       DASQCV010000436         4681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2913558, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000436 DASQCV010000000
VERSION     DASQCV010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4681
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2913558"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..373)
                     /locus_tag="VEQ16_06610"
     CDS             complement(<1..373)
                     /locus_tag="VEQ16_06610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP63539.1"
                     /translation="MADTTLQAGDLFKAGRLEEALAAANAAVKAAPTDLGRRVLLAEL
                     LLASGNLERADVILDAAGQLDPSAATVVAEFRQLLRAETARRQLYRDGRVPEFLGEPE
                     PSLQASLAALVALREGDAEAAA"
     gene            complement(397..2115)
                     /gene="tssC"
                     /locus_tag="VEQ16_06615"
     CDS             complement(397..2115)
                     /gene="tssC"
                     /locus_tag="VEQ16_06615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013641188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033104 - type VI protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     large subunit"
                     /protein_id="HYP63540.1"
                     /translation="MTDSDETIIFRAPRPPRPTAGADASVPPLEETTLEALAPETSAE
                     PPAPPPDEDVLAAVLEAPVPPPPPVEIPDIEPLRAPVLEGAFFGSKHEDIGTRLAAFL
                     TTEKQPLQAWFGTKTFRELDAAALAGLLDRDIVQLDQMISAQLDAILHHQRLRRLEGS
                     WRGLSWLAARLALAGRVKLRILNASWAEICRDFDRAPEFDSSQLFRAVYEDEFGMAGG
                     EPYGLLLVDHEIRHQPGPGATTDDVSALANLASVAAAAFSPMVIGASPALLGVDAFTE
                     LSGVADPAAGFVAREYERWRSLASRDDTRFIAISMPRTLARPPWDEALSRHRGFRYRE
                     AAERHDARTWSSGIYLVAACVARAFETYSWPADMRGYDIDRIGGGLIENLPEPIFSVD
                     PKDGLDRTALEVQFTDKQERALVAAGLLPIGTLPFGGQALLGTTRSLQSTAAAPRFTG
                     ASAAAAAANTRLSSQFNTMLCVSRFAHYVKIIGRDMVGSFQTAEEIQSGLQNWLMRFV
                     NANTDPGPEVMARYPLRDASVGVTEIPGKPGVFGCTVQLQPHFQLDDIAASFRLMTEL
                     AVPKPR"
     gene            complement(2158..3651)
                     /gene="tssC"
                     /locus_tag="VEQ16_06620"
     CDS             complement(2158..3651)
                     /gene="tssC"
                     /locus_tag="VEQ16_06620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033104 - type VI protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     large subunit"
                     /protein_id="HYP63541.1"
                     /translation="MSGTQTQGAPAAATTTSEGLSFLDQVVSATKQTAPDQAQDLVKN
                     LIQQALSGTVTFDKNLTRTIDRAIAAIDTKMSTQLNAIMHNERFSKLEGSWRGLHYLV
                     NNSETGTSLKLRVLNMTKRELNRDLTKAVEFDQSQLFKKIYENEFGTPGGEPYGALVG
                     DYEWTNHPDDVESLRLVSNVAAASFAPFISAAGAGMFGFDDWTELTKPRDLAKIFDSS
                     EYAKWRSFRETDDARFVSLVMPRVLARSPYGAATKPVDEFNYEEAPVDATGAAASMGH
                     NDYCWMNAAYAMAARLTDSFAQSGFCTTIRGAEGGGKVENLPTHLFQSDDGDMDGKCP
                     TEVGITDRREFELSSLGFLPLCHYKNTDYAVFFGAQTCQKPKKYDRPDATANAAISAR
                     LPYLMATSRFAHFLKVMARDKIGSFMEADECEVWLNRWINNYVNSNADAGAESKAKFP
                     LREAKIEVKEIPGKPGSYNAVAYLRPWLQMEELSTSMRMVARIPQKA"
     gene            complement(3655..4164)
                     /gene="tssB"
                     /locus_tag="VEQ16_06625"
     CDS             complement(3655..4164)
                     /gene="tssB"
                     /locus_tag="VEQ16_06625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     small subunit"
                     /protein_id="HYP63542.1"
                     /translation="MSGSVHDKLNRVRKPRVHISYNVETEGAQIERELPFVVGVMGDF
                     SGDPTQPLRPMTERKFTQIDRDNFNDVMARMAPGLNLKVDNTLADDGSQMSVNLKFNS
                     IEDFDPARVVEQVPALKSLLETRNKLRDLLSKADRSEELETLLEQVLQNNDELKTLSA
                     QLGLDNKEG"
     gene            complement(4319..>4681)
                     /locus_tag="VEQ16_06630"
     CDS             complement(4319..>4681)
                     /locus_tag="VEQ16_06630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system protein TssA"
                     /protein_id="HYP63543.1"
                     /translation="PTARVAGIFERIESLIARYAPEGDNEAAEAVAEAVPASGTNDAA
                     PAAGTPRRLATREDALKQLSEIADFFRRTEPQSPLAYTIDDAIRRGRLSWPELIAEIV
                     RDDQTRYNILNSLGIKAE"
BASE COUNT          795 a         1399 c         1635 g          852 t
ORIGIN      
        1 tggcggcggc ttcggcatcg ccctcgcgca gcgccaccag ggcggcgagc gaggcctgca
       61 ggctgggctc gggctcgccg aggaattccg gcacgcggcc atcgcggtag agctggcggc
      121 gcgcggtctc ggcgcgcagg agctggcgga attcggccac caccgtggcg gcggaggggt
      181 cgagctggcc ggcggcgtcg agaatgacat cggcccgctc cagattaccg gacgcgagca
      241 gcagctcggc cagcagcacg cggcggccga gatcggtggg ggcggccttc acggcggcat
      301 tggcggcggc gagcgcctct tccaaacgcc cagccttgaa cagatcgccc gcctgcaatg
      361 tggtgtcagc catttttgct ctccttggaa actcggttaa cgcggcttgg gcacggccag
      421 ctccgtcatc agccggaacg aggcggcgat gtcgtcgagc tggaaatgtg gctgcaattg
      481 cacggtgcag ccgaacacgc ccggcttgcc gggaatttcg gtgacgccga cagaggcgtc
      541 gcgcaacggg tagcgggcca tcacctccgg gcccggatcg gtgttggcat taacgaaacg
      601 catcagccag ttctgcagcc cgctctggat ttcctcggcc gtctggaagg agccgaccat
      661 gtcgcggccg atgatcttga cgtagtgcgc gaagcgggag acgcagagca tggtgttgaa
      721 ttgcgaggag agccgcgtat tggcggcggc cgcggcggca ctggcgccgg tgaagcgcgg
      781 cgcggcggcg gtgctctgca ggctgcgcgt ggtgccgagt aacgcctgcc cgccaaaggg
      841 cagcgtaccg atgggcagca ggccggcagc gaccaaagcg cgctcctgct tgtcggtgaa
      901 ctgcacctcc aatgcggtgc ggtcgagccc gtctttgggg tccaccgaga agattggctc
      961 gggcaggttt tcaatcagcc cgccgccgat acggtctatg tcgtagccgc gcatgtcggc
     1021 gggccagcta taggtctcga aggcgcgggc gacgcaggcg gcgacgagat agatgccgct
     1081 cgaccaagtc cgcgcatcat gccgctccgc cgcctcgcga tagcggaagc cgcgatggcg
     1141 gctcagcgcc tcgtcccagg gcgggcgcgc caaagtgcgg ggcatggaga tggcgatgaa
     1201 gcgcgtatcg tcacgcgagg ccaggctgcg ccagcgctca tattcgcgcg cgacgaaacc
     1261 ggccgccggg tcggccacgc cgctgagctc ggtgaaagcg tccaccccga gcagcgccgg
     1321 cgaggcgcca atgaccatgg gcgagaaggc ggcggcggcg acggaggcga gattggccag
     1381 ggccgagaca tcatcggtgg tggcgccggg gccgggctgg tggcggattt catggtcgac
     1441 cagcagcagc ccgtaaggtt cgccgccggc catgccgaat tcgtcctcat acacggcgcg
     1501 gaagagctgg ctggaatcga attccggggc gcggtcgaaa tcgcggcaga tttcggccca
     1561 ggaggcgttg aggatgcgca atttcacccg ccccgccagg gccaggcggg cggcgagcca
     1621 ggagaggccg cgccagctcc cttccagccg gcgcaggcgc tgatgatgca ggatcgcatc
     1681 gagctgggcg gagatcatct ggtcgagctg gacgatgtcg cggtccagca ggccggccag
     1741 ggcggcggca tccagctcgc ggaatgtttt tgtaccgaac caggcttgca gaggctgttt
     1801 ttcggtggtg aggaaggcgg cgaggcgcgt accgatgtct tcgtgcttgc tgccgaaaaa
     1861 ggcgccttcc agcaccgggg cgcgcagcgg ctcaatatcg gggatttcca ccggcggcgg
     1921 tggcgggacg ggcgcctcca gcacggcggc gagcacatcc tcgtccggcg gcggcgcggg
     1981 cggttcggca gatgtttcgg gagcgagtgc ctctagcgta gtctcttcga gtggcggcac
     2041 agacgcgtcc gcacccgccg tggggcgcgg cgggcgcggg gcgcggaaaa tgatggtttc
     2101 gtcggaatcc gtcatggccg ggccccattc atggcaaaca gagcccggcc gccttggtta
     2161 agccttttgc ggaatgcggg cgaccatgcg catgctggtc gacagctctt ccatctgcag
     2221 ccaggggcgc agataggcga cggcgttgta ggaacccggc ttgccgggga tttccttcac
     2281 ctcgatcttg gcctcgcgca gcgggaactt ggccttgctc tcggcgccgg catcggcatt
     2341 ggagttgacg tagttgttga tccagcggtt cagccaaact tcgcattcat ccgcttccat
     2401 gaaggagccg atcttgtcgc gcgccatcac cttcaggaag tgcgcgaagc gcgaggtcgc
     2461 catgagatag ggcagacgcg ccgaaatggc ggcgttggcc gtggcgtccg ggcggtcgta
     2521 cttcttgggc ttctggcagg tctgggcgcc gaagaacacg gcatagtcgg tattcttgta
     2581 gtggcagagc ggcaggaagc cgaggctgga cagctcgaat tcgcgccggt cggtgatgcc
     2641 gacctcggta gggcacttgc cgtccatatc gccatcgtcg gactggaaca gatgggtggg
     2701 caggttctcg accttgccgc cgccttcggc gccgcggatg gtggtgcaga agccggactg
     2761 ggcgaagctg tccgtcaggc gcgcggccat ggcgtaggcg gcattcatcc agcaataatc
     2821 attatggccc atcgaggccg cggcgccggt ggcatccacc ggggcttcct cataattgaa
     2881 ctcatccacc ggcttggtag cggcgccata ggggctgcgc gccagcacgc gcggcatgac
     2941 gagcgagacg aagcgggcat catcggtctc gcggaagctg cgccatttcg catattcgct
     3001 ggagtcgaaa atcttggcga ggtcgcgcgg cttggtcagc tccgtccagt cgtcgaagcc
     3061 gaacatgccg gcgccggcgg cggagatgaa gggggcgaag gaggccgcgg cgacgttgga
     3121 gaccagacgc agcgattcca catcgtccgg gtggttcgtc cactcataat cgcccaccag
     3181 cgcgccatag ggctcgccac cgggggtgcc gaactcgttc tcgtagattt tcttgaagag
     3241 ttggctctgg tcgaactcaa ccgccttggt gaggtcgcgg ttgagctcgc gtttggtcat
     3301 gttgagcacg cgcagcttga ggctggtgcc ggtttcggaa ttattgacca gataatgcag
     3361 gccgcgccag ctgccttcca gcttggagaa acgctcatta tgcatgatgg cgttgagctg
     3421 agtggacatc ttggtatcga tcgcggcgat ggcgcggtcg atggtgcggg tcaggttctt
     3481 gtcgaaggtg acggtgccgg agagcgcctg ctggatcagg ttcttgacca gatcctgggc
     3541 ctggtcgggc gcagtctgct tggtggcgga aacgacctga tcgaggaagc tcaagccttc
     3601 cgaggtggtg gtcgcggcgg cgggggcgcc ttgtgtctgc gtgccggaca tggcttagcc
     3661 ctccttattg tcgaggccga gctgggccga gagtgtcttc aattcgtcat tattctgcag
     3721 cacctgttcc agcagggtct ccaactcctc ggagcggtcc gccttgctca gcaggtcacg
     3781 cagcttgttg cgcgtttcca gcaggctctt cagcgccggc acctgctcaa ccacgcgggc
     3841 cgggtcgaaa tcctcaatcg aattgaactt gaggttgacc gacatctggc tgccatcgtc
     3901 agccagcgta ttatccacct tcaggttcaa ccccggcgcc atgcgggcca tgacgtcatt
     3961 gaaattatca cggtcgatct gcgtgaattt gcgttcggtc atgggacgca gcggctgggt
     4021 cggatctccg gagaaatcgc ccatcacgcc gacgacgaag ggcagctcac gctcgatctg
     4081 cgcgccctcg gtttcgacat tatagctgat gtgaacgcgc ggcttgcgca cgcgattcaa
     4141 tttatcatgt acagagccac tcattctgca agtctcccac gaaaccggtg aacacggaac
     4201 agcaactgcc aggaaggcag gttagtcttg gcctggacgg cgaatcagtc ttggctggtt
     4261 ggccgtagcg ataaacaagg cctgcctccg ggtcaaccgg tagcgttgcc aacccagact
     4321 attccgcctt gatacccagg ctgttgagaa tattgtaacg cgtttggtcg tccctcacaa
     4381 tttccgcgat cagctccggc cagctcaggc ggccgcggcg gatggcgtcg tcgatcgtat
     4441 aggcaagtgg cgattgcggc tcggtgcggc ggaagaaatc agcgatttcg gataattgtt
     4501 tcagagcgtc ctcgcgggtc gccaggcggc gcggggtgcc ggcggcgggc gcggcatcat
     4561 tcgttccgct cgcgggaacg gcttccgcca cggcttcagc cgcttcattg tccccttctg
     4621 gcgcataacg cgcaatcagg gactcgatcc gttcaaaaat gccggcgaca cgcgcggtgg
     4681 g
//
LOCUS       DASQCV010000437         1699 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1423156, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000437 DASQCV010000000
VERSION     DASQCV010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1423156"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(951..1166)
                     /locus_tag="VEQ16_06635"
     CDS             complement(951..1166)
                     /locus_tag="VEQ16_06635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63544.1"
                     /translation="MRKQAVKLLKAHFPQTEIERDDLHRFKEVPPAALVAHMDEHMPG
                     AVAKMQAFARSLAGRARGQQGEGAALR"
     gene            complement(1293..>1699)
                     /locus_tag="VEQ16_06640"
     CDS             complement(1293..>1699)
                     /locus_tag="VEQ16_06640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008619826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63545.1"
                     /translation="EHRVPLSERALEILQDLPHEHGNPFLFPGGKAAAPLSQMAMLQL
                     LRGMRPGLSVHGFRSTFRDWCAERANYPSEVAEMALAHTVSDKVEAAYRRGDLKDKRR
                     RLMAEWARYCAQQPVARGDNIRQLGAARESAS"
BASE COUNT          312 a          577 c          499 g          311 t
ORIGIN      
        1 gctgtcggca gcggtcagaa taacatagat cgttgatgtg ggaatgcggg tttacgctgg
       61 gttagactga agcggctgca catctggaga tggtttccgt cgtcatggcg cgcccgacag
      121 tgcatcgagt cgtacccaac ggacgtagaa atcgcctttc aagagactac atgttcgcca
      181 tggcccagcc cctctgtccg cattgcgacc ggccgatgaa gctggtccgc tctatccctg
      241 cactgggtcc aggttggcct acgctgctcg ccttttattg ctccccatgc tgtcacgcag
      301 agaccaaaga ggaccgcgct gcataggcgc cgcccgtaag cctgcgtgca ggcacgttgc
      361 aaaatggttt accctccttg attagatgaa cgcattcaac gacgacgcgg cttacaacat
      421 ggtagccgtc agcgcgacgg tcgcgctcta tcgcgcgctg actttgccac aatttgccga
      481 tgagcgtcac tgatcggtga atggttcgct agagaccaga acctatgtca tactaagcca
      541 tggcaaaggg ctggaagatc agcaccgtga ggcccggcag aggggcgtca ggcgcaatgc
      601 gccaggaact attccttgtc gccattcccg ataaagtaga ggccgtccga gcggtccaag
      661 catgccttcc cgacgcggaa gttaagatag attcggaagc cggtccggat atccttgcgg
      721 aataggcgtg acccccgccc gcccccaagc accccacacc acaccacgcc tgctctcggc
      781 gagaggcaaa gtcctccatg gttgcccccg ccctgccacc accgggcgcg gtggtgcgcg
      841 ttcagcccga caggcatgtc ggatgccctc cagggcgacc aacgcatggg tggggagaac
      901 acccgcctgt ggctgctagg ccactgaaac tttccgtatg tccggaaaga ttagcgcagc
      961 gccgcgcctt cgccctgctg cccgcgagca cgccctgcca gagagcgcgc gaatgcctgc
     1021 atcttcgcca ccgctcccgg catgtgctcg tccatgtggg caaccagcgc cgcgggcggc
     1081 acctccttga accggtgcag gtcgtcgcgc tcaatctccg tctgcgggaa gtgcgccttc
     1141 agcaacttga ccgcctgctt gcgcaatcgc aattccacct gctggtcgcg caggcgccgg
     1201 taaggcgaac accgagtcta caccctcttg cagatgcagc tgctcgccgc gctggacgcg
     1261 ctccagcaac tcgtcgaact tcccgccgcg cttcacgacg cgctctcccg cgcggcgccc
     1321 aactgccgga tgttatcgcc cctcgccacg ggttgctgcg cgcagtaacg cgcccattcc
     1381 gccatcaggc ggcggcgctt gtccttcaga tcgccgcgcc tgtacgccgc ctccaccttg
     1441 tcgctgacag tatgcgccag cgccatctcc gccacttcgc tcggataatt ggcacgctcg
     1501 gcgcaccagt cgcggaacgt ggaacggaac ccatgcacgc tcaggccggg gcgcatgccg
     1561 cgcagcagct gcaacatagc catttgcgag agcggcgctg ccgccttgcc gccggggaac
     1621 aggaaggggt tgccgtgctc gtgcggcaag tcttgcagga tttccagcgc acgctcggac
     1681 aacggcacgc ggtgctcct
//
LOCUS       DASQCV010000438         2085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3080687, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000438 DASQCV010000000
VERSION     DASQCV010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3080687"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            10..>2085
                     /locus_tag="VEQ16_06645"
     CDS             10..>2085
                     /locus_tag="VEQ16_06645"
                     /inference="COORDINATES: protein motif:HMM:NF019350.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HYP63546.1"
                     /translation="MIISAVAVDGDGGIWVETHSGLCKLRPQPTAASGIVERVYTSEL
                     SRNSIVECLYVTRSGRLWVGTRNGASEWTGDPKRPFRHWGTAEGITDTDTGVEAIGED
                     GAGNLWIGTGDEGVKRIARNGLVTYRQADGLARQSISAFTEGRDGELLAVSLTVDSLD
                     LNRFDGDHFTAIHPALPGHIRWLGWGYGSTAFQDREGDWWLPTGEGLCRYEGRGGAAR
                     LARIPPKALYTRKDGLASDTIFKLFEDGRGDIWVATNAPTTVSRWDRASGSFQRPPVI
                     ENEWLITAFAEDRGGNVWVGTSLGFFRWRAGRLERVDRPGVPPESAAALYFDRSGRLW
                     LGNRQGLFRCDDPLKESPQFQKILGEAVRCLTEDRWGRMYACTGRGVACLNPATGRMR
                     RFTTADGLAPGVFNCAYEDRRGDIWFCLSLGASRFTPQPDEPPLAAPVYITGVRSSGR
                     DVPIAEWGETAVGRIPLRPYENSVEVDFVGIELGAGRSLDYEYKLDGAQRDWQALGRE
                     RSIRFASLAPGVYRLLVRAINSEGAVTDPPASVELFVATPLWRRWWSLSLMAIALATS
                     LYTAHRRRMHHALELERVRTRIATDLHDDVGASLSQVAIMSEVVSRHAAPDRKVLEEI
                     AGTSRELLQSMSEIVWAIDPSHDRLHDLTQRMRWFAGETLSRCDIALHFSIPEQEREL
                     RLSVETRRQV"
BASE COUNT          369 a          630 c          704 g          382 t
ORIGIN      
        1 cgtaaggagg tgattatttc cgccgtggcc gtcgatggag acggcgggat ttgggtagag
       61 acgcactctg ggttatgcaa gctgcggccg cagccgaccg ccgccagcgg catcgtcgag
      121 cgcgtctata ccagcgagct cagcaggaat tccatcgtcg agtgccttta cgtcacccgt
      181 tccgggcgtc tgtgggttgg caccaggaac ggggcgagtg agtggaccgg cgatccgaag
      241 cggccgtttc gccactgggg cacggccgag gggattactg atactgatac tggcgtagag
      301 gccatcgggg aggatggggc cggaaacctc tggatcggga cgggcgacga aggggtgaag
      361 cgcatcgcgc gcaatggtct cgtgacatac cggcaggcgg acggcctcgc ccgccaaagt
      421 atcagcgctt tcacggaagg gagggacggc gaactgcttg ccgtcagcct cacggtagat
      481 tcgttggacc tcaaccgctt cgatggcgat catttcaccg ccattcatcc agcgctgccg
      541 gggcatatcc gctggctggg ctggggttat ggatcgaccg cgttccagga ccgcgaaggc
      601 gactggtggc tgccgaccgg cgagggtttg tgccgctacg aggggcgcgg cggcgccgcc
      661 aggctggcgc gcataccgcc taaagccctc tacaccagga aggacgggct ggccagcgac
      721 acaattttca agctcttcga ggacggccga ggcgatatct gggttgctac gaatgctccc
      781 acgaccgtga gccgctggga ccgcgccagt ggctcctttc agagaccacc ggtcatcgag
      841 aacgagtggc tgattaccgc ctttgcggaa gaccgtggcg gcaatgtatg ggtggggact
      901 tcgctcggtt tctttcgctg gcgtgccgga cggctcgaac gcgtggaccg cccaggcgtt
      961 ccaccggaat ccgcagccgc gttatatttc gaccgctcgg gtcgcctctg gctcggcaat
     1021 cgccaggggc ttttccgctg tgacgatccc ctgaaggagt cgccgcaatt tcagaagatc
     1081 ctgggtgagg cggtgcgatg cctgacggaa gaccgctggg gccggatgta tgcctgcaca
     1141 ggccgcggag tcgcttgtct gaatccggcg accggacgga tgcgccgctt tacgaccgcc
     1201 gatggattag cgcccggagt cttcaattgc gcttatgaag accggcgagg cgacatctgg
     1261 ttctgcctca gtttgggcgc gtcgcgattt acaccgcaac cggatgagcc tcccctggcg
     1321 gcaccagtct acatcacagg ggtccgatct tccgggcgcg acgtgccaat cgcggaatgg
     1381 ggcgaaacag cagtcgggcg aattccattg cggccctatg agaactcggt tgaggtggat
     1441 ttcgttggga tcgagctggg cgccggccga tcgctcgatt atgaatataa gctggatggc
     1501 gcccagcgcg attggcaggc gctgggccgc gagcggtcga tccgcttcgc cagtctggcg
     1561 ccgggtgttt accgcctgct ggtgcgcgcc atcaacagcg aaggcgcggt gacggacccg
     1621 cctgcctcgg tggaactgtt cgtcgccacg ccgctatggc gccgctggtg gtccctgagc
     1681 ctcatggcaa ttgcactcgc cacgagcctc tacacggccc accggaggcg aatgcaccat
     1741 gcgctggaac tggaacgggt ccgcacccgt atcgctacgg atctgcacga cgatgtgggc
     1801 gcaagccttt cgcaggtggc catcatgagc gaggtggtga gccgccacgc cgcaccagac
     1861 cgcaaggtgc tggaagagat cgcaggcact tcgcgcgagt tgctgcaatc catgagcgaa
     1921 atcgtatggg cgatcgaccc cagccacgac cgcctgcacg atctcacgca gcgcatgcgc
     1981 tggtttgcag gcgagaccct ctcgcgctgt gacattgccc ttcatttttc gattcccgag
     2041 caggaacggg aactccgcct cagcgtggaa acgcggcgcc aggtc
//
LOCUS       DASQCV010000439         1732 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_757972, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000439 DASQCV010000000
VERSION     DASQCV010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757972"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..781)
                     /locus_tag="VEQ16_06650"
     CDS             complement(<1..781)
                     /locus_tag="VEQ16_06650"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HYP63547.1"
                     /translation="MGNFPSASRLWLQALEAVSFIERDSALTLGGVLNDLANRYGTAV
                     ALIDDEETLSYRGLAERANRYANWARAEGLAPGATIALLMRNCADYVAIWAGLSQAGC
                     TVALINTNLGQGALAHAIRTASAAALIVETELQDNIAPLLPELPPLRIWRHGAGESAW
                     PRADLAAAAASAARPPPLQEAYGTPALLIYTSGTTGLPKAANVSHARILQWSYWFAGL
                     MNTQASDRLYNCLPMYHSTGGVSAIGAMLVNGGSVYIRRRFS"
     gene            complement(785..1444)
                     /locus_tag="VEQ16_06655"
     CDS             complement(785..1444)
                     /locus_tag="VEQ16_06655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63548.1"
                     /translation="MDNIVVPQYKLVITEIGHLRWTELDRQELSAIAMAYYYFSVQFR
                     ENLQIAASIFPNDEKLQHLMAEECNTANLSPWPAIAAPGERMNHDEFMLRAVVLSAMP
                     EETVDKVRKAGFAYLQKSRGYDADTRARSIASYEDGGLEVTFRAMLTAPDWSTPTLRA
                     FWHFLDAHVRFDSDPEQGHGALSRHLQPDDRVLPLWEDFYDLLIQAAPRLLPKGVRLA
                     F"
     gene            complement(1469..>1732)
                     /locus_tag="VEQ16_06660"
     CDS             complement(1469..>1732)
                     /locus_tag="VEQ16_06660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63549.1"
                     /translation="GALGVLCVAPPVPHRPVREIVDAIVTSGEAWVAAASFEGRDVIR
                     ICITNGQTSRNDIETLVKLLRRHAAFSRPQAYFPKPVGVPRHP"
BASE COUNT          320 a          522 c          582 g          308 t
ORIGIN      
        1 ccgagaagcg gcggcgaata tagacggagc cgccattgac gagcatcgcc cctatggcgc
       61 tgaccccgcc cgtgctgtga tacattggca ggcagttata gagccggtcg ctggcttgcg
      121 tgttcatcag cccggcgaac cagtagctcc attgcaatat acgggcgtgg ctgacattgg
      181 ccgccttagg caggccggtg gtgcctgatg tgtagattag cagcgctggc gtgccataag
      241 cctcctggag gggcggcgga cgggcggcgc tggccgcggc ggcggcgagg tcggcgcgcg
      301 gccaggcgct ttcacccgcg ccatggcgcc agatgcgcaa tggcggcagc tccggcagga
      361 ggggggcgat attgtcctgc agctccgtct cgacgatcag cgcggcggct gaggccgtgc
      421 ggatggcatg ggccagggcg ccctgcccga gattggtgtt gatgagggcg acggtgcatc
      481 ccgcctgtga caggccggcc cagatggcga cataatcggc gcaattgcgc atcagcagcg
      541 cgatggtggc gccgggggcg aggccttccg cccgcgccca attggcgtag cggttggcgc
      601 gctctgccaa accgcggtaa ctcagcgttt cctcatcatc gatcagtgcc acggcggtgc
      661 cgtaacgatt ggccaaatcg ttcagcacgc cgccgagcgt caaggcgctg tcgcgctcga
      721 tgaagctgac cgcctccaga gcctgtagcc agaggcgtga ggcggaagga aaattaccca
      781 tcgcttagaa agccaaccgc acgcccttgg gcaaaagccg gggggcggcc tggatcagaa
      841 ggtcgtaaaa atcctcccag agcggaagca cccggtcatc gggctgcaaa tgccggctga
      901 gcgcgccgtg cccttgctct ggatctgaat cgaaacggac atgcgcgtcc aggaaatgcc
      961 agaaggcccg cagcgtcggg gtgctccaat cgggcgcggt cagcatggcg cggaaggtga
     1021 cttccaggcc gccatcctca tagctggcga tgctgcgcgc ccgcgtgtcg gcatcgtagc
     1081 cacgcgattt ctgcagatag gcgaagcccg ctttcctaac cttgtcgacc gtctcctccg
     1141 gcatggccga gagaaccacc gcgcggagca tgaactcgtc atgattcatc cgctcgcccg
     1201 gcgccgcgat ggccggccag ggcgacagat tggccgtatt gcattcctcg gccatgagat
     1261 gctgaagctt ctcatcattt ggaaatatcg atgcggcgat ctgcaggttt tcccggaact
     1321 ggactgagaa ataataatag gccatggcga tggcgctgag ctcctggcgg tcgagctcgg
     1381 tccatcgcag atggccgatt tcggtaatga cgagcttgta ttgtggaacg acaatattat
     1441 ccatggcgcg cattcctcct cgatgctgtt acggatgccg cggcaccccg acgggtttag
     1501 ggaagtaggc ctgcggcctt gaaaatgccg catggcgccg caaaagtttg accagcgtct
     1561 caatgtcgtt gcggctggtc tggccgttgg tgatgcagat gcggatcaca tcgcgccctt
     1621 caaagctggc ggcggcaacc caggcttcac ccgaggtgac gatggcgtcg acaatctcgc
     1681 gcaccggccg gtgtggaacg ggcggtgcca cgcagagcac gccgagggcg cc
//
LOCUS       DASQCV010000440         1570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2748248, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000440 DASQCV010000000
VERSION     DASQCV010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2748248"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            114..239
                     /locus_tag="VEQ16_06665"
     CDS             114..239
                     /locus_tag="VEQ16_06665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63550.1"
                     /translation="MAKGQKRSGREPKKPKANKKKKGQPETGLNIQSNKGKPAGL"
     gene            complement(341..>1570)
                     /locus_tag="VEQ16_06670"
     CDS             complement(341..>1570)
                     /locus_tag="VEQ16_06670"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP63551.1"
                     /translation="TQFLGAFNDNLFKNALIILITFNLVQAAGHGQMLVTIATGVFIL
                     PYFLFSAMAGRLADKFEKQKIIHIIKATEILIMGVATVAFFTGSITLLMTVLFLMGTH
                     STFFGPLKYGILPVHLQTSELLSGNAMIEAGTFLAILLGTIAGGVLILTDYGLLTVSL
                     LALAVAVGGLIASLYIPRAPAAAPGLEVGANIVTDTWELIRYAGSRWPIMLPILAVSW
                     FWLIGATFLAQFPAFAKDVLASDDHVVTLFLTAFSIGIGVGSMLCTRLLKGQISMRYV
                     PVAAIVMTAFILDLYLATRDISAGGEPLQNIPAFLSRPVAWRVLIDLLMLAIASGFYI
                     VPPNTLLQVRSEPSHRARVIAANNVVNAAFMVGGSVLAVLLIARHFTVPEIFLTFGIL
                     NLLVGLSLYLPRTRAAA"
BASE COUNT          347 a          429 c          561 g          233 t
ORIGIN      
        1 ccgcccattg gcggggcgag cgcagctttg ctagcatggc aggcgcagcg ggcgattgcg
       61 gccgtctctc atggagggga tgaccaatcg cttgcgagac agagaggatg accatggcaa
      121 aaggtcagaa gagaagcggt cgggagccga agaagccgaa ggccaacaag aaaaagaagg
      181 gccagccgga gaccggcctg aacattcagt cgaacaaggg gaagcccgcg gggctctgat
      241 cgcgccggtc gcgcgaccgg cggattagat aggctgtctt ggaaggcgat ccgggggatc
      301 gggcctggag ggtggctttt tgcccgcaat agcggcccgg tcaggcggct gccctcgtcc
      361 gggggagata gagcgaaagc cccaccaata aattgagtat gccgaaggtg aggaagatct
      421 ccggcacggt gaaatgccgc gcgatcaaca gcactgccag gaccgagccc cccaccatga
      481 aggcggcgtt gacgacgttg ttggcggcga tgacccgcgc acgatggctg ggctcgctgc
      541 ggacctgcaa cagggtgttg ggcggcacga tgtagaagcc gctggcgatg gccagcatga
      601 ggaggtcgat cagcacccgc caggcgacgg gacggctaag gaacgcgggg atgttctgga
      661 gcggctcgcc gccggccgag atatcgcggg tcgcgagata gagatcgagg atgaaggccg
      721 tcatgacgat cgccgccacc gggacatagc gcatgctgat ctgacccttg agcaggcgcg
      781 tgcacagcat ggagccgacg ccgattccga tggagaaggc ggtcagaaac agggtgacca
      841 catgatcatc gctggccagc acatccttgg cgaaggcagg aaactgggcc aggaaggtgg
      901 cgccgatgag ccagaaccag gagaccgcga ggatggggag catgatcggc cagcgcgacc
      961 cggcgtagcg gatcaactcc caggtatcgg tgacgatatt ggcgccgact tcgagtcctg
     1021 gcgcggcagc cggtgcgcgg gggatgtaga gactggcgat cagcccgccc accgccaccg
     1081 ccagcgccag caggctgacg gtgaggaggc cgtaatcggt caggatcagc acgccacctg
     1141 cgatggtccc cagcaggatg gcgaggaagg tccctgcctc gatcatggca ttgccggaga
     1201 gaagctcgct ggtttgcaga tgcaccggca ggatgccgta tttcagcggc ccgaagaaag
     1261 tcgagtgcgt ccccatcagg aacagcaccg tcatcagcag cgtgatgctg ccggtgaaga
     1321 aggcgacggt cgccaccccc atgatcagga tctcggtcgc cttgatgata tggatgatct
     1381 tctgcttctc gaacttgtcc gcgagacggc ccgccatggc ggagaacagg aaataaggca
     1441 ggatgaagac gccggtggcg atggtcacca gcatctgccc atggccggcg gcctggacga
     1501 gattgaaggt gatgagaatg atgagggcgt tcttgaacag attgtcgttg aaggcgccca
     1561 ggaactgggt
//
LOCUS       DASQCV010000441         2511 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3245770, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000441 DASQCV010000000
VERSION     DASQCV010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3245770"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..990
                     /locus_tag="VEQ16_06675"
     CDS             <1..990
                     /locus_tag="VEQ16_06675"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HYP63552.1"
                     /translation="NHSQKFRGRMKKILAAAGWLILFVAVGCLVMAAVSLGLLRHGVP
                     PWVLLRLAALGLVPGGLAWVIALVFAALPGARRAPGAAQSFGLAQGLWAIGGSGLMLA
                     CGAFLPYAAAVYLEMLRRLANLPSHMPDQHDIPLLLASLLASELLTALWLVWYVRRQG
                     PARLQDGSAAGIAWRPAPPRAYGLAALSALAVLLLVAGEAAMLPPDSSKLQDLELAQL
                     LQGPPAIALLAAAVIIVMAPIVEELLFRGLAFAGIAARLGPGWAVALTTIIFTAVHAP
                     EKILYPPGFVDVAAVALLSCWLRLRYRSIRPGMVMHFLYNGSMLVVPLMAGGH"
     gene            1192..1428
                     /locus_tag="VEQ16_06680"
     CDS             1192..1428
                     /locus_tag="VEQ16_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0043953 - protein transport by the Tat
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HYP63553.1"
                     /translation="MGGLSIWHWLVVLAAITLIFGVGRIGNVMGEVGKGIKNFKQAMN
                     EDEPKKTEDASMSATTGSLNAPAPEQQKTTINQG"
     gene            1432..2025
                     /locus_tag="VEQ16_06685"
     CDS             1432..2025
                     /locus_tag="VEQ16_06685"
                     /EC_number="4.2.1.109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylthioribulose 1-phosphate dehydratase"
                     /protein_id="HYP63554.1"
                     /translation="MVPQGLAAQLAEAGRRMDARNWVPGSAGNLSARIDDQRIAITRS
                     GVHKGRLTEADIIAVDYAGQALVEEQKPSAETLLHCQLYRLFPPVGAVLHGHSVAATV
                     LSMRGAITFSNYELVKAFGFTTHELDVVLPVYENDQDMVRLAAYIEPLLENNPPIGYV
                     IAGHGVYAWGTNVEHAYWRLEALEFLLQCELERRRLP"
     gene            2022..>2511
                     /locus_tag="VEQ16_06690"
     CDS             2022..>2511
                     /locus_tag="VEQ16_06690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acireductone dioxygenase"
                     /protein_id="HYP63555.1"
                     /translation="MTKLTVYADDVPGVPVFESENPGRIVPVLREINVGFERWDAPVH
                     LAADADNGTILDAFRPFLDALMGATGAGSADVVKLTPEHPQAAALREKFLAEHTHTEP
                     EIRFFVAGSGHFVLHENGKVFDILCEKDDLIQVPAGIKHWFDAGAAPSFTALRVFTDT
                     SGW"
BASE COUNT          426 a          793 c          801 g          491 t
ORIGIN      
        1 aaccattctc aaaaatttcg aggccgtatg aaaaaaattc tggctgcagc aggctggctc
       61 atccttttcg tggctgtggg atgcctcgtc atggccgcgg tctcgctggg cctattacgc
      121 catggtgtac cgccctgggt gctgctgcgc ctggccgcgc tgggattggt gccaggaggg
      181 ctggcctggg tcatcgccct ggtgttcgcc gccctgcccg gcgccagacg cgcgcccggc
      241 gccgcacaaa gcttcggctt ggcccagggt ctctgggcca ttggcgggtc cgggctgatg
      301 ctggcctgcg gtgccttcct gccttatgcg gcagcggtct atctggagat gctgcggcgg
      361 ctggcgaatc tgccgtcaca tatgccggac cagcatgaca tccccctgct cctcgcctca
      421 ctgctggcca gcgagctgct cacggcgctc tggctcgtct ggtatgtgcg ccgccagggc
      481 ccggcgcggc tacaggatgg cagcgccgcc ggcatagcct ggcgccccgc tccaccccgt
      541 gcctatgggc tggccgccct cagcgcactc gcggtgctgc tgctggtggc gggggaggcc
      601 gctatgctcc cgcccgattc cagcaagctg caggatctcg aactggcgca gctgctgcaa
      661 ggcccgccag cgatcgccct gctcgctgcc gctgtcatca tcgtcatggc gcccatcgtg
      721 gaagaattgc tctttcgcgg cctggccttc gctggcatcg cagcacggct ggggccgggc
      781 tgggcggtgg cgctcaccac catcattttc accgccgtgc atgcgccgga aaaaattctc
      841 tacccgcccg gcttcgtcga tgtcgccgcc gtcgccctgc tctcctgctg gctgcggctg
      901 cgctaccgct ccatccggcc gggcatggtg atgcatttcc tctataatgg cagcatgctg
      961 gtggtaccgc ttatggcggg cggccattaa gggtaaaact gaaaacggcc tgcacgccat
     1021 gaaaaatgac tctcgggtga ttatatggcc tgatatcaga ggcgtgatgt ccgctctcac
     1081 ggttcccgca accatggaag cgcgcccgcc agcaaccggt ctccgccctc atttggcagg
     1141 gatcgaaaac ttgcgtaaac agaccctcaa tatccggttg gagacgagat tatgggtgga
     1201 ttgagcattt ggcactggct ggtggtgctg gccgcgatca cgctgatttt cggcgtgggg
     1261 cgcattggca atgtgatggg cgaagtcggc aagggcatca agaacttcaa gcaggccatg
     1321 aacgaggatg agccgaagaa gaccgaggat gcttcgatga gcgcgacgac gggctcgctc
     1381 aacgcgcccg cgcccgaaca gcagaaaacc acaatcaacc agggctaaag catggtcccg
     1441 cagggtttgg cggcgcagct ggccgaggcc ggccggcgca tggatgcgcg caactgggtg
     1501 cccggctcag ccggcaatct ttcggcccgc atcgacgatc agcgcatcgc catcacccgt
     1561 agcggggtgc ataagggccg gctgacggaa gccgacatca tcgccgtgga ctatgcaggc
     1621 caggcgctgg tggaggagca aaaacccagc gccgagacac tgctgcattg ccagctctac
     1681 cggctctttc cgcccgtcgg cgcggtgctg cacggccatt ccgtagccgc cacggtgctg
     1741 tccatgcgcg gcgccatcac tttctccaat tacgagctgg taaaagcctt cggcttcacc
     1801 acccatgagc tggacgtagt gctgccggtc tatgagaatg accaggacat ggtccggctc
     1861 gcggcttata tcgagccctt gctggagaat aacccgccga tcggctatgt catcgccggg
     1921 catggggtct atgcctgggg caccaatgtg gaacatgctt attggcgcct ggaggctttg
     1981 gaatttttac tccaatgcga gctggaacgg agacggctgc catgacgaaa ttgacggtct
     2041 atgcggatga cgtccccggc gtcccggtct tcgagagtga gaatcccggc aggatcgtgc
     2101 ctgtgctgcg cgagatcaat gtcgggttcg agcgctggga cgcgcccgtg catctcgccg
     2161 ccgacgcgga taacggcacg attctcgacg ccttccgccc ctttctcgac gcgctgatgg
     2221 gcgcaaccgg cgctggctcc gccgatgtgg tgaagctcac gccggagcat ccgcaggcgg
     2281 cggcgttgcg cgaaaaattc ctcgccgagc acacccatac ggagccggaa atccgtttct
     2341 tcgtcgccgg ctcgggccat ttcgtgctgc atgagaacgg caaggtgttc gatattcttt
     2401 gcgagaagga tgatctcatc caggtgccgg ccgggataaa acactggttc gatgccgggg
     2461 cggcgccgag cttcaccgct ttgcgcgtgt tcaccgacac gtccggctgg g
//
LOCUS       DASQCV010000442         3467 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2417406, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000442 DASQCV010000000
VERSION     DASQCV010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3467
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2417406"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..658
                     /locus_tag="VEQ16_06695"
     CDS             <1..658
                     /locus_tag="VEQ16_06695"
                     /inference="COORDINATES: protein motif:HMM:NF015552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dicarboxylate transporter/tellurite-resistance
                     protein TehA"
                     /protein_id="HYP63556.1"
                     /translation="ALLFGICALYTVVFAVWRTGQLWMGGRDPGATTAVLYLPAVAGS
                     FVSAAIISALGYADWGQYAFGAGLFTWLAIESVLLHRLYTASALPLPLRPTLGIQLAP
                     PTVGLAAYLSVTSGPPGLFAHMLLGYGLLQGLLLLRLLPWICQQSFTPAYWAFSFGVT
                     ALAAGPLRMVERGDVGPAADLAWPLFIAANLIVLVLVLGTLRLMVRGQFLPRPVPAGP
                     "
     gene            complement(738..1439)
                     /locus_tag="VEQ16_06700"
     CDS             complement(738..1439)
                     /locus_tag="VEQ16_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012223630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HYP63557.1"
                     /translation="MIDVRPFETLGHADHGWLDAHHHFSFASYYDPARTHWGSLRVWN
                     DDSIAPRTGFPTHPHRDMEIITYVRTGAITHQDSLGNKGRTEAGDVQVMSAGTGIAHS
                     EYNLEGETTTLFQIWILPSATGKAPSWGAQPFPKGERSGRFVALASGFADDEGALPIR
                     TDARVLGATLRKGESVEYPLGKERFGYLVPAKGKVEIDGVAVNARDGAALAELESFRV
                     TALEDAELVLVDSGA"
     gene            1549..2466
                     /locus_tag="VEQ16_06705"
     CDS             1549..2466
                     /locus_tag="VEQ16_06705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014104352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYP63558.1"
                     /translation="MTRLPDLEAWAIFAKVAETGSFAQAASALGLSNPTVSKAITRLE
                     QHLGTALLHRTSRRLSLTEAGRAALPRAARILAEGEAAEAEAASQSVTPRGLIRFAAP
                     MSFGVRHLGPVLPGFLDTYPEVDIDLQLSDALVDLIEGGFDLALRIAVLEDSSLRGRR
                     LCAVRRPVVAAPAYLAAHGRPGHPRELVGHDALIYTGIASPNLWKFSHPEQGEFSVPV
                     QGRLRANNADLFEAALLAGQGFAVQPDFMVWQALADGRLEEILPGWHMPPIALNLITP
                     PSALRPARVTALMDYLATHFSAAPWSHRP"
     gene            2586..>3467
                     /locus_tag="VEQ16_06710"
     CDS             2586..>3467
                     /locus_tag="VEQ16_06710"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HYP63559.1"
                     /translation="MPDDHPSLVNRKDGARAAQRARSAPFPEQAKSLSAIDGWRTLAI
                     LAWQWGIIIAVIALAMHAGHGPLHWLAALAAIIIVASRQQALAVLMHEGAHYRLFANR
                     ALNDIVSDLFCSLPLFLVTSRYRTTHLQHHLEPLGANDPDWTIMQANPREWSWPKTAR
                     ESRAVLLRDAVGYGFLVFAQQWKAWLPQTNHFGSSASPEPFSTGTRARIYLFFAVVLG
                     LAFGLGLWREILLYWLLPLATIGQVFFRIRTISEHMGCGSGSGMGYTRNVEGTLAERL
                     LISPLNVSHHLTHHLFPG"
BASE COUNT          521 a         1205 c         1033 g          708 t
ORIGIN      
        1 ggccctgctt ttcggcattt gcgcactcta taccgtggtt tttgccgtct ggcgcacggg
       61 gcagctatgg atgggcgggc gcgatccggg cgccaccacg gcggtgctct atctgccggc
      121 cgtggcgggg tctttcgtca gcgcggccat tatcagcgcg ctcggctacg cggattgggg
      181 gcaatatgcg ttcggcgccg ggctgttcac atggctcgcc atcgagtccg tgctactcca
      241 ccggctctat accgcgtccg ctttgccgct gcccttgcgc ccgaccctcg gcatccagct
      301 cgccccgccc actgtggggc tggcagctta tctgagtgtt acctccgggc cgccgggttt
      361 gtttgcgcat atgttgctcg gctacgggct gctgcagggg ctgttgctcc tgcggcttct
      421 gccctggatc tgccagcaga gtttcacgcc cgcctattgg gcgttcagct tcggtgtcac
      481 cgcgcttgcg gcggggccgc tgcgtatggt ggagcgcggc gatgtggggc ccgcggccga
      541 tctcgcctgg ccgcttttca ttgcggccaa tctcattgtg ctggtgctgg ttctcgggac
      601 gttgcggctg atggtaaggg ggcagtttct accccggcct gtacctgccg ggccgtgacg
      661 cgaaccagtt gttctccgtc tgccacccca ttcgcacgaa atggcagacg caactcagac
      721 tggtacaaaa gcagggctta tgccccgcta tccaccagca ccagctcggc atcctccagc
      781 gccgtcacac ggaagctttc cagctcggcc agggccgcgc cgtcccgcgc attcacagcc
      841 acaccgtcaa tctccacctt gcctttcgcc ggcacgagat agccgaaccg ctccttgccc
      901 agcggatatt ccacgctctc gcctttccgc agcgtcgcgc ccagcacgcg cgcatcggtg
      961 cggatcggca gtgccccctc gtcatcagca aagcccgagg ccagcgccac gaacctgccg
     1021 gagcgctcgc ccttggggaa aggctgcgcc ccccagctcg gcgccttgcc ggtggccgag
     1081 ggcaggatcc agatctggaa cagcgtggtc gtctcgcctt ccagattata ttcgctatgc
     1141 gcgatgccgg tgccggccga catcacctgc acatcccctg cctcggtgcg gcccttattg
     1201 ccaaggctgt cctggtgggt gatggcgccc gtgcgcacat aggtgatgat ctccatgtcg
     1261 cggtgcggat gggtcgggaa gccggtgcgc ggggcgatgc tgtcgtcatt ccacacgcgc
     1321 aggctacccc aatgggtgcg ggccgggtca taatagctgg cgaaggaaaa atgatggtgc
     1381 gcatccagcc agccatggtc ggcatggccg agtgtctcga agggtctcac gtcaatcatg
     1441 ctttgctcct ctcgcggatt tcagttggtc tccgttgagc gctgagataa gccagggcag
     1501 aaccgtttaa aacagaaatg atggaaaacc accgatgcca gaaattacat gacgcggctg
     1561 cccgacctcg aagcctgggc catttttgcc aaggtggcgg agacgggctc ctttgcccag
     1621 gccgcttccg cgctcggcct gtccaacccc accgtctcca aggccatcac aaggctggag
     1681 cagcatctcg gcaccgcgct gctgcaccgc acctcgcgcc gcctctccct caccgaggcc
     1741 gggcgtgccg cattgccccg cgccgcccgc atcctggccg agggcgaggc ggccgaggcc
     1801 gaggccgcca gccagtccgt cacgccgcgc gggctcatcc gcttcgccgc acccatgtcc
     1861 ttcggcgtgc gccatctcgg ccccgtgctg ccaggtttcc tggacactta tcccgaggtg
     1921 gacatcgatc tgcagctcag cgatgccttg gttgacctca tcgaaggcgg gttcgacctt
     1981 gcactgcgca tcgccgtgct cgaggattcc tcgttgcgcg gccgccgcct ctgcgccgtg
     2041 cgccgcccgg tggtggcagc ccccgcctat ctcgccgcac atggacggcc gggccacccg
     2101 cgcgagctcg tgggccatga cgcgctcatc tataccggca ttgcctcacc caatctttgg
     2161 aaattctctc accccgagca gggcgaattc tccgtccccg tccagggcag gctgcgcgcg
     2221 aataatgccg atctgttcga ggctgccctg ctcgctggcc agggttttgc ggtgcagccg
     2281 gacttcatgg tctggcaggc tttggccgat ggacggcttg aggaaatatt gcccggctgg
     2341 cacatgccgc ccatcgccct caacctcatc accccgccca gcgccttgcg cccggcgcgg
     2401 gtgacggcgc tcatggatta tctcgccacc catttctccg ccgccccctg gtcgcaccgc
     2461 ccctgaaact taaccggcaa aatattcacc ttaacgttgt cctggcccgg aatgattgtt
     2521 agcgtttaat ccatgggttg cggacccgcc gcgcccgaac caccctaagt cagcagggaa
     2581 gcgccatgcc ggacgatcac ccgtctctcg ttaaccgtaa ggacggcgcc agggccgcgc
     2641 agcgcgcccg cagcgctccg tttcccgagc aggcgaaatc cctgagcgcc atagacgggt
     2701 ggcgcacgct ggccattctc gcttggcaat ggggcatcat catcgccgtc atcgcgctcg
     2761 ccatgcatgc cgggcacggc ccgttgcact ggcttgcggc acttgccgcc atcatcatcg
     2821 ttgccagccg gcagcaggct ttggcggtgc tgatgcatga aggcgcgcat taccggctct
     2881 tcgccaaccg tgccctcaac gatattgtga gcgatctgtt ctgctccctg ccgctttttc
     2941 ttgtcacttc acgctaccgc accacccatc tccagcatca tctggagccg ctcggcgcga
     3001 atgacccgga ctggacgatc atgcaggcca acccgcgtga atggtcctgg cccaagaccg
     3061 cgcgtgaaag ccgtgccgtg ctgctgcgcg atgccgtggg ttacgggttc ctcgtttttg
     3121 cccagcaatg gaaggcctgg ctgccgcaga ccaatcattt cggcagctcc gcctcgcccg
     3181 agcctttttc caccggcaca cgcgcgcgca tctatctctt tttcgccgtg gtgctgggtt
     3241 tggcatttgg tctgggattg tggcgcgaga tcctgctcta ttggctgctg cctctggcca
     3301 ccatcggcca ggtatttttc cgcatccgca ccatctcgga acatatgggc tgcggctccg
     3361 gcagcggcat gggctatacc cgcaatgtcg agggcacgct ggccgagcgg ctgctcatca
     3421 gcccgctcaa tgttagccat catctcacgc atcatttgtt tccaggc
//
LOCUS       DASQCV010000443         2482 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2417683, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000443 DASQCV010000000
VERSION     DASQCV010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2417683"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..965)
                     /locus_tag="VEQ16_06715"
     CDS             complement(<1..965)
                     /locus_tag="VEQ16_06715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HYP63560.1"
                     /translation="MRQPASPGQRSSVSSKLLIATGTTLALIFVAVFLVTLWIVRNSV
                     YHSVDTEANGNAQSIASQLGTNFTEQMSVAQTMGRSIEASLQTDPGNLQAVMEIMHRA
                     LLSFPDVYATWMQAKPGGIDGQTSAPTAGINKQGNFGPYWTRTSIGDAPTMTTFDTDY
                     QASWYAPSAQSGKVTITDPYLYDTGYIIASFCIPITVNGTFQGVAGIDMRMDWLTAML
                     AQMHPFGTGEVRLLSQNGNWITNSDSAKLAKPYDGPGADLLKTALATGQMQVLPHPSA
                     DTAELIFYPFALPQNITNWVLVLRVPQSAISGPVWSAFWMLLAGSL"
     gene            complement(1135..2472)
                     /gene="accC"
                     /locus_tag="VEQ16_06720"
     CDS             complement(1135..2472)
                     /gene="accC"
                     /locus_tag="VEQ16_06720"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003616993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HYP63561.1"
                     /translation="MLPSVLIANRGEIACRIIRTARRLGIRTIAVYSTADAQAPHVRL
                     ADEAHEIGAAPASESYLRAERIIEVARKADAAAIHPGYGFLSENAAFAEMVEAHNLVF
                     IGPTAQHIRMMGDKITAKTTMEELKVPLVPGSPGELASLDEARAVAERIKYPVLIKAA
                     AGGGGRGMKVARSAGELDAAWREARAEAAAAFGNNAVYMEKYLDKPRHIELQVLADNH
                     GAVVHIGERDCSLQRRHQKVLEEAGSPVITPAQRDELGKTVTTALKKIGYRNAGTLEF
                     LYQDGQFAFIEMNTRLQVEHPVSEAISGIDLVREQIRIAAGEHLGYTQGDVEFSGHAI
                     ECRITAEDPATFAPSPGRVDVFHPPGGLGVRVDSALYAGYRVPPHYDSLIAKLVTHGR
                     TRDEAIARMKRALREFVITGVKTTIPLHQRILEAPDFVSGDYTIHWLERFVAS"
BASE COUNT          422 a          742 c          843 g          475 t
ORIGIN      
        1 aggcttcctg ccagcagcat ccagaatgcg ctccagactg gccccgaaat ggcgctctgt
       61 ggcacgcgca gcaccagcac ccagttggtg atgttctgcg gcagggcgaa gggatagaag
      121 atcagctcgg ccgtgtccgc cgaggggtgc ggcagaacct gcatctgccc cgtggccaaa
      181 gctgttttca gcaggtcggc gcccggccca tcatagggct tggcgagctt ggcgctgtcg
      241 ctgttggtaa tccagttgcc gttctgcgag agcagcctca cctcgccagt gccgaaggga
      301 tgcatctgcg cgagcatggc ggtgagccaa tccatgcgca tatcgatgcc cgccacgccc
      361 tggaacgttc cgttgacggt gatggggatg cagaaggagg cgatgatata gccggtatcg
      421 taaagataag gatcggtgat ggtaaccttg ccgctctgcg ccgagggagc ataccaggag
      481 gcttggtaat ccgtgtcaaa ggtagtcatc gttggcgcat cgccgatcga tgtacgggtc
      541 cagtatgggc cgaaattgcc ctgcttgttg atgccggctg tgggtgcgct ggtctggccg
      601 tctatgccgc cgggcttggc ctgcatccag gtggcgtaca catcgggaaa gctcagcagc
      661 gcccggtgca tgatctccat caccgcctgg aggttacccg gatcggtctg cagcgaagcc
      721 tcgatggagc ggcccatcgt ctgcgccacg ctcatctgtt cggtgaagtt ggtaccgagc
      781 tggctggcga tggattgcgc gttgccattg gcctcggtgt cgacggaatg atagaccgag
      841 ttgcgcacga tccagagtgt gaccaggaac acggccacga agatcagcgc gagcgtggtg
      901 cccgttgcga tcagcaattt gctggaaacg gagctgcgct ggcctgggga ggcgggttgt
      961 ctcataggga tggcaccttc aagctggatg aggatgcggt ccaccctaag ggagcattcg
     1021 ctaaagccgt gtaaatatcg cgggttccag gcgcggcgct tcggcggccc cggtgtgctt
     1081 gggcgtcgcg atggtggctt ttatccggtc agggggcaaa gccccctgtc tttcttaaga
     1141 ggccacgaac cgttcgagcc agtggatcgt ataatcgccc gacacgaaat ccggggcctc
     1201 aagaatccgc tgatgcaacg ggatggtcgt cttcacaccc gtaatcacga actcccgcaa
     1261 cgcccgcttc atgcgcgcaa tcgcttcgtc ccgcgtgcgc ccatgcgtta ccagcttggc
     1321 gatcaggctg tcataatgcg gcggcacgcg gtagccggca tagagcgcgc tgtccacgcg
     1381 cacgcccaag cccccgggcg ggtggaaaac gtccacgcgg ccgggtgagg gggcgaaggt
     1441 cgcagggtct tcggcggtga tgcggcattc gatggcgtgg ccggagaatt cgacatcacc
     1501 ttgcgtgtag ccaagatgct cgccggcggc gatgcggatc tgctcgcgca cgaggtcgat
     1561 gccggagatg gcttcggaga cgggatgttc cacctgcagg cgggtattca tctcgatgaa
     1621 ggcgaactgc ccgtcctggt agaggaattc cagcgtgccg gcattgcggt agccgatttt
     1681 cttcagcgcg gtcgtcaccg tcttgcccag ctcgtcgcgc tgcgccgggg tgatgaccgg
     1741 cgagccggcc tcttcgagca ccttctggtg gcggcgctgg agggaacagt cacgctcgcc
     1801 gatatgcacc accgcaccat ggttatccgc cagcacctgc agctcgatat ggcgcggctt
     1861 gtcgagatat ttttccatgt agacggcgtt gttgccgaaa gcggcggcgg cctcggcgcg
     1921 tgcctcgcgc caggcggcgt ccagctcgcc ggcggaacgt gccaccttca tgccgcgccc
     1981 gccaccgccg gcggcggcct tgatgagcac gggatatttg atgcgctcgg cgaccgcgcg
     2041 ggcctcgtcc agcgaggcca gctcacccgg gctacccggc accagcggca ccttcagctc
     2101 ttccatggtg gtcttggcgg tgatcttgtc gcccatcatg cggatatgct gcgcggtggg
     2161 gccgatgaag acgagattat gcgcctccac catttccgcg aaggcggcat tctcggagag
     2221 gaagccgtag cctggatgga ttgcggcggc gtcggccttg cgcgcgacct cgatgatccg
     2281 ctcagcccgg agataacttt ccgaggcagg cgccgcgccg atctcgtggg cctcgtcggc
     2341 gagccgcacg tgcggggcct gtgcgtcggc cgtggaatag accgcgatgg tgcggatgcc
     2401 gagccgcctc gcagtgcgga tgatacggca ggcgatctcg ccgcgattgg cgatgaggac
     2461 cgagggaagc atgggtctct tc
//
LOCUS       DASQCV010000444         3313 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_427934, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000444 DASQCV010000000
VERSION     DASQCV010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3313
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_427934"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..>3313
                     /locus_tag="VEQ16_06725"
     CDS             16..>3313
                     /locus_tag="VEQ16_06725"
                     /inference="COORDINATES: protein motif:HMM:NF012873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="condensation domain-containing protein"
                     /protein_id="HYP63562.1"
                     /translation="MSAVEGGGAARTPQEELLCGLFADVLGVAGVGINDNFFELGGDS
                     IISIQLVSRARQAGLLITARAVFQHQTVAALAATAAVAAEKTSSIADIATGALPLTPI
                     MHWLLERGGLVDRFSQTMLLQVPSGVQEKHLIGALQVVLDHHDALRLRLVAPGDGGEV
                     SLEVLPAGKIAGGMCLRRIDVCGLAQDAWDACIAQQAQAARARLVPAAGVMTQAVWFD
                     AGAQNPGRLLLTIHHLAVDGVSWRILVPDLVAAWAAIARGDAAALGSRGTSFRGWAYR
                     LAAEAKAGPRVAELGFWTSMLQGRSLSLVDGTLDHAGDNGGDVGQLTLTLPMPLTAAL
                     LTRVPSAFHANINDVLLTGLVVAVTHWCHVRGREGGTAVLIDVEGHGREEIFADVDLS
                     RTVGWFTSLFPVRLDPGAVDIAEALAGGPALGRALKIIKQQLHALPEHGLGYGLLRYL
                     NAQTAAQLAGLAAPQIGFNYLGRFPAGGSVDWVAAAERVPLGGSDAALGLFHCIDLNV
                     VTEDAADGPVLRATWSWAGALLLEREVRNLAQNWFAALAALVRHVEQPGAGGRSPCDL
                     PLLALSQAEIERLEGKYPQIEDVLPLSALQEGLLFHALYDARAPDFYTVQLVLELEGS
                     LDAIILQKAAQAVVERHASLRAGFEHAQLSQPVQIIAAGVRPRWCLLDLSVLDEMRRA
                     QRLGEILGQDRCERFDLASAPLLRFTLIRLGREEHRLVLTSHHILLDGWSAPVLVQEL
                     LTVYAHQGNAAVLPRVPRYRDYLAWVAAQDRAAAISAWVEALGDLPEGSLLAPRAQAG
                     APHVPQQIILTLDEPLTTTLNEQVRRHGVTLSTLIQTAWAILLGRLLGRDDVVFGVTV
                     AGRPPEIAGIERMVGLFINTLPLRIKLVAAKPLHDLLREVQDNQSKLIAHQHVGLAEI
                     QNAVGAGELFDTLVVFENYPVDESARAAAEGGGLRLAGVSGQDATHYPLGLMVIPGER
                     LRLRFDYRPDLFDRASVEALAWRFVRVLEAAVAAPERALSSVEILSGEERASILRGWN
                     ASAHAVVAATLPELFAGQAARNPDAVAVVFEDGRLSYGELERQANRLAHHLRGLGVGP
                     ETVVGLCLARS"
BASE COUNT          466 a          872 c         1278 g          697 t
ORIGIN      
        1 ctgcctgcgc cggctgtgag cgcggttgag gggggcgggg ctgcgcgcac gccgcaggag
       61 gagctgctgt gcgggctgtt tgcggacgtg ctgggggtgg ctggggtcgg gatcaacgac
      121 aatttctttg agcttggggg cgacagtatc atatcgatcc agctggtgag ccgggcgcgc
      181 caggcgggac ttctgattac agcgcgcgca gtgttccagc atcagacggt ggcggcgctt
      241 gctgcgactg ctgcggttgc ggcggagaag acctcgagca ttgctgacat tgcgactggt
      301 gcattgccgc tcacgccgat catgcattgg ttgctggagc gcggcgggct ggtcgatcgg
      361 ttcagccaga caatgctgct gcaggtccca tcgggagtgc aggagaagca tctgattggg
      421 gcgctgcaag tcgtactcga ccatcatgac gcattgcggc tgcggcttgt tgctcctggg
      481 gacggtggcg aggtctcgct cgaggttttg ccggcgggca agattgctgg tgggatgtgc
      541 ctgcggcgca tcgatgtctg cggcctggca caggatgcgt gggatgcgtg tattgcgcag
      601 caggcgcagg cggcgcgggc aaggcttgtg ccggctgcgg gcgtgatgac gcaggcggtg
      661 tggttcgatg cgggggcgca gaatcctgga cggctgttgc tgaccatcca tcatctggca
      721 gtggatggtg tgtcgtggcg cattctggtg ccggatcttg ttgctgcatg ggcggcgatt
      781 gcgcgcgggg acgccgccgc acttggctcg cgggggacat cgtttcgtgg ctgggcgtat
      841 cggcttgccg cggaggcgaa agctggaccg cgggttgcgg agcttggctt ctggacctcg
      901 atgttgcagg ggcgctcgct ttcattggtt gatggaacgc tcgatcatgc aggcgacaac
      961 ggcggggacg tggggcagct tacgctgacg ttgccgatgc cgctgaccgc ggcgttgctg
     1021 acgcgcgtgc cgagcgcgtt tcacgccaat atcaatgatg ttctgctgac cggcctggtg
     1081 gtggcggtta cgcattggtg ccatgtgcgc gggcgtgagg gtggcactgc cgtgctgatc
     1141 gacgtggagg gtcatggccg ggaggagatt tttgcggatg tggacctctc gcgcacagtg
     1201 ggctggttca caagcctgtt tccggtgcgg ctcgaccccg gtgcggttga tattgcagag
     1261 gcgctggcgg gcggaccggc gcttgggcgg gcgctcaaga tcatcaagca gcagctgcac
     1321 gcgctgcccg agcacggcct tggctatggg ctgctgcggt atctcaatgc gcagacagcc
     1381 gcgcaacttg ccggccttgc agcgccacag atcgggttca attaccttgg tcgctttccg
     1441 gcgggcggat cggtggattg ggttgctgcg gcggagcgtg tgccgcttgg gggcagcgat
     1501 gccgcgcttg ggcttttcca ttgcattgac ctcaatgtgg tgacggagga tgcggcggat
     1561 ggccccgttc tgcgggcgac gtggtcgtgg gcaggggcgt tgctcttgga gcgggaggtg
     1621 cgcaatctgg cgcagaactg gtttgcggcc ctggcggcgc tggtacgcca tgtcgagcag
     1681 cccggagcgg gtggccgcag cccttgcgat ttgccgttgc tggcgctttc gcaagccgag
     1741 atcgagcggc tggagggcaa gtacccgcag atcgaggacg tgcttccgct ctctgcgctg
     1801 caggaggggc tgctgtttca tgcgctgtat gacgcgcgcg cgccggattt ttatacggtg
     1861 caattggtgc tggagctgga gggatcgctt gacgctatca tcctgcaaaa ggcggcgcag
     1921 gcggttgtcg agcgccatgc gagcctgcgc gcgggctttg agcatgcgca gctgtcgcaa
     1981 ccggtgcaga tcattgctgc gggagtgcgg ccgcggtggt gcctgctcga tctgtcagtg
     2041 cttgatgaga tgcgacgtgc acagcgtctg ggtgagatcc tgggccagga tcgctgcgag
     2101 cgtttcgatc ttgcctcagc gccgctgctg cgctttacgc tgatccggct tggccgtgag
     2161 gagcatcggc tggtactcac cagccatcac attcttctgg atggctggtc ggctcctgtc
     2221 ctggtgcagg agctgctgac ggtttatgcg caccagggca atgctgcggt ccttccgcgg
     2281 gtgccgcgct atcgtgatta tctcgcctgg gtggcagcgc aggatcgtgc ggccgccatc
     2341 tcggcctggg tggaggctct gggcgacctg cctgagggta gccttctggc gccgcgcgcg
     2401 caggcgggtg ccccgcatgt gccgcaacag atcatattga cgctggatga gccgctgacg
     2461 acgacgctca atgagcaggt tcggcgccat ggcgttaccc tcagcacgtt aatccagacg
     2521 gcgtgggcca ttctgctggg acggctgctt ggtcgcgacg atgtggtgtt cggggtcacg
     2581 gtggcgggac gtccgccgga gatcgcgggc atcgaacgaa tggtggggtt gttcatcaac
     2641 acgctgccgc tgcggataaa gctggtggcg gcaaaaccgc tgcacgatct gctcagggag
     2701 gtacaggaca atcagtcgaa attgattgct caccagcatg tcgggcttgc ggagattcaa
     2761 aatgcggttg gagcaggtga gctgttcgac acgctggtgg tgtttgagaa ctatccggtg
     2821 gacgagagcg ctcgcgcagc agcggaaggt ggtgggctgc ggcttgcggg ggtgagcggg
     2881 caggatgcga cgcactaccc gttgggtctg atggtgatcc ccggagaacg gctgcggctg
     2941 cgcttcgact atcggcccga cctgtttgat cgtgcgagcg ttgaggcatt ggcgtggcgg
     3001 tttgtgcgtg tgctggaagc ggcggttgcg gctccggagc gagcgctgtc gagcgtggag
     3061 atcctctccg gggaggagcg tgcgagcatc ctgcggggtt ggaatgcgag tgcacatgcg
     3121 gttgtggctg caacgctgcc ggagctgttt gcggggcagg cggcgcgcaa cccggatgcg
     3181 gttgcggtgg tgttcgagga tgggcggctg agctatggcg agcttgagcg gcaggcgaac
     3241 cggctggcgc atcatctgcg tgggctgggt gttgggccgg agacggttgt tgggctttgc
     3301 cttgcgcgct cgc
//
LOCUS       DASQCV010000445         2966 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3246746, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000445 DASQCV010000000
VERSION     DASQCV010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3246746"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VEQ16_06730"
     CDS             <1..292
                     /locus_tag="VEQ16_06730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012553003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP63563.1"
                     /translation="EARARQRHRGGTDGPWTNAEMSPDLFAIDGKAKEFLEMAATKLR
                     LSARGFTRSLRVARTIADLDGHEQIQQPHIAEALRYRHRMPKQAVLARQFQD"
     gene            complement(283..>2966)
                     /locus_tag="VEQ16_06735"
     CDS             complement(283..>2966)
                     /locus_tag="VEQ16_06735"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP63564.1"
                     /translation="QYGHRALSPHWLFNDALYADLYEDMTLETLELHNFCGRYDHYLR
                     TGQFEGRQGHFLFDAAYYRATALEAEAGALEQLGPYTHFLTRLGAEELAPSVYFDPVW
                     YLERHPGAKAEVLRGRFCGALHHYLTNERPGDFDPVPQFSESFYRRRHLDVAAAIEAG
                     LNRNAYEQFVQHGCFELRQPGPDVDLAYYRDMNEVVRHDLNKGEARDAFAHLRLVGLE
                     KKLAYCPPQARAALDETATREAFVARAKADLALFAHMKLDFTCAAPPVLSVLLVVFNK
                     FELTMRALASLRQNFAVAMELVVVDNGSSDETRRLDEFVRGAKIVRSARNLGFLQGAN
                     LGLRHVSAPVLLYLNNDIELGFGAVEMALRRLMAGEDIGAVGAKIIRTNGKLQEAGSI
                     LWNEGSAVGYMRDASPLAPEANFVRDVDFCSAVFLLCRTDLVKRLGGFDEGFAPAYYE
                     DVDLCVRMIGEGFRVVYDPAVTVTHLEFGSASTTEASMALMRRGRRIFLKKHEAFLQG
                     QVSPEGAQMCLARQRRKKPRVLFIEDTIPLRRLGSGFVRSNDIVRAIVAAGYEVHVFP
                     MNGAPYDVMSLYGDLPDDVEVLADRDFARFEAFLQERKGIYDVIWVARTHNLARALPV
                     LEAAKLDLKRVRLVLDTEAVTSPREAMRAKLQGEAFDMKAALAEECAVARKAGQVLAV
                     NEAEAALLRKGRIKNVSVLGTMREPSPTQAGFGTRAGLLFVGAIHQTDSPNLDALRFY
                     AEEILPELGKVFDEVPMLHVVGHVARSVDLGELGRQSQIRLHGELGDLSALYNEARLF
                     MAPPRFAAGTPYKIYEAASYGLPCVASTLLAGQLGWGEAEILAADNAVGFAEAIARLY
                     RDKALWTRLRAGALKRLEAENGRVAFYENVASVLGQS"
BASE COUNT          667 a         1135 c          676 g          488 t
ORIGIN      
        1 cgaagcccgc gcccgccagc gccatcgcgg cggcacggac ggcccctgga ccaatgccga
       61 aatgagcccg gacctcttcg ccatcgacgg caaagccaaa gagttccttg aaatggcggc
      121 aacaaaactc cgcctctccg cccgcggttt cacccgctcc ctccgcgttg cccgcaccat
      181 cgcggatctc gacggccatg agcagatcca gcaaccccat atcgccgaag ccctgcgtta
      241 ccgccaccgc atgcccaaac aggctgtgct cgcccgccag tttcaggatt gacccagaac
      301 ggacgccaca ttttcgtaaa acgcgacacg cccattctca gcctcaagcc gcttcaacgc
      361 ccccgcccgc aaccgcgtcc atagcgcctt gtcgcgataa agacgcgcaa tcgcctccgc
      421 aaatcccacc gcattatccg ccgccaatat ctcggcctcc ccccagccca actgcccggc
      481 cagcagcgtg cttgccacgc aaggcaaacc ataagaggcc gcctcataaa tcttgtacgg
      541 cgtccccgcc gcaaaacgcg gcggcgccat aaacaaccgc gcctcattat aaagcgccga
      601 caaatccccc agttcgccat gcagcctgat ctggctctgc cgtcccaact cccccaaatc
      661 gacagaccgc gccacatgcc ccaccacatg cagcatcggc acctcgtcaa aaaccttgcc
      721 taattcgggc agaatctcct ccgcataaaa ccgcagcgca tcgagattcg gactatccgt
      781 ctgatgaatc gcccccacga acagcagccc cgcccgcgtg ccaaatccag cctgtgtggg
      841 cgacggctcg cgcatcgtcc ccagtaccga aacatttttg atccgcccct tgcgcagcaa
      901 agccgcctct gcctcgttca ccgccagcac ctggcccgct ttccgtgcca ccgcgcattc
      961 ctccgccagc gccgccttca tatcgaacgc ctcgccctgc agcttcgccc gcatcgcctc
     1021 gcgcgggctt gtcaccgcct ccgtatccag caccagccgc acgcgcttca aatccagctt
     1081 cgctgcctcc agcaccggca gcgcccgcgc cagattatgc gtccgcgcca cccagatgac
     1141 gtcgtaaatc cctttgcgtt cctgcagaaa cgcctcaaac ctggcaaaat cccggtccgc
     1201 cagcacctcc acatcatcag gcagatcgcc atacaggctc atcacgtcat aaggcgcgcc
     1261 attcatcggg aaaacatgca cctcataccc cgccgcgacg atggcccgca caatgtcatt
     1321 tgagcgcaca aagcccgagc ccagccgccg caacggaatt gtatcctcga tgaacagcac
     1381 gcgcggcttt ttgcgccgct gccgcgccag gcacatctgc gccccttccg gcgaaacctg
     1441 cccttgcaaa aatgcctcat gtttttttaa gaaaattcgc cgtccacgcc gcatcagcgc
     1501 catcgaggcc tcggtggtgc tggcactgcc aaattccaga tgcgtcaccg tcaccgccgg
     1561 atcatacaca acccggaacc cctccccgat catgcgcacg cacagatcca catcctcata
     1621 ataagctggt gcaaacccct catcgaaccc gcccagcctc ttcaccaaat ccgtccggca
     1681 cagcagaaac acagcggagc agaaatccac atcgcgcaca aaattcgctt ccggcgccag
     1741 aggcgaagca tcgcgcatat acccaaccgc cgaaccctca ttccaaagaa tcgagcctgc
     1801 ttcctgcaat ttcccattgg tgcggatgat tttcgcgccg acagcgccaa tatcctcacc
     1861 cgccatcagc cgccgcagcg ccatctctac cgcgccgaaa cccaactcga tatcattatt
     1921 caagtataac aaaaccggcg cgctcacatg gcgcagcccc agattcgccc cttgtaaaaa
     1981 gccgagattg cgcgcggacc tgacgatctt cgcgcctcgc acaaactcat ccagccgcct
     2041 cgtctcgtcc gacgaaccat tatccaccac caccagctcc atcgccacgg caaaattctg
     2101 ccgcagcgag gccaaagcgc gcatggtcag ctcaaacttg ttgaacacca ccagcaacac
     2161 actcaatacc ggcggcgcgg cgcaggtaaa atccagcttc atatgcgcga acaaagccag
     2221 atccgccttc gcccgcgcca caaaagcctc acgcgtggcc gtctcatcca aagctgcgcg
     2281 cgcttgcggc ggacaataag ccagcttctt ctccagcccc accaggcgca gatgcgcaaa
     2341 cgcgtcccgc gcctcgccct tgttcaaatc atgccgcacg acctcattca tgtcgcgata
     2401 ataggccagg tccacatccg gccccggctg gcgcagctcg aaacagccat gctgcacgaa
     2461 ttgctcgtaa gcattgcggt tcagcccagc ctctatggcc gccgccacat ccaggtgccg
     2521 gcgccggtag aaactctctg agaattgtgg cacaggatcg aaatcccccg gccgctcatt
     2581 ggtgagataa tgatgcagcg ccccgcaaaa ccgcccgcgc agcacttccg ccttggcgcc
     2641 gggatggcgc tccagatacc agacaggatc gaaataaaca gacggcgcca gctcctccgc
     2701 ccccaaccgc gtcagaaaat gcgtgtaagg ccccagctgt tccaacgcgc ccgcctccgc
     2761 ctccagcgcc gtcgcccggt aataggcggc atcgaacaga aaatgcccct gccgcccctc
     2821 gaactgcccg gtgcgcagat aatgatcgta ccgcccgcaa aaattatgca gttcgagcgt
     2881 ctccagtgtc atatcctcgt atagatcggc atagagcgca tcattgaaca gccaatgcgg
     2941 cgagagggcg cgatgcccat attggc
//
LOCUS       DASQCV010000446         6127 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1921026, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000446 DASQCV010000000
VERSION     DASQCV010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6127
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1921026"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1134)
                     /locus_tag="VEQ16_06740"
     CDS             complement(<1..1134)
                     /locus_tag="VEQ16_06740"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495067.1"
                     /note="catalyzes the formation of malate from glyoxylate
                     and acetyl-CoA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase G"
                     /protein_id="HYP63565.1"
                     /translation="MPASRTALHGLSIATVLYDFVNKEALPGTLVETGPFWEGFAALL
                     QKYAVSNAALLAKRDELQGQIDAWHLARKGQPHDAAAYEAFLREIGYLRPEPASFAID
                     TALVDDEIARIAGPQLVVPVSNARYALNAANARWGSFYDALYGTDALPDDGEIARGKG
                     FNLTRAAAVIARGRAFLDAHFPLANGSHADVTAYKVHNGHLAAVLESGEVGLKDGAQF
                     AGYNGSAASPSAVLLKNHNLHAELLIDATNNIGKTDKAGVADIILESAISTIMDCEDS
                     VAAVDAEDKVAVYRNWLGLMQGTLTAPVEKAGKVFERALNPDREYTAPQGGKLTLHGR
                     SLLLVRNVGHHMLTDVITDADGNFLPETIIDAVITSLIAIHDLK"
     gene            complement(1201..3330)
                     /locus_tag="VEQ16_06745"
     CDS             complement(1201..3330)
                     /locus_tag="VEQ16_06745"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP63566.1"
                     /translation="MGQIGCVGIVKNEEAHIAEWLAWQFLIGFDTVFLLDNASTDRTA
                     AVARGLAQRFDVRVFDYPYNKADYQVRAYEQTARAVAGEYEWLAFFDTDEFLRLDGGV
                     SLKTILAARPEAAVAVSWAMFGANGHEEKPDGLVIEAFTRRAPASFEPNRHVKSIIRP
                     ALMEAVLSPHAFTMRGDYVDLAGRPVSWGPWPGHLAHDPDYAGGALNHYFTRSAAHWR
                     EKLARGYPHWTRTDSEFAAYDRNELSDDRAAKRGPEIKAMLAPREARQVLLPPRPVDD
                     EVISGLRLGIAITTLNRRTLVCAAVETIRALTQTPFELVICDDGSSDGTAEALRAMGI
                     TVIGGTNRGIAWNKNRGVYYLQHVMRCDVILLLDDDVLPAAPGWERDWLAAAWRHGHV
                     NLVHPGHRDSVAAGCGTADDPLLASVISGWAYAFSRHALARIGYLDLRFGRYGHEHSD
                     LSFRAVRAGFGGIVTEESGVRRTLFTVLDGGLANVPAASAGTPQELETNARLLAQLGS
                     EPVYRHAWRDDAEMARFLAEIAEAVPGGSRQYLPGQNEYANLQAYRSACGLASPAPAR
                     TDNISRHKRATQSSLGQWSFASTREADAAGAVNGVIDGTRKFHTDIEDQPWWQLDLGG
                     IATITEIHIHNTTDHTRERFRDFALQVSIDGEAWVELIEKRDGAVVEAPFIWNGPGTA
                     WARFVRITLLARDFLHLNQVEVFGRLP"
     gene            3703..>6127
                     /locus_tag="VEQ16_06750"
     CDS             3703..>6127
                     /locus_tag="VEQ16_06750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019015696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rne/Rng family ribonuclease"
                     /protein_id="HYP63567.1"
                     /translation="MTKRMLIDASHAEETRVVVLDGNRLEDFDVETVGRKQIKGNIYL
                     AKVIRVEPSLQAAFVEYGGNRHGFLAFGEIHPDYYQIPVADRQKLLALQAEEEEQALA
                     EEEAEEAAPEAEERPEENLAEEAQPAQALEIKPIEIISAPPPAEPEPEGEVLEESPGI
                     REALSEAPTEDTSFAPDPEAPADDALAETLPAEIEAEALTGESEDTGAAEAFAAVAAE
                     SGVAMEAGETEAGETEAGETAENGDNVTIVETVESDEAVETITPEAPPPEQIGGDGDD
                     AAEARERRMRQRFLRNYKIQDVIHRRQIMLVQVVKEERGNKGAALTSYLSLAGRFSVL
                     MPNSPTGGGVSRKITSQADRRRLKEAMAELDVPQGMGLIVRTAGANRPKPEIKRDCEY
                     LLRLWDDIRDKTMESSAPALIYEEANLIKRAIRDVYTRDVEEILVDGREGYSAARDFM
                     RMLMPSQAGRVQSWGDGQPLFSKFQVEAQLDAMLSPLVQLRSGGYIVINQTEALVAID
                     VNSGRSTRERSIEDTALRTNLEAAEEVAKQLRMRDLAGLIVIDFIDMESRKNNSAVER
                     KLKDALKHDRARIQVGSISHFGLMEMSRQRLRPSLTEASLITCPHCAGQGHIRSPESA
                     ALHILRAIEDEGAKFRAAEISVALPPEIAFYLFNHKRERLSHIESRYNMRVVFAPDAT
                     MAGTNFRIERLRAQTAQPPAPAPVRPERQLAAPQPEPEVTDEEEAETEAAEGAEAATE
                     EKGERKRRRRRRGKRREDRPAQAGAEEAAEEAQAEGDEAEEAAPAETQPAAVELDLEA
                     ELEAALSATD"
BASE COUNT         1162 a         1957 c         2008 g         1000 t
ORIGIN      
        1 cttcagatcg tgaatcgcga tgagcgaggt gatgacggca tctatgatgg tttcgggcag
       61 gaaattgccg tcggcgtcgg tgatgacatc ggtgagcatg tggtggccga cattgcggac
      121 gagcaacaga gagcgcccat gcagtgtgag cttgccgcct tgcggcgcgg tgtattcgcg
      181 gtccgggttg agggcgcgct cgaaaacctt gccggctttt tccacgggcg cggtgagcgt
      241 gccctgcatc agcccgagcc agttgcggta cacggccacc ttgtcctcgg catccacggc
      301 ggcgacggaa tcctcgcaat ccatgatggt gctgatggcg gattccagaa tgatgtcggc
      361 aacgcccgct ttgtcggtct tgccgatatt gttggtggcg tcgatgagaa gttcggcgtg
      421 gaggttgtga ttcttcagca gcacggcgga gggcgacgcg gcgctgccat tatagccggc
      481 gaattgcgcg ccatccttca gccccacctc gccggattcc agcaccgcgg cgagatggcc
      541 gttatgcacc ttgtaggcgg tgacgtcggc atggctgcca ttggcgagcg gaaaatgcgc
      601 atccaggaag gcgcggccgc gggcaatgac ggctgctgca cgggtaaggt taaacccctt
      661 gccgcgggcg atctcgccat cgtcgggcag cgcgtccgtg ccgtagagcg catcgtagaa
      721 actgccccag cgcgcattgg cggcattcag cgcgtagcgg gcattggaga cgggcaccac
      781 cagctgcggc ccggcgatgc gggcgatctc gtcatccaca agcgccgtgt cgatggcgaa
      841 agacgccggc tcggggcgca gatagccgat ctcgcgcagg aaagcctcat aggcggccgc
      901 gtcatgcggc tggcccttgc gggcgaggtg ccaggcatcg atctggccct gcagctcgtc
      961 gcgcttggcc aggagggcgg cgttgctgac agcatatttc tgcagcaggg cggcaaagcc
     1021 ttcccagaag ggccccgtct ccaccaaggt gccgggcagg gcctccttgt tcacgaaatc
     1081 ataaagcacc gtggcgatgc tgagaccgtg cagggcagtc cgggaggcgg gcatggggaa
     1141 ctccttcgtc gttctccgcc ctgatgccgc aaaggagccc aaactggcaa gggcggggcg
     1201 tcagggcagg cggccgaaca cctccacctg gttcagatgc aggaaatcgc gcgcgagcag
     1261 ggtgatgcgc acgaaacgcg cccaggccgt gcccggcccg ttccagatga agggggcctc
     1321 caccaccgcg ccgtcgcgtt tttcaatgag ttccacccag gcctcgccat cgatggagac
     1381 ttgcagcgcg aaatcgcgga agcgctcgcg cgtgtggtcc gtggtgttgt ggatgtggat
     1441 ttcggtgatc gtggcgatgc cgccaagatc gagctgccac cagggctggt cctcgatgtc
     1501 tgtgtgaaac ttgcgcgtac catcaatcac gccattcacg gccccggccg cgtccgcctc
     1561 cctggtggac gcaaaagacc attggccgag cgagctttgg gttgctcgct tgtggcggga
     1621 aatattgtct gtccgggcag gggcaggcga agccagcccg caagctgagc ggtaggcctg
     1681 cagattggca tattcattct gtcccggcag atattggcgc gaaccacctg gcacggcttc
     1741 ggcgatttca gccagaaacc gcgccatttc cgcatcgtca cgccaggcat ggcgataaac
     1801 cggctcgctg cccagctgtg ccagcagcct ggcatttgtc tccaattcct ggggcgtgcc
     1861 cgcggaggcc gccggtacgt tggcaaggcc accatcgagc accgtgaaca aggtgcggcg
     1921 caccccgctt tcttccgtga cgatgccgcc gaacccggcc ctgacggcac ggaaggagag
     1981 atcggaatgc tcgtggccat agcggccgaa gcgcaggtcg agataaccga tccgggcaag
     2041 ggcatggcgc gaaaacgcat aagcccagcc ggagatgacg ctggccagca aggggtcgtc
     2101 agccgttccg catcccgccg ccacactgtc gcgatggccc ggatgcacaa gattgacatg
     2161 gccatggcgc caggccgccg ccagccaatc acgttcccat cccggcgccg ccggcaggac
     2221 atcgtcatcc agcaacagga tcacatcgca gcgcataacg tgctgcaggt agtaaacccc
     2281 tcgattcttg ttccaggcga tgccgcgatt tgtgccgcca atgacggtga tacccatggc
     2341 ccgcaaagcc tccgccgtgc catcgctgga gccgtcatcg cagatgacga gttcgaaggg
     2401 cgtctgcgtc agtgcgcgga tggtctcaac cgccgcgcaa acaagggtgc gccggttgag
     2461 cgtggtgatg gcaatgccaa ggcgcagccc gcttatgacc tcatcgtcca ccgggcgcgg
     2521 tggcaataaa acctgccttg cctccctcgg tgccagcatg gccttgattt ccggaccgcg
     2581 ctttgcggcc ctgtcatcgg acagctcgtt gcggtcatag gcggcaaatt cgctgtcggt
     2641 gcgtgtccag tgcggatagc cgcgcgcgag tttctcccgc caatgcgccg ccgagcgagt
     2701 gaaataatgg ttgagcgccc cgccggcata atccggatca tgggcaagat ggccgggcca
     2761 cggcccccag gagacaggcc ggcccgccaa gtccacataa tcgccgcgca tggtaaaagc
     2821 atgcgggctg agcacggcct ccatcagcgc cgggcggatg atggatttaa catgccggtt
     2881 gggctcgaaa ctggccggcg cacggcgggt gaaggcctcg atgaccagcc cgtccggctt
     2941 ctcctcatgc ccgttggcgc cgaacatcgc ccaggacacc gccaccgccg cctcgggccg
     3001 cgccgcgagg attgttttca ggctcacccc gccatcgagg cgcaggaact cgtccgtgtc
     3061 gaaaaaggcc agccattcat attcgccggc tacagctcgg gcggtctgtt cataggctcg
     3121 gacctggtag tcggccttgt tatagggata atcgaatacg cgcacatcga agcgctgagc
     3181 gaggccgcgc gccaccgcgg cagtgcggtc cgtggaggcg ttgtcgagca ggaaaaccgt
     3241 atcgaaccct ataaggaact gccaggccag ccattcggcg atgtgggctt cctcgttctt
     3301 gacgatgcct acgcagccga tctggcccat aaatatccct gctgacccta ttgaaaacct
     3361 gtttgacttg aaacccagag gtgaacaagc ctcttgcgga ataaggggtt ttgggccatc
     3421 tagcgtgaca ggagccggga ttttgccgga gaccagcctt atgcggctgg ttccgtgtgc
     3481 ctggtgccaa ctgcagacga taatgcagca acaactgcca atggctgggg tccgcccggc
     3541 gagtttaagg atcgatgacc gctttgcctg ccagagctgc tgatatctac ctggtcaagg
     3601 cgccacgcgg ttccgtttcc ctgttttcat ccctttttcg cgctgccgcc gctctgagcc
     3661 tgtacgctcg ggccccggcc ctgcgcgcgc accggagttt ttatgacgaa aagaatgttg
     3721 atcgatgcca gccatgcgga agagacccgc gtggtggttc tggatggcaa ccggcttgag
     3781 gatttcgacg ttgagaccgt cggccgcaag cagataaaag gcaatatcta tctcgccaag
     3841 gttataaggg tcgaacccag cctgcaggcc gcctttgtcg aatatggcgg caaccggcat
     3901 ggtttccttg cctttggcga aatccacccg gattattacc agatcccggt ggccgaccgg
     3961 cagaagctgc tcgccttgca ggccgaggaa gaggagcagg ccctggccga ggaagaggcc
     4021 gaggaagccg cgcccgaagc tgaggagcgg cctgaggaga acctggctga ggaggcccag
     4081 cccgcccagg cgctggaaat caaacccatc gagatcattt ccgcaccgcc gccggccgag
     4141 cctgagccgg aaggcgaggt gctggaggaa tcgccgggta tccgcgaggc gctgagcgag
     4201 gcacccaccg aggacacgag cttcgcgcca gacccggagg ccccggctga tgacgctctg
     4261 gcggaaaccc tgccggcgga aatcgaagcc gaggccctga ccggcgagag cgaggacacg
     4321 ggcgccgcgg aagccttcgc cgccgtggcg gccgaaagcg gcgttgccat ggaagccggc
     4381 gaaacggaag ccggcgaaac ggaagccggc gaaacggcgg aaaatggcga caatgtcacg
     4441 atcgtcgaga ccgtggaaag cgacgaggcg gtggagacca tcaccccgga agccccgccg
     4501 cccgagcaga tcggcggcga cggcgacgat gccgccgaag cgcgcgagcg ccgcatgcgc
     4561 cagcgcttcc tgcgaaatta caagatccag gacgtcatcc accgccgcca gatcatgctg
     4621 gtgcaggtgg tgaaggagga gcgcggcaat aagggtgctg cgctcaccag ctatctctcg
     4681 ctcgccgggc gtttctccgt gctcatgccc aactcgccca cgggcggggg cgtgtcacgc
     4741 aagatcacct cgcaggccga ccgccgccgt ttgaaagagg cgatggccga actggatgtg
     4801 ccgcagggca tgggcctcat cgtccgcacc gccggcgcca accggccgaa gcccgagatc
     4861 aagcgcgatt gcgaatatct gctgcggctg tgggacgata tccgcgacaa gacgatggaa
     4921 tcgtctgctc cggcgctgat ctatgaagag gccaatctca tcaagcgcgc catccgcgat
     4981 gtttacacgc gcgacgtgga ggaaatcctt gtcgatggcc gcgagggcta ttccgccgcg
     5041 cgcgacttca tgcgcatgct catgccgagc caggcgggcc gggtgcagag ctggggcgac
     5101 gggcagccgc tcttctccaa attccaggtc gaggcccagc tcgacgccat gctctcgccc
     5161 ctcgtgcagc tgcgctcggg cggctatatc gtcatcaacc agacggaagc gctcgtcgcc
     5221 atcgacgtga attccggccg ctccacgcgc gaacgctcga tcgaggacac ggcactccgc
     5281 acaaaccttg aagccgccga ggaagtcgcg aagcagctgc gcatgcgcga cctcgccggg
     5341 ctcatcgtca tcgacttcat cgatatggag tcccgcaaga ataattcggc cgtcgagcgc
     5401 aagctcaagg acgcgctgaa gcatgaccgc gcgcgcatcc aggtggggtc catcagccat
     5461 ttcggcctga tggagatgag ccgccagcgc ctgcggccct cgctcaccga ggcctcgctc
     5521 atcacctgcc cgcattgcgc cggccagggc catatccgca gcccggagag cgcggctttg
     5581 cacatcctgc gcgccatcga ggatgagggc gcgaaattcc gcgccgcgga aatctccgtg
     5641 gcgctgccgc cggaaatcgc gttctatctg ttcaaccata agcgcgagcg gctttcgcac
     5701 atcgaatccc gctacaatat gcgcgtggtc tttgcgccgg acgccaccat ggcggggacg
     5761 aatttccgca tcgagcggct gcgcgcgcaa accgcccagc cgcccgcccc tgcccccgtg
     5821 cgccccgagc gccagcttgc cgcgccgcag ccggagccgg aggtgacgga cgaggaagag
     5881 gccgaaaccg aggccgccga aggcgccgag gccgcgacag aggagaaagg cgagcgcaag
     5941 cgccgccgcc gccgccgcgg caagcgccgt gaggaccgtc cggcccaggc cggcgccgaa
     6001 gaggctgccg aggaggccca ggccgagggg gacgaggcag aagaggccgc gcccgccgag
     6061 acgcagcccg cagccgtcga gctcgacctg gaagccgagc tggaagccgc cctcagcgcg
     6121 accgacg
//
LOCUS       DASQCV010000447         1813 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_927308, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000447 DASQCV010000000
VERSION     DASQCV010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1813
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_927308"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1073)
                     /locus_tag="VEQ16_06755"
     CDS             complement(<1..1073)
                     /locus_tag="VEQ16_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012111292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HYP63568.1"
                     /translation="MATVKGSDLLVKALENEGVTHVFGVPGEENLDFVESLRNSSIKL
                     VITRHEQPAAFMAATYGRLTGRPGVCLSTLGPGALNLVTGAAYALLGAMPMILITGQK
                     PILSSRQARFQIVDIVNTMRPLTKLSRQIVSAASIPATVREAFRVTREERPGPVHLEL
                     PEDIAREMTEHDAVIPPHEIPLPVASEASLARAAAMIVAAKRPLIMLGAGANRVALAD
                     ALSAFVKRTNIPFFNTQMGKGAVTGCSELYVGTAALSERDYIHRMIDRSDLIIAIGHD
                     TVEKPPFLMQPEQHVIHVGFMPATVERVYFPDSEIIGDVGPGLLRLAELVAGRLKQDP
                     AFVALKDEVIAHVSDRATESRFPL"
     gene            complement(1115..>1813)
                     /locus_tag="VEQ16_06760"
     CDS             complement(1115..>1813)
                     /locus_tag="VEQ16_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYP63569.1"
                     /translation="TRCALEHGGAAPVIIDRSAPLDDIITPLVKGGYYHAGQVCVSVQ
                     RIFVHEDISKPFLERFTAAVEKLRVGDPVLAETEVGPLILPKEVTRVEDWVNEATKAG
                     TRLVTGGKRISDRVYAPTILVEPPANVRVSTKEVFGPVTCVYGYRDMDEAIARANSLP
                     YAFQAAIFASDINAALHGARTLAGSAVLINDHTAFRTDWMPFAGQRQSGYGTGGIPYT
                     MRDMTHEKMIVLKF"
BASE COUNT          326 a          541 c          606 g          340 t
ORIGIN      
        1 agcggaaagc ggctttccgt ggcgcggtcg gagacatggg ctatcacttc gtccttgagt
       61 gccacgaagg cggggtcctg cttcaaccgt cctgccacca gttccgccag tcgcagcagc
      121 ccgggcccga catcgccgat gatttcgcta tcggggaaat agacccgctc caccgtggcc
      181 ggcatgaagc cgacatggat gacatgctgt tccggctgca tcaggaaagg cggcttttcc
      241 accgtgtcgt ggccgatggc gatgatgagg tccgagcggt cgatcatgcg atggatataa
      301 tcgcgctcgg acaaggccgc ggtgccaaca taaagctccg agcagccggt gacggcgccc
      361 ttgcccatct gcgtgttgaa gaaggggata ttggtgcgct tcacgaaggc cgacagcgca
      421 tcggccagcg ccacgcggtt ggcgccggca ccgagcatga tcaagggacg tttggccgcg
      481 acgatcatcg cggcggcgcg cgccagggag gcttcggacg cgacgggcag cgggatctcg
      541 tgcggtggga tcaccgcgtc atgctccgtc atttctcgcg caatatcctc gggcaattcg
      601 agatgtaccg ggcctggccg ttcctcgcgt gtgacgcgga acgcctcgcg caccgtggcg
      661 gggatgctgg cggcactcac aatctggcgg gagagtttcg ttagcggccg cattgtgttg
      721 acgatgtcga caatctggaa acgcgcctgg cggctgctca ggatcggctt ctggccggtg
      781 atgaggatca tcggcatcgc ccccagcagc gcataagcag caccggtgac gagattaagc
      841 gctcccggcc ccagcgtgct gaggcagacg ccgggccggc cggtaaggcg gccataggtg
      901 gcggccatga aggcggccgg ctgctcgtgc cgtgtgatga ccagcttgat ggaggaattg
      961 cggagggatt cgacgaaatc gagattttct tcgccaggca cgccgaaaac atgcgtcacg
     1021 ccctcattct caagggcttt gaccaggagg tccgatcctt tgacggtcgc catgcgagct
     1081 cctctgttat ctgccgtgaa atcgccgccg tgcttcagaa tttcagcacg atcattttct
     1141 catgcgtcat gtcgcgcatg gtgtagggga tgccgcctgt accgtagccc gactggcgct
     1201 gcccggcaaa aggcatccag tctgtgcgga aggcggtatg gtcgttgatg agcacggcgg
     1261 agcccgccag ggtacgggcg ccgtgcagag cggcgttgat gtcggaggcg aaaatcgcgg
     1321 cctggaaggc gtagggcagg ctgttggcgc gggcgatggc ctcgtccata tcgcgatagc
     1381 catagacgca ggtgactggc ccgaaaacct ccttagtgga aacgcgcaca ttggctggcg
     1441 gttcaacgag gatggtgggc gcgtagacgc gatcgctgat ccgcttgccg ccggtgacga
     1501 gccgggtgcc agctttggtg gcctcgttca cccagtcctc gacgcgggtc acttccttcg
     1561 gcaggatcag cggcccgact tcggtttccg ccagcaccgg gtcgccgacc cgcaattttt
     1621 ccaccgcggc ggtgaaacgt tcaagaaacg gcttgctgat gtcctcatgg acaaaaatgc
     1681 gctgcacgga cacgcagacc tgcccggcat ggtaatagcc ccctttcacc aacggtgtga
     1741 tgatgtcatc cagcggcgcg gagcggtcta tgattaccgg cgcggcgccg ccatgttcca
     1801 gcgcgcagcg cgt
//
LOCUS       DASQCV010000448         1634 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3082834, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000448 DASQCV010000000
VERSION     DASQCV010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3082834"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1141)
                     /locus_tag="VEQ16_06765"
     CDS             complement(<1..1141)
                     /locus_tag="VEQ16_06765"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HYP63570.1"
                     /translation="MSLIADRLNRISPSQTIAISTKARELKAAGRDIIGLSAGEPDFD
                     TPDHIKQAAIDAIKAGDTKYTDVSGTPALRKAVAAKFLRDSGIDYKPEETIVSTGGKQ
                     VIFNAMLATVQAGDEAIIPTPCWVSYPDIVALAEGTPVFVPCSQNNGFKLRAEDLEAA
                     ITPKTKWFFLNSPSNPTGAAYSAEELRPICDVLLKHPNVWVFTDDIYDKLTYDGFKPA
                     TIVQVEPRLRDRTITMNGCSKAYAMTGWRIGFCGAPVQLIKAMDKLQSQSTSNTSSVS
                     QAAAVAALNGPEDALGEMVKVYKERRDLVVEMLNQAEGITCHKPEGAFYVFPAIHGCL
                     GKTTPKGAKINNDEDFVNALLDEEGVAAVHGSAFVYPGHFRISYAT"
     gene            1335..>1634
                     /locus_tag="VEQ16_06770"
     CDS             1335..>1634
                     /locus_tag="VEQ16_06770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63571.1"
                     /translation="MRKFICSYRGVILLGFACSLGVAPAAAQTATGSMVPVPAGSTGT
                     APATKHASKLPKSEEFTSAEAAAAHCPNSVVVWSSLGSTHSFHLSGSRYYGKTKHG"
BASE COUNT          300 a          481 c          527 g          326 t
ORIGIN      
        1 aggttgcgta ggaaatgcgg aaatggccgg gatagacgaa agcggagcca tgcaccgcgg
       61 cgacgccttc ctcatccagc agggcattga cgaaatcctc gtcgttattg atcttcgcgc
      121 ccttcggggt agtcttgccg aggcacccat ggatggcggg gaaaacgtag aacgcgcctt
      181 ccggcttatg gcaggtgatg ccttccgcct ggttgagcat ctccaccacc aggtcgcggc
      241 gctccttgta cactttcacc atctcgccca gcgcgtcttc cggcccgttg agcgcggcca
      301 cggcggcagc ctgagagaca gaggaggtat tggaggtgga ctggctctgc agcttgtcca
      361 tggccttgat gagttgcacg ggcgcgccgc agaagccgat gcgccagccg gtcatggcat
      421 aggctttcga gcagccattc atggtgatgg tgcggtcgcg caaacgcggc tcaacctgca
      481 cgatggtcgc tggcttgaag ccgtcatagg tgagcttgtc gtaaatatcg tcggtgaaaa
      541 cccagacatt cgggtgcttc agcagcacgt cgcagatcgg gcgcagctcc tctgcggaat
      601 aggcggcgcc agtcgggtta ctgggcgaat taaggaagaa ccatttggtc ttcggcgtga
      661 ttgcggcctc gaggtcctcg gcgcgcagct tgaagccgtt attctggctg cagggcacga
      721 aaaccggcgt gccttcggcg agcgccacga tgtccggata gctcacccag cacggggtcg
      781 ggatgatcgc ctcgtcgccc gcctgcacgg tggccagcat ggcgttgaag atgacctgct
      841 tgccgccggt ggaaacgatg gtttcctccg gcttgtagtc gatgccggag tcacgcagga
      901 atttggcggc gacggctttg cgcagcgccg gggtgccgga cacgtcggta tactttgtgt
      961 cgccggcctt gatcgcgtcg atggccgcct gcttgatatg gtcgggcgtg tcgaaatccg
     1021 gctcgccggc ggacaggccg ataatatcgc gcccggcggc tttcagctcc cgcgccttgg
     1081 tggaaatggc gatggtctgg ctcgggctga tacggttcag gcgatcggca atcaggctca
     1141 ttttggcgtc tcgatgatgt ttatgggcgg gacgcgttct agccctgtga gatgccgcgc
     1201 gcaaatcatg ccatacgccc ggaggggcac ggaaaacacg ccacgccgcg cggttttctc
     1261 cttttacgtg catattgccg atctaacaac ctgtgatagt cttcgtacag acacagcacc
     1321 ggcaggaggg gcgcatgaga aaattcatct gttcgtatag gggcgtcatc ctgctcgggt
     1381 ttgcctgcag cttgggcgtg gcgcccgccg cggcgcaaac cgccacgggc agcatggtgc
     1441 cggtgccggc aggctcaacc ggcaccgcgc cagccacgaa acatgcgtcc aaactgccaa
     1501 aatcagagga atttacgagc gcagaagccg ccgccgccca ttgcccgaac agcgttgtgg
     1561 tctggtcgag cctcggcagc actcatagtt tccacctcag cggctcgcgc tattacggca
     1621 aaaccaagca tggc
//
LOCUS       DASQCV010000449         2143 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_594755, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000449 DASQCV010000000
VERSION     DASQCV010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_594755"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..645)
                     /locus_tag="VEQ16_06775"
     CDS             complement(<1..645)
                     /locus_tag="VEQ16_06775"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008491979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP63572.1"
                     /translation="MIVALSFVIWLYLLFLHGNFWRSAPELKPAVPHTAPDVDIIVPA
                     RDEAALIGPVIASLTAQEYQGKVRVILVDDNSADGTAEAAGQHPRLTILKGAPKPPGW
                     AGKLWALAQGAEASAAPLIFFTDADIVHDPRHLATLVTRLNTPRVDMVSEMVRLNCSS
                     WPERFLIPAFVYFFQLLYPFAQVNNPRARMAGAAGGTVLIRREALRRIGGIEAIK"
     gene            complement(642..1634)
                     /gene="hpnA"
                     /locus_tag="VEQ16_06780"
     CDS             complement(642..1634)
                     /gene="hpnA"
                     /locus_tag="VEQ16_06780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015074128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hopanoid-associated sugar epimerase"
                     /protein_id="HYP63573.1"
                     /translation="MGDLALVTGATGFVGAAVARTLLAAGFSVRVTSRAGSDKRNLAA
                     LEAETVPLDLSDPASFAPALQGCRYLFHVAADYRLWVPDEAAMRRVNVDGTSALLRAA
                     AAAGVERTVYTSSVAALGLTADGSPADEQTPVLPAHHVGAYKQSKYDAEAAVRTLAEN
                     GQNIVIVNPSTPVGPGDVKPTPTGQMILDAARGRIPAFVDTGLNLVHVDDVAQGHLLA
                     LHKGASGQAYILGAENMMLRDILHMVAVQSGRRPPLIRLPIAPLVPIAAIMEQISART
                     GKTPLMTRDVLKMARKKMFFSSARARRELGYAPRPAAMAVRDALSWFRKEGMLR"
     gene            1736..>2143
                     /locus_tag="VEQ16_06785"
     CDS             1736..>2143
                     /locus_tag="VEQ16_06785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008491981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin family protein"
                     /protein_id="HYP63574.1"
                     /translation="MDDTTVATADYNARNWTYAKTGPIKTGSPEHLEMLTELLGATYN
                     PYKPAVLDWPVLEPETKKRITTLPIWDMAVQAENKAGARIEFFAQTIKDKKLRAALLH
                     MAGEERRHREVLSKLIAAYDIPILPDEEYVLPVD"
BASE COUNT          392 a          664 c          751 g          336 t
ORIGIN      
        1 ctttatggct tcgatgccgc cgatgcggcg cagcgcctcg cgccttatga gaacggtgcc
       61 gcctgcggcg ccggccatgc gggcgcgcgg attgttcacc tgtgcgaagg gatagagcag
      121 ctggaagaaa tagacgaagg cggggatgag gaagcgctct ggccaggaac tgcaattcag
      181 ccgcaccatc tcggacacca tgtccacgcg cggcgtgttg aggcgtgtca ccagagtggc
      241 gaggtggcgc gggtcgtgaa cgatgtcggc atcggtgaag aagatcagcg gggctgcgct
      301 ggcctccgcc ccttgcgcca gggcccagag ttttcccgcc cagccggggg gcttgggcgc
      361 ccccttgagg atggtgaggc gcggatgctg gccggcggcc tcggctgtgc catcggccga
      421 attatcgtcc accaggatca cgcggacttt gccctggtac tcctgcgccg tgagtgaggc
      481 gatgaccggg ccgatgagcg cggcctcgtc gcgggccggc acgatgatgt ccacgtccgg
      541 ggcggtatgc ggcacggcag gcttcagctc cggcgcggaa cgccagaaat ttccgtgcag
      601 gaagagcaga taaagccaga tgacgaagga gagcgcgacg atcaccgcag catgccctcc
      661 ttgcggaacc agctcagcgc gtcgcgcacc gccatggcgg cggggcgggg ggcgtagccc
      721 agctcgcggc gggcgcgggc ggaggagaag aacattttct tgcgcgccat cttcagcacg
      781 tcgcgggtca tcagcggggt tttgccggtg cgggcggaaa tctgctccat gatggcggcg
      841 atgggcacga gcggagcgat gggcaggcgg atgagcggcg ggcggcggcc gctctgcacc
      901 gccaccatgt gcaatatgtc gcgcagcatc atgttttcgg cgccgagaat ataggcctgg
      961 cccgaggcgc ccttgtgcag cgccagcaaa tggccctgcg ctacgtcatc gacatggacg
     1021 aggttgaggc cggtatcgac gaaggcggga atacggccgc gggcggcgtc aaggatcatc
     1081 tggccggtcg gggtcggctt cacgtcgcct gggccgacgg gggtggaagg gttgacgatg
     1141 acgatgttct gcccgttctc ggccagggtg cggacggcgg cttcagcgtc gtatttgctc
     1201 tgcttatagg cgccgacatg gtgggccggc agcaccggcg tttgctcgtc agcgggcgag
     1261 ccatccgcgg tgaggccgag ggccgcaacc gagctggtat agacggtgcg ttccaccccg
     1321 gcggcggcgg cggcgcgcag caaagcgctt gtgccatcga cattgacgcg gcgcatggca
     1381 gcctcgtccg gtacccagag ccggtaatcc gcggcgacat ggaagagata gcggcagcct
     1441 tgtagggccg gggcgaagct ggccgggtcg gacaggtcta ggggcacggt ttcggcctcc
     1501 agcgcggcca gattgcgctt gtccgagcca gcacgggatg tgacccgcac cgaaaatcca
     1561 gccgccagca atgtccgcgc cacggcggcg ccaacaaagc cggtcgcccc cgtcaccagt
     1621 gccagatcac ccaaaatccc acactccccg tttgcaacgc ctcgcgcccg ccatatacca
     1681 gcgtctgaca ctcttggaac cattgcccta ttggcgcaac cgcagggatt tcaccatgga
     1741 tgacacaacc gtcgcgacag ccgattataa tgcccggaac tggacctacg ccaagacagg
     1801 ccccatcaag accggctcgc cggaacatct ggaaatgctg acggaactgc tgggggcgac
     1861 ctacaacccg tataagccgg cggtgctgga ctggccggtc ctggagccgg agaccaagaa
     1921 gcgcatcacc accctgccca tatgggacat ggcggtgcag gccgagaaca aggccggagc
     1981 gcgaatcgag ttcttcgcac agaccatcaa ggacaagaag ctgcgcgccg ccctgctgca
     2041 tatggcgggt gaggagcggc gccaccgcga ggtgctctcc aagctgatcg cggcctatga
     2101 catcccgatt ctgccggatg aggagtacgt cctgcccgtg gat
//
LOCUS       DASQCV010000450         4271 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2584650, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000450 DASQCV010000000
VERSION     DASQCV010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4271
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2584650"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..746
                     /locus_tag="VEQ16_06790"
     CDS             <1..746
                     /locus_tag="VEQ16_06790"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HYP63575.1"
                     /translation="LFERRHRQVLLTARGRALLEQLTPSFDAIGRLLEEMRHAPAERI
                     LSISVEPSFAAGWLVPRLDRFRRLHPDIDVALDPDPRPAEFRAGGVQLAIRWSEAVTS
                     WPRVQSAHLADVTLSPVLSPALAATGPALRKPADLRRHILLHEDGRSGWTRWFQAAGV
                     AAPSGVRGPLFTDIVLALQAALRGHGVALANLLLAQEELQAGSLLKPFAIDVPGGAYW
                     LVAPDLQRLSQEAAAFVGWIRDEFTSTRA"
     gene            827..1462
                     /locus_tag="VEQ16_06795"
     CDS             827..1462
                     /locus_tag="VEQ16_06795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63576.1"
                     /translation="MFQRKTVNVTSRDALDDALRTADRVIVEGDDQLLSYAVSKAACD
                     PKNEIEVETASFDFAGPGMAAPAIFDPAAFQMLGDSAAPPPPRLRARAGGTLRMELYG
                     VIGFFIVLVLVGAVAVLGLQQRASFSPPPPGAAGGQALATQIATLPANDLQALAWPAV
                     AIAAIIALFLIAILAIMNGRNVEISWQVTEKMAGRVIITKVRQRRAKEATA"
     gene            complement(1464..3017)
                     /locus_tag="VEQ16_06800"
     CDS             complement(1464..3017)
                     /locus_tag="VEQ16_06800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HYP63577.1"
                     /translation="MSITERPVEIAAKHRGLVTACLMSATLMQALDQTIANVALPYMQ
                     GSLSASYDQMTWVLTSYVVMAAIMTAPVGWLSARYGRKNLFIVCLSGFTIASALCGMA
                     DSLFQIVLFRLLQGAFGAALGPLAQATLLDIYPLQQRGKAMAWFSMGVMLGPIIGPTL
                     GGYLTADFSWRWTFFVNIPFGIATVLGLAAFMPRAEPGQKSRFDWTGFAVLGMALAAL
                     QYALDRGDELDWLSSRTIIACFVVAGLGFYLFIVHLTLARNTFVPRAVFADRNFLAGL
                     VTIGSLGLVLISSSSLLAPYLENLSGYPVAQAGLVMAPRGFGTLVSMQIAGRLANKVD
                     PRLMLFTGFALLTIALWLQMSWTPDVSDFTLAATITLQGFGLGLVYVPLQIISFYTLP
                     ADLRTQGAAMLALVRSVAAAIGVSLTTWLLDRMAQYEHAVLNASVTPFARALQVGGHV
                     TAMLNPATAGGAAQLNGLLGTQAQIIAYVDDFKFMMLSTLPAFACLLLTRRPPVLEEV
                     DTDALHVME"
     gene            complement(3017..4117)
                     /locus_tag="VEQ16_06805"
     CDS             complement(3017..4117)
                     /locus_tag="VEQ16_06805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HYP63578.1"
                     /translation="MSQANIAGREQATSGSGLAAVQRANRGRLLRPLLMIGGVAAVLL
                     GALFLWLFSGGSVSTDDSYVDAAKVSLSTDVPGEVEQIFVHDNEHVTAGQPLFAIGQD
                     QYQIALERAQAQVAQAVEGIEGAKRSYQQAVAQINEAKVQVAKDQDDLARYESVVAKG
                     GATQADTDHARFALQADQQRLAELEQAAGLQLTKLQGDPDIKPGDTPEVKQANAALRD
                     AQRDLDHSVVKAPFSGTVTDVEQLQPGMFLPAGTAAFGLVSDQDVFITAQPKEDQLTW
                     VRPGQRVSISVDTYPGQSWKGEVESVSPAAGSEFAILPAQNSSGNWVKVVQRIPVRIK
                     ILSGPADLPLAAGMSTEISIHTDHERHLTDLF"
BASE COUNT          776 a         1487 c         1301 g          707 t
ORIGIN      
        1 cgttgtttga gcgccggcac aggcaggtgc tgctcaccgc gcgcggccgc gctctgcttg
       61 agcagctcac gccaagcttc gacgccatcg gccgcttgct ggaggagatg cggcacgccc
      121 cggccgagcg catcctctcc atcagtgtgg aaccctcctt cgccgccggc tggctggtgc
      181 cgcgcctcga ccgtttccgc cggctccacc ccgacatcga tgtggccctc gaccctgacc
      241 cgcgcccggc ggaattccgc gccggcggcg tgcagctcgc catacgctgg agcgaggctg
      301 ttacctcctg gccgcgcgtg cagtccgcgc atctggcaga tgtcaccctc tcgcccgttc
      361 tctcccccgc cctcgccgcc accggcccgg ccttgcgcaa accggccgat ctgcgccgcc
      421 atattctgct ccacgaggat ggccgcagcg gctggacgcg ctggttccag gccgccggcg
      481 tggcggcgcc gagcggcgtg cgcgggcctc tgttcaccga catcgtcctc gccttgcagg
      541 cggcattgcg cggccatggc gtggccttgg ccaatctgct gctggcgcag gaggaactgc
      601 aggcgggcag cctgctaaaa cctttcgcca tcgacgtgcc cggcggcgcc tattggctcg
      661 tcgcgccgga tttgcagcgc ctcagccagg aggcggcggc gtttgtcggc tggatacggg
      721 acgagttcac cagcacgcgg gcataacccc ccccccatga ctcctgaagc aaaattaaat
      781 cgatcctggc atgagttaat ggtttaatgc cgcgtcgggg gttgccatgt ttcagcgcaa
      841 gacggtgaac gtgaccagca gagatgccct ggacgacgcc ttgcggacgg cggaccgggt
      901 gattgtcgag ggcgacgacc agctcctctc ctatgccgtg agcaaggcgg cgtgcgatcc
      961 taagaacgag attgaagtgg aaaccgccag cttcgatttc gcaggcccag gaatggccgc
     1021 gcctgcgata ttcgatccgg ctgcctttca gatgctgggc gacagcgccg ccccgccgcc
     1081 gccgcgcctg cgggcgcggg ccggcggcac cctcaggatg gagctgtacg gcgtcatcgg
     1141 cttcttcatc gtgctggtgc tggtgggcgc cgtcgcggtg ctggggctgc agcagagggc
     1201 gagcttcagc ccgccgccgc caggcgccgc aggaggacag gcgctcgcaa cgcaaattgc
     1261 cacgctgccg gccaacgatc tgcaagccct ggcctggccc gccgtggcca tagccgccat
     1321 catcgctttg ttcctcatcg cgattttggc catcatgaat ggccgcaatg tcgagatcag
     1381 ctggcaggtg accgaaaaaa tggccggccg cgtcatcatc acaaaggtcc ggcagcgccg
     1441 tgccaaggaa gccacagcgt agctcactcc attacgtgca acgcatccgt atccacctcc
     1501 tccaacaccg gtggcctgcg cgtcagcagc aagcacgcaa aagccggcag agtggatagc
     1561 atcatgaact taaaatcatc cacataagca ataatctgcg cctgcgtccc cagcagcccg
     1621 ttgagctgcg ccgcgccgcc ggccgtcgcc ggattcagca tcgccgtcac atgcccgccc
     1681 acctgcagcg cgcgcgcgaa tggggtcacg gacgcgttca gcaccgcatg ctcatattgc
     1741 gccatgcggt ccagcagcca ggtggtcaga gacacgccaa tggccgccgc cacgctgcgc
     1801 accaaagcca gcatcgccgc cccttgcgtg cgcaaatccg caggcagggt gtagaaggaa
     1861 atgatctgca gcggcacata gaccagcccc agaccaaagc cctgcaaggt gatggtggcg
     1921 gccagcgtga aatcggacac gtccggcgtc cagctcatct gcagccagag cgcgatcgtc
     1981 agcagcgcaa acccggtgaa cagcatcagc cgcggatcca ctttgttggc cagccgcccc
     2041 gcgatctgca tcgacaccag agtgccgaag ccgcgcggcg ccatcacgag gcccgcctgc
     2101 gccaccggat agcccgacag gttttccaga tacggcgcca gcagcgagga ggaggagatg
     2161 agcaccagcc cgagcgagcc gatcgtcacg agtccggcaa gaaaattccg gtcggcaaac
     2221 acggcgcgcg gtacaaacgt attccgcgcc agcgtgagat gcacgatgaa cagatagaac
     2281 cccagccccg ccaccacgaa gcaggcgatg atggtgcgcg agctcagcca atccagctca
     2341 tcgccgcggt ccagcgcata ttgcagcgcc gccagcgcca tgcccagcac ggcaaagccc
     2401 gtccagtcga agcgcgattt ctgccccggt tcggcgcgcg gcatgaaggc cgccaacccc
     2461 agcacggtgg cgatgccgaa ggggatgttg acgaaaaacg tccagcgcca gctgaaatct
     2521 gccgtgagat agccacccag ggtgggcccg atgatcggcc ccagcatcac ccccatgctg
     2581 aaccaggcca tcgccttgcc gcgctgctgc agcggataaa tatccagcag cgtcgcctgc
     2641 gccagcggcc ccaaggccgc gccgaacgca ccctgcagca gccggaacag cacaatctgg
     2701 aagagcgaat ccgccatgcc gcacagagcc gaggcgatgg tgaatccgct caggcagacg
     2761 atgaagaggt tcttccgccc atagcgcgcc gagagccagc ccacaggcgc cgtcatgatg
     2821 gccgccatca ccacatagga ggtgagcacc caggtcatct ggtcgtagga ggcggagagc
     2881 gagccctgca tgtaaggcag cgcgacgttg gcgatggtct ggtcgagcgc ctgcatcagc
     2941 gtcgccgaca tcaggcatgc cgtgacgagg ccgcgatgct tggccgcgat ctcgaccggc
     3001 cgttccgtaa tggacatcag aacaaatcgg tcagatgccg ctcatggtcg gtatggatgc
     3061 tgatttccgt gctcatcccg gccgccagcg gcaggtcggc cgggccggac agaatcttga
     3121 tccgcaccgg aatgcgctgc accactttca cccagttgcc ggaggaattc tgcgccggca
     3181 gaatggcgaa ttccgaaccc gcggctggcg acacgctctc cacctcgccc ttccagctct
     3241 ggcccggata ggtgtccacg ctaatgctca cgcgctggcc cggccgcacc caggtcagct
     3301 ggtcttcctt gggctgggcg gtgatgaaca catcctggtc ggacaccagc ccgaacgcgg
     3361 ccgtgccggc gggcaggaac atgcccggtt gcagctgctc cacatcggtg acggtgccgg
     3421 agaagggcgc cttcaccacg gaatggtcga ggtcgcgctg cgcatcgcgc agggccgcat
     3481 tggcctgctt cacttccggc gtatccccgg gcttgatgtc cgggtcgccc tgcaatttcg
     3541 tcagctgcag cccggccgcc tgctccagct cggccagacg ctgttggtcc gcctgcagcg
     3601 cgaagcgggc atggtcggtg tcggcctgcg tcgccccgcc tttcgccacc acggattcat
     3661 agcgggcgag atcgtcctga tccttcgcca cctgcacctt ggcttcgttg atttgcgcca
     3721 cggcctgctg atagctgcgt ttcgccccct cgatgccttc caccgcctgc gccacctgcg
     3781 cctgcgcccg ctccagagcg atctgatact ggtcctggcc gatggcaaag agcggctgac
     3841 ccgccgttac atgctcgttg tcatgcacga aaatctgctc cacctcgccc ggcacgtcgg
     3901 tggagaggga cactttcgcc gcatcgacgt aggaatcgtc ggtcgagacg ctgccgccgc
     3961 tgaacagcca gaggaacaga gcgcccagca ataccgcggc cacaccgcca atcatcagaa
     4021 ggggccgcag cagcctgccg cgattcgccc gttggactgc ggcaagcccg gaaccggacg
     4081 tcgcctgttc gcgccccgca atattcgcct gcgacatagc tgaactcttc cttttgaata
     4141 atttctataa tcttgccgtc tgcaatatct tgccgtgtta ttcggccgcc cgcgtggcca
     4201 aatcctggcc gttctcaatg cttagaacat tcgctttcat ctgcagtaaa ccgtccacca
     4261 tcgcatcccg c
//
LOCUS       DASQCV010000451         1761 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2750444, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000451 DASQCV010000000
VERSION     DASQCV010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1761
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2750444"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..893)
                     /locus_tag="VEQ16_06810"
     CDS             complement(120..893)
                     /locus_tag="VEQ16_06810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HYP63579.1"
                     /translation="MSLSVSHLSVRFSGSDVLRDVSFSLAPGSFCGLIGANGTGKTTL
                     LRTILGFETPASGDVRRPGAVGYVPQKLQIAPDMPVRARDLVELGLNRPRFGFSLTSA
                     RRRARVEEMLRSVDALSFADQRAGELSGGQLQRVLIAHALISGPQLLLLDEPLANLDL
                     RAAAEIVALLRRLARQGVTILVSAHDMNPLLGAMDQLVYLANGRAASGPVAQVVRTEV
                     LSELYGYHIDVIRVHGRILVVAGEAGVPAHDHEHVAAIP"
     gene            complement(890..>1761)
                     /locus_tag="VEQ16_06815"
     CDS             complement(890..>1761)
                     /locus_tag="VEQ16_06815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HYP63580.1"
                     /translation="LLAVVAGTAQMVITGTAQARPQVALHAVGLESQYANVMAQIGGP
                     YVQVSAIEDDPNADPHEFELSPDVARRLHKADVIVANGLDYDDWADKLLAAAAGTVIT
                     AQAVRGLPDSTPNPHLWYDPATMPAVARAVAAAYAAKDPADAAYYESSEKRFEASLTG
                     WTQLLADIKARYGGTKIAVTEPVADYMLQAAGLAIATPWSLQAAVMNGTDPAPQDVGV
                     QQELLASKMVRVFVYNQQVTDSLTQSFLATAHQSGVPVLGVYELMPAGVTTYQDWMNS
                     ETAELARDLAAQK"
BASE COUNT          310 a          558 c          614 g          279 t
ORIGIN      
        1 ggcgaaagac tggccgcgca gcacggtgaa gacgccgatg atgccggaca ggaacgccgc
       61 cgcgccgctg atcaggaggg cgttctgcac cacgccgctt gcgaaaaatc cgtcgagcat
      121 caggggatgg ccgcgacatg ctcatggtca tgcgcaggca ccccggcctc gcccgccacg
      181 acgaggatgc gcccatgcac gcggatgacg tcgatatggt agccgtacaa ttccgagagc
      241 acctcggtgc gcaccacctg cgccacaggg ccgctcgcgg cgcggccatt ggcgagatag
      301 acgagctggt ccatggcacc aagcagcggg ttcatgtcat gcgccgagac caggatggtg
      361 acgccctggc gggcgagcct gcgcagcagc gcgacgattt ccgccgccgc gcgcagatcg
      421 agattggcca aaggctcatc gagcagcagg agctgcgggc cgctgatgag ggcatgggcg
      481 atgaggacgc gctgcagctg gccgccggaa agttcgccgg cgcgctgatc ggcgaagctg
      541 agcgcatcga ccgaccgcaa catctcctcc acccgagcgc ggcgccgggc ggaggtgagg
      601 gaaaagccga agcgcgggcg gttgagaccg agttccacca ggtctcgggc gcgtactggc
      661 atgtcagggg cgatttgcag cttctgcggc acgtagccga ccgcgccggg gcgccgcaca
      721 tcgccggagg ctggggtctc gaagccgaga atggtgcgca gcaatgtcgt cttgcccgtg
      781 ccattggcgc cgatgaggcc gcagaagctg ccgggggcga ggctgaagga gacgtcgcgc
      841 agcacgtcgc tgccggagaa acggacgctg agatgggata cggagagact catttctgcg
      901 ccgccagatc ccgcgccagt tccgccgtct cgctgttcat ccagtcctgg taggtcgtca
      961 cgccagccgg catcagctca tacacgccaa gcacgggtac gccggattga tgcgcagtgg
     1021 cgaggaagga ctgggtaagc gaatccgtga cctgctgatt gtaaacgaag acacgcacca
     1081 ttttggaggc gagtagctcc tgctgcacgc cgacatcctg tggcgccggg tctgtgccgt
     1141 tcattaccgc tgcctgcagg ctccaggggg tggcgatggc aagcccggcg gcctgcagca
     1201 tgtaatccgc cacaggttcc gtcacggcga ttttcgtgcc gccatagcgc gccttgatat
     1261 cagccagaag ctgggtccag ccggtgagcg aggcttcgaa tctcttctcg ctggattcgt
     1321 agtaagcggc atcggccgga tccttggcag cataggcggc ggccacagcg cgcgccacgg
     1381 cgggcatggt ggcggggtcg taccagagat gcgggttggg ggtggagtcc ggcaggccgc
     1441 gcaccgcttg cgccgtgatc actgtgccgg cggcggcggc gagcaatttg tccgcccagt
     1501 catcatagtc gagcccgttc gcgacgatga catccgcctt gtgcagccgc cgagccacat
     1561 ccgggctcaa ctcaaattca tgcgggtcgg cattggggtc gtcctcgatg gcgctgacct
     1621 gcacataggg gccgccgatc tgcgccatga cattggcgta ttggctctcc agccccactg
     1681 cgtgcagcgc gacctggggc cgtgcctgcg ccgtgccggt gatcaccatt tgcgccgtgc
     1741 cggcgacgac cgccagcagc g
//
LOCUS       DASQCV010000452         1632 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1591731, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000452 DASQCV010000000
VERSION     DASQCV010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1591731"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1230)
                     /locus_tag="VEQ16_06820"
     CDS             complement(<1..1230)
                     /locus_tag="VEQ16_06820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HYP63581.1"
                     /translation="MSGASATTGPGVAAGAADEIPLKNRIAVFGALIGAFMAVLNIQV
                     VNTSLPDIQGGIGAGLDDGGWISTSYLVGEIIVIPLSGWLAGVFSMRRYLIVNTALFL
                     FFSVTCGLATNFTEMVTLRALQGFTGGVLIPLSLLCVITLLPERARPVGFSLFALTAT
                     FAPAIGPTLGGAITDLYGWRYIFFLNLVPGAMMLAALLWGLAPAPMQVRNLWRGDWIG
                     ILTMAVGLGALQIVLEEGNKDDWFGSPFITHLSILSAVSLAVFLVQELRPGNKAPLVN
                     LRLFLHFRNFAVSNGAAFLLGFTLYAAVYLIPIYLAEAHGYSARQAGMVMLWIGLPQL
                     AIIPFMPKLMVWFDPRRLLAFGFALFAVSCFMNMNLGPNDSGPQMLIPNLIRAVGQAF
                     VFPPITMIATAGIPPRDS"
     gene            complement(1227..>1632)
                     /locus_tag="VEQ16_06825"
     CDS             complement(1227..>1632)
                     /locus_tag="VEQ16_06825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004271791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HYP63582.1"
                     /translation="HTQVVAPFDGMVGNKTVAVGDYLQPGAQVMAVVPLDQVYVIANY
                     KETQITNIRPGQKVRLSVDGFPDLKVTGHVDSIYPSSGQAFALLPPDNATGNFTKIVQ
                     RVPVKILLDLTPELVGKLRPGMSVEPEIDTRT"
BASE COUNT          368 a          524 c          505 g          235 t
ORIGIN      
        1 ggaatcccgc ggcggaatgc cagcggtcgc aatcatggtg atcggcggga agacgaatgc
       61 ctggccaacc gcgcggatca aattggggat gagcatctgc ggcccggaat cattgggccc
      121 gagattcatg ttcatgaagc aggatacggc aaacagcgcg aagccgaagg cgagcaggcg
      181 gcgcgggtcg aaccatacca taagcttcgg catgaaggga atgatggcga gctgcggcag
      241 gccgatccac aacatcacca tgcccgcctg gcgcgcgcta tagccatgcg cctcagcgag
      301 ataaatcggg atgagataga cggcggcata aagggtgaag ccgagcagaa aggccgctcc
      361 attggagacg gcgaaattcc ggaaatgcag aaacaagcgc agattgacga gcggcgcctt
      421 gttccccggc ctcagctcct gcaccaggaa gacggcgagc gacacggcgg agagaatgct
      481 cagatgcgtg atgaagggcg agccgaacca gtcatccttg ttgccctcct ccagcacaat
      541 ctgcagcgcg cccagcccca cggccatggt gaggatgccg atccagtcgc cacgccatag
      601 attgcgcacc tgcatgggcg ccggcgccag cccccaaagc agcgccgcca gcatcatcgc
      661 gcccggcacc aggttgagga agaagatata gcgccagcca tagagatcgg tgatggcgcc
      721 acccaaagtc gggccgatgg ccggcgcgaa ggtcgccgtc agcgcgaaca gcgagaaccc
      781 caccggccgc gcccgctccg gcagcagcgt gatgacacaa agcagcgaca gcgggatgag
      841 cacgccgccc gtgaagccct gcaaggcgcg cagcgtcacc atttccgtga aattggtggc
      901 aagcccgcag gtcaccgaga aaaacaggaa cagagccgtg ttgacgatga ggtaacggcg
      961 catcgaaaac acaccggcga gccagcccga gagcgggatg acgatgatct cacccaccag
     1021 ataggaggtg gaaatccacc cgccatcatc cagcccggcg ccgatgccgc cctggatgtc
     1081 gggcagtgag gtgttcacca cctggatatt cagcaccgcc atgaaggcgc cgatcagcgc
     1141 cccaaacacg gcgatacggt tcttcagcgg aatctcatcc gccgcacccg ccgccacgcc
     1201 cggcccggtt gtggcgctgg ccccgctcat gtgcgggtat cgatttccgg ctccaccgac
     1261 atgccggggc ggagcttgcc caccagctcc ggcgtcaggt cgagcaggat ttttaccggc
     1321 acgcgctgca caatcttggt aaagttgccg gtcgcattat ccggcggcag cagcgcgaaa
     1381 gcctggcccg aggagggata gatgctgtcc acatgcccgg tcaccttcaa atccggaaac
     1441 ccatccaccg agagccgcac cttctggccg gggcggatat tggtgatctg cgtctccttg
     1501 taattggcga tgacataaac ctgatccagc ggcaccacgg ccatgacctg cgcccccggc
     1561 tgcaggtaat cccccaccgc cacggtcttg ttgcccacca tgccgtcaaa cggcgcaacg
     1621 acctgggtat gg
//
LOCUS       DASQCV010000453         3398 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2750755, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000453 DASQCV010000000
VERSION     DASQCV010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3398
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2750755"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..493
                     /locus_tag="VEQ16_06830"
     CDS             <1..493
                     /locus_tag="VEQ16_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP63583.1"
                     /translation="LVLAANYESWRLPFSIVLIMPMCLLAAVTGLNIRGLDVDILTQI
                     GFIVLIGLAAKNAILIVEFARQAEEAGAEPRQAAIKAASTRLRPILMTSLAFLFGVLP
                     LVTATGAGAEMRQTLGTAVFSGMFGVTLFGLLFTPVFYIVVRNLFRKQHVTVAGARNM
                     PAE"
     gene            579..1193
                     /locus_tag="VEQ16_06835"
     CDS             579..1193
                     /locus_tag="VEQ16_06835"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP63584.1"
                     /translation="MRQKPITPPGRPREFDRDEALHVAMKLFCKHGYEGVSIAELTAA
                     MNISPPSLYAAFGSKEALFREALELYTKRPDLPHFRAASCIREQIKALLYDTVRAATD
                     PDYPAGCMVVAGMLACKPENEELAESVADLRTARCEMVNQHLQEAVASGQLPPETDTQ
                     AVGRFIMALAQGIAIQAHDGAPAEELYALVDVALQNWTMPQPAG"
     gene            complement(1178..3016)
                     /locus_tag="VEQ16_06840"
     CDS             complement(1178..3016)
                     /locus_tag="VEQ16_06840"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP63585.1"
                     /translation="MALSLLRHALDWCAGQGLDARPALRRARLKLRRGSPPVPGLVSI
                     ILPVRNRAGRIGKAASSVLAQSYRNWELLILDDGSADSTHEALRPYLRHPRILYFRLP
                     PRGAAAARNSGLSLARGGLIAYLDSDNEWEPDFLQGMVPAFDDPAVQSAYGILLTAAG
                     ETFEPFDRERLLVGNHIDLNIFLHRRDLFTRHGGFDESLARLLDWDLVLRYTQDSPAL
                     PVPVRGAYYRTDTANRISEAECYGTAYQHVRAKWRVGGAKLRVLYALSQYPQASETYI
                     EAEIAWMRRQGVHVEVWSDLVPCTPHASHVPVHNGSLQQAIDAAQPDIVHSHWLNVAG
                     TFAADIAASGLPLTARSHGFDMLDGATQAVLAHPNMPHLYLYPHHAAAAGLAESKRVR
                     LIWPGFDTSLISPAATPRDKQLVLRAAAGLPSKDLPLFMELAKRFPSHRFVLAVVACT
                     YRENYIAELLALRREMKSPVELCINMKHEEVLTLMKRAGIYLHTALPPDEPLGTPLGM
                     PISIAEAMASGCYVITRNFPDFQSYTGEAGAAYGDIEEAEALIAATAGWSEEQWRVAS
                     RRARERGWSLFTGEASYYRIYRDWLEIAAARQDVAAPPALAGQPAG"
BASE COUNT          632 a         1027 c         1129 g          610 t
ORIGIN      
        1 cctcgtgctg gcggcgaatt atgagagctg gcgcctgcct ttctccatcg tgctgatcat
       61 gccgatgtgc ctgctggccg cggtgacggg gttgaacata cgcgggttgg acgtggatat
      121 cctgacgcaa atcggcttca tcgtgctgat cggtctcgcc gcgaagaacg ccatcctcat
      181 cgtggaattc gcccgccagg cggaggaggc gggggcggag ccaaggcagg ccgccatcaa
      241 ggccgcctcg acgcgcctgc ggccgatcct gatgacgtct ctggccttcc tgttcggcgt
      301 gctgccattg gtaaccgcca cgggggcagg agcggaaatg cggcagacgc tgggcacggc
      361 ggtgttttcc ggcatgttcg gggtgacttt atttggtttg ctcttcaccc cggtatttta
      421 tatcgtggtg cggaacctgt tccggaaaca acatgtcacc gttgccgggg cgcggaacat
      481 gccggcggaa tgagaaagac acatggctcc cctccctccg gggagggcgc atggcagggg
      541 agagttgacc ggcccatggc gcgcacaatg tgtctcccat gagacagaaa cccatcacgc
      601 cgcccggccg cccgcgcgaa ttcgaccgcg acgaggcgct gcatgtcgcc atgaagctat
      661 tctgcaagca tggctatgag ggcgtctcca tcgccgagtt gaccgcggcc atgaatatct
      721 ccccgcccag cctctatgcc gccttcggca gcaaggaggc cttgttccgc gaggcgctgg
      781 aactttacac caaacggccg gacctgccgc atttccgcgc cgccagctgc atccgcgagc
      841 agatcaaggc gctgctctac gacacggtgc gggccgcgac cgacccggat tatccggctg
      901 gctgcatggt cgtcgccggc atgctggcct gcaagcccga gaacgaggag ctggcggaga
      961 gcgtggcgga tttacgcacg gcgcgctgcg agatggtgaa ccagcatttg caggaggccg
     1021 tggccagcgg ccagctgccg ccggagacgg acacccaggc cgttggccgt ttcatcatgg
     1081 ctctggctca gggcatcgcc atccaggccc atgacggcgc gccagccgag gagctttatg
     1141 cgctggtgga tgtggcgctg cagaactgga ctatgcctca gcccgccggc tgaccggcca
     1201 gagcgggcgg ggcggctaca tcctgccggg cggcggcaat ctccaaccag tcacgataga
     1261 tacggtaata ggaggcttcg ccggtaaaca ggctccagcc gcgttcgcgg gcgcgccgtg
     1321 aggccacccg ccattgttcc tcgctccaac ccgccgtggc ggcgatcagc gcttcggcct
     1381 cctcaatatc gccataggcg gcgccggcct cgcccgtata agattggaaa tcggggaaat
     1441 tgcgggtgat gacatagcag ccggaagcca tggcttcggc gatggagatg ggcatgccga
     1501 gcggcgtgcc aagcggttcg tccggcggca gggcggtatg caggtaaatc ccggcccgtt
     1561 tcatcagcgt cagcacctcc tcatgcttca tgttgatgca cagctccacc ggggacttca
     1621 tctcccgccg cagcgccagc agctcggcga tatagttttc cctgtaggtg caggcgacca
     1681 cggcgagcac gaaacggtgc gaggggaagc gcttggccag ttccatgaag agcggcaggt
     1741 cttttgacgg caggccggcg gcggcacgca gtaccagctg cttgtccctc ggcgtagctg
     1801 ccggtgagat cagactggta tcgaagcccg gccagatcag ccgcacacgt ttggattcgg
     1861 caaggccagc ggcggcggca tggtgggggt agagatagag atgcggcatg ttgggatgcg
     1921 ccagcacggc ctgggtcgcg ccgtccagca tgtcgaaccc gtggctgcgg gcggtgagcg
     1981 gcaagccgct tgcggcgata tccgcagcaa acgtgcctgc aacattgagc cagtgactat
     2041 gcacgatgtc cggctgcgcc gcgtctatgg cctgttgcag cgagccgtta tgtaccggga
     2101 cgtggctcgc gtggggcgtg cagggcacga ggtccgacca gacctccaca tgcacgccct
     2161 ggcgccgcat ccaggcgatc tcggcctcga tataagtttc gctcgcctgc ggatattgcg
     2221 aaagcgcata gagcacgcgc agctttgcgc cgcccacgcg ccatttagcg cgcacatgct
     2281 ggtaggcggt gccgtaacat tctgcttcgc tgatgcggtt ggccgtatcc gtgcggtaat
     2341 atgcgccgcg cacgggcaca gggagggcag gcgaatcctg cgtgtagcgc aacaccagat
     2401 cccaatcgag cagccgcgcc aagctttcat cgaagccgcc atggcgggtg aagagatcgc
     2461 gccggtgcag gaatatgttg agatcgatat ggttgccgac cagcagccgc tcgcggtcga
     2521 agggctcgaa tgtctcgccc gctgcggtga gcaatatgcc ataggcgctc tgcaccgctg
     2581 gatcgtcgaa ggccggtacc atgccctgga ggaaatccgg ctcccattca ttgtcggaat
     2641 cgagataggc gatgagcccg ccgcgggcga ggctgagccc gctattgcgg gccgcagcgg
     2701 caccgcgcgg cggcaggcgg aaatagagga tgcgtgggtg gcgcagatag gggcgcagcg
     2761 cctcatgcgt gctgtccgcg ctgccatcat cgaggatcag cagctcccag ttccggtagc
     2821 tctgcgccag gaccgaggag gccgccttgc cgattctgcc ggctcggtta cggactggca
     2881 aaatgatgct gacaagcccg ggcaccgggg ggctgccgcg gcgcagtttg aggcgggcgc
     2941 ggcgcagagc gggacgcgca tccagcccct gtccggcgca ccaatccagc gcgtggcgga
     3001 ggagagaaag cgccataact gcaaccgggc tcccaaaatt taaacatagt ttcccaaata
     3061 attaagattt tgatgggaga cgaggtagcg gagcagtcgt taacgtaaac ttttcgttac
     3121 tcaagcatcg agaatttgcg gcaaaaatat gcgcgccgcg ctccggaaaa tcagccaaga
     3181 tgcgccacta gatcctggat cagctgatgg cggacatgcg actcgggcgg ggctggtaca
     3241 atgcgggggc gagcttgagg ccggttttct accccggccc acatatggct ctatggccta
     3301 gattaccctg aaaagggcgt ggaactccta aatttcttgc ttcctgctaa tcatgttttg
     3361 gtccctgaaa acggctatca gggcaagggt tgagccgc
//
LOCUS       DASQCV010000454         5707 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1259782, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000454 DASQCV010000000
VERSION     DASQCV010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5707
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1259782"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..856)
                     /locus_tag="VEQ16_06845"
     CDS             complement(<1..856)
                     /locus_tag="VEQ16_06845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HYP63586.1"
                     /translation="MVFFISVMSSVGQTQVQTIPYSRFQTLLQSGGVDNLVINQDSIS
                     GTLKHPQNNEPADFVTNRVDPALAATLAHENISFSGAASSGAFSALLGWLLPLLLFVS
                     VYYLMAGGGGRAGGLLAVGKSKARVYAENDVPVRFKDVAGVDEAKAELKELVDFLKAP
                     ADYGRLGAHIPKGVLLVGPPGTGKTLLARAVAGEAGVRFFSISGSEFVEMFVGVGAAR
                     VRDLFEQARSKAPAIIFIDELDALGRARGLGPYAGSHDEKEQTLNQLLVDMDGFDSRT
                     GLVILAATN"
     gene            1132..3024
                     /locus_tag="VEQ16_06850"
     CDS             1132..3024
                     /locus_tag="VEQ16_06850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63587.1"
                     /translation="MTVKPEIISVLGESDVLLPGLISAALAANDRIKLRLSLLQAAAQ
                     AARLPGSPPPPLPQDDALAAELPPGALAQARLAEAQTLFLPGAGALLAGLRRDLAAML
                     APVAASGTEAAGDFAARAEALQPVFENAAGMIALAKIGALTSATREGGPKFHLLVMDL
                     HKAINQLAASAAAETLDGAAVHGLTAEDRVAVRAFMRGLHRTAPLAFGHPGLGTMAVR
                     GPAHLTIQNDIGTTDAHVLVVHVTDDSVSVTYTDIHRPRAKFFIGMFAGFAVEWTPLG
                     QRQAEGLEEEAFYLISGRFAFTVPEARDAFLEHLGSRLVFLIDWNKARKALQIFVGKN
                     EAIGLLSWSASQDYGHRAFLELGGAELVYEAVHRAAAGRIRYGERLDEALGEAECVAF
                     LRHTLRETSLGLQAGRGARLIRDEIQAELARRFETEESAVFTLLVRHLGLTRGLAEGV
                     EAALAAPDSGFARRAKAMEAKADRLTASARELAARRKGAAVLRQVIDEVENSTDTLED
                     CAHLLSLMPAAEMGRQLAPLASIVTSSVSAMVRAVEAASRMPDGQRADATSALQGIDE
                     VVSAEREADTAQRAILAALMTGPCADARALLLGLELAKALEGATDQLSHAAFALRDRV
                     LEELSA"
     gene            3021..4604
                     /locus_tag="VEQ16_06855"
     CDS             3021..4604
                     /locus_tag="VEQ16_06855"
                     /inference="COORDINATES: protein motif:HMM:NF013491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP/pyruvate-binding domain-containing protein"
                     /protein_id="HYP63588.1"
                     /translation="MSAFAPLFIGIPGHAKKLTPDIAGNKAAQLWRMSHLGLAVPPAF
                     VLPTTLCAAVNTGEAEALHALEHGLRKGIAALESVTGKGFGDARAPLLVSVRSGAAQS
                     MPGMLETILDVGLNAQTLRGLIQQTGNPRLAWDSYRRLLQMYAEVVLEVPPAGFEAAL
                     TALLRQEEVASEADLDSEALERLVQHFAALAPDVPDDPAEQLLRAARAVYRSWEGERA
                     REYRRLNRLEGLSGTAVTVQLMVFGNAGRGSGAGVAFSRNPASGAAEFYVDYLANAQG
                     EDVVAGRRPTGGAGALAASLPEVARQLEQGARRLEADYRDVQDIEFTVEQGKLFFLQT
                     RAAKRTPRAALRILVDFVAEGLLSPEEALQRADKIDLDQASETRFAEPAATVAQAIQA
                     APGVACGRVAFTAETAKALAAQGEPVILVRHDTSTEDVAGFAVAAGILTATGGRTAHA
                     AVVARQMGRVCLVGCGALRFTQTGAELAGDKLTEGEFLCLDGETGEISRGRREIISCL
                     PEAELAALAAWRATATVPA"
     gene            4713..>5707
                     /locus_tag="VEQ16_06860"
     CDS             4713..>5707
                     /locus_tag="VEQ16_06860"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HYP63589.1"
                     /translation="MDDIRPTAHVRPLPKSTEESSHPETRKLGLVMLSGVVIGSMIGG
                     GSFNLPANMAGAAGLGAIIIAWIVTFVGMYFLSNAFRILSDKRPDLKAGIYSYAQAGF
                     GPFAGFQMAWGYWLSSAFGNVAFAVLIMQILSYFFPVFGNGQNWPSIIGGSILIWVMF
                     AIVMSGVKRTAALNVLASFLNIVTITAALVVMAFFMTGDNFHFDVWGKAQGLGSVFGQ
                     VKSTMLVTLWVFIGIEGAVVISDRARKMSQVGPATFIGLGVCTVLYSLLSILPFGIMH
                     QSALSGLSNPSAAYVLQLVVGKWGAIFINVSLLVAVLSCWLAWTILVAELPYEGA"
BASE COUNT          911 a         1839 c         1985 g          972 t
ORIGIN      
        1 gattggtcgc cgccaggatc acgaggccgg ttcttgaatc aaagccgtcc atgtcgacga
       61 gaagctgatt gagggtctgt tccttctcgt catggctgcc tgcatagggg cctaatccac
      121 gcgcgcggcc gagcgcgtcg agctcatcga tgaaaatgat cgctggcgcc ttggaccttg
      181 cctgctcgaa caagtcacgc acgcgggcgg cgccgacgcc gacgaacatc tcgacaaatt
      241 ccgagccgga gatggagaag aagcgcaccc ccgcctcacc ggcgacggcg cgggccagca
      301 gcgtcttgcc cgtgccgggc gggccgacca gcagcacgcc cttggggata tgcgcgccga
      361 gccgcccata atcggcgggg gctttgagga aatcgaccag ctccttcagc tctgccttgg
      421 cctcatccac cccggcgaca tccttgaagc gcaccgggac gtcattctcg gcatagacgc
      481 gcgccttgct cttgccgacc gcgagcagcc cgccggcgcg cccgccgcca ccggccatga
      541 gataatagac gctgacaaac agcagcagcg gcagcagcca gcccagcagc gcggaaaacg
      601 cgcccgacga tgcggcgccg gagaagctga tattctcgtg cgccagcgtg gcggccagag
      661 cggggtcgac ccggttggtg acgaaatccg ccggttcgtt attctgcgga tgcttcagcg
      721 tgccgctgat gctgtcctga ttaatgacaa gattatccac cccgccggac tgcagcaggg
      781 tttggaagcg gctataggga atggtctgca cctgggtctg gccaacgctc gacatgaccg
      841 aaatgaagaa gaccagtgcg aatacggcac tgatgatgag cgggtagaag ccagggctga
      901 tgttgcgtga gggacggcgc gccacgatgt tcttcctgtt gaaacccggc gagctaaacg
      961 ccatcgaggc acgcgaacca tgatcaggat caagccctag tgaaatgcca aggctgaaat
     1021 gccgcgcctc aggcggttgc ctgccgtcat gaaaacttca tcttatacca tgatccagcg
     1081 caaacgcaca tccctccggc gggtctagca tcagccggta tggaggtggc gatgacggtg
     1141 aagcctgaaa tcatcagcgt gctcggcgag agcgatgtgc tgctgcccgg cctgatcagc
     1201 gcggcgctgg cggccaatga caggatcaaa ctacggctgt cgctgctgca ggcggcggcg
     1261 caggccgccc gtctgccggg gagcccgccg ccgcccttgc cgcaggatga cgcgctggcg
     1321 gcggaactcc cgcccggcgc gctggcccag gcccggctgg ccgaggcgca gaccctcttc
     1381 ctgcccggcg ccggcgcgct gctggccggg ctgcggcgcg atctcgccgc catgctggca
     1441 cccgtcgccg catccggcac agaggccgcc ggggatttcg cggcccgggc cgaggcactg
     1501 caacccgtct ttgaaaatgc ggccggcatg atcgcgctgg cgaagatcgg cgccctcacc
     1561 agcgccacgc gcgaaggcgg gccaaaattc catctgctgg tgatggatct gcacaaggcg
     1621 atcaaccagc tggccgccag cgcggcggcg gaaacgctgg acggcgccgc agtgcatggg
     1681 ctgacggcgg aggaccgggt ggccgtgcgc gccttcatgc gcgggctgca ccgcaccgcg
     1741 ccgctcgcct tcggccatcc cgggcttggc acaatggcgg tgcgcggccc ggcccatctc
     1801 accatccaga acgatatcgg cacgacggat gcgcatgtgc tcgtcgtgca tgtcacggat
     1861 gacagcgtca gcgtgaccta cacggatatt caccgtccgc gcgccaaatt cttcatcggc
     1921 atgttcgcag ggttcgcggt ggaatggacg ccgctcggcc agcgccaggc ggaagggctg
     1981 gaggaggagg cgttctatct catcagcgga cgtttcgcct tcacggtgcc cgaggcgcgg
     2041 gatgcgttcc tggagcatct cggctcaagg ctggtctttc tcatcgactg gaacaaggcg
     2101 cgcaaggcgc tgcagatttt tgtcggcaag aacgaggcga tcgggctgct gagctggtcg
     2161 gcttcgcagg actatgggca tcgcgccttc ctggagctgg gcggggcgga gctggtgtac
     2221 gaggccgtgc accgcgccgc cgccgggcgc atccgctatg gcgagcggct ggatgaagcc
     2281 ctgggcgagg cggaatgcgt ggcgtttctc cgccatacgc tgcgggaaac atcgctggga
     2341 ttgcaggccg ggcgcggggc gcggctgatc cgcgatgaga tccaggccga gctggcgcgg
     2401 cgcttcgaga ccgaggagag tgccgtgttc acgctgctgg tgcggcatct ggggcttacg
     2461 cgcggcctcg ccgagggcgt ggaggcggct ttggccgcgc ccgattccgg tttcgcccgc
     2521 cgcgccaagg cgatggaagc caaggccgac cgcctgaccg ccagcgcccg cgagctggcg
     2581 gcgcgacgca agggcgcggc ggtgctgcgg caggttatcg acgaggtgga gaacagcacc
     2641 gacacgctgg aggattgcgc gcatctgctg agcctcatgc cggcggccga aatgggccgg
     2701 cagcttgccc cgctggcaag catcgtgacc agctccgttt ccgccatggt gcgggccgtg
     2761 gaggcggcct cccgcatgcc ggacggccag cgcgccgacg ctacctcggc cctgcagggc
     2821 atagacgagg tggtgagcgc cgagcgcgag gccgataccg cccagcgcgc catcctggcc
     2881 gcgctgatga ccggcccctg cgccgatgcc cgcgccttgc tgctggggct ggagctggcc
     2941 aaggcgctgg aaggcgccac cgaccaatta tcgcatgcgg ccttcgcgct gcgcgaccgt
     3001 gttttagagg agctgtccgc atgagtgctt tcgcgccttt attcatcggc attcccggcc
     3061 acgccaagaa gctgacgccg gacatcgccg gcaacaaggc cgcgcagctc tggcgcatga
     3121 gccatctcgg cctcgccgtg ccgccggcct tcgtgctgcc cacgacgctc tgcgcggccg
     3181 tgaacacggg cgaggcagag gcgctgcatg cgctggagca tggtttgcgc aagggcatcg
     3241 ccgcgctgga atccgtcacg ggcaaaggct tcggcgatgc gcgcgcgccc ctgctggtct
     3301 cggtgcggtc aggcgcggcg caatccatgc ccggcatgct ggagaccatt ctggatgtgg
     3361 ggctgaacgc gcagaccctg cgcgggctga tccagcagac cggcaatccg cgcctggcct
     3421 gggacagcta ccggcgcctg ctgcagatgt atgccgaagt ggtgctggag gtccctcccg
     3481 ccggcttcga ggcagcgttg accgcgctgt tgcgccagga agaggtggcg agcgaggcgg
     3541 atctggattc cgaggcgctg gagcggctgg tccagcattt cgccgcgctg gcgccggacg
     3601 tgccggatga ccccgccgag cagctcctgc gcgccgccag ggcggtgtac cgctcctggg
     3661 agggcgaacg cgcccgcgaa taccggcggc tgaaccggct agagggcctc tccggcacgg
     3721 ccgtcaccgt gcagctgatg gtgttcggca atgccgggcg cggctcgggc gcgggcgtgg
     3781 cgttctcgcg caacccggcc agcggcgcgg cggaattcta cgtggattac ctggccaatg
     3841 cgcagggcga ggatgtggtg gccgggcggc gccctaccgg cggcgccggc gcgctggcgg
     3901 cttcgctgcc cgaggtggcg cggcagctgg aacagggcgc gcgccggctg gaggcggatt
     3961 atcgcgacgt gcaggatatc gagtttaccg tggagcaggg caaactcttc ttcctgcaga
     4021 cccgcgccgc caagcgcacg ccccgcgccg ctctgcgcat cctggtggat ttcgtggccg
     4081 agggcctgct ctcgccggaa gaggcgctgc agcgggcgga caagatcgat ctcgaccagg
     4141 ccagcgagac gcgctttgcc gaaccggccg ccacggtggc acaggccatc caagccgcgc
     4201 ccggcgtggc gtgcggacgt gtggccttca cggcggagac agccaaggcc ctggccgcgc
     4261 aaggcgagcc cgtgattttg gtgcggcatg atacctccac cgaggatgtc gcgggcttcg
     4321 cggtggcggc gggcattctc accgccacgg gcgggcgcac cgcccatgcc gccgtggtgg
     4381 cgcggcagat gggccgggtc tgcctggtgg ggtgcggcgc gctgcgcttc acgcaaacgg
     4441 gcgccgagct ggcgggcgac aagctgaccg agggcgagtt tttgtgcctc gatggcgaaa
     4501 ccggcgagat ttcccggggg cggcgcgaga ttatctcgtg cttgccggaa gccgagctgg
     4561 cggcgctggc cgcctggcgc gccaccgcca cggtgcctgc gtagttgctg ctggccgcaa
     4621 cgattttttt tgatagttga cgcacgtcaa ggcgaacgaa cgatccgtca tccatcttcc
     4681 ggccagctgt aaattcaacg ggagagccaa acatggatga catacgcccc acggcgcacg
     4741 tgagaccgct gccgaaatcg accgaagaga gttcgcatcc cgaaacgcgc aagcttgggc
     4801 tggtaatgct cagcggcgtc gtgatcgggt cgatgatcgg cggcggctcc ttcaacctgc
     4861 cggccaacat ggcgggcgct gccgggcttg gcgccatcat catcgcctgg atcgtgacgt
     4921 ttgtcggcat gtattttctg tccaatgcgt tccgcatcct gtccgataag cgcccggacc
     4981 tgaaagccgg catctattcc tacgcgcagg ccgggttcgg cccctttgcc ggcttccaga
     5041 tggcctgggg ctattggctg tcctcggcct tcggcaatgt cgccttcgcc gtgctgatca
     5101 tgcagatttt gagctatttc ttccccgtgt tcggcaatgg gcagaactgg ccttcgatca
     5161 ttggcggctc catcctcatc tgggtgatgt ttgccatcgt catgtccggc gtgaagcgca
     5221 cggcggcgct caacgtgctg gcgagctttc tcaacatcgt caccatcaca gccgcgctgg
     5281 tcgtgatggc gtttttcatg accggcgaca atttccactt cgacgtctgg ggcaaggcgc
     5341 aggggctggg cagcgtgttc gggcaggtga agagcaccat gctggtgacc ttgtgggtgt
     5401 tcatcggcat cgagggcgcg gtcgtcattt ccgaccgtgc gcgcaagatg tcgcaggtgg
     5461 ggcctgcgac cttcatcggc ctcggggtgt gcacggtgct gtattcgctg ctctccatcc
     5521 tgccgttcgg catcatgcat cagagcgcgt tgtcgggcct ctccaacccg tccgcggcct
     5581 atgtgctgca gctggtggtc ggcaaatggg gtgcgatttt catcaatgtg tcgctgctcg
     5641 tcgcggtgct gagctgctgg ctggcctgga ccatcctggt ggcggaactg ccctatgaag
     5701 gcgccaa
//
LOCUS       DASQCV010000455         1910 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1426538, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000455 DASQCV010000000
VERSION     DASQCV010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1426538"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..452)
                     /locus_tag="VEQ16_06865"
     CDS             complement(<1..452)
                     /locus_tag="VEQ16_06865"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HYP63590.1"
                     /translation="MLWSVNIGSIAGTAIKIHITFLMFLVWIFAAGWASGGAEAAMAS
                     LIFMVLLFACVLAHEFGHIFTARAFGVATPDVILLPIGGVARLERIPEKPSEEFLIAV
                     AGPLVNVVIALVLMVGMRAHLDAQNLAAVESTSVSLVDRLAEVNLFLAL"
     gene            678..971
                     /locus_tag="VEQ16_06870"
     CDS             678..971
                     /locus_tag="VEQ16_06870"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019015651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HYP63591.1"
                     /translation="MVSKLSREARSAALARLAGWQEVSGRDAIAKTFVFADFNEAFGF
                     MTRAALVAEKMDHHPEWSNVYKTVVVTLSTHDAGGVTARDIALAEAMERIAAA"
     gene            1028..1450
                     /locus_tag="VEQ16_06875"
     CDS             1028..1450
                     /locus_tag="VEQ16_06875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014248938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkvA family protein"
                     /protein_id="HYP63592.1"
                     /translation="MISTPYGMDGTDTGGNGSADEANAARDEARVRRGFWPKLRRHAA
                     QLPFAEDLVAAYYCAFDRRTPRRVQVILLGALAYFVLPFDFVPDMLPIIGFTDDAAVL
                     ATAIQVVAAHITPEHRNAARRLLVQAGRRQDDTHAQAS"
     gene            1617..>1910
                     /locus_tag="VEQ16_06880"
     CDS             1617..>1910
                     /locus_tag="VEQ16_06880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63593.1"
                     /translation="MLHRHQTVLALAAAIAVACLGSIQANAQAQPAKPPAAKPAAPPA
                     AAAAPAPQPTLLGQFGDWGAYTASPGGKKVCFALAKPANSKTTPPNRPRDPAYM"
BASE COUNT          349 a          629 c          615 g          317 t
ORIGIN      
        1 agagccagga acagattgac ctcagccagg cggtcgacca gcgagacgct ggtgctctcc
       61 acggcagcga ggttctgggc atccaggtgg gcgcgcattc ccaccatcag caccagtgcg
      121 atcacgacgt tgaccagcgg gccggcaacg gcgatcagga actcctcgct cggcttttcc
      181 ggaatgcgct cgagccgcgc cacgccgccg atcggaagca ggatcacgtc cggcgtcgcc
      241 acgccaaagg cgcgcgcggt gaagatgtgg ccgaattcgt gggcgagcac gcaggcaaac
      301 agcagcacca tgaagatcag gctggccatc gccgcttcgg ccccgccgga ggcccagccc
      361 gccgcgaaaa tccagaccag gaacatgaga aaggtgatgt ggattttgat cgccgtaccg
      421 gcgatcgagc cgatgttcac cgaccacagc atggcggttc tccagcaacc gaatgcgttt
      481 tgcgcacgcc acagataaga tggccggggt tcgttggcca ggggaggagg cggcttcagg
      541 gcggcgaccg aagtagcaag gcattgcagg cgcggcatcg gcacggcgtt gcaggcatag
      601 tatcgacctt gcgtcgattc ggcgcgcgtg acttatactt gcggctcgtc tacctgcggc
      661 tcattgcgag ggttgccatg gtttcgaagc ttagtcgtga agcgcgcagc gccgcactcg
      721 cccggctcgc cggctggcag gaggtgagcg ggcgcgatgc catcgccaag accttcgtct
      781 ttgccgattt caacgaggcg ttcgggttca tgacccgcgc tgccctcgtt gcggaaaaga
      841 tggaccacca tccggagtgg tcgaacgtct acaagaccgt cgtggtgacg ctttcgaccc
      901 acgatgccgg cggggttacc gcgcgcgaca tcgcgctcgc cgaggcgatg gagcgcatcg
      961 ccgccgcctg agcgccttgc atttggcagt cggcagcccc acctgttgcg gcggcagagg
     1021 caggcaaatg atcagcacgc cctacgggat ggacggcacc gacaccggcg gcaatggctc
     1081 cgcggacgaa gccaatgccg cgcgggacga agcgcgggtg cggcgcggct tctggccgaa
     1141 gctgcggcgc catgcggcgc agctgccatt cgccgaagac ctcgtcgccg cctattactg
     1201 tgcgttcgac cgccggacgc cccgccgcgt ccaggtgatc ttgctggggg cgcttgccta
     1261 tttcgtactg ccgttcgatt ttgtcccgga catgctgccg atcatcggct tcaccgacga
     1321 tgcggcggtg ctggcgactg cgatccaggt ggtggccgcc catatcacgc ccgaacaccg
     1381 caatgccgca cgccggctgc tcgtccaggc aggccggcga caagacgata cgcacgcgca
     1441 agcgagctga aaaaggcctg ccgccggcaa gccacggggc gttgcggccc tgtttttttg
     1501 cgaatcgggt tataatgcgg cgaagtgccc tcacattgcc actttgctga acaaacgcat
     1561 ttatttaggt tacagtcagg tgacctgcag gtgagtttca catgggttgc gcgaccatgc
     1621 tccatcgcca tcagactgta ttggctctgg ctgccgcgat cgcggtggca tgcctcggtt
     1681 ccattcaggc caatgcccaa gcacagccgg ccaagccgcc ggcagcgaaa cccgctgcac
     1741 ccccggcggc cgcagcagca cccgcgccac aaccgacgct gctcggccag ttcggcgatt
     1801 ggggcgccta caccgcctcc cccggaggca agaaggtgtg cttcgccctc gccaagcccg
     1861 cgaattcgaa gacgactccg ccgaaccggc cgcgcgatcc cgcctacatg
//
LOCUS       DASQCV010000456         3945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2420171, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000456 DASQCV010000000
VERSION     DASQCV010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3945
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2420171"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            12..494
                     /locus_tag="VEQ16_06885"
     CDS             12..494
                     /locus_tag="VEQ16_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007282449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HYP63594.1"
                     /translation="MTTRVFTSPLFLGFDHLEQMIERASKNSSDGYPPYNIEQLSPIS
                     LRITLAVAGFTMDDLQITLEDNQLVIRGRQSDDGQGRVFIHRGIAARQFQRAFVIAEG
                     IEVKGAWLDNGLLHVDLVRPVPQPVVKTIPISRGQSKAVTPARTVEGAPHGAPRGTED
                     "
     gene            611..865
                     /locus_tag="VEQ16_06890"
     CDS             611..865
                     /locus_tag="VEQ16_06890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1150 family protein"
                     /protein_id="HYP63595.1"
                     /translation="MNIKNHDGTTNFIPGTVLDIHHISQAELAQLGLEEIAFVKPVMT
                     ESGPAFAIHAADGTPMAIASDINLASAAIIQHDMRPSLVH"
     gene            1369..1989
                     /locus_tag="VEQ16_06895"
     CDS             1369..1989
                     /locus_tag="VEQ16_06895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019013604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HYP63596.1"
                     /translation="MSLTLYSNPMSRGRIVRWALEEIGAPYDFRTMDYGPPMKAAEFC
                     ALNPMGKIPVLCHDGVTVTETAAILAYLADYFPQAELAPPPGSTERGAYYRWLFFGAG
                     PVEAAITNQALGVEVPPDKAVFVGYGSFALVLDVLEQAVSAGPYLAGGKFSAADIYVA
                     SQLGFGLRFGSIAARPAFQDYTTRMMSRPAAQRANALDDALMPAQT"
     gene            2047..2709
                     /gene="hisG"
                     /locus_tag="VEQ16_06900"
     CDS             2047..2709
                     /gene="hisG"
                     /locus_tag="VEQ16_06900"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007003974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HYP63597.1"
                     /translation="MSLVIALPKGRILDEAGPLLARAGIFPEADYADESSRRLRFPTN
                     HPELDAIRVRSFDVATFVAFGAAQLGICGGDVLMEFDYPEVYAPLDLGIGKCRISVAE
                     PKDDVGNTDFARTSHLRVASKYPNVAKKHFAARGVQAEIVALNGSMELAPGLGLSRVI
                     VDLVQTGNTLKANGLVETDIIAQVSSRLIVNRIALKTRPDEIGTWIEAFRKALAPMEP
                     AK"
     gene            2706..>3945
                     /gene="hisD"
                     /locus_tag="VEQ16_06905"
     CDS             2706..>3945
                     /gene="hisD"
                     /locus_tag="VEQ16_06905"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010508115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HYP63598.1"
                     /translation="MRLLTTRQANFEAEFAKLMARAVTAPQLQETVAGIIATVRAKGD
                     DALLNYTVRFDRHDLGDASAMRVTQDEVKAAVAETPRKLREALALAAKRIERFHLAQM
                     PRDLEFTDEAGATTGLRWGPLDAVGLYVPGGKASYPSSVLMNAIPAQVAGVRRLVMTV
                     PAPDGVLNPLVLAAAHQAGVSEIYRIGGAQAVAALAYGTQTIRPVDRIVGPGNAYVAE
                     AKRQVFGRTGIDSIAGPSEVLILADEDNDPEHIAIDLLAQAEHDEDAQSILITDSGTL
                     ASAVEGAVGAALDRLPRADIAKVSWARHGAIILVQNWDEGEILANRIAAEHVQLMVAE
                     PFRLFPKIRHAGAVFLGKSTPEAIGDYVAGPNHVLPTSGTARFASGLSVYDFLKRTTY
                     VSLSPAALEAIGPAAVTIAEA"
BASE COUNT          754 a         1294 c         1201 g          696 t
ORIGIN      
        1 gagccctgac tatgacgaca cgagtgttca catcgccact ttttctcggg ttcgaccatc
       61 tcgagcagat gatcgagcgc gcctcgaaaa attcttccga tggttacccg ccttacaaca
      121 tcgagcagct cagcccgata tcgctgcgca tcacgcttgc cgtggccgga ttcaccatgg
      181 acgacctaca aattacgctt gaggataatc agttagtaat tagagggcgc cagagtgacg
      241 acggtcaggg ccgtgtcttc atccaccgtg gcatcgcggc ccggcaattt cagcgggctt
      301 tcgtgatcgc tgaaggaatc gaggtgaaag gcgcgtggct cgataatggc ctgctgcatg
      361 tggatctggt ccggccggta ccccagccgg tggtgaagac catccccatc agccgcggcc
      421 aaagcaaggc tgtgacgccc gcccgtaccg tggaaggagc cccacacgga gccccgcgcg
      481 gcacggaaga ctgatccagc aaaatcgctg gatgcgaagc gataatatac gcaagactcg
      541 acgcaaataa gacataatgc cgctgcatgt tgaggctata gccagatggg cggcatgaaa
      601 ggattgttcg atgaacatca aaaatcatga cggcacgacc aatttcattc ctggcaccgt
      661 gctcgatatt catcacatct cgcaggccga gctggcgcag ctagggctgg aggagatcgc
      721 cttcgtgaag ccggtcatga ccgagtccgg cccggctttc gccatccatg cggcagacgg
      781 cacgccgatg gcgatcgcct ctgacatcaa tctcgccagt gctgccatca tccagcacga
      841 tatgcggccc agcttggtgc actgatcccc gcgccgccag cgccgctttg ccccctaacc
      901 acggcaaagc ggtagggggc ggtggaaatg gcgccggacc agcatcctgg agcaatttga
      961 agctggagga gatatttccg gatttcacgg ccctcgaggc cagcaatttc aaaggagtgg
     1021 tctgcggcaa ggcggcgaga cagcgccgcc cttcgggccc tcgggcaaat ttgatcttgc
     1081 ccggattctg gccattatcg actggccatc atccacacag tggagcggga aaaacaggcc
     1141 tgggaaaatt ggttcgccag ccacgaaatc acgccgatgc gcctggatta ccggcagatc
     1201 gaaaccgata taaacgccgt gctgcggctg atcgccacca ggatgaacct gcctctgcgg
     1261 accgggccgc cgcagggcgt ggagatgaaa aagcccggcg acagaccagc gcggaatgga
     1321 cggaaaaggt gcaaagcata ttttcaatct gagctaggga gacacgccat gagcctgacc
     1381 ctctacagca acccgatgtc gcgcggccgc atcgtccgct gggcgctgga ggaaatcggc
     1441 gctccctatg atttccggac catggattat gggccgccca tgaaagcggc ggaattctgc
     1501 gccctcaacc cgatgggcaa gatccccgtc ctctgccatg acggcgtgac cgtcaccgaa
     1561 accgcggcca tcctcgccta tctggctgat tattttcctc aggcggagct tgccccgccc
     1621 cctggcagca ccgagcgcgg cgcttattac cgctggctgt tcttcggcgc cggcccggtg
     1681 gaggccgcca tcaccaacca agccctcggc gtggaggtgc cgcccgacaa ggctgttttt
     1741 gtcggctatg gctccttcgc cctggtgctc gacgtgctgg aacaggcggt cagtgccggc
     1801 ccctatctgg ccggcggcaa attttccgct gcggacatct atgtcgcctc gcagctcggc
     1861 ttcggcttac gcttcggcag catcgcggcg cgcccggcat ttcaggatta taccacgcgc
     1921 atgatgtccc gccccgccgc gcaacgcgcc aatgcgctcg acgatgcgct aatgccggcc
     1981 cagacttagc ggggcctccc caaccgggcc tagccactct gcggcgcgga tggtaagccg
     2041 cgcgccatgt cgctcgttat cgctctgccc aaaggccgta tcctggatga ggccggtcca
     2101 ctactggctc gcgccgggat tttccccgag gcggactatg ccgacgagtc gtcccgccgc
     2161 ctgcgtttcc ccaccaacca tcctgagctg gacgccatcc gcgtccgctc cttcgatgtc
     2221 gccaccttcg tcgccttcgg cgcggcgcag ctcggcattt gtggcggcga tgtgctgatg
     2281 gagttcgatt atcccgaggt ctatgccccg ctcgacctcg gcatcggcaa atgccgcatc
     2341 tccgtggccg agccgaagga tgacgtgggc aatacggatt tcgcccgcac ctcgcatctg
     2401 cgcgtggcca gcaaataccc caacgtggcc aagaaacatt tcgccgcgag gggcgtgcag
     2461 gcggaaatcg tggcactcaa cggttcgatg gaactggcac ccggcctcgg cctgtcgcgt
     2521 gtcatcgtcg acctggtgca gaccggcaac accttgaaag caaacgggct tgtcgagacc
     2581 gatatcatag cacaggtatc ttcaaggctt atcgtcaacc gcatcgcgct gaagacaagg
     2641 cccgatgaga tcgggacctg gattgaggcg ttccgcaagg cgctcgcccc catggaaccg
     2701 gcaaaatgag gcttctgacc actcgccagg cgaatttcga ggcggaattc gccaagctga
     2761 tggcgcgggc ggtcacggcg ccgcaactcc aggaaaccgt ggccggcatc atcgccacgg
     2821 tgcgcgccaa gggcgatgac gcgctgctga attataccgt gcgattcgac cgccatgatc
     2881 tgggcgatgc gagcgccatg cgggtaacgc aggacgaggt gaaggcggcc gtggcggaga
     2941 cgccgcgcaa attgcgcgag gcgctggccc tggcggccaa gcggatcgag cgtttccacc
     3001 ttgcccagat gccgcgtgac ctggaattca cagacgaagc aggtgccacc acagggctgc
     3061 gctggggacc gctggacgcc gtgggactct atgtaccggg cggcaaggcc tcctacccct
     3121 cctcggtgct gatgaacgcc attcccgccc aagtggctgg ggtaaggcgc ctggtgatga
     3181 ccgtgcccgc cccggatggt gtgctcaacc cgctggtttt ggccgccgcc catcaggccg
     3241 gtgtgtcgga aatctaccgc atcggcggcg cccaggccgt ggcggccctc gcctatggca
     3301 cccagaccat ccgcccggtg gaccgcatcg tcgggccggg caatgcctat gtggccgagg
     3361 ccaaaaggca ggtattcggc cggacgggca tcgattccat cgccggcccg tcggaagtgc
     3421 tcatcctcgc cgatgaggat aacgatcccg aacacatcgc catcgatctg ctggcccagg
     3481 ccgagcatga cgaggacgcg caatccatcc tcatcacgga tagcggcacc ctggccagcg
     3541 ccgtggaagg cgcggtgggc gcggccctgg acaggctgcc gcgcgccgac atcgccaagg
     3601 tgagctgggc ccgccatggc gccatcatcc tggtgcagaa ctgggacgag ggcgagattc
     3661 tggccaaccg catcgccgct gagcatgtgc agctgatggt cgccgagccg ttccggctgt
     3721 tccccaaaat ccgccatgcc ggcgcggtct tcctcggcaa atccaccccc gaggccatcg
     3781 gcgattacgt ggccggcccc aaccacgtgc tgcccacctc cggcacggcg cgcttcgcct
     3841 ccgggctttc ggtgtatgat ttcctcaagc ggaccaccta tgtctcgctc tcgcccgcag
     3901 cacttgaggc catcggcccg gccgccgtaa ccatcgcgga agccg
//
LOCUS       DASQCV010000457         2083 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_430386, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000457 DASQCV010000000
VERSION     DASQCV010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430386"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            64..396
                     /locus_tag="VEQ16_06910"
     CDS             64..396
                     /locus_tag="VEQ16_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007400205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HYP63599.1"
                     /translation="MRESRMTRSELIAGLAEDNPHLTVAEVERIVAALFDEMTAALAR
                     GERVELRGFGAFTVKRRQARAGRNPRTGETVDVAQKTVPFFKAGKELRERINKSGAPP
                     VAKKKNAE"
     gene            420..680
                     /locus_tag="VEQ16_06915"
     CDS             420..680
                     /locus_tag="VEQ16_06915"
                     /inference="COORDINATES: protein motif:HMM:NF018058.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapA
                     domain-containing protein"
                     /protein_id="HYP63600.1"
                     /translation="MAGFLAILLLVVFVLSNRVPVLLGMWPFGTATVWLGPVMVGALA
                     VGVLLGLLAHLPTHISLRRRARNAEKRVAQLTSPQDSAKPPA"
     gene            677..1363
                     /gene="pyrF"
                     /locus_tag="VEQ16_06920"
     CDS             677..1363
                     /gene="pyrF"
                     /locus_tag="VEQ16_06920"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HYP63601.1"
                     /translation="MTKKLIAAIDTPELDRASDLVRNLSSHCGMVKLGLEFFLRHGPA
                     GFAQAVQGNPVFLDLKLHDIPNTVAGAVRSLLPLGADMLTIHAVGGAKMIAAAAEVAH
                     TAAQRPKILAVTVLTSLDAAGLAEIGVAGGTAQQVLRLARLALENGADGLVCSAHEIS
                     LLRDAFGAKPILVVPGIRPAGAALGDQARVMTPEQAVQAGADYIVVGRPITEAADPAA
                     AAAAIAATIR"
     gene            1360..1986
                     /locus_tag="VEQ16_06925"
     CDS             1360..1986
                     /locus_tag="VEQ16_06925"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004640 - phosphoribosylanthranilate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HYP63602.1"
                     /translation="MSLVKICGINSPAAFDAAVSGGADYVGFVFFPPSPRYVTPAEAS
                     CLSTRHEGAKLLRVGLFVNPGFDEVDSILQAVSLDILQVHASPASVAALRDRFGRPVW
                     RQIGVTSEEDFPGQDEIADGYVVEAKPPPGATRPGGNAVQADWELLSRFRPAKPWLLA
                     GGLRPENVAEALRVTGAPGVDVSSGVETAPGRKSPELIRAFIEAARAG"
BASE COUNT          332 a          629 c          743 g          379 t
ORIGIN      
        1 cttaaaaaaa acgacctaac acaaacgttt attgaccaaa accgggcatc ctggcatcgt
       61 tacatccggg agagccgtat gactcgttcg gaattgattg cagggctggc ggaagacaat
      121 ccgcacctga ccgtcgcgga agttgagcgc atcgttgccg cattgttcga tgagatgacc
      181 gccgcgctag cacgcgggga gcgtgtggag ttgcgcggct tcggcgcctt taccgtgaaa
      241 cgccgccagg cccgtgccgg gcgcaacccg cgcacgggtg aaaccgtgga tgtcgcgcag
      301 aaaaccgtgc ccttcttcaa ggcgggcaag gaactgcgtg agcggatcaa taaatccggg
      361 gcgccgccgg tcgcgaagaa gaaaaacgcg gagtaagggt tctgagattt atcaagctat
      421 tggccggatt cctggccatt ctgctgttgg tggtgttcgt cctctccaac cgtgtgccgg
      481 tgttgctggg catgtggccg tttggcaccg cgacggtgtg gctcgggccg gtgatggtcg
      541 gagcgcttgc ggtgggcgtg ctgctcgggt tgctggcgca tctgccgacg catatttcgc
      601 tccgccgccg tgcgcgcaat gccgagaagc gtgtggcaca gctgaccagc ccccaggatt
      661 ccgctaaacc ccccgcatga cgaaaaaact gatcgcggcg atcgacacgc cggagctgga
      721 ccgcgcgtcc gacctcgtgc gcaatttgtc ctcgcattgt gggatggtga agctggggct
      781 tgagtttttt ctccgtcatg gcccggcggg attcgcgcag gccgtgcaag gcaaccctgt
      841 ttttctcgac ctcaagctgc acgatatccc caacacggta gcaggcgcgg tgcgctcgct
      901 gctgccgctt ggggcggata tgctcaccat ccatgccgtc ggtggcgcga aaatgattgc
      961 agcggcggca gaggtggcac acacggcggc gcagcggccg aaaatcctcg ccgtgacggt
     1021 gctcaccagc ctggatgcgg cggggttggc cgaaatcggc gtggcgggcg gaacggcgca
     1081 gcaggtgctg cgcctggcgc gcctggcgct ggaaaatggc gcggacgggc tggtctgctc
     1141 ggcgcatgag atttcgctgc tgcgcgacgc attcggcgcc aagcccatcc ttgtggtgcc
     1201 cggtattcgc ccggcggggg cggccttggg cgaccaggcg cgggtgatga cgccggagca
     1261 ggcggtgcag gcgggggcgg attatatcgt cgttggccgg ccgatcacgg aggccgccga
     1321 tccggccgcc gccgccgccg ccattgcggc caccatccga tgagcctggt caaaatctgc
     1381 ggcatcaaca gcccggctgc gtttgacgcc gcggtatcgg gcggggcgga ttatgtgggt
     1441 ttcgtgtttt tcccgccctc gccgcgctat gttaccccgg ccgaagcttc atgcctgtcc
     1501 acgcggcatg aaggagcgaa gctactgcgg gtggggctgt tcgtcaatcc gggattcgat
     1561 gaggtcgatt ccatattgca ggcggtctcg ctcgacatcc tgcaggttca tgccagcccg
     1621 gcttcggtgg cggcgctgcg cgaccgcttc ggccggccgg tctggcgcca gatcggcgtg
     1681 acgtcggaag aggattttcc ggggcaggac gagatcgcgg acggctatgt cgttgaggcc
     1741 aagccgccgc cgggcgcgac ccggccgggc ggcaatgcgg tgcaggcgga ttgggagctg
     1801 ctctcgcgct tccgcccggc caaaccctgg ctgttggcgg gcgggttgcg gccggagaat
     1861 gtggccgagg cgctgcgcgt tactggcgcg ccgggcgtgg atgtatcctc aggcgtggag
     1921 acggcgccgg gcaggaagtc cccggagctg atccgcgcct tcatcgaagc cgcgcgcgcg
     1981 ggctaatcag cgggtgcggg ctggggcgtg ggacgccgcc ttgtcagcag ccccgccatg
     2041 cggccgagcg cgcgggtcca gattttatcc agccaagcca agg
//
LOCUS       DASQCV010000458         3052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1426917, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000458 DASQCV010000000
VERSION     DASQCV010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3052
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1426917"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1078)
                     /locus_tag="VEQ16_06930"
     CDS             complement(<1..1078)
                     /locus_tag="VEQ16_06930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63603.1"
                     /translation="MPDHAAPQSQITPVPGWTEFLDALRDLPERILARLPEAQQQDSQ
                     LRQEAARLALSALAAGTLDALASDPDHPVFVPQINNYITLGQPNADTNYRSCKITPGG
                     TYRLRGRRGNMNQANIAEAGPRPKQVEGSVNLGAPRPVHNINALSVDAQGRYDVILSP
                     TRPDGYTGDWWQLDPTSNALLVRLVGSAWGEEIEPTLSIERLDISAPRPRRPAAVLEA
                     NLRGIAPFASFIAPLLVDRPEKLRAEGFVNKLKAVDFSQMGGLKGQFYYEGAFELADD
                     EALIIETTVPETYVYRSLILTSDIYETIDWYNNHSTLNGAQAEVDSDGILRIVVSARD
                     PSVPNWLDTSGYRTGVIQGRWVDCS"
     gene            complement(1224..2399)
                     /locus_tag="VEQ16_06935"
     CDS             complement(1224..2399)
                     /locus_tag="VEQ16_06935"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HYP63604.1"
                     /translation="MSTTIETQAIATAESVIAEASRRTGLTDFGDPAILDGLTRLLKA
                     YAEEAGFTERGYQGAIENVTATLANRMRVEDYLKQHPELLDKPVEKPLFLFGLPRTGT
                     TLAINLLASDPARRAFLRWEAFDSVPPPKPEELHAGPRFQLAQDKIDMSMKYVPQISA
                     IHHEDGDSPTECQFSMSPSYLAQVYEAMAHIPSYRNWFLYEADYLPAFRYQKRLFQLL
                     QANTGGRWTLKNPWHPLYLDALTTVYPDAQLVMTHRDPAEVVGSACSLIETVRKLTAE
                     KVDPIQIGKDQTALFELMIERVNKFHDKHGPDAIHDVQYADVMKNPIGTVRGIYTRFN
                     EPFTPAAEAAMQAYMANNQKGKHGKHEYDLESYGFTKQGILERFGDYIERYNIPVKR"
     gene            complement(2564..>3052)
                     /locus_tag="VEQ16_06940"
     CDS             complement(2564..>3052)
                     /locus_tag="VEQ16_06940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63605.1"
                     /translation="FRRQDKRVAQITTVGAGTTHVSEHPWRFLPMALAFWYLLGPAGT
                     ALAGYLPGRKLMLGADLPAGVYWQWRKWCTSRDFFRSEFGNILPMPDFQHQGAALRLL
                     AMADDVFVPPPAVQRYAALFPQAAYRVLRPDEFGLASLRHVEIFSARNAAAWPTLLGL
                     PV"
BASE COUNT          508 a          859 c         1112 g          573 t
ORIGIN      
        1 tggagcaatc cacccagcgc ccctggataa cgccggtgcg gtagccggag gtatccagcc
       61 agttggggac gctggggtcg cgcgcggaga cgacgatgcg gagaatgccg tcgctatcca
      121 cctctgcctg ggcgccgttg agggtgctgt ggttgttgta ccagtcgatc gtttcataga
      181 tgtcgctggt gaggatgagt gagcggtaga cataggtttc cggcacggtg gtctcgatga
      241 tcagcgcctc gtcatccgcc agctcgaagg cgccctcgta atagaactgg cctttcagcc
      301 cgcccatctg cgagaaatcc acggccttca gcttgttgac gaaaccttcc gcgcgcagct
      361 tctccgggcg gtcgacgagc agcggggcga tgaagctggc gaagggtgca atgccgcgca
      421 gattggcctc cagcaccgcc gcgggacggc gcgggcgggg cgcagaaata tccaggcgct
      481 ctatggagag ggtgggctcg atttcctcgc cccaggcgga gccgacgagg cgcaccagca
      541 gtgcgttgga ggtggggtcg agctgccacc aatcgcctgt atagccgtcc gggcgggtgg
      601 ggctgaggat gacgtcgtag cgtccctggg catccacgct gagcgcgttg atgttgtgca
      661 ccgggcgggg cgcgccgaga ttgacgctgc cttccacctg tttcgggcgt ggcccggcct
      721 cggcgatatt ggcctggttc atgttgccgc ggcggccgcg caggcggtag gtgccgccgg
      781 gcgtgatctt gcaggagcgg taattcgtat ctgcgttggg ttggccgagc gtgatgtaat
      841 tgttgatctg cggcacgaag accgggtggt cggggtcgct ggccaaggca tcgagcgtgc
      901 cggccgccag ggccgacaaa gcgaggcgtg cggcttcctg gcgaagctgc gagtcctgtt
      961 gctgtgcctc gggcaggcgg gcgaggatgc gctccggtag gtcgcgcagc gcgtcgagaa
     1021 actccgtcca gccgggcacg ggcgtaattt ggctctgggg ggcggcgtga tcaggcattg
     1081 tagttatctc ccataattta tctagattta taatgcgcac aaccgggccc tgcagccagc
     1141 tccctttgca tcgccggcgg gacataggct gcgcgggcgg gacatgaaaa cggccccgtc
     1201 ctggcggagg gggccgtgtg gtttcagcgc ttcaccggga tgttgtagcg ttcgatatag
     1261 tcgccgaagc gctccaatat gccctgcttg gtgaagccgt agctttccag gtcgtactcg
     1321 tgcttgccgt gcttgccctt ctggttgttc gccatatagg cctgcatggc agcctcggcg
     1381 gccggcgtaa aaggctcgtt gaagcgggtg tagatgccgc gcacggtgcc gatgggattc
     1441 ttcatcacgt cggcatattg cacatcgtgg atggcgtccg gcccgtgctt gtcgtggaat
     1501 ttgttcacgc gctcgatcat cagctcgaag agcgccgtct ggtccttgcc gatctggatc
     1561 gggtcgacct tctcggcggt gagcttgcgc acggtctcga tgaggctgca ggcgctgccc
     1621 accacttccg ccgggtcgcg atgcgtcatg acgagctgcg cgtccgggta aacggtggtg
     1681 agcgcgtcca gatacagcgg atgccaggga tttttcagcg tccagcgtcc gcccgtattg
     1741 gcctggagca gctggaacag gcgcttctgg tagcggaagg cggggagata atcggcctcg
     1801 tacaggaacc agttgcggta ggaggggatg tgcgccatcg cctcatacac ctgggcgaga
     1861 tagctcggcg acatggagaa ctggcactcg gtcgggctgt cgccatcctc gtgatgaatg
     1921 gccgagatct gcggcacgta tttcatcgac atgtcgatct tgtcctgtgc cagctggaag
     1981 cgcgggccgg catgcagctc ctcgggcttg ggcgggggta cggaatcaaa cgcttcccag
     2041 cgcaggaagg cgcggcgggc ggggtcggag gccaggaggt tgatggcgag cgtggtgccg
     2101 gtgcgcggca ggccgaacag gaagagcggc ttctccacgg gcttgtccag cagctccggg
     2161 tgctgcttga ggtaatcctc cacccgcatg cggttggcga gggtggcggt gacgttctcg
     2221 atggcgccct ggtagccgcg ctcggtgaag ccagcctctt ccgcataggc cttcagcagg
     2281 cgggtgaggc cgtcgaggat ggcgggatcg ccgaaatcgg tgaggccggt gcggcggctg
     2341 gcctcggcga tgacgctctc ggcggtggcg atggcttggg tttcgatggt ggtgctcaac
     2401 gtgacgtttc cttggcggcc gggcaatttt ggagatgcgc ccgattggtc aaaatcggcc
     2461 caaagcgatg ggttgatgac gcgccgcggt caagaccaag ttaagggggc ggcaccggaa
     2521 gcggcctgat ctgatgagaa tggccagaat tggccagcgc cgcttatacc ggcagcccca
     2581 ggagggtggg ccaggccgcc gcgttgcgcg ccgaaaatat ctcgacatga cgtagcgagg
     2641 ctaggccgaa ctcatcgggg cgcagcacgc ggtacgccgc ctggggaaac aaggcggcat
     2701 agcgctgcac ggcgggtggc gggacgaaga cgtcgtccgc catagccagg agccgtaggg
     2761 cggcgccctg gtgctggaaa tcgggcatgg gcaggatatt gccaaactca ctgcggaaaa
     2821 aatcgcggct cgtgcaccat ttgcgccatt gccaataaac accggcgggc aaatcggcgc
     2881 cgagcatcaa tttccggccg gggagatagc cggcgagtgc cgtgccggcg gggccgagca
     2941 gataccagaa ggccagggcc atgggcagga agcgccaggg atgttccgag acatgggtgg
     3001 tgccggcgcc gaccgtggtg atttgcgcca cgcgcttgtc ctggcggcgg aa
//
LOCUS       DASQCV010000459         3195 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2420321, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000459 DASQCV010000000
VERSION     DASQCV010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3195
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2420321"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..513)
                     /gene="rnhA"
                     /locus_tag="VEQ16_06945"
     CDS             complement(55..513)
                     /gene="rnhA"
                     /locus_tag="VEQ16_06945"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HYP63606.1"
                     /translation="MASDVAETLVEIWTDGGCKPNPGPGGWGAILRYKGTERELSGAE
                     ADTTNNRMELTAAAEALTALTRPCKVRLHTDSEYLKNGITRWHTGWVRKNWRNAAGDP
                     VKNMDLWRRILDAAKPHEIEWVWVRGHSGDVMNERADVLATQAREKLERG"
     gene            complement(503..1462)
                     /locus_tag="VEQ16_06950"
     CDS             complement(503..1462)
                     /locus_tag="VEQ16_06950"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012227459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HYP63607.1"
                     /translation="MAVYTEVTDEALTEFLTLYDIGTLRAFRGIAEGVENSNYTLTTS
                     GGDFILTLYEKRVNPEDLPWFLGLMEHLAAQGLSCPLPVRARDGHNLNPLAGKIAAIT
                     TFLPGIWPRRVLIDHCEPLGAALAKLHLAGQGFAPTRKNALGPEGWGPLLQKCLPQAD
                     QVMAGLGEELTDWLEQIIAAWPQGLPVGHIHADLFPDNVFFLDGKISGLIDFYFACTD
                     IYAYDVAVCLNAWCFERDFSFNQTKSRALLRGYAAHRKLNPAETDALPVLAQGAAMRF
                     LLTRLYDWLNTPSGALVTPKDPLDYYRRLRFHRAARDASAYGV"
     gene            1507..2082
                     /locus_tag="VEQ16_06955"
     CDS             1507..2082
                     /locus_tag="VEQ16_06955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63608.1"
                     /translation="MKNFRLLILAALLPLIGCSGGPNPPPAGQAQAQVHAKRGPAVFY
                     CPNPAVLQQAQTATYFQPGRLDVGGRVSTAQVSIVSGTCQFEKSKNAVLMTINASFLA
                     DNGPANNFAPLALPWFVAITAEDNSIIQKINYTQILKFDGNSSTTTATAKPVKVELPN
                     TPDTQNLQILVGFQESPDQLAYAAAHPEAAP"
     gene            2179..>3195
                     /locus_tag="VEQ16_06960"
     CDS             2179..>3195
                     /locus_tag="VEQ16_06960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_043509192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYP63609.1"
                     /translation="MLSSLTRAIFGTSNDRALKGFKRRVAAINALEPQFQALDDAALA
                     AKTAEFKDRLEKGETLDDLLVEAFAVVREASTRVLGMRHFDVQLIGGMVLHQGRIAEM
                     KTGEGKTLVATLAVYLNALSGQGVHVVTVNEYLAKRDAEQMGRLYGFLGLSTGVIIPN
                     KEEPERRESYAADVTYGTNNEFGFDYLRDNMKYRLEDMVQRPFNFAIVDEVDSILIDE
                     ARTPLIISGPSDEPTALYAQVDEIVAVFLARGQVAEDGKHEYYEKDEKARTVTMTEDG
                     AEVVETMLQQAGLLSGGLYDLTNISLVHHVQQSLRARTLFARDVDYIVREDRIVIIDE
                     FTGRM"
BASE COUNT          621 a         1071 c          961 g          542 t
ORIGIN      
        1 tacggcagcc gcaaatttgc tcgtgacgtt gtgggtgctg gtgcggcggt aggtttagcc
       61 ccgctccagc ttctcccggg cctgcgtcgc cagcacatca gcgcgctcat tcatcacatc
      121 gcccgaatgg ccgcgcaccc acacccactc aatctcatgc ggcttggcgg cgtccaatat
      181 gcgccgccac aaatccatgt tcttcaccgg gtcgcccgcc gcgttgcgcc agttcttgcg
      241 cacccagccc gtatgccagc gcgtgatgcc gtttttcagg tattcgctat ccgtatgcag
      301 ccgcaccttg caggggcgcg taagggccgt aagcgcctcg gccgccgccg tcagctccat
      361 gcggttattc gtggtgtcag cctcggcccc ggacagctcc cgctccgtgc ccttatacct
      421 caaaatcgcc ccccagccgc ccggacccgg attgggcttg cagccgccat cggtccagat
      481 ttcgacgagc gtctcggcaa catcagacgc cataggcgga cgcatccctg gcagcgcggt
      541 ggaagcgcag ccggcggtaa taatcgagcg ggtctttcgg cgtgacgagc gcgccggacg
      601 gggtgttcag ccagtcataa agccgggtca gcaggaagcg catcgccgcc ccctgcgcca
      661 gcaccggcag ggcatcggtc tcggccgggt tcagcttgcg gtgcgccgca tagccgcgca
      721 gcagagcgcg ggacttggtc tggttgaagg agaaatcgcg ctcgaagcac caggcattga
      781 ggcagaccgc gacatcatag gcatagatgt cggtgcaggc gaaatagaaa tcgatcagcc
      841 cggaaatctt gccgtcgaga aaaaacacat tgtcgggaaa caggtcggca tggatgtgcc
      901 ccaccggcag gccctggggc caagcggcga tgatctgctc cagccaatcg gtcagctcct
      961 cccccagccc agccataacc tggtccgcct gcggcaagca tttctgcaga agcggccccc
     1021 agccctccgg gccaagtgcg ttcttgcgcg tgggtgcaaa cccctgccca gcgagatgca
     1081 acttggccag ggcggcgccc agcggctcgc aatggtctat aagcacccta cgcggccaga
     1141 tgccgggcaa aaaagtggtg atggcggcaa tcttgccggc cagcgggttg agattatggc
     1201 catcgcgcgc gcgcaccggc aacgggcagg acagcccctg cgccgccaga tgctccatga
     1261 ggccaagaaa ccagggcaga tcctcggggt taacgcgctt ctcgtacaag gtgaggatga
     1321 agtccccgcc gctggtcgtc agtgtgtaat tgctgttctc caccccctcg gcgatgccgc
     1381 gaaaggcgcg cagggtcccg atatcgtaca gggtcagaaa ctcggtcagc gcctcgtctg
     1441 taacttccgt ataaactgcc atgcccgtag atgaccggcc gcgaaaattc tggcaaggga
     1501 ggcgccatga agaattttcg cctcctgatt ctggccgccc tgctccccct gattggctgc
     1561 tccggcggcc ccaatccgcc gcccgccggc caggcccaag ctcaagttca tgccaagagg
     1621 ggccccgccg tcttctactg cccgaacccg gccgtgttgc agcaggcgca gaccgcgacc
     1681 tatttccagc ctggccggct ggacgtgggg ggccgggtga gcacggcaca ggtgagcatc
     1741 gtgtccggca cctgccagtt tgaaaagtcg aaaaatgccg tgctgatgac catcaatgcc
     1801 tccttcctgg cggataacgg cccggccaat aatttcgcgc cgctggccct gccctggttc
     1861 gtcgccatca cggccgagga caacagtatc atccagaaga tcaactatac ccaaatactg
     1921 aaattcgacg gcaacagctc caccacgacc gccacggcca agccggtgaa ggtggaactg
     1981 cccaacaccc ccgacacgca gaacctgcag attctggtcg gtttccagga aagcccggac
     2041 cagctcgcct acgcggcggc gcacccggaa gcggcgccct gaaagggggc gaattgaccc
     2101 ccccgccccc cgcgcctatg tgaaacggcg cccacatgtc tcgttaacgt ccctaatttc
     2161 tgcggaatcc gctcaaaaat gctctccagc ctcacccgcg ccatcttcgg caccagcaat
     2221 gaccgcgccc tgaaggggtt caagcgccgg gtcgccgcca tcaacgcgct ggaaccgcaa
     2281 ttccaggccc tggacgatgc cgccctggcc gccaagaccg ccgagttcaa ggaccggctg
     2341 gaaaagggcg agacgctgga cgacctgctg gtggaggcct tcgccgtggt gcgcgaggcc
     2401 tcgacgcgcg ttctaggcat gcggcatttt gacgtgcagc tgatcggcgg catggtgctg
     2461 caccagggcc gcatcgccga gatgaagacc ggcgaaggca agacgctggt ggcgacgctc
     2521 gccgtgtacc tcaacgccct ctcgggccag ggcgtgcatg tggtcacggt gaatgagtat
     2581 ctggccaagc gcgacgccga gcagatgggc cggctctatg gcttcctcgg cctctccacc
     2641 ggcgtcatca tccccaacaa ggaggagccg gagcgccgcg aatcttatgc cgcggacgtg
     2701 acctacggca cgaataacga attcggcttc gattatctgc gcgacaacat gaaataccgg
     2761 ctggaggaca tggtccagcg gccgttcaat ttcgccattg tggacgaggt ggattccatc
     2821 ctcatcgacg aggcgcgcac gccgctcatc atctccggcc cctcggacga gccgaccgcg
     2881 ctttatgccc aggtcgacga aatcgtcgcc gtcttcctcg cccgcgggca ggtggccgag
     2941 gacggcaaac atgaatatta cgagaaggat gaaaaagccc gcaccgtcac catgacggag
     3001 gatggcgcgg aagtggtgga aaccatgctg cagcaggccg ggctgctctc cggcgggctg
     3061 tacgacctca ccaacatctc actcgtgcac catgtgcagc agagcctgcg cgcccgcact
     3121 ctgttcgccc gcgacgtgga ttatatcgtg cgcgaggacc gcatcgtcat catcgacgaa
     3181 ttcaccggcc gcatg
//
LOCUS       DASQCV010000460         1612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_100177, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000460 DASQCV010000000
VERSION     DASQCV010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1612
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100177"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..454
                     /locus_tag="VEQ16_06965"
     CDS             <1..454
                     /locus_tag="VEQ16_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HYP63610.1"
                     /translation="IWLIPSVHFAAMLNPTLYAVMNISCLAGGLLFWLMVLDPRPKPP
                     VRHSYLVRAATGFLVMFPQIGISSYIALSGQDLYPFYSICGRLFPGISATYDQMLGGI
                     IQWIPPGMMNTAALLLSLNALRLAEEEAAKKFVPPPGAKIYEAKWTGR"
     gene            complement(457..1179)
                     /locus_tag="VEQ16_06970"
     CDS             complement(457..1179)
                     /locus_tag="VEQ16_06970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HYP63611.1"
                     /translation="MAAVTAGGLLGNRLIYKQLAEGHRSGFEPVLLAATVPARPGEMV
                     LEAGTGAGAALLCLAARVPGVRGVGVERVAELVALANENFKLNELYHLSAVQADATAL
                     PFTAQSFDHVLANPPWFGTADTASPDSARDLAHRTTPGLLEAWIAELGRVVRPKGSVS
                     LILPATSFATAAGALRAQKCGEVTLLPLWPRAGQAAKMVILTARKASRAADKLLPGLV
                     LHDEAGITPAAQAVLRDGAALI"
     gene            1246..>1612
                     /locus_tag="VEQ16_06975"
     CDS             1246..>1612
                     /locus_tag="VEQ16_06975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HYP63612.1"
                     /translation="MLIVDGSTTVTADALSRLTALLERDLLATNETIVARMDSPVALI
                     PQLAAHLVASGGKRLRPLLTLATAKLCGYPGERHIKLAACVEFIHTATLLHDDVVDES
                     QLRRGAASANAVFGNKPSVL"
BASE COUNT          268 a          569 c          491 g          284 t
ORIGIN      
        1 tatatggctc atcccgagcg tgcatttcgc cgcgatgctg aaccccacgc tctatgccgt
       61 gatgaacatc tcctgcctcg ccggcgggct gcttttctgg ctgatggtgc tggacccgcg
      121 cccgaaaccg ccggtgcgcc attcctatct ggtgcgggcg gcgacagggt tcctggtgat
      181 gttcccgcag attggcatca gctcctatat cgccctgagc gggcaggacc tgtacccgtt
      241 ctattccatc tgcgggcggc tgttccctgg tatttccgcg acttatgacc agatgctggg
      301 cgggatcatt caatggattc cgcccgggat gatgaacacc gcggccctgc tgctctcgct
      361 gaatgcgctg cgcctcgccg aggaagaggc cgcgaaaaaa ttcgtgccgc cgccgggcgc
      421 aaaaatctac gaggcgaaat ggacggggcg gtagccttat attagcgccg cgccgtcgcg
      481 cagcaccgcc tgcgccgccg gcgtgatgcc cgcttcatca tgcagcacca gccccggcag
      541 caatttgtcc gccgcgcggc tggccttgcg cgcggtgaga atcaccattt ttgcggcctg
      601 accggcgcgc ggccacagcg gcaggagcgt cacctcgcca catttctgcg cgcgcaaggc
      661 acctgccgcc gtggcgaaac tggttgcggg caggatcagg ctgacactcc ccttcggccg
      721 caccacccgc cccagctcgg caatccacgc ctccagcagg cccggcgtgg tgcgatgcgc
      781 gagatcacgc gccgagtcag gcgaagccgt gtccgccgtg ccaaaccagg gcgggttggc
      841 caggacatgg tcgaaggatt gcgcggtgaa gggcagggcg gtggcatcag cctgcaccgc
      901 agagagatga tacaactcat tgagtttgaa attttcattg gccagcgcca ccagttcggc
      961 cacgcgctcc acgccgacgc cccgcacgcc cggcacccgc gccgccaggc acagcaatgc
     1021 ggcacccgcg cccgtgccgg cctccagcac catctcgccc ggccgcgccg gcaccgtcgc
     1081 cgccagcagg acgggttcga atccgctgcg atgcccttcg gccaattgct tgtagatcaa
     1141 gcggtttccg agcaaccctc ctgccgtcac cgccgccatg tgctgttgac cctttcccaa
     1201 acccgctgga tatggtggta acgcaattgg gtcaaacagg ttagggtgct tatcgtggat
     1261 ggttcgacga cagtcacggc cgatgcgctg agcaggctta ccgcgctgct tgagcgcgac
     1321 ctgctggcca ccaacgaaac catcgtcgcc cggatggaca gccccgtcgc gctcatcccg
     1381 cagctggcgg cgcatctcgt cgcctccggc ggcaagcgcc tgcgcccgct gctcaccctc
     1441 gccacggcca agctctgcgg ctatccgggc gagcggcata ttaagctcgc cgcctgcgtc
     1501 gaattcatcc ataccgccac gctgctgcat gacgacgtgg tcgacgaatc gcaactgcgc
     1561 cgcggggcgg cctcggccaa tgccgtgttc ggcaacaaac cctccgtgct cg
//
LOCUS       DASQCV010000461         2452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_431697, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000461 DASQCV010000000
VERSION     DASQCV010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431697"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..661
                     /locus_tag="VEQ16_06980"
     CDS             <1..661
                     /locus_tag="VEQ16_06980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007282857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HYP63613.1"
                     /translation="MAGLVYAGTARVAKPGDMLPEDAQLSVKGQDHPWVSRGGVKLAH
                     GLAHFGLNPEGRICLDVGASTGGFTDVLLSNGAVKVYAVDVGHGQLAWKLRSDPRVVV
                     LEKTNARHLIPEIIPEPIGALVCDASFIGLQTVLPAGLALCAPGAFAIALIKPQFEAG
                     PGQVGKGGVVRDPAIHEEVCARIESWFTSLPGWTVLGITPSPIKGPEGNVEFLIAARH
                     T"
     gene            complement(780..1697)
                     /locus_tag="VEQ16_06985"
     CDS             complement(780..1697)
                     /locus_tag="VEQ16_06985"
                     /inference="COORDINATES: protein motif:HMM:NF040434.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6473 family protein"
                     /protein_id="HYP63614.1"
                     /translation="MQLWCPDYQTPDIEIADYQEFTVHRCDIKFRGPGFDPFAGAQGS
                     YFTCVGAAQTYGRFCETPFPALLADRIGLKALNLAVGGAGPGFYLQYPSLIDAANCGK
                     FVILQAMAARHDTNSRFEANGHVEFLKDRIKGDIVDSGTAWRRIVDEDFENAPGYIAE
                     TRRSWLEETRRLIDALRVPAIFFWYSSREPDYEIDWDAMRELRARGEYVDLLNGLWGD
                     VPQLVDGPTAQEAAALCQSQARCLSRRGMGAVLINRQTGKPIDPAHYKDRGLEYQPLA
                     MGRNHYYPSAEMHEDAADALEPVVRRVIG"
     gene            complement(1868..>2452)
                     /locus_tag="VEQ16_06990"
     CDS             complement(1868..>2452)
                     /locus_tag="VEQ16_06990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012978248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HYP63615.1"
                     /translation="AARCILYIGLLPLSTALFAILRGGERPHPCFWLFSLAGSALIAG
                     YALTHGAGVASSGDVMMVAAIGICGLGYAEGARLTRRLGGWQVISWALVLSLPLMAGV
                     MLAVWPEGLRAVTPGAWAGLAYVSVFSMLIGFLFWYRGLAQGGIAAVGQLQLLQPGFG
                     LLLAAVLLHETIGWALIAVMGAVALCVAVARRYG"
BASE COUNT          497 a          834 c          705 g          416 t
ORIGIN      
        1 catggccggc ctcgtctatg ccggcaccgc gcgcgtggcc aaaccgggcg atatgctgcc
       61 cgaggacgcg cagctttccg taaaaggcca ggaccatccc tgggtctcgc gcggcggtgt
      121 aaaactcgcg cacgggcttg cccatttcgg cctcaatccc gaaggccgca tctgcctcga
      181 tgtcggcgcc tccaccggcg gctttacgga tgtcttgctc agcaacggtg ctgtaaaagt
      241 ctacgcggtt gatgtcggcc acggccagct cgcctggaag ctccgttctg acccgcgcgt
      301 ggtggtgctg gaaaaaacca atgcccgtca tctcataccc gaaataatcc ccgagcccat
      361 cggcgccctg gtctgcgacg ccagcttcat cggcctgcaa accgtgctcc ccgccggcct
      421 cgcgctctgc gcccccggcg ccttcgccat cgcgctgatc aaaccgcaat tcgaagccgg
      481 cccagggcag gtcggcaaag gtggcgtggt gcgcgacccg gcgatccatg aggaggtttg
      541 tgcaaggatc gaaagctggt tcacgtccct gcccggctgg acggttctcg gcatcacccc
      601 cagcccgatt aaaggaccgg aaggcaatgt cgagtttctg atcgccgccc ggcatacata
      661 aaatcccacc acggcccggc cgtgcctgcc gccaatggtg ctggggatat tttgccggga
      721 ggggataggg tgaaatttct gctttgggtg gttctaggac acttacagcg tgatcgcgtt
      781 cagccgatta cacggcgcac gacaggttcg agcgcgtcgg ctgcatcctc gtgcatctcg
      841 gccgagggat aataatggtt cctgcccatg gcgagcggct ggtattcgag gccacgatct
      901 ttgtagtggg ctgggtcgat cggtttgcca gtttggcggt tgatcagaac ggcacccata
      961 ccgcgacggc tgaggcagcg tgcttgactc tggcacaagg ccgccgcctc ctgcgccgtc
     1021 ggaccgtcga cgagttgcgg gacgtcgccc caaagtccgt tgaggaggtc aacatattcg
     1081 ccgcgcgccc ttagttcgcg catcgcgtcc caatcgattt cgtaatccgg ctcgcgagaa
     1141 gagtaccaga agaagatggc gggtacacga agtgcgtcga tgagtcttcg tgtttcttca
     1201 agccaactcc ggcgcgtctc ggcgatatac cccggcgcat tctcaaaatc ctcgtccacg
     1261 atgcggcgcc aagcggtgcc ggaatcgacg atgtcgccct tgatccgatc cttcaggaac
     1321 tcgacatgtc cattcgcctc gaagcggctg ttcgtatcat gccgcgcggc catcgcttgg
     1381 agaatgacga actttccgca attggccgcg tcgatcagcg aaggatattg aaggtaaaac
     1441 cccggtccag cgccgccgac ggccaggttg agcgccttga gtccgatccg gtcggcgagc
     1501 aatgcgggga agggtgtttc gcagaaacgg ccgtaggtct gcgctgcgcc aacacaggta
     1561 aagtaagagc cttgcgctcc cgcgaaagga tcgaagcccg ggccgcggaa cttgatgtcg
     1621 cacctgtgta cggtgaactc ctgatagtcg gcgatctcga tgtcgggagt ctgatagtca
     1681 ggacaccaga gctgcatgca acctacgtcc ttttcgagca ttgggcggaa acgtccgatg
     1741 ttatctccaa gctgtgatac tgccgttata ccctgcaagg gaaggtccga gatgggtcga
     1801 aaccagacaa cgcctccccc agccgacgcg atataatcca agcgcctttc cgccagttct
     1861 cccggcctca gccataacgc cgcgccaccg ccacacaaag cgccaccgcc cccatcaccg
     1921 caatcagcgc ccagccaatg gtctcgtgca gcaaaaccgc cgccagcagc agcccgaagc
     1981 ccggttgcag caattgcaac tgccccaccg ccgcaatgcc cccctgcgcc agcccgcgat
     2041 accagaacaa aaacccgatc agcatggaaa acaccgacac ataagccagc cccgcccagg
     2101 cccccggcgt caccgcccgc aacccttctg gccataccgc cagcatcacc cccgccatca
     2161 aaggcagcga taacaccagc gcccaggaaa tcacctgcca gccgcccaag cggcgcgtaa
     2221 gccgcgcccc ctcggcatag cccagcccgc aaatgccaat cgccgccacc atcatcacat
     2281 cgcccgacga cgccacgccc gccccatgcg tcagcgcgta cccggcaatc agcgcgctgc
     2341 ccgccagcga gaacagccag aagcagggat gcggccgctc gcccccgcgc agaatggcga
     2401 acagggccgt ggagagcggc agcagcccga tataaagaat gcagcgcgcg gc
//
LOCUS       DASQCV010000462         5456 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3250099, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000462 DASQCV010000000
VERSION     DASQCV010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5456
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3250099"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1065
                     /gene="cysC"
                     /locus_tag="VEQ16_06995"
     CDS             <1..1065
                     /gene="cysC"
                     /locus_tag="VEQ16_06995"
                     /EC_number="2.7.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008491970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004020 - adenylylsulfate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HYP63616.1"
                     /translation="RVLPSGKTSTVTRVVTFDGDLPLAVAGQSITLCFADEIDCSRGD
                     VITKAEEPVQVADQFEANLVWMSDEPLTPGRSYWLKIGTQTVSAAIHAPKYLVNVNTL
                     EHVAAKTLELNSIGVTNIITDRAIPFEAYTENRTLGGFIVIDKMTNATVAAGMINFAL
                     RRSQNVHWQALDVSREVHAKLKNQQPSVLWFTGLSGAGKSTIANLVEKKLVRMNRHTF
                     LLDGDNVRHGLNKDLGFTEADRIENIRRVGEVAKLMTDAGLIVVTAFISPFKSERAMV
                     RQMMKPGEFIEIFIDTKLEEAEKRDVKGLYKKARSGELKNFTGIDSPYEPPEDPEIHI
                     DTSKITAEEAADMIIARLIP"
     gene            1086..1817
                     /locus_tag="VEQ16_07000"
     CDS             1086..1817
                     /locus_tag="VEQ16_07000"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008491972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HYP63617.1"
                     /translation="MTDLELASHVATVAGKLLLELQQSGLFSEKALGKAGDRVANAFI
                     IEALRQQRPEDGILSEEEKDNEARLSAGRVWIVDPLDGTREYGEKRTDWAVHIALSIN
                     GKPEVGAVALPGLGVTLTSVPQPLPTVAHRLRVLVSRTRPAKEAVAVAEALNAELVPM
                     GSAGAKAMAVLRGEADIYLHTGGQYEWDNCAPAAVALAAGLHASRADGSPLVYNNADP
                     YLPDLLICQKHLAPQVMDALAKAAV"
     gene            1937..3214
                     /gene="eno"
                     /locus_tag="VEQ16_07005"
     CDS             1937..3214
                     /gene="eno"
                     /locus_tag="VEQ16_07005"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HYP63618.1"
                     /translation="MTAIADIIAREILDSRGNPTVEVDVLLESGAFGRAAVPSGASTG
                     AHEAVELRDGDKERYGGKGVLKAVEAVEGEILDTLAGLDAEDQIGIDNILIDLDGTPN
                     KARLGANAILGVSLALAKAAAADNGMPLYRYIGGVSARTLPVPMMNIVNGGKHADNPI
                     DIQEFMIQPVGASSIAEAVRIGAEIFATLKKQLHDAGHNTNVGDEGGFAPNLRSADEA
                     LGFISKACEKAGYLPGQDITFALDCASTEFFKDGIYDLEGEGKKFDASQMVDYLADLC
                     TRYPIASIEDGCAEDDWSGWKLLTERLGAKVQLVGDDLFVTNPVRLRRGIEAGTANSI
                     LVKVNQIGTLTETLEAVDIAHRAGYTAVMSHRSGETEDATIADLAVATNCGQIKTGSL
                     ARSDRTAKYNQLIRIEAELGGTARYYGPAMRKV"
     gene            complement(3287..4036)
                     /locus_tag="VEQ16_07010"
     CDS             complement(3287..4036)
                     /locus_tag="VEQ16_07010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013641012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP63619.1"
                     /translation="MNRLWFALPFVAALGLSPIARAQDATPSPQQIQTMIAAGQETQA
                     IQALENVLESHPKSAVAWYLLAEAYDAQGNEDGASSALNMAVRSAPGLPFANPQEVAA
                     LRAHINASQPQHVGRGGASTVMLVIGGLVVLFLLLRLFSGRNQAMRQYGYPPPPPAGA
                     PPYGFGYGPPGGGGGLGSALMGGLAAGAGFAAGERIIDGLTGQHGGGPVIDQGSFPQG
                     PDLSRDDGLMGNPGWDNSSNPSDDDLNNTGW"
     gene            4473..4982
                     /locus_tag="VEQ16_07015"
     CDS             4473..4982
                     /locus_tag="VEQ16_07015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HYP63620.1"
                     /translation="MTSLALHEEDVTSVSNPLDLVEQVISANEWLYDRRSDSELAAEG
                     QGKWCDYGLFFCWSDEISVMHFSAAFDMKAPPKTRGALYELLAKANERLWIGHFGMDE
                     ETGMPIYRHSMLLRGTPSAAAESIEDLIDIAMTECERFFPAFQFVLWGGKSADEALDA
                     AMLECAGEA"
     gene            4988..5317
                     /locus_tag="VEQ16_07020"
     CDS             4988..5317
                     /locus_tag="VEQ16_07020"
                     /inference="COORDINATES: protein motif:HMM:NF016854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HYP63621.1"
                     /translation="MVRDRGLEELLRADLQAIPGVEEKAMFGGRAWLLDGKLFCGARD
                     DGMLVRLGAGQDGWALRQPEISRMISRGREMRGWVWAGAAAFGDDALRRRLLDAALAF
                     VRSLPPK"
BASE COUNT          986 a         1699 c         1784 g          987 t
ORIGIN      
        1 cgcgtgctgc cctccggcaa gacctcgacg gtgacgcgcg tcgttacctt cgatggcgat
       61 ctcccgctcg ccgtcgccgg ccagtccatc acgctctgct tcgccgatga gatcgactgc
      121 tcgcgtggtg acgtcatcac caaggcggaa gagccggtgc aggtggccga ccagttcgag
      181 gcgaatctgg tgtggatgtc cgacgagccg ctcacgccgg gccgctccta ctggctcaag
      241 atcggcacgc agacggtttc ggcagccatt catgcaccca agtacctcgt gaacgtgaac
      301 acgctggagc atgtggcggc gaagacgctg gagctgaact ccatcggtgt gaccaacatc
      361 atcaccgacc gcgccattcc gtttgaggcc tacaccgaga accgcacgct tggcggcttc
      421 atcgtcatcg acaagatgac gaacgccacc gtcgccgccg gcatgatcaa ttttgcgctg
      481 cgccggtcgc agaatgtgca ttggcaggcg ctggatgtgt cgcgcgaggt tcatgcgaag
      541 ctgaagaacc agcagccttc cgtgctgtgg ttcaccggcc tctccggtgc gggcaagtcg
      601 accatcgcca atctggtcga gaagaagctg gtgcggatga accgccacac cttcctgctc
      661 gatggtgata atgtccgcca cggcctgaac aaggaccttg gcttcaccga ggctgaccgg
      721 atcgagaata tccgccgcgt cggtgaggtg gcgaagctga tgaccgatgc cggcctgatc
      781 gtcgtcaccg ccttcatctc gcccttcaag tcggagcgcg cgatggtgcg gcagatgatg
      841 aagccaggtg agttcatcga aatcttcatc gacaccaagc tggaagaggc cgagaagcgc
      901 gacgtgaagg gcctgtacaa gaaggcccgg tccggcgagc tgaagaactt tacggggatc
      961 gacagcccgt atgagccgcc tgaagatccg gagatccata ttgacacctc gaagatcaca
     1021 gcggaggagg cggcggatat gatcatcgcg cggctgatcc cgtgagcgaa gcgagcaaag
     1081 cgaggatgac ggatctggag ctggcctcgc atgtcgcgac ggtcgcgggc aagctgctgc
     1141 tggaattgca gcagtccggc ctgttctccg aaaaggcgct tggcaaggcg ggcgaccgcg
     1201 tggccaatgc ctttatcatc gaagcgctgc gtcagcagcg tcccgaggat ggcatcctct
     1261 ccgaagagga gaaggataac gaggcgcgtc tgtccgcggg ccgcgtgtgg atcgtcgatc
     1321 cgctcgatgg cacgcgcgaa tatggtgaga aacgcacgga ttgggcggta catatcgccc
     1381 tctccatcaa tggcaagccg gaggtgggcg ccgtggcgct ccccggtctg ggcgtgaccc
     1441 tgacctccgt accgcagcct ttgccgaccg tggcacaccg gctgcgcgtg ctggtgagcc
     1501 gcacccgccc ggcgaaagag gccgtggcgg tggcggaggc gctgaatgct gagctggtgc
     1561 ccatgggctc ggccggtgcc aaggctatgg cggtgctgcg cggtgaggcg gatatctatc
     1621 tgcacactgg cgggcagtat gagtgggata attgcgcccc ggccgccgtg gcgctcgccg
     1681 ctggcctgca tgcctcgcgc gccgatggca gcccgctcgt ctataataat gccgatccgt
     1741 atctgccgga tctgctgatc tgccagaagc acctggcccc gcaagtgatg gatgcgctgg
     1801 ccaaggccgc cgtctaaggc tgttctccat taccatcacg taagtcagag cgttcatccc
     1861 ccgggatggg cgctctggcg cttgcttgcg gccagcccct gggctacccc gccgcagagc
     1921 agataaggag ccataaatga ccgccatcgc cgatatcatt gcccgtgaaa tcctggacag
     1981 ccgcggcaat cccaccgttg aggttgatgt tctgctggaa tccggcgctt tcggccgggc
     2041 cgccgtgccc tccggcgctt ccaccggcgc gcatgaggcc gtggagctgc gcgatggtga
     2101 caaggagcgc tatggcggca agggtgtgct gaaggcggtt gaggcggttg agggcgagat
     2161 cctcgacacg ctggccgggc tcgatgcgga agaccagatc ggcatcgaca atatcctcat
     2221 cgacctggac ggcaccccga ataaggcccg cctcggcgcc aacgccatcc tcggcgtgtc
     2281 cctggccctg gccaaggcgg cggcggccga caatggcatg ccgctctacc gctatattgg
     2341 cggcgtctcc gcgcgcaccc tgccggtgcc gatgatgaat atcgtcaatg gcggcaagca
     2401 tgcggacaac cccatcgaca tccaggaatt catgatccag cccgtgggcg cgtcctccat
     2461 cgccgaggcc gtgcgcatcg gcgccgagat ttttgccacg ctgaagaagc aactgcacga
     2521 tgccggccac aacaccaatg tgggcgatga gggtgggttt gcccccaact tgcgctcggc
     2581 cgacgaggcg cttggcttca tctccaaggc ctgcgagaag gcgggctatc tgcccggcca
     2641 ggacatcacc ttcgccctgg actgcgcctc caccgaattc ttcaaggacg gcatctacga
     2701 cctcgaaggc gagggcaaga aattcgacgc cagccaaatg gtcgactact tggccgatct
     2761 ctgcacccgt tatcccatcg cctccatcga agatggctgc gccgaggatg actggtctgg
     2821 ctggaagctg ctcaccgagc gcttaggcgc caaggtgcag ctcgtcggcg acgatctctt
     2881 cgtgaccaac ccggtgcgct tgcgccgcgg catcgaggcc ggcaccgcca actccattct
     2941 cgtcaaggtc aaccagatcg gcaccctcac cgagaccctg gaagccgtcg atatcgccca
     3001 ccgcgccggc tacaccgccg tgatgtcgca ccgctccggc gagaccgagg acgccaccat
     3061 cgccgacctc gccgtcgcca ccaattgcgg ccagatcaag accggctcgc tcgcccgctc
     3121 cgaccgcacc gccaaataca accagctcat ccgcatagaa gccgaactcg gcggcaccgc
     3181 ccgctactac ggccccgcaa tgcggaaggt ctgaccaggg ggctttgccc cctggtcccc
     3241 cagcagggct ccgcccctgg tggggttcaa ggggcgaagc cccttgtcac catcccgtat
     3301 tgttgaggtc gtcgtcgctc gggttgctgg agttgtccca gccagggttg cccatgaggc
     3361 cgtcgtcgcg ggagaggtcg gggccctgtg ggaagctgcc ttggtctatg acggggccgc
     3421 cgccatgctg gccggtcagg ccgtcgatga tgcgttcacc cgcggcaaag ccggcgccgg
     3481 cggcgaggcc gcccatgagg gcgctgccca gcccgccacc accgccgggc gggccatagc
     3541 caaagccata gggcggcgcg ccggcgggcg gcgggggcgg atagccgtac tggcgcatgg
     3601 cctggttgcg cccggagaag aggcgcagca gcaggaacag caccacgagc ccgccaatga
     3661 ccagcatgac ggtgctggcg ccgccgcggc ccacatgctg cggctggctg gcattgatat
     3721 gcgccctcag cgcggccact tcctgcgggt tggcgaaggg caggcccggc gcggagcgca
     3781 cggccatgtt cagcgcgctg gaggcgccgt cctcgttgcc ctgtgcgtca taggcctcgg
     3841 ccagcaggta ccaggcgaca gcgcttttcg ggtgggattc cagcacgttc tcgagcgcct
     3901 ggatggcctg cgtttcctgt ccggcggcga tcatggtctg gatctgctgc gggcttggcg
     3961 tggcgtcctg cgcacgcgcg atggggctca gccccagcgc ggcgacgaag ggaagagcga
     4021 accatagacg gttcatgggt tgggctcctg aaaatagtcc aagggtaata tgggacttcc
     4081 acgcgcaaaa atccattgcc ggatgctgcg gccggcaggc gggtgtagcg gctgcatatg
     4141 aaagggaagg ctgggagccg gttggcgcat tggccggcgt gggcagggcg gaaggtttgg
     4201 agacacattg attccatact gttacatatc acgtgttgcc cgataatgat gccaattcga
     4261 atcattttcg ccgctttgtt ttgttcttgt gtagaaatat aatgccgcgt cgtaacggtt
     4321 cgtaacagca ccggcagcgc gcacgcttaa ttaattgccc agcccccatg attcccggta
     4381 aaatccgagt cgcggggaga aacactggag acagcgcata cgtcccagca ttgtctcacc
     4441 cggcacctta tggcgcctaa ggagacttgt gcatgacgag cctcgcctta cacgaagaag
     4501 atgtaacctc cgtctccaat ccgctcgacc tggttgaaca ggttatttcc gctaacgagt
     4561 ggttgtatga tcgccgctcc gactcggagc tggccgccga gggccagggc aaatggtgcg
     4621 attacggcct gtttttctgc tggtccgacg aaatttcagt catgcatttt tccgccgcct
     4681 tcgatatgaa agccccgccg aaaacgcgcg gcgcgttgta tgagctgctg gcgaaagcca
     4741 atgagcggct ctggatcggg catttcggca tggatgagga gaccggcatg ccgatctacc
     4801 gccactccat gctgctgcgt ggcacgccct cggccgccgc ggaatccatc gaggacctca
     4861 tcgacatcgc catgaccgag tgcgagcgtt tcttccctgc cttccagttt gtactgtggg
     4921 gcggcaagag cgcggatgag gcgctggacg ccgccatgct ggagtgtgcc ggcgaagcgt
     4981 aaccctcgtg gtgcgcgaca gagggctgga ggaattgctg cgggccgatc tgcaggccat
     5041 tcctggcgtt gaggaaaaag cgatgtttgg cggccgtgcg tggctgctgg atggcaagct
     5101 tttttgcgga gcccgcgatg acggcatgct ggtcaggctt ggcgccggcc aggatggctg
     5161 ggcgctgcgg cagccggaga tcagccggat gatatcgcgt ggcagagaga tgcgcggctg
     5221 ggtatgggcg ggcgcggcgg cattcgggga tgatgccctg cgccgcaggc tgctcgacgc
     5281 cgctctggcg ttcgtccggt ctctgccgcc gaaatagtct ggggaaatag tctgggatcg
     5341 tagtgtggac ttgggaaaca gcctcgtgac ataggggggg tatgaacatg ccctccaagc
     5401 ttccttccat cctgcttatc ggcggtggcc gcatgggcag cgccttgctc gccggc
//
LOCUS       DASQCV010000463         2542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_762737, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000463 DASQCV010000000
VERSION     DASQCV010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_762737"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..335
                     /locus_tag="VEQ16_07025"
     CDS             <1..335
                     /locus_tag="VEQ16_07025"
                     /inference="COORDINATES: protein motif:HMM:NF024675.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HYP63622.1"
                     /translation="TTVLETGRAALLSHPEINAWENEQFTFVIARLEVDYRSEVRWPG
                     LVHVGTAVKSIGNSSMVLQQALFFEDVCVVTAQSVMVQVDRHAHRPAAIGVATRAVLQ
                     SFMLKVRA"
     gene            complement(319..744)
                     /locus_tag="VEQ16_07030"
     CDS             complement(319..744)
                     /locus_tag="VEQ16_07030"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007004767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP63623.1"
                     /translation="MIQIIACDFGGAGFETCLDIRLRVFVTEQNVPVEEERDSFEESA
                     RHFLALWQCDAAGTARALVKEQGLVKIGRVAVLPPYRKFGLGAALMRAIETEFAGASF
                     QLDSQLQAIKFYEKLGYVAEGPVFDDAGIPHRTMFKRAP"
     gene            complement(741..2360)
                     /locus_tag="VEQ16_07035"
     CDS             complement(741..2360)
                     /locus_tag="VEQ16_07035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase PhoX"
                     /protein_id="HYP63624.1"
                     /translation="MRRRELVLGGALALGGVSAQAQSMLGSPAVFAPAAAPASPPAPV
                     TPLPPNKQAAMSDDKTGQGLNRIVIARWGDAVLPNAPPFNPAALSADQADGQFPYDGV
                     IAGILPPAAAQDGIPRLVMVVATPDIPARMVFRPGQDQPAIAGRMQGVTVMNLQFMGG
                     RWVTVDGGYQSRRISDSTLCSITGPAAAQVGDSVQGVLGPQTGGATPWGSVLLAEGDA
                     AAWLTRLANIGYGYADPAQAVRFGWLVELNPLDPNSIPVKRTALGRVPRAGVAATQTK
                     DGRPVVFFTEDSPTGALYRFVAATNATDGTALDSGTLSVAKLSDSGITWVDLGNDVPS
                     LVGLSGAARNAGAEQFDAPGGLALSADGGTLYMACGGNQGRSSGDALNPRAGDDNGHI
                     IAFSLPGSDATAKNFAAALTLMAGNPAVAQGASYPPGSAFWLRKPRTLSLDGSGKLWI
                     GTDQRGDSSLTADGLFILPPSGPLQMAYLAPKGAAIGGVVFDAGTHTAFGMVRHPGAT
                     PEASYNYPATRWPTLRPDMPPQSTIVGLVSA"
     gene            complement(2362..>2542)
                     /locus_tag="VEQ16_07040"
     CDS             complement(2362..>2542)
                     /locus_tag="VEQ16_07040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HYP63625.1"
                     /translation="VLVAMEPHQTPVPGGTASFFQQLIGGVGSYNPLGSAQDTSGGVG
                     GPSSNIGNSGSGSGF"
BASE COUNT          421 a          870 c          831 g          420 t
ORIGIN      
        1 acaccaccgt gctggaaacc ggtcgcgccg ccttgctcag ccacccggag atcaatgcct
       61 gggagaatga gcaattcacc tttgtcatcg cgcggctgga ggtggattac cgcagcgagg
      121 tgcgctggcc tggcctcgtc catgttggca cggcggtgaa atccatcggc aacagctcga
      181 tggttctgca gcaggcgctg tttttcgagg atgtctgcgt ggtcacggcg cagagcgtga
      241 tggtacaggt ggataggcac gcgcatcgcc ccgcggccat cggcgtggcc acgcgcgcgg
      301 tgcttcagag cttcatgctc aaggtgcgcg cttgaacatc gtccggtggg ggatgccggc
      361 atcgtcgaat accggcccct ccgccacata gcctagcttt tcgtagaact ttatggcctg
      421 cagctgcgag tcgagctgga agctggcacc agcgaactct gtctctatgg cgcgcatcaa
      481 cgccgcgccc agcccgaatt tgcggtaggg cggcagcacc gccacgcggc cgattttcac
      541 cagcccttgt tccttcacca gcgcgcgcgc ggtgcctgcc gcatcgcact gccatagcgc
      601 caggaaatgc cgggccgatt cctcgaagga atcgcgctcc tcctcgaccg gcacattctg
      661 ctccgtgacg aacacgcgca gacgaatatc caaacaggtc tcaaacccgg caccgccaaa
      721 atcgcaggcg atgatctgga tcatgccgaa acgagcccca cgattgtgct ttgcggcggc
      781 atgtccggcc gcagggtcgg ccagcgcgtc gccgggtaat tatagctcgc ctcaggtgtc
      841 gcgccaggat gacggaccat gccgaaggcg gtgtgcgtgc ccgcatcgaa cacgaccccg
      901 ccgatggccg cccctttcgg cgccagatag gccatttgca gcggcccgct gggcggcagg
      961 atgaacagcc cgtccgcggt cagcgaacta tcgcccctct ggtccgtgcc gatccagagc
     1021 ttcccgcttc catccagcga tagagtgcgc ggcttgcgca gccagaatgc gctgcccggc
     1081 gggtaggagg cgccctgcgc gacggccggg ttgcccgcca tcagcgtcag cgcggcggcg
     1141 aaattcttcg ccgtggcatc gctgcccggg agggagaagg cgatgatatg cccgttatca
     1201 tcgcccgcgc gcggattcag cgcatcaccg ctgctgcggc cctggttgcc gccgcaggcc
     1261 atatataagg tgcctccatc cgcgctcagc gccagcccgc ccggcgcgtc gaattgttcc
     1321 gcccctgcgt tccgcgccgc tccggacagt ccgacgaggc tgggcacgtc attgccgaga
     1381 tccacccacg tgatcccgct atcagaaagc ttcgctacgg agagcgtacc ggaatccagc
     1441 gccgtgccgt ccgtcgcgtt ggtggcggcg acgaagcggt atagcgcgcc ggtgggcgag
     1501 tcttcggtga aaaacaccac cggccgccca tccttggtct gggttgcggc cacccctgcg
     1561 cgcgggacgc gccccagcgc ggtgcgtttc accgggatgc tgtttgggtc gagcggattc
     1621 agctccacca gccagccgaa gcgtaccgcc tgggccgggt cggcatagcc gtatccaata
     1681 ttggccaagc gcgtgagcca ggcagcggca tcaccctcgg ccagcagcac gctgccccac
     1741 ggggtggcgc cgccggtttg cggccctagc acgccctgca cgctgtcgcc cacctgggca
     1801 gcggcggggc cggtgatgga acagagtgta gagtcggaaa tgcggcgcga ctgatagccg
     1861 ccatccaccg tgacccaccg cccgcccatg aattgcagat tcatcactgt tacgccctgc
     1921 atgcgtccgg cgatggcggg ctgatcctgg ccaggccgaa acaccatacg cgcaggaata
     1981 tccggcgtcg ccaccaccat caccaggcgc ggaattccgt cctgcgcggc ggccggcggc
     2041 agaatcccgg caatcacccc gtcataggga aattgcccgt ccgcctgatc ggcgctcaac
     2101 gcggccgggt tgaagggtgg ggcgtttggt aaaacggcgt cgccccagcg ggcaatgacg
     2161 atgcggttga ggccctggcc ggtcttgtcg tccgacatgg ccgcctgctt gttgggcggg
     2221 agaggggtta ccggggcagg ggggctggct ggcgccgcgg cgggtgcgaa tacggccggc
     2281 gagcccagca tgctttgcgc ctgtgccgac acgccgccaa gcgccagcgc gccgcccaga
     2341 accagctcgc ggcgccgcac gttagaagcc cgagccgctg ccggaattgc cgatattgga
     2401 cgaggggccg cccacgccgc cgctcgtatc ctgtgccgag cccagcgggt tgtagctgcc
     2461 cacgccgccg atcagctgtt ggaagaagct cgccgtgccg cccggcaccg gtgtttgatg
     2521 cggctccatc gcgaccagca cc
//
LOCUS       DASQCV010000464         2970 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1096691, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000464 DASQCV010000000
VERSION     DASQCV010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2970
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1096691"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..476)
                     /locus_tag="VEQ16_07045"
     CDS             complement(<1..476)
                     /locus_tag="VEQ16_07045"
                     /inference="COORDINATES: protein motif:HMM:NF028235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator C-terminal
                     domain-containing protein"
                     /protein_id="HYP63626.1"
                     /translation="MARPSNRDKILAEGLKVVHERGFASASVREIAQAAQVPLGSFTN
                     HFASKEAFGLEILDLYYEQSHALLAVTLLNEALPPLERIELYIDRTIAKLHDKEMRGG
                     CLLGNFGAEVTDHCEAMRHRLIAIFEEIRQALIHALRAAVTAGDLPADFDCEDTAG"
     gene            673..927
                     /locus_tag="VEQ16_07050"
     CDS             673..927
                     /locus_tag="VEQ16_07050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63627.1"
                     /translation="MSYFAHLGVAALLAASLAPAAAQARSAGHYSAVPAATLVATQGA
                     QAAQAHGRASERAVSAAAFTVAPSQPQPQYAVASDDGYLG"
     gene            1042..1572
                     /locus_tag="VEQ16_07055"
     CDS             1042..1572
                     /locus_tag="VEQ16_07055"
                     /inference="COORDINATES: protein motif:HMM:NF021438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HYP63628.1"
                     /translation="MFRNTLAAGVEILSWIMVALLCIGLGTLPARAAQPGPVGAWVTA
                     GGDAVIQIYECGDSLCGAISGMVLAPADRTPVDWLGQTQCGLVIVRTVATPTQGGDPA
                     WFGSITDPRDGSVYHARLTLDGNGNLQLRGYVGLPIFGRTQTWTRYTGAPLPADCRLN
                     TISTLTASSGAGSSNG"
     gene            complement(1583..>2970)
                     /locus_tag="VEQ16_07060"
     CDS             complement(1583..>2970)
                     /locus_tag="VEQ16_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYP63629.1"
                     /translation="RIDEVEFHPAWHELYGMLRADEVHALGWTEPRPGTHVARAALSY
                     LWLQGEAGVGCPAAMSFASLAALRHAPELLQRFKGQILSPQYDPRPCAPGEKPALTVA
                     MAMTEKQGGSDLRQVQTEALPAGGGWYLLTGHKWFFSVPVADLFLTLARTEAGPTCFL
                     AQGWRDDGSRNLLRLQRLKDKCGNRSNASSEVEFCGLEARLVGKEGRGIATILEMAHL
                     TRLECALGSAGQMRQALRLALHHAGNRAAFGRPLLAQPAMANVLADLALEAEAAMWLA
                     LRAAAALDASERDEGERLLSRILAPLAKYWVCKRAPALVAEALECHGGNGFIEEHDIA
                     RLYRDAPLNGLWEGSGNVICLDVMRALARMPEGGALLRAEIARAKGAHPVLDGWLEAP
                     LPAPEEGNARLLTEQLALALAVSLLLRHAPPDLAAAYCVTRLGRSGGHVFGTLPHDVD
                     FEPILARAGAA"
BASE COUNT          527 a         1010 c          895 g          538 t
ORIGIN      
        1 aatccggccg tatcctcgca atcgaaatcc gccggaagat cgcctgccgt cacggccgcg
       61 cgcagggcat ggatcaaggc ctgccggatt tcctcgaaaa tcgcgatcag cctgtgccgc
      121 atcgcttcgc aatggtcggt cacctcggcg ccaaaattac cgagcagaca gccgccgcgc
      181 atttccttgt catgcagctt ggcgatggtg cggtcgatat aaagctcgat ccgctcgagc
      241 ggcggcagcg cttcgttcag caacgtgacg gcgagcagcg catggctctg ctcataataa
      301 agatcgagaa tttccagccc gaacgcctcc ttggaggcga aatggttggt gaaggagcca
      361 agcggcacct gcgccgcctg ggcgatttcg cgcaccgaag cgctggcgaa gccgcgctca
      421 tgcacgacct tcaggccttc ggcgagaatc ttgtcacggt tggatggtct ggccatgaaa
      481 ataaagtacg ttcgtacata ttaaaaggca agaaaaatcg gaattagccc ttaaaatgcg
      541 gtttatgcat ggcagacgca tgggtctcgc gttcacagaa taactctttt cgtttgaata
      601 agtacgtacg tacgtatata tagccctgca taccgaggtt attccgcccc ggaccatcag
      661 ggacaagttc aaatgtctta ttttgctcat ttaggtgttg ctgctctgtt ggccgccagc
      721 ctggcgccgg ccgccgccca ggcccgttcc gcgggtcact attctgccgt ccccgccgcg
      781 acgctcgtcg ccacccaggg cgcccaggcg gcgcaggccc atggccgtgc ctctgagcgt
      841 gccgtttctg ccgccgcttt caccgtcgcg ccctctcagc cccagcctca gtacgccgtc
      901 gcatccgacg atggctacct tggctaatgc gggggttaat gcgggttgac ccaggaacgg
      961 cccggaccaa ccgggccgtt ccggtcttct ctccgccacg ctgcatcttt cgcgatgcca
     1021 ggcgctttag gatgaactga catgttccgt aatactctcg ctgctggcgt ggaaattctg
     1081 tcctggatca tggttgccct cctttgcatc gggcttggca cattgcccgc gcgcgccgcg
     1141 cagcctggcc ccgtcggtgc gtgggtgacg gcgggtggtg acgcggtgat ccagatctac
     1201 gagtgcggcg actccctgtg cggcgccatc tccggcatgg tgctggcccc cgccgacagg
     1261 acgcccgttg attggctggg ccagactcaa tgcggcttgg tcatcgtccg caccgtcgcc
     1321 actcccacac aaggcggcga ccctgcttgg ttcggttcca taacagaccc gcgcgatggc
     1381 tccgtctatc acgcccgcct gaccctggac ggtaatggca atctacagct gcgcggttat
     1441 gtcgggctgc cgattttcgg ccgcacccag acctggacac gctataccgg cgcgcctcta
     1501 cctgccgatt gccgcctgaa cacgatttcc accctaaccg cctcctccgg cgccggttcg
     1561 tccaacggct agccggccgc gttcaggcgg caccggcgcg ggcgaggatt ggctcgaaat
     1621 cgacatcgtg aggcagtgtg ccgaacacat ggccgccgct gcgtcctaac cgtgtgacgc
     1681 agtaggcggc ggcgaggtct ggcggcgcat ggcgcagcag caggctgacg gcgagcgcca
     1741 gagcgagctg ctcggtaaga aggcgcgcat tgccctcctc gggtgcaggc aagggggctt
     1801 ccagccagcc atccagcaca ggatgcgcgc ctttggcgcg ggcgatttcc gcacgcagca
     1861 gcgccccgcc ctcgggcata cgcgcgagag cccgcatcac gtccaggcag atgacattgc
     1921 cagagccctc ccacaacccg ttgagcggcg catcacgata gagcctggca atgtcatgct
     1981 cctcaatgaa gccattgccg ccatggcatt ccagcgcctc cgccactaaa gcaggggcgc
     2041 gcttgcacac ccaatatttg gccagggggg cgaggatgcg gctcagcagc cgctcgccct
     2101 cgtcgcgctc gctggcgtcc aaagcggctg ccgcccgcag cgccagccac atcgcggctt
     2161 ctgcttccag cgccaggtcg gccagcacat tcgccatggc gggctgcgcc aggagcggcc
     2221 ggccgaatgc cgcgcggttg ccagcatggt gcagcgccag acgcagcgcc tggcgcatct
     2281 gcccggcact gcccagcgcg cattccagcc tggtgagatg cgccatttcc aggatggtcg
     2341 cgataccgcg cccctccttg ccgaccagcc gcgcctccag cccgcaaaac tccacttccg
     2401 acgaagcatt ggagcggttg ccgcatttat ccttcagccg ttgcaggcgc aggagattgc
     2461 ggctgccatc atcgcgccag ccctgtgcca ggaaacaggt tggccccgcc tcggtgcgtg
     2521 ccaaggtgag gaacagatcc gccaccggca cggagaaaaa ccatttatgc ccggtgagca
     2581 ggtaccagcc gccgcctgcg gggagggctt ccgtttgtac ctgccgtaaa tcggagccac
     2641 cctgcttttc cgtcatcgcc atcgccacgg tcagcgccgg tttttcccca ggcgcgcagg
     2701 ggcggggatc atattgcggc gaaaggatct gccccttgaa gcgctgcagc aattccggtg
     2761 catggcgcag cgccgccaga gaggcaaaac tcatggccgc cgggcaaccc acccccgcct
     2821 cgccctgcaa ccagagataa gacaaagcgg cgcgcgccac atgcgtaccg gggcgcggct
     2881 cggtccagcc cagcgcatgc acctcgtccg cgcgcagcat gccgtacagc tcatgccagg
     2941 cgggatgaaa ctccacctcg tcgatgcggt
//
LOCUS       DASQCV010000465         3154 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2587638, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000465 DASQCV010000000
VERSION     DASQCV010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3154)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3154)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3154
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2587638"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..786)
                     /gene="tsf"
                     /locus_tag="VEQ16_07065"
     CDS             complement(<1..786)
                     /gene="tsf"
                     /locus_tag="VEQ16_07065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HYP63630.1"
                     /translation="MAEITAALVKDLRETTGAGMMDCKKALTESNGDVQAAIDWLRKK
                     GLSAAAKKSGRVAAEGLVAVALAPGKVALVEVNAETDFLARNETFQNFVEGVAKVALT
                     VGEDVEAIKAAAYPGTGRTVAEETVHQIATIGENISLRRAAVINVPGGVAAAYVHGAV
                     RPGLGKIGVIVGLTGKADEAIEDLGKKIGMHVAATPGTTALTIAEVDPATLEREKAVL
                     TDQARASGKPENIIEKMVEGRVKKFYEDVVLLEQVWVHDGESRV"
     gene            complement(882..1655)
                     /gene="rpsB"
                     /locus_tag="VEQ16_07070"
     CDS             complement(882..1655)
                     /gene="rpsB"
                     /locus_tag="VEQ16_07070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HYP63631.1"
                     /translation="MALPDVSLRQLLEAGVHFGHNTRRWNPRMAPYLFGVRNQVHIID
                     LQQTAPLLERALKAVRDVTAAGGRVLFVGTKRAAADYVADAAQRCGQYYVNHRWLGGM
                     LTNWKTITGSIKRLRQMDELLGGETQGYSKKEVLNFTRDREKLERALGGIKDMGGLPD
                     ILFVIDTNKEKLAVEEANKLGIPVIAILDSNSDPAGVTYPVPGNDDAIRAITHYCDLI
                     AAAVLDGISAELGSSGIDLGAAAEPILDAAPEADAEAHA"
     gene            1906..2946
                     /locus_tag="VEQ16_07075"
     CDS             1906..2946
                     /locus_tag="VEQ16_07075"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase fold domain-containing
                     protein"
                     /protein_id="HYP63632.1"
                     /translation="MTETAPGGRLQTNEHGVISVQPFTLPLSAALSPMAAKRLAAALQ
                     QESRMPDFSGAQNEAQFRSLVDAFRHGLNEGFLKPMLARMAVDFPVQMQGDVLGGVNV
                     EEFTPLSGVDESCVLINLHGGAFLSGAVLGGRVESIPLAHLGKFRIISVDYRQGYEHR
                     YPAASEDVEAVYRALLQRYPASRIGIYGGSAGGALTAQATAWILDKGLPPPGAIGIFG
                     AGSGGAGDSAYFSAIGTGRQPPMDLMAELRTMKYSYLDGTSPDDILIRPHLAPPEFRA
                     KFPPTLLITGTRAFDMSPAIATHRALCQAGVEAKLHVFDGHGHCFYYDAWLPESADAN
                     ATITRFFRKHLK"
BASE COUNT          539 a         1042 c          997 g          576 t
ORIGIN      
        1 cacgcggctt tcgccgtcat gcacccagac ctgctcgagc agcaccacgt cctcgtagaa
       61 cttcttcacg cggccttcga ccatcttctc gatgatgttc tcgggcttgc cggaggcgcg
      121 ggcctggtcg gtcagcacgg ctttttcgcg ctccagcgtg gccgggtcga cctcagcgat
      181 ggtgagggcg gtggtgcccg gcgtcgcggc aacatgcatg ccgatcttct tgccgaggtc
      241 ctcgatggcc tcatccgcct tgccggtcag gccgacgatg acgccgatct tgcccaagcc
      301 cggacgcacg gcgccatgca cataggcagc ggcaacacca cccggcacgt tgatgacggc
      361 ggcgcggcgc agcgagatgt tttcgccgat cgtggcgatc tggtgcacgg tctcttccgc
      421 cacagtgcgg ccggtgccgg ggtaagcagc ggccttgatg gcctccacgt cctcacccac
      481 ggtcagggca accttggcga cgccttcaac gaaattctgg aaagtctcgt tgcgggcgag
      541 gaagtcggtt tcggcattga cctcgaccag cgccaccttg cccggcgcca gcgccacggc
      601 gaccaggccc tcggcggcaa cgcggccgga cttcttggcg gcggcggaga ggcccttctt
      661 gcggagccag tcgatggcgg cctgcacatc gccattgctc tcggtgagcg ccttcttgca
      721 gtccatcatg ccggcgccgg tcgtctcgcg caggtctttc accagggcag cggtaatctc
      781 agccatgttt atgctcctta tgatgcgttt gcgcgcgagg gtttgggccc ccgcgcgcga
      841 tattcaggtt ccagccgggc gcgcggggcg cccggggtca atcaggcatg cgcctcggca
      901 tcggcttccg gcgccgcgtc caggatcggc tcggcggccg cgcccagatc gatgcccgag
      961 gagcccagct cggcggaaat gccgtccagc accgctgcag cgatcaggtc gcaatagtgc
     1021 gtgatggcgc ggatcgcgtc gtcattgccc ggcaccgggt aggtcacgcc ggcggggtct
     1081 gagttggagt cgaggatggc gataaccggg atgcccagct tgttggcttc ctcaaccgcc
     1141 agcttctcct tgttggtgtc gatgacgaac aggatgtccg gcaggccgcc catatccttg
     1201 atgccgccca gggcgcgctc aagcttctcg cggtcgcggg tgaagttcag gacttccttc
     1261 ttggaatagc cctgggtctc gccgcccagc agctcgtcca tctggcgcag gcgcttgatc
     1321 gagccggtga tggtcttcca gttggtcaac atgccgccga gccagcggtg gttgacataa
     1381 tactggccgc agcgctgcgc ggcgtcggcc acgtagtcag cggcggcgcg cttggtgccc
     1441 acgaacagca cgcggccacc ggcggcggtc acgtcgcgca cggccttcag ggcgcgctcc
     1501 aggagcgggg cggtctgctg caggtcgatg atatggacct ggttgcgcac gccgaacaga
     1561 tacggcgcca tgcgcgggtt ccagcggcgg gtgttatggc caaaatgcac gccggcttcg
     1621 agaagctggc gcagagaaac gtcgggaagt gccattggca gttcgctttc ctataaagtt
     1681 ccggttctat cctccgcggg ggaagcacca aaaggcaccg gacctcaagg cttacgcccg
     1741 gaaaggcccc cgcgtgtgaa tttgcccgca ccatgcgggc agttagtcct gtccgcacca
     1801 tgcggacgat tagtatttgt ccgcaccatg cggacggggc cgcatatggc gcaacggccg
     1861 gaaaaaggca agtataggca taatcacaat gaatatgggg gaaaaatgac ggaaactgct
     1921 cccggcggcc gtctgcaaac caatgaacat ggcgtgattt cagtacagcc cttcaccctc
     1981 ccgctctccg ccgctctcag cccgatggcc gccaagcgcc tggcggcggc gctgcagcag
     2041 gaaagccgca tgcccgattt cagcggcgcc cagaacgagg cccagttccg cagcctggtc
     2101 gacgcctttc gccatgggct gaatgagggc ttcctcaagc cgatgctggc gcgcatggcg
     2161 gtggattttc cggtgcagat gcaaggcgac gtactgggcg gcgtgaatgt cgaggaattc
     2221 accccgcttt ccggcgtgga tgaaagctgc gtgctcatca acctgcatgg cggcgccttc
     2281 ctctcgggtg cggtgctggg cgggcgcgtg gaatccatcc ctctcgccca tctcggcaaa
     2341 ttccgcatca tttccgtgga ttaccgccaa ggctacgagc atcgttaccc ggcggcgagc
     2401 gaggatgtgg aggcggtcta ccgtgctctg ctgcagcgtt acccggccag ccgcatcggc
     2461 atttatggcg gctctgccgg cggcgcgctc acggcgcagg ccacggcctg gatattggac
     2521 aagggtctgc ctccgcccgg cgccatcggt atattcggcg cgggctccgg cggcgcgggc
     2581 gattccgcct atttctcggc cattggcaca ggccgccagc cccccatgga cctgatggcc
     2641 gagctgcgca cgatgaaata cagctatctc gacggcacca gcccggacga catcctcatc
     2701 cgcccgcatc tcgccccgcc cgaattccgc gccaaattcc cgcccacttt gctcatcacc
     2761 ggcacgcgcg ccttcgacat gagcccggcc atcgccaccc accgggcttt atgccaggcc
     2821 ggggtggagg ccaagctgca tgtgttcgac gggcatggcc actgcttcta ttacgatgct
     2881 tggctgccag agagcgctga cgccaacgcc accatcaccc gcttcttccg caagcacctg
     2941 aaatgaaaag agcgcatgtc acgagccatg cgctccaagc ccctgaagac gggcgtaaaa
     3001 ctcagaattt atagcccacg cctacgccaa cggcgagcgg cgcaagctgg gagatgacgc
     3061 ccaccgcgct gccgcccaca tgcgtgccgg taacgatgaa catctgcttg atgtcgaaat
     3121 tggcactcca attgtcggcg ataggcacat cgaa
//
LOCUS       DASQCV010000466         1641 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_763919, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000466 DASQCV010000000
VERSION     DASQCV010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_763919"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..739
                     /locus_tag="VEQ16_07080"
     CDS             <1..739
                     /locus_tag="VEQ16_07080"
                     /inference="COORDINATES: protein motif:HMM:NF045341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63633.1"
                     /translation="GFDSQLRDQLAGMRAKIAPDQIGKYGQLQEWMEDKDDPKNKHRH
                     QSHLWGVYPGSEITPYGTPDLFKAAQQSLIFRGDEATGWSMGWKVNLWARFLDGDHAW
                     KILQNLVQPASDNPARAGLFPNLFDAHPPFQIDGNFGATAGIAEMLLQSADPYGTPTS
                     LTPVQAGEAAFVNLLPALPSALRNGHVTGLRARGGIGVEIEWKSGKLVKAVLKPDFDK
                     AITVRYAGKEKQLQAKAGQNYTFGPEL"
     gene            complement(781..>1641)
                     /locus_tag="VEQ16_07085"
     CDS             complement(781..>1641)
                     /locus_tag="VEQ16_07085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63634.1"
                     /translation="GGYFAPAPYYPGPNYWLTDYMMAQMLQQAYMDGMAAATPPPPYT
                     AQTPLSPEVKQEIADEVNRQLRQEQEAAQAGGNMAAADPFAGGPHIFVASSGIDAGLG
                     NQSCAVTAGDVLAMQAPPPPGSPAANVLVRASKRGDCPVGSVVTVQLQDLAEMQNRMR
                     EEVDRGLADMQSHQGQSGMPPMSGEAAAPATPVSWANQVQPDNTAKTELAQVSQEANR
                     AEQDAVSATLQQNDAPQPTGNIGLGASEDDVVAAFGQPLRTADLGAKKIYIYKDVKVT
                     FQDGKVVDVQ"
BASE COUNT          274 a          547 c          518 g          302 t
ORIGIN      
        1 cggcttcgat tcgcagcttc gcgaccagct agccggtatg cgcgcaaaga tcgcgcccga
       61 ccagatcggc aaatacggcc agcttcagga gtggatggag gacaaggacg acccgaagaa
      121 caagcaccgg catcagtcgc acctttgggg cgtgtaccct ggatctgaaa ttacgccata
      181 cggaacgccg gacctgttca aagcggcgca gcagtcgctc atcttccgcg gcgacgaagc
      241 caccggctgg tcgatgggct ggaaggtaaa cctgtgggcg cggtttctcg atggggacca
      301 tgcctggaag attctgcaga acctggtcca gccggcgtcg gacaacccgg cccgcgccgg
      361 cctcttcccg aatctcttcg acgcgcaccc gccgttccag atcgacggca acttcggcgc
      421 cacggccggc atcgcggaga tgcttctgca gagcgccgat ccttacggca cgccgaccag
      481 cctgacgccg gtgcaggcgg gcgaggccgc gtttgtgaac ctgctgcccg cgctgccctc
      541 ggctttacgc aacggccacg tgacgggcct gcgcgcgcgc ggcggcatcg gtgtggagat
      601 cgaatggaag agcggcaagc tggtgaaggc ggtgctgaag ccggatttcg ataaagccat
      661 caccgtccgc tatgccggca aagaaaaaca gctccaggcc aaggcaggtc aaaactacac
      721 ctttggcccg gagctgtgaa tgcttttttc ggtgcctctg cgtctcctgt gaatgagacg
      781 ctactgcacg tccacgacct tgccgtcctg gaaagtgacc ttcacatcct tgtagatgta
      841 gatcttcttc gcccccaggt cggcggttcg aagtggctgt ccgaacgcgg cgaccacgtc
      901 gtcctcgctc gctcccaacc cgatgttgcc ggtcggctgc ggcgcgtcgt tctgttgtag
      961 cgtggcactt actgcatcct gctcggcacg gttcgcctcc tgcgaaacct gcgccagctc
     1021 ggtcttcgcc gtgttatcgg gctgcacctg gttcgcccag gaaaccggag tggcgggagc
     1081 cgccgcttct ccgctcattg gcggcatgcc gctctgaccc tggtgtgatt gcatgtccgc
     1141 caaaccgcgg tcgacctcct cgcgcatccg gttctgcatt tcggcgaggt cctgcaactg
     1201 caccgtgacc acgctgccca ccgggcaatc gccgcgcttg ctggccctga ccagcacgtt
     1261 ggccgcgggc gaacccggcg gcggcggggc ctgcatggcg agcacgtccc ccgcggtgac
     1321 ggcgcaggac tggttgccta atccggcgtc gatgccgctc gacgcgacga agatgtgcgg
     1381 gccgcccgcg aaaggatcgg cggccgccat gttgccgccc gcttgcgccg cctcctgctc
     1441 ctggcggagt tgccggttga cttcgtcggc gatctcctgc ttcacctcag gcgagagcgg
     1501 cgtctgcgcg gtatacggcg gcggcggcgt cgctgcggcc atgccatcca tgtacgcctg
     1561 ctgcagcatc tgggccatca tgtaatcggt caaccaataa ttcggacccg gataatacgg
     1621 cgccggggcg aaatatccgc c
//
LOCUS       DASQCV010000467         3907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1263547, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000467 DASQCV010000000
VERSION     DASQCV010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3907
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1263547"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(279..1460)
                     /locus_tag="VEQ16_07090"
     CDS             complement(279..1460)
                     /locus_tag="VEQ16_07090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011930764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HYP63635.1"
                     /translation="MISIRRQLLGLGFAAASSLVAMQAAHALTGPTAITIDGGPLGQL
                     SLSGGADGYGFYNNNAVAGAKDKGIYMGDGMVELQKTTGVLQFTIEVGSVGGAIVLGG
                     TQPFSQTSVNFFRTGPLYLGYVTIAPPNSPVTLSAGHLASLEGYESTINWVNPSQFVT
                     SIFAVQNSSSTGVQLNGTEGPVSASVQFGDGNDTGVWNYGQALVTYTIDSNNVANVYG
                     AMNFGRTGPHAFYYGGNTVGTGPTSNAIFTNNWMVGGFYSWTGADLFQKGDSLNVIPE
                     VQYVFAKTDHIMGLDKSTSNFGAAVFGTYAFANTPYSLGGWVEYENSQGAGFWFAGPN
                     SEAVGAALSPTWQYKYLFARANVGLLYLLNNKQFSTSSYNNDGTGKLQFLSTLQAGVL
                     F"
     gene            complement(1766..2173)
                     /gene="crcB"
                     /locus_tag="VEQ16_07095"
     CDS             complement(1766..2173)
                     /gene="crcB"
                     /locus_tag="VEQ16_07095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002729367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HYP63636.1"
                     /translation="MDDIAAYLWVALGGALGSVARYALGNAMTLAVGAEFPWGTLLIN
                     VLGSFIISFFGVLTTSGARFPLPFEARVFVTVGICGGFTTFSSFSLQTVELARAGYAG
                     RAALYVALSAALCIIACMLGYAGATALNAPRQG"
     gene            complement(2173..3624)
                     /gene="purF"
                     /locus_tag="VEQ16_07100"
     CDS             complement(2173..3624)
                     /gene="purF"
                     /locus_tag="VEQ16_07100"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HYP63637.1"
                     /translation="MIDDDKPHEECGVFGAWNVTDAAAITALGLHALQHRGQEATGIV
                     THDGVRFHSHKGLGLVGDNFGDAKIMAGLPGARAIGHNRYATTGETVLRNVQPLFAEF
                     EFGGFAVGHNGNLTNAHTLRQALVRRGCLFQSTMDSEVFVHLIAISLYSTVVDRLIDA
                     VKQVIGAYSLVALTHEALIGVRDPLGVRPLILGRTHGVDGKPGWVLASESCALDIVGA
                     DFVRDVEPGEIVVINDAGVQSLKPFAPQKPRFCVFEYIYFARPDSMMEGNSVYMARKR
                     IGAQLAKEAPVPADVVVPVPDSGVPAAMGFAEESGIAFELGIIRNHYVGRTFIEPTDQ
                     IRHLGVRLKHSANRAMIEGKRVVLVDDSIVRGTTSQKIVEMVRQAGAAEVHMRIAGPP
                     TTHSCFYGIDTPERGKLLAARNSVEEMAKLIGVDSLAFISIDGLYKALGKPGRDAASP
                     AFCDACFTGDYPIPLTDHSEQRSNQLSLLAELS"
BASE COUNT          784 a         1158 c         1272 g          693 t
ORIGIN      
        1 atatgtggtg catggcactt acctggccgc gccgctcggc ctgccgccgg cgcatgggca
       61 gaattatgtc ctgccgggcg gcgctttctt ttccatcgcc gagggcagga tcacgcgcgt
      121 caccaattac tacaacctgc ccaactggct ggcgcaggtg tcctgatcgt cccggcctga
      181 gaaccgtccg ctcacgatga ccgcttaggc atagcggggc gcccaataaa aaggccggac
      241 ccgaaggtcc ggcctcatcg tcttgtattc gtaacggctt agaacagaac gccagcctgc
      301 agggtgctga ggaactggag cttgccggtg ccgtcattgt tgtagctgga ggtggagaac
      361 tgcttgttgt tcagcagata cagcagaccg acgttggcgc gggcgaacag gtacttgtac
      421 tgccaggtcg gcgagagcgc cgcgccgacg gcttcagagt tcggaccggc gaaccagaag
      481 ccggcgccct ggctgttctc atactcgacc cagccaccca gcgagtacgg ggtgttggcg
      541 aaggcatagg tgccgaacac ggccgcgccg aagttggagg tcgacttgtc gaggcccatg
      601 atatggtcgg tcttggcgaa gacgtactgg acttccggaa tcacgttcag gctgtcgcct
      661 ttctggaaca gatcagcgcc ggtccagctg tagaagccgc cgaccatcca gttgttcgtg
      721 aagatagcat tgctggtcgg gccggtgccg acggtgttgc cgccataata gaaggcgtgc
      781 gggccggtgc ggccgaaatt catggcgcca tagacgttag cgacattgtt ggagtcgatc
      841 gtgtaggtga ccagcgcctg gccgtaattc cacacgccgg tatcgttgcc gtcgccgaac
      901 tggacgctgg cggaaaccgg gccttccgtg ccgttgagct gcacgccggt ggatgaggaa
      961 ttctgcacgg cgaagatgga ggtcacgaac tgcgaggggt tgacccagtt gatcgtgctt
     1021 tcatagcctt ccagcgaggc cagatgaccg gccgagaggg ttaccggcga gttcggcggg
     1081 gcaatcgtga catagccgag ataaagcggg ccggtgcgga agaaattgac gctggtctgc
     1141 gagaaaggct gggtgccgcc gagcacgatg gcgccgccga cggagccgac ctcgatggtg
     1201 aattgcagga cgccggtggt cttctgcagc tcgaccatgc cgtcgcccat atagatgccc
     1261 ttgtccttgg caccggcgac ggcgttgttg ttgtagaagc catagccgtc agcgccgccg
     1321 ctcagggaca gctggcccag cgggccgccg tcgatggtga tcgccgtggg acccgtcaaa
     1381 gcgtgggccg cctgcatggc cacgagagag gacgcggccg cgaagcccag tccgagaagt
     1441 tgacgacgaa tgctaatcat tatgcctcct cattgtgcaa taacttgcac gtgatgccta
     1501 aaacgtaacc tggccggatg atgggcgggc ttgaattccc cgcttccgtg ccatctgacg
     1561 gtgacgattt ggcaatctac atgccaagcc cggacacaca ccagacgaaa tggccatggc
     1621 tttcgctttg cagcgtggct gtggcgcaaa tgacacaaaa acttaaccaa aatgagtatt
     1681 ttggtttaag gaagtgaaat tttggcctga aatttaagag aatttcatct gccgccggat
     1741 ctcgcaggca gggactccgg ctgattcagc cctggcgcgg cgcgttcaga gctgtggcac
     1801 cagcataacc cagcatgcag gcaatgatgc ataaagcggc agagagcgcc acataaagcg
     1861 ccgcccgccc cgcatagccg gcacgggcca gttccacggt ctggaggctg aaggaggaga
     1921 aggtggtgaa gccgccgcaa atgcccaccg tgacgaaaac ccgcgcctcg aaaggcagag
     1981 gaaatcgcgc gccagaggtg gtcagcacgc cgaagaagct gatgatgaag gagccgagca
     2041 cattgatgag cagcgtgccc cagggaaact ccgcgcccac cgccagcgtc atggcattgc
     2101 ccagcgcata gcgggccaca ctgcccaacg cgccgcctag ggccacccaa agataggcgg
     2161 cgatgtcatc catcagctca attcggccaa caggctgagc tggttgctgc gttgctcgct
     2221 atggtcggtg aggggaatcg ggtagtcgcc ggtgaagcag gcatcgcaga aggcgggcga
     2281 cgccgcatcg cgccccggct taccgagcgc cttgtacagc ccgtcgatgg agatgaaggc
     2341 gaggctgtcc acgccgatga gcttggccat ctcttccacg ctgttgcgcg ccgccagcag
     2401 cttgccgcgc tccggcgtgt cgatgccgta gaagcaggaa tgggtggtgg gcggcccggc
     2461 gatgcgcata tgcacctcgg ccgcgcccgc ctggcgcacc atctcgacga tcttctggct
     2521 ggtcgtgccg cgcacgatgc tgtcatccac cagcaccacg cgcttgccct cgatcatggc
     2581 gcggttggcg gaatgtttca gccgtacgcc gagatggcgg atctggtcgg tgggctcgat
     2641 gaaggtgcgg ccgacataat ggttgcggat gatgccgagc tcgaaggcga tgccggattc
     2701 ctcggcaaag cccatggccg ccggcacgcc ggaatcgggc accggcacca ccacatcggc
     2761 cggcacgggc gcttccttcg ccagctgcgc gccgatgcgc ttgcgcgcca tatagacgga
     2821 attgccctcc atcatggaat ccggccgggc gaaatagatg tactcgaaca cgcagaagcg
     2881 cggcttttgc ggggcaaaag gcttcaggct ctgcacgccg gcatcgttga tcaccacgat
     2941 ctcgccgggc tccacgtcac gcacgaaatc cgcgccgaca atatccagcg cgcagctttc
     3001 cgaggccagc acccagccgg gcttgccgtc cacgccatgg gtgcggccca ggatcagcgg
     3061 gcgcacgccg agcgggtcgc gcacgccgat cagtgcctca tgcgtcagcg cgaccagcga
     3121 ataggcgccg atcacctgct tcaccgcatc gatcagccgg tccaccacgg tggaataaag
     3181 cgagatggcg atgagatgga cgaagacttc cgagtccatg gtggactgga acaaacagcc
     3241 gcgccgcacc agcgcctggc gcagcgtgtg ggcgttggtc aggttgccgt tatggccgac
     3301 ggcgaagccg ccgaactcga attccgcgaa gagcggctgc acattgcgca gcaccgtctc
     3361 gccggtggtg gcgtagcggt tatggccaat ggcgcgggcg ccgggcaggc cggccatgat
     3421 cttcgcatcg ccaaaattat cgccgaccag gccgaggccc ttgtgggagt gaaagcgcac
     3481 gccgtcgtgg gtgacgatgc ccgttgcctc ctggccgcga tgctgcaacg catgcagccc
     3541 gagcgccgtg atggccgccg catccgtgac attccaggcg ccaaagactc cgcattcctc
     3601 atgcggtttg tcgtcgtcga tcatgaaagc cacctccaac ctcgccggtg ctcaactagc
     3661 tgtgtgacag ctcgatgtcg aggcaccgca gacgcatagg tgagacgcct gcgggcgggg
     3721 gttaattttt taccggacag gagaggggga gaatcaaaat ggcgttgcat cggctgtgtt
     3781 ggaaaataaa tattaacact actgatttaa tagttatagt agggatgttg gggcggcggc
     3841 ggttgaccgc aaggccgcga cgtaaagggt aacaggcgca tccgcgcggc gaggataggg
     3901 tggacta
//
LOCUS       DASQCV010000468         1955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1595989, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000468 DASQCV010000000
VERSION     DASQCV010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1955
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1595989"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..233
                     /locus_tag="VEQ16_07105"
     CDS             <1..233
                     /locus_tag="VEQ16_07105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP63638.1"
                     /translation="SKLTPGGGGDPVELDYAVHNTSQGWRITDVLLGGTISQVALHES
                     DFASLVSSGDASRLIAALQSKIAALQSGTASK"
     gene            255..1376
                     /gene="hpnI"
                     /locus_tag="VEQ16_07110"
     CDS             255..1376
                     /gene="hpnI"
                     /locus_tag="VEQ16_07110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012223342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohopanetetrol glucosamine biosynthesis
                     glycosyltransferase HpnI"
                     /protein_id="HYP63639.1"
                     /translation="MLVLTGIAACCALVGVMQQLLGMALVQRFAAASVPAPKARPPVS
                     VLKPLCGVEPLMEQALESFFLLDYPDYQLVFGVQDEADPVLAVLERLRARYPAREVVL
                     VVDATQHGSNRKVSNLINMFPAARHEILVMSDADIHVPSYFLDRVMAALEEPGVGLVT
                     SLYTALPGTPALATQLGTSQINYNFLPGALLARKLGRQDCLGVTMALNKTVLAEIGGL
                     QAVADHLADDQVLGRLVLARGYKLTLAQLVPATTVPEADFTALYRHELRWARTIRALV
                     PVPYAASVLQISLFWAALTVLLSGAALWSGLFFAAVLAMRVFAARRIDAALRLPHSAN
                     WWSFLLRDSFSTLIFIASFTGNRVDWRGQMMQADPGKLR"
     gene            1393..>1955
                     /locus_tag="VEQ16_07115"
     CDS             1393..>1955
                     /locus_tag="VEQ16_07115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006116947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hopanoid biosynthesis associated radical SAM
                     protein HpnJ"
                     /protein_id="HYP63640.1"
                     /translation="MTLKTLFLQPPSFDGFDGGAGSRYQARREIKSFWFPTWLAQPAA
                     LLPDSTLIDAPPAKLTMADVLPHAKTHQLLIIHTSTPSFANDVKVAEEFKKLNPEMLV
                     GFIGAKVAVQPEESLARAKVLDFVCGNEFDFTIKEIAEGKPLAEVQGIWYRGADGQIV
                     KNEDRPLLMDMDELPFVVDVYKKHLRM"
BASE COUNT          316 a          612 c          622 g          405 t
ORIGIN      
        1 agagcaaact cacccctggc ggtggcggcg atccggtgga gctggattat gccgtgcata
       61 acacttcgca gggctggcgc atcaccgatg tgctgttggg tggcaccatc agccaggtgg
      121 cgctgcacga atccgatttc gcttcgctgg tgagttccgg cgacgcgtcc cgcctcatcg
      181 ccgcgctgca atccaagatc gcggctctgc agagcggcac ggcctccaaa taatgccgga
      241 gttactgggc taagatgctg gttctgaccg gcattgccgc gtgctgcgcc ctggtcggcg
      301 tgatgcagca gctgctgggc atggcgctgg tgcagcgctt tgccgcggcg agcgtgcctg
      361 cgcccaaagc gcgcccgcct gtgtccgtgt tgaagccttt atgcggcgtg gaaccgctga
      421 tggagcaggc gctggaatcc ttcttcctgc tcgattaccc ggattaccag ctggtatttg
      481 gtgtgcagga tgaggcggac ccggtgctag ctgtgctgga gcgtctgcgc gctcgctatc
      541 cggcgcgcga ggtagttttg gtggtggatg ccacgcagca tggcagcaac cgcaaagttt
      601 cgaacctcat caatatgttc cccgcggcgc ggcatgaaat actggtgatg tcggatgccg
      661 acatccatgt gccgtcttat tttctcgacc gtgtcatggc ggcgttggaa gagccgggtg
      721 tggggcttgt cacgtcgctt tataccgcct tgcccggtac gcctgctttg gccacccagc
      781 tggggaccag ccagatcaat tacaattttc tccccggcgc gctgctggcc cgcaagctcg
      841 ggcggcagga ttgcctgggc gtgaccatgg cgttgaacaa aaccgtgctg gccgaaattg
      901 gcgggctgca ggcggtggcg gaccatctgg ccgatgatca ggtgctggga cggctggtgc
      961 tggcgcgcgg ctataagctc actctggccc agcttgtgcc cgccaccacc gtgccggaag
     1021 cggatttcac cgccttgtac cggcatgagc tgcgctgggc ccgcaccatc cgcgctttgg
     1081 tgcctgttcc ctatgccgcc tccgtgctgc agatttcgct gttctgggcg gcgttgacag
     1141 tgctcctgtc cggggccgcg ctctggtcag ggctgttctt tgccgccgtg ctggctatgc
     1201 gcgtgttcgc ggcccggcgc atcgacgcgg ccttgcgcct gccccattcc gccaactggt
     1261 ggagtttcct gttgcgcgat tccttttcca ccctcatctt tattgccagt ttcaccggca
     1321 accgggtgga ctggcgcggc cagatgatgc aagccgatcc cggcaagctc cgttagtgtt
     1381 gagagagacg agatgacgct gaaaaccctg ttcctgcagc ccccctcctt cgatggcttc
     1441 gatggcggcg ccggctcgcg ctaccaggcg cggcgcgaga tcaagagctt ctggttcccc
     1501 acctggctgg cccaacccgc cgccctgctg ccggattcca cgctcatcga cgcgcccccg
     1561 gccaagctga ccatggcgga cgtgctgccc cacgccaaga cgcaccagct tctcatcatc
     1621 cacacctcta cgccctcctt cgccaatgac gtcaaagtcg cggaagagtt caagaagctg
     1681 aaccccgaaa tgctggtggg cttcatcggc gcgaaagtgg ccgtgcagcc ggaggaatcg
     1741 ctggcgcgtg cgaaagtgct ggacttcgtt tgcggcaatg agttcgactt caccatcaag
     1801 gaaatcgccg aaggcaagcc gctcgccgaa gtgcagggca tctggtaccg cggcgccgac
     1861 gggcagatcg tgaagaacga ggaccgcccg ctgctgatgg acatggatga gctgcccttc
     1921 gtcgtggatg tgtacaagaa gcatctgcgg atgga
//
LOCUS       DASQCV010000469         3442 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_764886, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000469 DASQCV010000000
VERSION     DASQCV010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3442
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_764886"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..645)
                     /locus_tag="VEQ16_07120"
     CDS             complement(<1..645)
                     /locus_tag="VEQ16_07120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63641.1"
                     /translation="MIEAHILHLACQLEANMARRHAPQFNALMNFNTVILGAAKEITE
                     GWKCGEWVCTRQQDKRLEFQGTRNHAKRDGRRIILGINDEFCANRQSPYILDAARARL
                     VQCDTRRRVRTAIGEQQKIKVKTLTAVQYEMLALNAHGLGLNNGIVEAAEFLLCVGAQ
                     FPHECRELRLLFREVEIAAREHELRRHAAKIDAFATKQRIPRHDGDIPISGTVQR"
     gene            631..1536
                     /locus_tag="VEQ16_07125"
     CDS             631..1536
                     /locus_tag="VEQ16_07125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63642.1"
                     /translation="MSFDHFMIASRPVPAMLPVDGKAPSVYELDFRRACLPARPDIIF
                     LGDAGGYFSAADAEVQANLIVDNWTGGVPGLDILASNPVILDGGSPLVMLGKEWTLRE
                     RNWAELDFRAIGWTKIRRDEGKLWYLLNETTGRLEGLHICHPAAKSLAATARLLMDYD
                     VRDLRWQLVQPHPSEAEIFKVLARQACVRLRRPYAAEALLRAVIFELPPLDDLSPHGP
                     LPSWLSRENAAMALLSPEPRRALAAVMALESHAGLAGATPGVQLGLKGGHIVLPENAD
                     IHIVEDVAARICEVENASLQVRVRY"
     gene            1636..1848
                     /locus_tag="VEQ16_07130"
     CDS             1636..1848
                     /locus_tag="VEQ16_07130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010510829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaB family protein"
                     /protein_id="HYP63643.1"
                     /translation="MPYSDNQSLPPAVRDHLPVHAQDIFRAAFNNAYAEYAGEAGREE
                     RAFRVAWAAVKKFYIKRSGHWAPRDG"
     gene            complement(1882..2556)
                     /locus_tag="VEQ16_07135"
     CDS             complement(1882..2556)
                     /locus_tag="VEQ16_07135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019013031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HYP63644.1"
                     /translation="MRFTDRRDAGIKLAELLVKKGYHDPVVLALPRGGVPVAAELARA
                     LGAPLDLLFVRKIGAPDNEEFALGAIAEGEPPELVLDRASRDVLSVPQRYLDETITAG
                     LREIARRRSTYLGQKPPVPVAGRTAILVDDGIATGATMLAALRATRRRQPARLVLAVP
                     VAASDTLRRLASEADDMICVQASDMLGSVGEFYYDFSQLRDEDVISILTQANAQPGAS
                     HHNKTP"
     gene            2876..>3442
                     /locus_tag="VEQ16_07140"
     CDS             2876..>3442
                     /locus_tag="VEQ16_07140"
                     /inference="COORDINATES: protein motif:HMM:NF025605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYP63645.1"
                     /translation="MISLAELASPAWMRASLRDKMSVKLGAPGRRSRGRPRIGKAEMI
                     ESELLEGAFRAFLNNGYAGTSLSQIVKSLGISKTTLYSRFASKQELFQAIIVRQTEGI
                     TAGAVLSGGTPLALEEGLRAYATSMMELSLEGDLLQINRLIYSESHRFPELGIAAANR
                     SEHGIRVVSGFIAECAVRDGIPCRDAAGI"
BASE COUNT          642 a          988 c         1084 g          728 t
ORIGIN      
        1 gcgctgcaca gtgccggata tgggaatatc accgtcgtgg cgcgggatgc gctgtttggt
       61 ggcaaatgca tcaattttgg ctgcatgccg gcggagttcg tgctcacgcg ccgcgatctc
      121 cacctcacgg aaaagcaggc gcagctcgcg gcattcgtgc gggaactgcg ctccgacgca
      181 gagcaggaat tccgcagctt caactatccc attgttcagg ccgaggccgt gcgcgttgag
      241 ggcaagcatc tcgtactgaa cggcggtgag tgtcttgact ttgatctttt gctgctcgcc
      301 aatggcagtt cttaccctgc gccgcgtatc gcactggacg aggcgcgccc ttgccgcgtc
      361 gaggatatat gggctttgcc gattggcgca aaactcgtca tttatgccga gaataatccg
      421 tctgccatct cgcttggcat gattgcgcgt gccttggaac tcgagccgct tgtcctgctg
      481 gcgggtgcaa acccattcgc cgcacttcca tccttccgtt atttccttcg cagcgcccag
      541 aatgacggtg ttaaaattca tcagggcgtt aaactgcggc gcgtggcgcc tggccatgtt
      601 ggcttcgagc tggcaggcaa gatgcaggat gtgagcttcg atcatttcat gatcgcaagc
      661 cgccccgtgc cggccatgct gccggtggac gggaaagctc cgagcgtcta cgagctggat
      721 tttcggcgcg cctgcctgcc cgcgcgtccc gatatcattt ttctcggcga tgccggcggt
      781 tatttttcgg cggctgatgc cgaggtgcag gcgaatctca tcgttgacaa ctggaccggt
      841 ggcgtgccgg gcctggatat actggcgtca aaccctgtca tcctcgatgg cgggagcccg
      901 ttggtgatgc tgggcaagga atggacgctg cgcgagcgca actgggccga gcttgatttc
      961 cgcgccatcg gctggacgaa gatccggcgg gatgagggca aattatggta tcttttgaac
     1021 gagacgacag gccggctaga ggggctgcat atctgccatc ccgcggcgaa atccctggcc
     1081 gcaacggcta ggttgctcat ggattatgat gtgagggatc tgcgctggca gctcgtccag
     1141 ccacatcctt ccgaagcgga aatattcaag gtcctggcgc ggcaggcctg cgtccgtttg
     1201 cgtcgaccat atgcggcgga agccttactg cgggcggtga tattcgaatt gccaccattg
     1261 gacgatctgt ctcctcacgg acccctgcca tcctggctgt cacgggagaa tgcggcgatg
     1321 gccttgctct ccccggagcc acggcgggcc ttggcggcgg tcatggcgtt ggaatcccat
     1381 gccggccttg caggggcaac gccgggtgtc cagctgggcc tcaagggcgg gcatattgtg
     1441 ctgccagaga atgcggacat tcatatcgtg gaagatgtgg cggcgcgcat ttgcgaggtg
     1501 gaaaacgcca gcctccaggt cagggtccgc tattagaaat tcaagggacc gccttgctcc
     1561 ttgtatcatt tgcggcatgg aagtctgcat tgtcagtctc tgccttgttg atatcatgtg
     1621 atctatcggt gcatcatgcc ctattcggat aatcagtccc taccgcctgc ggttcgtgac
     1681 catttgcccg tgcatgcgca ggatattttc cgcgcggcgt tcaataatgc ctatgccgaa
     1741 tatgccggcg aggcgggtcg tgaagagcgg gcatttcgcg tggcatgggc cgctgtcaag
     1801 aaattctaca tcaagcgctc cggtcattgg gcgccgcgcg atggatgaga catgacggac
     1861 accgcaagga gagacgaggg atcacggcgt tttattgtgg tggctggcgc caggttgggc
     1921 gttcgcctgg gtgaggatcg agatcacatc ctcgtcccgc aactgtgaga aatcgtaata
     1981 gaattcaccg acggagccaa gcatgtccga ggcctgcacg cagatcatat catcggcctc
     2041 ggatgcgagg cggcgcaatg tgtcgcttgc agccaccggc acggccagca ccagacgcgc
     2101 cggctgccgc cgccttgtgg cgcgcagagc tgccagcatg gtggcgccgg ttgcaatgcc
     2161 gtcatccacc agaatggctg tgcggcctgc aaccggcacg ggaggcttct ggccaagata
     2221 ggtggagcgg cggcgcgcaa tctcacgcaa acctgccgtg atggtctcgt cgagatagcg
     2281 ctgcggcacg gacagaacgt cgcgcgaggc gcggtcgagc acgagttccg gcggctcgcc
     2341 ttcggcaatg gcgccgagcg cgaattcctc attgtccggg gcgcctatct tgcgcacgaa
     2401 caggaggtcg agcggtgcgc cgagggcgcg ggcgagttcc gccgccaccg gcacgcctcc
     2461 gcgcggcagg gcgagcacca ccgggtcgtg gtaacctttc ttcaccagga gttcggccag
     2521 ttttataccg gcatcacgcc ggtccgtgaa ccgcatcggg cgccctttcg tacagacaaa
     2581 gcccaaacca cctgtagcgc catacggcgc caaacccatt atttgtcatt ataaaccggc
     2641 gccgcctgcc acgcgcggca attttgtgtg ccggacgttc accggcagaa agtcttttgg
     2701 tgcccccttt ttcccaaaaa agagggtctc tttcctcccc gcattcttgc gggcatgagc
     2761 atcgccgctc tgggcaacac caacctgccc atgcttatat aatactgtat gggtctattt
     2821 tggctgccgt gaagcgggcg ttacgataga taaaccataa aaggcaacga aaagaatgat
     2881 cagtttggct gaacttgcgt cgccggcatg gatgagggcc agcttgaggg acaagatgag
     2941 tgttaagcta ggtgcgccgg ggcggcgttc acgcgggcgg ccgcgtattg gcaaggccga
     3001 aatgatcgag agcgaactgc tcgagggcgc gttcagagcg tttctcaata acggctatgc
     3061 gggcacgtcg ctcagccaga tcgtcaagtc gctgggcatt tcaaaaacca cgctctattc
     3121 gcgctttgcc tcgaaacaag agctttttca ggcgattatc gttcgacaga ccgaggggat
     3181 aacggccggc gccgtcttgt cgggcggtac gccgctggcg ttggaggaag ggttgcgggc
     3241 ctatgcgacc agcatgatgg agctgagcct cgagggtgac ctgctccaga tcaaccgcct
     3301 gatttatagc gagtcgcatc gtttcccgga gctcggcatt gccgcagcca accgctccga
     3361 gcatggcatc agggtggtat ccgggtttat cgccgaatgt gccgtccggg acggcattcc
     3421 ctgccgggat gctgctggaa tc
//
LOCUS       DASQCV010000470         2359 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1762675, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000470 DASQCV010000000
VERSION     DASQCV010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1762675"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..261
                     /locus_tag="VEQ16_07145"
     CDS             <1..261
                     /locus_tag="VEQ16_07145"
                     /inference="COORDINATES: protein motif:HMM:NF016292.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate binding protein"
                     /protein_id="HYP63646.1"
                     /translation="RYRVPAIYYNRFFSELGGLISYGDVRGEQFRLAAGYIDRILKGE
                     KPDDLPVQAPTKFELIINLKTAKALGLTISRDFLLIADEVIE"
     gene            538..2247
                     /locus_tag="VEQ16_07150"
     CDS             538..2247
                     /locus_tag="VEQ16_07150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63647.1"
                     /translation="MLARTALASIVQIAALGFALPALAGGGAGAGGATGGADSATGAG
                     GFGSNGINDGGFAGGGGGGGAGVTGGNGGTGVNGGACFVGGVGGVGGPTTGASGGSTC
                     VDAIFGGGGGGGAHGAVVSTSGGLASSTGGNGGRGGNAVEGGGGGGGAGGYGAVVNGS
                     SLTLTSSGTVAGGNGGNGGQGGSPFGSGGGGGTGGIGLDFTGTNNSLANTGTINGGAG
                     GAGGAAPGIFSANGGSGGSGGAGLTGSGITITNGGTISGGNGGPGGAGTISNGANGAG
                     GAGVVGSGMTIINSGKIAGGLAGDGITQADAIIFTGGANSVGSTGTISGGINVQGGSF
                     APALSTCAIGTPLSFGGPIALASGTTYVVRVSPSAADSLTASGVAALTGATVNAQFST
                     GSYAPKSYTILTATGGLGGTTFSSLTTTNLTNFSGQVGLFTERHGCLAQPHRCTWHRL
                     KSQRESAKGRKRHQQLFQQCRNPAARLQCTVWFDRQPTLHRAVATFGLGGDWCRARCI
                     PTDDRVPGTADRPVRQWARQWWRSWSGAWVRRRRSGQSTAGHRACLRRTRQGAAAKTG
                     RRL"
BASE COUNT          410 a          702 c          811 g          436 t
ORIGIN      
        1 cgctacagag tgccagcgat ctattacaat cgcttttttt cggaactagg cggcctgatc
       61 tcttatggtg acgttcgcgg cgaacagttt cgcttggcgg cagggtacat cgaccgcatc
      121 ctcaagggcg agaagcctga cgaccttcca gtgcaggcgc caacaaagtt tgagctgatc
      181 atcaatctca agaccgcaaa agcactaggt cttacaatct ctcgcgattt tctgctgatt
      241 gccgacgagg tgattgaata gaggcgttgt ttgccgcact acatatgtct gcttttgacc
      301 caaaccggac atcagaggca ctcctttatt tttaagaaac aggtgctgtc tcccggaaac
      361 cacaaccggc ccaaaagttt ttttcgtcac gtcatttcgg tcctggcgct ctggttctga
      421 agcaaacacc ctgtacagtt ccactcgggg cggatcgtgc cagagggcgc aggggtgggc
      481 tctcaaccaa gtattctgaa agaatgcgac ggggcacgac gcgccaggcg cgcgcgtttg
      541 ctcgcccgca ctgcgcttgc tagcatcgtt cagattgctg cactgggatt tgcgcttcct
      601 gcattggcgg gtggcggcgc tggcgcagga ggagccactg gcggtgccga cagcgcgacc
      661 ggtgcgggcg gctttggcag caatggcata aacgacggtg ggtttgccgg tggcggtggc
      721 ggcggtggcg ccggcgtgac gggcgggaat ggcgggacgg gcgtcaatgg cggcgcctgc
      781 tttgtcggcg gcgttggcgg tgtgggcggc cccaccacgg gcgccagtgg cggtagtact
      841 tgcgtcgatg cgatttttgg cggaggaggc ggcggcgggg cgcatggcgc ggtggtttcg
      901 acctcgggcg ggcttgccag cagtaccggc ggcaacggcg gaagaggtgg caacgcggtg
      961 gagggcggcg ggggtggcgg cggagcgggt ggctacggcg cggtggttaa cggcagcagc
     1021 ttgacgctga ccagcagcgg gaccgtggcg ggaggcaacg gtggcaatgg cggccaaggc
     1081 ggctcgccct tcggttcggg cggcggcggt ggcaccggcg ggatcgggct cgatttcacc
     1141 ggcacgaata attccctcgc gaacacaggc actattaacg gaggagcagg tggcgccggc
     1201 ggagcggcgc ctggaatttt ctccgccaat gggggcagcg gcggcagtgg tggcgccggc
     1261 ctcaccgggt ccggcataac catcaccaac ggcggcacga tcagcggcgg caatggtggc
     1321 ccgggcggtg ccggcactat cagcaacggg gcgaatgggg ctggcggcgc cggcgtagtc
     1381 ggctcgggca tgactatcat caacagcggg aaaattgctg ggggcttggc gggcgacggg
     1441 ataacgcagg ccgacgccat catcttcacc gggggggcca acagcgtcgg cagcaccggc
     1501 acgatctccg gcggcatcaa tgtgcagggt ggctcattcg ctccggcgct ctccacttgc
     1561 gccatcggca cgccgctaag cttcggcggt ccgatcgcct tggcctccgg cacgacctat
     1621 gtggtccggg tgtcgccgag tgccgcggat tcgttgaccg cctcgggcgt ggcggcgctg
     1681 accggcgcca ccgtgaacgc gcaattctcc accggcagct acgcgccgaa gagctatacc
     1741 atcctgaccg ccaccggcgg gctcggtgga acgacattct cttcgcttac gacgaccaat
     1801 ctaactaact tttcgggcca ggttgggtta ttcaccgagc gacacggatg tcttgctcaa
     1861 cctcaccgct gcacttggca tcggctcaag tctcagcggg aatcagcaaa aggtcgcaaa
     1921 cgccatcagc agctttttca acagtgtcgg aaccctgccg cccggcttca atgcactgtt
     1981 tggtttgacc ggcagcccac tctccaccgc gctgtcgcaa ctttcgggct aggcggggac
     2041 tggtgccgag cgcgttgcat tccaactgat gaccgagttc ctgggactgc tgaccgaccc
     2101 gttcgtcagt gggcgcggca atggtggcgg tcttggtccg gcgcctgggt tcgccgccga
     2161 agatcaggac agtctaccgc cggacatcgc gcgtgcttac gccgcactcg tcaaggcgcc
     2221 gccgccaaga ccggtcgccg cctttgatca gcggtggagc gtgtggagcg ccgcgtttgg
     2281 cggcagcaac acgaccaacg gcaacacggc ggccggctca aataatgtct cggcacaaac
     2341 ctacggcggc gcggtcggt
//
LOCUS       DASQCV010000471         2865 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2424412, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000471 DASQCV010000000
VERSION     DASQCV010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2865
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2424412"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..616)
                     /locus_tag="VEQ16_07155"
     CDS             complement(<1..616)
                     /locus_tag="VEQ16_07155"
                     /inference="COORDINATES: protein motif:HMM:NF013857.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ModD protein"
                     /protein_id="HYP63648.1"
                     /translation="MGPPYWPVPAADLTRLLQDDAGFGDLTTRALGIGAVAGEICFAA
                     RDPLRLCGVEEAAGLLAGLGARIIFQAASGADIAAGTLVLHAEGSAAVLHAAWKMAQL
                     VMEFASGVASEAAAIVAAARSVTPGMVVLVTRKSTPFTRALSLKAALAGGAEIHRLGL
                     HDSIMIFPEHLAFFPGGVAEAVAAARRHAPERKVMVEVTGEPGLQ"
     gene            complement(619..930)
                     /locus_tag="VEQ16_07160"
     CDS             complement(619..930)
                     /locus_tag="VEQ16_07160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HYP63649.1"
                     /translation="MNATVNNGAAAPKVEEKLFQNRYLVDAGRPHITIKAGDTPSAAL
                     RSLVTTCPAGCYSLTDKGQVEIAADGCMECGTCRVVTAKTGEIEWHYPRGGYGILYKF
                     G"
     gene            complement(927..2234)
                     /locus_tag="VEQ16_07165"
     CDS             complement(927..2234)
                     /locus_tag="VEQ16_07165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014239764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP63650.1"
                     /translation="MIEQKFDAIVVGAGASGNAAALTMAKLGLKVLQLERGEYPGSKN
                     VQGAILYADALEKIIPDFRDDAPLERHVIEQRMWTMTESSHVGMHYRSDDFNEERPNR
                     YTIVRAQFDKWFSRKVRDAGVTLLCETTVTELIRDARGRVIGVRTDRADGIAFADVVL
                     LAEGVNGLVGQRSGLRPVVTPESVALAVKEMHFLPREVIDERFNLQGNEGVVIEAMGT
                     ITNGMTGTAFLYTNGESISVGIGCIVADFEGTGQTPYGLLESFKNHPSIKPLLAGSEC
                     KEYAAHLIPEGGYKAIPQLYGDGWLVVGDAGQFVNAVHREGSNLAMTTGRIAGETIAW
                     LKTRRDPATAANLTEYQRRLEASFVMKDLKKYKNIPDFLHKRAGQVFGLYPRLITAAA
                     QTWFRVDGKDKRAKEAEIFKSFRAGRSLFGLLGDAFKLARAWR"
     gene            complement(2249..>2865)
                     /locus_tag="VEQ16_07170"
     CDS             complement(2249..>2865)
                     /locus_tag="VEQ16_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012973272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HYP63651.1"
                     /translation="AATRPTFGGSLLCTIMTLNFRPQMATVRPRVLAMPARTPGRSGS
                     ILPCALGIAEEDIVTKVLDFIADRDSNKAQLAYADIVVAGGLGLRSAENFQLVKNLAE
                     VLGAEYGGSRPLVQKGWITSDRQIGQTGKTIRPKLYIAAGISGAIQHRVGVEGADLIV
                     AINTDPNAQIFQFAQLGIVADAVELLPKLTEAFASHLSVNRLAG"
BASE COUNT          519 a          897 c          914 g          535 t
ORIGIN      
        1 cctgcaggcc cggttctccg gtcacctcca ccatcacctt gcgctcaggg gcgtggcgcc
       61 gcgcggcggc cacggcttcc gccacgccgc cggggaagaa tgcgagatgt tccgggaaga
      121 tcatgatgct gtcgtgcaag ccgaggcggt ggatttcagc gccgccggcg agtgctgcct
      181 tgagtgacag ggcccgggtg aagggggtgg atttgcgtgt gaccaaaacc accatgccag
      241 gggtcacgct gcgcgccgca gcgacgatcg cagccgcctc gctggccacg ccggaggcaa
      301 attccatgac gagctgcgcc attttccatg cagcatggag gaccgcggca gagccctcgg
      361 cgtgcaagac aagcgtaccg gcggcgatat ccgcgccgct tgccgcctgg aagatgatgc
      421 gtgcgccgag tccggcgagc agccccgccg cctcctcgac gccgcagagg cgcaaaggat
      481 cgcgggcggc gaagcaaatt tctccggcca cggcgccgat gccgagggcg cgtgtggtga
      541 ggtcgccgaa tccggcgtca tcctgcagca gcctggtgag atcggccgcc gggaccggcc
      601 agtagggcgg gcccatgctc agccgaactt atacaatatt ccgtagccac cgcgcggata
      661 atgccactcg atctcgccgg tcttggcggt gacgacacgg caggtaccgc attccatgca
      721 gccgtcggcg gcgatttcga cctggccctt atcagtcagg ctgtagcagc cggccgggca
      781 ggtggtgacg agcgagcgca aggcagccga gggcgtatcc cccgctttga tcgtgatatg
      841 cggcctgccg gcatcgacca gataacgatt ctggaacagt ttctcttcga ccttcggggc
      901 ggcagccccg ttattgactg tagcgttcat cgccatgccc tcgccagttt aaatgcatca
      961 cccaagagac cgaaaagcga ccgcccggcg cgaaaactct tgaaaatctc ggcttccttg
     1021 gcacgtttgt ccttgccgtc gacacgaaac caagtttgcg cggccgccgt gatgaggcgc
     1081 gggtagaggc cgaacacctg ccctgcgcgc ttgtgcagga aatcggggat attcttgtat
     1141 ttcttgagat ccttcatgac gaagctggct tccaggcgac gctggtattc ggtcagattt
     1201 gccgcggtgg cgggatcgcg ccgggttttc agccaggcga tcgtctcgcc ggcgatgcgc
     1261 cccgtggtca tggcgaggtt ggagccttcg cgatgcacgg cattcacgaa ttgcccggca
     1321 tcccccacca ccagccagcc atcgccatag agctgcggaa tcgccttgta gccgccttcg
     1381 gggatgaggt gtgccgcata ttccttgcac tcggagccgg ccagcagcgg cttgatgctg
     1441 ggatgattct tgaaggattc gagcagccca tagggtgtct gtccggtgcc ctcgaaatcg
     1501 gcgacgatgc agccgatgcc gacggagatc gattcgccgt tggtataaag aaaggccgtg
     1561 cccgtcatgc cgttggtgat ggtgcccatc gcctcgatga cgacaccttc attgccttgc
     1621 aggttgaaac gctcgtcgat cacttcccgc ggcagaaaat gcatctcttt caccgccagc
     1681 gcgacgcttt ctggcgtgac caccgggcgc aggccggaac gctggccgac cagcccgttc
     1741 accccttcgg ccagcagcac cacatcggca aaggcgatgc cgtcggcccg gtccgtgcgt
     1801 acgccgatga cccggccgcg ggcgtcgcgg atcagttccg tcaccgtggt ttcgcacagc
     1861 agcgtcaccc ccgcatcgcg caccttgcgg ctgaaccatt tatcgaattg cgcgcgcacg
     1921 atggtgtagc ggttgggccg ctcctcgttg aaatcatcgg aacggtaatg catgccgaca
     1981 tgggagcttt cggtcatcgt ccacatgcgc tgctcgatga catggcgctc gagcggcgca
     2041 tcgtcgcgga aatccgggat gattttttcc agcgcatcgg catagaggat cgccccctgc
     2101 acattcttgg agccgggata ttcgccgcgt tcaagttgca gcactttcag cccgagcttg
     2161 gccatggtga gggcggcggc attgccggag gcgccggcgc cgaccacgat ggcatcgaat
     2221 ttctgctcga tcatgttttt gctcctcctc agcccgcgag ccggttgacg gataaatggc
     2281 tggcaaacgc ctcggtgagt tttggcaaaa gctcgacggc gtcggcaacg ataccaagct
     2341 gcgcaaactg gaagatctgt gcgttgggat cggtgttgat ggcaacgatc aaatctgccc
     2401 cttcgacgcc gacccggtgc tggatcgccc cggaaatccc agccgcgata tagagcttgg
     2461 gacggatggt cttgccggtc tggccgatct gccggtcgga ggtgatccag cccttctgca
     2521 ccagcgggcg cgagccgcca tattcggcgc ccagcacttc ggcgagattt ttcacaagct
     2581 gaaaattctc cgccgagcgc aggccaaggc cgccggcgac aacgatatcg gcataggcaa
     2641 gctgtgcctt gttggaatca cgatcggcga tgaaatcgag cactttcgtg acgatatcct
     2701 cttccgcaat gccgagcgcg cagggcagga tgctgccgga gcggcccggc gtgcgcgccg
     2761 gcatggccag cacgcgcggg cgcaccgttg ccatctgcgg acggaaattc agagtcataa
     2821 tcgtgcagag cagagagcca ccgaaggtcg ggcgggtcgc ggcga
//
LOCUS       DASQCV010000472         1725 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1264210, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000472 DASQCV010000000
VERSION     DASQCV010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1264210"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..224
                     /locus_tag="VEQ16_07175"
     CDS             <1..224
                     /locus_tag="VEQ16_07175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63652.1"
                     /translation="TSKQDGVNHRANRPSPSAYAETASTGGAFMQELVMKLGAARDQS
                     RTARRLAHGRPEGGGSMVSELARRAERSA"
     gene            complement(254..523)
                     /locus_tag="VEQ16_07180"
     CDS             complement(254..523)
                     /locus_tag="VEQ16_07180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63653.1"
                     /translation="MNEKKLSGKMSTAFARSGPNAREVRRGAALITRPTDDVAAVRAL
                     IRDLERAKKLARECGFLYLLVGINVSLKDARERERVLAAKEQAPP"
     gene            1423..1659
                     /locus_tag="VEQ16_07185"
     CDS             1423..1659
                     /locus_tag="VEQ16_07185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63654.1"
                     /translation="MREIGRAMKRSHARRWRELRQLYRDHDTGKFREDFLKHCAALRD
                     TQARQREELRTAWETCNAERSAALAPLAAPVSAI"
BASE COUNT          339 a          523 c          564 g          299 t
ORIGIN      
        1 caacatcgaa gcaggacgga gtaaatcatc gcgccaatcg cccctcacca agcgcttacg
       61 ctgaaacagc ctcgacgggt ggcgctttca tgcaggagct ggtgatgaaa ctcggtgccg
      121 cgcgcgatca atcgcgcacc gcccggcgcc tggcgcacgg taggccagaa ggcggtggat
      181 caatggtaag cgagcttgcg cggcgggcgg agcgctcggc gtaacggaac tggaggcgat
      241 ttggtcggca ccctcagggc ggtgcctgct ccttcgccgc aagcacccgc tcccgttcgc
      301 gagcgtcctt aagggatacg ttaatcccga cgagcaagta gagaaaaccg cattctctgg
      361 ccagtttttt ggcgcgctcg aggtcacgga tcagcgcgcg cacggccgcg acgtcatcgg
      421 ttgggcgcgt gataagggca gcaccgcggc gaacttcacg ggcgtttggt ccgctgcgcg
      481 cgaaagcggt gctcatcttg cctgaaagct tcttctcgtt cattttcgga caaccgaccg
      541 atgtcagtcg cgatggtcga cgcagcatgc acgcgccatt ttcccttcct gccctaacat
      601 cggcgggttt tgcggatgct gcattgaggc agatcaaagg cgcggaggtg gcaaacggcg
      661 gcggcgttgt catcagtgcc catcgcggtg gcggaacggt tttcggaacg taatcccaac
      721 gcgggatgtt tgatcatcaa cggtcacggg ggggccgatg atccaccccg agggggcgca
      781 ctcatcgctg cccttcaata aataaataag catcggccac agagagatac gcttgccccc
      841 agaagagggg cgcaggctcc cgcctgcaat ggccgaggag gcgcgctgtg ccaatgtcgc
      901 tttatcgatg ccgttacttg gaccgcacct tcaatgtgtt tcaaatccag ggcatagctt
      961 gtgaaaacga caccgaagcc atagtaatgg ctcgacgcat gagtgcgaat accggtgccg
     1021 acgggtttga gctatggcag gacgaacgct gcgtccatgt ggaaaccatg ccctcggcca
     1081 gaaaacgcgc ggaatcgtag attggaagcg tagcgcggcg agggtggtcg tgttggcgag
     1141 gcgggttagc tgatccggtc tcagcatcac tgcgagatcg gcgtgacacc cggccggttt
     1201 cgcgcctcgc tggcctgagc cgggcggact gtccaccggg tagcgcctta ccgtccggcc
     1261 gatgggctgc cgcccatggc gtcaggaaca acgccagaca gggctgcggc gaattcgtcc
     1321 accatccgcg ggcgccgcgc ccggagtttg aattcagcca ggcgaccggc gatcatttgg
     1381 ggcggtgtcg tggcgaccgc acagcggcag caggacgccc atttgcgtga gatcgggcgg
     1441 gcgatgaagc gcagccatgc ccgccggtgg cgtgaattgc gccagctcta ccgcgaccac
     1501 gacacaggca aattccggga ggattttcta aaacactgcg ccgcgctgcg cgacacgcaa
     1561 gcccggcagc gggaggagtt gcggacggca tgggaaacct gcaacgccga gcgaagcgcc
     1621 gccctcgctc ccttagcggc gccggtttcg gccatttgat cactaagtcc cgtcaggttg
     1681 ccgcccggcc gcgccagcga aagaacaaga cccgagccaa tcggg
//
LOCUS       DASQCV010000473         1550 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2425323, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000473 DASQCV010000000
VERSION     DASQCV010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2425323"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1004
                     /locus_tag="VEQ16_07190"
     CDS             <1..1004
                     /locus_tag="VEQ16_07190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013635015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HYP63655.1"
                     /translation="YGMATMVYFQFVFAAITPIILFGAILGRVSFKAWAIFVPLWTTF
                     IYSIGAYSLWGGGWLGSMGVVDYSGGFVIHLSSAASGFTAAAVVGPRTARDRENFQPN
                     NLLITLAGAGLLWLGWSGFNGGDPYTANVDAGAAVLDTHVATATSLLTWTFLDIIAYG
                     RPSILGVVNGMICGLVAITPAAGYVNGIGAIILGAASSALPWVTWNWLGKTALMRKVD
                     DTMGVIHTHGVAALVGGLGVGILADPKMIEYFGTNGDSNFSVTGAWYGNPHQFVLQCI
                     GAGFIIAVNVVGTFILLKLISIFVPLRMDAEALVVGDDAIHAEEAYAIASEGRMGAD"
     gene            1215..>1550
                     /locus_tag="VEQ16_07195"
     CDS             1215..>1550
                     /locus_tag="VEQ16_07195"
                     /inference="COORDINATES: protein motif:HMM:NF015149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HYP63656.1"
                     /translation="MGWEQNTAAVKRRCMIFRLLGAAALWLGLSVAAQANTLVDLGYA
                     NGLVLRGPGASQTVYFPLPANTQGATLSLNFTASAALNANASVTVLADGVPLATVPDS
                     APNGTAQIAI"
BASE COUNT          237 a          520 c          461 g          332 t
ORIGIN      
        1 gttatggcat ggcgacgatg gtgtatttcc agttcgtctt cgcggccatc acgcccatca
       61 tcctgttcgg cgccattctc gggcgcgtca gcttcaaggc ctgggccatc ttcgtgccgc
      121 tctggaccac cttcatctac tccatcggcg cctattcgct atggggcggc ggctggctcg
      181 gctccatggg tgtggtcgat tattccggcg gcttcgtcat tcatctctcc tctgcggcct
      241 ccggcttcac cgccgccgcc gtggttggtc cgcgcacagc gcgcgaccgt gagaatttcc
      301 agcccaacaa cctgctcatc accctggctg gcgccgggct gctctggctc ggctggtccg
      361 gcttcaatgg cggcgaccca tacaccgcca acgtcgatgc cggcgcggcg gtgctggaca
      421 cgcatgtcgc caccgccacc tcgctgctca cctggacctt ccttgacatc atcgcctatg
      481 gccgtccctc catcctgggc gtggtcaacg gcatgatctg cggcctcgtc gccatcaccc
      541 cggcggccgg ctatgtgaat ggcatcggtg ccatcatcct cggcgccgct tcctcggccc
      601 tgccctgggt gacctggaac tggctcggca agaccgctct gatgcgcaaa gtggacgaca
      661 cgatgggcgt catccacacc catggcgtgg cggccctggt cggcggcctt ggcgtcggca
      721 tcctcgccga tccgaagatg atcgagtatt tcggcaccaa cggcgacagc aatttcagcg
      781 tcaccggcgc ctggtacggc aacccgcacc agttcgtgct gcaatgcatc ggcgccggct
      841 tcatcatcgc cgtcaatgtc gtcggcacct tcatcctgct gaagctcatc agcatcttcg
      901 tgccgctgcg catggatgcg gaagccttgg tggtcggcga cgacgccatc catgcggagg
      961 aggcctatgc catcgcctcc gaaggccgga tgggcgcgga ctgaggctca tgcgatcagg
     1021 cggggttcca tcggcacagc atgccggtgg aaccccgcga tatttttata acaattcccg
     1081 tttcaccttt gtgaggcttc tcagccatct gacaaatggc tgagccaata cccatctaac
     1141 gctcggtccc tcttcgcaat gcctgttccg gcaggccgat tttgccgctg ggcaagatat
     1201 tcaggaggtc gagtttgggc tgggagcaaa atacggctgc cgtgaaacgg cgctgcatga
     1261 ttttccggct gcttggcgcg gcggccttgt ggctgggtct ttccgttgcc gcgcaagcca
     1321 atacgcttgt cgatctgggc tatgccaatg ggctggttct gcgcgggccg ggggccagcc
     1381 agactgtcta tttcccgctg cctgccaaca cgcagggtgc gacgctcagt ttgaatttca
     1441 ctgcttccgc ggcgctgaac gccaacgcca gcgtcactgt gctggccgac ggcgtgccgc
     1501 tcgccacggt gccggacagc gcgcctaacg gcacggcaca gattgccatt
//
LOCUS       DASQCV010000474         2557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1763946, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000474 DASQCV010000000
VERSION     DASQCV010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2557
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1763946"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..551)
                     /locus_tag="VEQ16_07200"
     CDS             complement(<1..551)
                     /locus_tag="VEQ16_07200"
                     /inference="COORDINATES: protein motif:HMM:NF012874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63657.1"
                     /translation="MDLSFYSNFSNSLVAQEAQINSLQQQISTGLAVQTPDQDPAAYE
                     TAALGTDQVSRLSNDNTTQASIQVQLGSANNAYSSMTNLLNNVQSIVEQALNGTTNSQ
                     NMNALAGQVNSAMQQMLAIGNTTAPNGTYLFGGSRGDLAPFQPDASGNIVYYGDGGSS
                     QASIGETSTASTIANGTVFVSAL"
     gene            complement(617..1027)
                     /locus_tag="VEQ16_07205"
     CDS             complement(617..1027)
                     /locus_tag="VEQ16_07205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63658.1"
                     /translation="MNPRTLVRLDKLAAEREARLQEAIRRHGATLSQGQAQREILAAY
                     RARLAASWQEGAVLPAAQARRASQFAAGAEAAALQIERNETAASAQLQEEAAALAQLK
                     AHRRKLKDKLRAAARAEAAEAEARAERDRPWRRP"
     gene            complement(1024..2367)
                     /locus_tag="VEQ16_07210"
     CDS             complement(1024..2367)
                     /locus_tag="VEQ16_07210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliI/YscN family ATPase"
                     /protein_id="HYP63659.1"
                     /translation="MISAEHIRALARERVQAALKSDPVRRYGRIVRSNGEVLHASGIR
                     APVGARCLIEMEHGSALPAEVVGFEAGALLVMPEQGTRGVTRGARVHVESSSPAPLMG
                     MALLGRVLDARGQPLDAMPPPDVTHPWPLMGVPINPMARLRIEHPFDTGIRAINALAT
                     LGRGMRVGLFAGSGVGKTTLLGMMARHARADVVVVGMIGERGREIREFIEDHIGPARP
                     RSVVIASPADDTALGRVHGAYRAAAIAEFFRSEGKHVLLVVDSLTRLAMGLREIGLAA
                     GEPPATRGYPPSVFGALAAYVERAGNGDAAQGSITALYTVLVEGDDHVGDPVADTARS
                     VLDGHIVLSRALTESAIYPPIDITASLSRPMPMLVPTEHLQHAAHFRALWTRRAEKQD
                     IIDLGAYAPGRDRLLDEAIRRAPSMEALLRQDVNEGADLAASAAVLAQALAEGSP"
     gene            complement(2364..>2557)
                     /locus_tag="VEQ16_07215"
     CDS             complement(2364..>2557)
                     /locus_tag="VEQ16_07215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63660.1"
                     /translation="DRVSADTAQLVADEKITPGGAVVEIITQDGDPVDKVEWDATLQG
                     RLATIRTALGLPGGTGETP"
BASE COUNT          378 a          864 c          868 g          447 t
ORIGIN      
        1 tgcagtgctg agacaaacac cgtgccattg gcgatggtgc tggcggtgga ggtctcgccg
       61 atgctggcct gggagctgcc gccatcgccg taatagacga tattgccgct agcatcgggc
      121 tggaatggcg ccaggtcgcc gcgcgagccg ccgaagagat aggtgccatt gggcgcggtg
      181 gtgttgccga tggcgagcat ctgctgcatc gcgctgttca cctgcccggc cagtgcattc
      241 atgttctggc tgttggtggt gccgttcagc gcctgctcga cgatactctg cacattgttc
      301 agcagattcg tcatcgagct ataggcgtta ttggccgaac cgagctgcac ctggatgctg
      361 gcctgggtgg tattgtcgtt gctcagccgg ctcacctggt cggtgccgag cgcggcggtc
      421 tcataggcgg ctggatcctg gtccggcgtc tgcaccgcga ggccggtgga gatttgctgc
      481 tgcagcgagt tgatctgcgc ctcttgcgcg accagcgaat tggagaaatt ggaatagaaa
      541 ctcagatcca tgatgtgctc ctgaagctgg gcggccaagg gtggggggtg aaaaacgaaa
      601 tctcatgggt gccaatttat gggcgccgcc agggccggtc gcgttcggcg cgcgcctccg
      661 cttccgcggc ttcggcgcgc gccgcggcgc gaagtttatc cttgagcttg cggcgatgcg
      721 ccttgagctg cgccagggcg gcggcctctt cctgcagctg cgcgctcgcc gccgtctcgt
      781 tgcgttcgat ctgcagggcg gcggcctccg ctccggcggc gaactggctt gcgcggcgcg
      841 cctgcgcggc cggcagcacg gccccctcct gccagcttgc cgccagcctt gcccggtagg
      901 ctgccaggat ctcgcgctgc gcctggccct ggctcagcgt ggcgccatgg cgtcggatcg
      961 cctcttgcag ccgcgcttcg cgctcggcgg ccagcttgtc gagacggacg agggtgcgcg
     1021 gattcatggc gaaccctccg cgagagcctg cgccaggact gccgcgctgg cagcgagatc
     1081 ggcgccctca ttcacgtcct ggcgcagcaa tgcctccatg gagggggcgc ggcggatcgc
     1141 ctcgtcgagc agcctgtcgc gccctggcgc ataggcgccg agatcaatga tgtcctgctt
     1201 ctcggcccgc ctcgtccata gtgcgcggaa atgcgcggca tgctgcaaat gttcagtcgg
     1261 caccagcatc ggcatggggc gggagagcga ggcggtgatg tcgatgggcg ggtagatggc
     1321 ggactcggtg agggcgcggg acagcacgat atgcccatcc agcactgagc gcgccgtgtc
     1381 cgccaccggg tcgccgacat ggtcgtcccc ctctaccagc acggtataga gggcggtaat
     1441 cgacccttgc gcggcatcgc cattgccggc gcgctccaca taggcagcga gcgcgccgaa
     1501 tacggacggc ggatagcctc tggtggcggg cggctcaccg gcggcgagac cgatttcgcg
     1561 taagcccatg gcgaggcggg tgaggctgtc caccaccagc agcacatgct tgccttcgct
     1621 gcggaaaaat tccgcgatgg ccgcggcacg gtaggcgcca tgcacgcggc ccagcgcggt
     1681 atcgtccgcc ggcgaggcga tgaccacgct gcgcggccgc gccgggccga tatggtcctc
     1741 gatgaattcg cgaatttcac gcccgcgctc gccaatcatg ccgaccacca ccacatcggc
     1801 ccgcgcatgc cgggccatca tgccgagcaa agtggtcttg ccgacgccgg agccggcgaa
     1861 caacccgacc cgcatgccgc gccccagcgt cgcgagtgcg ttgatggcac gtatgccggt
     1921 atcgaacggg tgctcgatgc gcagccgcgc catcggattg atgggcacgc ccatcagcgg
     1981 ccagggatgg gtgacatcgg gcggcggcat ggcgtccagc ggctggccgc gcgcatcgag
     2041 cacgcggccc agcagcgcca tgcccatcag gggcgccggg ctgctgctct ccacatgcac
     2101 ccgcgccccg cgcgtgacac cgcgcgtgcc ctgctcgggc atcaccagca gcgccccggc
     2161 ctcgaacccg accacttccg ccggcagggc cgagccatgt tccatttcga tgaggcagcg
     2221 cgctcccacc ggcgcgcgta tgcccgaggc atgcagcacc tcgccattgg aacgcacgat
     2281 gcgcccatag cgccgcaccg gatcggattt cagtgccgct tgtacgcgct cccgcgccaa
     2341 ggcgcgtata tgctcggccg agatcatggc gtctcccctg tgccgcctgg caggccgagt
     2401 gctgtgcgga tggtggcgag ccgtccctgc agcgtggcgt cccattccac cttgtccacc
     2461 gggtcgccat cctgcgtgat tatttccacc accgccccgc ccggcgtgat tttttcatct
     2521 gccaccaatt gcgcagtgtc cgccgagacg cggtcct
//
LOCUS       DASQCV010000475         1585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1100537, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000475 DASQCV010000000
VERSION     DASQCV010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1100537"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..119)
                     /locus_tag="VEQ16_07220"
     CDS             complement(<1..119)
                     /locus_tag="VEQ16_07220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009539426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6489 family protein"
                     /protein_id="HYP63661.1"
                     /translation="MKVNVEIDCTPLEARQFFGLPDVQPMQTAVMEKLQNQMM"
     gene            complement(234..1475)
                     /locus_tag="VEQ16_07225"
     CDS             complement(234..1475)
                     /locus_tag="VEQ16_07225"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007436456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP63662.1"
                     /translation="MAELKADVLVLGAGMVGVAAALHLQQRGRDVILVDKNEAAGEET
                     SFGNAGLIECASVFPYMFPRDVGELVQYAFNRSPQAHYRVSDLPYFLPWLVRYFLASS
                     PDRALHSALAELPLIQRSLIEHEALVAEAGVAELLRRTGWLKLFRSERSFANGVKEAE
                     RASQFGVPSEVLKPSAIAAREPHLKGDFAGAIYLPTPGFVPDPGALAKAYTALFKRKG
                     GRFLVSDATTLEQHPKGWRVRGVTARETVVALGPWSDLVFRPLGYSIPLGVKRGYHLH
                     LAPRGNAVLHEPILDSDLGFVLAPMNRGIRLTTGVEFARRDGPPTPVQVQQALPRARA
                     LFPLGEAIDAKPWMGARPCLPDMLPVIGKAPRHAGLWFDFGHQHHGLTLGPVTGRLLA
                     EMMTGQAPFADPRPFAADRFG"
BASE COUNT          320 a          513 c          484 g          268 t
ORIGIN      
        1 tccatcatct ggttctggag tttttccatg accgcagtct gcatcggctg cacgtctgga
       61 agcccgaaga actgccgggc ctcgagcggc gtgcaatcta tttcaacgtt aaccttcatg
      121 tgcactcctg cgagcgttcg ccccatcgga cagtatcgcc gccagaggcc tgcagtagca
      181 agccggcttt aggcggcccg acggctcccc aggcgctaaa tcagcgcata tggtcaacca
      241 aagcgatctg cggcaaacgg cctcggatcg gcgaaaggcg cctgccccgt catcatttcc
      301 gccagcaacc gcccggttac gggacccagc gtcaggccgt ggtgctggtg cccgaaatcg
      361 aaccacagcc cggcatggcg aggcgccttg ccaatgacgg gcagcatatc gggcaggcag
      421 ggccgcgcgc ccatccaggg ttttgcgtcg attgcctcgc ccagcgggaa cagggcgcgc
      481 gcccgtggca gcgcctgttg gacctggact ggcgttggcg gcccatcgcg gcgggcaaac
      541 tcgacgccgg tcgtgaggcg gatgccgcgg ttcatcggcg cgagcacaaa gccgagatcg
      601 gaatcgagaa tcggctcgtg aagcacagca ttgccgcgcg gcgcaagatg cagatgatag
      661 ccgcgcttga cgccgagcgg tatggaatat ccaagcggac ggaacaccag gtccgaccac
      721 ggtccgagcg ccacgacggt ctcacgcgcg gtcacccctc gcacgcgcca tccttttggg
      781 tgctgctcga gagttgtcgc atcgctgacc agaaagcgtc cgcccttgcg tttgaacaac
      841 gcggtgtagg ccttggccaa tgcgcctgga tcgggaacaa atcccggcgt cggcaaatag
      901 atcgcgccag caaaatcgcc cttcagatga ggctctctcg ctgcaatcgc ggaaggcttc
      961 agaacctcgc tgggaacgcc aaattggctt gcgcgctcgg cctctttgac gccattggca
     1021 aagctccttt cggatcgaaa cagtttcagc cagccggtgc ggcgcaacag ttctgcaacc
     1081 ccggcttccg caaccagggc ctcatgctcg atcaggctgc gctggatcaa gggcagttca
     1141 gcgagagcgc tgtgaagcgc gcgatccggc gaagacgcaa gaaagtagcg caccagccac
     1201 ggcaggaagt acggcagatc ggaaacccga taatgtgcct gcggcgagcg attgaacgcg
     1261 tattgaacga gctcgccgac atcgcgcggg aacatgtagg ggaaaaccga agcgcattcg
     1321 atcaggccgg catttccgaa actggtctcc tccccggcag cctcgttttt atcgaccagg
     1381 atgacgtcgc gcccccgctg ctgcaggtgc aaggcggcgg ctacgccgac catgcccgct
     1441 cccagcacaa gaacatcggc cttcagttcc gccatccggc actcccgtcc atgccgcccg
     1501 tgctgtagct agtcatggcg gaggcacggc gcaaacgact atgctttaag ggaaatcgcg
     1561 cttgcgccac ggccaaactc tggca
//
LOCUS       DASQCV010000476         2385 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_268608, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000476 DASQCV010000000
VERSION     DASQCV010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268608"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..730
                     /locus_tag="VEQ16_07230"
     CDS             <1..730
                     /locus_tag="VEQ16_07230"
                     /inference="COORDINATES: protein motif:HMM:NF012669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HYP63663.1"
                     /translation="VRQAGSISISALAARLEVSTESIRRDIKELVDTGAVRRFHGGIA
                     DPAFEEEPPFERRMRVNREAKRHVAALAAGLIRDGDSIILDNGTTTAYIAEALAARSK
                     LMVVTNAAQIACRLAGRNGNRVFLAGGEMSGDDAAAFGQSAMDFLRQFRVDYALLSAG
                     GIGPQGEIRVFHLYEAEFARIVMGQARESWVVADASKFGRAAPVEVCPLAAINRIITD
                     TPPEAALRGACAEADVDIVTNIAT"
     gene            779..1141
                     /locus_tag="VEQ16_07235"
     CDS             779..1141
                     /locus_tag="VEQ16_07235"
                     /inference="COORDINATES: protein motif:HMM:NF016149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopC"
                     /protein_id="HYP63664.1"
                     /translation="MKLRLAICAFAALAAASPAFAHAYLQSSTPSAGSVLHAAPKTLL
                     IIFTEDIEVPFSGVTVTDAMGMNDVAGKPQAVPGHANQLLVPLNIQMPGKITVTWHAL
                     STDTHKTHGVFTFTVGGG"
     gene            1282..2310
                     /locus_tag="VEQ16_07240"
     CDS             1282..2310
                     /locus_tag="VEQ16_07240"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYP63665.1"
                     /translation="MVFEAFLVGGCKSYLVGCETTREAVLIDPELSLLNNYRVVAGQL
                     GLHIRYVIDTHTHADHFSASRELRKVMAALVVTHRLSPAPFVDLRLDDGDMLIVGNLR
                     LKAIHTPGHTQDSMCLVMDDRVFTGDALLIGGTGRTDLPTGSPHALYESLFEKILKLP
                     PAMLVFPAHDYKGRDHSTIGAEIAENPRLQKTERTAFVEMMETLNLAAPTHLTEALRT
                     NMSGGKSVAQLLSEASANVPFMSLLELSERIGGNSRDLIVLDLRESEAFHGGHIPGAK
                     HLPRGQLELRVNTELPDPTLRIVTCCEFGKISTLAAATLRELGYARVAALDGGMKAWR
                     EAGYAIVQ"
BASE COUNT          464 a          730 c          759 g          432 t
ORIGIN      
        1 ggtgcgccag gcgggcagca tcagcatctc ggccctggcc gcaaggctgg aggtctccac
       61 cgaaagcatc cggcgcgata tcaaagagtt ggtggacacc ggcgcggtgc ggcgcttcca
      121 tggcggcatc gccgacccgg ccttcgaaga ggaaccgccc ttcgagcggc gtatgcgggt
      181 caaccgcgag gccaagcgcc atgtggcagc cctcgcggcg gggctcatcc gggatgggga
      241 cagtatcatt ctcgataacg gcaccaccac cgcctacatc gccgaggcgc tggcggcgcg
      301 ctccaagctg atggtggtca ccaacgccgc gcagatcgcc tgccgcctcg ccgggcgcaa
      361 cggcaaccgc gtattcctgg ccggcgggga aatgtccggc gacgatgccg ccgcgttcgg
      421 ccagagcgcg atggatttcc tgcgccagtt ccgggtggat tacgcgctgc tctcggccgg
      481 cggcatcggg ccgcaggggg agatccgcgt gtttcatctg tacgaggcgg aattcgcccg
      541 catcgtcatg ggccaggcgc gggagagctg ggtggtggcg gatgccagca aattcggccg
      601 cgccgcgccg gtggaggtgt gccctctggc ggccatcaac cgcatcatca ccgatacgcc
      661 gcccgaggcc gccctgcgcg gcgcttgcgc cgaggcggat gtggacatcg tcacgaacat
      721 tgccacatga tatagttggt gctacggccg tggccattca ccattagagc caaacaagat
      781 gaagctccgt ctcgccatat gcgccttcgc cgccctcgcc gccgccagcc cggctttcgc
      841 ccatgcctat ctgcaaagct cgacgccctc cgccggcagc gtgctgcatg cagcaccaaa
      901 gacgctgctc atcattttca ccgaggatat cgaagtgccg ttctccggcg tgacggtgac
      961 ggacgcgatg ggcatgaacg atgtcgccgg caagccgcaa gcggtgccgg ggcacgccaa
     1021 ccagctgctc gtgccgctga acatccagat gccggggaag atcaccgtca cctggcacgc
     1081 gctttcaacg gacacgcata aaacgcacgg cgtgtttacg ttcactgttg gtgggggttg
     1141 agggctgggg gcgaacgccg agcaagagat gttggaatgg aggggggctc ggccgtatag
     1201 ccgacgctgg tgcaagaaaa ttgtccaggc cgataagtcc tgttattcca gccataaggc
     1261 aggcgatcct ggagctgtaa aatggtcttc gaagctttcc tggttggcgg ctgcaagtcc
     1321 tatcttgtag ggtgcgagac gacccgcgag gcggtgctca tcgatccgga gttgagcctg
     1381 ctcaataatt atcgcgtggt agctgggcag ttgggactgc atatccgtta cgtcattgat
     1441 acacatactc acgccgatca cttctcggcc agccgggaac ttcgcaaggt catggccgct
     1501 ctggtcgtca cacatcgcct gagcccagca cctttcgtcg atctgcggct tgacgacgga
     1561 gacatgctga ttgtgggtaa tcttagactg aaggcgatcc acacgccggg tcacacacag
     1621 gattcgatgt gcctggtgat ggacgaccgg gtttttactg gtgatgcatt gctcatcggc
     1681 ggcacgggcc gcaccgatct tccaaccggc agtccccatg ctctctatga gagcctgttc
     1741 gagaaaatct tgaagctgcc gccggcaatg ctggtcttcc cagcgcacga ctacaagggg
     1801 cgagaccatt caacgatcgg cgccgagata gccgaaaatc cacgtttgca gaagaccgag
     1861 cgcacagcct tcgtcgagat gatggagacg ctgaacctgg ccgcgccgac ccatctaacg
     1921 gaagcgctgc gcacgaatat gagcggcggc aagtcggtag cccagcttct gtctgaagct
     1981 tccgccaacg tgccattcat gtcacttctg gaattatcag agcggatcgg cggcaatagc
     2041 cgggacctga tcgtgctgga ccttcgcgag agcgaagcat ttcacggcgg ccacataccg
     2101 ggcgccaaac acttgccgcg cgggcagttg gagctgcggg tcaacaccga gctgccagac
     2161 ccgaccctgc gcatcgtcac ctgctgcgaa ttcggcaaaa tatcaacgct ggccgccgcc
     2221 actctgcgcg agctgggcta tgcgcgggtg gcggcactcg atggcggaat gaaggcatgg
     2281 cgcgaggccg gctacgccat agtgcaatag caccagaaac ggcaagatgg ttggcgtcac
     2341 gttgagtcca ctgccgggca gaggtaattg attgcctaag cttgg
//
LOCUS       DASQCV010000477         2022 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2260556, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000477 DASQCV010000000
VERSION     DASQCV010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2260556"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1121)
                     /locus_tag="VEQ16_07245"
     CDS             complement(<1..1121)
                     /locus_tag="VEQ16_07245"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HYP63666.1"
                     /translation="MNSEDAAYAPAEALFPPQAERDRLTSLLAAELAAAQASMHEGRV
                     APDSDPKRLAAELSCFNFAAPTELAELLPWVVQHMRDGIVQMTHPRYFGLFNPAPGFP
                     SILADHISAVFNPQLAAAKTSPAAVAIEAHVIAQVAQRAGLPPGSGGHFTNSGSEANF
                     TALTCALTKICPFYGETGAHAFRTPPAIYVSREAHQAWFKIAHQAGIGRLAIRLIETD
                     GQGRMSALALAKAVRADIVNGAVPVMIVATAGTTVAGMIDPLRACANIAESNGIWFHV
                     DAAWGGAAITSNQLRPLLSGIELADSVTIDAHKWLATTMGCGMFLIAQPWILNEAFDV
                     SASFMPAGQHAPDPYTSSMLWSRRFLGLRLFLNLAAAGWA"
     gene            complement(1118..>2022)
                     /locus_tag="VEQ16_07250"
     CDS             complement(1118..>2022)
                     /locus_tag="VEQ16_07250"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: protein motif:HMM:NF016120.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HYP63667.1"
                     /translation="MSPSAMSSTKAQFARLLAATGYPVELVCFTMHTPQDELCGHLPI
                     AAFPDHGIDAIIVTGMEVTTSDLRDEWVWRGFTRLHDWCEQESIPAIWSCLAAHAAVL
                     HRDGIPRQRIGAKLTGLFGCQRAGMPHRLTQDLPPRWNCPHSRYNGLSRGMLIAHGYS
                     ILSEGEAVGVDIFTHADQPASFYFQGHPEYQPSTLLQEFLRDLRRCVAGEMPVCPSVP
                     AYYLDAGTEQALSALRVQALAGQDVLQAARDVAQHAVFLRDWAGPAVRLYANWLDIVA
                     DHALRRPAWPLALETAPPPGAAAS"
BASE COUNT          372 a          609 c          717 g          324 t
ORIGIN      
        1 gcccagccag ccgcggcgag gttgaggaac aggcgcaggc cgagaaaacg gcgcgaccag
       61 agcatcgatg aggtatacgg gtccggcgcg tgttgcccgg cgggcatgaa ggaggcggag
      121 acatcgaacg cctcattcag gatccagggc tgagcgatga ggaacatgcc gcagcccatg
      181 gtggtggcca gccatttatg cgcgtcgatc gtcacggaat ccgcgagctc gatgcctgag
      241 agcaaaggcc gtaactggtt ggaggtgatg gccgccccgc cccaggcggc atcgacatga
      301 aaccatatgc cgttgctttc ggcgatgttg gcgcaggccc gcagcgggtc gatcatgccg
      361 gcgacggtgg tgccggcggt tgcgacgatc atcaccggca ccgcgccatt gacgatgtcg
      421 gcgcgcacgg ccttggccag cgccagggcg ctcatcctgc cctggccatc ggtttcgatg
      481 agccgtatgg ccaggcggcc gatgcccgcc tgatgcgcga tcttgaacca ggcctggtgc
      541 gcctcgcgcg agacatagat ggccggcggg gtacggaaag cgtgcgcgcc cgtttcgccg
      601 tagaatgggc agattttcgt cagcgcgcag gtcagtgcgg taaaattcgc ctccgagccg
      661 ctattggtga aatggccgcc acttcccggc ggcagccccg cgcgttgcgc cacttgggcg
      721 atgacatggg cctcgattgc aacggcagcc ggagaggtct tggcggcagc gagctgcggg
      781 ttgaagacgg ctgaaatatg gtccgcgagg atggagggaa agccgggtgc gggattgaat
      841 aggccgaaat aacgcggatg cgtcatttgc acgatgccgt cgcgcatgtg ctgcacgacc
      901 caggggagca gctcggccag ttcggtgggt gctgcgaagt tgaaacagga taattcggcg
      961 gcgaggcgct tagggtcgga atccggcgcc acacgccctt catgcatgct ggcctgggca
     1021 gcggcgagtt cggcggccag caatgacgtc agcctgtcgc gctcagcctg cggcggaaac
     1081 aatgcctcgg ctggcgcata ggcggcgtcc tcgctgttca tgacgccgcc gcgccaggcg
     1141 ggggcgctgt ctccagcgcc aatggccaag ccggccggcg caacgcatgg tccgccacga
     1201 tgtcgagcca gttggcatag aggcggaccg ccgggccggc ccagtcgcgc aaaaagacgg
     1261 catgctgcgc gacatcacgg gcggcttgca gcacatcctg ccctgccagc gcctgcacac
     1321 gcagggctga cagggcctgc tccgtcccgg catcaagata atatgcgggc acggacggac
     1381 agacgggcat ctcgcctgcc acgcagcggc gcagatcgcg gagaaattcc tgaagcagcg
     1441 tgctgggttg atattccgga tggccctgga aatagaagct cgcgggctgg tctgcgtgtg
     1501 taaaaatatc gacgcccacc gcctcacctt cggagaggat gctgtagccg tgcgcaatga
     1561 gcatcccgcg cgacaggccg ttatagcgtg aatgcgggca gttccagcgc ggcggcaggt
     1621 cttgcgtcag gcggtggggc atgccggcgc gttggcaacc gaacaggcct gtgagcttcg
     1681 cgccgatgcg ctggcgggga atgccgtcgc ggtgcagcac cgcggcatgg gcggcaaggc
     1741 aggaccagat ggcggggatc gattcctgct cgcaccaatc atgcaggcgg gtgaagccgc
     1801 gccacaccca ctcgtcgcgc aaatcgcttg tcgtcacctc catgccggtg acgataatgg
     1861 cgtcgatgcc gtggtccggg aacgcggcga tgggaagatg gccgcacagc tcgtcctgcg
     1921 gcgtgtgcat cgtgaagcag accagttcaa cgggataccc cgtcgccgcg agcagccggg
     1981 caaattgcgc tttggtcgag gacatcgccg aggggctcat at
//
LOCUS       DASQCV010000478         2772 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1928401, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000478 DASQCV010000000
VERSION     DASQCV010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2772
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1928401"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..264)
                     /locus_tag="VEQ16_07255"
     CDS             complement(<1..264)
                     /locus_tag="VEQ16_07255"
                     /inference="COORDINATES: protein motif:HMM:NF024923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HYP63668.1"
                     /translation="MKHLRLAVLSVAALAVAAGVSYVAPKSAPEYITAPVERGSISSF
                     VLATGSVQPIVSVDVSSQLSGRVAEVFVDFNDAVKAGQPLARLD"
     gene            complement(328..639)
                     /locus_tag="VEQ16_07260"
     CDS             complement(328..639)
                     /locus_tag="VEQ16_07260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63669.1"
                     /translation="MKQKMEIFTGAACLLLFSAGLAFATDPHSTANPTGQPSQSCQAT
                     NPPNFPGGSGSSPGSAFNGKAGTEYAGTPGTPSALNNNSPNGVAAQYDVACFQQTQRI
                     P"
     gene            1067..1627
                     /locus_tag="VEQ16_07265"
     CDS             1067..1627
                     /locus_tag="VEQ16_07265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63670.1"
                     /translation="MKLGLIVSLVCLAVDTCQVAPPPTTGYLPPDAFEATAQGQDPAL
                     AAVQEAMYAFAYPGRMQGRPAEMALAVASLDAMAGQFSTSGRWYGMSWIPQQEMLDAR
                     TEVRGILGIPDSAPSQLVIDQLMAASRALNNDDQKAALAALSGPAFTKPPEQTLSILA
                     HFPPAPIANQATMAASMNFFPPDEPW"
     gene            1711..1899
                     /locus_tag="VEQ16_07270"
     CDS             1711..1899
                     /locus_tag="VEQ16_07270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3311 domain-containing protein"
                     /protein_id="HYP63671.1"
                     /translation="MIRVLLLVIFVAALAVPFYNRAEPSLFGFPFFYWYQLAVVLSAS
                     LLTWIVYLVEHAGKAGEE"
     gene            1899..>2772
                     /locus_tag="VEQ16_07275"
     CDS             1899..>2772
                     /locus_tag="VEQ16_07275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HYP63672.1"
                     /translation="MPYPTAAIVFLLLVASVLMLGFFAGRWKAGNLAHIEEWGLGGRR
                     FGTWVSWFLIGGDAYTAYTFIAIPALMFGAGAMGFFAVPYTVLIYPILYVVFPKLWRV
                     AKKHGYITAPEFVRGRYGNRWLALAIGLTGIAATMPYIALQLVGMQTIIAALGLPGAH
                     VPLIIAFAVLAGFTWTAGLRAPAMIAIVKDLLIYLTVIAVIVVVPVELGGFGAIFAKI
                     DPAKLLLATPKPGSGGAYTGYATLAMGSAMALFLYPHTMTGILSAAGPRVIKRNAVLL
                     PAYSLLLGLLALIGF"
BASE COUNT          481 a          870 c          839 g          582 t
ORIGIN      
        1 gtcaagacgc gcaagaggtt gccccgcctt gaccgcgtca ttgaaatcaa caaaaacctc
       61 cgccacgcgc ccggagagtt gtgagctgac gtcaacggaa acgatcggtt ggacgctgcc
      121 agtcgccagc acgaaactgg aaatgctgcc acgttcgacg ggagccgtga tatattcggg
      181 ggccgatttt ggggcgacgt acgacacacc ggccgccaca gccagtgccg cgaccgacag
      241 aactgccaat cgcaaatgct tcatccgccc ccccttgcga ggctactcct tggcgccggc
      301 aatgtcagaa acgtcaacga gtgttattca aggtattctc tgggtttgtt ggaagcaagc
      361 gacatcatac tgagcggcaa cgccattggg actgttattg tttaatgcag acggtgtacc
      421 aggggtaccg gcatattctg tacctgcctt gccgttgaag gcggatcctg gcgaggagcc
      481 gctaccgccc gggaagttgg gagggttagt ggcctggcat gattggctgg gctgtcccgt
      541 tggattggcc gtgctatgcg gatctgtcgc aaaagcaagc ccagctgaaa aaagcagcaa
      601 gcaagcagcg cccgtgaaga tctccatctt ctgtttcata gttcatctcc ttctgatatt
      661 gtattcattt tggacctacc ggaggaccaa cgttctatgg tcgactatga cgcaatgccg
      721 caaaatcaca aaaactctgc ggccctggca taaagcgcgc gtaatatacc acaagaaagg
      781 ctggactttc cattttccat caaattaaat tgttgcggtc tactggttga tgtagccaga
      841 attgggtggc gctgaacgtc cgctcctgag gtcaacttcc gggtcggcct acgaccggct
      901 tgggtcgaaa ccgggaatac caaccgcccc acgcccccga tgtgctcagc ggcccgaatg
      961 gtgtattcac ggcgtgcaaa tctgttgggc aacgcgggga gggccggttg cgcttcccgg
     1021 ctgccgctcc ttgtgcgttt ctctttccgc ggacaaagga aaaacgatga agcttggtct
     1081 cattgtctcc ctggtctgcc ttgccgtgga cacttgccag gtggcgccgc cgcccaccac
     1141 cggctatctg ccgcccgacg ccttcgaggc gaccgcgcag gggcaggacc ccgccctggc
     1201 ggcagtgcag gaggcgatgt acgccttcgc ttatccgggg cggatgcagg ggcggccggc
     1261 ggaaatggcg ctggccgtgg cgtcgctgga cgccatggcg gggcagtttt ccaccagcgg
     1321 gcgctggtac ggcatgtcct ggatcccgca gcaggaaatg ctggatgcgc ggaccgaggt
     1381 gcgcggcatc ctcggcatac cggacagcgc gccgtcgcaa ttggtgatcg accagctgat
     1441 ggcggcatcc cgcgccttga acaacgacga ccagaaagcg gccctggcgg ccttgtccgg
     1501 ccccgccttc accaagccgc ctgagcagac attgtcgatt ctggcgcatt tcccgcccgc
     1561 gcctatcgcg aatcaggcga cgatggcggc gagcatgaat tttttcccgc cagacgagcc
     1621 ctggtagcgc caccgcctgt cttgccgcgc gggcttgcca aaacacccgc cctgttccat
     1681 ctctgcgggt gaaataaagg gaggagcaaa atgatccggg tcctgctgtt ggttattttc
     1741 gtggcggcct tggccgtgcc gttctacaac cgggccgagc ccagcctgtt cggcttcccc
     1801 ttcttctact ggtatcagct cgcggtggtg ctctcggcct cgctgctcac ctggatcgtc
     1861 tatctcgtgg aacatgccgg caaggcggga gaggaataat gccctacccc accgccgcga
     1921 tcgtttttct gctgctcgtc gcctccgtgc tcatgctcgg cttcttcgcc gggcgctgga
     1981 aggcgggcaa tctcgcccat atcgaggaat ggggcctggg cggaaggcgc ttcggcacct
     2041 gggtgtcctg gttcctcatc ggcggtgatg cctataccgc ctataccttc atcgccattc
     2101 cggcgctgat gttcggggcc ggcgccatgg gcttcttcgc cgtgccctat acggtgctca
     2161 tctaccccat tctctatgtg gtgttcccca agctttggcg cgtggccaag aagcatggtt
     2221 atatcaccgc gccggaattc gtgcgcgggc gctatggcaa tcgctggctg gcgctcgcca
     2281 tcggcctcac cggcatcgcc gcgaccatgc cttatatcgc gctgcaactg gtcggtatgc
     2341 agaccatcat cgccgcgctc ggcctgccgg gggcgcatgt gccgctgatc atcgccttcg
     2401 ccgtgctggc gggcttcacc tggacggcgg gcctgcgcgc cccggccatg atcgcgattg
     2461 tgaaagacct gctgatctat ctcacggtca tcgccgtcat cgtcgtcgtg ccggtggagc
     2521 tgggcgggtt tggcgccatc tttgccaaga tcgaccccgc caaattgctg ctggccacac
     2581 ccaagcccgg ctcgggcggc gcctataccg gctatgcgac gctggcgatg ggcagtgcga
     2641 tggcactgtt cctgtacccg cataccatga cgggcatcct ctccgccgcg gggccgcgtg
     2701 tgatcaagcg caatgccgtg ctgctgccgg cctattcgct gctgctcggc ctgctggcgc
     2761 tcatcggctt ca
//
LOCUS       DASQCV010000479         2257 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3090198, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000479 DASQCV010000000
VERSION     DASQCV010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3090198"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(231..407)
                     /locus_tag="VEQ16_07280"
     CDS             complement(231..407)
                     /locus_tag="VEQ16_07280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63673.1"
                     /translation="MSRLRRLGALVLALLRELSDENAYKRHLAAHGRAHSAQEWRHFS
                     KHRLEAKYARAKCC"
     gene            complement(404..>2257)
                     /locus_tag="VEQ16_07285"
     CDS             complement(404..>2257)
                     /locus_tag="VEQ16_07285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012565802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HYP63674.1"
                     /translation="ATPAERLRDGLDYEPTNKWILFGHHFAAIAGPGPLVGPVLAAQF
                     GYLPGTLWIIIGAVLGGAVQDFVILFASMRRDGKSLGQIAREEVGTVGGFTALVTVLL
                     IMIILLAVIALVVVNALRGSPWGTFTIAATMPIALWMGIYLRYIRPGKVLECSVMGFA
                     LVVLSIFGGQWVAESSTWGPLFSFGAMGLAVAVIIYGYCASVLPVWLFLAPRDYLSTF
                     IKLGVVLALGVGILFVRPELQLPAFTRFVDGTGPIFAGKIFPFCFITIACGAVSGFHS
                     LISSGTTPKMIARESHAYPVGYGAMLMESFVAVMAMIAACVLQPGVYFAVNSPAGVVG
                     STPAAAVSTISNWGFPVTVADMTNLAKAVGEQTLFYRTGGAPSLALGMAAIFARGGGG
                     QAVLGFWYHFAIMFEALFILTIIAAGTRVGRFMLHDLMAQFSRPTAKKMTGIVGVNVV
                     SLVVVAAWGYFLVQGVRDPLGGINSLWPLFGISNQLLASVALCVATTIVLKMHGPKFM
                     WITCGPLVWLLSATFTAGWQKIFAPEPALGFLAHANQLEQAMRRSPSATTAALIFNDR
                     LDAVVTGIFLILVATILVDSLRTWMGILRGTRESRIFEAPFVPSRLQPEEL"
BASE COUNT          486 a          769 c          670 g          332 t
ORIGIN      
        1 gatcggctgc tttcacgagc cgaagaattg tacgaagcgg tccgtgggca tcaatcgcgg
       61 ggtgcgccct caccagtccc cccggtcctt tctggcgcat gactcgggat caccgcgctc
      121 ggccgtgggc gcggcgccgc gaacggctac caacgaccgt gaccatcgca tcatgtttct
      181 agtgatcagc tccggcctgt tcctcttgtt ccttggccgc cagggaagcc tcagcaacac
      241 ttggcgcgcg cgtacttagc ctcaaggcgg tgtttggaaa aatgacgcca ctcctgggcc
      301 gagtgcgcgc gcccatgcgc cgccaggtgc ctcttgtacg cgttttcgtc cgacagctcc
      361 cgcagcagcg ccagcaccag cgcgcccaac cgccgcaggc ggctcatagt tcctccggct
      421 gcaaccggga ggggacgaag ggcgcttcaa agatgcgcga ttcgcgggtt ccgcgcagga
      481 tacccatcca ggtgcggagc gaatccacca gaatggtcgc caccagaatg agaaagatgc
      541 cggtcaccac ggcatccagg cggtcgttaa agatcaaggc cgcggtcgtt gccgaggggc
      601 tccggcgcat tgcctgttcg agctggttgg cgtgcgccaa aaagcccaag gcgggctccg
      661 gcgcgaagat cttttgccac ccggcggtga acgtcgcgct cagcagccag accagcggcc
      721 cgcaggtgat ccacatgaat ttgggcccgt gcatcttcag cacgatggtg gtggccacgc
      781 acagcgccac cgaggcgagc aactgattcg aaatcccgaa cagcggccac agcgagttga
      841 taccgcccag cggatccctc acgccttgca ccagaaaata accccacgcc gccaccacca
      901 ccaggctgac gacgttcacg cccacgatcc cagtcatttt cttcgccgtc gggcgcgaga
      961 actgcgccat caggtcgtgc agcataaagc ggcccacacg cgttcccgcc gcgatgatgg
     1021 tgaggatgaa cagcgcctcg aacatgatgg cgaagtgata ccagaagccg aggaccgcct
     1081 gccctccgcc gccacgcgcg aatatcgccg ccatccccag cgccagcgaa ggcgcgccgc
     1141 cggtgcgata aaacaaggtt tgttcgccga cagccttggc caggttcgtc atgtcggcca
     1201 cggtcacagg aaagccccaa ttcgagatgg tggacacggc agccgccggt gttgagccca
     1261 ccacgccggc cggcgaattg actgcgaagt acacaccggg ctgcagcacg caagctgcaa
     1321 tcatcgccat aacagcgacg aaactctcca tgagcatcgc accgtatccc accggatagg
     1381 cgtgcgactc ccgagcaatc atcttaggcg tcgtgcccga agagatcagc gaatggaaac
     1441 cggagaccgc cccgcaggca atggtgatga agcagaacgg gaaaatcttt ccggcgaaga
     1501 tcggcccggt gccatccacg aaacgcgtga aggcgggaag ctggagctcc ggcctcacaa
     1561 agaggatgcc gaccccaagc gccaacacca ctcccagctt gatgaaggtg ctcaggtaat
     1621 cgcgcggcgc gagaaacagc cacaccggca ggacgctcgc gcaatagccg tagatgatca
     1681 ccgccacggc aagccccatc gctccgaacg agaaaagcgg gccccaagtg ctcgattccg
     1741 caacccactg gcccccgaag atgctcaaga ccaccagcgc gaaccccatc acggagcact
     1801 ccagcacctt gccgggccgg atatagcgca ggtaaatgcc catccacagg gcaatcggca
     1861 tggtggccgc gatggtaaag gttccccacg ggctgccccg cagcgcgttg accaccacca
     1921 gagcgatcac ggccagcagg atgatcatga tcagcagcac cgtgaccaac gccgtaaagc
     1981 cgccgaccgt gccgacctcc tcgcgcgcga tctggccgag cgatttgcca tcgcggcgca
     2041 tggacgcaaa caggatcacg aagtcctgca cggcccctcc cagtacggcg ccgatgatga
     2101 tccatagcgt ccccggaaga tatccaaact gcgcggccaa caccggcccc accagcgggc
     2161 ccggcccggc gatggcggcg aagtgatggc cgaacaggat ccacttgttg gttggctcgt
     2221 aatccaggcc atcgcgcaga cgctcggcgg gtgtggc
//
LOCUS       DASQCV010000480         2557 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_436642, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000480 DASQCV010000000
VERSION     DASQCV010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2557
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436642"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..669
                     /locus_tag="VEQ16_07290"
     CDS             <1..669
                     /locus_tag="VEQ16_07290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HYP63675.1"
                     /translation="IFLLSHPLADYPALLYLTEYFGSFVIWYLFTRFIFNMFKNRRNT
                     KLVEQFPDALSTVVRCVRVGIPMGEALRTVSRDSLEPTKLEFTILADKVSIGVPLDAA
                     LRELAVRVKLTEYQFFATALTLQARSGGGITQTLEGLSDVIRKRVALKARGFALTAEA
                     RTSAMVLSVLPFVAGGMIFMVQPNYIMTLFTTKGGESVITGAIVLLILGMGTIQFMIS
                     NVLK"
     gene            656..1621
                     /locus_tag="VEQ16_07295"
     CDS             656..1621
                     /locus_tag="VEQ16_07295"
                     /inference="COORDINATES: protein motif:HMM:NF012694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HYP63676.1"
                     /translation="MSLSNISSGTIYELLFLILICFGLLTVAGFVLAIDLGKSARLER
                     RIGLITGETMEEVEEEAKPQEALALRLISGFGLFIARSGLLNRKTLAEMQATLEGIGF
                     KGGRGLGLFIGSKILLLLVTPILAFFIAQRMQLSHFWTMVAVAGGTVGAILAPETYAT
                     NTRTKFLEKVESGVPDALDMLVICADAGLALEAGIARVSQEMETLNPQLAQELTQTSR
                     EMQIGADLRTAMDALGERTGLEVLKRLATTLAQSLQYGTPLTTALRTLSAELRQEALV
                     KFEERAGQLPTMMTIPMIVFILPCVFLVVAGPAIINVMATLKGTK"
     gene            1695..>2557
                     /locus_tag="VEQ16_07300"
     CDS             1695..>2557
                     /locus_tag="VEQ16_07300"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP63677.1"
                     /translation="MALALSLALAGCASQNNGGNNAGAIMNAPSGSVGPNTLNVADAA
                     IAGGDPSMALSVSQSILASDPDNVDALVHEGQAYYALNRCPPSEAAFQQALKADPKSA
                     DAEVGLGRCLLKMDPRSAEAAFLAATQDDPGNAAAFSDLGIARDLQNNFAGAAQAYQQ
                     SLNLNAGSTPTAVNLGLSLALSGQGEEALQYLGPIATGPDATPKIREDYAVALVAAGR
                     TDDARQVLAVDMTSDQANAALTGFQNLVAQSIAVPPPPGASAATQPQVQTAPVTESPV
                     TSYAPSTPVMLA"
BASE COUNT          444 a          807 c          773 g          533 t
ORIGIN      
        1 atcttcctgc tctcacaccc gctggcagat tatccggccc tgctttatct caccgaatat
       61 ttcgggtcat ttgtcatctg gtatctgttt acccggttca ttttcaacat gttcaagaac
      121 cggcgcaaca ccaagctggt ggagcagttt ccggatgcgc tgagcacggt ggtgcgctgc
      181 gtgcgcgtcg gtattcccat gggcgaggcg ctgcgcaccg tgtccaggga ttcgctggag
      241 ccgaccaagc tggagttcac catcctggcc gacaaggtct ccataggcgt gccgctcgac
      301 gccgccctgc gtgaactcgc ggtgcgtgta aaattgacgg aatatcaatt cttcgccacg
      361 gcgctcacgc tacaggcccg ctcgggcggt ggcatcacgc agacgctgga aggcctgtcg
      421 gatgtgattc gcaagcgcgt ggcgctgaag gcgcgcggct ttgcgctcac cgccgaggcg
      481 cgcacttcgg ccatggttct atccgtgctg cctttcgttg ccggcggcat gatcttcatg
      541 gtgcagccta attatatcat gacgctgttc accaccaaag gcggcgaatc tgtgatcacc
      601 ggcgccatcg tgctgctgat cctcggcatg ggcaccattc aattcatgat cagcaatgtc
      661 cttaagtaat atttccagcg gcacgattta cgagctgctc ttcctcatcc tgatttgttt
      721 cgggttgctg acggttgcgg gcttcgtgct cgccatcgat ctcggcaaat cggcgcggct
      781 ggaacggcgc atcgggctga tcaccggcga aacgatggag gaggtagagg aggaggccaa
      841 gccgcaggaa gcgctggcgc tgcggctcat ctctggcttt ggcttgttca tcgcccgctc
      901 cggtctgctc aaccgcaaga cgttggcgga aatgcaggcc accctcgagg gcatcggttt
      961 caagggtggg cgcggtctcg gtctgttcat cggctcgaaa atcctgcttt tgctggttac
     1021 ccccatcctc gccttcttca tcgcccagcg catgcagctt tcgcatttct ggacgatggt
     1081 ggccgtggcc ggcggcacgg tgggtgccat ccttgcgcct gaaacctatg ccaccaacac
     1141 gcggacgaaa ttcctcgaga aggtcgagtc cggcgtgccc gacgcgctcg acatgctggt
     1201 gatctgcgcc gacgcgggcc tggccctgga ggctggtatt gcccgcgtca gccaggaaat
     1261 ggagacgctc aatccacaac tcgcccagga gctgacgcag acctcgcgcg agatgcagat
     1321 tggcgccgat ctgcgtaccg cgatggatgc tctgggtgag cgtaccgggc ttgaggtgct
     1381 caagcgtctc gccaccacgc tggcgcaatc attgcaatat ggtacgccgc tgaccacggc
     1441 gctgcgcacg ctctcggccg agctgcgcca ggaggcactg gtcaagttcg aagagcgggc
     1501 ggggcagctg cccactatga tgaccattcc gatgatcgtc ttcatcctgc cctgcgtctt
     1561 ccttgtggtc gcgggcccag ccatcatcaa tgtgatggcg actctgaagg gaactaaata
     1621 gagtgcataa tatgacaagc cagtccttcc acgcccgtct tgccgttgac tcgcgccgtt
     1681 ctggcttgtc tctcatggcg cttgcgctca gcctggcttt ggccggctgt gccagccaaa
     1741 ataatggcgg caataatgcc ggtgccatca tgaatgcgcc gagtggctcg gtcggcccca
     1801 acacactgaa cgtcgccgat gccgccatcg ctggcggcga tccgtcgatg gcgctgtctg
     1861 tttcgcaatc gatcctggcc agtgaccccg ataatgtgga cgcgttggtg catgagggtc
     1921 aggcctatta tgcactcaac cgttgcccgc cctcggaggc cgcattccag caggcgctga
     1981 aggccgatcc caaatccgcc gatgccgaag tcgggctcgg ccgctgcctg ctgaagatgg
     2041 acccaaggag cgccgaagcc gccttcctcg ccgctaccca ggatgatcct ggcaatgctg
     2101 cggccttcag cgatctcggt atcgcgcgcg atctgcagaa taatttcgcc ggtgcggctc
     2161 aggcttatca gcaatcgctc aatctcaacg ccggcagtac gcccacggcc gtcaatcttg
     2221 gcctgtcgct tgcgctttcc ggccagggtg aggaggcgct gcaatatctc ggtcccatcg
     2281 ccaccgggcc ggacgcgacg ccgaagatcc gcgaggatta tgccgtggca ttggtcgcgg
     2341 cggggcgtac ggatgatgcg cggcaggtgc tcgctgtcga catgacatcc gatcaggcga
     2401 atgccgcctt gaccggattc cagaatctcg ttgcgcaatc catcgccgtg ccgcccccgc
     2461 ccggcgcgtc ggccgcgacg cagccccagg tgcagacggc gccggtcacg gaaagcccgg
     2521 tgacatcata tgctcccagc accccggtga tgctggc
//
LOCUS       DASQCV010000481         2106 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2261071, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000481 DASQCV010000000
VERSION     DASQCV010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2106)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2106)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2106
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2261071"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..735)
                     /locus_tag="VEQ16_07305"
     CDS             complement(<1..735)
                     /locus_tag="VEQ16_07305"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HYP63678.1"
                     /translation="MRRAAFLIPLGLGACALGPNYTPPTPPAGSAAPFSAASASTTTA
                     GNAPDEWWRLYDDPVLNGLIEEAFAKNEDLQVAEQNLASSRAIYEGARNLFFPQTVTA
                     MGGTYGRDPVTNEILILGGHKPQTIWKYDAALDVSYELDLFGHVRRSVEAARDSTEAV
                     AAARDELRVTIAAETARAYGQICALGEQINVANEALALAQKQQQIIQQQYDAGAGTQF
                     DIVRAQVVVTQARAALPPLLGEREVAL"
     gene            complement(732..>2106)
                     /locus_tag="VEQ16_07310"
     CDS             complement(732..>2106)
                     /locus_tag="VEQ16_07310"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP63679.1"
                     /translation="TPIAVWMGSIYGPRRILIAAALSFAVTSFVTPFAGNLSGILLMQ
                     FLSGLSSGCFIPLTLSFILRSMPPRLWAYGIAVYALNLELSLNISASLEGWYVDHLSW
                     HWIFWQNVPLALGMAACMHYGSKYLPPQNCIHRDIYGLATCGIGLALIYAALDQGNRL
                     DWLNSGIIWGLILSGLVLLVCFVIHDLTTPYPWLDFRVAVRWPVPLLMLNVAILRLSI
                     LATSYLVPYFLGGVRGYRALQIGDTLAWIAAPQLILCPLAAYMLRRSDARITAAVGLG
                     MVSFACISVAYGLTPLWGEEQFLPSQLMQALGQSFALSGIIFFGILHLRPQDALTFGA
                     MLQITRLFGGEAGSSMVTTVTRIREQRASNLIGLHLQRGAAEVVQRLHEYIQLFLHTG
                     HQPTAAPLLLAEAVRTAATTQATIDGFVVVGACAAFGLMVVTVFLPAPPQGPASHVPL
                     LQRRAVE"
BASE COUNT          442 a          653 c          676 g          335 t
ORIGIN      
        1 caaggccacc tcgcgctcgc ccaacagcgg cggcagcgcc gcccgcgcct gtgtcaccac
       61 cacttgtgcc cgcacaatgt cgaattgcgt gcccgctccc gcatcatatt gctgctgaat
      121 gatctgctgc tgcttctgcg ccagggccag cgcctcgttg gccacattga tctgctcgcc
      181 cagcgcgcag atctgcccat aggcgcgcgc cgtctcggcg gcgatggtca cgcgcaattc
      241 atcgcgcgcc gccgccaccg cctcggtgct gtcgcgcgcc gcctcgacgg agcggcgcac
      301 atggccgaac aaatccagct cgtaagacac gtcgagcgcc gcatcatatt tccagatcgt
      361 ctgcggctta tgcccgccca gtatcaatat ttcgttcgtg accgggtcgc gcccataggt
      421 gccgcccatg gctgtcacgg tttgcggaaa aaacagattg cgcgcgccct cataaatcgc
      481 ccgcgaggag gcgagattct gctccgccac ctgcaaatct tcgtttttcg caaaagcttc
      541 ctcgatgagc ccgttcagca ccgggtcatc gtaaagccgc caccattcat ccggtgcgtt
      601 gcctgctgtc gtggtgctgg cgctggccgc gctgaagggc gcggcagagc ccgcgggcgg
      661 cgtgggcggc gtgtaattgg ggcccagcgc gcaggcaccc agcccgagcg ggattaaaaa
      721 tgccgcccgc ctcattccac cgccctgcgc tggagcaagg gcacatgcga ggccgggcct
      781 tgcggtggtg ccggcagaaa caccgtcacc accatcagcc cgaaggcggc gcaggcgccg
      841 acgacgacga aaccatcgat ggtcgcctgc gtcgttgccg ccgtgcgcac ggcctcggcc
      901 agtagcaagg gcgcggcggt tggctgatgc ccggtatgga ggaagagttg tatatattca
      961 tgcaaacgct gcaccacctc cgccgcgccg cgctgcagat gcaggccgat caggttcgag
     1021 gcgcgctgct cgcgtatcct ggttacggtc gtcaccatcg aggagcccgc ctcgccgccg
     1081 aacaggcgcg tgatctgcag catggcgccg aaggtcagcg catcctgcgg gcgtaaatgc
     1141 agaatgccga aaaaaataat gccggagagc gcgaaactct ggcccagcgc ctgcatcaat
     1201 tgcgaaggca ggaattgctc ctcgccccag agcggcgtca gcccgtaggc cacgcttatg
     1261 caggcaaagc tcaccatgcc aagtccgacc gccgcagtaa ttctggcatc ggaacggcgt
     1321 agcatatagg cggcaagcgg gcagaggatg agctgcgggg cggcgatcca ggccagcgtg
     1381 tcgccgatct gcagcgcgcg gtagccgcgc acgccgccga gaaaataggg aacgagatag
     1441 gaggtggcga gaatggagag acgcaatatg gcgacattga gcatcagcag tggcacgggc
     1501 cagcgcaccg ccacgcgaaa atcgagccag ggataaggcg tcgtcaaatc atggatgacg
     1561 aagcaaacca gcagcaccag cccggacagg atcagccccc agatgattcc ggaattcagc
     1621 caatccagcc tgttgccttg gtcgagtgcg gcatagatca aggcaagccc gatgccgcat
     1681 gtggccaggc cgtaaatatc gcgatggatg cagttttgcg gcggcagata tttcgagccg
     1741 taatgcatgc aggccgccat gccgagcgcc agcggcacat tctgccagaa aatccagtgc
     1801 cagctgagat ggtcgacata ccagccttca agcgaggcgg agatgttgag cgagagttcg
     1861 aggttgagcg catagacagc gatgccatag gcccagagcc ttggtggcat ggagcgcagg
     1921 atgaagctca gcgtaagcgg gatgaaacag ccggagctga ggccggagag aaactgcatg
     1981 aggaggatac cggagagatt cccggcaaag ggcgtgacga aggaggtgac ggcaaaggac
     2041 aaggcagcgg cgatgagaat ccgtcgcggc ccgtagatgc tgcccatcca tacggcgatg
     2101 ggcgtt
//
LOCUS       DASQCV010000482         1652 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1928767, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000482 DASQCV010000000
VERSION     DASQCV010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1928767"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1652
                     /locus_tag="VEQ16_07315"
     CDS             <1..>1652
                     /locus_tag="VEQ16_07315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63680.1"
                     /translation="QDLEEVVRREKQIIASTHNIIGGGAKGKDATADNGRYLSETQRA
                     LQKQAESMAGRTTARELAGLNQEFQSFTKELQEAAGEMNSAADQLKGLKWQDAIQPEE
                     KALQHLNRAVATMRDIQVAFGNGGGGGGGGGASAGRDLANLFDLELDTEKNQYEQAQQ
                     ASTAEQRQKEIDDAMRKLDELARRQQELANNQRNNKQQDINNRWQQEQLRRQAEELQK
                     QLERLQQQQQSQLSRSGQQGQSGQSGQSGQSGQSGQSGQSGQSGRSGQSASAQQLQRQ
                     IDQLKQIQQDMATAQKNAQQGGDPAQAEAAARRAAERLNEMRDSLARGRQQDAAAQLT
                     DLAERANKLDAEQHEIEGRMKQAFGDPYSADPRQRNPQGAPSRQSVEDMAKEKEKMAG
                     ELGEIQKEVQQQARNLAGAQPQASTRLREGLSAIQQNEAQQRMKDAAGWLRNGQGRYI
                     TNREAPVTQALDGLKDSLQRAQQALGGNSQEQARNDTERQLQNIERLRAQLQNYSQGG
                     KNGQQPGNQSGQGNQNGQQNGNGQQPGQGNQGGNQGGQRNGA"
BASE COUNT          415 a          452 c          598 g          187 t
ORIGIN      
        1 tgcaggatct ggaagaagtg gtgcgccgcg agaaacagat catagcctcc acgcacaaca
       61 tcatcggcgg cggcgcgaag gggaaggacg ccactgcgga caacgggcgt tacttgtcgg
      121 agacccagag agcgttgcag aagcaggcgg aatcgatggc gggccgcacg accgcgcgcg
      181 agctggccgg gttgaaccag gagttccagt cgttcaccaa ggagttgcag gaagcggcgg
      241 gcgagatgaa ttcggctgcc gaccaattga aggggctcaa gtggcaagat gcgattcagc
      301 ctgaagaaaa ggcgttgcag cacctgaatc gcgcggtggc caccatgcgc gatattcagg
      361 tggcgttcgg gaatggcggc ggaggcgggg gcgggggcgg cgcgagcgct ggccgcgatc
      421 tggccaatct gttcgacctc gaactggata cggagaagaa ccagtacgaa caggcgcagc
      481 aagcttcgac tgccgagcag cggcagaagg aaatcgacga cgccatgcga aagctggatg
      541 agttggcgcg gcggcagcag gaactggcca acaatcagcg caacaacaaa caacaggaca
      601 ttaataatcg ctggcagcag gaacagttgc ggcgccaggc ggaagagctt cagaagcagc
      661 tcgagcggct ccagcaacaa cagcagagtc agttgtcgcg cagcgggcag cagggtcaat
      721 ccggccaaag cggacagtcc ggccagagtg ggcagtccgg ccaaagcggg cagtctgggc
      781 agtcaggacg ttccggacag agcgccagcg cgcaacagtt gcagcggcag atcgatcagt
      841 tgaagcagat ccagcaggac atggcgactg cgcagaagaa tgcgcagcaa ggcggcgatc
      901 cggcgcaggc ggaagcggca gcaaggcgcg cggccgagcg gctgaacgag atgagggaca
      961 gcctggcgcg cggccggcag caggatgccg cggcgcagtt gaccgacctg gcggagcggg
     1021 ccaacaagct cgacgccgaa cagcacgaaa tcgaaggccg gatgaagcag gccttcggcg
     1081 atccttattc ggccgatccc cggcagcgga atccgcaggg cgctccttcg cggcagtccg
     1141 tggaagacat ggccaaggag aaggagaaga tggccgggga gctgggcgaa atacagaagg
     1201 aagtccagca gcaggctcgt aatctggctg gggcgcagcc gcaagcttcg acgcggctac
     1261 gcgaaggctt gagcgcgatt cagcagaacg aagcgcagca gcgcatgaag gatgcagcag
     1321 gatggctgcg gaacggacag gggcggtaca tcaccaatcg cgaggcgccg gtgacgcagg
     1381 cgctggacgg attgaaggac agccttcagc gggcacagca ggccttgggc ggcaactcgc
     1441 aggagcaggc gcgcaacgac acggagcgcc agcttcaaaa catcgagcgc ttgcgcgccc
     1501 aattgcagaa ttactcccag ggggggaaga acggccagca gccgggcaat caaagcggcc
     1561 aaggaaacca gaatggccag caaaacggaa atggccagca gccaggccag ggcaatcaag
     1621 gcggcaacca gggcggtcag cgtaatggcg ca
//
LOCUS       DASQCV010000483         4315 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1928872, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000483 DASQCV010000000
VERSION     DASQCV010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4315
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1928872"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            201..662
                     /locus_tag="VEQ16_07320"
     CDS             201..662
                     /locus_tag="VEQ16_07320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63681.1"
                     /translation="MAKYSSARVGFLLCAFLLPGLIGTFASFSIPAPLVDEINQERAL
                     QAVLDAPTPQAQAAAIAALSGNETQQAMAAQAGMSQDVPDTALVDPDTAAIVQKGTGP
                     LADRVAAAEKNMRAEVMEQARSEAYRIRLMVITMTVLGAIFGVFLMGPDRE"
     gene            659..1930
                     /locus_tag="VEQ16_07325"
     CDS             659..1930
                     /locus_tag="VEQ16_07325"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HYP63682.1"
                     /translation="MTNHVNSYYAATAHKQDARPALSGSESADVCVIGGGFTGINAAL
                     ELAERGVSVIVLEAVRVGFGASGRNGGQIVNGYSRDLDVISARYGESAGQVIGSLADT
                     GGDIIRERVQKYGIQCDLREGMMITALTGKQMSGLEHHVRTWKGFGYDQFELFDKKGL
                     ARHVVTERYVGGLLDKRGGHIHPLNLVQGEAAAFESLGGRIFENSPVLSVDTENAVVK
                     TASGEVRARHVLVCGNAYLQGVLPNLEGRVMPVSTQVLATEPLGAEAERLLPTNICVE
                     DANYVLDYFRRTADGRLLYGGGIVYGGTDPASIKAKVLPLMLKTFPGLKEARIDFTWS
                     GNFALTLTRFPQIGKLAPKVYFSHGDSGHGVTTTHLLARLLAESVTGDNSRFDVFAGL
                     PYFPFPGGKTFRVPLTVAGSWWYRARDVLGV"
     gene            complement(1927..2409)
                     /locus_tag="VEQ16_07330"
     CDS             complement(1927..2409)
                     /locus_tag="VEQ16_07330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HYP63683.1"
                     /translation="MPPSTASETDMGNDKIVHAGQCHCGAVRFEATLSDGFNTIRRCT
                     CSYCRMRGAIAVSAELGGIKFLRGEDALTSYRFNTGAAQHFFCSRCGIYTHHQRRSNQ
                     NQYGVNVACLDGVSPFDFLEVPVLDGTNHPNDNGGAVRRTGTLRFIPADEPARASNED
                     "
     gene            2537..3886
                     /gene="gltX"
                     /locus_tag="VEQ16_07335"
     CDS             2537..3886
                     /gene="gltX"
                     /locus_tag="VEQ16_07335"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009332 - glutamate-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HYP63684.1"
                     /translation="MTKVRFAPSPTGYLHVGNARAALVNFLFARAEGGTFLLRLDDTD
                     TERGRPEFEQGIYDDLRWLGIEWDETAKQSERLARYDEVAEQLKASGRLYPCFENEDE
                     LAAKRAALVKRKLPPVYDRAALAMTAEQRARAEANGKTPYWRFKLSDGAAGWNDLVLG
                     ARNIRLNTVSDPVLIRADGSPLYTFTSVVDDADMGVTHIIRGEDHVSNTAVQIDLFQA
                     ITKSPVPRFAHLPLISGGDGEKLSKRIGSISLRSLRKDGLEPAAITSYLARLGTNKDP
                     APLPLPELVKSFSLADFSRSPPRFDARQLAGLNRKLLHHMGFEEVRDRLPDGADQKFW
                     DAIRGNVDMLSEARRWWDVVAGDFSLPELPGNSTVLRAALDTLPPEPWDESSWKPWTS
                     AISEATGAKGRDLYQPLRLVLTGEEHGPEMAKLLALIGRERAARRLTACVAARGTPG"
     gene            3919..>4315
                     /locus_tag="VEQ16_07340"
     CDS             3919..>4315
                     /locus_tag="VEQ16_07340"
                     /inference="COORDINATES: protein motif:HMM:NF021492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP63685.1"
                     /translation="MDIFDEVAEDLRHDQALRLAKRYGAWLLAACVAVLAGVAGQEGW
                     QAWQKSQNDKAALQYLALTKGLDQVETPAPADQAAKAAQALNAFAATAPEGYKTLANL
                     RAAGLYMDAGQLPQAEALWTGVADDSAADP"
BASE COUNT          745 a         1252 c         1536 g          782 t
ORIGIN      
        1 agcaggggct cgatgacatg accgggatca attccggcat attcctgctg atcggcgtgc
       61 tcggcctgat cgaggctatt ttcgggctgg tgctgctggt ctggttctgc ttgcgcggca
      121 cgcgcgggcc gaaccggttt gggcccgatc cgctgcaagc catttgacag gggcggaaaa
      181 acctgacgaa gccatgcgcc atggcaaaat attcctccgc gcgcgttggc ttcctgctat
      241 gcgcttttct gcttcctggc ctgatcggca ccttcgcgag tttttccatc cctgccccgc
      301 tggtggatga gatcaaccag gagcgggcgc tgcaggccgt gctggacgcg cccacgccgc
      361 aggcacaggc agcggccatt gccgcgctga gcgggaacga gacgcagcag gcaatggctg
      421 cccaggcggg gatgagccag gacgtgccgg atacggcact tgtggacccg gacactgccg
      481 ccattgtaca gaaaggcacg ggaccgctgg ccgaccgcgt ggcggcggcg gagaagaata
      541 tgcgcgccga agtcatggaa caggcgcggt ctgaagcgta caggatccgg ctgatggtca
      601 tcaccatgac cgtacttggc gccattttcg gcgttttctt gatggggcct gacagagaat
      661 gacaaaccat gtgaactctt attacgccgc cacggcgcat aagcaggatg cgcgcccggc
      721 gctttccggt agcgaaagcg ccgatgtgtg cgtgatcggc ggcgggttta ccggcatcaa
      781 tgcggcactg gagctggccg agcgcggtgt ttccgtgatc gtgctggagg cggtgcgcgt
      841 ggggttcggc gcctcggggc gcaatggcgg gcagatcgtg aacggctatt cgcgcgacct
      901 ggacgtgatt tcggcgcgtt atggcgagag cgcggggcag gtgatcgggt cgctcgccga
      961 tacgggcggg gacatcatcc gggagcgcgt gcagaaatac ggcatccagt gcgacctgcg
     1021 cgaagggatg atgattaccg cgctgacggg caagcagatg agcgggctgg agcatcatgt
     1081 gcgaacctgg aaagggttcg ggtacgacca gttcgaattg ttcgacaaga agggcctggc
     1141 caggcatgtg gtgacggagc gttatgtcgg cgggctgctg gacaagcgcg gcgggcatat
     1201 tcatccgctc aacctggtgc agggcgaggc ggcagcgttt gagagcctgg gcgggcggat
     1261 tttcgagaat tcgccggtgc tgtccgtgga tacggaaaac gcggtggtga agactgcttc
     1321 cggcgaggtg cgggcgaggc atgtgctggt gtgcggcaat gcctatctgc aaggggtgct
     1381 gcctaacctg gaagggcggg tgatgccggt gtccacccag gtgctggcga cggagccgct
     1441 gggcgccgag gcggaacggc tgctgccgac caatatctgt gtggaagatg ccaattacgt
     1501 gctggattat ttccgccgca ccgccgatgg gcggctgctt tatggcggcg gcatcgtgta
     1561 tggcgggacc gatccggcga gcatcaaggc gaaggttctg ccgctgatgc tgaagacgtt
     1621 tccggggctg aaggaggcgc ggatcgattt cacctggagc gggaattttg ccctcacgct
     1681 cacgcgcttt ccgcagatcg ggaagctggc gccgaaggtc tatttcagcc atggcgatag
     1741 cgggcatggg gtgacgacga cgcatctgct ggcgcggctg ctggcggagt cggtgaccgg
     1801 ggataattca cggttcgatg tgtttgccgg gctgccttac ttcccgttcc cgggcggaaa
     1861 gacgttccgg gtgccgctga cggtggcggg gagctggtgg taccgggcaa gggatgtgct
     1921 gggggtttaa tcctcgtttg aggcgcgcgc cggctcgtcc gcggggatga agcggagggt
     1981 gcccgtgcgc cgcacggcgc ctccgttgtc gttggggtga ttggtgccgt ccaggaccgg
     2041 cacttccaga aagtcaaagg ggcttacgcc atcgaggcag gcgacattga caccatattg
     2101 gttctggttc gagcggcgtt gatggtgcgt atagatgccg caacgtgagc agaagaaatg
     2161 ctgcgccgct ccggtattga agcggtagct cgtgagagcg tcttcaccgc gcaggaattt
     2221 tatgccgccc agctctgcgg aaacggcgat ggcgccgcgc atccggcaat aggagcaggt
     2281 gcagcggcgg atggtgttga agccgtcgct caatgtcgcc tcgaaacgca cggccccgca
     2341 atggcattgg cccgcatgca cgattttgtc gtttcccatg tcggtctcgc tggctgttga
     2401 tggcggcatg ctacgcagac tcccgaagcg acggcaagga tcgggggtta ggtgccgggg
     2461 ccgacgccgg gcattcaact agaatggcgg gcaccacagc cttccccgca ccccgcaaat
     2521 ggtctacccc ccgcaaatga ccaaagttcg cttcgccccc agccccacgg gctatctgca
     2581 tgtcggcaac gcgcgcgcgg cgctggtgaa ttttctcttc gccagggcgg agggcggtac
     2641 cttcctgttg cgcctggacg ataccgacac cgagcgcggg cggccggagt tcgagcaggg
     2701 catttatgac gatctgcgct ggctcggcat cgaatgggat gaaacggcca agcagtccga
     2761 gcggctggca cgctatgacg aggtcgcgga acagctgaag gcgtcggggc ggctttatcc
     2821 ctgtttcgag aatgaggatg agctggcggc caagcgcgcg gccttggtga agcgcaagct
     2881 gccgccggtt tatgaccgcg ccgcgctggc catgacggcg gagcagcgcg ccagggccga
     2941 ggccaatggc aagacgcctt attggcgctt caagctctcg gatggtgctg cgggctggaa
     3001 cgatctcgtg ctgggggcac gcaatataag gctcaatacc gtgtcggacc cggtgctgat
     3061 ccgcgccgat ggctccccgc tttatacctt cacctcggtg gtggacgatg cggatatggg
     3121 cgtcacccat atcatccgcg gcgaggacca tgtgtccaac acggcggtgc agatcgatct
     3181 gttccaggcc atcacgaaaa gcccggtgcc gcgttttgcg catctgccgc tcatctcggg
     3241 tggggatggc gaaaagctct ccaagcgcat cggctccatc tcgctgcgga gcctgcgcaa
     3301 ggatgggctg gagccggccg ccatcacctc ttatctggcg cggctcggca ccaacaagga
     3361 ccctgccccc ctgcccttgc ccgaactggt gaaaagcttc tcgctggcgg atttctcgcg
     3421 ctctccgccg cgcttcgatg cccggcagct ggccgggctc aaccgcaagc tgctgcatca
     3481 tatgggcttc gaggaggtgc gggacaggct gccggacggg gcggaccaga aattctggga
     3541 cgcgattcgc ggcaatgtgg acatgctgag cgaagccagg cgctggtggg acgtggtcgc
     3601 gggcgatttt tcgctgcctg agctgccggg caattccacc gtattgcggg cggccttgga
     3661 tacgctgccg ccggagccct gggatgagag cagctggaag ccctggacat ccgctatttc
     3721 cgaagccacg ggcgccaaag ggcgggattt gtaccagccg ctgcggctcg tcctcaccgg
     3781 cgaggagcac gggccggaaa tggcgaagct tctggcgctt atcggccgtg agcgggcggc
     3841 gcggcgcctc accgcctgcg ttgccgcgcg cggcacgccc ggctaagaga aagcccggaa
     3901 gggttagagg acgcgcgcgt ggatattttt gacgaggttg cggaggatct gcggcacgac
     3961 caggccttaa ggctggccaa gcgctatggc gcctggctgc tggcggcctg cgtggcggtg
     4021 ctggccggcg tggccgggca ggaaggctgg caggcctggc agaagagcca gaacgacaag
     4081 gcggcgctgc aatatctcgc tctcacgaaa gggttggacc aggtggagac ccccgccccg
     4141 gccgaccagg cggccaaggc cgcgcaggcg ctcaacgcct tcgccgccac cgcgccggaa
     4201 ggctacaaga cgctcgccaa tctgcgcgcc gcagggctct atatggatgc cgggcaattg
     4261 ccccaggccg aggccttgtg gaccggcgtg gctgatgaca gcgccgccga cccgc
//
LOCUS       DASQCV010000484         3448 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2261342, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000484 DASQCV010000000
VERSION     DASQCV010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3448
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2261342"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /locus_tag="VEQ16_07345"
     CDS             complement(<1..806)
                     /locus_tag="VEQ16_07345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63686.1"
                     /translation="MLDIETFDNLRGGNVVYKALAHPFAARKLAALARLAGPVAIFDP
                     DGIAAPLLALCPEFKVRGLYVQDVQAVGRWRGEHQMQALTELPRAQAESVLVAAFDAG
                     RMAERLGAFLPPGATLLTLDTAKLPPEWLTVPERYLDAKNFATNFVFFRDDDRFATRL
                     TTVNYWSGYGAKEIRFQHILYAVDGAVLAEWEDAAPEGPGGYVLDSREIRARFGLGPF
                     TGQLFLHAVGVAGHDVVKYALDTYATDNGVSLSCTHDANAWPSARFAGLPA"
     gene            complement(812..1738)
                     /locus_tag="VEQ16_07350"
     CDS             complement(812..1738)
                     /locus_tag="VEQ16_07350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mitochondrial fission ELM1 family protein"
                     /protein_id="HYP63687.1"
                     /translation="MITARLICTDIAGLRNQALGLAEAAGFTPDLRTLRFRAPWEKIP
                     TSLWVNPHWAVEADVFAPPVPPVVMGCGGAGARVAASLRGADVKAVAIQHPRMDLKKF
                     DAVLAGRHDGIAGPNVIVTRTALHRVTQARLQAERDIWAPFFAPYRRPLAAVLLGGNN
                     GRYRFGVPEAQALAAQLAGVARDYGLVITPSRRTGGAELSILRAALEPLGAWIWDFTD
                     QNPYFGMLACADAIIVTADSVSMVSEAVATSVPVYLARLPGRSARIGRFMDDLVEDGR
                     VRDFAGRLELWDTSPLDDTEWAGAELRRRLGL"
     gene            1818..2804
                     /locus_tag="VEQ16_07355"
     CDS             1818..2804
                     /locus_tag="VEQ16_07355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003620222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase/aspartoacylase
                     family protein"
                     /protein_id="HYP63688.1"
                     /translation="MSSGHPPEPNLCPPTVAGLPEFVLALAKPDLSPWLMGNTGVPGF
                     TTLDSGLPGPHVLAVSLIHGNEFAGAIVLAELLAAKFRPARGRLTLGFANLAAFAMFN
                     PANPTASRYVEEDMNRVWDDYQLFGVRHSVELDRARKILPLVDAADMLLDLHTMLWPA
                     APSLLCGAGPRGKELAFAIGTPGQVVADAGHVGGKRLIDYGRFTEGADQQAACVLVEA
                     GPHWQDCAVAQCRATLRGLLRHAGMIEAPAPAQKPAFAQVVQTVTARSNRFQFVRPFC
                     GGEVVRRAGTVIAYDGEQEVVTPEDNMMLVMPSLRVSHGQTAVRLARMEDGY"
     gene            complement(3037..>3448)
                     /locus_tag="VEQ16_07360"
     CDS             complement(3037..>3448)
                     /locus_tag="VEQ16_07360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HYP63689.1"
                     /translation="LRRQGAFLRAADGRERRLRVADPVPVAQMVGSMSWRFMEEPLRS
                     HVLHRLDRLAAVTDYRCAAHQYRMLAGGHCHAQMFRKLLPWDHAAGVLLHREAGGYSK
                     HFDGSDYRPTHVTGGLLLAPDEASWEALADALIR"
BASE COUNT          626 a         1109 c         1149 g          564 t
ORIGIN      
        1 gccggcaggc cagcgaagcg ggcggagggc caggcattgg cgtcatgcgt gcaggaaagc
       61 gagacgccat tatccgtggc gtaggtgtcg agcgcgtatt tcaccacgtc atgcccggcg
      121 acgccgacgg cgtggaggaa gagctggccg gtgaagggac cgaggccgaa gcgggcgcga
      181 atctcgcgac tgtccagcac atagccgccg gggccttcgg gcgcggcatc ttcccattcg
      241 gccagcacgg cgccgtccac ggcgtagagg atgtgctgga agcgtatctc cttggcgcca
      301 tagccggacc agtaattcac cgtggtcagg cgggtggcga aacggtcatc atcgcggaag
      361 aagacgaaat tggtggcgaa attcttcgcg tccagatagc gctccggcac ggtgagccat
      421 tcgggcggga gcttggcggt gtcgagcgta aggagcgtcg cgccgggcgg caggaaggcg
      481 cccaaacgct cagccatgcg cccggcatcg aaggcggcta ccagcacgct ctccgcctgt
      541 gctcggggca gctcggtcag cgcctgcatt tgatgctcgc cgcgccagcg ccccaccgcc
      601 tgcacatcct gcacatagag gccgcgcacc ttgaattccg ggcacagcgc cagaagcggt
      661 gcggcgatgc catcggggtc gaaaatggcg acgggccctg ccaggcgcgc cagagcggcc
      721 agtttgcgcg ccgcaaacgg atgcgcgagc gccttgtaga ccacattgcc gccgcgcaga
      781 ttatcaaacg tctcgatatc cagcatgtgt tctacaaccc caagcggcgg cgcagctccg
      841 cgccggccca ttccgtatcg tcgagcgggg atgtatccca cagctccagc cttccggcaa
      901 agtcgcgcac gcggccatct tccaccagat catccatgaa gcggccgatg cgggccgagc
      961 ggccgggcag ccgggccagg tagaccggga cggatgtggc cacggcctcg gacaccatgg
     1021 agacggaatc ggcggtgacg atgatggcat cggcgcaggc gagcatcccg aaatagggat
     1081 tttggtccgt aaaatcccaa atccaggcgc cgagcggttc gagggcggcg cgcaggatgg
     1141 atagttctgc tccgccggtg cggcgcgagg gagtgatgac gagcccgtaa tcacgtgcca
     1201 ccccagccaa ttgcgcggcc agagcctggg cttccggcac gccaaaccgg taccgcccgt
     1261 tattgccgcc cagcagcacg gcggcgagag ggcgcctgta gggcgcgaag aagggcgccc
     1321 agatgtcacg ctccgcctgg aggcgtgcct gggtgacacg gtgcaaggcc gtgcgggtaa
     1381 cgatgacatt ggggccggcg atgccgtcat gccgcccggc gagcacggca tcgaattttt
     1441 tcagatccat gcgcgggtgc tggatggcca ccgctttcac gtccgcgccg cgcaggctgg
     1501 ccgccacgcg cgcccctgcc ccgccacacc ccatcacaac cggcggcaca ggcggggcaa
     1561 aaacatccgc ctccaccgcc cagtgcgggt tgacccaaag gctcgtggga attttctccc
     1621 acggcgcgcg aaaccgcagc gtgcgcagat ccggggtaaa accggccgcc tcggccaggc
     1681 caagcgcctg attacgcagc ccggcaatgt ccgtgcagat gagtctggcg gtgatcatgc
     1741 gtcgggcttt ggctgggtgc ggcgactgcg tcaacccgcg cattgccaga cgcggcaggc
     1801 ggattacatt gatccttatg agttctggac acccgcccga accgaacctt tgcccgccca
     1861 cagtggcggg gctgccggag ttcgtgctgg ccctggccaa gcccgacctc tcaccctggc
     1921 tcatgggcaa tactggcgtg ccgggcttca cgacgctcga ttcgggcctg cccggcccgc
     1981 atgtgctggc ggtgtcgctg attcatggca atgaatttgc cggtgccatc gtgctggccg
     2041 agctgctcgc cgccaaattc cgcccggcgc gcgggcggct gaccctgggc ttcgccaatc
     2101 tcgccgcctt cgccatgttc aatcccgcca atccgactgc ctcgcgctac gtggaagagg
     2161 atatgaacag ggtgtgggat gattatcagc tcttcggcgt gcgccattct gtggagctcg
     2221 accgggcacg caaaatcctg cctcttgtgg atgcggctga catgttgctg gatttgcaca
     2281 ccatgctgtg gccggcagcg cccagcctgc tctgcggcgc gggcccgcgc gggaaagagc
     2341 tggccttcgc catcggcaca ccgggccagg tggtagccga tgccgggcat gtgggcggca
     2401 agcgtctcat cgattatggc cgcttcaccg aaggcgcgga ccagcaggcc gcctgcgtgc
     2461 tggtggaggc cgggccgcat tggcaggact gcgccgtggc gcaatgccgc gccacgttgc
     2521 gcgggctgct gcgccatgcc ggcatgatcg aggcgccggc accggcgcaa aaacccgcct
     2581 tcgcgcaagt ggtgcagacc gtgacggcac gcagcaatcg cttccagttc gtgcgcccgt
     2641 tctgcggtgg cgaggtggtg cgccgcgccg gcacggtgat tgcctatgac ggcgagcagg
     2701 aggtggtgac gccggaggat aacatgatgc tggtgatgcc gagcctgcgc gtgagccatg
     2761 ggcagacggc ggtgcggctg gcgaggatgg aagacggata ttaaacacgc gccaatccgt
     2821 ttcgtgtcga attgcaaata aattaaaaat aattcggcca gatcgcttgt ctcggcctgg
     2881 aagcctcata atcaatccgg cttagcaaca ctcgatgctg cgcggcatga tctgcatcta
     2941 gcgtcttcag ctagaagctg aagacgctag attttgtttg agcgagcaat agacgtttag
     3001 attgaccctt gcgggtcaat ctaaacgtct attgctctag cggatcagcg cgtccgccaa
     3061 agcctcccag ctcgcctcgt caggcgccag aagcagccca cctgtgacgt gagtggggcg
     3121 gtaatcggag ccgtcgaaat gtttgctgta gccgcccgcc tcgcgatgca gcagcacgcc
     3181 cgcggcatga tcccaaggca gcagcttgcg gaacatttgc gcatggcaat ggcctcccgc
     3241 cagcatgcgg tattgatgcg cggcgcagcg gtaatcggtg acggcggcga gacggtccag
     3301 ccggtgcagc acatgggagc gcaacggctc ctccatgaag cgccaggaca tggagccaac
     3361 catctgcgca accggcaccg ggtccgccac gcgcaaacgc cgctcgcgcc catccgccgc
     3421 gcgcaaaaat gccccctgcc tgcgcagc
//
LOCUS       DASQCV010000485         4596 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1102567, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000485 DASQCV010000000
VERSION     DASQCV010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4596
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1102567"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..519)
                     /locus_tag="VEQ16_07365"
     CDS             complement(<1..519)
                     /locus_tag="VEQ16_07365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook capping FlgD N-terminal
                     domain-containing protein"
                     /protein_id="HYP63690.1"
                     /translation="MMTNLATPSATAAANAASVAASTTATKSSSSGSGSAASLTQADF
                     LQLLTAQLKYQSPTNPADPTQMASEFAAISTVEGINGLNTKLSDLTTSTGAAQMAQAA
                     SLVGKQVAVSGNNLTANSAGTAAGAFTLAGASTNTNVTILNSDGSIAGTVSLGALSPG
                     QQNFSWNGGTAGT"
     gene            complement(516..956)
                     /gene="flgC"
                     /locus_tag="VEQ16_07370"
     CDS             complement(516..956)
                     /gene="flgC"
                     /locus_tag="VEQ16_07370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HYP63691.1"
                     /translation="MSTTDIFSIAGSALDAQDMRMAAIASNLANVDSVVKPGEQPYRA
                     HELVFQAAQLGGSNYGTGGTGDTSDPGVQVVGTVESNAQPTRTYDPSSSYADSSGYVT
                     GSNVSQVDEMVNMIDSSNAYSASVAMLQQASRIDQQMISSFQVT"
     gene            complement(997..1356)
                     /gene="flgB"
                     /locus_tag="VEQ16_07375"
     CDS             complement(997..1356)
                     /gene="flgB"
                     /locus_tag="VEQ16_07375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009429 - bacterial-type flagellum basal
                     body, proximal rod [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HYP63692.1"
                     /translation="MQVGFLDFYGGVLNVRQERADLIANNIANADTPGYKAADISFGD
                     ALAVQLGGTAESGVDGSQPQYRTDGVVGLNGNDVSLDTERVNAAANAEAAQAATVFLH
                     QSTADLVTALRPNPAGI"
     gene            complement(1736..2191)
                     /locus_tag="VEQ16_07380"
     CDS             complement(1736..2191)
                     /locus_tag="VEQ16_07380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63693.1"
                     /translation="MGETAEANERIVCAILAEQVAALRERMDATAAFDLLWRTSALLS
                     WLSGLLSDASAHFSHSPHANPVLERERTEAITEIAEIRRALDDLAFLQAQRQDFAKQI
                     ADCVVIALERMAVAEMPPGTSFSSSDLAALYVSDDQRKLHDSVVTRLRS"
     gene            complement(2204..2620)
                     /locus_tag="VEQ16_07385"
     CDS             complement(2204..2620)
                     /locus_tag="VEQ16_07385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYP63694.1"
                     /translation="MGHPVRKTAEWSPLSMPTILVLDDSATMVMSLSHILKGAGYDVE
                     TGMNGREGITKLNDGVKPSVILTDLNMPELDGIGFIKEARKISSTRFTPIIVLTTESG
                     GRKRDEARAAGASGWLTKPAEPNQLLSVVKQLCPAR"
     gene            3065..3403
                     /locus_tag="VEQ16_07390"
     CDS             3065..3403
                     /locus_tag="VEQ16_07390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HYP63695.1"
                     /translation="MVSGIGAVASPAMSAAAAGQAAASAAAANGIAATGSTTQPGFGA
                     MLNQALEHVSTAQTQAAASEAGFAAGVPGDTLAKALVASDRAAVAWNATVAARNELVA
                     AYQTVMNMQF"
     gene            3406..>4596
                     /gene="fliF"
                     /locus_tag="VEQ16_07395"
     CDS             3406..>4596
                     /gene="fliF"
                     /locus_tag="VEQ16_07395"
                     /inference="COORDINATES: protein motif:HMM:TIGR00206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HYP63696.1"
                     /translation="MAEWHQFLTRLTQNLAALPKILWVAGGVVLVSLGVALWFELSGP
                     PYAVLEEGLSPADGGKVIAQLQKLGIPYQLQAAGNIIMVPAPELAQARLQLGQAQVPG
                     SDVQTAWAQLESAPMTASDLAQSTMAQQALQLSLQQSIQSMNGIRSAQVFLALPPETP
                     FLADQPKPAASVVIEADAAAAQAQGQAIANLIAGAVPGLAANDVTVETTGGVTVFPAG
                     GALNTGTQLQTVAQIEAVAAARVAALLIPLVGAGNFQTDVSANLDFTQEHIHQVTYGP
                     GHLVSHEILSQSMNMDGSTQAIGIPGALSNEPPSPTTATPAPQADTGNQSASNNGASK
                     ASVPPQPRQSSSNSDQSYAVDESDADIVNPDWAVKSVAISVVLDKTALKGPVTLDQVK
                     AAIAA"
BASE COUNT          918 a         1343 c         1463 g          872 t
ORIGIN      
        1 cgtgcccgcg gtgccgccgt tccagctgaa gttttgctgt ccggggctga gcgcgccgag
       61 cgacacagtg ccggcgatgc tgccatctga attgaggatg gtgacattgg tgttggtgga
      121 agcgccggcc aaggtgaagg cacccgcggc cgtgccggcg ctgttcgcag tcaaattatt
      181 cccactcacc gccacctgct tgccaaccag agaagcggcc tgcgccatct gtgcagcacc
      241 tgtgctggta gtgagatcgc tgagcttggt gttgagcccg ttgatgccct ccaccgtcga
      301 gatggcggca aactccgagg ccatctgcgt aggatcagcc gggttggttg gcgattgata
      361 tttcagctgc gcggtgagga gctgcagaaa atcggcttgg gtcaggctgg ccgccgagcc
      421 agaacctgag ctggacgatt tcgttgctgt agtggaggcg gcaaccgagg cggcattggc
      481 agcggcggtg gcgctgggtg tggcgagatt ggtcatcatg tcacctgaaa gctggagatc
      541 atctgctggt cgattcggct ggcctgctgc agcatggcga ccgatgcgga ataggcgttg
      601 gaactgtcga tcatgttcac catctcatcg acctggctga cattggagcc cgtgacatag
      661 ccggatgaat ccgcgtagct gctcgatgga tcgtaagtgc gcgttggctg cgcgttgctt
      721 tccaccgtgc ccaccacctg cacgccgggg tcggacgtat ctcctgtgcc gcccgtgccg
      781 taattggacc cgcccagctg ggcggcctgg aacaccagct catgcgcgcg ataaggttgt
      841 tcgcccggtt tgacgacaga atctacattg gcgagattgg acgcgatcgc cgccatgcgc
      901 atatcctgcg catcgagcgc gctgccggcg atggaaaaaa tatcagttgt gctcaaggca
      961 tatttccttc tttcccatac ccgctctcca ccactgtcag atcccggccg gattgggccg
     1021 cagcgcggtg accagatccg ccgtggattg gtgcaggaag accgtggccg cctgcgccgc
     1081 ctccgcattg gcggcggcgt tcacgcgctc agtgtccagc gacacgtcat taccattcag
     1141 ccccaccacg ccatcggtcc tgtattgcgg ctggctgcca tcgacgccgc tctccgccgt
     1201 accgccaagc tgcacggcca gcgcatcacc gaaggaaata tccgcggcct tgtaaccggg
     1261 cgtgtccgca ttggcgatat tgttggcgat gaggtccgcg cgctcctgcc gcacattcag
     1321 cacaccgcca taaaaatcga gaaagccgac ctgcatggat aaaacccttt tcaaccaaga
     1381 cgcggagaga gtgtcagaga caaaatgacc gcacctttgc agatgttttg tagggaaccg
     1441 ttcttaaaaa gacgtaaatg aagacatgaa taagccgtgg ggccggtagt atgctttccc
     1501 tgttccttca atgctttgcg tggattaacg aggatagccc tcttacaatc ctcttatctc
     1561 ttcaaaatct ttagaaaaaa taaaccaaat tccgcgacaa attttttgtg tccgcttcga
     1621 atttatagtt ttcccacgcc cacccggcaa tgccaccatg cgccattgcc gggccgcgaa
     1681 gaggcggttc ggcgtcaaaa tggtcaggaa ggagaggcgt ggtgccgcgg aaaagtcagc
     1741 tgcgcaggcg ggtcacgacg ctgtcatgca gcttgcgctg gtcgtcgctc acatagaggg
     1801 cggcgagatc ggatgatgag aaactggtgc ccggcggcat ttccgcgacg gccatacgct
     1861 ccagcgcgat gaccacgcaa tcggcgatct gcttggcgaa atcctggcgt tgagcctgga
     1921 gaaaggcaag atcatccagg gcgcggcgga tttccgcgat ctcggtaatg gcctcggtgc
     1981 gctcgcgctc gagcaccgga ttggcatggg gggaatggga aaaatgggcc gaggcgtcgc
     2041 tgagcaggcc cgacaaccag gagaggagag ccgaggtacg ccagagcaga tcgaaggcgg
     2101 ccgtggcatc catgcgctcg cgcaatgcgg cgacctgctc cgcaaggatg gcgcagacaa
     2161 tccgttcatt ggcttcggcc gtttcgccca tagtgatgga tcctcagcgc gcggggcaga
     2221 gttgcttgac gacggataaa agctggttcg gctcggccgg cttggtcaac cagccggacg
     2281 cgccggcggc gcgggcctcg tcacgcttgc gcccgccgga ttccgtggtc agcacgatga
     2341 tcggtgtgaa tcgtgtcgaa gagattttgc gcgcctcctt gatgaagccg atgccatcga
     2401 gctcgggcat gttgaggtcg gtgagaatga ccgagggttt gaccccgtca ttcagcttgg
     2461 tgatgccctc ccggccattc atgccggttt cgacatcata accagcgccc ttgagaatat
     2521 gcgacagact catgaccatt gtggctgagt cgtcgaggac aagtattgtt ggcatcgata
     2581 aagggctcca ttcggctgtt tttcgcacgg gatgacccat ggtgcctgga aaatgttgaa
     2641 acgcggttaa gaccgcgtca cggaagatac gcttcggcaa acgggaatac cgggcgcaca
     2701 gcgccctcgt cccgcacggc gtcatcactt tatagagagc cacaatagag aacctcgcgc
     2761 atgctggcga ggtaccgcct catcgccgct taacggcgta caccgccgcg tgaattttta
     2821 agactccatt agcccgctgc ctttatctcc tgtcgtcaca ccaggcaccg gcggacgcga
     2881 ggagaatcat ggtgcgcgaa gttagagttt cgttaagggg tgaatggtag atgaatcaga
     2941 gttttctcac gaaaatgaag ggagatcatg acatgattca caacacgaat catgacatga
     3001 atcatggcat gtttcgtgcc gcggatcgtg gtgcggcaac gcaatatgtg ccggggagcc
     3061 tgtcatggtg agcggcattg gcgcggttgc cagcccagcg atgtccgcgg cggcggcggg
     3121 gcaggcagca gcaagcgcgg cggcggccaa cggcatcgct gcgacgggca gcacgacaca
     3181 gcccggtttt ggagcgatgc tgaaccaggc actggaacat gtcagcacgg cgcagactca
     3241 ggcagccgcc tcggaggctg gtttcgccgc cggcgtaccg ggcgacacgc tggcgaaagc
     3301 gctggtggcg agcgaccgcg cggcagtggc atggaacgcc accgtggcgg cgcgtaacga
     3361 gctagtcgcc gcctatcaaa ccgtcatgaa catgcagttc tgaccatggc tgaatggcac
     3421 caattcctga cccggctgac acaaaacctg gcggcattgc cgaaaattct ctgggtggcg
     3481 ggcggtgtcg tgctggtctc gctcggcgtg gcattgtggt tcgagttatc gggcccgcct
     3541 tatgctgtgc tggaggaagg gctttcgcca gcggatggcg gcaaagtgat cgcgcaattg
     3601 cagaagctcg gcattcccta tcagctgcag gcggcgggca acatcatcat ggtgccggca
     3661 ccggaactgg cgcaggcgcg gctgcagctg ggccaggcgc aggtgccggg ctccgatgtg
     3721 cagaccgcct gggcgcagct ggaaagcgcg ccgatgacgg cgtccgacct cgcgcaatcc
     3781 accatggcgc agcaggcgct gcaattatcg ctacaacaat ccatccagag catgaatggc
     3841 atccgcagcg cgcaggtgtt tctggcattg ccgccggaaa caccctttct ggccgaccag
     3901 cccaagccgg cggcctctgt cgtcatcgag gcggatgcgg cggcggcgca agcgcagggc
     3961 caagccatcg ccaatctcat cgccggcgcg gtgccggggc tggcggccaa tgacgtgacg
     4021 gtggaaacca cgggcggcgt taccgtgttt ccggccggcg gcgcgctgaa tacgggcacg
     4081 cagctgcaga ccgtggcgca gatcgaggcg gtggcggcgg cgcgcgtcgc ggcgctgctg
     4141 attccgctgg tcggggcagg aaattttcag acggatgtgt cagccaatct cgatttcacg
     4201 caggagcata tccatcaggt cacttatggg ccgggtcatc tcgtctcgca tgagattttg
     4261 tcgcaatcca tgaacatgga cggcagcacg caagccattg gcattcccgg cgcgctgtcc
     4321 aacgaaccgc catcgcccac caccgccacc cctgccccgc aggcggacac tggcaaccag
     4381 tcggccagca ataatggcgc gagcaaagcc agcgtgccgc cgcaaccgcg gcagagcagc
     4441 tcgaacagcg accagagcta tgcggtagat gagagcgatg ccgatatcgt aaatcccgac
     4501 tgggccgtga aatccgtggc catctccgtg gtgctggaca agacggcgct gaaagggccg
     4561 gtgacgctgg accaggtaaa ggccgctata gctgcc
//
LOCUS       DASQCV010000486         1524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2427972, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000486 DASQCV010000000
VERSION     DASQCV010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2427972"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..636)
                     /locus_tag="VEQ16_07400"
     CDS             complement(<1..636)
                     /locus_tag="VEQ16_07400"
                     /inference="COORDINATES: protein motif:HMM:NF013106.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic peptidoglycan transglycosylase"
                     /protein_id="HYP63697.1"
                     /translation="MARRPSAHNPSQAVTSPASPKAAPKPVSKPTLKTVPKPAAKPNP
                     PKKPAVKIPQMPARLRRTGRLAWAGARLALIAFIWGAVALGLVALWFTWDLPNPATTL
                     TTPRRPAILLRDPSGQLVARFGDAAGQVVLPQNLPAYVPAAFIAIEDRRFYQHGAFDG
                     EGIARALAADLIHRHVVQGGSTLTQQVAKTLFLGNERTARRKVQEAFLAEWL"
     gene            899..>1524
                     /locus_tag="VEQ16_07405"
     CDS             899..>1524
                     /locus_tag="VEQ16_07405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HYP63698.1"
                     /translation="MPVSHELLGGKLHVYRRENSPFWQCAAYVNGRNHRVSTKEESLS
                     RAKDFAEDWFLELKGKVKRGEAQSGGMTFDKAADQFLKEFVALTAGERSPVYVQGHQD
                     RLRVHLRPFFGKKGLTEITPGMVQDYRIHRMTSRKHPQTGEPMRPAKNTLHQEIVCLR
                     QVLKCANRHGWLAYLPDLSAPFRASGKVSHRGWFSLDEYNQLWRATQKR"
BASE COUNT          299 a          439 c          516 g          270 t
ORIGIN      
        1 gagccattca gcgaggaacg cctcctgcac cttgcggcgc gcagtacgct cattgccgag
       61 aaacagggtt ttggcgacct gctgggtgag ggtggagccg ccttgcacca catggcgatg
      121 gatgagatcg gccgccaaag cccgggcgat gccttcgccg tcgaacgcgc catgctggta
      181 gaagcggcga tcctcgatgg cgatgaaggc ggccggcacg taggcgggca ggttctgcgg
      241 caacaccacc tggccggcgg catcgccgaa gcgggcgacg agctggccgg atgggtcgcg
      301 gagcagaatg gccgggcggc gcggggtggt gagggtagtg gcagggttgg ggaggtccca
      361 ggtaaaccag agcgccacca ggccgagcgc caccgcaccc cagatgaagg cgatgagggc
      421 aagccgcgcc cccgcccagg ccaggcgccc ggtgcgccgc agccgcgctg gcatttgcgg
      481 gattttgacc gccggttttt tgggggggtt gggcttggcg gcgggcttgg gcacggtttt
      541 cagcgttggc ttggacaccg gcttaggcgc agctttgggc gaggcggggg acgtcaccgc
      601 ctggctcggg ttgtgtgcgg atggacggcg tgccatgggc cgattgctgc acaagcgcgc
      661 cgtgagcggt caacggggtt tgcggccagg ggggcttatt gcccatccca tgccgtccgg
      721 ggtaggggga agaccaagcg ggtgtggcgg aatggtagac gcaccggact taaaaaccga
      781 ttgagtccga tattttaatt gcaactaatt gatttaaata aattttttat aatcaaaaac
      841 ttacacaacc cttacacagt gctagacttt tacccaaaaa gcgcgtatgc gtacgcgtat
      901 gccggtcagt catgagctcc tcggcggaaa acttcatgta taccgccgcg aaaattcgcc
      961 tttctggcaa tgcgccgcct atgtgaatgg gcgcaatcac cgcgtcagca ccaaagaaga
     1021 aagcctcagc cgggccaagg attttgccga agactggttc ctcgaactca agggtaaggt
     1081 gaagcgcggt gaggcgcaga gcggcggcat gaccttcgac aaggctgcgg atcaatttct
     1141 gaaagaattt gtcgccctga cggcgggcga acgcagcccg gtttatgtgc aaggccatca
     1201 ggaccggctg cgcgtgcatt tgcgtccctt ctttggcaag aaggggctca ccgagatcac
     1261 gcccggcatg gtgcaggact accggattca ccggatgacc tcgcgcaagc atccgcaaac
     1321 cggcgagccg atgcggccgg ccaagaacac gctccaccag gaaatcgtct gcctgcgcca
     1381 ggtgctcaaa tgcgccaacc ggcacggctg gctggcctat ctgccggacc tttctgcgcc
     1441 gttccgcgcc tcgggcaagg tctcgcatcg cggctggttc tcgctggacg agtacaacca
     1501 gctctggcgc gccacgcaga agcg
//
LOCUS       DASQCV010000487         1773 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3256486, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000487 DASQCV010000000
VERSION     DASQCV010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3256486"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..400)
                     /locus_tag="VEQ16_07410"
     CDS             complement(<1..400)
                     /locus_tag="VEQ16_07410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63699.1"
                     /translation="MTQETAAQFLSSWQKNSEILRETYNPAMEHDACGVGLVAALDGK
                     KRRDVVMAGIEALGALWHRGAVDADGKTGDGAGIHIEIPQDFFAAEVKRGGDRLREGP
                     IAVGMVFLPKTDLGAQERCRQIVETEILNFG"
     gene            complement(457..711)
                     /locus_tag="VEQ16_07415"
     CDS             complement(457..711)
                     /locus_tag="VEQ16_07415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63700.1"
                     /translation="MPSTQWQRNRRVQPVFKNQPELPPAVLVIVVVGLVLWLVPPSLH
                     LGPIGTVVTGACALALAFTLARRVAEGQAQRRADAGTAAN"
     gene            complement(683..>1773)
                     /locus_tag="VEQ16_07420"
     CDS             complement(683..>1773)
                     /locus_tag="VEQ16_07420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP63701.1"
                     /translation="SVTIGAVERYITDTAFENGWVKPIRPVQERHQSVGIIGAGPAGL
                     AAAEALRSEGYQVTVYDRHDRVGGLLIYGIPGFKLEKEIVLRRWKWLEDGGIKFVLNA
                     DIGGRIPFADLRNAHDAVLVATGVYKSRELGGPGSGLPGIVRALDYLITSNRKGLGDA
                     VPDYDSGLYNAQGKDVVVIGGGDTAMDCVRTAVRQGANSVTCLYRRDRQNMPGSLREV
                     SNAEDEGVTFTWLSAPEAFLGDDKVTGVRAVKMHLGLPDASGRQSVEPIEGSSFTVKA
                     DLVIKALGFDPEDLPSAFNEPELKLTHWGTLKTHLRTFETVLPGVYAAGDIVRGASLV
                     VWAIRDGRDAAAAIHQQLSHAEHAVAAE"
BASE COUNT          337 a          614 c          521 g          301 t
ORIGIN      
        1 agccgaaatt caagatctca gtctcgacga tctggcggca acgctcctgc gcgccgagat
       61 cggtcttggg caggaacacc atgccgaccg cgatcggtcc ctcgcgcaga cggtcgccgc
      121 cccgcttcac ttctgccgcg aagaaatcct gcggaatttc gatatggatg ccggcaccat
      181 cgccggtctt accgtccgca tccacggcgc cgcgatgcca caacgcgccc agcgcctcga
      241 tgccggccat cacaacgtcg cggcgcttct tgccatccag agcggccacc aggccgacgc
      301 cgcacgcatc atgctccatc gccgggttat aagtctcgcg caggatttcg ctattcttct
      361 gccaggagct gaggaattga gcggcggttt cttgcgtcat cttgatcact ccaagatcga
      421 aatttgatga tacgccaccc tcgggtggca tgtatgttaa ttcgcggcgg tgcctgcgtc
      481 agcgcggcgc tgtgcctgcc cctcggccac gcggcgggcc aatgtaaacg ccaaggccag
      541 cgcgcaggca cccgtcacca ccgtaccgat gggaccgaga tgcaaggaag gcggcaccag
      601 ccagagcaca agccccacca ccacgatcac gagcacggca ggcggcagct caggctggtt
      661 tttgaagacc ggctgcacgc gcctattccg ctgccactgc gtgctcggca tggctcagct
      721 gctgatggat ggcagcagca gcgtcgcgcc catcacgaat ggcccatacc accagcgaag
      781 cgccacgcac aatgtcgccc gcggcataca cgcccggcag caccgtctcg aatgtacgca
      841 ggtgggtctt cagcgtgccc caatgggtca gcttcaactc cggctcgttg aaggcgctgg
      901 gcagatcctc agggtcgaag ccgagcgcct tgatgacgag atcggccttc accgtgaagg
      961 aggagccttc gatcggctcc accgattgcc ggcccgacgc atccggcagg ccgagatgca
     1021 tcttcaccgc gcgcacgccg gtcaccttgt cgtcacccag gaaggcttca ggtgctgaga
     1081 gccaggtgaa ggtcacgccc tcatcctcgg cattgctcac ctcgcgcaga gagcccggca
     1141 tgttctggcg gtcgcgccgg tacaggcagg tgacggaatt cgcaccctgg cgcacggcgg
     1201 tacgcacgca atccatggcg gtgtcgccgc cgccaatcac caccacatcc ttgccctggg
     1261 cattatacag tccggaatca taatccggca ccgcatcgcc caaccccttg cggttggagg
     1321 taatgagata atccagcgcg cggacaatac ccggcaggcc ggagccgggc ccgcccagct
     1381 cgcgggactt gtacacgccg gtcgccacca gcaccgcgtc atgcgcgttg cgcaaatcgg
     1441 cgaaggggat acggccacca atatcggcat tcagtacgaa tttgatgccg ccatcctcga
     1501 gccatttcca gcgccgcagc acgatctcct tctccagttt gaagccggga atgccatata
     1561 tcagcagccc gccgacgcgg tcatggcggt catacacggt cacctgatac ccttccgagc
     1621 gcagcgcctc ggcggcggca agcccggccg ggccggcgcc gataatgccg acgctctgat
     1681 ggcgctcctg caccgggcgg atgggcttca cccagccatt ctcgaaggcg gtatccgtga
     1741 tatagcgctc caccgcgccg atggtgacgg att
//
LOCUS       DASQCV010000488         1607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2262697, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000488 DASQCV010000000
VERSION     DASQCV010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2262697"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VEQ16_07425"
     CDS             complement(<1..198)
                     /locus_tag="VEQ16_07425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63702.1"
                     /translation="MIRLNALFHRRPEAILLLGGGVFLLLSWVIALGPALDFRAADAA
                     RPKSAADPAVERGRDLYLAEGC"
     gene            complement(195..>1607)
                     /locus_tag="VEQ16_07430"
     CDS             complement(195..>1607)
                     /locus_tag="VEQ16_07430"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HYP63703.1"
                     /translation="SPRPKWASRGAKRVAVSGAAEDRASQSVVYEYLAWAVAWLLIGS
                     FYGTLAAWKFVFPDLLPVEWLSFGRIRPIHTTSIFSGWLSLGLIGLAYLVVCQTSRRP
                     LYSPALARIALWLLNLALLAGLLTLSLGMTRGPVEYREWLTPVAAVFAAGVILNGINI
                     FLTLLRRRTEELYISNWFILGAFAWAPILYVIAYLPAFDSGMANVVIQAYFMHVVLGL
                     WFTLLVVGITYWSLPRLLRKPIYSYALGVLAFWANLIFYPLIGAHHFIFTPLPWWLQS
                     TAIALGVGMLIPVIATSANFLLTMRRSWRFIRHEPALWFIMAGALCYALASAQGTLQA
                     FRTANALLHFSNNTIGHAHFTAYGFVSLLMFGAISGQRLFAARSSAAPHVRLQFWLSL
                     GGLAIYVVAMTASGVLQGLSWAAERPFIDSVVASAPWYLLRAIGGSLMALSHLVFAWN
                     LWLMRPQQQLLPAAAAEPAQ"
BASE COUNT          341 a          485 c          584 g          197 t
ORIGIN      
        1 gcagccctcc gcgaggtaga ggtcgcggcc gcgctcgacc gcggggtccg ccgccgactt
       61 cggccgcgct gcatctgccg cgcggaagtc gagcgccggg ccgagggcga tcacccagga
      121 gagaagaagg aagaccccgc cgccgagcag gaggatcgcc tcgggccggc gatggaagag
      181 agcgttcagg cggatcattg cgccggctcc gccgccgctg cgggaagcag ctgctgttgc
      241 gggcgcatca gccagagatt ccaggcgaag acgagatggc tgagggccat caggctgccg
      301 ccgatcgccc tcagaagata ccagggggcg ctcgccacca cggagtcgat gaagggcctc
      361 tccgccgccc agctcagccc ctgcagcacc cccgatgccg tcatcgccac cacatagatc
      421 gcaagcccgc cgagcgacag ccagaactgc agcctgacat gcggcgcggc ggaactccgc
      481 gccgcgaaca ggcgctggcc agagatcgcg ccgaacatca ggagggagac gaagccatag
      541 gcggtgaaat gggcgtggcc gatggtgttg ttggagaaat gcagcagggc gttggcggtg
      601 cggaacgcct ggagcgttcc ctgggcggag gcgagcgcat agcagagcgc gccggccatg
      661 atgaaccaga gggcgggctc atggcggatg aagcgccagg atctccgcat ggtcaggagg
      721 aaattggcgc tggtggcgat gaccgggatg agcatgccga ccccgagagc gatcgccgtc
      781 gactgcagcc accagggcag tggcgtgaag atgaagtgat gcgcgccgat tagcgggtag
      841 aagatcagat tcgcccagaa ggcgagcacg ccaagcgcgt aggaatagat cggcttgcgc
      901 agcaggcgcg gcagcgacca gtaggtgatg cccacgacca gcagcgtgaa ccagagcccc
      961 agcaccacat gcatgaaata ggcctggatc acgacattgg ccatgccgct gtcgaaagcg
     1021 ggcagatagg cgatgacata gaggatcggc gcccaggcga aggcgccgag gatgaaccag
     1081 ttggagatgt agagctcctc ggtccgccgc cggagcaagg tgaggaagat gttgatcccg
     1141 ttcaggatca cgcccgcggc gaagacggct gcgaccggcg tcagccattc gcgatattcg
     1201 accggcccgc gtgtcatacc cagggaaagg gtgaggaggc cggcgagcaa agcgaggttc
     1261 aggagccaga gggcgatccg cgccagggcc ggggagtaga gagggcgcct ggatgtctgg
     1321 cagacgacga gataggcgag cccgatgagc ccgagggaga gccagccgga gaagatgctg
     1381 gtggtgtgga tcgggcggat gcgcccgaag gagagccact cgacgggcag caggtcgggg
     1441 aagacgaatt tccaggcggc cagcgtgccg tagaacgacc cgatcagcag ccaggccacc
     1501 gcccaggcca agtactcata gacgaccgac tggctcgccc gatcttccgc cgcgcctgac
     1561 accgccacgc gtttagcccc cctcgatgcc cattttgggc gaggcga
//
LOCUS       DASQCV010000489         2090 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2262728, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000489 DASQCV010000000
VERSION     DASQCV010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2262728"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1024)
                     /locus_tag="VEQ16_07435"
     CDS             complement(<1..1024)
                     /locus_tag="VEQ16_07435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HYP63704.1"
                     /translation="MKLRNSLMLSGIFLAGLAVGTIAQPLSRAMGDTTPADSTYQQLS
                     LFGDILTEVKQNYVIDPPSDKLIYNAVNGMLAGLDPHSSYMNAQQYADMQVQTSGEFG
                     GLGLEVTQTDGLLKVITPIDDTPGARAGIRPGDIIVKIDDLSTDSLTLDDAVSRMRGA
                     PGTKVTLTLKRSGISSPVIVTLTREKINIQDVKSKVLSSDAGPIGYIRLDSFDENAHQ
                     HILDAINKLQKQTNGPIHGYILDLRDNPGGLLDQAVAVSNEFLNSGEIVSTHGRHSAD
                     DQVWYAQPNGDLIHGAPIVVLTNSGTASAAEIVTAALQQNRRALVLGTKTFGKGSVQT
                     IMPIDNE"
     gene            complement(1088..>2090)
                     /locus_tag="VEQ16_07440"
     CDS             complement(1088..>2090)
                     /locus_tag="VEQ16_07440"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HYP63705.1"
                     /translation="PVAVRADPPDSGTAHAAALGADQAAAAASIRGLEDATAAAGTQL
                     ANLQAAQAQSQARLTQAEADLDRLLPLMRRLSSAPASTLLAAPLPPDGAVQGVALLRG
                     VAQSIADQARTVQTENAQLAELIAAAQASQQQLMAAATKQAAAEAEVEKQIQAAQAAE
                     MAAADTDAAKITARLQASRRLDTLNDAVNNLIPAAPKPASLTIGAGGAPVAGSIVQAF
                     GAPTAAGPATGISYGAAPGALVTSPCAGMVMFAAPFPSYGLMVIADCGHGDSVILAGM
                     SKLDVAQGEHLAHGQPVGTMQGFNPHDPAHQPRLYVELRQNGAPVDPAPWLNGGHSG"
BASE COUNT          311 a          613 c          762 g          404 t
ORIGIN      
        1 cttcattatc gatgggcatg atggtctgca ccgaaccctt gccgaaggtt ttcgtgccca
       61 gcaccagagc gcggcggttt tgctgcaggg cggcggtgac gatttccgcc gccgaggcgg
      121 tgccggaatt ggtgaggacg acaatgggcg cgccatggat cagatcgcca tttggctggg
      181 cgtaccacac ctggtcgtcc gcgctgtggc ggccatgggt ggagacgatt tcgccgctat
      241 tgagaaactc gttgctcacc gccacggcct ggtcgagcag gccgcccgga ttgtcgcgca
      301 gatcgaggat atagccgtgg atcgggccat ttgtctgctt ctgcagcttg ttgatggcgt
      361 ccaggatatg ctggtgggcg ttctcgtcga agctgtcgag ccggatatag ccaattggtc
      421 cggcatcgga gctgagaacc tttgatttaa catcctgaat gttaatcttt tcccgcgtca
      481 gcgtgacgat gaccggcgaa gaaatgccgc tgcgcttgag ggtgagcgtc accttggtgc
      541 cgggcgcgcc gcgcatgcgc gagacggcgt cgtccagggt caggctatcg gtggagaggt
      601 cgtcgatttt gacgatgatg tcgccgggcc ggatgccggc gcgggcgccg ggcgtgtcat
      661 cgatgggggt gatgactttc agcagcccgt cggtctgcgt cacttccagc ccgagtccgc
      721 cgaattcgcc ggaggtctgc acctgcatat cggcatattg ttgggcgttc atgtagctcg
      781 aatgcgggtc gagcccggcc agcatgccgt tgacggcatt atagatgagt ttgtcggacg
      841 gcggatcgat gacgtaattc tgcttcactt ccgtgagaat gtcgccgaac agggagagct
      901 gctggtaggt gctatcggcc ggcgtggtgt cgcccatggc ccgggagagc ggttgagcga
      961 tggtgcccac ggccaggccc gccaggaaaa ttccgcttag catcaaactg ttacgcagct
     1021 tcattacgcc gttcctttac gccggagcag gagtgctcca tctccattag acagcatcct
     1081 gcctcgatta tccagagtgc cccccattca accagggtgc cgggtccacg ggcgcgccgt
     1141 tttggcgcaa ttccacatag aggcgcggct gatgggcggg gtcgtgcggg ttgaagccct
     1201 gcatggtgcc tacgggctgg ccgtgggcca gatgttcgcc ctgggcgacg tcaagcttgc
     1261 tcatgccggc gaggatgacg ctgtcgccat ggccgcaatc ggcgatgacc atgaggccgt
     1321 aggagggaaa cggggcggcg aacatgacca tgccggcgca ggggctggtg accagcgcgc
     1381 cgggggcggc gccgtaggaa atgccggtgg cgggaccggc tgcggtgggg gcgccgaaag
     1441 cctgcacgat gctgcccgcg acaggcgcgc caccagcgcc gatggtgagg ctggctggct
     1501 tgggcgcggc ggggatcagg ttattcaccg cgtcattgag cgtatcgagc cgcctggagg
     1561 cctgcagccg ggcggtgatt ttggcggcgt ccgtgtctgc cgccgccatt tccgcggctt
     1621 gcgcggcctg gatctgcttc tccacctcgg cctcagcggc ggcctgtttg gtagcagcgg
     1681 ccataagctg ctgctggctc gcctgggcgg cagcgatgag ttccgcgagc tgggcgtttt
     1741 ccgtctgcac cgtgcgggcc tggtcagcga tggattgcgc cacgccgcgc agcagcgcca
     1801 cgccctggac cgcaccgtcg ggcggcagcg gcgcggccag caaagtggag gcgggggcgg
     1861 aggagaggcg gcgcatcaag ggtagcagcc ggtcgaggtc ggcttcggcc tgggtcaggc
     1921 gcgcttggga ttgcgcctgt gctgcctgca gattggcgag ctgtgtgccg gctgcggccg
     1981 tggcgtcttc cagcccgcgt atggaggccg ctgccgcggc ctggtccgcc ccgagcgcgg
     2041 ccgcgtgggc ggtgccgcta tcaggcgggt ctgcccggac cgcgacgggc
//
LOCUS       DASQCV010000490         2355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1930443, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000490 DASQCV010000000
VERSION     DASQCV010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1930443"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..552
                     /locus_tag="VEQ16_07445"
     CDS             <1..552
                     /locus_tag="VEQ16_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYP63706.1"
                     /translation="ALLPRVGRLVVDESFGDVQPAISLAPQAGRDGLIVLRSFGKFYG
                     LAGLRLGFAVGSATAISALAEMAGPWPVCGPALQIGAQALADSAWAEATRARLQGETT
                     RLDALAAQAGWRLAGGTGLFRLYETPAAEAAQAHLARAKIWSRIFPYSAQWLRLGLPG
                     SEAEWDRLEAVLNRISGIHAVQT"
     gene            536..1159
                     /gene="bluB"
                     /locus_tag="VEQ16_07450"
     CDS             536..1159
                     /gene="bluB"
                     /locus_tag="VEQ16_07450"
                     /EC_number="1.13.11.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016722 - oxidoreductase activity, acting
                     on metal ions [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0032363 - FMN catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5,6-dimethylbenzimidazole synthase"
                     /protein_id="HYP63707.1"
                     /translation="MQFKPETAEHLEALMLWRRDVRHFLPDPVPEAVLEKLRLAMDHA
                     PSVGNARPWRVIRVESTTLRAAVRENFARCNEAALALYEGEQAAAYARLKLAGLDTAP
                     VQLAIFTETDPEAGHRLGRATLPLTLQQSTAMAVYALWLTARAENLGVGIVSILEPKA
                     MEALFAVPPGWTFSAYLCIGTPVFTDDTPLLDRAGWQKNSGTIWETR"
     gene            complement(1163..>2355)
                     /locus_tag="VEQ16_07455"
     CDS             complement(1163..>2355)
                     /locus_tag="VEQ16_07455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HYP63708.1"
                     /translation="QGQRVATLRARDYAAYKPKLLAPVLESFARLAARHDLVIAEGAG
                     SPAEINLRDGDIANMGFARAANVPVVLAGDIDRGGVIAQLVGTQAVLAAADAALVRGF
                     IVNKFRGDPRLFDEGYQFIETRTLWRGFGVVPWFADAAYLPGEDAQDLRRARPVAAVA
                     GGAKIAVLVLSRIANFDDLDPLRAEPGVELCLVGEGEAIPGDAALVIIPGSKSTRGDL
                     AFLRAQGWDIDLLAHKRRGGMILGLCGGYQMLGREVADPDGIEGPPGTMPGLGLLDIS
                     TRMEGHKELGLVQAVHEESGLNVDGYEIHLGRSGGPDQARPFARIGGRPEGAVSADGK
                     VMGSYLHGLFGADAFRAAFLAKLGAPSATRHQADIEAALDGLADHLEAHLNIDGLLDV
                     ADAR"
BASE COUNT          405 a          901 c          674 g          375 t
ORIGIN      
        1 gccctgctgc cccgcgtggg caggctggtg gtggatgaaa gcttcggcga cgtgcagccc
       61 gccatctcct tggcgccgca ggctggacgc gacgggctca tcgtgctgcg ctccttcggc
      121 aaattctacg gcttggccgg cctccgcctc ggcttcgctg tgggcagcgc aacggccatt
      181 tctgccctgg ccgaaatggc tggcccctgg cccgtctgcg gcccggcttt gcagattggc
      241 gcccaggccc tggccgacag cgcctgggcc gaggccaccc gcgcccggct ccaaggcgag
      301 accacgcggc tggacgcgtt ggcagcgcaa gccggctggc gcctcgcggg cggcacgggc
      361 ctgttccgcc tctacgagac gccggccgcc gaggccgccc aggcgcatct ggcgcgcgca
      421 aaaatctggt cccgcatttt tccttattcc gcccagtggc tgcgccttgg cctgcccggc
      481 agcgaggccg aatgggaccg gcttgaagcc gtcctgaaca gaatcagtgg aatccatgca
      541 gttcaaacct gaaacggcgg aacatctcga ggcgctgatg ctctggcgcc gcgacgtccg
      601 gcattttctc cccgacccgg tgccagaggc ggtcctggaa aaactccgcc tcgccatgga
      661 ccacgccccc tcggtcggca atgcccgccc ctggcgggtc atccgcgtgg agagcaccac
      721 cctgcgtgcc gccgtgcgcg agaattttgc ccgctgcaac gaggccgccc tggcgcttta
      781 tgaaggcgag caggccgccg cctatgccag gctgaaactc gccgggctgg acaccgcccc
      841 ggtgcagctt gcgattttta ccgagacgga ccccgaggcc ggccacaggc tgggccgggc
      901 cacgttgccg ctcaccctgc agcaatccac cgccatggcc gtgtacgcgc tctggctcac
      961 cgcgcgggcg gagaatctcg gtgtcggcat cgtctccatc ctagagccca aggcgatgga
     1021 ggcgctcttc gccgtcccgc cgggctggac gttttccgcc tatctctgca tcggcacgcc
     1081 ggtcttcacc gacgacaccc ctctgctcga ccgcgccggc tggcagaaaa acagcggcac
     1141 gatctgggaa acgcgctgac ttttaacgcg cgtccgcgac gtccagcagc ccgtcaatgt
     1201 tcagatgcgc ctccagatgg tccgccagtc catccaaggc cgcctcgata tccgcctgat
     1261 ggcgcgtggc ggaaggcgcc ccaagcttcg ccagaaacgc agcgcggaac gcatccgcgc
     1321 cgaacagccc atgcagatag ctccccatca ctttgccatc cgctgaaacc gcaccctccg
     1381 gcctgccgcc aatcctggcg aatggccgcg cctggtccgg cccgccgctg cggccaaggt
     1441 gaatctcata cccgtccacg ttgagcccgc tttcctcatg caccgcctgc accagcccca
     1501 gctctttgtg cccctccatg cgggtggaga tatccagcag ccccagcccc ggcattgtcc
     1561 ccggaggccc ctcgatccca tccgggtccg ccacctcccg ccccagcatc tggtagccgc
     1621 cgcacaggcc cagaatcatg ccaccccgcc gcttatgcgc cagcagatca atgtcccagc
     1681 cctgcgcccg caaaaacgcg agatcgccac gcgtggattt gctgccggga atgatcacca
     1741 aagccgcatc gcccggaatc gcttcgcctt cgccgacaag acataattcc acgcccggct
     1801 cggcccgcag cggatcaaga tcatcgaaat tggcaatgcg cgagagcacc aaaacagcga
     1861 tttttgcgcc ccccgccact gccgccaccg ggcgcgcgcg gcgcagatct tgcgcatcct
     1921 cccccggcaa atacgctgca tccgcaaacc aaggcaccac gccaaacccg cgccatagcg
     1981 tgcgcgtctc gatgaattga taaccctcat caaacaaacg cggatcgccc cggaatttat
     2041 tcacgataaa cccccgcacc agcgctgcat ccgccgccgc cagcaccgcc tgcgtgccga
     2101 caagctgcgc aatcacccca ccccggtcga tatctccggc cagcaccacc ggcacattcg
     2161 ccgcgcgggc aaaccccata ttggcgatgt cgccgtcgcg cagattgatt tccgccggac
     2221 tgcccgcccc ctcggcaatg accagatcat gcctcgcggc gaggcgggca aaactctcca
     2281 gcacaggcgc tagaagtttc ggcttgtaag cggcatagtc ccgtgccctc agcgtcgcca
     2341 cgcgttgccc ctgca
//
LOCUS       DASQCV010000491         4225 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1601220, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000491 DASQCV010000000
VERSION     DASQCV010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4225
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1601220"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1853
                     /locus_tag="VEQ16_07460"
     CDS             <1..1853
                     /locus_tag="VEQ16_07460"
                     /inference="COORDINATES: protein motif:HMM:NF014896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HYP63709.1"
                     /translation="GGSKIFTALRPAGANTTKLYMRDGLAGTDKLLIDPDATATSGAH
                     NELDWWQASSDGSHVVFGISSGGSEESTLRIIETDSGTLLPESITRTNWANPSWLPDG
                     SGFFYNRLQDVPPQSLAYEEKSLCWLHRLNTDPATDVKLFGQGLDPAVSVRDIDAPNI
                     YATPGSLTAIGALQSGVQNELTLYASPLAALLAGSPAWRKICAPEDNVTAFALLGEDL
                     YLLTHAHAPHFRVVKTPAQKPDLAKAQEAVPQSEAVIRAIAAGRDGLYILDLNAGLSG
                     VRHLDANGHVTRLALPFSGAIDQEVFYADALHDGAWFPLESWVRPAVICQAVPGKVTQ
                     TDIAPPPPIDVSPYTSEEVFVTARDGTRVPLSIVHRKEQKHGAAPLLVEAYGAYGIAL
                     DPYFLARWLPFLDRGGVFAVAHVRGGGELGEDWHRAGQKETKYHTWQDTEDCVQHLIE
                     AGYGMHRTACVIGGSAGGITVGRLLTERPDLVAVVVSMVGVSDAMRSEFSPNGPPNIP
                     EFGSVKTEEGFHALLAMDAVQHVHDGVKYPSVLLTTGLHDPRVSPWEPAKMTARLQAA
                     TTSGNPVLLRVEADAGHGIGSTRAQRDEETADIMAFILWRTGDPRYQPPS"
     gene            1988..2062
                     /locus_tag="VEQ16_07465"
     tRNA            1988..2062
                     /locus_tag="VEQ16_07465"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2020..2022,aa:Val,seq:gac)
     gene            complement(2105..2749)
                     /locus_tag="VEQ16_07470"
     CDS             complement(2105..2749)
                     /locus_tag="VEQ16_07470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYP63710.1"
                     /translation="MRHEDIWRAIDTLAAEHGLSASGLARKAGLDPTSFNHSKRSAAD
                     GKLRWPSSESLAKILIATGARLEDFTALVSGARAMPEGRVKGRTKIPLIGLAQAGTEG
                     FFDDGGYPAGAGWDEVELPATADANAYALAISGESMEPVYRTGDKIIVSPAAPVRVGD
                     RVVARTQEGAVMAKELARRTAGRIELASLNPSFPVLRFTAGEVLWMHRIIWASQ"
     gene            2937..3170
                     /locus_tag="VEQ16_07475"
     CDS             2937..3170
                     /locus_tag="VEQ16_07475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63711.1"
                     /translation="MAFTLRNLSVLAYANGFTLWHYKAGNDNFVQAMGPGYFADAADL
                     LSEGDMVMLTGTEGGRIATIAGEGRKMALATLV"
     gene            complement(3361..>4225)
                     /locus_tag="VEQ16_07480"
     CDS             complement(3361..>4225)
                     /locus_tag="VEQ16_07480"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018307966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HYP63712.1"
                     /translation="LEKLGFGMLLSVSQGSAREPRMVVLQWHGVPDEEGKKGSKKLKE
                     PIAFIGKGVTFDTGGISLKPAAGMEDMKWDMAGAGAVVGAMAALAGRKAKVNAVGLVG
                     LVENMPSGSATRPGDVVKSYSGQTVEILNTDAEGRLVLADVLYYAQQRFEPKYMVDLA
                     TLTGAIITGLGHEYAGLFANDDELAAKLTAAGAAVDEPLWRMPLVKPGESYDKELNSP
                     IADVKNIGSRAGGSITAAQFLQRFVNGKPWAHLDIAGTAWAAKDSAVTPKGATGFGVR
                     LLDAFARGFEG"
BASE COUNT          752 a         1401 c         1255 g          817 t
ORIGIN      
        1 cgggcgggag caagatattc acagcacttc gtccggctgg cgccaacacc acgaaactct
       61 atatgcgcga cggcctggcc ggcactgaca agctgctcat cgaccccgac gccacggcca
      121 cgtccggcgc gcataacgag ctggattggt ggcaggcctc gtccgatggc agccatgtcg
      181 tgtttggcat ctcctcgggc ggctctgaag aatccactct gcgcattatc gaaacggata
      241 gtggcacgct gctgccggaa tccatcaccc gtaccaactg ggcgaacccg agctggctgc
      301 cagatggctc gggatttttc tataaccgtt tgcaggacgt gccgccgcaa agcctcgcct
      361 atgaggaaaa aagcctgtgc tggctgcacc ggctgaatac cgatcccgcg acggatgtga
      421 aacttttcgg ccaggggctt gatccggcgg tgagcgtgcg cgatatcgac gcgccgaaca
      481 tctatgccac gccgggctct ttaacggcga ttggtgcgct gcaatcgggc gtgcagaatg
      541 agctcaccct ctatgcttcg ccgctcgccg ccttgctcgc aggctcgccc gcctggcgga
      601 aaatctgcgc gccggaggat aatgtcactg ccttcgccct gctgggggag gatctctatc
      661 tcctcaccca cgcccacgcg ccgcatttcc gtgtcgtcaa aacccccgcg caaaagccgg
      721 accttgccaa ggcgcaggag gctgtgccgc agagcgaagc ggtcatccgc gccatcgcgg
      781 ccgggcgcga cgggctttat attctcgacc tcaatgccgg cctcagcggc gtgcgccatc
      841 ttgacgccaa tggccatgtc acgcgtctgg ccctgccttt ttccggcgcc atcgaccagg
      901 aggtgttcta tgccgatgcg ctgcatgacg gcgcctggtt cccactggaa tcctgggtgc
      961 gccctgccgt catctgccag gccgtgccgg gcaaggtgac gcagacggac attgctccgc
     1021 ccccgcccat cgacgtgtcg ccttacacat cggaagaagt tttcgtcacc gcgcgcgacg
     1081 gcacgcgcgt cccgctctcc atcgtccatc gcaaggagca aaaacatggc gccgcgccgc
     1141 ttttggtgga ggcctatggc gcctacggca tcgcgctcga tccctatttc ctcgcgcgct
     1201 ggctaccatt tctcgatcgt ggcggcgtgt tcgcggtggc gcatgtgcgc ggcggcggcg
     1261 agctgggcga ggattggcac cgcgccgggc agaaggaaac caaataccat acctggcagg
     1321 ataccgagga ttgcgtgcag cacctcatcg aggctggcta tggcatgcac cgcaccgctt
     1381 gcgtcattgg cggctcggcg ggtggcatca cggtgggacg gctgcttacc gaacggccgg
     1441 acctggtcgc cgtggtcgtc tccatggtcg gcgtgtcgga cgccatgcgc agcgaattct
     1501 cacccaacgg cccgcccaac atccctgaat ttggcagcgt gaaaacggag gaagggttcc
     1561 acgctttgct cgctatggat gccgtgcagc acgtgcatga cggcgtaaaa tatccctcgg
     1621 tgctgctcac caccgggctg cacgacccgc gcgtgtcgcc ctgggagccc gcgaagatga
     1681 cagcgcggct tcaagccgcc accacctccg gcaatcccgt gctattgcgt gtggaagcgg
     1741 atgcggggca cggcatcggc tccacccgcg cccagcgcga cgaggagacg gccgacatca
     1801 tggccttcat tctgtggcgg acgggcgatc cgcgctacca gccgccttcg taagaaggca
     1861 ccgtgccaac gcatggcaga gcggctccgg caccctttcc ggtcagcccc gcattttgtc
     1921 ccgtcttacg ttccgcccaa gctcttgcct cccggcgcca gtgccgctag taagccccga
     1981 aggatatggg cacatagctc agcggtagag catcaccttg acatggtggg ggtcacaggt
     2041 tcaatccctg ttgtgcccac catatcctcc ctttaaatca gtgggttagc tgaaagtgcc
     2101 ggcgttactg gctggcccag atgatgcgat gcatccacag cacctcgcct gccgtaaaac
     2161 gcagcacggg gaaactcgga ttgaggctgg ccagctcgat tcgcccggcc gtgcgccgtg
     2221 ccagctcctt ggccataaca gcgccctcct gggtgcgcgc caccacacgg tcccccaccc
     2281 gaaccggtgc ggcgggtgag acgatgatct tgtccccggt gcgatagacc ggctccatgg
     2341 attcgccgct aatggcgagc gcataggcat tggcatccgc cgtggcgggc aactccacct
     2401 catcccatcc ggccccggcc ggatagccgc catcatcgaa aaaaccttct gttcctgcct
     2461 gcgccaggcc gatgagcggg attttcgtcc gccccttcac ccgcccttcc ggcatggcgc
     2521 gcgcgccgct gaccagcgcg gtgaaatcct ccagccttgc ccctgtggcg ataagaattt
     2581 tcgccaggct ctcggaggag ggccagcgta atttgccatc cgcggcgctg cgcttggaat
     2641 ggttgaaact ggtcgggtcc agccccgcct tgcgcgccaa gccggacgcg gaaagcccat
     2701 gttcggccgc cagcgtgtcg atggcgcgcc agatatcctc gtgccgcatg caacaaacta
     2761 ccaatcttga atcttcagga gcttaccggt ttttgataag cggacaagag ggaaatagga
     2821 attttatcgt aaaattcccc ttaattcgct gtttagttct tgttttgttc tttttctagg
     2881 aatataagcc ttcgtgggat tgcaacttta ggttaattct aagaaggaag acatgtatgg
     2941 cgttcaccct ccgcaacctc tcggtcctcg cttatgccaa cgggttcaca ctgtggcact
     3001 acaaggccgg caacgataat ttcgtccagg ccatgggtcc cggctatttc gcggatgcgg
     3061 ccgatctgtt gagcgagggc gacatggtga tgctcaccgg cacggagggc gggcgcatcg
     3121 ccaccatcgc tggggagggg cgcaagatgg cgctggccac gctcgtctaa gagactgctt
     3181 cagaagtcgc tctggtgagt cggctagggg tgtttttcga gcaccggagc ggagcgtact
     3241 tcagtacgtg agcaccggcg cggagaaaaa cgcccctagc cgactcacca gagtagactt
     3301 atgaaacagt ctctaacatg tggccagcgc tgttgagcgc tgttccgggt ttgagggggc
     3361 ttacccctca aaccccctgg caaacgcatc cagcagccgc acaccgaagc ccgtggcgcc
     3421 tttcggcgtc acggctgaat ccttggccgc ccaggccgtc ccggcaatgt cgagatgcgc
     3481 ccagggcttg ccattgacga agcgctgcag gaattgcgcg gcggtgatgg agccgccggc
     3541 gcggctgccg atattcttca catccgcgat gggggagttc agctccttgt catagctctc
     3601 ccccggcttc accagcggca tgcgccagag cggctcgtcc acagcggcac cggccgctgt
     3661 cagtttcgct gccagctcgt catcattggc gaacagcccg gcatattcat ggccgagccc
     3721 cgtaatgatg gcgccggtca gtgtggcgag gtcgaccatg tatttcggct cgaaacgctg
     3781 ctgcgcgtaa tagagcacat cggccagcac cagccgcccc tcggcgtccg tattgaggat
     3841 ttccaccgtc tggccggaat aggatttcac cacatccccc ggccgtgtgg cgctgccgga
     3901 aggcatgttt tccaccagcc ccaccagccc cacggcattc accttcgcct tgcggccggc
     3961 cagtgccgcc atggcgccca ccacggcacc ggcgccggcc atgtcccatt tcatgtcctc
     4021 catgccggcg gcaggcttca gcgagatccc gcccgtgtcg aacgtgacgc ccttgccgat
     4081 gaaggcgatg ggctctttga gcttcttgct ccccttcttg ccctcctcgt ccggcacgcc
     4141 atgccattgc agcaccacca tacgcggctc gcgcgcggac ccctggctca ccgaaagcag
     4201 catgccgaag ccgagtttct ccagg
//
LOCUS       DASQCV010000492         1629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3257260, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000492 DASQCV010000000
VERSION     DASQCV010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3257260"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(91..1551)
                     /locus_tag="VEQ16_07485"
     CDS             complement(91..1551)
                     /locus_tag="VEQ16_07485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HYP63713.1"
                     /translation="MLWGLVLLFALEGCEVGPDFHTPGTPDAALATPQQGGTSAQNFN
                     VGADIEGDWWALFQNKALDQMVSTALTNNPSLTAAQETLVQAEETLRAAGGMLAPTVS
                     FGANVEREKLSAAQLASFGNTAGQSESIPPFTLYGTNFSISYDLDIWGESRRYIEQQA
                     AQADYQRDELEAAYLSLTGNIVTEAVQAASLRGQIDATNSIIAAETQLLQILQSQQGL
                     GGASGAQVLQQQAQLAQSQATLPPLQAALAQTQNQLTAYQGALPGGAAPPAVTLDDFT
                     LPQNVPVSLPSAIVAQRPDIRAAEAQLHAASANVGVVTAQMLPQITLTGQVGHSALTT
                     GTLFTPQSVLWNVAAGLTQPIFEGGQLEANRKGAIAAWRGSVAQYQNVVVTSFQSVAD
                     ALAALQYDADELTEATAAREAAEQSLQVTTAQFQLGGQPLTAVLTAQTTYQDAALAEV
                     KAKAARLSDTAALYVALGGGWWHRKDVREQCCGVIP"
BASE COUNT          278 a          578 c          481 g          292 t
ORIGIN      
        1 agccgaacac cagcccgaac agcacgccca tggacaagag catgatcacc atgcgccgga
       61 tcagcctctg tctgtccatc tcactcttcc ttaaggaatc acgccacagc attgttccct
      121 cacatcctta cggtgccacc agccgccgcc cagcgccaca taaagcgccg ccgtgtcgga
      181 gagccgcgcc gccttcgcct tcacttcggc gagggcagca tcctggtaag tggtctgtgc
      241 cgtcaacacc gcggtcaacg gctggccgcc cagctggaat tgcgcggttg tcacttgcag
      301 gctctgttcc gccgcctcgc gcgccgcggt cgcctcggtc agttcgtcgg catcatattg
      361 cagggcggcc aaagcatcgg ccacgctctg gaaggacgtc accaccacat tctggtactg
      421 cgccacgctg ccccgccacg cggcgatcgc ccccttgcgg ttggcttcca gctgcccgcc
      481 ctcgaaaatc ggctgggtca acccggcggc gacgttccac agcacactct gcggcgtgaa
      541 caaggtgccg gtggtgaggg cggaatgccc cacctggccg gtcagcgtga tctgcggcaa
      601 catttgcgcc gtcaccaccc ccacattggc cgaggccgca tgcagctgcg cctccgcggc
      661 gcgaatatcc ggccgctgcg cgacgatagc ggaaggcagg cttaccggca cattctgcgg
      721 caatgtaaaa tcatccagcg tgacggcggg cggtgccgcc ccgcccggca gcgcgccctg
      781 ataggcggtc agctggttct gcgtctgcgc cagcgccgcc tgcagcggcg gcagcgtcgc
      841 ctgcgactgc gccagctgcg cctgctgctg cagcacctgc gcgccggaag ccccgcccag
      901 cccctgctgt gattgcaata tctgcagcag ctgcgtttca gcggcgatga tgctgttggt
      961 ggcgtcgatc tggccgcgca gcgaggccgc ctgcaccgcc tcggtcacga tattgccggt
     1021 gagcgacaga taggccgcct ccagctcgtc gcgttgataa tcggcctgcg ccgcctgctg
     1081 ctcgatatag cgccgagatt cgccccatat atcgaggtca taggagatgg agaaattggt
     1141 gccgtacagc gtaaaaggtg gaatcgactc ggactggccg gccgtattgc cgaatgacgc
     1201 gagctgcgcc gcagagagtt tctcccgctc cacattggcg ccgaacgaga ccgtcggcgc
     1261 cagcatcccg ccggccgcgc gcagcgtttc ctccgcctgc accaaggtct cctgcgccgc
     1321 ggtcaggctc ggattattgg taagcgccgt ggacaccatc tggtcgagcg ccttgttctg
     1381 gaacaaggcc caccaatcgc cctcgatatc cgcgcccaca ttgaaattct gcgcgcttgt
     1441 gccaccttgc tgcggcgtgg ccagcgcggc atccggcgtc cctggcgtat gaaaatcggg
     1501 ccccacctcg cagccttcca gcgcaaagag cagcaccaac ccccacagca ttcggaaacc
     1561 cgttggtttc atgccttttg gctaccgggc tttccgccct gcgtcaagca cacaatgatg
     1621 acgcatttg
//
LOCUS       DASQCV010000493         1514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2594793, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000493 DASQCV010000000
VERSION     DASQCV010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2594793"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..401
                     /locus_tag="VEQ16_07490"
     CDS             <1..401
                     /locus_tag="VEQ16_07490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63714.1"
                     /translation="LKRFGTGPAAGALPAIYVAGFAVLAITTSLAGIMVFQVVQRWMN
                     FALANPARQVFFTVVDREEKYKAKNLIDVVIYRGSDALYGWVFNGLQALGLKLGAIAL
                     CALPVVAGWLVLSAALGRTQERRAAAADCR"
     gene            615..>1514
                     /locus_tag="VEQ16_07495"
     CDS             615..>1514
                     /locus_tag="VEQ16_07495"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP63715.1"
                     /translation="MRDRGFLVYFLTSAVAMMADSVEHVISYWVVFQKFHSPALGGYA
                     MVSHWLPMLLFGVTAGALADRYDSRRLVQLGMVLFMACSLAWGILFLTDALQAWHSAV
                     ILTIHGFASVFWGPPGQVLLYDIVGRKLLPSAVRLNATSRYLGLLAGPAVGAAFLLAL
                     GPTLGILVNALLYLPLVLFLWRAPYGPRYQPNRPPARPVRGFYDVLSTVDAIRGKNVI
                     VSMILLSGGAAMLISHAYQPQMPSFAQDLGYGAAGLFYGMLLAADAGGALVAGVLLEG
                     TGLLPPRPRTAFVLVILWCGALAG"
BASE COUNT          206 a          474 c          486 g          348 t
ORIGIN      
        1 tgctcaagcg gttcggcacc gggccggcag ccggtgcact gccggcgatt tacgtcgcgg
       61 gtttcgcggt actcgcgatc acgacaagcc tcgccgggat catggtgttc caggtggtgc
      121 agcgctggat gaactttgcg ctcgccaatc cggcgcgcca ggttttcttc acggtggtcg
      181 atcgcgagga gaaatataag gcaaagaatt tgatcgacgt cgtgatctat cgaggctccg
      241 atgcgctgta cggctgggtt ttcaacggtc tacaggcgct gggactgaag ctaggcgcaa
      301 tcgcgctgtg cgcgctgccg gtggtggccg gatggctcgt cctctcagcg gcgttgggac
      361 ggacacagga acgtcgcgcc gccgctgcgg actgccgatg agccgcgcaa tcgacgtcgg
      421 ccactctgcg attcatgcaa ttgcgcatgg caggtaatcc aacgcttgtt cgtctttgag
      481 ccccgtgaca aatcgggtcg tcctgcgccc gcctcactgc gggcacttcc cccgaaacca
      541 ttgtgaccag ctccgaaact aaaattcccg caggctcctc cgccgccgat atttctccgc
      601 gctcgtttgc cgccatgcgc gatcgcggtt ttttggttta tttcctcact tcggcggtgg
      661 cgatgatggc tgacagcgtt gagcacgtga tcagctattg ggtggtgttt cagaaattcc
      721 actcgccggc cctgggcggc tacgccatgg tttcgcactg gctcccgatg ctcttgtttg
      781 gcgtgactgc gggggcgctt gcggatcgct acgatagccg gcgcctggtg cagctgggca
      841 tggtcctgtt catggcatgc tcgctcgcct ggggcatatt gttcctcacg gacgcactgc
      901 aggcctggca ctccgctgtc atcctcacga tccatgggtt cgccagcgtg ttctggggcc
      961 caccgggtca ggtcctgctt tatgacattg tggggcgcaa gctgttgccg agcgcggtcc
     1021 ggctcaacgc gacctcacgc tatctggggc tgctggcggg ccctgcggtc ggggcggcat
     1081 ttctgctggc tctcgggccc acgttgggta ttctcgtcaa tgcgctgctt tacctgccgc
     1141 tcgttctgtt cctgtggcgg gcgccctacg ggccgcgata tcagccgaat cgccccccgg
     1201 cgcggccggt gcgcggcttc tacgatgtgt tgagcaccgt cgacgctatt cgcggcaaaa
     1261 acgtcatcgt ctcgatgatc ctgctgtctg gcggcgccgc catgctgatc agccatgcct
     1321 atcagccgca gatgccgagc tttgcgcagg acctcggcta cggcgcggcc ggcctctttt
     1381 acggcatgct gctcgctgcc gacgccggcg gtgctctcgt cgccggggtc cttctcgaag
     1441 gcactggttt gctgccgccg cgtccgcgta cggctttcgt gctggtgatt ctctggtgcg
     1501 gagcgcttgc gggt
//
LOCUS       DASQCV010000494         6641 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1435677, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000494 DASQCV010000000
VERSION     DASQCV010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6641
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1435677"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..757
                     /gene="proC"
                     /locus_tag="VEQ16_07500"
     CDS             <1..757
                     /gene="proC"
                     /locus_tag="VEQ16_07500"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004735 - pyrroline-5-carboxylate
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HYP63716.1"
                     /translation="ALLAGWREQGLSQAVVVDPSPEAAKLAGPGVIVVRTPGEIPDGF
                     TPGAVVLAVKPQMAAEALPAYARYEGSAVFISIMAGKTVHAIAQLIGRQAPIVRAMPN
                     TPAAVRQGITVAHACHHVSAHQRALADALLAAAGQVAWVEDESQLDPVTAISGGGPAY
                     VFLLTELMEQAGLDQGLPPELARQLARQTVIGSAALLAASDEEPAQLRINVTSPGGTT
                     AEALKLLRADDALPKIFREAIQAATERSRVLSA"
     gene            906..1838
                     /locus_tag="VEQ16_07505"
     CDS             906..1838
                     /locus_tag="VEQ16_07505"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011633014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HYP63717.1"
                     /translation="MKIVACNSNRPLAEAVAAGLNLPLAKASIRRFADMEVFVEIQEN
                     VRGEDVFVVQSTSYPTNDNLMELLITCDALRRSSARRITPVIPYFGYARQDRKSGPRT
                     PISAKLVANLITEAGANRVLTMDLHAGQIQGFFDIPVDNLYAAPLFSRDIEERFADRD
                     PMVVSPDVGGVLRARTIARRLNTDLAIIDKRRERAGVSEVMNIIGEVEGRDCILVDDI
                     VDSGGTLCNAAEALLANGAKSVEVYVSHGVLSGGAVARIAASPIGMMTITDSIMATEA
                     VRLAHNIRQLSIAPLLAEAMRRISTESSVSSLFD"
     gene            1854..2471
                     /locus_tag="VEQ16_07510"
     CDS             1854..2471
                     /locus_tag="VEQ16_07510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019462815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HYP63718.1"
                     /translation="MKLFYSPDSCALAIHIILEEIGKPYELALVNLRAGEQYKLPYIA
                     LNPKSKVPALQRDDGTLLTELPAIAWYLARSTPAAGLLPDGSEGEVRLLELVDYMVST
                     VHMRGFTRIFRPGVFTPTTADEPAVQQTGKDLVKDGLKLLAQALGAKAYLLGDYTIAD
                     VVLFYLEDWAVRRAGLDLPEALAGHRARMRERPAVQRALAAEGLP"
     gene            2468..3022
                     /locus_tag="VEQ16_07515"
     CDS             2468..3022
                     /locus_tag="VEQ16_07515"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HYP63719.1"
                     /translation="MSLPDVPFWFLRHGETDYNAAGLSQGALDISLNATGRAQAEEAG
                     PLLAGQGISAIISSPMQRTRETTSIVNEFLGLPVIYEPDLREVIFGGMEGMPLLPWFP
                     DWLEGRYTPPNAESFPEVLARVEATMARVLTRPGPLLIVAHGGIFRAIRDLMGLPKQG
                     LTPNAIPLYCAPTETGWEVTGGMG"
     gene            complement(3277..3672)
                     /locus_tag="VEQ16_07520"
     CDS             complement(3277..3672)
                     /locus_tag="VEQ16_07520"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYP63720.1"
                     /translation="MSVNPYLHFAGNCAEALAFYETALGAKVNRRMTHAEAPMPSNPE
                     WADKIMHADFSILGSQLMAADTPPEHYQKPAGFRVTLNLSDPDTAQAWFEALSTGGHI
                     DMPLQKTFWAAAFGMVTDRFNIPWMVNCT"
     gene            complement(3724..4524)
                     /locus_tag="VEQ16_07525"
     CDS             complement(3724..4524)
                     /locus_tag="VEQ16_07525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HYP63721.1"
                     /translation="MKLTIATWNINSLRLRQAHLHALATALAPDIICLQETKVPDELF
                     PEAVGAALNMPFMLKRGMKSYNGVAIISRLPLTLAEDTPDWCGKTDCRHISANVQAGS
                     TPFTLHNFYVPAGGDIPDRAANPKFGHKLDFLAETRAHFTAYPPARAVLVGDLNIAPL
                     EQDVWSHKQLLDVVSHTPIEVERLNGWMAAGWYDAMRHFVPADQKLYTWWSYRNRDWA
                     ASDRGRRLDHVWVTPDLKAGLEACQVLRQARDWDQPSDHVPVAVTLEV"
     gene            complement(4613..5239)
                     /locus_tag="VEQ16_07530"
     CDS             complement(4613..5239)
                     /locus_tag="VEQ16_07530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA];
                     GO_process: GO:0044874 - lipoprotein localization to outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein carrier protein LolA"
                     /protein_id="HYP63722.1"
                     /translation="MPRRHFLLGAAALLMLPATVRAAQLTTDDQALIARINAYLNSQS
                     AITAKFLQVSDDGTTRTGKAWMQRPGQMRFEYDPPDPQLLVSGGFALVYHDPALNQTT
                     NIPLSSTPLGILLAQHVSLDSDATEITNITRQPGEYDVTLIRRGKPSLGSLTLVFGAN
                     PIELRQWVVTDAQGRQTRVSLYDITPTGRLPDSLFQYSLSVPTSHRGG"
     gene            complement(5244..5615)
                     /locus_tag="VEQ16_07535"
     CDS             complement(5244..5615)
                     /locus_tag="VEQ16_07535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HYP63723.1"
                     /translation="MAAAPLSSDQLVGILRDTVVALVRRDGVDLSARQLGVFLTCYLN
                     DGAHTVRGLAQELNVSKPAITRALDRLSELDYVRRKVDPSDRRSVLVQRTVKGAAFLR
                     ETRHIMTDALSNNKAETASRR"
     gene            complement(5954..>6641)
                     /locus_tag="VEQ16_07540"
     CDS             complement(5954..>6641)
                     /locus_tag="VEQ16_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012812304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="leucyl aminopeptidase family protein"
                     /protein_id="HYP63724.1"
                     /translation="PSSAMLRMKKDMGGAAIVLGLGHAIMSLNLPVKLQIRIGCVENS
                     ISGNAMRPSDILQTRSGLTVELGNTDAEGRLVLCDLLAEACSDNPDWLIDVATLTGAA
                     RAALGPDLPALFCTDEAMASALLHAGEAMHDPLWRLPLFGAYDSWLDSNVADMNNVSS
                     KPFAGAIIAALFLRRFVSKKVSWAHIDTYAWNDASRPGRPEGGEAQTLRALLAAVEVF
                     SAERQRNAPL"
BASE COUNT         1288 a         2016 c         2044 g         1293 t
ORIGIN      
        1 cgccttgctc gccggctggc gcgagcaagg gctcagccaa gccgttgtcg tcgacccctc
       61 gccggaggcc gccaagctgg ccgggcccgg tgtcattgtc gtgcgcacgc cgggcgagat
      121 tccggatggt tttacccccg gcgctgtcgt actggcggtg aagccgcaaa tggccgccga
      181 ggcactgccc gcctatgcgc gttatgaggg cagcgccgtt ttcatctcca tcatggccgg
      241 taagactgtc cacgccatcg cgcagctgat tgggcgccag gcgcccatcg tgcgggccat
      301 gcccaacacc ccggccgccg tgcgtcaggg cattaccgtc gcccatgcct gccatcacgt
      361 ctccgcacac cagcgcgcct tggccgatgc gctgctggcc gcggcgggtc aggtggcgtg
      421 ggtggaagat gagagccaac tcgaccccgt taccgccatt tccggcggag gtccggctta
      481 tgtgttcctg ctcaccgagc tgatggagca ggccgggctc gaccaggggc tgcccccgga
      541 gctggcccgc cagcttgcac gccagaccgt gatcggctcc gccgccctgc tggccgcctc
      601 ggacgaggag ccggcgcagc tgcgtattaa tgtaacatcg ccaggcggta ccacggccga
      661 ggcgctcaaa ctgttgcgcg ccgatgacgc tctgcctaaa attttccgcg aagccatcca
      721 ggctgcgacc gaacgctccc gcgtgctctc ggcttgattt acagcgccac cccccgttgc
      781 taaaccgccc ctgcctgggg ctctctcaaa cgtgcggatg cgctgagaaa gccccaggtt
      841 tcagttttgg cgtgccctct gtccgcatgg gcgggaaggg ggcttaaaac cgggaagccc
      901 cacgcatgaa gattgtcgcc tgcaacagca accgccccct ggccgaagct gtcgctgccg
      961 gtttgaacct gcccttggcg aaagcctcca tccgccgctt cgccgacatg gaggtgtttg
     1021 tggaaatcca ggagaatgtg cgcggtgagg acgtgttcgt cgtgcagagc acctcctacc
     1081 cgactaacga caatctcatg gaactgctga tcacctgcga cgcgctgcgc cgcagctcgg
     1141 cccggcgcat cacgccggtc atcccctatt tcggctatgc ccgccaggac cgcaaatccg
     1201 gcccgcgtac gcccatttcc gccaagctgg tggccaatct catcaccgag gccggcgcca
     1261 accgtgtgct gaccatggat ctgcacgcag gccagatcca gggttttttc gatattcctg
     1321 tcgataatct ctacgccgcc ccgctgtttt cgcgcgacat agaggagcgt tttgccgatc
     1381 gcgacccgat ggtcgtctct ccggatgttg gtggcgtgct gcgcgcccgc accatcgccc
     1441 gacgcctgaa caccgatctc gccatcatcg ataagcgccg cgaacgcgct ggcgtgtccg
     1501 aggtgatgaa catcatcggc gaggtggaag ggcgcgattg catcctggtc gatgacatcg
     1561 tcgattccgg cggcacgctc tgcaacgccg cagaggcgct gttggccaat ggcgccaagt
     1621 cggtggaagt ttatgtctcg catggcgtgc tctccggcgg cgccgtggcg cgcatcgccg
     1681 cctcgcccat cggcatgatg acaatcacgg actccattat ggccactgag gccgtgcgcc
     1741 tcgcgcataa tatccgccag ctctccatcg cccccttgct ggccgaggcc atgcgccgca
     1801 tctctacgga aagttcagtc agctcactct tcgactagga taaggcaagg cgcatgaaac
     1861 tcttctattc accagatagc tgcgctctcg ccatccacat catcctcgaa gagatcggca
     1921 agccctacga gctggcactg gtcaatctgc gcgccggcga gcagtacaag ctgccctaca
     1981 tcgccctcaa ccccaagtcc aaggtgccgg ctctgcagcg cgacgatggg acgctgctga
     2041 ccgaattgcc cgccatcgcc tggtatctgg cgcgctccac ccccgccgcc gggctgctgc
     2101 cggatggcag cgagggcgag gtacggctgc tggaattggt ggattacatg gtgtcgaccg
     2161 tgcatatgcg cggctttacc cgcatctttc gcccaggcgt cttcaccccc accaccgccg
     2221 acgaaccggc tgtgcagcag acaggcaagg atctggtgaa ggacggactg aagctgctcg
     2281 cgcaggcgct gggcgccaaa gcctatctgc taggcgacta cactattgcc gacgtggtgc
     2341 tcttttatct tgaggactgg gccgtccgcc gcgccgggct ggatctgcca gaggccctcg
     2401 ccggccatcg cgcccgcatg cgcgaacgcc ccgccgtgca gcgcgctttg gcggccgaag
     2461 gactcccttg agtctcccgg acgtcccatt ctggttccta cgccatggcg agactgacta
     2521 taacgccgcc gggctgagcc agggggcgct ggatatctcg ctgaacgcca caggccgcgc
     2581 ccaggccgag gaggccgggc cgctgctggc agggcagggg atcagcgcca ttatctcctc
     2641 gcccatgcaa cgcacgcgtg agaccaccag cattgtcaat gagtttcttg gcctgcccgt
     2701 gatctacgag ccggatctgc gcgaggttat tttcgggggc atggagggca tgcccctgct
     2761 gccctggttc ccggactggc tggagggccg ctacacgcca cccaacgcgg agagcttccc
     2821 cgaggtttta gctcgcgtcg aagccactat ggcgcgcgtc ctcactcgcc caggccctct
     2881 ccttattgtc gcccatggtg gcatcttccg cgcgatacgc gacctcatgg ggctgcccaa
     2941 acaaggcctt acccccaacg ccatccccct atattgcgct cccaccgaaa ctggctggga
     3001 agtcacgggg ggcatgggtt aggctaacgc gcgcaatgta accagggaca aagccccttg
     3061 ccgcaggcac atgttttgaa cctgatctgc ctcgtcgcaa actcagccgg taacagcggc
     3121 aatggccata ccggccacga aggcgagggc gaggatagtg gtggaaggca tcgagaactt
     3181 catgacacaa ctcctgcccg cccatatggg ccgtttggag ccatgtttca ctagcgcatt
     3241 tggtgacgga gccatgtcat ctttgcgcag caaagcttac gtacaattaa ccatccaggg
     3301 aatgttgaaa cgatcggtga ccatgccgaa ggcggcggcc cagaaggttt tctgcagtgg
     3361 catgtcgata tggccacctg tggagagggc ttcgaaccaa gcctgggcag tgtccgggtc
     3421 ggagaggtta agggtcacgc ggaagccggc gggcttttga taatgctcag gcggggtgtc
     3481 ggcggccata agctgtgagc caagaatgct gaaatcggcg tgcatgatct tgtcggccca
     3541 ttccgggttg ctaggcatgg gagcctcggc atgggtcatg cgcctattca ccttggcgcc
     3601 gagagcggtt tcgtagaagg ccagcgcttc ggcgcaattg ccggcgaagt gcaaatacgg
     3661 attgacggac atgcggcatt tcctcctggc gccgctttag cacgcgcgaa ggggaggctt
     3721 gcgttaaact tccaaggtga cagcgacggg cacatgatcg gagggctggt cccaatcgcg
     3781 tgcctggcgg agcacctggc aggcttccag cccagctttc aggtcgggtg taacccagac
     3841 atggtcgagc cggcggccgc ggtccgaggc cgcccagtcg cggttgcggt aggaccacca
     3901 agtatagagt ttctggtcag ccggcacgaa atggcgcatg gcatcgtacc agccggctgc
     3961 catccagcca ttcagcctct ccacctctat tggggtgtgg ctgacgacat cgagcagctg
     4021 cttgtggctc cagacatcct gttccagagg tgcaatgttc aggtcgccca ccagcacggc
     4081 gcgggcaggg ggataggcgg tgaaatgggc gcgggtttcc gccaggaaat caagcttatg
     4141 cccgaatttg gggttcgctg cgcggtcggg aatatcgccg ccggcaggaa cataaaaatt
     4201 atgcaaggtg aagggcgtgc tgccggcttg cacattggcg gaaatatgtc ggcaatcagt
     4261 cttgccgcac cagtcgggcg tgtcttcggc caaagtgagt ggcaggcgcg agatgatggc
     4321 gacaccgtta tagcttttca tgccgcgctt gagcatgaag ggcatgttca gcgcggcgcc
     4381 gacagcttcg gggaataact catccggcac cttggtttcc tgcaggcaga tgatgtccgg
     4441 tgccagtgcc gtggcgagcg cgtgcagatg cgcctggcgc agacgcagcg aatttatatt
     4501 ccaggtggct atagtcagct tcatggcacg tgtctaacgc aacagcagac cgaatgaaat
     4561 catgcggccc gatagagttg attgcgcaac aatgggtaga atgtgcaaaa actcaaccgc
     4621 cacgatggga ggttggcaca ctcagtgaat attggaacaa ggaatctggg agccggccgg
     4681 taggtgtgat gtcgtacagg ctcactcttg tctgccgtcc ttgcgcatcc gtgaccaccc
     4741 attgccgcag ttcgatcggg ttggcaccga acaccagggt gaggctaccc agggatggct
     4801 tgccacgacg tataagcgtg acgtcatatt cgccgggttg gcgggtgatg tttgtgattt
     4861 cagtcgcgtc ggaatcaagg ctgacatgtt gcgccagcag aatgccgagc ggcgtgctgg
     4921 agagcggaat attggtggtc tggttgaggg cagggtcgtg atagaccagc gcgaaaccgc
     4981 cggagacgag caattgcggg tcgggcggat catattcaaa ccgcatctgt ccggggcgct
     5041 gcatccaggc cttaccggtg cgggtcgtgc cgtcgtcgct cacctgcagg aatttggcgg
     5101 taatggcgct ttggctgttc agataggcgt tgatcctggc gatcagcgcc tggtcgtccg
     5161 tggtaagctg tgctgcccgc actgtggcgg gcagcatcag caaggctgcc gcgcccagca
     5221 aaaaatgccg gcgcggcaag gggttaacgg cggctggcgg tctcagcttt gttattggag
     5281 agggcatcgg tcataatatg gcgcgtttca cgcaaaaacg cagccccctt gaccgtgcgc
     5341 tgcaccagga cggagcggcg gtcggacggg tcgaccttgc ggcggacgta gtccagctct
     5401 gacagacggt cgagcgcacg ggtaatggcc ggcttggaaa cgttcagctc ctgggccagg
     5461 ccgcgcaccg tgtgggcgcc gtcattgaga taacaggtga gaaacacgcc gagctggcgc
     5521 gcggagagat ctacgccgtc ccggcgcacc agagcgacga ccgtgtcgcg aagaatccca
     5581 accagctggt cggaggaaag tggcgctgct gccatggttt tatccttgag gtagaaaaca
     5641 aaaatagatt cagaacggag acattcacgt tccgtgtgtg ttcagtatac attctgactg
     5701 cgcatttcca atagatgatc cagcgcgcat gtgattcgga ttgtcggaaa cattaacaga
     5761 tggtcaaaaa taccgatgct gcgaaccgaa gggggcacgg cagggctgca aatcccttgc
     5821 cagtgtaaaa ctttaaattt taccgattgg taaaaagccg agttttttca gcgtttgact
     5881 ggaagtttcc tatttaatga tacagcatgg tgcaacgaaa ctgcattgcg atgccgttct
     5941 gtctgtattg cgattaaagc ggagcattac gctgccgttc agccgaaaaa acctctacgg
     6001 cggcgagcaa ggcacgcaat gtttgcgctt cgccgccctc gggcctgccg ggacgactcg
     6061 cgtcattcca cgcatatgta tcgatatgtg cccaagaaac cttttttgaa acaaagcgtc
     6121 tcaagaatag agccgcaata atagcgccgg cgaacggttt tgacgagaca ttgttcatgt
     6181 ccgcaacatt actgtctagc cagctgtcat aggcgccgaa cagcggtagc cgccagagcg
     6241 gatcgtgcat cgcctctccc gcgtgcagaa gggcggaggc catcgcttca tccgtgcaga
     6301 acaaggctgg cagatccggc cccagggctg cgcgcgcggc gcctgtcagc gtcgcgacgt
     6361 cgatcaacca atctggattg tcactgcagg cttcggcaag aagatcgcag agcaccagcc
     6421 gaccttccgc atccgtgttg cccagctcca cagtcaaacc ggaacgggtt tgcaatatat
     6481 ccgatggccg catggcattg ccggaaatcg aattttcgac acagccgatg cgaatttgca
     6541 atttcacagg cagattcaag gacatgatcg catggcccaa gccgagcacg atggctgcgc
     6601 cgcccatgtc cttcttcatg cgcagcatcg ccgaactcgg c
//
LOCUS       DASQCV010000495         1534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_271731, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000495 DASQCV010000000
VERSION     DASQCV010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271731"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..194
                     /locus_tag="VEQ16_07545"
     CDS             <1..194
                     /locus_tag="VEQ16_07545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63725.1"
                     /translation="VIGNYGGSTIMIIDIKDVTPGKARAAIHAHDYMLLWGGPVNQAL
                     RALEKCKNPPKPATPAPGG"
     gene            263..490
                     /locus_tag="VEQ16_07550"
     CDS             263..490
                     /locus_tag="VEQ16_07550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63726.1"
                     /translation="MDATAIFLSILVGLTALLGIGALVGLLVSAWFILLPLILLAMTL
                     AFADSGFLVQAVIAGVLLAAVTWTEYRVWRG"
     gene            593..877
                     /locus_tag="VEQ16_07555"
     CDS             593..877
                     /locus_tag="VEQ16_07555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63727.1"
                     /translation="MSRVEAGAAVLALLALLAAGCSNQPPDPSYCGVAETGYKNSLAD
                     VNQRLGQYSACLGRSTGGADCAADFSALRSAQSNLETSASDVAKYCKAKP"
     gene            893..1534
                     /locus_tag="VEQ16_07560"
     CDS             893..1534
                     /locus_tag="VEQ16_07560"
                     /inference="COORDINATES: protein motif:HMM:NF016144.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrpB family protein"
                     /protein_id="HYP63728.1"
                     /translation="MPDATARAVKPASGRRPKPKTAEAKPAKERYVGGIIKVSDYDPA
                     WPRMFAEESAKLRAVLGRLVVEIEHIGSTAVPGLPAKPVIDLLVGVGSLEQARARCIK
                     PLQALGYNYIPEYEAFLPGGLFFRRMSSAGVGHHLHVMEPANPRWKRLVVFRDHLRAH
                     PRAARAYGDLKRALAARCRDDIAAYRTAKHDFVEKATEKGLAARRRRAGPLTA"
BASE COUNT          250 a          514 c          502 g          268 t
ORIGIN      
        1 cggtcatcgg caattacggc ggctcgacca tcatgatcat cgacatcaag gatgtgacgc
       61 ccggcaaggc gcgggctgcg atccacgccc atgactacat gctcctctgg ggcgggccgg
      121 tgaaccaggc tctgagggcc ctcgagaaat gcaagaaccc gccgaagccg gcgacgcccg
      181 cgcccggcgg atagggcgct ggtctcgaac ggggcattct cgcggcgcgg gcctggcact
      241 atactgggcg cagggggaac cgatggacgc cactgccatt ttcctttcca tcctcgtcgg
      301 gctgacggcg ctgctcggca tcggcgcgct ggtcgggctt ctggtctcag cctggttcat
      361 cctcctgccg ctcatcctgc tggccatgac cctcgccttt gccgatagcg ggtttctggt
      421 ccaggcggtg atcgccggcg tcctgctcgc cgccgtcacc tggaccgaat accgcgtctg
      481 gcgtggttga caccgcttct ccaccttcgt cgattcgcca tttctgtcac atgagctccg
      541 gctccgaccg tggtaacgag cccggcatgt ccaaggagca gggaatcggt tcatgagcag
      601 ggtggaggct ggtgcggcgg ttctggcatt gctggcgctt ctggcggcgg gctgcagcaa
      661 tcagccgccc gacccctcct attgtggagt cgctgagacg ggctacaaaa actcgctggc
      721 ggatgtgaac cagcgcctcg ggcagtattc ggcctgcctc ggccggagca cgggcggcgc
      781 cgattgcgcg gccgatttct cagccctgcg ttccgcgcaa tccaaccttg aaacatccgc
      841 gagtgacgtt gcgaagtatt gcaaggccaa gccgtgaacc tatctgccaa tcatgcctga
      901 cgcgacggca agagcggtca agccggcgtc cggccggcgg ccgaagccga aaacggcgga
      961 ggcgaaaccg gcgaaggagc gctatgtcgg cggcatcatc aaggtctccg actatgaccc
     1021 cgcctggccc cgcatgttcg ccgaggaaag cgcgaagctg cgcgccgtcc tcggccgtct
     1081 cgtggtcgag atcgagcata tcggaagcac cgcggttccc ggcctgcccg ccaagccggt
     1141 catcgacctg ctggtgggcg tcggcagcct ggagcaggcg cgggctcgct gcatcaagcc
     1201 gctccaggcg ctggggtaca actacatccc cgaatacgag gccttcctgc cgggcgggct
     1261 gttcttccgt cggatgagca gcgcgggcgt cggccaccac ctccatgtca tggagccggc
     1321 caatccccgc tggaagcgtc tcgtcgtgtt ccgcgaccat ctgcgcgccc atcccagagc
     1381 cgcccgggcc tatggcgatc tgaagcgcgc tctggcggcg cgatgccgtg acgacatcgc
     1441 cgcctatcgc accgccaagc atgatttcgt cgagaaggcg acggagaagg gattggcggc
     1501 gcgtcggcgc cgcgcaggac ctcttacggc gtaa
//
LOCUS       DASQCV010000496         1744 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3257651, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000496 DASQCV010000000
VERSION     DASQCV010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1744
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3257651"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..655
                     /gene="folE"
                     /locus_tag="VEQ16_07565"
     CDS             53..655
                     /gene="folE"
                     /locus_tag="VEQ16_07565"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HYP63729.1"
                     /translation="MQDPVKPSRAEAEAAIRVLLSWAGDDPAREGLRDTPSRVARAYK
                     EFFKGYAEDPEALLARTFEETEGYDEMVVLRDIRIESHCEHHMVPIIGRAHVAYLPGT
                     RVVGISKLARVVDAYCRRFQIQEKLTAQIANTIQDVLQPRGVAVVIEAGHQCMSTRGV
                     HKPGASMVTSRMLGEFRDNPSTRREFLAMISPRTCSALES"
     gene            952..>1744
                     /locus_tag="VEQ16_07570"
     CDS             952..>1744
                     /locus_tag="VEQ16_07570"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HYP63730.1"
                     /translation="MPPQTAASPQNRRLVAIWLFTLAFMIWVMVGIGGYTRDSGSGLS
                     IMDWAPIVGAIPPLSTAAWNSVFAKYQTISQYKLLHQGMDLAGFKQLFWPEYIHRLWG
                     RLMGLVLLLPLIAFAFTGRIEKRLIPWLVLLFILGGLQGAIGWFMVSSGFFPNSTAVE
                     PWRLSLHFFAAMFLLGAVLWTALSVQSPEPARYPGAKNLRRLALAAFILLLLAMFGGT
                     FVSGVHGIDAFDPAKNIGTGQPPAGWPMTGIFTDTATIVFDHQFLA"
BASE COUNT          287 a          610 c          513 g          334 t
ORIGIN      
        1 tcacacccct gccgcgaagc tcgccaaatc cggccgtggc gccaagaaaa cggtgcagga
       61 cccggttaag ccgagccgcg cggaagccga ggctgccatc cgcgtgctgc taagctgggc
      121 cggcgacgac ccggcgcgcg aggggctgcg cgatacaccg tcgcgcgttg cccgcgccta
      181 taaggaattc ttcaagggct atgcggaaga ccccgaggcc ctgctggccc gcaccttcga
      241 agaaaccgaa ggctatgacg agatggtcgt gctgcgcgac attcgcatcg agagccattg
      301 cgagcatcac atggtgccca tcatcggccg tgcgcatgtg gcctatctgc cgggcacgcg
      361 cgttgtcggc atttccaagc tggcccgcgt ggtggacgcc tattgccgcc gcttccagat
      421 ccaggagaag ctgacggcgc aaatcgccaa caccatccag gacgtgctgc agccgcgcgg
      481 cgtcgccgtg gtgatcgagg cggggcatca gtgtatgtcc acgcgcggcg tgcataagcc
      541 aggcgcctcg atggtgacga gccgcatgct gggcgaattc cgcgacaacc cgtccacgcg
      601 ccgggaattc ctggcgatga tctcgccgcg cacgtgcagc gcgctggagt cctgacgggc
      661 gctttgggaa gtaaggccag ggggctctgc cccctggacc cccgctgggc ctgaggccca
      721 gaccccatta gcttttaagg tttgaaatgg ggcctgccac caagccgcga cacggcaagg
      781 aggcaggccc cttttcaaac cttcttaaaa agttacgggg gtctggggcc tcaggcccca
      841 gcgggtccag ggcagagccc tggccttatc ttttcaaatc agccccgtaa gacacccact
      901 ggcctgcccg gccttgacgc ggtatcccgc gcggcggaac aggagccctg aatgccgcca
      961 caaaccgccg ccagcccgca aaatcgccgc ctcgtcgcca tttggctgtt cacccttgcc
     1021 ttcatgatct gggtcatggt cggcatcggc ggctatacgc gcgacagtgg ctccggcctc
     1081 tccatcatgg actgggcccc catcgtcggc gccatcccgc cgctctccac cgccgcctgg
     1141 aacagcgtct tcgccaagta ccagaccatc tcgcaatata agctgttgca ccagggcatg
     1201 gacctggccg gtttcaagca gcttttctgg ccggaatata ttcaccgcct ctggggccgg
     1261 ctgatggggc ttgtgctgct cctgccgctc atcgccttcg cctttaccgg ccgcatcgag
     1321 aaacgcctta tcccctggct tgtgctgctt ttcatcctcg gcgggctgca gggcgccatt
     1381 ggctggttca tggtcagctc cggtttcttc cccaacagca ccgccgttga gccctggcgc
     1441 ctctcgctgc atttcttcgc cgccatgttc ctgctcggcg cggtgctgtg gacggcgctc
     1501 tccgtgcaat cccccgaacc cgcccgctac cccggagcaa aaaatctgcg ccgccttgct
     1561 ctggctgcgt ttattctgct tctgttggcc atgttcggcg gtaccttcgt ttccggcgtc
     1621 catggcatcg acgctttcga ccccgcgaaa aacattggca ccggccagcc ccccgctggc
     1681 tggccgatga ccggcatttt caccgacacc gccaccatcg ttttcgacca ccagttcctg
     1741 gccg
//
LOCUS       DASQCV010000497         2786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2098011, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000497 DASQCV010000000
VERSION     DASQCV010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2098011"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..723
                     /locus_tag="VEQ16_07575"
     CDS             <1..723
                     /locus_tag="VEQ16_07575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HYP63731.1"
                     /translation="HVEGGDSTGLSSPLRVRLSQGGIRLAQILTRTSVSDPMSGFFLL
                     RQELFEQLAGRLTGQGFKILLDLVLASPKRLNVAEIPYQFRPRAAGESKLDVLVLAQF
                     AGLLIDKILGGVVPLRFISFALVGGFGVLVNLLVLQAARAAGLDFTTAQTLGTIVAMI
                     ANFQLNNQLTYRTQRLKGAKAWRGLVLFLLVCSLGAYANIGIARALYAENGHSLLAGA
                     AGAAVGVVWNYAVSATLVWRVR"
     gene            723..2138
                     /locus_tag="VEQ16_07580"
     CDS             723..2138
                     /locus_tag="VEQ16_07580"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HYP63732.1"
                     /translation="MVEALALRRWALAALLALTLLRLTLAAILPLTPDESYYFLWAQH
                     LQPGYYDHPPMVALWIKAGTLLAGNNALGTRLLGPLSAALGSVLLWDMAERLAPGRGL
                     TAALLLNATLMIGVGAIIITPDTPLLFFWIAGAAICVRLIEDDRPLWWLALGLAAGGM
                     LLSKYTALLFIVAVFLWLLTSKDGRWRLATPWPWAATVLALAVFAPNIAWNAAHGWIS
                     YVKQGGRETHFDPGRAAQYFAELMVGQAFLATPFIAGLAVAGLWHVRRDTAPGPRLLL
                     WLSLVPGAVMLAHVLSGRVQGNWVVILYPSTCVAAALLPAPMLQRWRRIALGVGFGVT
                     ALAYIQALAAPIQLPARLDTAGDQLAGWRALAEDAMAGHPAFVTTDDYATMAVLAVQG
                     PPGVKVVGFYADWLPRWGFFGYPPAVTPGEVGVLITRHTDSPCAQQLGTVTRHRGAKI
                     FATYRLCSFKAPDSGVLLPRP"
     gene            2228..>2786
                     /locus_tag="VEQ16_07585"
     CDS             2228..>2786
                     /locus_tag="VEQ16_07585"
                     /inference="COORDINATES: protein motif:HMM:NF022995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019825 - oxygen binding [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protoglobin domain-containing protein"
                     /protein_id="HYP63733.1"
                     /translation="MSNLKNLNDRLNFLQINPQVQNRLRGIKSVAMGALPAALDAFYA
                     QMRAVPDVAKFFSGEDMIQHAKAKQHAHWDLIIDGRFDDAYMESVSNAGEVHARIRLE
                     PRWFIDGYAIVLEHLLRAAVAARWPQPRFGKKRGIAEKQLAEEVSALAKATFLDMDMT
                     ISVYIEAWERHWTESEVKIKRSAGQV"
BASE COUNT          428 a          882 c          914 g          562 t
ORIGIN      
        1 catgtggagg gcggggattc caccggcctc tcctcgccgc tgcgggtacg gctgtcccag
       61 ggcggcatca ggctcgcgca gattttaacg cgcaccagcg tgtccgaccc aatgagcggt
      121 ttttttctcc tccggcagga gctgttcgag cagctcgcgg ggcggttgac gggtcagggc
      181 ttcaagattc tgctcgacct cgttctcgct tcgcccaagc ggctcaatgt cgcggaaatc
      241 ccctatcaat tccgtccccg cgcggcgggc gagagcaagc tcgatgtgct ggtgctggcg
      301 caatttgccg ggctgctcat cgacaagatt ctgggcggcg tggtgccgct gcgcttcatc
      361 tccttcgccc tggtgggcgg tttcggcgtg ctggtgaatc tgctggtgct gcaagcagcg
      421 cgcgcggcgg ggctcgattt caccacggcg cagaccttgg gcaccatcgt ggccatgatc
      481 gcgaacttcc agctcaacaa ccagctgacc tacaggaccc agcggttgaa gggggcaaaa
      541 gcctggcgcg ggctggtgct gttcctgctg gtctgcagcc ttggcgccta tgccaatatc
      601 ggcattgccc gcgcgcttta tgccgagaat gggcacagcc tgcttgcggg cgcggccggt
      661 gctgcggtgg gcgtggtgtg gaattacgcc gtttccgcca cattggtctg gcgcgtgcgc
      721 tgatggtcga agccttggcg ctaaggcgct gggcactggc ggcattgctg gcgctcaccc
      781 tcctgcggct gaccctggcc gccatcctgc cgcttacgcc ggacgaatcc tattatttcc
      841 tctgggcgca gcatttgcag cccggttatt acgaccatcc gcccatggtg gcgctatgga
      901 tcaaagccgg cacgctgctc gccgggaata atgccctcgg cacacgcctg ctcggcccgc
      961 tttcggcggc actgggctcg gtgctgctgt gggacatggc agagcgcctg gcgccgggcc
     1021 gcgggctgac cgccgcgctg ctgctcaatg ccacgctgat gatcggcgtc ggcgccatca
     1081 tcatcacgcc cgatacgcct ttgttgttct tctggatcgc tggggcggcc atctgcgtgc
     1141 ggctcatcga ggatgaccgc ccgctctggt ggctggcgct ggggctggcg gcggggggca
     1201 tgctgctctc aaaatatacc gccctgctct tcatcgtggc cgtattcctc tggctcctca
     1261 ccagcaagga cgggcgctgg cgcctggcga cgccctggcc atgggcggcc acggtcctgg
     1321 cgctggcggt atttgcgccc aacatcgcct ggaacgcggc gcatggctgg atcagctatg
     1381 tcaagcaggg cgggcgcgag acgcatttcg accccggccg cgcagcgcag tatttcgccg
     1441 agctgatggt gggacaagct ttcctggcca ccccgttcat tgccgggctg gccgttgcgg
     1501 ggctttggca tgtgcggcgc gacacggcgc cgggcccgcg gctgctgctc tggctcagcc
     1561 tggtgcctgg ggcggttatg ctggcgcatg tgctgtccgg ccgggtgcag ggcaactggg
     1621 tcgtcattct ctaccccagc acctgcgttg ccgcggctct gctgcccgca ccaatgctgc
     1681 aacgctggcg ccggatagcg ctgggggtgg ggttcggtgt caccgccctc gcttatatcc
     1741 aggctctggc cgcccccatt caactgcccg cgcggctgga cacggccggc gaccaactgg
     1801 ccggctggcg cgctttggca gaggatgcca tggccggcca ccccgccttc gtcaccacag
     1861 atgactacgc caccatggca gtgctggccg tgcagggccc gccaggcgtg aaagtggtgg
     1921 ggttctatgc tgactggctg ccgcgctggg gattttttgg ctatcccccc gctgtaacgc
     1981 ccggcgaggt gggggtgctg atcacccgtc ataccgattc accttgcgcg cagcagctcg
     2041 gcacggttac gcgccatcgc ggcgccaaga ttttcgccac ctaccggctc tgcagcttca
     2101 aggcgccgga ttcgggcgtg ttgttgcccc gcccctaacg tccgcaaaat tccacgcgac
     2161 tttaagcccg gcttaaacaa tcggcttcaa acagatgcgg catagtgtcc aacccaggtg
     2221 gagccgcatg tcgaacctga agaatctcaa tgatcgcctg aatttcttgc agatcaaccc
     2281 acaggtgcaa aaccgcctgc gcggcatcaa gtccgttgcc atgggcgcgc ttcccgcggc
     2341 gctggacgca ttttatgcgc aaatgcgggc tgtccctgat gtggcgaaat tcttctccgg
     2401 tgaggatatg atccagcatg ccaaggccaa gcagcatgcg cattgggatt tgatcatcga
     2461 tggccggttc gacgacgcct atatggaatc tgtcagcaat gcgggtgagg tccacgccag
     2521 gattcggctg gagccgcgct ggtttattga cggttacgcg atcgtgctgg agcatctgct
     2581 gcgtgcggcg gtggcggcgc gttggccgca gccgcgcttc ggcaagaaac gtggcatcgc
     2641 cgagaaacag ctggccgaag aggtatcggc actggcgaag gcaaccttcc tggatatgga
     2701 catgacgatt tccgtctata tcgaggcctg ggaacggcac tggaccgaat cggaagtaaa
     2761 gatcaagcgc agcgccggcc aagtgg
//
LOCUS       DASQCV010000498         1882 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1104706, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000498 DASQCV010000000
VERSION     DASQCV010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1104706"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VEQ16_07590"
     CDS             <1..286
                     /locus_tag="VEQ16_07590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007003292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SufD family Fe-S cluster assembly protein"
                     /protein_id="HYP63734.1"
                     /translation="QTNRNLLLSPGARVDTRPRLEILADDVKCSHGATVGDLDETAAF
                     YLQSRGIPPQEARRMLIEAFAAEIVEEADLPAPLRATLQETLSTWAALLP"
     gene            283..1524
                     /locus_tag="VEQ16_07595"
     CDS             283..1524
                     /locus_tag="VEQ16_07595"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009540643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HYP63735.1"
                     /translation="MTALRALPLAAGFDPREIKAQFPVFSRHPGLVYLDTAASAQKPD
                     VVIEGIAEFYRSEYANVHRGAYHLSMRATERFEQARETVRRFLNAAATEEIIFVRGAT
                     EAINLVANSWGMGLQPGDEILITGLEHHANIVPWQMLRDRLGIRLELVPVTDEGGLDM
                     AAFAQRLTPRTRLVACTHVANVTGHVTPVAEIVRLAHAAGALVLLDGCQAAPRLAVDV
                     RALDCDFYVFSGHKCYGPTGIGVLYGRQALLAAMPPWQGGGDMIRTVTHAQTSYQDAP
                     FRFEAGTPDIAGAVGLDIALCFMMELGLPVIEAHEQELTDYALAALSRTRGVRLSPGG
                     GCQLGAISFTVDVIHPHDLATIFDQLKIALRAGQHCAQPLMERLGVTATARLSFGVYN
                     TAEDVDALISAIARAQKLFGV"
     gene            1528..>1882
                     /locus_tag="VEQ16_07600"
     CDS             1528..>1882
                     /locus_tag="VEQ16_07600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004271478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HYP63736.1"
                     /translation="MDLRELYQDIILDHGRHPRHFHALPTPSHFAHGHNPLCGDKVTV
                     YLNLKDGIVTDASFEGAGCAISVASASLMTDIVKGKPLEDARMLFANFHASVTGGSPP
                     NLPETLAEDAERLHPL"
BASE COUNT          313 a          694 c          539 g          336 t
ORIGIN      
        1 gcaaaccaac cgcaacctcc tgctctcccc gggggcacgg gtggacacgc gcccgcgcct
       61 ggaaattctc gctgacgatg tgaaatgcag ccatggcgct acagtgggcg atctcgacga
      121 gaccgccgcc ttctatctgc aatcgcgcgg catcccgccc caggaagcac ggcgcatgct
      181 catcgaagcc ttcgccgcgg aaatcgtcga ggaggccgat ctgccggccc ccctgcgcgc
      241 cacgctgcag gaaacgctca gcacctgggc ggcgctgctg ccatgaccgc cctgcgtgcc
      301 ctgccgcttg ccgccggttt tgacccacgg gagatcaagg cgcaattccc cgtcttctcc
      361 cgccaccccg gcctcgtcta tctcgacacc gccgcctccg cgcaaaagcc ggatgtggtg
      421 atcgagggca tcgccgaatt ctaccgcagc gaatatgcca atgtgcatcg cggcgcctat
      481 catctcagca tgcgcgccac cgagcgcttc gagcaggcgc gcgaaaccgt gcgccgcttt
      541 ctcaacgccg ccgccacgga ggaaatcatc ttcgtgcgcg gcgcgacgga ggcgatcaac
      601 ctcgtcgcca atagctgggg catggggctg caaccgggcg atgagattct catcaccggc
      661 ctcgagcatc acgccaacat cgtgccctgg cagatgctgc gcgaccgcct cggcatccgc
      721 cttgaactcg tgccggtcac ggatgaaggc gggctcgata tggcagcctt tgcccaacgc
      781 ctcacgccgc gcacccggct tgtcgcctgc acccatgtcg ccaacgtcac cggccatgtc
      841 accccggtgg ccgagatcgt gcgcctcgcc catgcggccg gcgcgctcgt gctgcttgac
      901 ggctgccagg ccgccccgcg cctggccgtg gacgtgcgcg cgctggattg cgatttctac
      961 gttttctccg gccataaatg ctacggcccc accggtatcg gcgtgctcta cggccgccaa
     1021 gcgctgctcg ccgccatgcc gccctggcag ggcggcggcg acatgattcg caccgtgacc
     1081 cacgcccaaa ccagttatca ggacgccccc ttccgtttcg aggccggcac cccggacatc
     1141 gccggtgcgg tgggtctgga catcgcgctg tgcttcatga tggagctcgg cctacccgtc
     1201 atcgaggcgc atgagcagga gctgaccgat tatgcgctgg ctgccctcag ccgcacgcgc
     1261 ggtgtgcgtc tctcccccgg cggcggctgc cagctcggcg ccatctcctt cacggtcgat
     1321 gtcatccacc cgcatgacct tgccaccatc tttgatcagc tgaagatcgc gctgcgcgcc
     1381 gggcagcatt gtgcccagcc gctcatggaa cggctgggcg tgaccgctac cgcccgcctc
     1441 tcctttggcg tctacaacac ggcggaagat gtcgatgcgc tcatttccgc tatcgccagg
     1501 gcgcagaagc tgttcggagt ctgagccatg gatcttcgcg aattatacca ggacatcatt
     1561 ctcgaccatg gccgccaccc gcgccatttc cacgcgctcc ccacccccag tcatttcgca
     1621 catggtcata acccgctctg cggcgataag gtgaccgtct atctcaacct caaggacggc
     1681 atcgtcaccg atgccagttt cgaaggtgct ggctgcgcca tctcggttgc ctccgcttcg
     1741 ctcatgacgg acattgttaa aggaaaaccc ctcgaagacg cccgtatgct cttcgccaat
     1801 ttccacgcca gcgtcacggg cggctcgccc cccaacctgc cagagactct ggccgaggat
     1861 gccgaacggc tgcacccgct ga
//
LOCUS       DASQCV010000499         2532 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_938867, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000499 DASQCV010000000
VERSION     DASQCV010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2532
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_938867"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            18..1295
                     /gene="glyA"
                     /locus_tag="VEQ16_07605"
     CDS             18..1295
                     /gene="glyA"
                     /locus_tag="VEQ16_07605"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019089217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HYP63737.1"
                     /translation="MERPLAAVDPAIAELLRQEAEREATGLELIPSENLVSEAVLEAM
                     GSVFTNKYAEGYPGKRYYGGCQYADKVEQLTIDRAKELFGAEHANVQAHSGTQANVSV
                     YMSALQPGDTVLGMNLSHGGHLTHGHPLNFSGRMYKFVAYGVRQDTEQIDYDEIDRLA
                     AEHKPKMIVAGPSAYSRVIDFARMAETARSVGALFFVDMAHIAGLVAAGVHSSPVPHA
                     DFVSTTTHKTLRGPRGGMVLTRAAFQKELDKLTFPGLQGGPLVHTIAAKAVCLKEAME
                     PSFKEYQQQVARNAKALAAAVAKLGFRVVSGGTDNHLFLIEVHSRGISGSDAEKALDR
                     SGLTVNKNAIPFDPLPPMKAGGIRLGTPSVTTRGMKEPEMELIAGWIAEVLAKPGDGE
                     IERRVRRQVADLAARFPIYLARAGGGRAEAQSG"
     gene            1401..>2532
                     /locus_tag="VEQ16_07610"
     CDS             1401..>2532
                     /locus_tag="VEQ16_07610"
                     /inference="COORDINATES: protein motif:HMM:NF021523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2252 family protein"
                     /protein_id="HYP63738.1"
                     /translation="MKEEKNKRSIPKKLPTVVAASGEYEGWVAKQLEIVAGDLALKHR
                     RMAEAVFPFMRATFYRWAQLWPLVCPELARAPFVMVVGDLHVENFGTWRDAEGRLVWG
                     VNDFDEAWPASYTVDLVRLLASAYLAVADQHLTVTRREARDAIESGYRDGISKGGSPF
                     VLAEKNNWLRKVALSRLRDPVLFWEKIEACKEFRGTLPKPIHELLHGSMPLQQPTLEM
                     KSRIAGLGSLGHPRVLGLTKWHGAHIVREAKKLTRSAWIWARGEADKDRAPLQQENII
                     NRAVRIPDPHIHFLDGWVVRRLGPDCCHIELSALPEEHDEGRLLYAMGWETANIHLGT
                     REKIAALKKDLSGRKGRWLHKAAKAMAQATAKDWKVWRTHQGP"
BASE COUNT          499 a          749 c          884 g          400 t
ORIGIN      
        1 cggaagcgaa cgagaggatg gagaggccgc tggcggcggt cgatcccgcc attgccgaac
       61 tgctgcgcca agaagccgag cgcgaggcca ccggcctcga gctgattccg agcgagaacc
      121 tggtttcgga agcggtgctg gaggccatgg gttcggtttt caccaacaag tacgcggagg
      181 gctatccggg gaagaggtat tacggcggtt gccagtatgc cgacaaagtg gagcagctga
      241 cgatcgaccg cgccaaggaa ctctttggcg cggagcacgc caacgtgcag gcgcattccg
      301 gaacacaggc caatgtcagc gtgtatatga gcgcgctgca gccgggcgac acggtgctgg
      361 gcatgaatct gtcgcatggc gggcatctga cgcacgggca tccgctcaat ttttccggcc
      421 gcatgtacaa atttgtggcc tacggggtgc gccaggacac cgagcagatt gactacgacg
      481 aaatcgaccg gctggcggcc gagcacaagc cgaagatgat tgtggccgga cccagcgcct
      541 attcacgggt gattgatttt gctcggatgg ctgagaccgc acggagcgtg ggcgcactct
      601 ttttcgtgga catggcgcac attgccggtc tggtggcggc aggggtgcat tcgagccccg
      661 ttccgcatgc cgattttgtg agcaccacca cgcacaagac gctgcgcggg ccgcgcggcg
      721 ggatggtgct gacgagagcg gcgttccaga aagagctgga caagctgacc ttccccgggc
      781 tgcagggcgg tccgctggtg cataccatcg cggccaaagc ggtgtgcctc aaagaggcca
      841 tggagccttc gtttaaagag taccagcagc aggtggccag gaatgccaag gcccttgccg
      901 cggccgtggc caagctgggc ttccgggtgg tttcgggcgg aactgacaac cacctgttcc
      961 tgatcgaggt gcattcccgc gggatttccg gcagcgacgc cgaaaaggcc ctggaccgct
     1021 cgggactcac cgtgaacaag aacgccattc cgttcgatcc gctgccgccg atgaaggccg
     1081 gaggaatccg cctgggcacg ccttcggtga ccacccgcgg gatgaaagag ccggagatgg
     1141 agctgatcgc gggctggatc gccgaggtgc tggccaagcc gggcgacggg gaaatcgaac
     1201 gaagagtgcg ccggcaggtg gctgacctgg cggccaggtt cccgatttac ctggcgcgcg
     1261 ccgggggcgg gcgggcggag gcgcagtccg ggtaaccctc acgcccttcg agccccgccg
     1321 ggaagccgcc atttgcgggc gcattcagca acaaaaaata aatagccgtt tgccgggccg
     1381 cacggagagc gactgctcca atgaaagaag agaaaaacaa gcgttccatc ccgaaaaagc
     1441 tgcccacggt tgtcgccgca agcggggagt acgaaggatg ggtggccaaa cagctggaga
     1501 tcgtcgcggg cgatctggcc ctgaaacacc ggcgcatggc ggaggcggtg tttccgttca
     1561 tgcgggccac gttttaccgc tgggcgcagc tctggccgct ggtctgcccg gagctggcgc
     1621 gcgcgccgtt tgtgatggtg gtgggcgatc tgcatgtgga gaatttcggc acctggcggg
     1681 acgcggaagg ccggctggtg tggggcgtga acgattttga cgaagcctgg ccagcgtcct
     1741 atacggtgga cctggtgcgg ctgctcgcca gcgcctatct ggcggttgcc gaccagcatc
     1801 tgacggttac ccggcgcgaa gcgcgggatg cgattgagag cggttatcgc gacggcatct
     1861 ccaagggcgg ctcgcccttc gtgctggcgg aaaaaaacaa ctggctgcgc aaagtggctt
     1921 tgagcaggct gcgcgacccg gtgctcttct gggagaagat cgaggcctgc aaggagttcc
     1981 gcggcacgct gcccaagccc attcacgagc tgttgcacgg ctccatgccc ctgcagcagc
     2041 cgacgctcga gatgaaatcg cgcatcgccg gactgggcag tctcgggcac ccgcgggtgc
     2101 tggggctgac caagtggcac ggcgcgcaca tcgtgcgaga agccaagaag ctgacccggt
     2161 cggcctggat ctgggcgcgc ggagaagccg acaaagaccg cgccccgctg cagcaggaga
     2221 acatcatcaa ccgcgcagtg cgcattccgg acccgcacat acactttctc gatggctggg
     2281 tggtgcggcg cctcgggccg gattgctgcc acatcgagct gagcgcgctg ccggaagaac
     2341 acgacgaggg gcggctgctc tatgccatgg gatgggagac cgccaatatt cacctgggaa
     2401 cgcgcgaaaa gatagccgcg ctcaagaagg acctctccgg acgcaagggc cgctggctgc
     2461 acaaggcggc caaggccatg gcccaggcaa ccgccaagga ctggaaagtc tggcggacac
     2521 accagggacc cc
//
LOCUS       DASQCV010000500         3202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2927838, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000500 DASQCV010000000
VERSION     DASQCV010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3202
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2927838"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..417
                     /gene="ispF"
                     /locus_tag="VEQ16_07615"
     CDS             <1..417
                     /gene="ispF"
                     /locus_tag="VEQ16_07615"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010501048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HYP63739.1"
                     /translation="VKIPFEKGLAGHSDADVGIHALCDAIYGALAEGDIGRHFPPTEN
                     TWKDADSARFLRHAAERIAARGGRLANADITIICERPKIKPHAAAMQARLAELLGVSE
                     GRISVKATTTEQLGFTGRGEGIAAQAAVVVLVPDKD"
     gene            complement(873..1230)
                     /gene="ssrA"
                     /locus_tag="VEQ16_07620"
     tmRNA           complement(873..1230)
                     /gene="ssrA"
                     /locus_tag="VEQ16_07620"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01849"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="alphaproteobacterial-type; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01849"
     gene            1237..2151
                     /gene="thyX"
                     /locus_tag="VEQ16_07625"
     CDS             1237..2151
                     /gene="thyX"
                     /locus_tag="VEQ16_07625"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007438425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0009265 - 2'-deoxyribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HYP63740.1"
                     /translation="MALTPEQISEIDAARAVSHSTLRPTVAALEEYLFKPVPVLDHGF
                     VRVVDYMGDDAAVVQAARVSYGRGTRKALEDEGLIRYLMRHYHSTPFEMCEIKFHVKL
                     PIFVARQWIRHRTANVNEYSARYSILDKDFYLPAPEQLAVQSSDNKQGRGEVLDAATA
                     ERVLRLLREDADQTYAHYEEMLGDEIGLARELARMNLTLNTYTQWYWKTDLHNLFHFL
                     RLRADAHAQYEIRVYAEAMLEMAKAWVPLSYKAFCDYRLGAVTFSAKMMEILRRMLAG
                     EAVEQAGSGLSKREWTEFMAALGREGVP"
     gene            complement(2260..2787)
                     /locus_tag="VEQ16_07630"
     CDS             complement(2260..2787)
                     /locus_tag="VEQ16_07630"
                     /inference="COORDINATES: protein motif:HMM:NF025116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HYP63741.1"
                     /translation="MTRAGESIAVLTCIGQDRPGLVNAIAEQISAAGGNWLESRLEHL
                     AGQFAGIVQVRVPEGRIPALTAALQSLQGLSVTLAQGVDEPEPALIPLTLAVLGHDRP
                     GIVRDVTQALTKLGVNIEEFSSAIESAPFTGEEMFRATLKLGLPEHVSSDEVRRILEK
                     LADEIMVDIKAEETV"
     gene            complement(2787..>3202)
                     /locus_tag="VEQ16_07635"
     CDS             complement(2787..>3202)
                     /locus_tag="VEQ16_07635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019015176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HYP63742.1"
                     /translation="TTIFMVYTASSIGAVFFVTAGTFAATSLYGYTTGRDLTSMGSFM
                     MMGLFGIIIASLVNLFLHSPALQFALSIIGVFVFVGLTAYDTQRIKADYVQFGSSYGI
                     EMAGKRSVYDALQLYLNFINLFLFLLQLFGQRNQR"
BASE COUNT          632 a          913 c         1045 g          612 t
ORIGIN      
        1 gtaaaaatcc cgttcgagaa ggggctggcg gggcattcgg atgcggatgt tggcatccat
       61 gcgctgtgcg atgcgattta cggcgcgctg gcggaagggg atatcgggcg gcatttcccg
      121 cccaccgaaa acacctggaa agacgctgat agtgcccggt ttttgcgcca cgcggcggag
      181 cgcatcgcgg cgcgcggggg gcggcttgcc aatgccgaca tcaccatcat ctgcgagcgg
      241 ccgaagataa agccgcatgc ggcggcgatg caggcgcggc tggcggagct gctgggcgtg
      301 tccgaggggc ggatttccgt gaaagcgacg acgaccgagc agctgggctt caccggacgc
      361 ggcgagggga ttgccgccca ggcagcggtg gttgtgctgg tacccgataa agactaaatt
      421 gtgaccagat tcgggcaaaa ccgaacaaat ctgcaatatg cagcctgcca cgtgaaacgg
      481 tgtgtacaaa attacatcaa atccagcaaa tttacattgc tgcagtgcaa aatcacgact
      541 gccccgccag gaattcttct cgtatataat cgggccatag gctgagtttt ctcgcctatt
      601 ttcttggacg tttcctccct aaacttggcg gcgcattatt gcgccgcctt ttttttcgcc
      661 ttggggtggg agatatccct acctggaatg cgcgaacctg tctggaaact cgctctggtg
      721 agtcagctgg cgcggttcgg ggagcaccgg agcggagcgt actacagtac gcgagcccgt
      781 tgcttcacgt gctcggacca atggcgcgcg ctcgcaaccg cagacatgca gtgccaggcg
      841 gccagcccag tagggttttc aaaggaatgt ggagtggggg gcttctgttg cccggtgccc
      901 cccgaaccgc gcttagctac tgattaggca gcgacagcga atgcaacgtt gttatcgttc
      961 gcatttaaag attagcccga taacggcggt acaatgccgg gcaaaaggtg ggtctttact
     1021 acacgtgtcg agactgtttc gcccccataa atctggccga cccgattcag actacgcgct
     1081 gcgcgcttcg tcatcggggc ggctcgacgt ttggtggagg cgccgggtac tgcccccggg
     1141 tccacaatgt ttattccacg caccgtttat caccatagcc ggcaagccgg cagggcctat
     1201 ataggcgcga ctcgcaggat gtgaaagagt gccgttatgg cacttacccc tgaacagata
     1261 tccgaaatcg acgccgcccg ggcggtcagc cacagcacat tgcgccccac cgtggcggcg
     1321 ctggaggaat atctcttcaa gcccgtgccg gtgctggacc atggcttcgt ccgggtggtg
     1381 gattacatgg gcgacgatgc cgccgtggtg caggcggcgc gggtctccta cggaaggggc
     1441 acgcgcaagg cgctggagga tgaggggctc atccgctacc tcatgcggca ttaccactcc
     1501 acgccgttcg agatgtgcga gataaaattc catgtgaagc tgccgatttt cgtggcgcgg
     1561 caatggatcc ggcaccgcac ggcgaatgtg aacgaatatt cggcgcgcta ttcgattttg
     1621 gacaaggatt tctacctccc cgcgccggag cagcttgcgg tgcagtcttc ggataacaag
     1681 caaggccgtg gcgaggtgct ggatgcggca acggccgagc gcgtgctgcg gctcctgcgc
     1741 gaggacgcgg accagaccta cgcgcattat gaggagatgc tgggcgacga gatcggcctg
     1801 gcgcgcgaac tggcgcggat gaacctgacg ctgaacacct atacgcaatg gtactggaag
     1861 acggatttac acaatctctt ccatttcctg cggctgcgcg cggatgcgca tgcgcagtac
     1921 gaaatccgcg tctatgccga ggcgatgctg gagatggcga aggcctgggt cccgctatcc
     1981 tacaaggcgt tctgcgatta ccggctgggg gcggtgacgt tctccgccaa gatgatggag
     2041 attttgcgcc ggatgctggc cggggaagcg gtggagcagg cagggtctgg gctgagcaag
     2101 cgcgagtgga cggagtttat ggccgccctg gggcgcgaag gcgtcccata gcgtcagctg
     2161 cttcgtccca agttgtaaga gttttttgga ctgcgaagcg catcatcacc ggttcaagcg
     2221 cgctgagcgg ttccttctat tttacaaaag ggcgcactct taaacggtct cttccgcctt
     2281 tatatccacc ataatctcat cagcgagctt ttcgagtatc cgccgcacct cgtcgctgga
     2341 cacatgctcc ggcagcccca gcttcagcgt cgcccggaac atttcttcgc ccgtgaacgg
     2401 cgcgctctcg atggcggagg aaaactcctc gatgttcacg cccagcttgg tgagggcctg
     2461 cgtcacatcc cggacgatgc cggggcggtc gtggcccagc accgccagag tgagggggat
     2521 gagcgccggc tcgggctcgt caacgccctg ggccaaggtg acggacaggc cctgcaggga
     2581 ttgcagcgcg gcggtgaggg cggggattcg gccctccggc acgcgtacct ggacgatacc
     2641 cgcaaactgg ccggccagat gttccagccg gctttccagc caattgccgc cggccgcgga
     2701 aatctgctcg gcgatggcgt tgacgaggcc ggggcggtcc tggccgatgc aggtcaggac
     2761 cgcgatgctt tccccggcgc gggtcatcag cgctggttcc gctggccgaa gagctgcagc
     2821 aggaacagga acaggttgat gaagttcaga tagagctgca gcgcgtcata caccgagcgc
     2881 ttgcccgcca tctcgatgcc gtaggacgag ccgaactgaa cgtaatcagc cttgatgcgc
     2941 tgcgtgtcgt aggcggtgag gccgacaaac acgaacacgc cgatgatgga gagggcgaac
     3001 tgcagcgccg gcgaatgcag gaacaggttc accagcgagg cgatgatgat gccgaacagg
     3061 cccatcatca tgaagctgcc catgctcgtc aggtcgcgcc cggttgtgta gccgtacagg
     3121 ctggtggcgg cgaaggtgcc ggccgtgacg aagaacacgg cgccgatgga gctggccgta
     3181 tagaccatga aaatggtggt ca
//
LOCUS       DASQCV010000501         2116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2099093, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000501 DASQCV010000000
VERSION     DASQCV010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2099093"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..213)
                     /locus_tag="VEQ16_07640"
     CDS             complement(<1..213)
                     /locus_tag="VEQ16_07640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HYP63743.1"
                     /translation="MQIERLAIPEVLLITPPKFADNRGWFSESWNAGKLAVQGFNEKF
                     VQDNHSYSASAGTIRGLHCQVAPNVQG"
     gene            complement(213..1094)
                     /gene="rfbA"
                     /locus_tag="VEQ16_07645"
     CDS             complement(213..1094)
                     /gene="rfbA"
                     /locus_tag="VEQ16_07645"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008879 - glucose-1-phosphate
                     thymidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HYP63744.1"
                     /translation="MIRKGIILAGGSGTRLHPITQASSKQLLPVYDKPMIYYPLCTLL
                     LAGITEVLIISTPQDLPQFQRLFHDGSHLGIRITYAEQPSPDGLAQAFLIGETWIDGE
                     GCALALGDNLIHGDHLSTLLRAATARPEGATVFAYQVRDPERYGVVSFNEDGKAVHIV
                     EKPKQPTSPWAVTGLYFYDHRVVELAKSIKPSPRGELEITDLNQLYLEQGTLHVERLG
                     RGTAWLDAGTPDSLLQAATFVQTIQTRQGNLVGCPEEVAFRMGFIDAPQLKSRAALIG
                     KTELGRILHDIAEGVHA"
     gene            complement(1091..>2116)
                     /gene="rfbB"
                     /locus_tag="VEQ16_07650"
     CDS             complement(1091..>2116)
                     /gene="rfbB"
                     /locus_tag="VEQ16_07650"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014106689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008460 - dTDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HYP63745.1"
                     /translation="FIGSAVVRRAIRAGHEIVNIDKMTYAASKEALEETLTNPRHRLI
                     EADICDLAAMREAFAAHQPDAVMHLAAESHVDRSIDGPAAFVHTNVTGTCLLLEAARE
                     YYATLSGEKRENFLFHHISTDEVFGALEDGDPAFNEYTPYDPRSPYSASKAASDHLAR
                     AWMHTYGLPVIVSNTTNNYGPWQFPEKLIPLTLINAIEEKPLPVYGQGLNTRDWLFVD
                     DHAEALLKVVSAGVPGDTYCIGAKQPRRNIDVVKAICAIIDEKLPSANGSRERLITYV
                     TDRPGHDHRYEIDPTTAEKELHWEAAHDFERGLRVTADWYLANQEWWQGIRAQKYAGQ
                     RLGGAEK"
BASE COUNT          392 a          653 c          655 g          416 t
ORIGIN      
        1 gccctgcaca ttgggcgcca cctggcaatg cagcccgcgg atcgtgcccg cggaagccga
       61 gtaggaatgg ttatcctgca cgaatttttc gttgaacccc tgcaccgcca gcttgccggc
      121 attccagctc tcggaaaacc agccgcggtt atcggcgaat tttggcgggg tgatgagcag
      181 cacttcgggg atggcgagtc tctcgatctg cattacgcgt gcaccccttc ggcgatgtca
      241 tgaagaattc gccccagctc cgtcttgccg atgagcgcgg cgcgggattt gagttgcggc
      301 gcatcgatga agcccatgcg gaacgccacc tcttccggac agccgacgag attgccctgg
      361 cgggtctgga tggtctgcac gaaggtcgcg gcctgcagca gggaatccgg tgtgccggca
      421 tcgagccagg ccgtgccgcg cccgagccgt tccacatgca aggtgccctg ctccaagtaa
      481 agctggttga ggtcggtaat ctccaactcg ccgcgcgggg aaggcttgat ggatttggcc
      541 agctccacca cgcgatgatc gtagaaataa agtcccgtca ccgcccaggg cgaggtgggt
      601 tgcttcggct tctcgacaat atgcaccgcc ttgccgtcct cattgaagct gacgacgcca
      661 tagcgttccg ggtcgcgcac ctggtaggcg aacaccgtcg ccccttcggg ccgcgccgtc
      721 gcggcgcgca gcagcgtgga gagatggtcg ccatggatga ggttgtcgcc cagcgccagc
      781 gcgcagcctt cgccatcgat ccaggtctcg ccgatgagaa acgcctgggc cagcccgtcc
      841 gggctcggct gctcggcata ggtgatgcgg atgcctaagt gcgagccgtc atggaacaga
      901 cgctggaatt gcggcaaatc ctgcggcgtg gagatgatca gcacttccgt gatgcccgcc
      961 agcagcaagg tgcaaagcgg gtaatagatc atcggcttgt catagacagg cagcaactgc
     1021 ttggacgagg cctgggtgat gggatgcagc cgcgtgcccg agccgccggc gagaatgatg
     1081 cccttccgaa tcacttttct gctcccccga gccgctgccc ggcatatttc tgtgccctga
     1141 tgccctgcca ccattcctgg ttggcgagat accaatccgc cgtcacgcgc aggccgcgct
     1201 cgaaatcatg cgccgcctcc caatgcagtt ccttctccgc cgtggtcggg tcgatctcat
     1261 agcggtggtc atgaccgggc cggtccgtca cataggtgat cagccgctcg cgcgacccat
     1321 tggcgctggg cagcttctca tcgatgatgg cgcagatcgc cttaacgaca tcgatattac
     1381 gccgcggctg cttggcgccg atgcaataag tgtcgcccgg cacgccggcg ctgaccactt
     1441 tcaacagcgc ctcagcatga tcatccacga acagccagtc cctcgtattc aggccctggc
     1501 catagacggg caagggcttt tcctcaatcg cattgatcag tgtcagtggg atcaattttt
     1561 cgggaaattg ccagggcccg taattattcg tggtgttgga gacgatgaca ggcaaaccgt
     1621 aagtatgcat ccaggcccgc gccagatggt cggacgccgc cttgctggcc gaatagggac
     1681 tacgcgggtc atagggcgtg tactcattga aagccgggtc accatcttcc agcgcgccga
     1741 acacttcgtc ggtggaaata tggtggaaga ggaaattctc ccgcttctcg cctgagaggg
     1801 tggcgtaata ttcacgcgcc gcttccagga gcaaacatgt gccggttacg ttcgtgtgga
     1861 cgaaggccgc gggcccgtcg atcgagcggt ccacatggct ttccgccgcc agatgcatca
     1921 cagcgtccgg ttgatgggcg gcaaaagcct cgcgcatggc ggccagatcg caaatatccg
     1981 cctctatgag gcggtggcgc gggttggtca gcgtctcttc cagcgcctcc ttcgaggcgg
     2041 cataagtcat cttgtcgata ttgacgatct cgtgcccggc gcggatggcg cgccgcacca
     2101 ccgcggagcc gataaa
//
LOCUS       DASQCV010000502         1739 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1437019, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000502 DASQCV010000000
VERSION     DASQCV010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1437019"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..742)
                     /locus_tag="VEQ16_07655"
     CDS             complement(<1..742)
                     /locus_tag="VEQ16_07655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007435806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HYP63746.1"
                     /translation="MGGDHAPEAIISGLDIACVRHPRARFLIFGDEARVAPLIAAARR
                     LKSQCEFRHAAETISGDMKPTVALRLRDSSLRRAIDAVLAGEAAGVISAGNTGALLAL
                     SKIVLKTMKGIDRPAMAATAPSARGDVVMLDLGLNVVYDARNLVEFALMGQLFAKVVL
                     GLPAPTIGLLNIGSEEGKGDETLRQAAAALRESPIGAQFHGFVEGHDIAGGTVNVIVT
                     DGFTGNVALKTGEGALRFVGGLIRKVFEA"
     gene            complement(821..1024)
                     /gene="rpmF"
                     /locus_tag="VEQ16_07660"
     CDS             complement(821..1024)
                     /gene="rpmF"
                     /locus_tag="VEQ16_07660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HYP63747.1"
                     /translation="MAVPKRKTSPSRRGMRRSHHALRAEAHAECANCGELKRPHHVCA
                     HCGHYDNREVVGAGKEAKGVVRV"
     gene            complement(1147..1659)
                     /locus_tag="VEQ16_07665"
     CDS             complement(1147..1659)
                     /locus_tag="VEQ16_07665"
                     /inference="COORDINATES: protein motif:HMM:NF014657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceD family protein"
                     /protein_id="HYP63748.1"
                     /translation="MNSEFSKPVKAGHIHGEPQHFTLEAGEEARAALARRFSLPNIAQ
                     LSGQFTLRHERGGVISAQLVMRARVTQLCVITNEPFEVDIAEQAELRFVPAESLTEEE
                     DFGPDSLAAPDEIPYENDVIDLGEALAEQLALALDPYPRKPGAVLPGEATDDETGPFA
                     ALKGKFGKLS"
BASE COUNT          314 a          561 c          553 g          311 t
ORIGIN      
        1 cggcctcgaa caccttgcgg atgagcccgc cgacaaatcg cagcgcgccc tcccccgtct
       61 tcagcgccac attgcccgtg aagccatccg tgacgatcac gttgaccgtg ccgccggcaa
      121 tgtcgtggcc ttcgacgaag ccatggaact gagcgccgat cgggctctcg cgcagggccg
      181 cggcggcctg gcgcagtgtc tcgtcgccct tgccttcctc ggagccgata ttgagcaggc
      241 caattgtggg ggccggcagg ccgagcacca ctttggcaaa aagctggccc atcagggcga
      301 attcgaccag gttgcgggcg tcatagacca cgttcaaccc gagatcgagc atcactacat
      361 cgccgcgcgc ggagggggcg gtggcggcca tggccgggcg gtcgatgccc ttcatggtct
      421 tcagcacgat tttggaaagg gcgagcagcg ccccggtatt gccggcggaa atcaccccgg
      481 ccgcctcgcc agccagcacg gcatcaatgg cccggcgcag agaggaatcg cgcagacgca
      541 acgccaccgt cggcttcatg tcgccggaga tggtctcggc ggcatggcgg aactcgcact
      601 ggctcttcag ccgcctggcc gccgcaatga gcggcgccac acgggcttcg tcaccgaaaa
      661 taagaaaccg cgcccgtgga tgccgcacgc aggcgatatc cagcccggaa ataatggctt
      721 ccggggcgtg gtcgccgccc atggcatcaa cagccagtat agtgctccgg ctcactgcat
      781 acctcgggcg tttcctctcg ccgcttgcgg tgattaggat ttagacgcgg acgacgccct
      841 tggcttcctt gccggcgccg acaacttcac gattgtcgta atggccgcaa tgcgcgcaca
      901 catggtgggg acgcttcagc tcgccgcaat tggcgcattc ggcatgcgct tcggcgcgca
      961 gcgcgtggtg gctgcggcgc atcccgcggc gggatgggga ggttttacgc ttgggtacgg
     1021 ccatgggact acgccttaaa atttgctcag agtgataagg aaggcgcggg ttagcagagg
     1081 tcaatgcaca tcgcaagtca tacgagcaat gatgagtaca caaggaggtg taatatcatc
     1141 tgcttgctag gaaagcttgc cgaatttacc tttcagcgcc gcgaacggac ccgtctcgtc
     1201 atccgtcgcc tcgcccggca gtaccgcgcc cggcttgcgc ggatatgggt ccagggccag
     1261 ggccagctgc tcggcaagcg cttcgcccag gtcgatcacg tcgttctcat aggggatctc
     1321 gtccggtgcc gcgagcgagt cggggccaaa atcctcttcc tcggtgaggg actcggcggg
     1381 cacgaagcgc agctcggcct gctcggcgat gtcgacctcg aacggctcgt tggtgatgac
     1441 gcaaagctgc gtcacacgcg cccgcatgac gagctgggcg gaaatgacgc cgccgcgctc
     1501 atggcgcagg gtgaactggc cgctcaactg cgcgatgtta ggcagactga agcgccgcgc
     1561 cagggcggcg cgcgcctctt ccccggcctc cagggtaaaa tgctgcggct cgccatggat
     1621 atgcccggcc ttcacaggct tgctgaattc gctgttcatt ggcgctatat agaccctgtg
     1681 cattgacagt taagcccccg ccgtgagacc caaccctcca gatgtttatg ccgcgcgcc
//
LOCUS       DASQCV010000503         1690 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2265213, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000503 DASQCV010000000
VERSION     DASQCV010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1690
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2265213"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..467
                     /gene="pth"
                     /locus_tag="VEQ16_07670"
     CDS             <1..467
                     /gene="pth"
                     /locus_tag="VEQ16_07670"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011633017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HYP63749.1"
                     /translation="RFKGQCAEGRIGLEKILLLKPMTYMNLSGESVQEAAAFYKIQPG
                     DIIAFHDELDLAPGKMRVKKGGGNAGHNGLRSMDRHLGTPDYWRVRLGIGHPGDKARV
                     TGHVLSDFSKADKDWLDLLLDEMAAAADLLAAQKPEDFMTRIARVTEQKNGL"
     gene            457..1551
                     /gene="ychF"
                     /locus_tag="VEQ16_07675"
     CDS             457..1551
                     /gene="ychF"
                     /locus_tag="VEQ16_07675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019086085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HYP63750.1"
                     /translation="MGFNCGIVGLPNVGKSTLFNALTATVAAQAANYPFCTIEPNVGR
                     VAVPDRRMQMLAEIGKSQKIVPTSLEFVDIAGLVRGASKGEGLGNQFLANIREVDAIV
                     HVLRCFEDDDVTHVEGSVDPIRDAETVETELMLADLESLTKRVPLLQKKAKTNDKQAV
                     ADLAVIEPLIAALEAGKPARMAIPRGEEEAVRRLNLLTSKPVLYVCNVEEAAAATGNV
                     QSARVADMAAAQGAKHVIISAAIEAEVSQLPEEDRPGFLADLGLEDSGLDRIIRAGFA
                     LLGLITYFTVGPKETRAWTIIRGTKAPGAAGVIHGDFERGFIAAETIAFDDYVANKGE
                     AGAREAGKLRVEGKEYVVKDGDVLLFRFNV"
BASE COUNT          316 a          483 c          586 g          305 t
ORIGIN      
        1 cgcgtttcaa ggggcaatgc gccgaggggc gcatcggcct tgagaagatt ctgctgctga
       61 agccgatgac ctacatgaac ctctcgggtg aatcggtgca ggaggcggcc gccttctaca
      121 aaatccagcc tggggacatc attgccttcc atgacgagct ggatctcgcg ccgggcaaaa
      181 tgcgggtgaa gaagggcggc ggcaatgccg gccataatgg gctgcgcagc atggacaggc
      241 atctgggcac gccggattac tggcgggtgc ggcttggcat cggccatccg ggcgacaagg
      301 cgcgcgtgac cggccatgtg ctgagcgatt tttccaaagc agataaagac tggctggatc
      361 tgctgctgga cgagatggcg gcggcggcgg acctgctggc ggcgcaaaaa ccggaagatt
      421 tcatgacccg catcgcgcgg gtgacggagc aaaaaaatgg gctttaattg cgggattgtc
      481 gggctgccga atgtcggcaa atcgaccttg ttcaacgcgc tcacggccac ggtcgccgcg
      541 caagccgcga actatccttt ttgcacgatc gagcccaatg tcggccgcgt ggcggtgccg
      601 gataggcgca tgcagatgct ggcggagatc ggcaaatcgc agaaaatcgt gccgaccagc
      661 ctggaatttg tcgacatcgc cgggctggtg cgcggcgcct ccaagggcga gggacttggc
      721 aatcagttcc tcgccaacat ccgcgaggtg gatgccatcg tgcatgtgct gcgctgcttc
      781 gaggatgacg acgtgacgca tgtggagggt tcggttgacc ccatccgcga tgccgagacg
      841 gtggaaaccg agctgatgct ggcggatttg gaaagcctga ccaagcgcgt gccgctgttg
      901 cagaagaagg cgaaaaccaa tgacaagcag gcggtggccg accttgccgt gatcgagccg
      961 ctgattgcag cacttgaagc cggcaagccg gcgcgcatgg ccattcccag gggcgaggag
     1021 gaggcggtgc gtcgcctcaa tctgctcacc tcgaagcccg tgctttacgt gtgtaacgtt
     1081 gaggaggcgg cggccgccac cggcaatgtg cagagcgcgc gcgttgcgga catggcggcg
     1141 gcgcagggtg cgaaacatgt catcatctct gccgccatcg aggccgaggt gagccagctt
     1201 cccgaggagg accgccccgg cttcctggcc gacctggggc ttgaggatag cgggctggac
     1261 cgcatcatcc gcgccggttt cgcgctgctc ggcctcatca cctatttcac cgtggggccg
     1321 aaagagaccc gcgcctggac cattatcagg ggcaccaagg cgccgggggc ggcgggcgtc
     1381 atccatggcg atttcgagcg cggcttcatc gcggccgaga ccatcgcctt tgacgattat
     1441 gtcgccaaca agggcgaggc cggggcgcgc gaggcgggca agctgcgcgt cgagggcaag
     1501 gaatacgtgg tgaaggacgg cgacgttctg ctcttccgct tcaacgtgta atcacgctag
     1561 ggtcggggca tgaccccggt ccgtttcatc gagagcatcc tcttcggcgg acgctggctg
     1621 ctggtgccga tgtatgtcgc catgcttggc gtgctgattc tgctcggcgc ttatttcatt
     1681 ggcgagctgg
//
LOCUS       DASQCV010000504         1870 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2928276, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000504 DASQCV010000000
VERSION     DASQCV010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2928276"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..244)
                     /locus_tag="VEQ16_07680"
     CDS             complement(<1..244)
                     /locus_tag="VEQ16_07680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63751.1"
                     /translation="MARRGQGSGYFAKLAGTPLAGPVLRPAAWPVMADAAPALEAFSP
                     NFPTPAPRPLTMAPAGPLPHRETTLQGPPLPPEAATV"
     gene            complement(246..1004)
                     /locus_tag="VEQ16_07685"
     CDS             complement(246..1004)
                     /locus_tag="VEQ16_07685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63752.1"
                     /translation="MFTLPVSRLEVALRPPCGADDLALVEGPREALPAAIAMLARLAR
                     RLDGAAQDWAQLTVTDFEFLLLNLRGFLLGDDISSMAACAACGERVEISFGIAAYTAH
                     VQPQLVAGVEAAREGWLVLGAARFRLPVMADVLEARTARDPGETLRRRCLAPQLESRL
                     QRRIEQVIEKLAPQASGEVGGACPSCGTALASWFDVPGFVMAELRRLAAGLYREVHLL
                     AAHYHWAEAAILALPGARRRAYAGLILDASLAGG"
     gene            complement(1008..1517)
                     /locus_tag="VEQ16_07690"
     CDS             complement(1008..1517)
                     /locus_tag="VEQ16_07690"
                     /inference="COORDINATES: protein motif:HMM:TIGR02241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HYP63753.1"
                     /translation="MPIFPANMNRFDPYKAYRFLVYFNSAPTTPVAGVSKVGTLKRSS
                     DVIDYKEGGNAIIRKGLGRTKYEPITLERGLTQDTAFQTWANYAQVLSSGAPQTSLSN
                     LRQNIIITLLNEAAQPVIRYKLYRCWVSEYQAMPDLDAGGNAVAIEHIKLENEGWERD
                     LTLQEPAEI"
     gene            complement(1540..>1870)
                     /locus_tag="VEQ16_07695"
     CDS             complement(1540..>1870)
                     /locus_tag="VEQ16_07695"
                     /inference="COORDINATES: protein motif:HMM:NF037565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail sheath C-terminal domain-containing
                     protein"
                     /protein_id="HYP63754.1"
                     /translation="SKYVPVRRMTLFLEQTLRANLRWVVFEPNDTPLWTAIKLSIEAF
                     LLGIWNQGGLQGLTPAQAFQVKCDSSTTTAADQQNGIVNIVVAFAPLKPAEFVVIQIA
                     QLAGQTS"
BASE COUNT          314 a          630 c          608 g          318 t
ORIGIN      
        1 gtaccgtagc ggcctcgggg ggcaatggcg ggccttgcaa tgtcgtctca cggtggggga
       61 gcgggccggc cggcgccatt gtcagcgggc gtggcgccgg ggtggggaaa ttgggggaaa
      121 atgcctccag cgccggggcg gcatccgcca tcaccggcca cgctgccggg cgcagtaccg
      181 gccccgccag gggtgtgcct gccagcttgg cgaaatagcc gctgccctgg ccgcgccgcg
      241 ccatctcagc cccccgccag gctggcgtcg aggatgagcc cggcataggc ccggcgccgc
      301 gcccccggca acgccaggat cgccgcttcc gcccaatggt aatgcgcggc gagcagatgt
      361 acttcgcggt acagcccggc ggccagccgc cgcagttccg ccatgacaaa acccggcaca
      421 tcgaaccagc tggcgagcgc cgtgccgcag ctggggcagg caccgcccac ctcgccgctc
      481 gcctgcggcg ccagtttttc gatcacctgt tcgatccgcc gctggagccg gctctccagc
      541 tgcggcgcca ggcagcgccg ccgcagcgtt tcgcccggat cgcgcgctgt tctcgcttcc
      601 agcacatccg ccatcaccgg cagccggaac cgggccgcgc ccaataccag ccagccttcc
      661 cgcgccgcct ccacccccgc gacaagctgc ggctgcacgt gcgcggtata ggctgctatg
      721 ccgaaggaga tttccacgcg ctcaccgcaa gcggcgcagg cggccatgct gctgatgtcg
      781 tcgcctaaca gaaagccgcg caaattcagg agcagaaact caaaatccgt tacggtgagc
      841 tgggcccaat cctgagccgc gccatccagc cgccgtgcca ggcgcgccag catcgcgatg
      901 gccgccggca gcgcctcgcg tggtccctct accaatgcca gatcatccgc cccgcaaggt
      961 ggccgcaacg ccacctccag gcggctgact ggaagggtga acatggctca gatctcggcc
     1021 ggctcttgca gcgtcaggtc gcgttcccag ccctcgttct cgagcttgat atgctcgatc
     1081 gcgacggcat tcccgccggc gtcgagatcc ggcatggcct ggtattcgga cacccagcag
     1141 cggtagagct tgtagcggat gacgggctgc gccgcctcgt tcagcaaggt gatgatgatg
     1201 ttctggcgca gattggaaag tgatgtctgc ggggcgccgg aggagagaac ctgcgcgtaa
     1261 ttcgcccagg tctggaaggc cgtgtcctgc gtcagcccgc gttccagcgt gatcggctcg
     1321 tatttggtcc gccccagccc tttgcggatg atggcattgc cgccctcctt gtagtcgatc
     1381 acgtcggagg agcgcttcag cgtcccgacc ttgctgacgc cagcaacagg cgtggtcggc
     1441 gcggaattga aatagaccag gaaccggtag gccttgtacg ggtcgaatcg gttcatattg
     1501 gcgggaaaaa tcggcatctt cggaaaactc ctctctggct cagctcgtct ggccggcaag
     1561 ctgggcgatc tggatgacga caaattcggc cggcttcagc ggcgcgaagg cgacgacgat
     1621 attgacgatg ccgttctgct gatccgctgc cgtggtggtc gagctgtcgc atttcacctg
     1681 gaaagcctgt gccggcgtca acccctgcaa accgccttgg ttccagatgc cgagcaggaa
     1741 cgcctcgatg gagagtttta tggcggtcca gagcggcgtg tcgttgggct cgaacacgac
     1801 ccagcgcaga ttggcgcgca gtgtctgttc gaggaacaac gtcatgcgcc gcaccggcac
     1861 gtatttcgat
//
LOCUS       DASQCV010000505         1820 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_441182, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000505 DASQCV010000000
VERSION     DASQCV010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1820
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_441182"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /gene="rlmN"
                     /locus_tag="VEQ16_07700"
     CDS             <1..622
                     /gene="rlmN"
                     /locus_tag="VEQ16_07700"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003630973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0002935 - tRNA
                     (adenine(37)-C2)-methyltransferase activity [Evidence
                     IEA];
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0070040 - rRNA
                     (adenine(2503)-C2-)-methyltransferase activity [Evidence
                     IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HYP63755.1"
                     /translation="SPKGETPRLLSTIVLMGMGEPLYNYENVAKAMKIIMDGEGIALS
                     RRRITLSTSGVVPMMDRAGEELGINLAVSLHAVRDDLRDEIVPLNRKYPIKELIEACR
                     RYPGASNARRITFEYIMLRGINDSEAEARELVRLISGLPAKVNLIPFNPWPGSAYQPS
                     TPEALKKFAAIVMNAGYASPIRTPRGRDILAACGQLKSAVEKGAAA"
     gene            940..1398
                     /locus_tag="VEQ16_07705"
     CDS             940..1398
                     /locus_tag="VEQ16_07705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63756.1"
                     /translation="MGVYLITGGAKGLGAEIARQLHGAGNSILFADIERVTVPGVRSV
                     ICDLSDERQVASLMFGVEAIEGRLDGLVCHPPGCTLDDFSSTGMLINAAAGLLRQPRG
                     AAVAVHAEDAAALPALTRILARDLGPDIRVECFAPFGEEHLDSLQAYLMG"
     gene            1481..>1820
                     /locus_tag="VEQ16_07710"
     CDS             1481..>1820
                     /locus_tag="VEQ16_07710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014414701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HYP63757.1"
                     /translation="MRIFKNMGDNAHCQHRGENPCGHRRFMRGEGHHRHFGRGGRVAR
                     FLEHGDLRLLVLHLISQEPRHGYDLIKAIEDLTGGAYAPSPGVIYPTLTMLEELGQAE
                     ATAEGSKKLYT"
BASE COUNT          377 a          624 c          491 g          328 t
ORIGIN      
        1 cagccccaag ggcgagacgc cgcgcctttt gagcaccatc gtgctgatgg gcatgggcga
       61 gccgctctat aattacgaaa acgtcgcgaa agcgatgaag atcatcatgg acggcgaagg
      121 catcgccctc tcccgccgcc gcatcaccct ctccacctcc ggcgtggtgc cgatgatgga
      181 ccgcgccggc gaagagctcg gcatcaacct cgccgtttcg ctccatgccg tgcgcgatga
      241 cctgcgcgat gagatcgtgc cgctcaaccg caaatacccc ataaaagagc tcatagaagc
      301 ctgccgccgc tatcccggcg cctccaacgc gcgccgcatc accttcgaat atatcatgct
      361 gcgcggcatc aatgattccg aggccgaagc ccgcgaactg gtccgcctca tctccggcct
      421 gccggccaag gtgaacctca tccccttcaa cccctggccc ggcagcgcct accagcccag
      481 cacgcccgag gcgctgaaga aattcgccgc catcgtcatg aacgccggct acgcttcgcc
      541 gatccgcacc ccccgtgggc gcgatatttt ggcagcgtgc gggcagttga agagcgccgt
      601 ggagaagggc gcagcggcct aaaccgtcat tgcgagcgta gcgaagcaat ccatctccag
      661 gacgcggctg gctggaccac tgcgtcccat ggctccagga aattgtcaca ttttttgtcc
      721 gaaacatgac gggattgtca tgtaactgcc ccacgcaatc gcacccctta tgacaaccct
      781 gcggcaaaaa cgttacacca ccatgacatc cgcaatcccg tcacatttca tcgcaaaatc
      841 aaccccaaat tgccccaaac ctgccatata accccaagag acaaggaccg ccgcttgaag
      901 gggcggcaga ggaaccaaca tagccggcag gagcacataa tgggtgtcta tctcatcacc
      961 ggcggcgcca aggggctggg cgccgagatc gcccggcagt tgcacggggc cggtaattcc
     1021 atcctgttcg cggatattga gcgtgtcacc gtccctggcg tgcgcagcgt catttgcgac
     1081 ctttcggacg agcgccaggt tgccagcctg atgttcggag tcgaggccat cgaggggcgg
     1141 ctggatgggc tggtctgcca cccgcccggc tgcaccctgg atgatttttc ctccaccggc
     1201 atgctcatca acgccgccgc cggactgctg cgccagccgc gcggcgccgc tgtggccgta
     1261 catgccgaag acgccgccgc tttacctgcg ctcacccgca ttttggcgcg cgacctcggt
     1321 ccggacatcc gcgtcgaatg ttttgccccc ttcggcgagg agcatctgga cagcctccag
     1381 gcctatctca tgggctgaaa cacccgtcct ttcttttccc ttgacttaga ctgtatttag
     1441 atatatctaa actatatctg aaacgcagtt aggagtaaaa atgcgtattt tcaaaaacat
     1501 gggcgataac gcccattgcc agcacagggg cgaaaacccg tgcggccatc gccgcttcat
     1561 gcgcggcgaa ggccatcacc gccatttcgg ccgcggcggc cgcgtcgcgc gcttcctcga
     1621 acatggcgat ctgcgtcttc tggtgctgca tctcatcagc caggaaccgc gccatggcta
     1681 tgacctcatc aaggccatcg aagacctcac cggcggcgcc tacgcgccga gccccggcgt
     1741 catctacccc accctcacca tgctggaaga actcggccag gccgaagcca ccgccgaggg
     1801 gagcaaaaaa ctttatacca
//
LOCUS       DASQCV010000506         1763 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2928401, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000506 DASQCV010000000
VERSION     DASQCV010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2928401"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VEQ16_07715"
     CDS             complement(<1..380)
                     /locus_tag="VEQ16_07715"
                     /inference="COORDINATES: protein motif:HMM:NF016430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HYP63758.1"
                     /translation="MKRRQPDTRSAGATLTPGVSLAAAAEQPAGAVASTGRDEAEELF
                     NACYPRLAGWVRRLVDTDEDAHDIAAEAFARLLGRWSRVDNPHGYLYVIAANLISDHW
                     RKAGREQRAIKDLATAAAGASCHTA"
     gene            884..1495
                     /locus_tag="VEQ16_07720"
     CDS             884..1495
                     /locus_tag="VEQ16_07720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63759.1"
                     /translation="MLTVALDLPSAQILADQAGIIQDLQFVMDCCKRLLTELAKPEED
                     RDGVVPQALWASALLAYARCFSKSKRFGLTTEDVQNLPLHGAVMKFHKWVIEERNKLT
                     AHPADPLEAAKIGAALSPPGRAQRQVEGIAIFSSSHVLIDAIGVRQLGGLASELAKQT
                     AEKAQEQQDSVLADAQQLNIDSLYRLPPLHMRPPTAGAAGDAP"
     gene            1512..>1763
                     /locus_tag="VEQ16_07725"
     CDS             1512..>1763
                     /locus_tag="VEQ16_07725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63760.1"
                     /translation="MQNGQIWIAGIPTGAEPTSTQIGGSGALSDNWPDTKRDLQNERV
                     YNGGVQTKQRTILSDSRPDVAEQRCVSTLVRGPAAVAALV"
BASE COUNT          317 a          566 c          579 g          301 t
ORIGIN      
        1 gccgtgtgac aggaggcccc ggcggcggca gtggccaggt ccttgatcgc gcgctgttct
       61 ctccccgctt tgcgccagtg gtcactgatc aagtttgctg ctatcacgta caggtagccg
      121 tgcgggttgt caacccggga ccagcggccc agcagccggg caaaagcctc cgccgcgatg
      181 tcatgtgcgt cctcgtcagt gtcgaccagc cgccggaccc agccggccag ccggggatag
      241 cacgcgttga acaactcctc ggcctcatcg cggccagtgc ttgcgaccgc gcctgcaggc
      301 tgctccgcgg ctgccgccag actcacgccg ggcgtgagcg tggcgcctgc gctccgcgtg
      361 tccggctgcc gtctcttcac agctggtccc ctcgcatgcc gagcccggcc cagctgcctg
      421 gtttaggcgc tgccgggtcc ggacgcgccc ggaggcgttc tgcgacggag ggcatgggcc
      481 cggcaccgct gcgggcgccg cccggcgctg tacctgccgg gtggagtctt cgcggccggc
      541 gcgaggcggg atcggccggc cgtgagtacc cagccggttt gcgggcagtc atctgccacc
      601 ttcgatcgag accagacgat gagctgccgc cgtgagcagc cgcgccttgg tgagtagacc
      661 ggccggccgg gccaaactca tcggccgtgg gcccgcggca gctcagcagc ggctgctgcc
      721 acttggtctc agaggatcat cgcaacaccc gtcccacggc ttgtcactat gtgagacgag
      781 agcgagttgc cactatgcga ggatctagcc acaggatcat ggggctggga agccgaaatg
      841 aggagttgtg ggcgggacag acggtgcacc gccagaggta cccatgctga cggttgccct
      901 tgatttgccg tcggcgcaga ttctcgccga tcaggcgggg atcattcaag atcttcaatt
      961 tgtcatggat tgctgcaagc ggctgctcac ggaactggct aaacccgagg aagaccggga
     1021 cggggttgtg ccgcaagcgc tctgggcctc tgccctgctg gcctacgctc gctgcttcag
     1081 caaaagcaag cgtttcgggc tcacaactga agatgtgcag aacctgcctc ttcatggggc
     1141 ggtgatgaaa ttccataaat gggttatcga ggaacgcaac aagctcactg ctcacccggc
     1201 agatccgctt gaggctgcga agatcggggc cgctctgtct ccccccgggc gggcgcagcg
     1261 gcaggtggaa ggtatcgcga tcttctcttc gagccatgtg ctcatcgatg ccatcggtgt
     1321 acggcagctg ggtggcctgg cgtcagaact ggcaaagcaa actgccgaga aagcacaaga
     1381 acagcaggac tcggtgctcg cagatgccca gcagctgaac atagacagct tgtacagatt
     1441 gccgccgctg cacatgcggc cacccaccgc cggcgctgcc ggagatgcgc cataggccag
     1501 ccagccaagc agtgcagaac ggccagatct ggatcgccgg gatcccaaca ggcgccgagc
     1561 cgacatcaac gcagatcggc ggatccggcg cgttaagcga caactggccg gacacgaagc
     1621 gtgacctcca gaatgagcgc gtttacaacg ggggtgtcca aacaaagcaa cgcacgattc
     1681 tgtctgattc gcgcccggat gtcgcagagc agcgatgtgt gtccacttta gtgcgcggcc
     1741 cagcggccgt agccgcgctc gtt
//
LOCUS       DASQCV010000507         3439 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_607072, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000507 DASQCV010000000
VERSION     DASQCV010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3439
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_607072"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1154)
                     /locus_tag="VEQ16_07730"
     CDS             complement(<1..1154)
                     /locus_tag="VEQ16_07730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HYP63761.1"
                     /translation="MRIWIDVEDLFQYAANTSRPSGIQRLAFELQRALLALAPDEVRF
                     VRHNASTKDFVAVPFADIAALFANLTATAPSRPAAAPALQEDGSPALPPAGPARRLGR
                     RVMARFSPEVASPLRRFRTHQVQALRDLRDAARIALRRNGFGPKDHIRPVAAETEPAF
                     KNCAAPGDWLLCLGSPWFMHDYAERISAACAQYGLRFAVLLYDIIPLRRPEWCDRNLV
                     KSFRVWFNNILPLADRLLSISRTTAEDVERYVVENDLVLRSHVQPIPLGTGFGEAPPP
                     VRSPRLPPAKTFALIVSTIEARKNHVLLFRIWRELLAVMPRDQVPTLVFAGRVGWLVA
                     DLMQQLENANWLDGKILLIEEPGDGELAALYEDCLFTLYPSLYEGWGLPVS"
     gene            complement(1245..2438)
                     /locus_tag="VEQ16_07735"
     CDS             complement(1245..2438)
                     /locus_tag="VEQ16_07735"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HYP63762.1"
                     /translation="MNILRTPELVEAGARSSVAATGRIGELEVLRTVAILMVLAAHVP
                     FNLLFWPSQYTNPLYRCGTWSGVDLFFAVSGFVIARSLLPQLEGVRDIQKFLDISVVF
                     WMRRAWRLWPSAWFWLAAPLVLSVLFNRSHVYGSLRANWCMAVAGVINLANFHVAYLD
                     SHQITDKGTAFVQWSLSLEEQFYMVLPFAALLFRRYLALPLFALLVLAFFMPGTALAW
                     MIRSGAVSAGVLLAIAARHPAYEDCAPVFLARHSAARIAVLVGGVTLMISIGATALNI
                     VPFLQGPIAILSGLLVWVASYGQGFLWKPGLSRQIMEIIAARSYSLYLVHIPVFFGMH
                     EMWFRLYTLAVPTHRQALIYFAATLVPLALITELNYRFLESPLREHGKILARRYAQRM
                     QTLAA"
     gene            complement(2435..>3439)
                     /locus_tag="VEQ16_07740"
     CDS             complement(2435..>3439)
                     /locus_tag="VEQ16_07740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63763.1"
                     /translation="ENWGGDPRDDWRVVLSEAGRAITHSRFAAQVVKGEMGKNYDIVS
                     LPAPVWDSFAPLYDPHRRLDWPAKPTTLTIRGRVYDTNQIDLGQFAPLVCPKHVTPTL
                     PDGCGERETEQQIMLDGVIYTSVFCPLDARKNWFDMIAGFCWGLRDCADATLVLKLTH
                     RECYGEIGGMLKDMAKLMPFRCRVVIIDGYLSDASYTELAKVSHYALNTSHGEGQCLP
                     LMEYMSAGKPAVTPLHTSMLDYVTEQNSFIMESHLEPTIWPHDPRKIYKTRRHRIDFE
                     SLLATYRESYLVAKTDPARYARMAQAAHEDLRAHCSRAVTKSKLAQFLAPHSAMALTA
                     "
BASE COUNT          709 a          990 c         1162 g          578 t
ORIGIN      
        1 gacaccggca gcccccagcc ttcatagagg gaggggtaga gggtgaagag gcaatcctcg
       61 taaagcgcgg cgagttcacc atcgccgggc tcctcgatga gaaggatctt gccgtcgagc
      121 cagttggcgt tttcgagctg ctgcatcaaa tcggccacaa gccagccgac gcgcccggca
      181 aacaccaggg tgggcacctg gtcgcgcggc atgacggcga gcagctcgcg ccagatgcgg
      241 aacaaaagca cgtggttctt gcgcgcctcg atggtggaga cgatgagcgc gaaggttttt
      301 gccggcggca ggcgcggcga acgcacaggg ggcggtgctt cgccgaagcc ggtgccgaga
      361 ggaatgggct gcacgtggct gcgcaaaaca aggtcatttt cgacgacgta acgttcaaca
      421 tcctccgcgg tggtgcggga gatggagagc agcctgtcgg ccaaaggcag gatgttgttg
      481 aaccagacgc ggaatgattt gaccagattg cggtcgcacc attccgggcg gcgcagcggg
      541 atgatgtcgt agagcagcac ggcaaagcgc agcccatatt gcgcgcaggc cgcgctgatg
      601 cgctcggcat aatcatgcat gaaccagggc gagccgaggc agagcagcca gtccccaggg
      661 gcggcgcaat tcttgaaggc cggctccgtt tccgccgcca cgggccttat atggtccttt
      721 ggcccgaaac cgttgcggcg cagggcgatg cgggcggcat cgcgcaaatc gcgcagcgcc
      781 tgtacctggt gggtgcggaa ccggcgcagc gggctcgcga cttccgggga aaaccgggcc
      841 ataacgcggc gcccgaggcg gcgcgcggga ccggccgggg gcagggcagg gctgccatcc
      901 tcctgcaggg caggtgcggc ggcagggcgg ctgggcgcgg tggcggtgag attggcgaac
      961 agggcggcga tgtcggcaaa gggaacggca acgaaatcct tcgtcgaggc attatgacgg
     1021 acgaaccgga cttcgtcagg ggcgagcgcc aacagcgcgc gctgcaactc gaaagccagg
     1081 cgctggatgc cgcttggcct gctcgtattg gcggcgtatt gaaacaggtc ttctacgtcg
     1141 atccaaatgc gcattttaaa tccggtaccc cgcgccagga ttggcgccta cccgtgaacg
     1201 ggtcaatctc cgatagatga ttccagccga ttctgacgag gatttcatgc agccagtgtt
     1261 tgcatccgtt gggcatagcg gcgggcgagt attttgccgt gttcgcgcaa ggggctttcc
     1321 agaaatcggt agttcagttc ggtaatcagc gccagcggta ccaaagtggc ggcaaaatag
     1381 atgagggcct gcctatgggt tggtacggcg agcgtataca gcctgaacca catctcatgc
     1441 atgccgaaaa agacggggat gtggacgaga tagaggctat aggaccgggc ggcgatgatt
     1501 tccatgattt gccgggataa tcctggtttc cagagaaatc cctggccata ggacgccacc
     1561 cagaccagca atccggacag aatcgcaata ggcccctgga ggaaaggcac aatattcagg
     1621 gccgtggcgc cgatgctgat catcagcgtc acgccgccca cgagaaccgc gatgcgggcg
     1681 gcgctgtggc gggccaggaa aaccggtgcg caatcttcat aggcggggtg ccgcgcggcg
     1741 atggccagca gcacgccggc ggagaccgcg ccgctgcgga tcatccaggc gagcgctgtg
     1801 ccgggcatga agaaggccag aacgagcaat gcgaagaggg gaagtgccag atagcgccgg
     1861 aacagcaatg ccgcgaaggg cagcaccatg tagaattgtt cctccagcga gaggctccat
     1921 tgcacgaaag cggttccctt gtccgtgatt tgatgcgagt ccaaatatgc gacatgaaaa
     1981 ttcgcaagat tgatgacgcc ggcaaccgcc atgcaccaat tcgcgcgcag gctgccatag
     2041 acgtgagatc ggttgaacag cacgctcagc accaaggggg cagccagcca gaaccaggcg
     2101 gagggccata ggcgccaggc ccggcgcatc cagaaaacca cggaaatatc caggaatttc
     2161 tggatgtcac gcacgccttc cagctgcggc agaagcgagc gggcgatgac gaagccggag
     2221 accgcgaaaa acagatcgac cccgctccag gtgccgcacc gatagagcgg attggtatat
     2281 tgcgagggcc agaagagcag gttgaatggc acatgcgccg ccagcaccat caggatcgcg
     2341 accgtgcgga gcacctcgag ttcgccgatg cgccctgttg ctgccaccga cgagcgtgcg
     2401 ccggcctcga ccagttccgg cgtgcgcagg atattcatgc ggtcagtgcc atggcgctgt
     2461 gcggtgccag gaattgcgcc agcttggatt tggtgacggc gcgggagcaa tgcgcgcgca
     2521 aatcctcgtg cgctgcctgc gccatgcggg catagcgggc cgggtcggtc ttggcgacca
     2581 gatagctttc gcgataggtg gcgagcaggg attcgaaatc gatgcggtgg cggcgggtct
     2641 tgtagatctt gcgcggatca tgcggccaga tcgtcggctc cagatgcgac tccatgatga
     2701 acgagttctg ctctgtcaca taatccagca tcgaggtatg gagcggggtc acggcgggct
     2761 tgccggcgct catatattcc atcaagggca ggcactgccc ctcgccatgc gacgtgttga
     2821 gcgcgtaatg gctgaccttc gccagttccg tataggaggc gtcagagaga tagccgtcga
     2881 tgatcaccac acggcagcgg aacggcatca gcttggccat gtccttgagc atgccgccaa
     2941 tctcgccata gcattcgcgg tgcgtcagct tcagcaccag cgttgcgtcc gcgcaatccc
     3001 gcaggcccca gcagaagccg gcgatcatgt cgaaccagtt cttgcgcgca tcgagcgggc
     3061 agaagacgga ggtgtagatc acgccatcga gcatgatctg ctgctcggtc tcgcgctcgc
     3121 cgcatccgtc gggcagggtt ggggtgacat gcttagggca gaccagcggc gcgaactggc
     3181 cgagatcgat ctggtttgta tcgtagacgc ggccgcgtat ggtgagcgtc gtcggcttgg
     3241 ccggccaatc caggcggcga tgggggtcgt agagcggggc aaaactgtcc cagacaggcg
     3301 ccggcaggct gacaatgtcg tagtttttgc ccatttcgcc tttcaccacc tgcgccgcga
     3361 agcgagaatg ggtgatggcg cgtcccgcct cgctcagcac cacgcgccaa tcatcgcgcg
     3421 ggtctccccc ccagttttc
//
LOCUS       DASQCV010000508         2095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3094788, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000508 DASQCV010000000
VERSION     DASQCV010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3094788"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VEQ16_07745"
     CDS             <1..305
                     /locus_tag="VEQ16_07745"
                     /inference="COORDINATES: protein motif:HMM:NF037627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HYP63764.1"
                     /translation="QQAAARDFIAGWQARAQRLVAEFRAETVHEAAAPARQALIESLT
                     RESTDFARFWQSHTVLAREGGARSFLHPQRGVLRYVQHNLIPAAHPGYRLVILTAA"
     gene            complement(313..1215)
                     /locus_tag="VEQ16_07750"
     CDS             complement(313..1215)
                     /locus_tag="VEQ16_07750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020593917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYP63765.1"
                     /translation="MSQIFDWDLLQSFLAVARTGRLTVAAKRLGVDHSTLSRRLVTLE
                     TALGAKLFNRALSGYSLTHQGEDLLARAESMESTALAIQTEVGQGRSQVSGTVRVGTP
                     DGFGTAFLAGVIHELTEAQPALQIDLVATPFGFSLSKREADIAVSLSRPAEGRVHVRK
                     LTDYRLGLYVAVSAPAAWRGVQSLEAAATLPFITYIDDLLYTPELDYAPPVLRGVEPR
                     LRSSTVVAQAAACAAGMGLCILPCFLADGDARLMRVLPEQVDMTRSFWMVVHSDLRDL
                     ARIRVTGDFIAEAVHRAAGRFLPG"
     gene            1312..>2095
                     /locus_tag="VEQ16_07755"
     CDS             1312..>2095
                     /locus_tag="VEQ16_07755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYP63766.1"
                     /translation="MREIGHFIGGKRVAGTSGRFADVYNPSTGQVQAKVALATAEELR
                     AAVENAKAAQPKWGATNPQRRARVLMKFLELLNKEYDSLAELLASEHGKTVPDAKGDI
                     QRGLEVVEFAIGIPHLLKGEYSDNAGTGIDVYSMRQPLGVVAGITPFNFPAMIPMWKF
                     APALACGNAFILKPSERDPSVPMRLAELLIEAGLPAGVLNVVNGGREVVDALIDDPRI
                     AAIGFVGSSAVAAHIYAGGCAKGKRVQCFGGAKNHMIVMPDAD"
BASE COUNT          391 a          732 c          643 g          329 t
ORIGIN      
        1 tccagcaggc ggcggcacga gattttattg ccggctggca agcccgcgcc caacgtctgg
       61 tggcggaatt ccgcgccgag acggtgcatg aggcagcggc cccggcgcgg caggcgctca
      121 tcgagagtct gacgcgggaa agcacggatt tcgcacgctt ctggcagagc catacggtgc
      181 tggcacgcga gggcggggcg cggagtttct tgcatccgca gcgcggggtg ctgcgctatg
      241 tgcagcataa tctcatcccc gccgcgcatc cgggctaccg gctggtgatt ctgacggcgg
      301 cgtgagaagg cttcaccccg gcaaaaaccg ccccgccgcc cggtgcacgg cctcggcaat
      361 aaaatccccg gtcacccgga tgcgcgccag atcgcgcaaa tccgaatgca ccaccatcca
      421 gaaactccgt gtcatatcca cctgttcagg cagcacccgc atcagccgcg catcgccatc
      481 cgccaggaag cagggcaata tgcacaaccc catccccgcc gcgcaggcag ccgcctgggc
      541 caccaccgtg gaggagcgca accgcggctc cacgccacgc aaaaccggcg gcgcgtaatc
      601 cagctccggc gtatagagca gatcgtcgat ataagtgatg aacggcagcg tggccgccgc
      661 ctccaaactc tgcacccccc gccacgccgc cggcgcagaa accgccacat acagccccag
      721 ccggtaatcg gtgagcttgc gcacatgcac ccgcccctcc gccgggcgcg acaggctcac
      781 ggcgatgtcc gcctcacgct tggaaagcga aaagccgaac ggcgtcgcca ccagatcgat
      841 ctgcaaggct ggctgcgcct cggtcagctc atggatgacc ccagccagga aggcggtgcc
      901 gaacccatcc ggcgtgccca cccttaccgt gccggagacc tggctgcgcc cctgccccac
      961 ctcggtctgt atcgccaggg cggtactttc catgctctca gcccgcgcca gcaaatcctc
     1021 gccctggtgc gtcaggctgt atcccgagag cgcgcggttg aataatttgg ccccgagcgc
     1081 agtctccagc gtcacaaggc gccggctcaa tgtgctatgg tcgacaccaa gccgtttggc
     1141 ggcaacggtc aaccgccctg tccgcgccac ggccagaaag gattgcagca ggtcccagtc
     1201 gaaaatttga ctcatgtgga ttcttgcacg atgggtttgg gaatctgagc ctaggtttgc
     1261 gcgtcaattc gtgcaacagg gctgcggaat acgagagagg aacttctatc catgcgtgag
     1321 attggacatt tcatcggcgg caagcgcgtt gccggcacgt ccggccgctt tgctgacgtg
     1381 tacaacccct ccaccggcca ggtgcaggcc aaagtggcgc tggccaccgc cgaagagctg
     1441 cgcgccgccg tggagaacgc caaggccgcc cagcccaaat ggggcgccac caacccgcag
     1501 cgccgcgccc gcgtgctgat gaagttcctc gagctgctca acaaggaata tgacagcctg
     1561 gccgagctgc tggcttccga gcatggcaag accgtgcccg acgccaaggg cgacatccag
     1621 cgcggcctgg aagtggtgga attcgccatc ggcatcccgc acctcctcaa gggcgagtat
     1681 tccgacaatg ccggcacggg catcgatgtc tattccatgc gccagccgct cggcgtcgtc
     1741 gccggcataa cgccgttcaa cttcccggcc atgatcccga tgtggaagtt cgcgccggcg
     1801 ctcgcctgcg gcaacgcctt catcctcaag ccttccgagc gcgacccgtc ggtgccgatg
     1861 cggctcgccg aattgctgat cgaggccggg ttgccggcgg gcgtgctcaa cgtggtcaat
     1921 ggcgggcgcg aggtggtcga tgcgctcatc gacgacccgc gcatcgccgc catcggcttt
     1981 gtcggctcct ccgcggtcgc cgcgcacatc tacgcgggcg gctgcgccaa aggaaaacgc
     2041 gtgcagtgct tcggcggcgc caagaaccac atgatcgtca tgccggacgc cgatc
//
LOCUS       DASQCV010000509         1556 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3259458, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000509 DASQCV010000000
VERSION     DASQCV010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3259458"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VEQ16_07760"
     CDS             <1..196
                     /locus_tag="VEQ16_07760"
                     /inference="COORDINATES: protein motif:HMM:NF017771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF899 family protein"
                     /protein_id="HYP63767.1"
                     /translation="EELPGISVFYQHAAGAVFHTYSCYARGLDMMNATYHYLDLVPKG
                     RDESGPHKMAWVRYRDSYTG"
     gene            303..875
                     /locus_tag="VEQ16_07765"
     CDS             303..875
                     /locus_tag="VEQ16_07765"
                     /inference="COORDINATES: protein motif:HMM:NF017771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF899 family protein"
                     /protein_id="HYP63768.1"
                     /translation="MSYKHTAEKLADYRRQIRELRQNMRDVQAAVEPEPVKDYTFRRA
                     GGGSVRLSEMFGDKTDLFVIHNMGQSCPYCTLWADGFNGAYAHLSNRAAFVVSSPDTP
                     EKQRKFAESRHWTFPMVSHEGTTFAEDMGFRQDGGWMPGVSVFRRQNGGIVRVSDAPF
                     SPGDDFCSVWHFWDLIPEGAAGWQPKYKYA"
     gene            1292..>1556
                     /locus_tag="VEQ16_07770"
     CDS             1292..>1556
                     /locus_tag="VEQ16_07770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63769.1"
                     /translation="MAVTIGRRDLLAALGGAAAVWPLAAHAQQRERVRCNRRAYAARA
                     RQSGRPLRIAALLQELELLGWTAGRNVEIDVRLAGRAAAAGKNN"
BASE COUNT          285 a          481 c          507 g          283 t
ORIGIN      
        1 ggaagagttg ccgggcatca gcgtgttcta ccagcacgcg gccggcgccg tcttccacac
       61 ctattcgtgc tacgcgcgcg gcctcgacat gatgaacgcc acctatcatt acctcgatct
      121 cgtgcccaag ggacgcgacg agtccgggcc gcacaaaatg gcctgggtgc gctaccgcga
      181 tagctacact ggctgatgtg aaccatgaca tggagccgtc attccgatgc gattccttcc
      241 cccggtcatg acggcgtggg acaggcctgc cccaaaagaa cctgcgtatg aggagtgaag
      301 ccatgagcta taaacacacc gcagaaaaac tcgccgacta ccgccgccag attcgcgagc
      361 tgcgccagaa catgcgcgac gtgcaggcgg cggtcgagcc ggaacccgtg aaggactaca
      421 cgttccggcg cgcgggcggg gggagcgtgc ggctttccga gatgttcggc gacaagaccg
      481 atctgttcgt tatccacaac atgggccaga gctgtcccta ttgcacgttg tgggcggacg
      541 ggttcaacgg cgcctatgcg catctgagca accgcgccgc gttcgttgtc tcctcgcctg
      601 acacaccaga gaagcagcgg aagttcgcag aaagccggca ttggacgttt cccatggtgt
      661 cgcacgaggg gaccacgttc gccgaggaca tgggtttccg tcaggacggc ggctggatgc
      721 cgggcgtctc cgtgttcagg cgccagaatg ggggaatcgt gcgggtgtcc gatgcgccat
      781 tctcgcctgg cgacgatttc tgcagcgtct ggcacttctg ggatctcatt cccgaaggcg
      841 ccgctggctg gcagccgaag tacaagtacg cgtgagagta cggcagggct gccgcgctgc
      901 ggaatttcga cccagcctat gaccgctgtg ggtcattcac gtcattccca ccatcccggc
      961 gtgtccggtt cgctccaaga gcggatattc ggccaatgcc cgctttagga gtacgcgccc
     1021 taatttaaaa gaagaagcgg cctcgccacc ttgaccggta atgctagcta atctgcgcgc
     1081 accggaggtt ggcttgccgt tattgggcgg gccgcgtcgc cctcagagaa aaccgcgcgc
     1141 ccacacatcg tctcaccgct ccgagacgaa gtgaagcggg cgctccgctg taccgacgta
     1201 cgcccacgcg gccatgggtg ccgcgctgtt agggacagca cgctcgtggc gtggtatcgt
     1261 tccctttacg cacctcgcac gggaggggcg tatggcagtc accatcggac ggcgggactt
     1321 gctggctgca ctcggcggcg cggcggcggt atggccgctc gcggcgcacg cgcagcagcg
     1381 cgagcgcgtg cggtgcaatc ggcgtgctta cgccgcacgc gcaagacaat ccggtcgacc
     1441 tcttcgtatc gcggcgttgt tgcaggagct agagctattg ggctggaccg ctggccggaa
     1501 tgtggagatt gatgttcgtc tggcggggcg cgcggcggcc gccggcaaga ataact
//
LOCUS       DASQCV010000510         1705 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3259847, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000510 DASQCV010000000
VERSION     DASQCV010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3259847"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..471)
                     /locus_tag="VEQ16_07775"
     CDS             complement(46..471)
                     /locus_tag="VEQ16_07775"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP63770.1"
                     /translation="MSGLAMGAVLQIGTAMADLASIHPWLDEAAGPDLPATLLNAMHV
                     ALEEAVMNIAMHGYGQGEGVIALRFDREGETVLLTLEDTARPFNQAEAPPPPQAASLE
                     KASIGGRGLKLLRHYCKDIGYEHVGGRNRLKLRFPLLAA"
     gene            complement(472..813)
                     /locus_tag="VEQ16_07780"
     CDS             complement(472..813)
                     /locus_tag="VEQ16_07780"
                     /inference="COORDINATES: protein motif:HMM:TIGR00377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HYP63771.1"
                     /translation="MAISIIELDGNVTKAVLSGRIDIAGAGEIDMPLSLLGGTRRAVI
                     VDLSGVEFMASLGLRSIVMSAKAIFSKGGKAVLLSPQPAVEEVITVSGVDELIPITRS
                     EAEALLAVTAG"
     gene            978..>1705
                     /locus_tag="VEQ16_07785"
     CDS             978..>1705
                     /locus_tag="VEQ16_07785"
                     /inference="COORDINATES: protein motif:HMM:NF028007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HYP63772.1"
                     /translation="MSDADESTGDKTMIRMVVKSEEAVPAFGHFLTYEQDGETIRVAI
                     EGEMTIGRVAPSDIVIPNPEISRQHCRIRLQGDWALLSDLGSTNGTYADGQRLERPTR
                     LQDGSRLNLGSFSLRYERRELAALAQEAELQADLQRAEAYVRAILPAPLAEGPVQAAW
                     HFTPSAKLGGDAFGYQFLENGIFTGFLLDVSGHGIGSAMHAANVANSLRRRGLPGVDF
                     ADPAQVAAGLNAMFPMEEHNGLMLT"
BASE COUNT          305 a          508 c          574 g          318 t
ORIGIN      
        1 gagccgcccg tgcccagtgg caggctggga aaaagagggg aaacgctacg ccgcgagcag
       61 cggaaaccgc aatttcagcc ggttacgccc gccgacatgc tcgtaaccaa tatccttgca
      121 ataatgccgc agcaatttca gcccgcgccc gccgatgctg gctttttcca ggctggcggc
      181 ttggggcggg ggcggggctt cggcctggtt gaaggggcgc gcggtgtctt caagcgtcag
      241 cagcactgtt tcaccttcgc gatcgaaacg cagcgcgatc acgccttcgc cctggccgta
      301 gccatgcatg gcgatgttca tcaccgcctc ttccagcgcc acatgcatcg cgttcagcag
      361 cgtggccggc aggtccggcc cggcggcttc gtcgagccag ggatggatgg aggctaggtc
      421 cgccatggcg gtgccgatct gcaggaccgc gcccatggcg aggccggaca ttcagccggc
      481 cgtgacggcg aggagcgctt cggcctcgct gcgtgtgatg gggatcagct catccacgcc
      541 ggacacggtg atgacctctt ccaccgccgg ctgcggcgag agcagcacgg ccttgccgcc
      601 tttgctgaaa atggctttcg cgctcattac gatgctgcgc aggccaagag aggccatgaa
      661 ctcgacgccc gagagatcga cgatgacggc gcggcgcgtg ccgcccagca ggctcagcgg
      721 catgtcgatt tccccggcgc cagcaatatc gatgcgcccg gacagcaccg ccttcgttac
      781 attgccgtca agctcgatga tgctgatcgc catcccattg ccccttgttg aaatccaaga
      841 acccgaatat tgccggattt ttaggaatgg cagaggcctt ccgcgccatc aaggccgggt
      901 ggccggggct aaggcgaatt tggcgtggat tttcatgaca atttgatgtc aattccgtga
      961 aggcggatga ggtggcgatg agcgacgcgg acgagagcac gggcgacaag accatgatcc
     1021 gcatggtcgt gaagagcgag gaagcggtcc cggccttcgg gcatttcctt acctatgagc
     1081 aggatggcga aacaatacgt gtggcgatcg agggcgagat gaccatcggc cgcgtggcgc
     1141 cgagcgatat cgtgattccc aacccggaaa tctcgcgcca gcattgccgc atcaggctgc
     1201 agggggactg ggcgctcttg agcgatctcg gctcgaccaa cggtacctat gcggatgggc
     1261 aaagactgga gcggccgacc aggctgcaag acggcagtag gctcaatctc ggttcctttt
     1321 cgttgcgtta cgagcggcgc gagctggccg ccttggcgca ggaggcggag ttgcaggcgg
     1381 atttgcagcg cgccgaggcc tatgtgcgcg ccatattgcc cgcgccgctt gccgaggggc
     1441 cggttcaggc ggcgtggcat tttaccccct ctgccaagct ggggggcgat gcattcggct
     1501 accagtttct ggagaacggg atttttacgg gcttcctgct cgatgtctcg ggtcatggca
     1561 ttggctcggc catgcatgcg gccaatgtgg cgaattccct gcgccggcgc gggctgccgg
     1621 gggtggattt cgccgacccg gcgcaggtgg cggcgggatt gaatgcgatg ttccccatgg
     1681 aggagcataa cgggctgatg ctcac
//
LOCUS       DASQCV010000511         1658 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2762883, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000511 DASQCV010000000
VERSION     DASQCV010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2762883"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VEQ16_07790"
     CDS             complement(<1..485)
                     /locus_tag="VEQ16_07790"
                     /inference="COORDINATES: protein motif:HMM:NF016200.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease subunit"
                     /protein_id="HYP63773.1"
                     /translation="MTGWLRCTDHAVGAAISAGQWLVLPVSFLLFAQWPLRDLVHAYA
                     TQANDLAQWMFALYVSLALTFATRERTHLASDSFAYRYSPKTRSRIARIGGFICVAPW
                     ALFILLVSVPAVWQSIRGLEKFPETYDPGYFIIKGATWLLALLALAQAVLGVRHRETP
                     S"
     gene            complement(619..>1658)
                     /locus_tag="VEQ16_07795"
     CDS             complement(619..>1658)
                     /locus_tag="VEQ16_07795"
                     /inference="COORDINATES: protein motif:HMM:NF028290.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HYP63774.1"
                     /translation="PGVNTALLAISTAVSSCIGTPGASMLMLRPLLRANRHRPSAAHV
                     YVFYIFLVCNIGGALTPLGNPPLFLGYLRGVPFFWPVVHLFVPTVTVAASVLAVFYAV
                     DRHIYRRHPKPGETLAEIEKLTVAGGVNLLLLLGAALTMMLRSFCSLPGALDLLGVRW
                     SFDDILADVLFLLLGALSLLLTHPATRQENEFVWTPIREVSIVFAGIFVTLIPVDAIM
                     AAGQAGPGYALFNAMFEGGAPVVPLFYLLSGALSSVLDNAPAYLVFFGLAGDDAKLLT
                     GPMALTLTAISAGASYFGAMTYIGNAPNLMVKSIVESYGIKMPNFFAYMAWSSLCLLP
                     LLLAAMALFFR"
BASE COUNT          363 a          507 c          533 g          255 t
ORIGIN      
        1 cagcttggcg tttcgcggtg ccgaacaccg agcaccgcct gggcgagcgc gagcagcgcc
       61 agaagccagg tcgcgccctt gatgatgaaa tagcccgggt cgtaggtctc gggaaacttc
      121 tcaagcccgc ggatcgattg ccaaaccgcc ggaaccgaaa ccagcagaat gaaaagcgcc
      181 cagggtgcga cgcagataaa tccgccgatc cgggcaatgc ggctgcgcgt tttcggcgaa
      241 tagcggtacg cgaaggagtc ggaggcgaga tgcgtgcgct cgcgcgttgc aaaggttaag
      301 gccaggctga catagagggc gaacatccac tgcgccaggt cgttcgcctg ggtcgcatat
      361 gcgtgcacca ggtcgcgcaa cggccactgc gcaaagagca gaaagctcac cggcagcacc
      421 agccactgcc cggccgatat ggccgcccca accgcatgat ccgtgcatcg aagccagccc
      481 gtcattccgg tcgccttttg tcgattttgc tccttattat gcgtttcggc ccggtaagga
      541 caggtccatg tatctgtcgg tccgcgtttt cccgcattgc cgcgtcgtgc gacgaaaccg
      601 cgtgctggcg cgcaagcgct agcggaagaa cagcgccatt gccgccaaga gcagtggcag
      661 caggcagagg ctcgaccagg ccatgtaggc gaagaagttc ggcatcttga tgccatagct
      721 ctcaacgatc gatttaacca tcagattggg ggcgttgccg atatacgtca tagcgccgaa
      781 atagctggcc ccggccgaga tcgcggtcag tgtcagtgcc ataggaccgg tgaggagctt
      841 ggcatcgtcg ccggccagcc cgaagaacac caggtaagcc ggcgcgttat cgagcaccga
      901 ggagagcgcg ccggacaaga gatagaacag cggcaccacc ggcgcgccgc cctcaaacat
      961 ggcattgaac agggcatatc ccggcccagc ctggcccgcc gccatgatgg cgtcgaccgg
     1021 gatcagcgtg acgaagatcc cggcgaacac gatcgagact tccctgatcg gtgtccagac
     1081 aaattcgttc tcctgccgcg tcgccggatg ggtgagaagc aaagatagcg cgccgaggag
     1141 gaggaacagc acgtcggcta ggatgtcgtc gaagctccaa cggacgccca acaggtcgag
     1201 cgcgccgggc aaggagcaga agctgcgcag catcatagtg agcgccgcgc ccagcagcag
     1261 cagtaggttg acgccaccgg cgacggtcaa cttctcgatc tccgccagtg tctcgccagg
     1321 tttcggatgc cgccggtaga tatggcggtc gacggcatag aacaccgcga gcaccgatgc
     1381 tgccaccgtt accgtcggca cgaacaagtg taccaccggc cagaagaatg gtacgcccct
     1441 gagataaccc aagaacagag gcggattgcc gagcggcgtc agcgcgccac cgatgttgca
     1501 gaccaggaag atgtagaata catagacatg cgccgcgctc gggcggtggc ggttggcgcg
     1561 cagcagcggc cgcagcatca gcattgaggc gcccggcgtg ccgatgcagc ttgacaccgc
     1621 cgtgctgatt gccaagagcg cggtgttgac gccaggcg
//
LOCUS       DASQCV010000512         1640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_442075, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000512 DASQCV010000000
VERSION     DASQCV010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_442075"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1640)
                     /locus_tag="VEQ16_07800"
     CDS             complement(<1..>1640)
                     /locus_tag="VEQ16_07800"
                     /inference="COORDINATES: protein motif:HMM:NF014731.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015079 - potassium ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="KUP/HAK/KT family potassium transporter"
                     /protein_id="HYP63775.1"
                     /translation="AILGALSLILWTLIIVTSLKYVTLALRVDNGGEGGILALMALLR
                     RKYERRQPLIMFIGLFGAALVYGDAAITPAISVMSALEGLNIVAPDLQRYVLPATVAL
                     LIALFAAQQQGTERIGRLLGPVMLIWFVIIALLGLWGITKHPAVLWALNPTVGLSYLL
                     AGHGLTTLLVVGGVFLCVTGAEALYADLGHFGRAPIRLAWSCLVFPALILNYAGQAAY
                     VLAGAPAEGNIFYHLCPAPLLLPLVILAAVATIIASQAVITGAFSMTRQAIQLGLLPR
                     LQIIQTSAAGHGQIYLPAVNWLLMAVTLGLAISFGSSSGLAAAYGIAVSATMLATTVL
                     LSIAMREIWSWPLPAVIVIGIGFAAVDGGFLSANMLKLAQGGWVPLLLGTLICCVMLV
                     WQKGSAAVQKQVDEMQIPITNIVAQLASGDIPRVPGTAVFLARITRDIPPIVVWHLRH
                     IRSLHGSIVIANVVTELVPYVAAEERVDVQEIAPQVWRVHVHFGFMEQPDIPALLQRA
                     QAKGYPVDASNATYFIGRETVVRREDGGALPRLAQSTF"
BASE COUNT          356 a          524 c          489 g          271 t
ORIGIN      
        1 gaacgtgctc tgcgccaggc gtggcagcgc cccgccatcc tcgcgtcgca caaccgtttc
       61 gcgcccgata aaataggttg cattggaggc atccaccggg taacccttcg cctgagcgcg
      121 ctgcagcaag gctgggatat ccggctgttc catgaagccg aaatggacgt ggacgcgcca
      181 cacctgcggg gcgatctcct ggacgtcgac ccgctcctcg gctgctacgt aaggaaccaa
      241 ctcagtgacg acgttagcga tcacgatcga accgtgaagc gatcggatgt gtctgaggtg
      301 ccataccacg atcggcggaa tgtcccgcgt gatgcgagcc aggaagaccg cggtgccggg
      361 cacgcgcgga atgtcgccgc tggcgagctg ggccacaata ttagtgatcg gaatctgcat
      421 ttcgtccact tgtttttgta ctgcggcgct acccttctgc cagaccagca tcacgcagca
      481 aatcaacgtg ccaagcagga gcggcaccca cccgccctga gcgagcttca acatattggc
      541 ggacaaaaat cctccgtcga ccgccgcaaa cccgatgccg atcacgatca ccgccggcaa
      601 cggccagctc caaatctcgc gcatggcgat ggacaggagg acggtggttg ccagcatcgt
      661 cgccgacact gctattccat aggcagcggc gaggccgctt gagcttccga agctaatcgc
      721 caggccgagt gtcaccgcca taagaagcca gttcaccgcg ggcaggtaga tttggccatg
      781 gcccgcggcc gaggtctgga tgatctgaag tcgcggcaac aggcctagct ggatcgcctg
      841 gcgtgtcatc gagaatgcgc ctgtgataac cgcctggctg gcgatgatcg ttgcgacggc
      901 ggccagtatc acaagcggca gcagcagggg cgcggggcag aggtggtaga agatgttccc
      961 ttctgccggt gcaccggcca atacgtacgc cgcctgtccc gcataattca ggatcagcgc
     1021 cgggaaaacc aagcaggacc aggccagcct aatcggcgct cggccgaaat gacccaggtc
     1081 ggcatacagc gcctccgccc cggtcacaca aaggaacaca ccaccgacga ccagcaaggt
     1141 ggtaaggccg tggcctgcca acaggtagct cagacccact gtcggattta gggcccacaa
     1201 gaccgccgga tgctttgtta ttccccacag tccgagcagt gcgattatca caaaccagat
     1261 caacatgacg ggccctagca gccgaccaat gcgctctgtg ccctgctgct gcgccgcaaa
     1321 cagcgcgatt aggagcgcca cggtcgctgg cagcacgtag cgctgcaggt caggtgctac
     1381 gatgttcagc ccctccagcg ctgacatcac cgaaattgcc ggcgtgatcg cagcatcgcc
     1441 atacaccagc gccgcgccga acagaccgat gaacatgatc agcggttggc gccgctcgta
     1501 ctttcggcgc aaaagcgcca tcagtgcgag aatgccgcct tcaccgccat tgtctacgcg
     1561 caaggcgagg gtgacgtatt tcagcgaggt gacgatgatc agcgtccaca ggatcagcga
     1621 cagcgccccg aggattgccg
//
LOCUS       DASQCV010000513         2081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2929382, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000513 DASQCV010000000
VERSION     DASQCV010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2929382"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..209)
                     /locus_tag="VEQ16_07805"
     CDS             complement(<1..209)
                     /locus_tag="VEQ16_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012553854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP63776.1"
                     /translation="MSRILARFQGAFGTFQLDAALDIPAAGITGLTGPSGCGKSTLLR
                     CLAGLARLPGGRVQLGEECWQDRGF"
     gene            complement(206..874)
                     /gene="modB"
                     /locus_tag="VEQ16_07810"
     CDS             complement(206..874)
                     /gene="modB"
                     /locus_tag="VEQ16_07810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014415541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HYP63777.1"
                     /translation="MLGPALILTLELAGLTTSILLIIGIPLAWLLAQARGIWVEAAGA
                     VVTLPLVLPPTVLGFYLLILLGPHGPLVPLLTAFGLTTLAFSFPGLVIGSVVYSLPFM
                     VQPVRAAFAAQGNGAWEAALTLRANPRDAFFSIALPLARGGIATGAILAFAHTLGEFG
                     VVMMIGGDIPGKTEVLSILIFNDVENLEWVRAGQISAGLAAFSFLVILVTLLLGRRAA
                     HGRA"
     gene            complement(882..1664)
                     /gene="modA"
                     /locus_tag="VEQ16_07815"
     CDS             complement(882..1664)
                     /gene="modA"
                     /locus_tag="VEQ16_07815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014198585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HYP63778.1"
                     /translation="MKTNLTLLGRRLAAALTLAAIATLAALPAPARAASTLVAVAANF
                     TAPATRLAASFQLKTGDNVVLSFGSSGQFLTEITQGAPYAAFLSADTARPQKLVAMGL
                     AEPSSLFTYAIGKLVLFSAKPGFVDAQGKVLSSGNFTHIAIADPKAAPYGTAAIETLK
                     TLNLYDTLSAKIVTGKSIAQAYQFTASGNAELGFVALSQVINNKAGSQWLVPAADYKP
                     IVQDAVLLKAGASDAVAQAFLAYLKTPEAQAMIRSYGYATAP"
     gene            complement(1816..>2081)
                     /locus_tag="VEQ16_07820"
     CDS             complement(1816..>2081)
                     /locus_tag="VEQ16_07820"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYP63779.1"
                     /translation="GAGTKLLAAILAADETLSHKCEGKAACGTCHIFVQDGRKGLSKI
                     GREENERLDTIVGVGSKSRLACQAEFLGTENVRIELLGFGSGL"
BASE COUNT          418 a          608 c          716 g          339 t
ORIGIN      
        1 aaaaacccgc gatcctgcca gcattcctcg ccgagctgta ccctgccacc cggcaggcgc
       61 gcgagcccgg ccaggcagcg cagcagcgta ctcttgccgc agccggaagg gcctgtgagg
      121 ccggtaatgc cggcggcagg aatgtccagc gccgcatcaa gctggaaggt gccgaatgcc
      181 ccctggaacc tcgcgagaat ccggctcatg cgcggccatg cgccgcacgc ctgccaagca
      241 gcagcgtaac cagaatgacg aggaaggaga aggcggcgag ccctgcggag atctgcccgg
      301 cccgcaccca ttcgaggttt tcgacatcgt tgaagatgag gatggagagc acctcggttt
      361 tgcccggtat gtcaccgccg atcatcatca ccacgccgaa ttcgcccagc gtatgtgcga
      421 aagcaaggat ggcgccggtg gcgatgccgc cgcgcgccag cggcaaggcg atggaaaaga
      481 aggcatcacg cgggttggcg cgcagggtga gggcggcctc ccatgcgccg ttgccctggg
      541 cggcgaaggc ggcgcggaca ggctgcacca taaaggggag cgaataaacg accgagccga
      601 tgacaagacc aggaaaggag aaggcgagtg tggtaagacc aaaggcggtc aacagcggca
      661 ccagcggtcc atggggcccg agcaggatca aaaggtagaa gccgagtacg gtgggcggta
      721 gtaccagcgg cagtgtaacg acggcaccgg ccgcctcaac ccagatcccc ctggcctgtg
      781 cgaggagcca agccaagggg atgccgatga tcaaaaggat ggaggtggta agtcccgcca
      841 actccagcgt caggataagg gcgggaccca acatggttac attacggcgc ggtggcgtag
      901 ccgtaggaac ggatcatggc ctgcgcctcg ggtgttttga gataggcaag gaacgcctgg
      961 gccaccgcat cggacgcgcc ggctttcagc aagacggcat cctgaacgat gggtttgtag
     1021 tcagccgccg gcaccagcca ttgcgagccg gctttgttgt tgatgacctg cgacagtgcc
     1081 acgaaaccaa gctcggcatt gccgctggcg gtgaattgat aggcttgagc gatgctcttg
     1141 ccggtgacga tcttggcgga cagcgtatca taaagattga gagtcttgag cgtctcaatg
     1201 gccgctgtgc catagggggc ggccttgggg tcggcaatgg cgatatgggt gaaattgccg
     1261 ctgctcagca ccttgccttg cgcatccacg aagccgggct tggcgctgaa caaaacgagc
     1321 ttgccgatgg cataggtgaa caggctggag ggctctgcca gccccatggc gacgagcttc
     1381 tgcggccgcg cggtatcggc cgaaaggaag gcggcatagg gggcgccctg ggtgatctcg
     1441 gtcaggaact ggccagagga gccgaagctg agcacgacat tatcgcccgt cttgagctgg
     1501 aaggacgccg ccagccgcgt cgcgggcgct gtgaagtttg ctgccacggc gaccaatgtg
     1561 gaggcggcac gcgccggcgc cggcagtgca gccagcgtgg cgatggcggc cagggtcaat
     1621 gctgcggcca ggcgccggcc caagagggta aggttcgttt tcatgcaatg ctccggtgag
     1681 aattctggtg atggatcggc attgataacg tccgttctct gtatcgggcg atatgcgcgc
     1741 gcgccggcgc cgaaagatgt cgcttgtgta tcttcggcgc cgcgctgaat tgtcgggatt
     1801 gcgacaaacc ggcgcctaca gcccggagcc gaagccgagc agctcgatcc tgacattctc
     1861 ggtgccgaga aattccgcct ggcaggcaag gcgcgatttg gagccgacgc cgacgatcgt
     1921 gtcgagccgc tcgttttcct cacgcccgat cttgctcagc cccttgcgcc cgtcctgcac
     1981 gaagatgtgg caggtgccgc aggcggcctt gccctcgcat ttatggctca gcgtttcatc
     2041 ggcggcgaga atggcggcaa gcagcttggt gccggcgccg a
//
LOCUS       DASQCV010000514         1796 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_274625, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000514 DASQCV010000000
VERSION     DASQCV010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_274625"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1796
                     /locus_tag="VEQ16_07825"
     CDS             <1..>1796
                     /locus_tag="VEQ16_07825"
                     /inference="COORDINATES: protein motif:HMM:NF024795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Hint domain-containing protein"
                     /protein_id="HYP63780.1"
                     /translation="FSGAGAVANLGTIEGNNGTGVVLAGGGSLVNGASTNVSAFIYGN
                     LGGVSLEAGGTVVNYGRIVTSAGRGSRNGVGVSDGGLVVNSGEISGFNGIGAGTGTVE
                     NSGQISGGSVLQIAIPFAGYTYVSGAGIVLVGGTLQNAGTVKGGSILSFPADHVGTAG
                     AGVTLDAGLVVNSGSISGGAAVGYALTGGTGVLAVTGTVTSNGRISGGTAYHGGDGLM
                     VLSGAYVQNSGTIQGGAGTFGGAGVLLEGGTLQNNGSIAGGDGTSWNWAPGLAAGVDI
                     YTGLFINNGAVAGGAQQHVGIDLGVGTLRNFGTISGAIGVLEQSGFIENEGFIQGAGV
                     AVEIWTGTLVNAGTLAGHYAVYMTSAAQKLVADPGAAFQGRVVAKGTAAALELANGTG
                     TLDMGTSFSGFATIALDQGGSWDLAGGIAQLAGGEVIAGFKQDDTLELEGFTASSATY
                     VSGLGLELSNGASMVTLGITGGFPTYAFTATPDATGTRIAICYARGTRIMTVQGERPV
                     EALDIGDELPTYFAGAKRVKWVGRQRFTAAELKGDRSRLPVRIKAGALCGGLPRRDLV
                     ISPGHSVLIDGVLVLAKCLVNGITITQDEPVR"
BASE COUNT          314 a          516 c          622 g          344 t
ORIGIN      
        1 tttttcaggc gcaggtgccg ttgccaatct cggcactatc gagggcaata acggcacagg
       61 cgtcgtgctg gcgggtggtg gcagcttggt caatggcgcc agcaccaacg taagcgcatt
      121 catctacggc aatttgggtg gggtaagtct ggaagcgggc ggcaccgtgg ttaattacgg
      181 gcgcattgtc acgtccgcgg gcagagggtc gcgcaacggc gtcggcgtca gtgatggagg
      241 cttggtcgtc aatagcggcg agatttccgg cttcaatgga atcggcgccg gtacaggcac
      301 ggtggagaat agcggacaaa tctccggcgg ctcagtcctg cagatcgcca ttccctttgc
      361 cggctacacc tatgtttcgg gagccggaat cgtacttgtg ggcggaacgc tgcagaatgc
      421 cggtaccgtc aagggcggca gcattctgtc atttcctgct gaccacgttg ggacagcagg
      481 cgcaggcgtt acgctcgacg ccgggcttgt cgtgaattca ggcagcatct ctggcggtgc
      541 ggcagtgggc tatgccctga ccggtggcac tggcgtgctc gctgtcaccg gcacagtcac
      601 cagtaacggg cgtatttccg gcggtaccgc ctatcatggg ggcgacggcc tcatggttct
      661 gagtggtgcc tatgtgcaga atagcggcac cattcaaggg ggcgctggaa cgttcggcgg
      721 cgccggtgtg ctgttggagg gcggcacgct gcagaataac ggcagcatcg ccgggggcga
      781 tggcaccagc tggaactggg caccgggcct ggccgctggc gtggatatct atacgggatt
      841 gttcatcaat aatggcgccg ttgccggcgg tgctcagcaa catgtcggca tcgatctcgg
      901 tgtcggaacg ttgcggaatt tcggcacaat ctcgggcgcc ataggtgtgc ttgagcagtc
      961 tggcttcatc gagaatgagg ggttcatcca aggggcaggt gtggcggtcg agatctggac
     1021 cggcacgctg gtgaatgcgg gcacgttggc cggtcattac gcggtctata tgacgtcggc
     1081 ggcgcagaag ctggtggcag accccggcgc ggccttccag ggcagggtgg ttgccaaagg
     1141 caccgctgcc gcgctggagc tggccaacgg cacaggcacg ctcgatatgg gaacgagctt
     1201 ctccggcttt gccaccattg ccctggacca gggcggaagc tgggatctgg cgggtggcat
     1261 tgcccagctc gcgggcggcg aggtgattgc cggcttcaag caagacgaca cgctcgaatt
     1321 ggaaggtttc accgccagct cggccaccta tgtatccggc ctggggttgg aactgtccaa
     1381 cggcgccagc atggtcacgc tcggcatcac gggcgggttt cccacctacg cgttcacggc
     1441 cacgccggat gccaccggca cacgcatcgc catctgctac gcgcgcggca cacgcatcat
     1501 gacggtgcag ggcgagcggc ccgtcgaagc gctcgacatc ggcgatgagc tgcccaccta
     1561 ttttgcgggc gcaaaacgcg tgaaatgggt cggccggcag cgtttcacgg cggcggaact
     1621 gaaaggcgac cgctcccgcc tgcctgtgcg catcaaggcc ggtgccctat gcggcggttt
     1681 gccccggcgc gatcttgtca tctcgccagg ccattcggtg ctcatcgacg gcgtgctggt
     1741 gctagccaaa tgtctagtca atggcatcac cattacccag gacgagccgg tgcggg
//
LOCUS       DASQCV010000515         2287 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1107178, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000515 DASQCV010000000
VERSION     DASQCV010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1107178"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1294
                     /locus_tag="VEQ16_07830"
     CDS             <1..1294
                     /locus_tag="VEQ16_07830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63781.1"
                     /translation="GHDPAAPLRRDPPPGATPPPAAAPPPATAPQPAVADDPLVQKFL
                     IGQATPADQAALQQKFKANQISAKDLKLLSDFAQAKFAEEFRKAITAQITSLTGGTPP
                     AGKSDGGLSGNVQIGPGGVSGNLNIGGGTITLGGPSPDTSGAYHTYLKTSLRVSMAGA
                     AKDVAEGLAGSVDTMIEVNAAAGADSGTITLNPPGGDTALAKNIVAAAFPTGAIKLPI
                     EASLLKWIRRGNILGTVSLTVSGPGGSPGPGLSLQTELLPKGVTLTLSISQSSDRPTL
                     APSTGDPALPGPRVFGTVGGGSSGGKPAGVATVGFDLPLVTDTAHPYIYGGLGLRGTA
                     DTTGSLAGLGAGIVGLHISPITLQLAIEAGIGRAAPGTGAAGSTAGTGQATFASGAEG
                     SVSYKILQHVEIMALASVLGGTHMPAAGTLQAGIGGVF"
     gene            complement(1653..2093)
                     /locus_tag="VEQ16_07835"
     CDS             complement(1653..2093)
                     /locus_tag="VEQ16_07835"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HYP63782.1"
                     /translation="MQGGHLPFVLDAFCDDIQLERRGNHQEARDDGARLRRLVAFGIL
                     TRMPDPEGSKYPEYRLTEKGADLATTLIALMQWGDHWASPPAGPPVEVIELATGEPIA
                     KLEIRNRKGRALSLAELSYRKRASEVADHAPLDTEQPEIPAGKR"
BASE COUNT          395 a          803 c          715 g          374 t
ORIGIN      
        1 gggccatgat cccgcagccc ccctgcgccg cgacccgccc cccggcgcca cgccaccacc
       61 agccgcggca ccaccaccgg ccacggcgcc acaaccggcc gtggcggatg atccgctggt
      121 gcagaaattc ctcatcggcc aagccactcc ggcggaccaa gccgccttgc agcagaaatt
      181 caaggccaac cagatttcgg ccaaggacct caaattgctg tctgacttcg cgcaggccaa
      241 attcgcggaa gaattccgca aggccatcac cgcgcagatc accagcctga ccggcggcac
      301 gccgccggca ggcaagagcg atggcggcct cagcggcaat gtgcagatcg gccccggcgg
      361 cgtcagcggc aatctcaata tcggcggcgg caccatcacg ctcggcggcc ccagcccgga
      421 tacgtcaggc gcctaccata cctatctgaa gaccagcctg cgggtgagca tggcgggggc
      481 cgccaaggac gtggcggaag ggctggcagg ttcggtggat acaatgatcg aggtcaatgc
      541 cgcggccggc gccgacagcg gcacgatcac gctcaacccg ccgggcggcg acacggcact
      601 ggccaagaac atcgtcgccg ccgccttccc caccggggcg atcaaactac cgatcgaagc
      661 ctcgttgctg aaatggatca ggcgcggcaa catcctcggc acggtcagcc tcaccgtcag
      721 cgggccgggc ggcagccctg gccctggcct ttcgctgcaa acggagcttc tgccgaaagg
      781 tgtcacgctg acgctcagca tttcgcaaag cagcgacagg ccgacgctcg cccccagcac
      841 aggcgatccc gccctgccgg gcccgcgcgt gttcggcacg gtggggggcg gcagttccgg
      901 tggcaagcct gccggtgtcg caacggtcgg gttcgacctg ccgctcgtga ccgatacggc
      961 ccacccctat atctatggcg ggctcggctt gcgcggcacg gccgatacca ccggcagcct
     1021 ggccggcctc ggggctggca tcgttggcct gcacatcagc cccatcacgt tgcaactggc
     1081 aatagaagcc ggcatcggcc gtgccgcgcc tggcacgggc gctgccggca gcaccgccgg
     1141 caccggccag gccaccttcg cgtccggcgc cgagggcagc gtcagctaca agatattgca
     1201 gcatgtcgaa atcatggccc ttgcctcggt gctcggcggc acgcacatgc ccgccgccgg
     1261 cacccttcaa gcgggcatcg gcggcgtttt ctagtcagcg gtgctgagat tttctggtct
     1321 cttagacagc aaaacctccc ggtcacgttt cgtttccggg tgtcagctat cggtggttgc
     1381 gggggccggc caccaacttg atttgctgct ttcagggtaa cccatgcctc agattacaaa
     1441 gctgagggtc aggcgtgggg cgccgggcgg aacggatcaa tttcaatcgg gtcgagttcc
     1501 gggccccgtc cggcggaagt cgacaccata gtctttccgc tgctgcccat tgccgcgcca
     1561 gcttgagttt gcacctgttg aacgccgctg cgaggaggct ctcggcagga cccgaggccg
     1621 tccgcaggtc gcgcggcgcg acaaatcgcg cctcatcgct tccccgccgg tatctcgggc
     1681 tgttctgtgt ctaagggggc gtgatcggcg acttcgctgg cgcgcttacg gtagcttagc
     1741 tcggccaagg atagggcgcg gccctttcga ttgcggatct cgagctttgc gatgggttcg
     1801 ccggtcgcaa gctcgatcac ctcgactggc ggaccagccg gcgggctcgc ccaatggtct
     1861 ccccattgca ttagcgcgat cagcgtcgtg gccagatccg cgcccttctc cgtgagccgg
     1921 tattccgggt atttcgaccc ctccggatca ggcatccgcg tcagaatccc aaaggccacg
     1981 agccgccgca ggcgcgcgcc atcgtctcgg gcctcctgat gattgccacg gcgctcaagc
     2041 tgaatgtcgt cacagaaggc atcaagaacg aacggcagat gacctccctg cagccaactc
     2101 ggctggaggc tagggcacgg ctatttcctg gggcacccct tgcctcccgc ggagcttaac
     2161 gaaatgctca gggccaaggc cccagtgcgc tcaatccccg agtgcgctca atccccgagt
     2221 gcgctcaatc cccgagtgcg ctcaatcccc gccgagccct gaagccgggg ttgcggccgc
     2281 tagactg
//
LOCUS       DASQCV010000516         4521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_941291, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000516 DASQCV010000000
VERSION     DASQCV010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4521
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_941291"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            317..1024
                     /locus_tag="VEQ16_07840"
     CDS             317..1024
                     /locus_tag="VEQ16_07840"
                     /inference="COORDINATES: protein motif:HMM:NF019843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP63783.1"
                     /translation="MAQSDLAELIRGGRTNPRFTEAAPVHDWFEKAAEAGDAAAAYNF
                     GVCLAEGVNLEKDEARAAYWFRKAAETLADAAYAYATSLEHGRGVEKDEVAAREWMTR
                     AADAKLPLALLNLGRMHNMGIGGPCDDEAAKQCFEQAADAGHAHAMFVLGALHGGGHG
                     IATDRELSLSWYRKAAAAGHAGAALMLGKYLRLGIATPVDLDGARQWLGLAAKAGVPG
                     AAEELAAMDAPPPEEAA"
     gene            1056..3788
                     /locus_tag="VEQ16_07845"
     CDS             1056..3788
                     /locus_tag="VEQ16_07845"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP63784.1"
                     /translation="MKLRKIDKRNNDAAAFAWTKAREDGAEALPWLMRAARLAPEDPR
                     IALELAQTQLRQGNAANAASAFAALSKRYDIAAAWIGLALANLQSGQTQQAAEALDSM
                     LTRHCLPDDPGFASFALHVAHAAGYGGFTGVTVDGDVTRQGQGTLLGSKPDWAALARI
                     EGLAAWEKEGLAGWAARPAAPETPPELWLEDAAGMRKPVRLGKPMPPDDSAPFLPRYR
                     FRLSPAQLRALTPPFSLRGTAGAEIFGSPVDPAALVQNPKPAKKRGRPPARIPRRARL
                     ALLMPVYRGLAQTRAALNSALAAAPKGAKLIVVDDCTPEPALARWLDRLAAEDRIILR
                     RHQSNLGFCAAVNSGLTLAKGRDVLLLNADILLPPGAIETLAQVAYTHAATGTVTPLS
                     NAATICSYPNATGSNEMPGARETARLNALAHEVNGIAAVEIPTAVGFCMFIRHDCLQA
                     TGGFRGEIFAQGYGEENDFCLRARHLGFRHMAAPGAYVAHEGGVSFRAAARGLMRRNI
                     LILNNLYPGYQALVDAHAAADPLAPYRARLDEARLLKDRTRKGAVLLISHSHGGGVAR
                     QVQTDLAQWRTQGFRPLLLTTEFPEDPEKTPYPWPSLLSGGDAETCPNLAFTLPSALP
                     RLLALLRRLDVRRVVLHHSLGHHESVRGLAARLGVPQDIVVHDYASFCPRVNLLNRPD
                     KKAPLRYCGEPGLAGCVACTKVRDSGVHERLPVAQLRARSAAEFAAAARVIVPSADAA
                     RRLRRHFPGLEPEIQPWEDDRTLPPLAPTRHGDRLRVVVIGGIGPAKGFDVLLDCAAD
                     AKARNLPLDFFVIGTSADDERLLAAGIFVTGPYQEGEVQTLIKSFRPNLAFLPSIWPE
                     TWCFTLGEAWRAGLRVVIFDLGAQADRMRGTGRGAAAPLGLPPQRINDLLSKLA"
     gene            4015..>4521
                     /locus_tag="VEQ16_07850"
     CDS             4015..>4521
                     /locus_tag="VEQ16_07850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63785.1"
                     /translation="MGLAQPPAQGGISGAQVDELKVTGHLMTLPPGLFCIINENNPGA
                     ARNHGMPGVRISPPPAGGENIEISGFRTDGWLSAEGDATLVRVRKKPAQILVTIYQLP
                     NEASSAPRLQVRQLLGGEDMPGDQLPNAPAPAPAATQAPANAKIALLAHIQTRGDVGA
                     AFGDWLGER"
BASE COUNT          803 a         1482 c         1450 g          786 t
ORIGIN      
        1 caaatacggt ttcatgctgc tcaatggcat cggcgtgaag cagaacaagc tggaaggcga
       61 aacttggctg cgccgtgccg ctctggcggg cgatcccgag gcggcgctca tagttgccaa
      121 catctatgtg cgtggcgagg gcgacttgcc gccgagcttc gccgaggcgg cgcaatagtt
      181 ccgcctggcg gccgaaggcg gcagcaagaa cgcggctagg gccctggcca ttctgcacct
      241 caccggcgcc ggcacgccgc gcgacgcgga tgaagctgcg aaatggttcc gcaaagcggc
      301 cgaggcgggg gatgtcgtgg cccagtcaga cctggccgag ctgatccgag gcgggcgcac
      361 caacccgcgc tttacggaag cagcgccagt gcatgactgg ttcgagaagg cagccgaggc
      421 aggggatgcc gcagccgcct ataatttcgg cgtgtgcctg gccgaagggg tgaatctgga
      481 aaaggacgag gcgcgtgccg cctactggtt ccgcaaggcg gctgagactt tggccgacgc
      541 agcctatgcc tacgccacgt ccctggagca tgggcgcggc gtagagaagg atgaggttgc
      601 agcacgggaa tggatgaccc gcgccgccga cgcgaaactg cccttagcgc tgctcaatct
      661 tggccggatg cataatatgg gcattggcgg cccgtgtgat gacgaagcgg ccaagcaatg
      721 tttcgaacag gccgcggacg ctggccatgc ccatgccatg ttcgtgctcg gcgcgctaca
      781 tggtggcggg cacggtatcg ccacagaccg cgagctctct ctctcctggt accgcaaggc
      841 ggccgccgca ggccatgccg gggcagcgct gatgctgggc aaatatctgc gcctgggcat
      901 tgccacgccg gtcgacctgg atggggcgcg gcaatggctt ggcctcgcgg ccaaggccgg
      961 cgtgccaggt gctgccgagg aactggccgc catggatgct ccgcccccgg aagaagctgc
     1021 ctgagccgca tggcccggtt gccacgcaga ctgtcatgaa gcttcgcaaa atcgacaagc
     1081 ggaacaatga cgccgccgcc ttcgcctgga cgaaagcacg ggaagacggt gctgaagcgc
     1141 taccctggtt gatgcgggca gctaggctgg cgcccgagga cccacgcatc gccttggagc
     1201 tggcccagac ccagctgcgc cagggtaatg ccgccaacgc tgccagcgcg ttcgcggctt
     1261 tgtccaaacg ctacgatatc gccgcagcct ggatcgggct ggcattggca aatctccaat
     1321 ccggccagac gcaacaagcc gccgaggcgc tggactcaat gctcacgcgc cattgcctgc
     1381 cggatgatcc gggcttcgcc agctttgccc tgcatgtggc tcacgccgcc ggttatggcg
     1441 gttttacggg cgtgacggtg gatggcgacg tcacccggca aggccagggt acgcttctgg
     1501 gatcaaaacc tgattgggcc gcgctggccc gcatcgaagg gctggcagcc tgggagaagg
     1561 agggactcgc cggctgggca gcacgcccgg cagcgccgga aacgccgccg gaattgtggc
     1621 tggaagacgc cgcaggcatg cgcaagccag tacggctggg caagcctatg ccaccggatg
     1681 attccgcgcc tttcctgccg cgctaccgct tccgcctgag cccggcgcag ctgcgcgccc
     1741 tcaccccgcc tttcagctta cgcggcacgg caggagcgga gattttcggc agcccagtgg
     1801 accctgccgc tttggtgcag aaccccaagc ccgccaaaaa gcgcggccgc ccaccggcgc
     1861 gcatccccag acgcgccaga ttggcgttgc tgatgccagt ctatcgcggc ctggcacaaa
     1921 ccagggccgc actgaattcg gcgctcgccg ccgcccccaa aggggcaaaa ctcatcgtgg
     1981 tcgatgattg cacgcccgag cccgctttgg cgcgctggct agaccggctg gccgcggaag
     2041 accgcatcat tctgcgccgg catcaaagca atcttggctt ctgcgcggcg gtgaatagcg
     2101 gcctcacctt ggccaagggc cgcgatgtgc tgctgctcaa tgccgatatc ctgcttcccc
     2161 ccggcgccat agagacattg gctcaggttg cctacaccca tgccgccacc gggacggtga
     2221 cgccgctctc caacgcggcg acgatctgct cctatcccaa cgccactggc agcaacgaga
     2281 tgcccggcgc gcgcgagacc gcgcggctga atgcgctggc ccatgaggtg aacggcatcg
     2341 cagctgtaga aattccgaca gccgtcgggt tctgcatgtt catccgccat gattgcctcc
     2401 aagccacggg cggcttcaga ggcgagattt ttgcacaggg ctatggcgag gagaatgatt
     2461 tttgtttgcg cgcgcggcat ctcggttttc gccacatggc ggcgccgggg gcctatgtgg
     2521 cgcatgaagg cggcgtctcg ttccgcgccg cggcgcgcgg gctgatgcgc cgcaatatcc
     2581 tgattctaaa taatctttac cctggctacc aagccttggt ggacgcccac gcggcagccg
     2641 acccgctggc cccttatcgc gcccggctgg atgaagctcg gctgctcaag gaccggacgc
     2701 gcaaaggcgc ggtgctgctg atctcgcaca gccatggcgg cggcgtggca cggcaggtac
     2761 agacggattt ggcgcaatgg cgcacacagg ggttccgccc cttgctgctg accacagaat
     2821 ttcccgaaga ccccgagaaa accccttacc cctggccctc cctgctgagc ggcggcgacg
     2881 cggaaacctg ccccaacctc gctttcaccc tgcccagcgc gctgccgcgc ctgctcgcct
     2941 tgctccggcg gctcgatgtg cggcgcgtcg tgctgcatca cagccttggt catcatgaga
     3001 gcgtgcgcgg cctggccgcc cggctcggcg tgccgcagga cattgtggtg catgattatg
     3061 cgagcttctg cccgcgtgtg aatctgctca accggccgga caaaaaagcc ccgctgcgct
     3121 attgcggcga acccggcctg gccggctgcg tggcctgcac caaggttcgt gatagcggcg
     3181 tgcatgagcg cctgccagtg gcccaactgc gcgcacgctc agctgcagaa tttgctgcgg
     3241 cggcacgtgt gatcgtacct tccgccgacg ccgcgcggcg gctgcgccgg cattttcccg
     3301 gcctggagcc tgagattcag ccctgggagg atgaccgcac cctgcccccg cttgccccta
     3361 cccggcacgg cgacaggcta cgcgtggtcg tgattggcgg tatcggcccg gcaaaaggct
     3421 tcgacgtcct gctggattgt gccgccgatg cgaaagcccg caatctgccg cttgattttt
     3481 ttgtgatcgg cacgagcgcc gacgatgagc gcctcctggc ggctggtatt ttcgtcaccg
     3541 gcccatacca agagggcgaa gtacagacct tgattaaaag cttcaggcct aacctcgcct
     3601 ttttgccctc catctggccg gaaacctggt gcttcacttt gggtgaggcc tggcgggcag
     3661 gtttgcgggt ggtgatattc gatctgggcg cgcaggccga ccgcatgcga ggcacgggac
     3721 gcggtgcagc cgcgcctctt ggtctgccac cgcaacggat aaatgatttg ttatccaagc
     3781 tggcctagag cgcatttttt tgatctgaac aagatcattt taccggtatt ggggctggat
     3841 aattacccgg ctttaaatta accgttgtta tttatgtaac caagctgaag aatcgccctt
     3901 cgggctgggt tacgccgtaa taacagctaa ttaggaaatg acatgcctgc tcctgctccc
     3961 gcccctgtcc agaccgcacc caggaccggc gcaggacgag acgccggacg tggcatggga
     4021 ctggcacagc ccccagccca aggcggcatc tccggcgccc aggtggatga actaaaagta
     4081 acgggccatc tgatgaccct tccgccgggg cttttctgta tcatcaacga gaataatccg
     4141 ggcgccgcgc gcaatcacgg catgcccggt gtgcgcatct ccccgccacc agccggcggc
     4201 gagaatatcg agatttccgg tttccgtacc gatggctggt tgagcgctga gggcgacgcc
     4261 acgctggtgc gcgtgcgcaa gaagcctgca caaattcttg tcaccatcta ccagctgcca
     4321 aacgaggctt cgtccgcgcc gcgcctgcag gtgcgccagc tgctcggcgg cgaggacatg
     4381 cccggcgacc agctgccaaa cgccccagcc ccagcccctg ccgccaccca ggcacctgcc
     4441 aatgcgaaga ttgcactgct ggcacatatc cagacgcgcg gcgacgtggg cgcggccttc
     4501 ggcgactggc tgggcgagcg c
//
LOCUS       DASQCV010000517         3754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_443195, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000517 DASQCV010000000
VERSION     DASQCV010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3754
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443195"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..374)
                     /locus_tag="VEQ16_07855"
     CDS             complement(<1..374)
                     /locus_tag="VEQ16_07855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine-phosphate decarboxylase"
                     /protein_id="HYP63786.1"
                     /translation="MRDHGGNLDWAVRHYGGAREGWIDLSTGINRQPYPVPRIAPEAW
                     TALPAADATAALIAAARLAYGTNAPILPLAGAQAAIQLIPHLAPPGRAKILTPTYNEH
                     EAALRAAGWHVEQVAASEALAGA"
     gene            complement(384..1325)
                     /gene="cbiB"
                     /locus_tag="VEQ16_07860"
     CDS             complement(384..1325)
                     /gene="cbiB"
                     /locus_tag="VEQ16_07860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016880 - acid-ammonia (or amide) ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-phosphate synthase CbiB"
                     /protein_id="HYP63787.1"
                     /translation="MSLHAALAAMLVALAIDAAIGWPDALFRRIGHPITWCGALIGLL
                     DRAWNKGPAPLRRLGGTAAALLVIFISAVIAGLLQLLMPFGVPGILLTGVLAWPLVAA
                     RSLDNHVAAVAAPLAQNDLPRARREVAKIVGRDPERLDAPGIARAALESLAENSSDGI
                     IAPLFWGALFGLPGIAAYKAVNTLDSMLGHRSPRYLAFGWASARIDDLANLIPARLTA
                     LLFVLAARERKPAFVAMWRDARHHRSPNGGWPEAALAGALGIRLSGPRAYGDGIAQEP
                     WINAPGRDPGAAEIYAGLALYRLMLVLAGFALALAAL"
     gene            complement(1322..1900)
                     /locus_tag="VEQ16_07865"
     CDS             complement(1322..1900)
                     /locus_tag="VEQ16_07865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013634910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HYP63788.1"
                     /translation="MARLLFIRHARSSHAGLAGRRDVPAELPPAPDLARVRQHLSVLW
                     GGPPPRAFTSPAQRCRQTAEALLPNLDMPADARLWEQDFGAWEGLESSSLPDLGPLSR
                     AETATICPPGGESFLDLTVRATPALQEIAASGSAVIFAHAGIIRTGLGLALGDMTQAL
                     TFDIAPFSATLLQILPDGHWSVGFVNLPLLPP"
     gene            1967..2467
                     /gene="cobU"
                     /locus_tag="VEQ16_07870"
     CDS             1967..2467
                     /gene="cobU"
                     /locus_tag="VEQ16_07870"
                     /EC_number="2.7.1.156"
                     /EC_number="2.7.7.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0043752 - adenosylcobinamide kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
                     /protein_id="HYP63789.1"
                     /translation="MIILITGGARSGKSLYAEQRCLALPGMPRYIATAEAGDEEMAAR
                     IAAHRARRGPPWQTHEVPLDLAAAMEATDGDGPRLVDCLTLWLSNLMFAGRDVAAETA
                     LLCAAVQRQSAPVLFVTNEVGMGIVPENALARAFRDEAGRLNQDIARLADEVQLLVSG
                     YPVRVK"
     gene            2490..3515
                     /gene="cobT"
                     /locus_tag="VEQ16_07875"
     CDS             2490..3515
                     /gene="cobT"
                     /locus_tag="VEQ16_07875"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008615947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008939 -
                     nicotinate-nucleotide-dimethylbenzimidazole
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HYP63790.1"
                     /translation="MTVSLFPAASFAELRTHLVALPAFDDDAARAARARQDNLTKPPG
                     SLGRLEDVAVFMAGWRGTARPRIGKAQALVFAGNHGVCAQGVNPYPQDVTAQMVANFQ
                     HGGAAINQLCRASGAELSVVALELERPTRDFTQEPAMSEAEVLEAMAQGAAALDRQAD
                     ILLLGEMGIGNSTVAAALATALFGGVATDWAGPGTGADIAGMNRKVAAIAAGVARHAE
                     KKRDPLAVLAAFGGREQAAICGAILAARMARIPVLLDGFICTAAAAVLAPLGMDALAH
                     CLAGHVSAEPGHRRLLAALGKTPLLALEMRLGEGSGAAVALSVVRAALEAHDGMATFA
                     EAGVSGA"
     gene            3512..>3754
                     /locus_tag="VEQ16_07880"
     CDS             3512..>3754
                     /locus_tag="VEQ16_07880"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0051073 - adenosylcobinamide-GDP
                     ribazoletransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HYP63791.1"
                     /translation="MSALRRRVDEARLAFMLLSRIPMGRMTEAPPLADAVWAYPLVGA
                     VAGGLAGLVFWLAAGAGLPPAVTALLAVGAGVLLTGA"
BASE COUNT          594 a         1175 c         1424 g          561 t
ORIGIN      
        1 gcgccagcca gggcctcgga tgcggcgacc tgttccacgt gccagcccgc cgcgcggagg
       61 gcggcttcgt gctcgttata ggtgggagtg agaattttag cgcggcccgg cggggcgaga
      121 tgcggaatga gctggatggc agcctgcgcc ccggccagag gcaggatggg ggcgttcgtg
      181 ccataggcca ggcgggcggc ggcgatcagc gcggcggtgg catccgccgc ggggagcgcc
      241 gtccaggcct cgggggcgat gcgcggcaca ggataaggct gacggttgat gccggtggag
      301 agatcgatcc acccctcccg cgcgccgcca taatgccgca ccgcccaatc cagattgccg
      361 ccatggtcgc gcatgatgcc gccttacaac gccgccagag ccagggcgaa tccggccagc
      421 accagcatga ggcggtatag cgccagcccg gcatagattt cggccgcgcc agggtcgcgg
      481 cccggcgcgt tgatccaggg ttcctgggcg atgccgtcgc cataagcgcg cgggccggag
      541 aggcggatgc cgagcgcgcc cgcaagcgcg gcctctggcc agccgccatt gggcgagcgg
      601 tgatggcgtg catcgcgcca catggccacg aaagctggct ttcgttcccg cgccgccagg
      661 acgaagagca aagcggttaa ccgggcgggg ataagattgg ccagatcgtc aatgcgcgcc
      721 gaggcccagc cgaaggccag gtagcgcggg ctgcgatggc cgagcatgga atccagcgtg
      781 ttgacggcct tgtaggcggc gatgccgggc aggccgaaca aggcgcccca gaacagcggc
      841 gctatgatgc catccgagct gttctccgcc aggctctcca aagcggcgcg ggcgatgcca
      901 ggcgcgtcga gccgctccgg gtcacgcccg acgattttcg cgacttcccg ccgcgcgcgg
      961 ggcagatcgt tttgcgccaa gggggccgcg accgcggcga catggttgtc cagcgagcgc
     1021 gccgccacca ggggccaggc gagcacgcct gtcagcagga tgccgggtac cccgaacggc
     1081 atcagcagtt gcaacagccc ggcgatgacc gcactgatga aaatgaccag cagcgccgcg
     1141 gccgtgccgc cgagccggcg caaaggcgcg gggcctttgt tccaggccct gtccagcagc
     1201 ccgatgagcg cgccgcacca agtgatggga tggccgatgc ggcggaacaa ggcgtccggc
     1261 cagccgatgg cggcatcgat ggccaatgcc accagcatgg cggctagggc ggcgtgcaga
     1321 ctcatggcgg gagcaagggc aggttcacga aaccgacgga ccagtgaccg tccggcaaga
     1381 tttgcagcag cgtcgcggaa aagggcgcga tatcaaaggt caaggcctgg gtcatgtccc
     1441 ccagcgccag cccgaggcct gtacggatga tgccggcatg ggcgaagatg accgccgagc
     1501 cactggcggc gatttcctgc agggccgggg tggcgcggac cgtgagatcg agaaaagact
     1561 ctccccctgg cgggcagatg gtggccgttt cggcgcggct gagcggaccg agatcgggca
     1621 aggaggaaga ttccagcccc tcccaggcac cgaaatcctg ctcccacagc ctggcatcgg
     1681 caggcatgtc cagattcggg agaagggcct cagcggtttg ccggcagcgc tgcgcggggc
     1741 tggtgaaggc gcgcggcggc gggccgcccc acaagacgga cagatgctgg cgcacccgcg
     1801 ccagatccgg cgccggggga agctcggcgg gcacgtcgcg ccgcccggcg agcccagcat
     1861 gggatgaacg ggcgtggcgg atgaacagaa ggcgggccat acccggcggt gccacagagg
     1921 agcgcccttt tcaagctgga caaatgatgt ttgacatggc cccttcatga tcatcctcat
     1981 cactggtggc gcccgttcgg gcaagagcct ctatgccgag cagcgttgcc tggcgctgcc
     2041 tggcatgccg cgttacatcg ccaccgccga agccggggat gaagagatgg ccgcgcgtat
     2101 cgccgcgcac cgcgcccggc gcgggccgcc ttggcagacc cacgaggtgc cactggatct
     2161 ggccgcggcg atggaggcga cggatggcga tggcccgcgg ctggtcgatt gcctcacttt
     2221 gtggctctcc aacctgatgt tcgccgggcg ggatgtggcg gcggagaccg cgcttctatg
     2281 cgcggccgta cagcggcaga gcgcgccggt gctgttcgtg accaacgagg ttggcatggg
     2341 catcgtgcct gagaatgcgc tggcccgcgc cttccgcgac gaggccgggc ggctgaacca
     2401 ggacatcgcc cgcctcgcgg acgaggtgca gctgcttgtg tccggctacc ccgtgcgggt
     2461 gaaatgaatt ttgttccgag tggatgaaga tgacggtctc tctgtttcct gctgcctctt
     2521 ttgctgaatt gcgcacgcat ctggtcgccc tgcccgcttt cgatgacgat gcggcgcggg
     2581 ccgcgcgcgc gcgccaggat aatctgacca agccgcccgg ctcgctggga cggctggagg
     2641 atgtggcggt attcatggcc ggctggcggg gcacggcacg gccgcgcatc ggcaaggcgc
     2701 aggcgctggt ctttgcgggg aatcatggcg tgtgcgcgca gggtgtgaat ccctatccgc
     2761 aggatgtcac cgcgcagatg gtggcgaatt tccagcatgg gggggcggcg atcaaccagc
     2821 tctgccgggc gagcggcgcg gaattgtccg tggtggcgct ggagctggag cggccaacac
     2881 gcgatttcac gcaagaaccg gcgatgagcg aggcggaggt gctggaggcg atggcgcaag
     2941 gggccgccgc gctcgatcgg caagcggata ttctgctcct gggcgaaatg ggcatcggca
     3001 attccaccgt cgcggcggca ctggcaaccg ccttgttcgg cggcgtagca acggattggg
     3061 ccgggccggg cacaggggcg gatatagccg gaatgaaccg caaagtggcg gccattgcag
     3121 ccggggtggc gcgccatgcg gagaaaaaac gcgacccgct cgcggtgctg gcggcctttg
     3181 gcgggcgcga gcaggcggcc atctgcggcg ccattctggc ggcgcgcatg gcgcggattc
     3241 cggtgctgtt ggacggattc atctgcaccg ccgcggccgc cgtgctggcg ccattgggga
     3301 tggatgcgct ggcgcattgc ctggccgggc atgtgagcgc cgagcctggg catcgccgcc
     3361 tgctggcagc gcttggcaag acgccgctgc tggcgctgga gatgcggctt ggcgagggca
     3421 gcggcgccgc cgtggcgctg agtgtggtac gcgcggcgct tgaggcccat gacggcatgg
     3481 ccactttcgc tgaagccggc gtgtccggcg catgagcgcg ctccgccgcc gggtggatga
     3541 ggcgcggctg gcattcatgc tgctgagccg gattcccatg gggcggatga cggaggcgcc
     3601 gcctctggcg gatgccgtat gggcttatcc gctggtaggc gcggtggcgg gaggcctcgc
     3661 ggggctggtc ttctggctcg cggccggggc cgggctgccg cctgccgtga cggcattgct
     3721 ggcggttggc gctggcgttc tgctgaccgg ggcg
//
LOCUS       DASQCV010000518         1737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2433242, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000518 DASQCV010000000
VERSION     DASQCV010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2433242"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1463
                     /locus_tag="VEQ16_07885"
     CDS             <1..1463
                     /locus_tag="VEQ16_07885"
                     /inference="COORDINATES: protein motif:HMM:NF024846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD/NAD(P)-binding protein"
                     /protein_id="HYP63792.1"
                     /translation="AGLRDSLPRTWPPEAGKDEVPCAVGVIGAGFSGTIATILLRRHL
                     PAAQPVYLIERSGEFARGVAYAESEVPHLLNVRSANMSAFADDPGHFERWLAGEGAQW
                     PEELRRTEAGLFATRRLYGKYLQATLRCELAASGGAVRLLPAEVQALEPRPQGWRLRL
                     AGGGTLMARGVVLATGSLPAGRPCDGAEIRDPWAPEALSGLEPDVPVLIIGTGLTMVD
                     LVLALQAQGFRGPIIALSRRGLVPQAHEQVAQPWLAPDFGEAAHGSVLALLRAVRAEL
                     RAASVQNIGWRAVIDSLRPLTAPLWHGLKPQEQARFLRHLRPYWDVHRHRMAPPAAML
                     IDTLRASGRLRILRGRVREVRCGEGQATVLYDECPGGVRKTLQVQRVIHATGLPSVRE
                     SGGLVASMLASGQTRPDGQGLGLEVTAGLALIDANGQPVRHLWALGPIVRGMFWECTA
                     VPDIRQQASVLAQEVAAALSDASAGPNKTIESSAKS"
     gene            complement(1477..>1737)
                     /locus_tag="VEQ16_07890"
     CDS             complement(1477..>1737)
                     /locus_tag="VEQ16_07890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63793.1"
                     /translation="VFGAVRGAIIICIAYIGLGFAEPASQWPDPVVNARFLPMAYSGA
                     KALVGLLPKPYQPKIDSPPGAPVPAAATLMQQPVSGSALKSN"
BASE COUNT          246 a          551 c          635 g          305 t
ORIGIN      
        1 ccgccggatt gcgggacagc ctgcccagaa cctggccgcc cgaggcgggc aaggatgagg
       61 tgccttgtgc tgtgggcgtc atcggcgccg ggttttccgg cactattgcc accattctgc
      121 tccgccgcca tctgccggcg gcgcagcccg tctatctcat cgagcgcagc ggcgaatttg
      181 cccgtggtgt cgcctatgct gagagcgagg tgccgcatct gctgaatgtg cgcagcgcta
      241 atatgagcgc ttttgccgat gatcctggcc atttcgagcg ctggctggcg ggggaggggg
      301 cgcaatggcc ggaggagctg cggcggaccg aggccgggct gttcgcgacg cggcggctct
      361 acggcaaata tctgcaggcc acgttgcggt gtgagcttgc cgcgtccggc ggcgcggtgc
      421 ggctgcttcc ggccgaggtg caggcgctgg agccgcgtcc gcagggctgg cggctgcgtc
      481 tggccggggg tggaaccctc atggcgcggg gggtggtgct ggccaccgga agcctgcccg
      541 ctggccggcc ctgcgatggc gcagaaatcc gcgatccctg ggcgccggaa gcgttgagcg
      601 gcctcgagcc tgacgtgccc gtgctcatca tcggcacggg gttgaccatg gtggatctcg
      661 tcctggcgct gcaggcccag gggttccgtg gccccatcat cgcgctgtcg cgccgcgggc
      721 tggtgccgca ggcgcatgag caagtggcgc agccctggct ggctccagat tttggcgaag
      781 ccgcccatgg ctcggttctg gccctgttgc gggcggtgcg ggccgagctg cgcgcggctt
      841 cggtgcagaa tattggctgg cgcgcggtca tcgattcact ccgcccgctg accgcgccct
      901 tgtggcatgg cctgaagccg caggagcagg cgcgctttct gcgccatctc cgcccttatt
      961 gggatgtgca ccgccaccgc atggcaccgc ccgcggccat gctgatcgac acgctgcgcg
     1021 ccagcgggcg gctgcgcatc ctgcgcggcc gggtgcgcga ggtgcgatgt ggcgaaggcc
     1081 aggccacggt gctgtatgat gaatgtccag gtggtgtgcg caaaacgctg caggtgcagc
     1141 gtgtcatcca tgccaccggc ctgccttccg tgcgcgaaag cggcgggctt gtggcctcca
     1201 tgctggccag cggccagacg cggccggatg ggcaggggct ggggctggag gtgacggcgg
     1261 ggctggcgct catcgatgcg aatggccagc cggtgcgcca tctctgggcg ctggggccta
     1321 ttgtgcgggg catgttctgg gagtgcaccg ccgtgccgga tatccgccag caggcgagcg
     1381 tgctggcgca ggaggttgca gccgcgctgt ctgacgcttc tgccggccca aacaaaacga
     1441 tagagtcttc agctaaaagc tgaagactct atcagcctag ttgctcttca atgcgctccc
     1501 agaaacgggc tgctgcatca gcgtcgctgc cgcaggcacc ggggcgcctg gcggcgaatc
     1561 gattttcggc tgatatggct tgggcaaaag ccccaccagg gctttcgcgc cgctataggc
     1621 catgggcagg aagcgcgcat tcaccaccgg gtccggccat tgcgaagccg gttcggcgaa
     1681 gcccagcccg atataggcga tgcagataat gatggccccg cgcactgccc cgaacac
//
LOCUS       DASQCV010000519         5504 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_275327, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000519 DASQCV010000000
VERSION     DASQCV010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5504
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275327"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..246
                     /locus_tag="VEQ16_07895"
     CDS             <1..246
                     /locus_tag="VEQ16_07895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63794.1"
                     /translation="GLVIPDFTTGDVLTLTGAAELGLDDASLAEADSVGAERLWRLRP
                     HQGRWLRRALPLALELKSWSPFTLATGDWQNHSGDTE"
     gene            243..713
                     /locus_tag="VEQ16_07900"
     CDS             243..713
                     /locus_tag="VEQ16_07900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010668544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP63795.1"
                     /translation="MTETRPPLPPYTLDTAIQKVRAAEDGWNSRDPARVALAYTPDSQ
                     WRNRAEFFSGRDAIIAFLERKWARELDYRLIKELWAFHENRIAVRFAYEWHDDSGHWY
                     RSHGNEQWEFDASGLMRRREASINDVPIKEADRKFHWPLGRRPDDHPGLTELGL"
     gene            complement(773..2947)
                     /gene="katG"
                     /locus_tag="VEQ16_07905"
     CDS             complement(773..2947)
                     /gene="katG"
                     /locus_tag="VEQ16_07905"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004096 - catalase activity [Evidence
                     IEA];
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HYP63796.1"
                     /translation="MTTEAQCPVVGHAARPIAGGGTENAHWWPKELRVDLLNQHANKS
                     NPLGQAFNYREEFKKLDYTALKNDLRKLMTDSQSWWPADFGHYGPLFIRMSWHAAGTY
                     RLSDGRGGGGRGQQRFAPLNSWPDNVNLDKARRLLWPVKQKYGQKISWADLLILAGNV
                     ALETMGFRTFGFAAGREDVWEPDTDVNWGVETTWLTRRTIEEFPNPLSATEMGLIYVN
                     PDGPGASGDPIGAAPYIRETFARMAMDDEETVALIAGGHTFGKTHGAAPESHKGPEPE
                     GADLAAQGLGWASDYGTGGGRDAIGSGIEVTWTQTPIQWSNHFFENLFKYEWVQTQSP
                     GGHIQYEAKDAPEIIPDPSDPSKKRKPTMLTTDLSLRQDPVYEKISRRFLENPQAFAD
                     AFARAWFKLIHRDLGPRSRYLGPEVPQEVLVWQDPVPAVDHPLINDADAAALKAKVLA
                     TGLTVSELVGTAWASASTFRSGDKRGGANGARVRLAPQKDWEVNQPAQLAKVLKVLEG
                     VRAEFNKTGKKVSLADLIVLAGNAGVEQAAKAAGHDVKVPFSPGRTDASQDQTDAHAF
                     EVMEQPADAFRNYQKANLPAPAENFLIDRAQLLTLTAPEMTVLFGGLRAININVDGVS
                     HGVFTGKPGTLTNDFFVNLLDMGTQWHAADETNELFEGRDRKTGAIKWTGTRVDLVFG
                     SNSILRALAEVYASTDAKDKFIKDFVAAWTKVTNLDRFDLLA"
     gene            complement(2937..3413)
                     /locus_tag="VEQ16_07910"
     CDS             complement(2937..3413)
                     /locus_tag="VEQ16_07910"
                     /inference="COORDINATES: protein motif:HMM:NF013629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HYP63797.1"
                     /translation="MRHAPSPLPHSHDWALSLRAKGLRATTQRVAVLEVLHHHPHADA
                     EDIFHIVRASLPTISRQAIHMIVQDLSTQGLIRRISLPDSASARYETRIDDNHHHIQC
                     IACGRIEDVDCVVGHAPCLSPNDTHGMRIIEASIVFRGICRDCGKKSNRGVKSHDD"
     gene            complement(3581..4915)
                     /locus_tag="VEQ16_07915"
     CDS             complement(3581..4915)
                     /locus_tag="VEQ16_07915"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HYP63798.1"
                     /translation="MSARRGLPWLGILLLIVILAGAGAAWYFLWLPGPLAFEGGPKVA
                     LADYKGTSPTGVPPSLAQADLVTRGKYLTQAADCAACHTAEGGVPYAGGRPFRLPFGT
                     LYSPNITPDKDTGIGNWSDADFLRAVHRGIAPDGTRLYPAFPYASYTMLTDDDVLAIH
                     AYLATLPPVHQPNIADDLQFPYNQRWLMIFWGAFYNSGTRFEPAANQSAEWNRGAYLV
                     EALEHCGECHTPRNLLQAMNTRQKFAGGAAEGWSAYNITMDTQSGIGAWSPEALAQYL
                     SVGFAPGHGTASGPMAQAVQLSLSQLTPDDIKAIVTYMRNIPPIPTAGLPVPAPAAST
                     DPATGPQGNPLGKQVFEEACASCHGWSGQGTIGPGALFTGNRAVNDPSGVNVAMMILH
                     GTGAPDGGGAFMPSFAAAYSDDEIAAVANYVTARFGAASQLSSQDIAKLRSQ"
     gene            complement(4912..>5504)
                     /locus_tag="VEQ16_07920"
     CDS             complement(4912..>5504)
                     /locus_tag="VEQ16_07920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004273313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HYP63799.1"
                     /translation="FMDRLANEIRTDPVEFRRLLLRDDPRGQAVLDLATQKAGWGNPL
                     PVRSGRGVSLQFAFGSYLCTVAEVAVDDDGTVHVKRLTCAVDCGMPVNPDGVVAQVQG
                     GLVFGLSAILYDSITVENGRVQQSNFNNYRVMRIDEMPQIEVILVKNAEPPGGLGEPG
                     TVSVQPAVANAIYAATGVQLTRLPVDASLLATGANP"
BASE COUNT         1020 a         1787 c         1684 g         1013 t
ORIGIN      
        1 gggcttgtca tccccgattt caccacaggt gacgtgctca ccctcaccgg cgccgccgag
       61 ctcgggctcg atgacgccag cctcgcggaa gcggacagcg tcggcgcgga gcggctctgg
      121 cgcctgcgcc cgcatcaggg acgctggctg cgccgtgcct tgcccctggc gctggagctg
      181 aaaagctggt cacccttcac cctcgccaca ggcgactggc agaaccatag cggagacaca
      241 gaatgaccga gacacgcccg cccttgccgc cttacaccct ggacacagcc atacagaaag
      301 tccgcgccgc ggaggatggc tggaacagcc gcgaccccgc gcgcgtggcg ctcgcctaca
      361 cgccggacag ccaatggcgc aaccgcgccg aatttttctc gggccgcgac gccatcatcg
      421 cgtttctgga gcgcaaatgg gcgagggagc tcgattaccg cctcatcaag gaactctggg
      481 ccttccatga aaaccgcatc gccgtgcgct tcgcctatga atggcacgat gattccggcc
      541 actggtaccg ttcgcacggc aacgagcaat gggaattcga cgcatcaggc ctgatgcgcc
      601 ggcgcgaagc ttcgatcaat gacgtgccga tcaaggaagc ggaccggaaa ttccactggc
      661 cgctcgggcg ccggccggat gaccatcccg gcctcacgga acttgggctg taaaccagtg
      721 caaaatgaaa ccccccttgc ggggggttcc cagtctcact ccggatgatg cctcaggcca
      781 gcagatcgaa acggtccagg ttcgtcacct tggtccaggc ggcgacgaaa tccttgatga
      841 atttatcctt cgcatccgtg ctggcataaa cctcggccag agcgcgcagt atcgagttgg
      901 agccgaacac caggtcaacg cgcgtgccgg tccatttgat cgcgcctgtc ttgcggtcac
      961 gcccttcaaa gagttcattc gtctcgtcgg ccgcatgcca ttgcgtgccc atatccagca
     1021 gattgacgaa gaaatcattg gtcagcgtgc ccggcttgcc ggtgaagacg ccatggctga
     1081 ccccatcgac attgatgttg atcgcgcgca ggccgccaaa cagcacggtc atctccggcg
     1141 cggtcagcgt cagaagctgc gccctgtcga tgaggaagtt ctcagccggc gccggcagat
     1201 tcgccttctg atagttgcgg aaagcatcag ccggctgctc catcacttcg aaggcatgcg
     1261 catcggtctg gtcctgcgac gcatccgtgc ggcccggcga gaagggtact ttcacatcat
     1321 gcccagccgc ctttgccgcc tgctccacgc cggcattgcc cgccagcacg atcagatcgg
     1381 ccaaagagac cttcttgccg gttttgttga actcggcgcg cacgccctcc agcaccttca
     1441 gcactttcgc cagctgcgca ggctggttga cttcccaatc cttctgcgga gcgaggcgga
     1501 cgcgcgcgcc attggcgccg ccgcgcttgt cgccgctacg gaaggtggag gccgaagccc
     1561 aggctgtgcc gaccagctcg gacacggtca gccccgtggc cagcaccttg gctttcagcg
     1621 cggccgcgtc ggcatcgttg atcagcggat gatcgacggc gggcaccggg tcctgccaga
     1681 ccagcacttc ctgcggcact tccgggccaa gatagcgcga gcgcggccca agatcgcgat
     1741 ggatcagctt gaaccaggcg cgggcgaagg catcggcaaa tgcctgcggg ttttccagga
     1801 accggcgcga gattttctca tagaccgggt cttggcgtag cgacagatcg gtcgtcagca
     1861 tggtcggctt gcgcttcttc gacgggtcgg acggatccgg aatgatttcc ggcgcatcct
     1921 tggcctcata ttggatatgg ccccccgggc tttgcgtctg cacccattca tatttgaaga
     1981 gattctcgaa gaaatgattg ctccactgaa tcggcgtttg cgtccaggtg acttcgatgc
     2041 cgctgccgat ggcatccctg ccgccgcctg tgccgtaatc gctggcccag cccagcccct
     2101 gcgccgccag atcggcgcct tcaggttccg gccccttatg cgattccggc gcggcgccgt
     2161 gcgtcttgcc gaaagtgtgg ccacccgcga tcagcgcgac ggtctcctcg tcatccatcg
     2221 ccatgcgggc gaaggtttcg cggatatagg gcgcggcgcc gattggatcg ccactggcgc
     2281 cggggccgtc cggattcaca tagatcagcc ccatctccgt ggcgctgagc gggttgggaa
     2341 attcctcgat cgtgcggcgg gtcagccatg tggtctcgac gccccagttg acgtccgtat
     2401 ccggctccca cacatcctcg cgccccgccg caaaaccaaa tgtgcggaag cccatcgtct
     2461 ccagcgccac gttaccggca agaatgagca ggtccgccca ggagattttc tggccatatt
     2521 tctgcttgac cggccacagc aggcggcgcg ctttgtcgag attcacattg tccggccagc
     2581 tattgagcgg ggcgaaacgc tgctgcccgc gcccgccgcc gccgcgccca tcgctcaaac
     2641 gataggtgcc ggccgcgtgc caggacatgc ggatgaatag cggcccgtaa tggccgaaat
     2701 cagccggcca ccagctctgc gaatccgtca tcagcttgcg taggtcattc ttcagtgcgg
     2761 tgtagtcgag tttcttgaat tcttcacggt aattgaaggc ctgcccgagc gggttggatt
     2821 tgttcgcgtg ttggttcagc aggtcaaccc gcaattcctt cggccaccaa tgagcattct
     2881 cggtgccgcc gccagcgatc ggtctggcag catggcccac aacgggacat tgagcttcag
     2941 tcgtcatggc ttttcactcc tcggttggat tttttgccgc aatcacggca aatgccgcga
     3001 aatacgatgc tggcctcaat gatgcgcatg ccatgcgtat cattggggga caggcaggga
     3061 gcgtggccga caacacaatc aacgtcttcg atgcggccgc acgcgataca ttgaatatga
     3121 tggtgattat cgtcgatgcg cgtctcatag cgcgcgctgg cggaatccgg caggcttatg
     3181 cgccggatca gtccttgtgt tgaaagatcc tggacaatca tatgaatggc ctgccgtgag
     3241 atggtcggca gtgaggcgcg cacgatgtgg aaaatatctt ccgcatccgc atggggatga
     3301 tgatgcagca cctccagcac agcgacacgc tgtgtcgtgg cacgcagccc ctttgccctc
     3361 aggctcaacg cccaatcatg ggaatgcggc aagggggaag gggcgtgacg catggcggga
     3421 acctagcagt tattttgaat tagtcaatat aacgaataac ccaattttat tacaagacat
     3481 ccagctcgga tcatcagcgc ggcaggcagg atgtcaggca aggcgctcat cattcatcct
     3541 gcatgcaagc gggatgcgcg gaagcgcata gagccgtacc ctactggcta cgcagcttgg
     3601 caatatcctg tgagctgagc tgcgacgccg cgccgaaccg ggcggtgaca taattggcca
     3661 cggcggcgat ttcgtcgtcg ctataggcgg ctgcgaatga gggcatgaaa gccccgccgc
     3721 catccggcgc gccggtgccg tgcaggatca tcatcgccac attcaccccg ctcggatcat
     3781 tcaccgcgcg gttgccggtg aacagagcgc ccgggccgat ggtgccctgc ccggaccagc
     3841 catggcagct ggcgcaggcc tcctcgaaaa cctgtttgcc gagcggattg ccctgcggcc
     3901 ccgtcgcagg gtccgtggac gcggcaggcg ccggcacggg caggccggcc gtcggtatcg
     3961 gcggaatgtt gcgcatataa gtgacgatgg ctttgatatc gtccggcgtg agctggctca
     4021 ggctgagctg caccgcctgc gccatcgggc cggaggcggt gccatggccc ggcgcgaagc
     4081 ccacggagag atattgcgcc agcgcctccg gcgaccaggc gccgatgccg ctctgcgtgt
     4141 ccatggtgat gttataggca ctccacccct cggccgcgcc tccggcgaat ttctgccttg
     4201 tattcatcgc ctgcagcaga ttgcgcggcg tatggcattc gccgcaatgc tccagcgcct
     4261 cgacgagata ggcgccgcga ttccattccg cgctctggtt ggcggccggc tcgaagcgcg
     4321 tgccgctgtt atagaacgcg ccccagaaga tcatcagcca gcgctggtta tagggaaatt
     4381 gcagatcatc cgcgatgttc ggctggtgca ccggcggcag cgtggcgaga taggcatgga
     4441 tggccagcac atcgtcatcg gtgagcatcg tgtaggaggc ataggggaag gcgggataaa
     4501 gccgcgtgcc gtccggcgcg atgcccctgt gcacggcgcg gagaaaatcc gcatcactcc
     4561 agttgccgat gccggtatcc ttgtccggcg tgatgttggg gctgtagagc gtgccgaagg
     4621 gcagccggaa gggccgcccg cccgcataag gcacgccgcc ttcggccgta tggcaagccg
     4681 cgcaatccgc cgcctgggtg agatatttgc cgcgcgtgac gagatccgcc tgggccagcg
     4741 acggcggcac gcccgtgggc gaggtgcctt tataatccgc cagagccacc tttggtccgc
     4801 cctcgaaggc gagcggcccc ggcagccaga gaaaatacca ggccgccccg gcgcccgcca
     4861 gaatgacgat gaggagcaga atgcccagcc agggcaggcc gcgccgggcg ctcatgggtt
     4921 cgcacctgtg gcgagcagtg aggcatccac cggcaggcgg gtaagctgca cgcccgtcgc
     4981 ggcataaatg gcattggcca cggccggctg cacggacaca gtgcccggct cacccaaccc
     5041 gcccggcggc tcggcattct tcacgagaat cacctcgatt tgcggcatct catcgatgcg
     5101 catcacccgg taattattga aattgctctg ctgcacgcgg ccattttcga cggtgatgct
     5161 gtcgtacaat atggcgctga gcccgaacac cagcccgccc tgcacctgtg ccaccacgcc
     5221 atccggattc accggcatgc cgcaatccac agcacaggtc aggcgtttca catgcacagt
     5281 accgtcatca tccaccgcca cttccgccac ggtgcagaga tagctgccaa aggcgaattg
     5341 caggctcacc ccgcgcccgc tgcgcaccgg caacgggttg ccccagcccg ccttctgcgt
     5401 ggccaggtcc agcacagcct gcccgcgcgg atcatccctc agcagcaagc ggcggaattc
     5461 caccgggtcg gtcctgattt cattcgccag ccggtccata aagc
//
LOCUS       DASQCV010000520         1628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1272704, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000520 DASQCV010000000
VERSION     DASQCV010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1272704"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            688..993
                     /locus_tag="VEQ16_07925"
     CDS             688..993
                     /locus_tag="VEQ16_07925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63800.1"
                     /translation="MKKTLMALAAVATLAVSTASPAQAWRGWWGPGVAAGLIGGAIVG
                     GAIASSPYYYGPGYYYGPGYGYYGPAYSDGPYGPCYWQHQRFWDGFAWRVRNVRVCG"
     gene            1221..1508
                     /locus_tag="VEQ16_07930"
     CDS             1221..1508
                     /locus_tag="VEQ16_07930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63801.1"
                     /translation="MKKTIAAGLAIATIAASLAPVAPAQAGNGSVAAGVAAGLIGGAI
                     VGGAIASSRPAYPAPVYVEPAPPPVPPGCYWQQQRYWDGYGWVIQPVRVCY"
BASE COUNT          290 a          531 c          486 g          321 t
ORIGIN      
        1 agagccttgg gtgatgcgcc gccatcgata tgtgacgccg ctccgggatg caaagggaaa
       61 agccgggttt tgaagtgatt ccaaactggc tccgtatatt cccggccagg ctagaacgcg
      121 tctgggaacg ggcacttgcg ccaaatcaag ccaaatcaaa aagaaccgct tcacgctgga
      181 tttgctggat cctcagttgg cgccgccgcc tccatccccg ccgccgcctc cgcagtcggc
      241 gccgccgccc ccgccgctgt cacagctacc gctcgcgccg ctgtccccgc aactattgct
      301 gttgtggccc gaactgtgat gttccccgcc gaatgtctcg gagccgccaa accagcttgc
      361 aaagctccaa ctgtcgctgc gcgaggaaag gccgccatca tccggagacc caatcgcccg
      421 acgcgatgat ccccaacctg cgcgcctgcg ctccattcgc ctggacaagg cgaagatgaa
      481 cgtcgacgtg acgccgaccg caaccaaaaa gcccaccatc gcgccgttca ctgatctctc
      541 ccgaggttcc catgctgcat cgcacaatat gacacggtgc agccatgatt ggtcgccaag
      601 tgtggcgcgg ccgttcattg gtcgttcaag gtgtatgtgg aacttttgtc ggaaccaagc
      661 gctctggcat ttgagaaagg gactgccatg aagaagacac tgatggcact ggctgccgtc
      721 gccacgttag ccgtttcgac cgcctcgcct gcgcaggcat ggcgcggttg gtggggcccg
      781 ggagtcgcag ccggattgat cggcggcgcc atcgtgggcg gcgcgattgc atcgagcccg
      841 tattactatg gccccggata ttattacggc ccgggctacg gctactacgg cccggcctac
      901 agcgacggcc cgtatggccc ctgctactgg cagcatcagc gcttctggga cggcttcgcc
      961 tggcgcgtgc gcaacgtgcg cgtctgcggc taacattcag cttgatggaa tcagtgggtg
     1021 acgtcccgtt tttcgggacg tcattcattt tgaggccaga gaaacatccc ttttcaggtc
     1081 acacggtgtc gcctgtttac cggggattga ctgtttgtgc gtttttctaa cgcaacggcc
     1141 aattccaaaa tcgagcgtaa gcacctcccc caaaaccctg gcgctgccgc aaggcgcgcc
     1201 acctccagga gaccaacgaa atgaagaaga ccattgctgc gggtctcgcc attgcgacga
     1261 tcgccgcgtc gctggcaccc gtcgctccgg cgcaagccgg aaacggcagc gttgctgcgg
     1321 gcgtggcggc gggcctgatc ggcggcgcga ttgtcggcgg cgccatcgcc tccagccgtc
     1381 cggcctatcc cgccccggtg tatgtcgagc ccgcgccgcc gccggttcct ccgggctgct
     1441 attggcagca gcagcgttat tgggacggct acggctgggt aattcagcca gtccgcgttt
     1501 gttactgaac ttgtgtcagt gagttgatca taggcccggc cgacatctcg gccgggcttt
     1561 tttcttgcgc gcgcttgctg gacgcgcgac cgcggcttac cgcgcagctt cgatcgaacg
     1621 cagcaccg
//
LOCUS       DASQCV010000521         2010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_443510, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000521 DASQCV010000000
VERSION     DASQCV010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443510"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..624
                     /locus_tag="VEQ16_07935"
     CDS             <1..624
                     /locus_tag="VEQ16_07935"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016738328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYP63802.1"
                     /translation="LDLGCGGGHVSYRAAPHVARVVAVDVTAEMLAQVCQQAEARGLK
                     NIETRQAAAEALPFAAASFDVVLTRFSAHHWQDFWSGLREARRVLKPGGLAVFIDTIA
                     PAEPGLDTFLQSVELLRDVSHVRNYAAAEWVAALGAAGFILDGFETRRLRLDFRSWTA
                     RTRTPDAMVAAIRQLQQGAPDHAKTRFAIGADGGFEIDVASFRAVAG"
     gene            complement(674..919)
                     /locus_tag="VEQ16_07940"
     CDS             complement(674..919)
                     /locus_tag="VEQ16_07940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HYP63803.1"
                     /translation="MPLIDWNLMLRHIIVNNLKLECQNVLAQIRHALILLRADNRAVT
                     AIEYALIAALIAVVIVGAATQLGTQVSSTFNNVSSEL"
     gene            complement(1132..1205)
                     /locus_tag="VEQ16_07945"
     tRNA            complement(1132..1205)
                     /locus_tag="VEQ16_07945"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1171..1173),aa:Cys,seq:gca)
     gene            1388..>2010
                     /locus_tag="VEQ16_07950"
     CDS             1388..>2010
                     /locus_tag="VEQ16_07950"
                     /inference="COORDINATES: protein motif:HMM:NF013315.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63804.1"
                     /translation="MAVQGARELERNLTERNTMVDCQVRPNHVSDLRVTGAMRVLPRE
                     DFAPAGVNAYADADIPLGDGRYLFNASLTARLAQAVLAASPAHVQAHVLVVGAGSGYL
                     AAILAAAGVSVVSLEEEARLQSDALKTYAPKAEAVTGPLAAGWPAGGPYDVIVVEGAL
                     PAIPPIFIAQLAREGRVVAVLADDADGGIGRAVLAEPAGNGFAVLRL"
BASE COUNT          356 a          556 c          704 g          394 t
ORIGIN      
        1 ctcgatctgg gctgcggcgg cgggcatgtg tcctaccgtg ctgccccgca tgtggcccgc
       61 gtggtggcgg tggatgtgac ggcggaaatg ctggcgcagg tgtgccagca ggccgaggcg
      121 agggggctca aaaatatcga gacgcgccaa gctgccgccg aggcgctgcc tttcgcggcg
      181 gcgagcttcg atgtggtgct gacccgcttc tcggcgcatc attggcagga tttttggtcc
      241 gggctgcgcg aggccaggcg ggtgctgaag cccggtgggc tggccgtgtt catcgacacc
      301 atcgcgccgg ctgagccggg gctggataca ttcttgcaga gcgtggaatt gctgcgcgat
      361 gtctcgcatg tgcgcaatta tgcggccgcg gaatgggtcg cggcgctggg ggcggcgggc
      421 ttcatcctcg atggttttga aacccgtagg ctgcgcctgg atttccgctc ctggacggcg
      481 cgcacgcgca cgccggatgc catggtggcg gcaatccgcc agctgcagca gggggcgcca
      541 gaccacgcga aaacccgctt cgccatcggc gcggatggcg gtttcgagat cgacgtggcc
      601 agcttccggg cggtggctgg atagaaggac agaatttgcc ggcagcgggg cagaagcccg
      661 ccgccggagc agattagagt tcgctgctga cgttgttgaa ggttgaggag acctgcgtgc
      721 cgagctgggt cgcggcgccg acgatgacga cggcgatcag ggcggcgatc agcgcgtatt
      781 cgatggcggt gacggcacgg ttatcggcgc ggagaaggat gagggcgtgg cggatctgag
      841 cgagcacgtt ttgacactcc agtttaaggt tgttcacaat gatgtgacgc aacattaaat
      901 tccagtcaat cagcggcaag tcaatgctga ttcattagaa atctttacct aaatcgcaat
      961 cttaacaact tgaaataatt gaaaaaactt aaattatcct gttcaaacta gaatctcacc
     1021 agaagatcat aagtataaca agttaattag tggtaattta attttgccgt aaaaatgata
     1081 tgcgtcggcc gcgccgcacg gtgaaaaaga tgggaatgtc gggaaatagg ctggaggtcc
     1141 gggcgggaat cgaacccaca tacgcggatt tgcagtccgc tgcatcacca ctctgccacc
     1201 ggaccggagt gtggccccct atatccttgg cctcggcgcc gcggtcaagc cataccggcg
     1261 cgtggggctg cgcaaaatca gggaggcggc gttgttccgg gcaaatgcat gatgaattgg
     1321 taaggcgcgg ttgagttatg ctggcgcggg ccgctataag tgagccaact accggcttgg
     1381 aaggtttatg gcagtgcaag gtgcccgcga gcttgagcgc aacttaactg agcgcaacac
     1441 gatggtggat tgtcaggtcc gccccaacca cgtctctgat ctgcgcgtga ccggggcgat
     1501 gcgcgtcctg ccgcgcgagg atttcgcgcc ggctggcgtc aatgcctatg ccgatgccga
     1561 cattccgctg ggggacgggc gctatctgtt caatgcctcc cttaccgcgc gcctggcgca
     1621 ggcggtgctg gccgccagcc cggctcatgt gcaggctcat gtgctggtgg tgggggcggg
     1681 gtccggctat ctcgccgcca tcctggctgc cgccggtgtg agcgtggtgt cgctggagga
     1741 agaggcgcgg ctgcaatcgg acgcgctgaa gacctatgcc cccaaggccg aggccgtgac
     1801 cgggccgctt gccgccggct ggccggcggg cgggccttat gatgtgatcg tggtcgaagg
     1861 cgcgctgccc gcgattccgc ccattttcat cgcccagctc gcccgcgagg ggcgcgtggt
     1921 ggcggtgctg gccgatgacg ccgatggcgg gatcggccgc gccgtgctgg ccgagccggc
     1981 gggcaatggt ttcgcggttc tgcgtctgtt
//
LOCUS       DASQCV010000522         1545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_942335, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000522 DASQCV010000000
VERSION     DASQCV010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_942335"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VEQ16_07955"
     CDS             <1..220
                     /locus_tag="VEQ16_07955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63805.1"
                     /translation="HELHVGDSKFFLAANPLSRDESDLSACASGQFGEWADRSGQEME
                     SRHFAWILLLLAAAVLSVHLLLLRGGKS"
     gene            496..>1545
                     /locus_tag="VEQ16_07960"
     CDS             496..>1545
                     /locus_tag="VEQ16_07960"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vWA domain-containing protein"
                     /protein_id="HYP63806.1"
                     /translation="MTLLQPIWLLLAIPLGMSLWLWRMPSPLLLAMRLAVMILVLLAI
                     SGLALLLPSRAGTLVVVADRSLSMPADKDEHHKLAIDLVKSGMDPGERLAVVAFGQRA
                     VSERLPQVGKFSGFVNEVGGDASNLAEALEMALALIPAESPGKVLVLSDGQWTGRDPQ
                     AAAARAAARGIALDYRPLQRTAANDLAIDRIDVPQSVNAGESFLITAWVQAPTAQDAD
                     FELRRGGKRLLGGKRKLTSGLNRLTFRDQAGSPGTQSYTMHIKGQGEDPVPENNTAKL
                     LVGIAGPRPILLATAAAPAGLGKLLLAGGLKIHVSKPEECSWSLEGLSRYSALILENV
                     PAEKIGFAGMQTLAAW"
BASE COUNT          277 a          461 c          486 g          321 t
ORIGIN      
        1 tcatgaatta catgtggggg atagcaaatt cttcctggcg gccaatccgc tcagccggga
       61 tgaatccgat ctgtccgcgt gcgcttcggg ccaatttgga gaatgggccg accgctccgg
      121 ccaggaaatg gagtcccgcc atttcgcctg gatcctgctg ctcctggcag ctgcagtgtt
      181 atccgttcac ttgcttctcc ttcgaggagg aaaatcatga cggcctttat tggaatcggc
      241 attgtcgaaa tggtgatctt ggctgtcctg gcgcttggga tcggctttgt gatcatttac
      301 atgttcatgg gcaaatccga tgatgattcg aaatgacgct gacactgttt gcaactaaac
      361 cacgaggtga aaaatggagg gcggcatgag tgtatcttgg ataatcttga tccctgttgg
      421 tctcttggtc attggcggcg cctttgccct catctactgg tgggtaggcc gaagcgacaa
      481 tgacggaaag caatcatgac cctgcttcaa cccatctggc tgctcttggc catcccgctg
      541 gggatgtcgc tgtggctgtg gcgcatgccg tcgccgctgc ttttggccat gcgcctggcg
      601 gtcatgatcc ttgtattgct ggccatcagc gggttggcgc tgttattgcc aagccgggcg
      661 ggaacgcttg tggtcgtggc cgaccgcagc ctgtccatgc cggcggacaa ggatgagcac
      721 cacaagctgg ccatcgacct ggtcaagtca ggtatggatc cgggcgagcg cctggcggtg
      781 gtggccttcg gccagcgcgc cgtcagcgag cgattgcccc aagtcggcaa attctccggt
      841 ttcgtcaatg aagtgggcgg cgatgcctcc aatctggccg aggcgctgga aatggcgctg
      901 gccctgatcc ccgcggaatc tcccggcaag gtcctggtgc tgtcggatgg gcagtggacg
      961 gggcgtgatc cgcaggcagc ggcggcccgt gccgccgcac gcggcatcgc cctcgattat
     1021 cgccccttgc agcgcaccgc cgccaacgac ctggcgatcg atcgcatcga tgtgccccag
     1081 agcgtgaacg ccggcgaatc attcctcatc acagcctggg tgcaggcacc gaccgcacag
     1141 gatgcggatt tcgagctgcg ccgcggcggc aagcggctgc tgggaggcaa acgcaagcta
     1201 acttccggcc tcaaccgctt gacctttcgc gatcaagccg gcagtccggg cacgcagtcg
     1261 tacaccatgc acatcaaggg ccagggcgag gatccggtgc ctgaaaacaa tacggcaaaa
     1321 ttgctggtcg gcattgccgg tccgcggccg atcctgctgg cgaccgctgc cgccccggcc
     1381 ggcctgggca aactccttct ggccggcggc ttgaaaatcc acgtctccaa gcccgaagag
     1441 tgttcctggt ccctggaagg cctgtcgcgc tacagcgccc tgatcctgga aaatgtgccg
     1501 gcggaaaaga tcggctttgc cggcatgcag accctggcgg cgtgg
//
LOCUS       DASQCV010000523         1972 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2931142, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000523 DASQCV010000000
VERSION     DASQCV010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1972)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1972)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1972
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2931142"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(127..612)
                     /locus_tag="VEQ16_07965"
     CDS             complement(127..612)
                     /locus_tag="VEQ16_07965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYP63807.1"
                     /translation="MAEENAAAERPERESRPSPIDIHVGSRIRMRRTLLGMSQERLGD
                     ALGLTFQQVQKYERGVNRVGASRLFDISRVLDVPISYFFDDMPEGMSETPISGPRGRV
                     YGFAEQQEPFNAGVDDQLTKRETLELVRAYYRIPDAAMRKRMFDLMKSLAPPEAAFEA
                     S"
     gene            complement(840..>1972)
                     /gene="lnt"
                     /locus_tag="VEQ16_07970"
     CDS             complement(840..>1972)
                     /gene="lnt"
                     /locus_tag="VEQ16_07970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HYP63808.1"
                     /translation="GAARLLVFAGAWTLSNLAQQFWYSGFPWNYWGTAWTIPGTLGDI
                     FIQPAAWVSVHGLTLLTVLLAGLPTLRRRGLEILLSALLLWGGFGWLRLQNPVPSTGH
                     TIALIQPNAPEPPDFSRPALEASWQRLLAMSSAALSAQPAAIIWPEAASPWLLASDAT
                     ARAQLTAVTGTTPVLAGSLRVESPTDFRNSLVVLAGPGPALAYYDKWKLVPFGEYMPK
                     WIPLKIIPDMLGSGLIPGTGPAAIQIDGLPPFGPMICYEDVFPGQMVNQTNRPAWLVV
                     VTDDAWFGNSSGPRQHFANARLRAVEEGLPLARAANSGPSAMIDPYGRVIASLPLDTQ
                     GILTAPLPKNTAPTFFSRHGLKIPLILGVVTIIAGLLVSGFI"
BASE COUNT          406 a          533 c          671 g          362 t
ORIGIN      
        1 acacacgtgc tgggatggcc ccttcttttt ctgatccggg cgggggttct aggggcctac
       61 ggcccctagc gcggggtgca ggtggcgcgc agcccccctg caagtcacaa gcaccagcct
      121 ggccgctcag ctcgcctcga aggcggcttc cggcggggcg agggatttca tgaggtcgaa
      181 catgcgtttg cgcatggcgg catcggggat gcggtaatag gcgcggacga gttcgagtgt
      241 ttcgcgtttg gtgagttggt cgtcgacgcc ggcgttgaag ggttcctgct gttcggcgaa
      301 cccgtagacg cggcctcggg gccctgagat gggggtttcg gacatgcctt cgggcatatc
      361 gtcgaagaaa taggagatgg gtacgtcgag gacgcgggag atatcgaaca ggcgggaggc
      421 gccgacgcga ttgacgccgc gctcgtattt ctgcacctgt tggaaggtca ggcccagcgc
      481 atcgccgagg cgttcctggg acatacccag aagagtgcgg cgcatacgga tgcgggatcc
      541 gacatggata tcgatagggc tgggacggct ctcacgttcc ggacgctctg cggcggcatt
      601 ctcttcggcc ataactactc tactactcca actggcggtg gcgagcaccg cgtgaggctg
      661 gtctctggct gcacggccag ttgcgagatt ccaatgtata gaaaatagcg cgtcaaactt
      721 gccgggttct ctacatcgga ttgcaaaaga ttaacagtgc ttaacgatcg tggcaatgca
      781 aatcttcgct aattgcatta ttaaatagac agctcgaccg caatcgttaa tttattacat
      841 taaataaagc cggaaactaa caagccagca ataatcgtta caactcctag tattagcgga
      901 attttcagcc cgtgccgaga aaaaaatgtg ggggccgtat ttttgggcaa gggggcagtg
      961 agaatacctt gcgtatcaag cggtaaagag gcgatcacgc ggccatatgg atcaatcatc
     1021 gcggacgggc cggaattcgc ggcgcgcgcg agcggcagcc cctcctccac ggcgcgcaga
     1081 cgggcattgg caaaatgctg gcgcgggccg ctcgaattgc cgaaccaggc atcgtcggtg
     1141 accacaacca gccaagctgg tcgattcgtc tgattcacca tctggccggg gaaaacgtcc
     1201 tcgtaacaga tcattgggcc gaaaggcggg agaccgtcga tctggatggc ggcggggcca
     1261 gtgccgggga tgaggccgct gcccagcatg tccgggatga ttttcagcgg gatccatttg
     1321 ggcatgtatt cgccaaacgg caccagcttc catttatcat aataggccaa agccggaccg
     1381 gggccggcca aaacgaccag ggaattgcgg aaatcggtcg gcgattcaac gcgcaggctg
     1441 ccggccagta ccggcgttgt gccggtgacg gcggtgagtt gggcgcgggc ggtggcatcg
     1501 ctggccagca gccaggggct ggcggcttcg ggccagatga tggcggcggg ctgggcgctg
     1561 agtgcggcgc tgctcatggc gagcaggcgc tgccagcttg cctcaagcgc agggcgggag
     1621 aaatcgggcg gctcgggggc gttgggttgg attagagcga tggtgtggcc agtcgaggga
     1681 acaggatttt gcagccgcag ccagccgaat ccgccccaga gcagcagcgc ggagagcagg
     1741 atttctaatc cccgccgccg caatgtcggt aggccggcca ggagaacggt gagcagcgta
     1801 agcccatgca cgctcaccca ggcggcgggt tggatgaaaa tatcgccgag tgtgccgggg
     1861 atggtccaag ccgtgcccca gtaattccag gggaatcccg aataccagaa ttgctgggcc
     1921 agattggaca gggtccaggc gcccgcgaag actagcaacc gcgcggcgcc gg
//
LOCUS       DASQCV010000524         1702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1273378, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000524 DASQCV010000000
VERSION     DASQCV010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1273378"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..183)
                     /locus_tag="VEQ16_07975"
     CDS             complement(<1..183)
                     /locus_tag="VEQ16_07975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011390256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase"
                     /protein_id="HYP63809.1"
                     /translation="MRLSANISTLFTALPPVARIEAASRAGFRGVEMQFPYEHEPAEL
                     AGAARAAGVEFVLINMP"
     gene            complement(185..922)
                     /locus_tag="VEQ16_07980"
     CDS             complement(185..922)
                     /locus_tag="VEQ16_07980"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007002403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP63810.1"
                     /translation="MERIALITGGGSGIGKAAGIKLAQAGWRVVLAGRRAAVLEEAAA
                     AHENLMALQADVTDENSVQALFGAVEKRFGRLDLLFNNAGIFTPATPFAETSLGSFTA
                     SLSVNVTGAFLCARAAFRIMAAQTPRGGRIINNGSVSAYVPRPQAVPYTVSKHAITGL
                     TRSIALEGRAFNIACGQIDIGNAATELTAGIARGSMQADGSMAPEPMMDVEHAASSVL
                     HMASLPLSANVQFMTVMATSMPFIGRG"
     gene            998..>1702
                     /gene="dapF"
                     /locus_tag="VEQ16_07985"
     CDS             998..>1702
                     /gene="dapF"
                     /locus_tag="VEQ16_07985"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011632202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HYP63811.1"
                     /translation="MSLPFLKMHGAGNDFVVLDGRAAPVHLPPPMVRHIADRRRGVGC
                     DQLVIIEPDESGADAFMRILNADGTESGACGNATRCVAALLAEETGARMVAIRTISGL
                     LRAEILGPGLVEVDMGAPLLEWGDIPLSQPADTLHLSLALGPVSDPAACSMGNPHATF
                     FIDDFAHLPIEMLGPKLETHRLFPERANIGFARIESPSRIRLRVWERGTGLTLACGSG
                     ACATLVNAHRRGLTGRQ"
BASE COUNT          279 a          554 c          563 g          306 t
ORIGIN      
        1 tggcatgttg atgagcacga attcaacacc ggccgcccgc gccgcgccgg cgagttcagc
       61 cggttcatgc tcatagggga attgcatttc cacgccgcgg aacccggcgc gggaagcggc
      121 ttcaatgcgc gccacagggg gcagggcggt gaagagagta gaaatgttgg ccgagaggcg
      181 catttcagcc gcgtcctatg aagggcatgc tggtcgccat caccgtcatg aattgcacat
      241 tggccgagag cggcaggctg gccatgtgca gcactgaaga ggcggcatgc tccacatcca
      301 tcatcggctc cggcgccatg ctgccatcgg cctgcatgga gccgcgcgct ataccggcgg
      361 tgagttcggt cgccgcattg ccgatatcga tctggccgca ggcaatgttg aaagcccgcc
      421 cttccagcgc gatgctgcgg gtaaggccgg tgatggcatg ttttgacaca gtatacggca
      481 ccgcctgcgg gcgcggcaca taggcggaga cggagccatt attgatgatg cgcccgccgc
      541 gcggggtttg cgcggccatg atgcggaagg cggcgcgggc gcagaggaag gcacccgtga
      601 cattgacgct gagcgatgct gtgaaactac ccaggctggt ctccgcaaag ggcgtggctg
      661 gtgtgaaaat accggcattg ttgaacaaga gatcgagccg gccgaagcgt ttttcaaccg
      721 cgccgaacaa ggcctgcaca gagttttcgt cagttacatc cgcttgcaag gccatcaaat
      781 tttcgtgcgc ggccgccgct tcctccaaaa ccgccgcgcg gcgccccgcc agcaccacgc
      841 gccagcccgc ttgtgctagt tttatccccg ccgctttgcc gataccgctg ccgccgcctg
      901 tgatgagcgc gattcgttcc atgatcgtag tatgacgctg atctgccctg cgggcaacag
      961 gtttgcggcg gcggcggcgg cgggctattt gagccccatg tcccttccct tcctcaagat
     1021 gcacggcgcc gggaatgatt tcgtggtgct tgatggccgt gcggcgccgg tccacctgcc
     1081 gcccccaatg gtgcgtcaca ttgccgaccg ccgccgcggg gtggggtgcg accagctggt
     1141 catcatcgag ccggacgaga gcggggccga tgcgttcatg cgcattctca acgcggacgg
     1201 cacggaatcc ggcgcctgcg gcaatgccac gcgctgcgtc gcggccttgc tggccgagga
     1261 gaccggggca cgcatggtgg ccatccgcac catctccggc ctgctgcggg ccgagattct
     1321 ggggccgggc ctggtggaag tggatatggg cgcgcctttg ctggaatggg gcgatattcc
     1381 gctgagccag cccgccgata cgctgcatct ctcgctggcg ctggggccgg tctccgaccc
     1441 cgccgcctgc tccatgggca acccgcacgc cactttcttc atcgacgatt ttgcccatct
     1501 gcccatcgag atgctcgggc cgaagctgga gacgcatcgc ctcttccccg aacgcgccaa
     1561 tatcggcttc gcgcgcatcg agagcccgtc gcgcatccgc ctgcgtgtgt gggagcgcgg
     1621 cacggggctg acgctcgcct gcggctccgg cgcctgcgca accctggtga atgcgcatcg
     1681 ccgcggcctc accgggcgcc ag
//
LOCUS       DASQCV010000525         2110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1440592, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000525 DASQCV010000000
VERSION     DASQCV010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2110
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1440592"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..401
                     /locus_tag="VEQ16_07990"
     CDS             <1..401
                     /locus_tag="VEQ16_07990"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HYP63812.1"
                     /translation="MSEAALHGLMAASDVVLSLHRAEGFGLIPATAALLGIPVVATAY
                     SGNLDFMSPDSSGLVQYRMVPVSGPDSIYKIPGAQWAEPDIGHAAAWLRRLFDDPALR
                     ISLGTAGQRHALQALSLAQLDAALAANGIT"
     gene            484..1467
                     /gene="gmd"
                     /locus_tag="VEQ16_07995"
     CDS             484..1467
                     /gene="gmd"
                     /locus_tag="VEQ16_07995"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011633054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008446 - GDP-mannose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HYP63813.1"
                     /translation="MPTCLITGITGQDGAYLAQLMLQKGYRVVGLLRRSASSDVIGQR
                     LRWLGIIDDVELVDGDLIDISSLIRVLQKIQPDEIYNLAAQSFVATSWHQPLLTSEVT
                     ALGATKMLEAIRITGGKARFYQASSSEMYGLIQEAKQSEKTPFYPRSPYAVAKLYAHW
                     MTVNYRESFGLHASSGILFNHESPLRGIEFVTRKITDGVARIKLGLAKELALGNLEAK
                     RDWGHARDYVRAMALMLQQDKPDDYVIATGQTTSIREFCRIAFSYAGLNFEDHVVTRA
                     DLLRPAEVDVLLGDPSKAQSKLGWKPETSLTDMAAEMVEADLARHRALQTN"
     gene            1520..>2110
                     /locus_tag="VEQ16_08000"
     CDS             1520..>2110
                     /locus_tag="VEQ16_08000"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HYP63814.1"
                     /translation="MTALSPLPGPILITGAGGFVGRHVIAALTTASPQTDIIRSSANI
                     TDAEAVRVLIESARPACCLHLAAIAAIGVAGAEPDRAWAVNLHGTLNLAAAIREFAPS
                     CRLIFVSSADIYGASFRSGEALDEQALLAPLNTYGATKAAADLALGAMAAAENLNVLR
                     LRAFNHTGPGQSEHFAVPAFARQIALAEAGLAEPVIR"
BASE COUNT          387 a          760 c          608 g          355 t
ORIGIN      
        1 caatgagcga agcggcactg cacgggctga tggcggcgag cgacgtggtt ctctctttgc
       61 accgcgccga aggcttcggg ctcatccccg ccacggccgc tttgctcggc attcccgtgg
      121 tggccaccgc ctattccggc aatctcgatt tcatgagccc ggacagctcc gggctcgtgc
      181 aataccggat ggtgccggtg agcggcccgg acagcatcta taaaatcccc ggcgcccaat
      241 gggccgagcc ggatatcggg cacgccgccg cctggctgcg ccgcctgttc gatgatccgg
      301 ccctgcgcat aagcctcggc accgccggac agcgccacgc gttgcaggcc ctcagcctcg
      361 cgcaactgga tgcggcgctc gccgccaatg gcataacatg aaacgacctt catgaagccg
      421 cggcttgcgc ggcgccaaac ttctatctaa tcaaaaacca cgtcatgagt tggaggtaat
      481 tgcatgccga cctgcctgat cacgggcatc acgggacaag acggtgccta tctggcacag
      541 ctcatgctcc agaaaggcta ccgcgtcgtc ggcctgctgc gccgctccgc atcgtcggac
      601 gttatcggcc agcgcctgcg ctggctcggc atcattgacg atgtggaact tgtcgatggc
      661 gacctgatcg acatctccag cctgatccgt gtgctgcaga aaatccagcc tgacgagatc
      721 tataatctcg ctgcgcagag tttcgttgcc acctcctggc accagccgct gctcacgagc
      781 gaggtcaccg ccctcggcgc cacgaagatg ctggaagcca tccgcatcac cggcggcaag
      841 gcgcgcttct accaggcctc gtcgtccgaa atgtatgggc tcatccagga ggctaagcag
      901 agcgagaaaa ccccgttcta cccgcgctcg ccctatgccg tggcgaaact ctacgcgcac
      961 tggatgacgg tgaattaccg cgagagtttc ggcctccatg cctcctcagg catcctgttc
     1021 aatcacgaaa gcccgctgcg cggcatcgaa ttcgtcaccc gcaaaatcac cgacggcgtg
     1081 gcacgcatca agctcggctt ggccaaggaa ctggcgctcg gcaatcttga agccaagcgc
     1141 gactggggcc atgcgcgcga ctatgtgcgc gccatggcgc tgatgctgca gcaggacaag
     1201 ccggatgatt acgtcatcgc cacgggccag accaccagca tccgcgaatt ctgccgcatc
     1261 gccttctcct atgccgggct caatttcgag gatcatgttg tcacccgcgc cgatctgctg
     1321 cggccggcgg aagtcgatgt gctgctgggc gacccctcga aggcgcagag caagctcggc
     1381 tggaagccgg aaaccagcct caccgacatg gccgccgaaa tggtcgaagc cgacctcgcg
     1441 cggcacaggg ccctgcaaac caactaacga tggcgcaatg acgcgccgcc cgtcagcgtg
     1501 aaccaggagc cgtgccgcca tgaccgccct cagccccctg cccggaccga ttctgatcac
     1561 gggggctggc ggcttcgtcg ggcggcatgt catcgccgcc ctcaccacgg ctagtccaca
     1621 aacggacatc atccgctcca gcgctaacat cactgatgcc gaagccgttc gtgtactgat
     1681 cgaatcggcg cggcccgcct gctgcctgca tctcgccgcc atcgccgcaa tcggcgtggc
     1741 aggggccgag ccggaccgcg cctgggcggt caatctgcac ggaacgctca acctcgccgc
     1801 cgccatacgc gagttcgccc cgtcctgccg gctcatcttc gtctcgtccg ccgacatcta
     1861 cggcgccagc ttccgcagcg gcgaagcgct ggatgagcag gccctgctcg cccctctcaa
     1921 cacctacggc gccaccaagg ccgccgccga tctcgccctc ggcgccatgg ccgccgccga
     1981 aaatctcaac gtgctgcgcc tgcgcgcctt caaccatact ggccccggcc agagcgagca
     2041 tttcgctgtc cccgccttcg cccggcagat cgccctggcc gaagccggac tcgcagaacc
     2101 cgtcatccgc
//
LOCUS       DASQCV010000526         2506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1441066, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000526 DASQCV010000000
VERSION     DASQCV010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1441066"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..185
                     /locus_tag="VEQ16_08005"
     CDS             <1..185
                     /locus_tag="VEQ16_08005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63815.1"
                     /translation="EYNDELARAGFVDIRIKPTRVYSTEDARAWLASGSLDVDSIAPQ
                     VEGKFMSAFIGARKPG"
     gene            complement(198..2063)
                     /gene="selB"
                     /locus_tag="VEQ16_08010"
     CDS             complement(198..2063)
                     /gene="selB"
                     /locus_tag="VEQ16_08010"
                     /inference="COORDINATES: protein motif:HMM:TIGR00475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HYP63816.1"
                     /translation="MKNIIVGTAGHIDHGKTALVKALTGIDADRLEEEKRRGITIDLG
                     FAHLQLTPEARLGFVDVPGHERFVKNMLAGVSGIDVVLFVIAADESIKPQTREHFDIC
                     RLLGIPRGVIALTKADLVEHDLLELVRLEVEELVAGSFLEGAAVVPVSSVTGAGLEEL
                     KGELARVAAEAPEKDTQGHFRLPIDRVFSVRGFGTVVTGTLVSGSVGKDQEVEVYPRG
                     RRLRVRGVEVHGASAERALAGQRTAVNLTDIEPDQLARGDVLSEPERFRAVTRVDCRL
                     ELLGSSKPLKHRAPVHFHSGTAEIEAEVRLLGGIAALEPGGVAYAQLVARQPALVLPG
                     DRFIIRRFSPVVTIGGGVVLDNGQRRYRAGEDAAARLKVLAGGDLAARVAVLVKEAPF
                     GLGMAELVWRTGMREQQIGAAKEGLEVLTQPQAWYLDRRWFQEARNRLIQSVGKFHQE
                     KPLLAGIAKQDLRSRELAAAPPFVVDALLADAAELLVEGETVRLRRHRVVLQQDEQQA
                     RAAIEEAFERAGLATPAVPEVLAQSGVEPGRARSLLQLLLREKRLVRVSDELVFHHSA
                     IGQLRQMLAERKATRFNVAAFKDWTGVSRKYAIPLLEYLDREHITRRDGNERLVL"
     gene            2050..>2506
                     /locus_tag="VEQ16_08015"
     CDS             2050..>2506
                     /locus_tag="VEQ16_08015"
                     /inference="COORDINATES: protein motif:HMM:TIGR03436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HYP63817.1"
                     /translation="MMFFISLVPIVLPAQTPTFRAGVTLVKVDVAVTDPSGRMIPDLT
                     RNDFEVFDEQAPQPIAYFDHESEPLDLLLLLDVSGSMHRSLMELASTARASLRPLGVR
                     DRVAVMLFARQSAVRQPFTADFGLVESEIAGAVKAQDLGSGTAINSAILS"
BASE COUNT          420 a          943 c          700 g          443 t
ORIGIN      
        1 ccgaatataa cgacgagctg gccagggccg gtttcgtcga tatccgcatc aagcctacgc
       61 gcgtctacag caccgaggat gcccgcgcct ggctggcctc gggtagtctt gatgtggact
      121 cgattgcccc gcaagtcgaa ggcaaattca tgagcgcttt catcggcgcc cgcaaacccg
      181 gctaagcccc gatccagcta caagaccagc cgttcgttgc catcgcggcg cgtgatgtgt
      241 tcgcggtcca ggtattcgag cagcggaatc gcatactttc gcgaaacgcc cgtccagtct
      301 ttgaacgcgg ccacattgaa tcgcgtggcc tttcgttctg ccagcatctg ccgcagctgg
      361 ccgatcgcgg agtgatggaa caccagctca tcactaaccc gaaccagccg cttctcacgc
      421 agcaggagct gcagcaagga gcgggcccgc cccggctcga cccccgactg cgccagcacc
      481 tccggaacgg cgggagtggc cagcccggca cgctcgaagg cctcctcgat ggccgcgcgc
      541 gcctgttgct catcctgctg cagcacgacc cggtggcggc gcagccggac ggtctcgccc
      601 tccaccaaca gttccgcagc atccgccagc agggcatcca ctacgaatgg cggcgccgcc
      661 gccaattccc ggctgcgcag gtcttgtttg gcgattcccg caagcagtgg cttttcctgg
      721 tgaaacttcc cgaccgattg aatcagccgg tttcgcgctt cctgaaacca gcgccggtcg
      781 agataccatg cttgcggctg cgtaagcacc tccagccctt ctttggccgc cccgatctgc
      841 tgctcccgca tccccgtacg ccacaccagt tcggccatcc ccaagccgaa cggcgcctcc
      901 ttgaccagca ccgcgacgcg agccgccagg tctccacctg caagcacctt cagccgcgct
      961 gccgcgtctt caccggcgcg atagcgccgc tggccgttgt ccagcaccac cccgccgcca
     1021 atcgtcacca ccggcgaaaa ccgccggatg atgaaccgat cgcccggcag cacgagcgcc
     1081 ggctgccgcg ccaccagttg cgcgtaggcc accccgcccg gctccagagc ggcgatcccc
     1141 cctagcagcc gcacttcggc ctcgatttcc gctgtccccg aatggaagtg tacgggggcg
     1201 cggtgcttga gcggcttgga ggagccgagc aactccagcc ggcaatccac acgcgtcacc
     1261 gcgcggaacc gctccggctc cgagagcacg tcgccgcgcg ccagttggtc cggctcgatg
     1321 tctgtgaggt tcaccgccgt tcgctgcccg gccagcgcgc gttccgccga tgcgccatgc
     1381 acctcgaccc cgcgcacgcg cagccgccgt cctcgtggat acacctccac ttcctgatct
     1441 ttgcccaccg aaccggaaac cagcgtcccc gtcaccacgg tcccgaagcc tctcaccgaa
     1501 aacactcggt cgatcggcaa tcggaaatgt ccctgcgtgt ctttttcggg cgcctccgct
     1561 gccacccgcg ccaactcccc cttcagctcc tccaggcccg cgccggtcac cgagctcacc
     1621 ggcaccaccg ccgcgccttc cagaaacgag cccgccacca gttcctccac ctccaggcgc
     1681 accagctcca gcaggtcgtg ctctaccagg tcggctttgg tgagcgcaat cacgccccgg
     1741 gggattccca gcagccggca gatgtcgaaa tgctcgcgtg tctgcggctt gatcgattca
     1801 tcggccgcga tcacgaatag caccacatcg atgccgctga ccccggccag catgtttttg
     1861 acaaatcgct cgtgccccgg cacatccacg aaacccagcc gcgcctccgg cgtcaattgc
     1921 agatgagcga atccgaggtc gatggtgatg ccgcgccgct tctcttcttc cagccggtct
     1981 gcgtcgatgc cggtcagggc cttgaccaac gccgtcttgc catggtcgat atgcccggcc
     2041 gtgccgacaa tgatgttctt catcagtctc gttcccatcg tactacccgc ccagaccccg
     2101 accttccgcg ccggcgtgac gctggtcaaa gtcgacgtag ccgtcaccga cccatcgggc
     2161 cgcatgattc ccgatctcac ccggaatgat ttcgaagtct tcgacgaaca ggcgccccag
     2221 ccgattgctt acttcgacca cgagtcggaa ccgctggacc ttttgctgct gctcgacgtg
     2281 agcggcagca tgcaccgttc gttgatggaa ttggcctcga ccgcgcgcgc ctccctgcgc
     2341 ccgttgggcg ttcgcgaccg ggtggcggtg atgctgttcg ctcgccaatc cgccgtgcgg
     2401 cagcccttca ccgccgattt tggtctggtg gaatcggaaa tcgctggcgc cgtgaaggcc
     2461 caggatctcg gcagcggcac cgccatcaac tcggccatcc tgtcgg
//
LOCUS       DASQCV010000527         1899 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_775733, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000527 DASQCV010000000
VERSION     DASQCV010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_775733"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            186..1625
                     /locus_tag="VEQ16_08020"
     CDS             186..1625
                     /locus_tag="VEQ16_08020"
                     /inference="COORDINATES: protein motif:HMM:TIGR00797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HYP63818.1"
                     /translation="MTIGSASIAQPATAISVTKPPAARTRLLLEGPIISTLLRLAAPN
                     VVVNVVLIAVTVTVDAHFVGRMGSDALAGLSLVFPLIMLMQQMANSSMGGAIASAIAR
                     AIGAGRYADASALVVHGIIIAAAMAGIFSLALLLGGSTIYGLMGGSGEVRAAAVEYSN
                     AIFAGAFAYWLLSTLTSAVRGAGQAAVLAVVYVAAEAVHIVLVPLLMFGIGPLPPLGI
                     AGAGIATVTSFAASSVVLAWYIASGRTAIRPTLHGIRLDRRLFIEILRVGAPMSLQPI
                     LNNLALAILTGFVGALGATQLAGFGVAVRLEYLLYPLSFGLGAGVLAMVGTNIGAGNF
                     ARAERIAWTAAALAAGITGCIGLFGVTLPDVWTSLFTKAPDIHVLAAGYLAITGVAYA
                     FCGLGLTLASAFQAAGRPLWPLVGITGRAVVVSAGGWIVVHLPGMALGGLAAVAAAGL
                     TVYGASLAIAFRLWRMWQPQTASAGAKPE"
     gene            1653..>1899
                     /locus_tag="VEQ16_08025"
     CDS             1653..>1899
                     /locus_tag="VEQ16_08025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63819.1"
                     /translation="MLATCTSALLATVMGLTGLTRAIGQNLCHPALTLNEVEFSAMVP
                     PTQERTWSAVMSVDASACTADSKGYFEIVFTRLSENAP"
BASE COUNT          299 a          617 c          591 g          392 t
ORIGIN      
        1 tactggctcc ggctaacatt ccggagagag catgagatat tctcaggccg ggccgagaaa
       61 tgatgctttg ccgtgcgctg gggaattgaa tagttcactc agcgtcgggc tcccacgcag
      121 ccgcccggct ttcccaagac gctccgtcca agcgctgctc cagtcccaga aggggcagga
      181 gtgccatgac gatcggaagc gcctcaatcg cccagcctgc aacagcaata tctgtcacca
      241 agccgccggc tgcgcggaca cgtcttcttc tcgaaggacc gatcatttcg acgctgctgc
      301 gccttgcggc gccgaacgtc gtcgtcaacg tcgtgctcat cgccgtcacc gtgacggtcg
      361 atgcacattt cgtcggccgg atgggatcgg acgcgttagc cggactgtcg ctggtttttc
      421 cgctcatcat gctgatgcag cagatggcca attcgagcat gggcggcgcc atcgcgtccg
      481 ccatcgcgcg cgctatcggc gccggccgct acgccgacgc ttcggcgctt gtggttcacg
      541 gcatcattat cgcggccgcg atggccggta tcttcagcct agcgctgctg ttgggcggga
      601 gcacaattta cggcttgatg ggcggcagcg gcgaagtgcg ggccgccgcc gttgaatatt
      661 cgaatgcaat ctttgccggc gccttcgcct attggctgct cagcactttg accagcgccg
      721 tccgcggcgc gggccaggcg gcggtattgg cggtggtgta cgttgctgcc gaggccgtgc
      781 acatcgtgct ggtacccctc ctgatgttcg gcatcgggcc actcccgccg ctcggaatcg
      841 ccggtgcggg catcgccact gtgacatcgt ttgcagcgtc gagcgtcgtg cttgcttggt
      901 acatcgcttc ggggcggacc gccatcaggc ccacgctgca cggcatccgc ctcgatcggc
      961 ggctgttcat cgagattctg cgcgtcggcg cgccgatgtc gctgcagcca atcctcaaca
     1021 atctggcgct tgccatactc acgggcttcg tcggtgcctt gggcgcgacg caactcgccg
     1081 gcttcggcgt cgccgtgcgc ctcgaatatc tgctctaccc gctctcgttc ggtttgggcg
     1141 ccggggtgct cgcgatggtc ggcacaaata tcggcgccgg caattttgcg cgggccgagc
     1201 gcattgcatg gaccgcagct gcgcttgcgg caggtatcac cggatgcatc ggactgttcg
     1261 gcgtaacgct gcctgatgtt tggacgagct tgttcaccaa agcgccggac attcatgtcc
     1321 tagcggcggg ctatctcgcc atcacgggag tcgcttacgc cttctgcggc ttgggactga
     1381 cattggcatc cgcatttcaa gcagcaggcc gcccgctatg gcccctcgtc ggcattaccg
     1441 gccgcgcagt cgtcgtctct gcaggcggct ggatcgtggt gcatctccct ggcatggcgc
     1501 tgggcggtct cgccgcggtc gccgccgcgg gcctgacagt ctacggcgca agtctcgcga
     1561 tagctttccg cctctggcgg atgtggcagc cgcagacggc atcggctggc gccaaacctg
     1621 aatagccctt ccaacatcct gcggaggaga caatgcttgc gacctgcaca tcggcgcttc
     1681 tggccaccgt catgggcctg actggcctca cccgcgcgat cggacaaaat ctctgccatc
     1741 ccgctttgac gctcaatgaa gttgaatttt cagccatggt gccgcccacc caggagcgga
     1801 cttggagcgc agtcatgtcg gtcgatgcat cagcctgcac ggcagactcc aaaggatatt
     1861 tcgagatcgt gttcacgagg ctgagcgaga acgcacccg
//
LOCUS       DASQCV010000528         1666 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2435654, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000528 DASQCV010000000
VERSION     DASQCV010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2435654"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..1133)
                     /locus_tag="VEQ16_08030"
     CDS             complement(75..1133)
                     /locus_tag="VEQ16_08030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HYP63820.1"
                     /translation="MPSLFDPLQLGDITIPNRIIMAPLTRSRAGAERIPNKLMAEYYA
                     QRAAAGLIISEATSVAPMGVGYADTPGLWSTEQVEGWKIVTKAVHNAGGRIFAQLWHV
                     GRVSAPMFLNGELPVAPSAIRPAGHVSIVRPKQDYVTPRALDIKEIPGIIEAYRKAAM
                     NAQMAGFDGVELHGANGYLLDQFLQDGTNHRDDEYGGAIENRARLLLEATDAAASVWG
                     PDLVGVHLAPRGDSHDISDSNKLATFSYVARELDERGIAFLCVRERSGNDAVSPALRR
                     LFSGVFIANEGYTAESAQAALDEGAADAVAFGKPFIANPDLVARIRNKAAWNEVDPGT
                     FYAPGPQGYTDYPVLETI"
     gene            complement(1147..1473)
                     /locus_tag="VEQ16_08035"
     CDS             complement(1147..1473)
                     /locus_tag="VEQ16_08035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYP63821.1"
                     /translation="MTIQDAPPQNHDEAFKALANPMRRKILAALKAPEQNFPGQEHPY
                     EWGVCAGKIESAFGLSQSTISAHLASLHQAGLITAKKCGQWIFYKRDEAAIAAVLSHL
                     HSELSS"
BASE COUNT          290 a          474 c          561 g          341 t
ORIGIN      
        1 ctagagtctt cagctaaaag ctgaagactc taggtttttg tttgagcggg caatagcgtc
       61 tagcccaagc ggatttagat ggtttcgagt acgggataat ccgtatagcc ctgtgggccc
      121 ggcgcataga aggtgccggg atcaacctcg ttccatgccg ctttgttacg gatacgtgcc
      181 actaggtccg ggttggcgat gaagggcttg ccgaacgcaa cggcatctgc cgcgccttca
      241 tctaaggcgg cctgggcgct ttcggcggta tagccttcat tggcgatgaa aacgccgctg
      301 aagaggcggc gcagggcagg gcttacggca tcgttgccgg agcgctcgcg tacgcagagg
      361 aaggcgatgc cgcgctcatc cagctcgcgc gccacgtagg agaaggtggc aagcttgttg
      421 ctgtcgctta tgtcgtggga atccccgcgc ggggcgagat gcacgccgac caggtccggc
      481 ccccagacgg aggcggcggc gtcggtcgct tccagcagca gccgggcgcg gttctctatg
      541 gcgccgccat attcatcgtc gcggtgattg gtgccgtcct gcaggaactg gtcgagcaga
      601 tagccattgg cgccatgcag ctcgacgccg tcgaacccgg ccatctgcgc attcatcgcc
      661 gccttgcggt aggcctcgat gatgccgggt atttccttga tgtccagcgc gcgcggcgtg
      721 acataatcct gcttgggccg cacgatgctc acatggccgg ccgggcggat ggcgctcggc
      781 gcaacaggca gctcgccatt cagaaacatg ggtgcggaaa cgcggccgac atgccagagc
      841 tgggcgaaaa tccgcccgcc ggcattatgc acggccttgg taacgatctt ccagccttcg
      901 acctgctcgg tggaccacag gcccggcgtg tcggcatagc ccacgcccat cggagcgaca
      961 gaggtggctt ccgagataat gagcccggcg gcggcgcgct gcgcgtaata ttccgccatc
     1021 aatttattgg ggatgcgctc agcgcccgcg cgcgagcggg tgaggggcgc catgatgatg
     1081 cggttgggga tggtgatatc gccgagttgc agcgggtcga acaggctggg catgggtctc
     1141 aatccttcaa gatgaaagtt cggaatgtag atgggagagg acggcagcga tggccgcctc
     1201 atcgcgcttg tagaaaatcc attggccgca ttttttggct gtgatgagcc cggcctggtg
     1261 cagggaggct agatgcgctg agatggtgga ttgcgacagg ccgaaggcgg actcgatctt
     1321 gcccgcgcac acgccccatt cgtagggatg ctcctggccg ggaaaatttt gttctggcgc
     1381 cttgagcgcg gctaggatct tgcgccgcat cgggttggcg agggccttaa aggcctcgtc
     1441 atggttttgg ggtggggcgt cctgtatcgt cataatccga tatatagttc gaaggttgac
     1501 gatgtaaagg gggctcagtt tcccagcttt ttgctccgcc cggcgcgggt gatggtcacc
     1561 accccatcgc ccggctccac catgatgctg gggtcggggc gcgtcacggt ttcgccgcct
     1621 ttgcggttca cggccaccac gaatatggtg ccgtccgcct cgtgct
//
LOCUS       DASQCV010000529         1979 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2269780, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000529 DASQCV010000000
VERSION     DASQCV010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2269780"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(328..1572)
                     /locus_tag="VEQ16_08040"
     CDS             complement(328..1572)
                     /locus_tag="VEQ16_08040"
                     /inference="COORDINATES: protein motif:HMM:NF012798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HYP63822.1"
                     /translation="MTGLAIPRIYAETAPPVRAGAVSNHQHDEGMPMAGTIRKRTWST
                     RKGVTKTAWLADYFDQKRKRHTKQFPTKKAADAWLLRARGEVRDGIHTPDGASLTIAA
                     AGELWIRRCETDGLERATLLQYRVYLERHIVPTFGRMRLAQLTPPDVEAFRDELLRLL
                     SRPRALGVLSALKGILGEAQRRGHVVYNAAQATRIDIKKRERELLEVGRDIPSQNEVN
                     VILASAAERWRPVLVTAAFTGMRASELRGLPWDAVDFENRIIRVRQRADAWGTLGAPK
                     TAAGRREIPMARPVLKVLREWRLAYPFGTDGILFCSLNRTNPGGVLGHTELWKQFRQA
                     QLAAGVVDANGEPKYHFHALRHFFASAGIAAGFAPKRLQALLGHASITMTYDVYGHLF
                     PDPDDDHAKLAAIELAVSGARS"
     gene            complement(1578..>1979)
                     /locus_tag="VEQ16_08045"
     CDS             complement(1578..>1979)
                     /locus_tag="VEQ16_08045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63823.1"
                     /translation="FDLLLGTVSPQLAAPARRAGITILSSDADEPPRRVRPPGEGELL
                     PKKTSSGRGGWPKGKPRSRPTNGWVRPMAPAEPVERGTPSPNERERLNFPAEDGRARN
                     SGVPVRVMQAAIDDAKLAAGVADRLRGFLAR"
BASE COUNT          335 a          642 c          639 g          363 t
ORIGIN      
        1 gtcgcggctc tgcagcagga tctcgtcgcc gtcgcgaaac accagcgttc gaaagccgtc
       61 ccacttgggc tcgaactgcc atccctcgcc gccaggcaag gcgtcagcgg cgctcgacaa
      121 catcggggca agaggtggag cgaagggcag gcgcatggtt caacactcga ggaggtgtct
      181 aacatcttga cacgccccta actagccaag ggcttcgacc ttgatatctc ctgcccgggt
      241 tatctgtgag cgggaccgac ggttgtaatt tattttgttt gtttaaaacc aatagtttga
      301 cagccgtatg ctgcaatagt gctgcaatca gctccgggcg ccgctaaccg ccagctcaat
      361 tgccgccagc ttcgcgtgat catcgtccgg gtccgggaac agatggccat agacatcgta
      421 ggtcatcgtg atcgaggcgt ggccaagcaa cgcctgcagc cgctttggcg cgaacccggc
      481 ggcgatgccg gcgctggcga agaagtgacg cagcgcgtgg aaatggtatt tcggctcgcc
      541 attggcgtcg accacgccgg ctgcgagctg cgcctgccgg aactgtttcc acaactcagt
      601 atgccccaat acgccgccgg gattggtgcg gttgagcgag cagaacaaga tcccgtccgt
      661 gccgaacgga taggctaggc gccactcccg cagcaccttg agcacaggcc gtgccatcgg
      721 gatttcccgg cggccagcgg cggtcttggg ggcgcccagc gtcccccatg catcggcgcg
      781 ctggcgcacc cggatgatcc ggttctcgaa atcgacggca tcccagggga ggcctcgtaa
      841 ctcgctggcc cgcatcccgg tgaaggcggc ggttaccagc accgggcgcc agcgctccgc
      901 cgcgctggct aggatcacat tgacctcgtt ctgcgagggg atatcgcggc cgacttcaag
      961 cagctcgcgc tcgcgcttct taatgtcgat ccgggttgcc tgagccgcgt tgtagacgac
     1021 gtgcccgcgg cgctgcgcct cgccgagaat gcctttcagc gcgctcagca cgcccagcgc
     1081 gcggggccgg gacaatagcc gcagcagctc gtcgcgaaag gcctcgacat cgggcggggt
     1141 caactgggcc agccgcatcc tgccaaacgt gggcacgata tggcgctcca gatacacgcg
     1201 atactgcagc agtgttgccc gttcgaggcc gtccgtctcg cagcggcgga tccacaactc
     1261 gcccgccgca gcgattgtaa ggctggcgcc gtccggagtg tgaattccgt cgcggacctc
     1321 gccgcgggcg cgcagcagcc aggcatcggc cgccttcttt gtcgggaact gcttggtatg
     1381 gcgcttgcgc ttctggtcga aataatccgc cagccaggcg gtcttcgtga cgcccttgcg
     1441 cgttgaccag gtgcgtttac gtatggtgcc ggccattggc atgccttcat catgctggtg
     1501 gttagaaacg gcgccagccc tgaccggtgg cgccgtttcg gcataaatgc ggggaatggc
     1561 gaggccggtc aaggccatta gcgcgccaga aagccgcgta gccggtcagc aaccccagcc
     1621 gcgagcttcg cgtcgtcgat cgcggcctgc atcactctga ccgggacgcc gctgtttctg
     1681 gcgcggccgt cctctgccgg gaagttcaat ctttctcgtt cattcggcga aggtgtgccc
     1741 cgctcgaccg gctcggctgg cgccatgggt cggacccagc cattggtggg ccggctacgc
     1801 ggtttgcctt tcggccaccc gcctcgcccg gaagatgtct ttttgggcaa caactccccc
     1861 tcgccaggag gtcggacgcg gcgcggtggc tcatcggcat cggatgagag aatagtgatt
     1921 cccgcccgcc gcgccggcgc cgccagctgc gggctgacag tgccgaggag gaggtcaaa
//
LOCUS       DASQCV010000530         1745 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2104131, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000530 DASQCV010000000
VERSION     DASQCV010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2104131"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..811
                     /locus_tag="VEQ16_08050"
     CDS             <1..811
                     /locus_tag="VEQ16_08050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003618569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF932 domain-containing protein"
                     /protein_id="HYP63824.1"
                     /translation="LLNHRAELVKTLESDDGRVELRAVTGPDYGRIWDYELVAAVMRI
                     AGNGTGDTNWKVPGVLDWATMTHNPYVDVSKETTTLYASDRDVFLFLVDDTHPIEAGR
                     LPNGEPDLFFRGFYCWNSEVGSKTLGIASFYLRAVCANRCLWGVENFQEISIRHSKFA
                     TQRFAQEAAPALRRFANSSPAPFVAGIKAAREQIVARADDERESFLRKRGFSRGETAK
                     IIATVLEEEGHPPTSVFDFVQGITALARSRPHQDARLELEGKAKALLDRVG"
     gene            979..>1745
                     /locus_tag="VEQ16_08055"
     CDS             979..>1745
                     /locus_tag="VEQ16_08055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012561400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HYP63825.1"
                     /translation="MVKSVQKISLSASRDIPFDQLVLSQANVRRVKAGVSIEELAADI
                     ARRTLLQSITVRPVLDDKGAETGMFEIPAGGRRYRALELLVRQKRLAKTAPIPCVIRT
                     EGIAEEDSLAENVQRAPLHPLDQFRAFQALREKGQGEEEIAAVFLVPVSVVKQRLRLA
                     SVSPRLLDVYAEDEMSLEQLMAFSVSPDHERQESVWEAVQRSYNKEPYQIRRLLTEGA
                     VRASDKRAQYAGAEYVAAGGAVMRDLFQQDDGGWLQDP"
BASE COUNT          303 a          476 c          635 g          331 t
ORIGIN      
        1 gctgctgaac caccgcgccg agttggtgaa gacgctggag agtgatgacg ggcgagtgga
       61 actgcgcgcg gtgaccgggc cggattatgg gcgcatctgg gattatgagc tggtggcggc
      121 ggtgatgcgc atcgcgggta acggcaccgg cgacacgaat tggaaggtgc cgggcgtgct
      181 ggattgggcc accatgaccc ataaccccta cgtggatgtc tcgaaggaaa ccaccacgct
      241 ctatgccagc gaccgggacg tgtttttgtt cctggtcgat gacacgcacc cgatcgaggc
      301 ggggcggttg cccaacggtg agccggacct gttcttcagg gggttctatt gctggaattc
      361 cgaggtcggc tcgaaaacac ttggcattgc ctcgttctat ttgcgcgccg tatgcgccaa
      421 ccgctgtctc tggggcgtgg aaaatttcca ggagatcagc atccgccaca gcaaattcgc
      481 cacccagcgc tttgcccagg aggctgctcc ggcgttgcgg cggttcgcca attcctctcc
      541 cgcgccgttc gtggcaggga ttaaggcggc gcgggagcag attgtcgccc gggcggatga
      601 cgagcgtgag agcttcctgc gcaagcgcgg tttcagcaga ggcgagacag cgaagatcat
      661 cgccactgtg ctggaggaag aaggccatcc acccacgagc gtgtttgatt tcgtgcaggg
      721 gatcaccgcc ctggcgcgtt cgcgcccgca tcaggatgcc aggctggagc tggagggcaa
      781 ggcgaaggcg ttgctcgacc gggtggggtg agccgggttt ggcgtgtcgt gggttgagta
      841 tgtgtcagcc gtgggccgag gatcggtcca cggcttttct tataggccgg attttagagg
      901 cagagggcgg ctgggcgctt ggtgacgggt gataggcacg gagagtggct cggtgctgcc
      961 cgtcatggag tttgtcccat ggtcaagagc gttcagaaaa ttagcctcag tgcttcgcgc
     1021 gatattccgt tcgaccagct ggtgttgtct caagccaatg tcaggcgggt gaaggcgggc
     1081 gtctcgattg aggagttggc ggcggatatc gccaggcgca cgctgctgca gagcatcacg
     1141 gtgcggccgg tgctcgatga caaaggcgcc gagaccggca tgttcgaaat ccccgccggc
     1201 gggcggcgct atcgggcgct ggaactactg gtgcggcaaa agcgcctggc caagaccgcg
     1261 cccatcccgt gcgtcatccg gaccgagggc atcgccgagg aggacagttt ggcggagaat
     1321 gtgcagcgcg cgccgctgca tccgctggat cagttccggg cgtttcaggc gctgcgcgag
     1381 aaaggccagg gcgaggagga aatcgccgcg gtgttcttag tgccggtttc ggtggtgaag
     1441 cagcgcctgc ggctggcttc tgtctcgccc cggctgctcg acgtttatgc cgaggatgag
     1501 atgagcctcg agcagctgat ggcgttctcg gtcagccccg accatgagcg ccaggagagc
     1561 gtgtgggagg ctgtgcagcg ctcgtataac aaagagccct atcagatccg ccggttgctg
     1621 accgaagggg cggtgcgcgc ctccgacaag cgcgcgcaat atgccggggc ggaatatgtg
     1681 gcggcgggcg gggcggtcat gcgcgatctg ttccagcagg atgatggcgg ctggctgcag
     1741 gatcc
//
LOCUS       DASQCV010000531         8044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3099276, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000531 DASQCV010000000
VERSION     DASQCV010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 8044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8044
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3099276"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..542
                     /locus_tag="VEQ16_08060"
     CDS             <1..542
                     /locus_tag="VEQ16_08060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HYP63826.1"
                     /translation="GPAFTVPNVEAADLKNYRVLHFATHGLLPTDLPCQAEPAIVTST
                     PPSAGSADQSLLTTSAVQDLHLDADLVLLSACNTGGGAAGGEALSGLARSFFYAGARA
                     LMVTQWSVNDQVSAYLVADTLSRLHSGSDGGAAGSLRAAQLALIGGAGKGFPDQIANP
                     FFWAAFDVIGDGGTAQSGL"
     gene            549..2366
                     /locus_tag="VEQ16_08065"
     CDS             549..2366
                     /locus_tag="VEQ16_08065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYP63827.1"
                     /translation="MTEMLGKYELRHVLGKGAMGTVYEGFDPIIARRVAIKTVRLPEP
                     DDEEAQEELARFKREAQAAGRLSHPNIVGVFDYGETPEIAYIVMEFVDGTTLKHVLDK
                     GERFEQAEIVRIMDGLMAGLQFSHERGVVHRDIKPANVMMTKAGEVKIADFGIARIES
                     SSMTQAGTMLGTPSYMSPEQFMGQTVDARTDLYSSGVMLYQLLTGEKPFEGGLTAIMH
                     KVLNTEPLPPSALSVTVTPAFDAVVAKAMAKRPDDRFASASEFAAALRDAQAGKSENT
                     GRFSLGADDFSGGDATMVAPRRPATAAPASAPAAPAPAPAPAAAKKGPNMLVLGGGVV
                     AVLALLGGGAFMLLGGHHGTPATPAASAASAVPTPPPPPPPLTPAAREAAFTNTLGAL
                     PCTLLAADDSGAQPVLSGIAGAGAPQAALNAALQSLPNPSQLTNNIQTIDGPYCNALD
                     AVRPYRPLFNDPSSQLALSLAGGSTTLHDGDLITVNQTIPFSGYLQTDYFSSDGTVLH
                     LYPTPTDPLKPLAAQGTKVLGDPAHGGASWQVSAPYGTDLIISIASSQPLFSAARPQD
                     ENDSDYLPALRAALQNAASAGAKISIAATPVTTLPKAAQ"
     gene            complement(2519..3568)
                     /locus_tag="VEQ16_08070"
     CDS             complement(2519..3568)
                     /locus_tag="VEQ16_08070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63828.1"
                     /translation="MHRPITDEDDTVKVKQRASAPLPRRSLLLPLAAGGTAILAAAFG
                     GALLARRWLAPSSAAAPDFAIDTETEAGIDATVPCNIKLSYFALDRNVVVIDFADLLT
                     QGLTLNRIAAFVEKAGAPRNRVLDDADLAAAIAATGDTAESYYYGHDYQASDLARFFA
                     LAGAENIALNQHELWLKDLLTQLGWLTPGAVGAIITVPAAGGPIAPDMRAVILHHEIS
                     HGAFYTVPEYRAYTESFWYSLTDADRAAFTDFLGRQGYDTSDTELMLNETQAYLVFTH
                     DPRFFNAAAVGMTEGFVTQLREGFIAGMPDFWLKPMADATLPPAAAVGAACTAAIFPK
                     TCLCYVQQPTQRRIS"
     gene            complement(3596..4177)
                     /locus_tag="VEQ16_08075"
     CDS             complement(3596..4177)
                     /locus_tag="VEQ16_08075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HYP63829.1"
                     /translation="MRKVLLAATASLSLFAAVAAHAQSNPSAQQLINQLKPSGTVSDT
                     TRGIKPLAPSSSEGTATEAPAATPAVVSSAPSAAPSANLEVDFASGSANLTPRAEATL
                     DQLGKALTSTQLASYNFKIVGHTDTVGDAGTNQTLSEQRAQAVKSYLQSKFGVADTRL
                     QAQGVGESDLAVETPANTPNARNRRVEVINLGQ"
     gene            complement(4258..5307)
                     /gene="tssG"
                     /locus_tag="VEQ16_08080"
     CDS             complement(4258..5307)
                     /gene="tssG"
                     /locus_tag="VEQ16_08080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HYP63830.1"
                     /translation="MGRKAQSPLEALDKAPERFRFDAAFRLLQATARKQDAEDPVRFS
                     SPASLAQPMAEVSSIAPPQETLPAQLTTPMLGLIGPSGVMPRWYTELVAQSIRARARG
                     IADFLDMLAQRLVLAFARAGEKYRLHRSSEAAARAGVKEPIGEAVLALTGYGLGNMPA
                     RLAAGPDALRYYAGYMSAYPRAAARLASMVSDYLGRQVEVIEFAGAWSSISPDQRTRL
                     PRGRIPGVYNALSRDAAIGIRVWDQQARFILRVGPLTRAEFEALLPDQPLLAALVSLV
                     RAYAGWEHDFAVNLLLAAPEIPPLRLAAPGVEDAPRLGWTSWLPATTARLTGRTLADD
                     ALFAATLVEHFGRGP"
     gene            complement(5315..7141)
                     /gene="tssF"
                     /locus_tag="VEQ16_08085"
     CDS             complement(5315..7141)
                     /gene="tssF"
                     /locus_tag="VEQ16_08085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HYP63831.1"
                     /translation="MAESLLPYFNRELVAIRRLAAEFAQANPKIAGRLRLSPDAVDDP
                     HVARLLDGVAFLSARAQARLDDEFPELTDTLLSVLYPHFQAPFPSCAIAQFTPKPDTQ
                     AMLQIPAGYLMDTEPVRGQSCRFRTAEPLTLWPVRIEAARLMGMPFTAPVNPLANGAN
                     AVLRLTISTLNPEMKFSSLNGFDKLRFFLRGSPATVMPLFETLAGHTLAVALADSPND
                     PNPVLLPGTALSQCGFEPEDALLPWPARSFSGFRLLSEYFAFPQKFMFLELSGLEAKT
                     LLHSNGKLEIFLYLGRGSTELERSVSAENFALGCTPIVNLFPQRCEPINLDHTTTEYR
                     VMPDARRSGVMEVWGLTNVSEVTQDASTRPWAPFYRLAAGRQDTAPTGGLYNELRRAA
                     PEPLGGSDTFIAPFMENFDPGQKASTVLSVNALCLNRDLPAELPFGGGHPRLTALSPQ
                     AGVAAMACITPPTPTLRPEQRTAGSWRLISHLALGHLSVTGGAEGAETLKEMLRLYDL
                     RDTAETRAALEALLAVSAAPGTARVPGGRLGAFCRGLDIELEFEPRAFQSAGLFLLAS
                     VLERFLALHASINSFVRSTVRLRGRPDPEVRFPARAGARVLL"
     gene            complement(7134..7673)
                     /gene="tssE"
                     /locus_tag="VEQ16_08090"
     CDS             complement(7134..7673)
                     /gene="tssE"
                     /locus_tag="VEQ16_08090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0033103 - protein secretion by the type VI
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssE"
                     /protein_id="HYP63832.1"
                     /translation="MSESTLSHGQSSYLERARDAGARVKLSVLDRLLDDAPEMERDRP
                     LSAGDALAVLRRAVRRDLEALLNARRRFFSIPRHFTELANSSFAFGLPDYSSGAMADA
                     SQREVLRREIERCIKLYEPRLAQVSVQLVKRKDDLDTTLQLRIEAMLHADPAPEPISF
                     DTLVNATTSEIEVSGGAIG"
     gene            complement(7670..>8044)
                     /locus_tag="VEQ16_08095"
     CDS             complement(7670..>8044)
                     /locus_tag="VEQ16_08095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019012620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system accessory protein TagJ"
                     /protein_id="HYP63833.1"
                     /translation="DQVFDDFRDGSDLHPGFIEVLTSTGKYYWVPVSRIESMIFHPPK
                     RPRDLIWRRCSMSVTEGPDGDVYIPAIYYADAEETNEAHRLGRETSWTEAAPIRGFGQ
                     RLFLVGEDAAGIMELDELEFGS"
BASE COUNT         1371 a         2507 c         2879 g         1287 t
ORIGIN      
        1 tcggcccggc cttcaccgtg ccgaatgtgg aagcagcgga tttgaagaat taccgcgtgc
       61 tgcatttcgc cacgcacggc ctgctgccga ccgacctgcc ctgccaggcg gaaccggcca
      121 tcgtcacctc caccccgccc agcgcgggct cggcagacca gtcgctgctg accaccagcg
      181 cggtgcagga tttgcatctc gatgccgacc tcgttctgct ctcggcctgt aacaccggcg
      241 gcggggcggc aggcggcgag gcgctctccg gcctcgcgcg cagcttcttc tatgccgggg
      301 cgcgcgcgct gatggtgacg caatggtcgg tgaacgacca ggtctcggcc tatctggtgg
      361 cggatacgct gagccgcctg cattcaggca gcgatggcgg ggcggcgggc agtttgcggg
      421 cggcgcagct ggcgctcatc ggcggggccg gaaaagggtt tccggaccag atcgcgaacc
      481 cgttcttttg ggcggctttc gacgtcatcg gcgatggcgg gacagcgcag agcggactat
      541 aagacctcat gaccgaaatg ttgggaaaat acgagttgcg ccacgtgctc ggcaaggggg
      601 cgatgggcac ggtatatgaa gggttcgacc cgatcattgc gcggcgcgtg gcgatcaaga
      661 ccgtgcgcct gcccgagccc gatgacgagg aggcgcagga ggagctagcg cgcttcaagc
      721 gcgaggcgca ggcggcgggg cggctctcgc atcccaacat tgtcggcgtg ttcgattatg
      781 gcgagacccc cgagatcgcc tatattgtca tggaattcgt cgacggcacg acgctgaaac
      841 atgtgctcga caagggcgag cgcttcgagc aggccgagat cgtgcgcatc atggacgggc
      901 tgatggccgg gctgcaattc agccatgagc gcggcgtcgt gcatcgcgac atcaagcccg
      961 ccaatgtgat gatgacgaag gcgggcgagg tgaagatcgc cgatttcggc atcgcccgca
     1021 tcgagagcag ctcgatgacc caggccggaa cgatgctggg cacgccgtct tatatgtccc
     1081 ctgaacaatt catggggcag acggtggacg cgcgcaccga cctctattcc tccggcgtga
     1141 tgctgtacca gctgctgacc ggagagaagc cgttcgaggg cgggctgacg gcgatcatgc
     1201 acaaggtgct caataccgaa ccgctgccgc cttccgcttt gtccgttacg gtgacaccgg
     1261 ccttcgatgc ggtggtggcg aaggcgatgg cgaagcggcc ggatgaccgt ttcgcgtccg
     1321 cgagcgagtt tgccgcggcg ctgcgcgatg cacaggcggg caagtcggag aataccgggc
     1381 gcttcagcct gggcgctgat gatttcagcg gcggcgatgc caccatggtg gcaccgcgcc
     1441 gcccggctac agccgcgccc gcttccgcgc ccgccgcacc tgcccccgcc ccggcgcccg
     1501 ccgcggcgaa gaagggaccg aacatgctgg tgctgggcgg cggcgtcgtg gcggtgctgg
     1561 ccctgctcgg cggcggcgcc ttcatgctgc tcggcggcca tcatggcacg cctgccacgc
     1621 cagcggcgtc ggcggcttcc gccgtgccga ccccgccccc accgccgccg ccgctcaccc
     1681 ccgccgcgcg cgaggccgcc ttcaccaaca cgctcggcgc tttgccctgc acgttgctgg
     1741 cggcggatga ttccggcgcg cagcctgtgc tgtccggcat tgccggggct ggggcgccgc
     1801 aggcggcgct gaatgcggcg ctgcaatctt tgcccaatcc gtcgcagctc accaataata
     1861 tccagacgat cgacggcccg tattgcaatg cgctggatgc ggtgcggccg taccggccgc
     1921 tgttcaacga tccgtcctcg cagcttgcgc tctcgctggc cggcggcagc accacgctgc
     1981 atgatggcga tctgatcacg gtgaaccaga cgatcccgtt cagcggttat ctgcagacgg
     2041 attatttctc ctccgacggc acggtgctgc atctctaccc gacgccgacc gacccgctga
     2101 agcccttggc tgcacagggg acgaaagtgc tgggcgaccc ggcgcatggc ggggcgagct
     2161 ggcaggtgag cgcgccttat ggcaccgacc tgatcatttc cattgcctcg tcgcagcctt
     2221 tgttcagcgc ggcgcggccg caggatgaga atgacagcga ctatctgccg gcgttgcgcg
     2281 cggcgctgca gaatgcggcc tcggccggcg cgaaaatctc catcgccgcc acgcctgtca
     2341 cgaccctgcc taaggccgcg caatgacgtt gtgaccccat ggggcttccc atggagtcac
     2401 aagtttcatc ccaatttata aaagtttttt gcgccgcttt gcgtcccgat gacgaagcgg
     2461 caaagccgca tagtctgaat cgggacgcca gaggatcttc aaaaaagcgg cctcttcctt
     2521 acgaaatccg ccgctgcgtt ggctgttgca cgtagcaaag gcaagtcttc ggaaaaatcg
     2581 ccgccgtaca ggccgcgccc accgcagctg caggcggcaa ggttgcatcg gccatcggct
     2641 tcagccagaa atccggcatg cccgcgataa acccctcacg caattgcgtg acgaaccctt
     2701 ccgtcatgcc cacggcagcg gcgttgaaga agcgcgggtc gtgggtgaag acgagataag
     2761 cctgggtctc gttgagcatc agctcggtgt cgctggtgtc gtagccctga cggccgagga
     2821 aatcggtgaa agcggcgcgg tcggcgtcgg tgaggctgta ccagaaggat tccgtatagg
     2881 cccggtattc aggcacggtg tagaaggcgc cgtgcgagat ctcgtgatgc aggatgacgg
     2941 cgcgcatgtc cggggcaatg ggcccgcccg ccgccggcac ggtgatgatg gcccctaccg
     3001 cgccgggcgt aagccagccg agctgggtga gcaggtcctt cagccataat tcatgctggt
     3061 tgagggcgat gttttccgcc ccggcgaggg cgaagaagcg cgccaggtcg gatgcctggt
     3121 aatcgtggcc gtaataatag ctttccgccg tgtcgccggt ggcggcgatg gcggcggcaa
     3181 ggtcggcatc gtccagcacg cggttgcgcg gcgcgccggc cttttccacg aaggcggcga
     3241 tgcggttgag cgtgaggccc tgggtgagca agtcggcgaa atcgatgacg acgacattcc
     3301 tatcgagcgc gaaataggaa agcttgatgt tgcacggcac cgtcgcgtcg atgccggcct
     3361 cggtttccgt gtcgatggcg aagtccggcg cagcggcgct ggacggggcc agccagcgcc
     3421 gggcgagcag cgcgccgccg aacgccgccg ccaggatggc agtacctccg gcggcgagcg
     3481 gcagaagaag cgaacggcgc ggcagcggcg ccgaagcgcg ctgcttgacc tttaccgtat
     3541 cgtcttcatc cgtgatgggg cggtgcatcg ccctgtcctg cttactctgt cctacttact
     3601 ggccgagatt gatcacctcg acgcggcggt tgcgcgcatt cggcgtgtta gccggggtct
     3661 ccacagccag atcggattca cccacgccct gcgcctgcag gcgggtgtcc gccacgccga
     3721 atttgctctg caggtaggat ttcaccgcct gggcgcgctg ctcggagaga gtctggttgg
     3781 tgccggcatc gcccacggtg tcggtatggc cgacgatctt gaagttgtag ctggcgagct
     3841 gggtgctggt gagagccttg ccgagctggt cgagcgtcgc ttccgcgcgc ggggtgaggt
     3901 tggcggagcc ggaggcgaaa tcaacttcca ggttggcgga cggggcggcg gacggagcgc
     3961 tgctgacgac ggccggggtg gcggccgggg cctcggtggc ggtgccttcg ctgctggacg
     4021 gggcgagcgg cttgatgccg cgggtggtgt cgctcaccgt gccgctcggc ttcagctggt
     4081 tgatgagctg ctgggcagac gggttgctct gggcgtgggc cgcaactgcc gcgaacaaag
     4141 aaagcgaagc ggtagccgcg agaagaactt tgcgcatgaa aacctccgtg tcgttacgcc
     4201 actgtttaga aacgccagcc gggcggcgcg gtgccggttg cgttaaatct gccgtcacta
     4261 tggacctcga ccgaaatgtt ccacaagcgt ggcggcgaag agagcgtcgt ccgcgagggt
     4321 gcggccagtg agacgggcgg tggtggcggg cagccagctc gtccagccca ggcgcggggc
     4381 gtcttccacc cccggcgccg ccaaacgcag cggcggaatt tcgggcgcgg cgagcagaag
     4441 attgaccgcg aaatcatgct cccagccggc ataggcacgc acgagcgaga ccagggcggc
     4501 gagcaaaggc tgatccggca gcaatgcctc gaattcggcg cgggtgagcg ggccgacgcg
     4561 caggatgaaa cgcgcctgct ggtcccatac gcggatgccg atggcggcat cgcgcgacaa
     4621 ggcattatac acgccgggga tgcgcccgcg gggcaagcgg gtgcgctggt ccggggagat
     4681 ggaagaccag gcgccggcga actcgatcac ctcgacctga cggccgagat aatcggacac
     4741 catgctggcg agccgcgccg ccgcgcgcgg ataggccgac atgtagccgg cataatagcg
     4801 cagcgcgtcc ggcccggcgg cgaggcgggc gggcatgttg ccgaggccgt agccggtgag
     4861 cgccagcacg gcctcgccga tgggctcctt cacgccggcg cgtgccgccg cttccgagga
     4921 gcggtgcagc cggtattttt ctccggcgcg ggcgaaggcc agcaccaaac gttgcgccag
     4981 catgtcgagg aaatcggcga tgccgcgggc gcgggcgcgt atggattgcg ccaccagctc
     5041 ggtgtaccag cgcggcatga cgccggacgg gccgatgagg ccgagcatcg gcgtggtgag
     5101 ctgggcgggt aatgtttcct gcggcggggc gatgctgctc acctccgcca tcggctgcgc
     5161 cagcgaggcg ggtgaggaga agcgcaccgg gtcctcggca tcctgcttgc gggcggtggc
     5221 ctgcagcaag cggaaggcgg cgtcgaagcg gaaacgctcc ggcgccttgt ccaaagcctc
     5281 aagcggggat tgcgccttcc tgcccatggc ggccctacaa cagcacgcgc gcgccggcgc
     5341 gggcggggaa gcggacttcc gggtcaggcc gaccgcgcag ccgcacggtg ctgcgcacga
     5401 agctgttgat gctggcatgc aaagcgagga aacgttccag caccgaggcg agcaggaaca
     5461 gcccggcgct ctggaaggcg cggggctcaa attcaagctc gatatcgagc ccgcggcaga
     5521 aggcgccgag ccgcccaccc ggcacgcgcg ccgtgccggg cgcggcggag acggcgagca
     5581 aggcttccag ggcggcgcgg gtctcggcgg tgtcgcgcag gtcgtacagg cgcagcatct
     5641 ccttcagcgt ctccgcacct tcggcaccgc cggtgacgga gagatggccg agggcgagat
     5701 gcgagatgag gcgccaggag cccgccgtgc gctgctcggg ccgcagcgtg ggggtgggcg
     5761 gggtgatgca ggccatggcg gcgacaccgg cctgcgggct gagtgccgta aggcgcggat
     5821 ggccgccgcc gaagggcagc tcggccggca gatcgcggtt aaggcacagc gcgttgacgg
     5881 acagcaccgt gctcgccttc tgcccgggat cgaaattttc catgaatggg gcgatgaacg
     5941 tgtccgaccc gccgagcggc tcgggtgcgg cgcggcgcag ctcgttatag agcccgcccg
     6001 tgggggctgt atcctggcgc ccggcggcga ggcggtaaaa gggcgcccag gggcgggtgg
     6061 aggcgtcctg ggtcacctcg ctgacattgg tcaggcccca gacctccatc acgcccgagc
     6121 ggcgcgcatc cggcatcacc cggtattcgg tggtggtgtg gtcgagattg atcggctcgc
     6181 agcgctgcgg gaagagattg acgatgggcg tgcagccgag cgcgaaattc tccgccgaga
     6241 ccgagcgctc caactccgtg gagccacgcc cgagatagag gaagatttcc agcttgccgt
     6301 tgctgtgcag cagggttttg gcctcgaggc cggaaagttc gaggaacatg aatttctgcg
     6361 ggaaggcgaa atattcgctg agcaggcgga agccggaaaa actgcgcgcg ggccagggca
     6421 gcaaagcgtc ctcgggctca aacccgcatt gggaaagcgc cgtgccgggc agcagcacgg
     6481 ggttggggtc gttggggcta tcggccaaag ccacggccag cgtatggccg gccagggtct
     6541 cgaacagagg catcaccgtc gccgggctgc cgcgcaggaa gaagcgcaat ttgtcgaacc
     6601 cgttgaggga cgaaaatttc atctccggat tgagcgtgga gatggtgagg cgcagcaccg
     6661 cgttggcgcc attggcgagc gggttgaccg gggcggtgaa gggcatgccc atgaggcgcg
     6721 cggcctcgat gcgcacgggc cagagggtga gcggctcggc ggtgcggaag cggcaggact
     6781 ggccgcgcac gggctcggtg tccatgagat aaccagccgg gatctgcagc atcgcctggg
     6841 tgtccggctt gggcgtgaac tgggcgatgg cgcaggaggg aaagggcgcc tggaaatgcg
     6901 gatagagcac gctgagcagc gtgtcggtca gctcgggaaa ctcgtcatcg agccgcgcct
     6961 gggcgcgggc ggagaggaag gcgacgccat cgagcagccg cgccacatgc gggtcgtcca
     7021 ccgcatccgg gctcaggcgc aggcgcccgg cgatcttcgg gttggcctgg gcgaattcgg
     7081 cggcgagacg ccttatggcg accagctcgc ggttgaaata gggcagcagc gactcagcca
     7141 attgcacctc cgctcacttc gatctcggac gtggtggcat tgaccagcgt gtcgaaactg
     7201 atcggctccg gggccgggtc ggcatgcagc atggcctcga tgcgcaattg cagcgtggta
     7261 tccagatcgt ccttgcgctt caccagctgc accgagacct gcgccaggcg cggctcgtag
     7321 agcttgatgc agcgctcgat ctcacgccgc agcacctcgc gctggctggc atcggccatg
     7381 gcgccggagc tgtaatccgg caggccgaag gcgaagctgg aatttgccag ctccgtgaaa
     7441 tggcgcggga tggagaagaa gcggcggcgc gcattcagca gcgcctccaa atcccgccgc
     7501 acggcgcggc gcaatacggc gagcgcgtcg cctgccgaca gcgggcggtc gcgctccatc
     7561 tccggcgcat cgtccagcag ccggtccagc acggagagtt ttacgcgcgc gcccgcgtcg
     7621 cgggcgcgtt caagatagga actctggccg tgcgagaggg tggattcact catgaaccga
     7681 actcaagctc gtccagctcc atgatgccgg ccgcgtcctc gcccaccagg aacagacgct
     7741 ggccgaagcc acggatgggc gctgcctcgg tccaggatgt ttcgcggccc aaacggtggg
     7801 cctcgttggt ctcctccgcg tcggcgtaat agatggcggg gatatacaca tcgccatccg
     7861 ggccttccgt cacgctcatc gagcagcggc gccagataag gtcgcgcggg cgcttgggcg
     7921 ggtggaagat catggattcg atgcgcgaca ccggcaccca gtaatatttg ccggtgctgg
     7981 tcagcacctc gatgaagccg ggatgcaaat cgctgccatc gcggaaatcg tcgaacacct
     8041 ggtc
//
LOCUS       DASQCV010000532         3995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3264006, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000532 DASQCV010000000
VERSION     DASQCV010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3995
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3264006"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1472)
                     /locus_tag="VEQ16_08100"
     CDS             complement(<1..1472)
                     /locus_tag="VEQ16_08100"
                     /inference="COORDINATES: protein motif:HMM:NF012880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HYP63834.1"
                     /translation="MQDVQTNLAIDPAVLTNIYRQMARIRATDKAIQAGLSSGRFFFT
                     YWPMTGQEAIPAIISQLVTPRDYMVTTYRGIHDQVAKGVNLFKLFAEAMGRIDGVNKG
                     KGGAPHISDPGSGSMLTTAIVGAGAPIANGLAIAAQARGEDRVTIVNFGDGATSIGAV
                     HEAMNLAGVWKLPVIFLCQNNQIAEYTFIPDYTASPDFAGRAAGYGFKGVKLDSRDPI
                     AFYNGMKQVIADIRAGKGPIFVEAITQRFGPHAGIGDSKDISKEALAQAKAEWPVTRT
                     RNLLLETGTLTEAQLTEIDDAATAEVEDAIVRALACKITPVEETLIDVYADPTVPPQR
                     GVYPVRAEETAPTGETKTMLMAEAVGDAQRIALLKDPGVFLLGEDIGDPPGGVFMTSR
                     GLEKEFGKKRVRPTPIAEQAIIGAGTGAAIAGMRPIAEIMFNDFAGVCMDQIFNHAAK
                     QRYMSGAATHVPLTIRMIVGGGLGGTGAQHSQSLEAWLLHT"
     gene            complement(1728..2315)
                     /locus_tag="VEQ16_08105"
     CDS             complement(1728..2315)
                     /locus_tag="VEQ16_08105"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HYP63835.1"
                     /translation="MKNIAALLLAAGLSRRMGAQKLLLDIEGQPMVRRVAATCQQAGL
                     SPIIAVLGYEADRVEQALAGLPVHCIRNENFSTGMASSLKLGLTALPADSDGALIVLA
                     DMPFVTAEDMRAPCAAFAPEQGRAICIPTYKGKRGNPVLLGRQCFAALAALTGDQGAK
                     PFIQKNEDLVVEIPAGPGVLRDIDTPEAYALYGDV"
     gene            complement(2312..3415)
                     /locus_tag="VEQ16_08110"
     CDS             complement(2312..3415)
                     /locus_tag="VEQ16_08110"
                     /inference="COORDINATES: protein motif:HMM:NF024869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
                     /protein_id="HYP63836.1"
                     /translation="MRDGSINPARLRMSEAQRFEDAASSPAALALQGAGEVDLLRQAA
                     RWQEAGKNVAIATTIACWGSAPRRVGSRLAVTSDGQFAGSVSGGCVENAVITAARACL
                     EDGAPRQLDYLGDPEMPWEVGLPCGGSISVYVEPCSEKFSAALRSLDAGHITAIATNL
                     ETGAAAWLSATEAGGDAETASTVQAVLPDEPRQWRPGMLSEPASAPLFVDVLRPAPRL
                     VIIGATHLAQSLVAMAGIYGYEVILIDPREAYFAEARFGAIKQLVASPGPAVAALAPD
                     ANTAIIVVSHDPKIDDPALIEALRSEAFYIGALGSRKSQAARLDRLRAAGFAEEALDR
                     IHGPVGLSIGAITPSEIAGSILAQMTQILRATL"
     gene            3567..>3995
                     /locus_tag="VEQ16_08115"
     CDS             3567..>3995
                     /locus_tag="VEQ16_08115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019016440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon monoxide dehydrogenase subunit G"
                     /protein_id="HYP63837.1"
                     /translation="MKMTGEQNIAASRQKVWEALNDQEVLRQSIPGCQSLEKDADGRL
                     NAVVAVKIGPIGARFAGAVTLSELDPPNGYKITGEGQGGMAGSAKGGAKVRLADAPGG
                     TLLSYEVEAEVGGRLAQLGGPMIDATAKQLAGKFFEQFGAV"
BASE COUNT          689 a         1149 c         1440 g          717 t
ORIGIN      
        1 gtgtgcagga gccaggcttc cagtgattgc gaatgctgcg cgccggtgcc gcccaggcca
       61 ccaccgacaa tcatgcggat ggtgaggggc acgtgggtgg ctgcgccgga catgtagcgc
      121 tgcttggcgg catggttgaa aatctggtcc atgcagacgc cggcgaaatc attgaacatg
      181 atttcggcga tggggcgcat gccggcgatg gcggcacccg tgccggcgcc gatgatggcc
      241 tgctcggcga tgggggtggg gcggacgcgc ttcttgccaa actccttctc taggccgcgc
      301 gaggtcatga acacgccgcc cggcgggtcg ccgatatcct cgccgagcag gaacacaccg
      361 gggtccttca gcagggcgat gcgttgggcg tcgcccacgg cttcggccat gagcatggtc
      421 ttggtctcgc ctgtgggagc ggtctcttcg gcgcggaccg gatagacgcc gcgctggggc
      481 gggacggtgg ggtcggcata gacgtcgatg agggtttcct cgaccggcgt gatcttgcag
      541 gcgagggcgc ggacgatggc gtcttccacc tcggcggtgg cagcatcgtc gatttccgtg
      601 agctgcgctt cagtgagggt gccggtttcg agcagcaggt tgcgggtgcg ggtgacgggc
      661 cattccgcct tggcctgggc cagggcttcc ttggaaatgt ccttggaatc accgatgccg
      721 gcatgaggac caaaacgctg ggtgatggcc tccacgaaga tgggcccctt gccggcgcgg
      781 atatcggcga tgacctgctt catgccatta tagaaggcga tggggtcgcg gctatccagc
      841 ttgacgccct tgaagccgta gccggcggca cggccggcga aatcggggct cgccgtgtag
      901 tccgggataa aggtgtattc ggcgatctgg ttgttctggc acaggaagat gacgggcagc
      961 ttccatacgc cggcgaggtt catcgcctcg tgcacggcgc cgatggaggt ggcgccatcg
     1021 ccaaaattga cgatggtgac acggtcttcg ccgcgcgcct gggcggcgat ggcgaggccg
     1081 ttggcgatgg gggcgccggc gccgacgatg gcggtggtga gcatggagcc ggagcctggg
     1141 tcggagatgt gcggcgcgcc gcccttgcct ttgttcacgc cgtcgatgcg gcccatcgcc
     1201 tcagcgaaga gcttgaacag gttcacgccc ttggcaacct ggtcgtgaat gccgcgatag
     1261 gtggtgacca tgtagtcgcg cggcgtgacg agctgggaga tgatggcggg gatggcttcc
     1321 tgaccggtca tcggccaata ggtgaagaag aaacggccgc tggagaggcc ggcctggatg
     1381 gctttatcgg tcgccctgat gcgcgccatc tgccggtaga tattggttag aacggccggg
     1441 tcgatcgcga gatttgtctg gacgtcttgc atcttaaagc cctcacctga aattctcgaa
     1501 tgattatggt ctgtagcgga ttttaatgca tcggccagga gagactgacc gataatttgt
     1561 cccagcgtga ttactgagtt tgctgcattt cgcaaatcgc cgatgcgatg tttgaaggat
     1621 ggggggcagg gtgcgcccgg cgggccagtg tcgcaattga cgctggcgct atcaaggacg
     1681 ccggctcccc ggaaagcaac gctcgatggc ccgggcggga aagcgtctca aacatcgcca
     1741 taaagggcgt aggcttccgg cgtgtcgata tcgcgcaaca caccggggcc tgcgggaatt
     1801 tccacgacca gatcttcgtt tttttgaata aagggcttgg cgccctggtc gcccgtcagc
     1861 gccgccagag cggcaaaaca ttggcgcccg agcagcacgg ggttgccgcg ttttcctttg
     1921 taagtgggaa tgcagatggc gcggccttgc tccggcgcaa aagcggcaca gggggcgcgc
     1981 atgtcttccg ctgtcacgaa cggcatgtcg gcgaggacga tcagtgcgcc atcactatcg
     2041 gctggtagag cggtgaggcc cagcttaagg gagctggcca tgccggtgct gaaattttcg
     2101 ttgcgtatgc agtgcacggg caagccggcg agcgcctgtt ccacgcggtc cgcctcataa
     2161 cccagcacgg cgatgatggg tgacagtccg gcctgctggc atgtggcggc gacgcggcgg
     2221 accatgggtt ggccctcgat atccaacagc aatttttgcg cgcccatgcg ccgcgacagt
     2281 cccgccgcga gcagcagcgc ggcgatattt ttcacagcgt ggcgcgcaga atctgcgtca
     2341 tttgcgcgag gatggacccg gcgatttccg acggcgtgat ggcgccgatg gacagcccca
     2401 ccgggccatg gatgcggtcc agcgcctctt cggcgaagcc cgccgcgcgc agccggtcca
     2461 gccgcgcggc ttggcttttg cgcgagccaa gcgcgccgat atagaacgcc tccgagcgca
     2521 acgcctcgat caaggcgggg tcgtcgattt tcggatcatg cgagacgacg atgatggcgg
     2581 tgttggcatc aggcgccagc gccgcgacgg cggggccggg ggaagcgacg agctgtttga
     2641 tggcgccgaa gcgggcctcg gcgaaatagg cctcgcgcgg gtcaatgagg atgacctcat
     2701 agccatagat gccggccatg gcgacgaggg attgcgccag atgcgtggcg ccgatgatga
     2761 caaggcgcgg cgccgggcgc agcacatcga caaacaaggg cgcactggcc ggctcggaca
     2821 gcatgcctgg acgccattgc ctgggctcat ctggcaacac ggcttgcact gtactggctg
     2881 tttccgcatc gccgcccgcc tccgtggcgc tgagccaggc ggcggcgccg gtttcgagat
     2941 tcgtggcgat ggcggtgata tggcccgcat cgaggctgcg cagggcggct gaaaattttt
     3001 cgctgcaagg ctcgacatag acgctgatgc tgccgccgca gggcaggcca acttcccagg
     3061 gcatttcggg atcgccgaga taatcgagct ggcgcggcgc gccatcctca aggcaggcgc
     3121 gggcggcggt aatgacggca ttctccacgc aaccgccgga gacggagccg gcgaattgcc
     3181 catcgctggt gacggcgagg cgcgagccga cgcggcgcgg cgccgagccc cagcaggcga
     3241 tggtggtggc gatggcgaca tttttgccgg cctcttgcca gcgcgccgcc tggcgcagaa
     3301 gatcgacctc gccggcgccc tgcaaagcca gggcggcggg cgaggatgcg gcatcctcga
     3361 agcgttgcgc ctcgctcatt ctgaggcgcg cggggtttat gcttccgtcc ctcatggcaa
     3421 tagcctactc ctcatgtgcg ggcggcgcga gtgacctgcg cagcgtggcg gcgatcatca
     3481 ttcgtttccc cggccaccgg gcttaacggc gcccggttag ctatgatata tagtggatca
     3541 aactgcagga aggaacacgt cagctcatga aaatgaccgg agagcagaat atcgcggcct
     3601 cgcgccagaa agtttgggag gcgctgaacg atcaggaagt gctgaggcaa tcgattccgg
     3661 gctgccagtc cctggagaag gacgcggatg ggcggcttaa cgccgttgtg gcggtgaaga
     3721 tcgggccaat cggggcgcgt ttcgcggggg cggtgacgct ctccgagctg gacccgccga
     3781 atggctacaa gattaccggc gaaggccagg gcggtatggc cggttcagcc aagggcgggg
     3841 ccaaagtgcg gctggcggat gcgccgggtg ggacgctgct ctcctatgag gtggaggccg
     3901 aagtgggcgg gcggctggcg cagctgggcg ggcccatgat cgacgcgacg gcgaagcagc
     3961 tggcgggcaa gtttttcgag cagttcggcg cggtg
//
LOCUS       DASQCV010000533         1808 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_115726, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000533 DASQCV010000000
VERSION     DASQCV010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1808
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115726"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..513)
                     /locus_tag="VEQ16_08120"
     CDS             complement(<1..513)
                     /locus_tag="VEQ16_08120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016791 - phosphatase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HYP63838.1"
                     /translation="MILLRHGQSWFNLHFSATRCDPGIEDPELTELGQAQAEAAAEEL
                     ARACVTRIIVSPYIRTLQTAAPVIRLLPDARVEVMHEVRERAAFACDVGSHPDVLAAR
                     FPEHEFGHLPPRWWHEGLEPEEVVIGRADAFREVMAAREDAETTLLVSHWAFILALTG
                     VSVANGEMIRY"
     gene            634..1305
                     /locus_tag="VEQ16_08125"
     CDS             634..1305
                     /locus_tag="VEQ16_08125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003618181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tim44/TimA family putative adaptor protein"
                     /protein_id="HYP63839.1"
                     /translation="MQTNTLQSLGSFPIALILFAGVAIFLVLRLRSVLGKRVGFERQS
                     PPPAPPFTQGPVIEGQALPVATGRPVPDPQSPLGQRLMQIVQRTSDFDPPKFLEQVET
                     AFRAIVTAFAAGDRATLKSLLTEHVYETFDSAITTREQAGEHHRTEIKSIISTNIESA
                     ELIGDQAAIIVRFVSDQVNLTLDANGNPAEGTDAVVELTDLWTFERNLKAPGPGWRLA
                     AARSG"
     gene            1330..>1808
                     /locus_tag="VEQ16_08130"
     CDS             1330..>1808
                     /locus_tag="VEQ16_08130"
                     /inference="COORDINATES: protein motif:HMM:NF015523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MltA domain-containing protein"
                     /protein_id="HYP63840.1"
                     /translation="MPKLKPGLWAASLLLALASCVPPQSPTANLPGAPPGNRLAFSDL
                     PGWAQDNTADALAAFVLGCQTILRMPPDQPLGGDDMAQAAAGQAGRWQASCTAAQSVP
                     PGDDAAARQFFETNFTVYAVPGQALVTGYFEPEYPGAKNLSPGYRVPLYDKPADDALA
                     "
BASE COUNT          338 a          718 c          455 g          297 t
ORIGIN      
        1 gtagcggatc atctcgccat tcgcgaccga tacgcccgtc agtgccagga tgaaggccca
       61 atggctcacc agcaacgtcg tctccgcatc ttcccgcgcc gccatcacct cacggaacgc
      121 atccgcccgc ccgattacga cctcctccgg ctccagcccc tcatgccacc agcgcggcgg
      181 caaatgcccg aattcatgct ccggaaaccg ggccgccagc acgtcggggt ggctgccgac
      241 atcacaagca aaggccgccc gctcccgcac ctcgtgcatc acctccaccc tggcatcggg
      301 aagcagcctt atgacaggcg ccgccgtctg cagcgtccta atataaggag agacaataat
      361 ccgcgtgaca caagcgcgcg ccaactcttc cgccgccgct tccgcctgcg cctgccctaa
      421 ttcggtcagt tccgggtctt caatccccgg gtcacaccgc gtcgcggaga aatgcagatt
      481 gaaccagctc tgcccatggc gcagcaaaat catttcgtca tcctcatacg cccaccctac
      541 agacctcgac cccgcctcgc caccccgcct ggatcacagg cttgcaatcc tctatgccct
      601 ggcgcagtct ccgtcagacc gcagaggatg ccagtgcaaa cgaatacatt gcaatccctt
      661 ggatcgtttc cgatcgccct gattttgttc gctggcgtcg ctatctttct cgtcctgcgt
      721 ctacgcagcg tccttggcaa gcgcgtcgga ttcgagcggc aatcgccacc cccggcaccg
      781 cccttcaccc agggcccggt catcgaaggc caggctttgc ctgtcgccac cggccgcccg
      841 gtgcccgacc cgcaatcgcc gctcggccag cgcctgatgc agatcgtcca gcgcaccagc
      901 gatttcgacc cgcccaaatt cctcgaacag gtggaaaccg ccttccgcgc catcgtcacc
      961 gccttcgccg ccggcgaccg cgccacgctc aaatccctgc tcaccgaaca tgtctatgag
     1021 acattcgact ccgccatcac cacgcgcgag caggctggcg agcaccatcg cacggaaatc
     1081 aagagcatca tttccaccaa tatcgagagt gcggagctga tcggcgacca ggccgccatc
     1141 atcgtccgct tcgtctccga ccaggtcaat ctcaccctcg acgccaatgg caaccctgcc
     1201 gaaggcaccg acgccgtggt cgagctcacc gacctctgga ccttcgaacg caatctcaaa
     1261 gccccgggcc caggctggcg tctcgccgcc gcgcgcagcg gctgaaaaac cccatgccta
     1321 aaaaacccca tgcctaaatt aaagcctggc ctatgggccg cctccctgct gctggcgctt
     1381 gccagctgcg tccccccgca atctccaacc gcaaacctgc ccggcgcccc gcccggcaac
     1441 cggctcgcct tctccgacct gcccggctgg gcgcaggaca atacagccga cgcgctcgcc
     1501 gccttcgtcc tgggctgcca gaccatcctg cgcatgccgc cggaccagcc cctgggtggc
     1561 gacgacatgg cacaggccgc cgccggccag gctgggcgct ggcaggccag ctgcaccgcc
     1621 gcgcaatccg tcccacccgg cgatgacgct gccgcccgcc aattcttcga aaccaatttc
     1681 accgtttacg ccgtccccgg ccaggctctc gtcacgggct atttcgagcc cgaatatccc
     1741 ggcgccaaaa atctgagtcc cggctatagg gtcccactct acgacaagcc ggccgacgac
     1801 gccctcgc
//
LOCUS       DASQCV010000534         2169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3099718, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000534 DASQCV010000000
VERSION     DASQCV010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3099718"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1186)
                     /locus_tag="VEQ16_08135"
     CDS             complement(<1..1186)
                     /locus_tag="VEQ16_08135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63841.1"
                     /translation="MRRYGAVLMILWTVAGCSLDTGGGGGGGGPAPPCGYGGGGYHAS
                     ASRDMAPPAVPGLQGPWGQNVAMCAPYSSAPPGAMAAMAMINGSIPLDMVQMASGGMP
                     MPGAPPGANLPGVVPVGMLSPPGVPPVPGAPGGNGLVTANVPPGSPQTGGITQANYPP
                     GAVAALPGLENQPHFPTQRTQVRFVRPSFMEVSWFTQGPDGKPSYSDNPIHVPGRYNF
                     LQGAIYRLRLKNIEGRPGLEVYPTLEVVPTNYKTEAFLAHSSVPVSFTDEDFKQISEG
                     NYVVKVIYLPDPQYQELAGSGTEEILSTRLEPGADPIQEALRRGSILLVIRMGNMDQE
                     APNTPPMSAPGPGGLPCPPGMGPGVPGGSPFSGLGYGMGPMGPMPPNMGPMGPMPPNM
                     AGP"
     gene            1336..2148
                     /locus_tag="VEQ16_08140"
     CDS             1336..2148
                     /locus_tag="VEQ16_08140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63842.1"
                     /translation="MRQILFPPTLGFSILLLTGALDRQTLFSNPAAEEAFVPQSATFG
                     AGRLLDEVLAAFSPERIQWLEMTVRQKMWGDDPFEAVGRYVLGTQQRLRLEMDISVEG
                     KTTKVLAVSDGRSFQKSQQIDGVKTILERCRLGKEEKGVDAVSLTWARQKFLDQRGYG
                     GLVPLLRQISDCLVNPCQQVGVWHERRVIRVHGFWNAAEAVLNTLPENLRARSCSLYL
                     DPDTLWPHRIEWLGSDKPGDHQVILLEMEFSEPAINQPLSAAACARMFTIHN"
BASE COUNT          393 a          710 c          652 g          414 t
ORIGIN      
        1 tcggcccggc catgttcggc ggcatcggtc ccatcggtcc catattcggc ggcatcggtc
       61 ccattggtcc catcccatag cccaggccac taaatgggct tccgcccggt acgccaggtc
      121 ccatgcccgg cggacacggc aaaccgcccg gtcccggtgc gctcatcggc ggcgtattcg
      181 gagcttcctg atccatgttg cccatccgga tcacgagcaa aatgctgccg cgtcggagtg
      241 cttcctggat cgggtcggcg ccgggttcca gccgcgtgga caggatctcc tccgtgccgg
      301 agccggccag ctcctgatat tgcggatcgg gaaggtagat aaccttgacc acataattgc
      361 cctcgctgat ttgcttgaaa tcttcgtcgg tgaacgagac gggcacggaa ctgtgagcga
      421 ggaacgcctc ggtcttgtaa ttggtgggca cgacttcgag cgtgggatac acttcgagcc
      481 ccggccggcc ttcgatgttc ttcaggcgca ggcggtagat ggccccctgg aggaagttgt
      541 agcggcccgg cacgtgaatc ggattgtcgg aatagctcgg tttgccgtcc ggtccctggg
      601 tgaaccagga aacttccatg aaactgggcc ggacaaagcg aacctgcgtg cgctgcgtgg
      661 gaaagtgggg ttgattttcc aggccgggca gagcggccac cgctccgggc ggatagttgg
      721 cctgggtaat gccgcctgtt tgcggacttc ccggaggcac attggcggtc acgaggccgt
      781 tgccgcccgg tgcgcccggc acagggggaa cgcccggagg cgacaacatg ccgaccggca
      841 caactcccgg caaattggcg cccggaggcg cgcccggcat gggcatgccg ccgcttgcca
      901 tctgcaccat gtcgagtgga atgctgccat taatcatggc catggcggcc atggcgcccg
      961 gaggcgcaga cgaataggga gcgcacatgg cgacattttg tccccacggg ccctgcaagc
     1021 cgggcacggc cggcggggcc atgtcgcgac tggccgaagc atgatagccg ccgccgccat
     1081 agccgcacgg cggcgccgga ccgcctcccc cgccaccgcc gccggtatcc agcgagcagc
     1141 ccgccacggt ccacaagatc atgagcacag cgccataacg cctcatggat cactccccca
     1201 gattgcctat ttgggcggcc gatttagaat cggccgggat aaaccccgta attcggcttt
     1261 atccctttgt cgcctgtcgt tatatactcg gtccgcctcg cccccgatct ttcgtcaaat
     1321 tcggaacacc ttaccatgcg acagatcctt ttccctccca cccttggctt ctccatctta
     1381 cttttgaccg gcgccctgga tcgccagact ctcttttcca accccgccgc cgaggaagcc
     1441 tttgttcccc agtcggccac gttcggcgcc ggcaggctcc tggatgaagt cctggctgcc
     1501 ttctcgcccg agcgcatcca gtggctggaa atgaccgtgc gccagaaaat gtggggagac
     1561 gacccattcg aagcggtggg ccgatatgtc ctgggcaccc agcagcgcct gcgactggag
     1621 atggacatct cggtggaggg aaagaccaca aaagttttgg cggtcagcga tggccgctct
     1681 tttcaaaagt cccagcagat tgacggcgtc aaaaccatcc tggaacgctg ccggctgggc
     1741 aaggaagaaa aaggcgtcga cgcggtttcc ctgacctggg cccgacagaa attccttgat
     1801 cagcgcggct acggcggcct ggttccgctg ctgcgccaga tctccgactg cctggtaaac
     1861 ccttgccagc aggtaggcgt ctggcatgag cgccgggtta ttcgtgttca cggtttctgg
     1921 aatgccgccg aagccgtgct caataccctg ccggaaaacc tccgcgcccg ctcctgtagc
     1981 ctctacctcg atcccgatac cctctggccg caccgcatcg agtggctcgg ctcggataaa
     2041 cccggcgatc accaggtcat cctcctggaa atggagtttt ccgagccggc gatcaaccaa
     2101 ccgctatccg cagcagcctg cgcccgcatg tttacgattc acaattagca tagtctggcg
     2161 agcccggtg
//
LOCUS       DASQCV010000535         1813 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2436694, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000535 DASQCV010000000
VERSION     DASQCV010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1813
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2436694"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..>1813)
                     /locus_tag="VEQ16_08145"
     CDS             complement(151..>1813)
                     /locus_tag="VEQ16_08145"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HYP63843.1"
                     /translation="VLVFFLVSIIITTCMLFWYTRCIRSTALVVTASLTAVVWQMGLL
                     TLLHIDLTPYSVLVPFLVFAIGMSHGAQKMNGVMQDIGRGTHRLVAARYTFRRLFLAG
                     FVALVCDATSFAVLMVIRISAIQQLATVATIGVALLVVTNLILIPITLSYIGVNPKAA
                     ERSQRTGVNYTSKRNAVWAFLDLFTQRKWASLAILGGLLVAGVGYYVGRNVQIGDLDP
                     GAPELRQDSQYNKDNAFIISHYAVGSDSMVVMVDTPAGTCLDYPTLSTMERLQWKLQQ
                     MPEVASTASVSTFQDYILSGLTEGAPKWFGLEPDADLIYQSQLYVPRQLMNFDCSFDP
                     IYISLVDHKAATLTAVLNAAQTFINDPSNHGPGFKMSLVGGNAGIAAATNIVVDQANT
                     IMLVLIYTVVTIFCFIAFRSWRAVLCAIIPLIITSILAQALMVWLHIGIKVATLPVSA
                     LGVGIGVDYALYVLSILLRFLRGGLPLSEAYYETLMSTGKVVLLTGFTLALGVSTWIF
                     APIKFQADMGLLLSFMFLWNMLGAMVLLPALASFLLPAKLFVTKA"
BASE COUNT          396 a          532 c          592 g          293 t
ORIGIN      
        1 cagcgtcgtc tttgctttat cgccgccgcg ataaaggctt tggtcaaacc tcatctttca
       61 cgaaaccggc gcggcttctg cagcctgaac cacgagatat agcctgccgc gtcaaaaagg
      121 gggcccggaa gccccctttt ccgtctggct ttacgccttc gtcacaaaca atttggccgg
      181 gagcaggaag ctcgccaagg cgggcagcag gaccatcgcg cccagcatgt tccacaggaa
      241 catgaaggag agcagcaggc ccatatccgc ctggaacttg atcggcgcga aaatccaggt
      301 ggacacaccg agcgccaggg tgaagccggt aagcagcacc actttgccgg tggacatcag
      361 cgtctcgtaa taggcttccg aaagcggcag cccgccgcgc aggaagcgca gcagaatgga
      421 cagcacgtac agcgcgtagt ccacgccgat accgacgccg agcgccgaga ccggcagcgt
      481 cgccaccttg atgccgatat gcagccacac catcagcgcc tgggccagga tggaggtgat
      541 gatcaacggg atgatggcgc acagcaccgc ccgccaggag cggaaggcga tgaagcagaa
      601 gatggtgaca acggtataga tgagcaccag catgatggta ttggcctggt ccaccacgat
      661 gttggtcgcc gcggcgatgc cggcattgcc gccgaccagc gacatcttga agccggggcc
      721 atggttcgat ggatcgttga tgaaggtctg cgccgcgttc agcaccgccg tcagcgtcgc
      781 cgccttatgg tcgaccagcg agatatagat cgggtcgaag gagcagtcga aattcatcag
      841 ctggcgcggc acatagagct gactctgata gatcagatcg gcatcaggct cgagcccgaa
      901 ccatttcggc gcgccctcgg tcaggccgga caggatgtag tcctggaagg tcgacaccga
      961 cgcggtggac gccacttccg gcatctgctg caacttccat tgcagccgtt ccatggtgga
     1021 gagggtcggg tagtcgaggc aggtacccgc cggcgtgtcc accatcacca ccatcgagtc
     1081 cgagccgacg gcgtaatggc tgatgatgaa ggcgttgtcc ttgttatatt gcgagtcctg
     1141 gcgcaattcc ggcgcgccgg gatcgagatc gccgatctgc acgttgcggc ccacataata
     1201 gccgacgccc gccaccagca gcccgccgag aatggcgagc gaggcccatt tgcgctgggt
     1261 gaacagatcg aggaaggccc agaccgcatt gcgcttgctg gtgtagttga cgccggtgcg
     1321 ctggctgcgc tcggcggcct tcggattcac gccgatatag ctcagcgtta tggggatgag
     1381 gatgaggttg gtgacaacga gcagcgcaac gccgatggtg gccaccgtgg cgagctgctg
     1441 gatggcgctg atgcggatga ccatcagcac ggcgaaggag gtggcatcgc acacaagtgc
     1501 gacgaagccg gccaggaaca agcggcggaa ggtgtagcgc gccgcgacga ggcggtgcgt
     1561 gccgcggccg atatcctgca tcacgccgtt catcttctgc gcgccatggc tcatgccgat
     1621 ggcgaagacg aggaagggca ccagcaccga atagggcgtg aggtcgatat gcagcagggt
     1681 cagcaggccc atctgccaca ccacggcggt gagcgaggcc gtcaccacca aagcggtgga
     1741 gcggatacag cgcgtgtacc agaacagcat acaggtggtg atgatgatcg agaccaggaa
     1801 gaagaccagg acc
//
LOCUS       DASQCV010000536         2232 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_777628, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000536 DASQCV010000000
VERSION     DASQCV010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_777628"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..>2232
                     /locus_tag="VEQ16_08150"
     CDS             142..>2232
                     /locus_tag="VEQ16_08150"
                     /inference="COORDINATES: protein motif:HMM:NF015155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HYP63844.1"
                     /translation="MRRKQNGLVIWLVLLVLGGLIAARTSYRTDMGDFLPRAGSPAQR
                     LLAGQVNGGAASHILLLALTGAPAPVLANLSASLATQLRHDPAFLDVLNGGPDSFAGV
                     QDYLWKNRYLLVPSDFSAPGLHTALQSGLFQLSSPLGLAVGQGLSADPTGAMQTLLGR
                     IASGPAPAMLNGVWMKPDGSAALLLVHTTAPGFNLDAQQQAQAQITAAFTQAKAGMAG
                     AGGATLRMSGPGVFAVQTRDTTKQDVSRLSALALLGAASLLLFAYRSPLMLLLGLLPI
                     LGGALAGIAAVSLVFGFVHGITLGFGVTLIGESLDYAIYLFTQTRQGEGGADTLSRIW
                     PTLRLGALTSCAGFAAMLASSFTGFAQLGLFSIAGLAAAAATTRFVLPHLMPSGFFAF
                     GAAPLARPVFLLHRHRRPARGIIALAALASLIALALHRGPMWDSNLLNLSPIPPAQQR
                     LDADLHAALGLQGQRYFALLPAASAQDALERSEALAPQLDALVAAQKLGAYMLPSTLL
                     PSDRTQRQRQASLPNGATLHANFLQAAAGLPFNVTAFAPFFADEAATRAAPLLTPERL
                     PPALALQFSSLLTSEGAGWMVMAPLSNVSDPITVARHLAAAGADFADLDAESSKLLQN
                     FQSQAVTLAVAGSLAVLVLLLLFLRSWRRVLAVAAPLAAAVLITAALLTLGGAKLSIF
                     MVAGFLLIIAIGSNY"
BASE COUNT          304 a          895 c          617 g          416 t
ORIGIN      
        1 ttctgccgcg cgatcccgcc ctggcccatt ttctccgcgc cgtcaccatc agcggcgcgc
       61 aggggcaagt caccctcatt gacacgctga gcaccgatgg cggcgagtcc cgcatgagca
      121 tcgcccccgc cgctaccgaa aatgcgccgt aagcaaaatg gtctcgttat atggctcgtc
      181 ctgctggtac tgggcggcct gatcgccgcg cgtaccagct accgcacgga catgggcgat
      241 ttcctccccc gcgccggatc gcccgcgcag cgtctgctcg ccggccaggt gaatggcggt
      301 gccgcctcgc atattttgct cctcgccctc accggtgccc cagcacccgt gctggcgaac
      361 ctaagcgcta gcctcgccac gcaattgcgc cacgatcccg ccttcctaga cgtgctgaat
      421 ggcggaccag actccttcgc gggcgtgcag gattatctct ggaaaaaccg ctatctcctc
      481 gtcccaagcg atttttccgc acccggcctc cacaccgcct tgcagtccgg cctcttccaa
      541 ctcagctcac ccctcggctt ggcggtgggg caaggcctat ccgccgaccc caccggcgcg
      601 atgcagaccc tgctcggacg cattgccagc ggccccgcgc ccgccatgct gaatggcgta
      661 tggatgaaac cggacggcag cgccgccctg ctcctggtcc atacaaccgc gcctgggttc
      721 aacctggacg cccagcagca ggcgcaggcg cagataaccg ccgccttcac ccaggccaag
      781 gcgggcatgg ccggggcagg gggcgcaacc ctgcggatga gcggccccgg cgttttcgcc
      841 gtgcagacgc gcgacaccac gaaacaggac gtctcccgcc tctcagcttt ggcccttctc
      901 ggcgcggcct ccctgctgct attcgcctat cgctcgccgc tgatgctgct gctcgggctg
      961 ctgcccatcc tcggcggcgc gcttgccggc atcgccgccg tgtctttggt ctttggcttc
     1021 gtgcatggca tcacgctcgg cttcggcgtc accctcatcg gagaatcgct cgattatgcc
     1081 atctatcttt tcacccagac caggcagggc gagggcggcg cggacacgct gtcacgcatc
     1141 tggcccacgc tgcggctggg cgcgctcacc tcctgcgccg gttttgccgc catgctggcc
     1201 tccagcttca ccggtttcgc gcaattgggg ctgttctcca tcgccggcct tgccgccgcg
     1261 gctgccacca cgcgcttcgt gctgccgcat ctcatgccgt ccgggttctt cgcgttcggc
     1321 gccgcgccgc tggcccgtcc ggtatttctg ctccaccgcc accggcgtcc agcacgcggc
     1381 atcatcgccc tggccgcgct tgcctccctc attgctttgg ccctgcatcg cggcccgatg
     1441 tgggattcca acctgctcaa tctgagcccc atcccgcccg cccagcagcg cctcgatgcc
     1501 gatttacatg ccgccctcgg cctgcagggc cagcgctatt ttgcactcct ccccgccgcc
     1561 agcgcgcagg acgccctgga acgcagcgag gccctcgccc cccaactgga cgcgctggtg
     1621 gcagcgcaaa aactcggcgc ctacatgctg cccagcacac tcctgcctag cgaccgcacc
     1681 cagcgccagc gccaggccag cctgcccaac ggcgccacgc tccacgccaa ttttctccag
     1741 gccgccgcgg gcctgccctt caacgtcacc gcctttgccc ccttcttcgc ggacgaagcc
     1801 gccactcgcg ccgcgccgct gctcacgccg gagcgcctgc ctcccgccct ggcgctgcaa
     1861 ttctcatcgc tcctcacatc tgagggcgcg ggctggatgg taatggcccc gctctccaat
     1921 gtcagcgacc ccataaccgt cgcccgccat ctcgccgccg ccggcgccga ttttgccgac
     1981 cttgacgcgg aatccagcaa actcctgcag aattttcagt cccaggccgt caccctggcc
     2041 gttgccggca gcctcgcggt cctggtcctg cttctcctct tcctgcgctc ctggcgccgc
     2101 gttcttgccg tcgccgcgcc gctcgccgcc gccgtgctca tcaccgccgc cctgctcacg
     2161 ctgggcgggg caaaactatc catcttcatg gtggcgggtt tcctgctcat catcgccatc
     2221 ggctccaatt ac
//
LOCUS       DASQCV010000537         2115 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1443743, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000537 DASQCV010000000
VERSION     DASQCV010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2115)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2115)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2115
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1443743"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1283)
                     /locus_tag="VEQ16_08155"
     CDS             complement(<1..1283)
                     /locus_tag="VEQ16_08155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-utilizing N-terminal
                     domain-containing protein"
                     /protein_id="HYP63845.1"
                     /translation="MQSGADPTPKRRKRKPKFGDTRRLFAALREHLASGTASLADIAR
                     LVTEGLQADAAVIYIARPGEILELAAVQGLNISAVGHTRLRAGEGIIGMVAASGDILN
                     LADAQNHPRYVYRAEIGEEEMASMLAVPVKRAGRTLGVIAVMSRDARAYTPMEVEALA
                     TVSLLLAELLVKAGATNIGEEGFSDTLPRRFAGHVLSAGIARGKILPYGAPPPIARLL
                     TDDSDAEIQRLEAAVETVNKGLDKLFAANVPAGSTSRDVLEAYRMITQSAGWLTQIRE
                     AINDGLTAETAVDKVARSLRDRMRRIADPYLRERLADIEDMVGRLMVALGGMAPKPER
                     ADGLLLLVRRLGPADLLDWHTRGIAGVAIEEASASGHAAILARALGLPALQVDRGAVD
                     VAQEGDPAILDAEGATLILRPEPAVVEVYERALEAR"
     gene            complement(1267..>2115)
                     /locus_tag="VEQ16_08160"
     CDS             complement(1267..>2115)
                     /locus_tag="VEQ16_08160"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010507872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016703 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of one atom of oxygen (internal
                     monooxygenases or internal mixed function oxidases)
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HYP63846.1"
                     /translation="ALLEKEIEATKALTSKPFGVNLITMHPQLDELVQVCVRQKVGHV
                     VFAGGIPTTSHIKAAKENGAKVIAFAPALVLAKRLIKSGADALVIEGSEAGGHIGPVS
                     LTVLAQEILPHITEVPVFVAGGLGRGEAILGYLEMGAAGAQLGTLFAASSESIAHENF
                     KKAFVRANARDAMPSVQLDERFPVIPVRGLTNEGTKRFMRHQAEVAQKFQAGELDKTA
                     AQLEIEHFWAGALRRAVIEGDVESGSVMAGQSVGMVTEILPVAEILAALKAQAISALA
                     ARAERG"
BASE COUNT          338 a          725 c          709 g          343 t
ORIGIN      
        1 cgggcttcca gcgcgcgctc atacacctcc accaccgcgg gctcggggcg caggatgagg
       61 gtggcgccct ccgcgtcgag aatggcgggg tcgccttcct gcgccacgtc cacggcaccg
      121 cggtctacct gcagggcggg caggccgagc gcgcgggcga gaattgcggc atggccggag
      181 gcggaagcct cttcgatggc cacgccggca atgccgcgcg tatgccagtc cagaagatca
      241 gccggcccca ggcggcgtac caggagcagc aacccgtcgg cgcgctccgg cttgggcgcc
      301 atgccgccga gggccaccat cagccgcccg accatgtcct cgatatccgc caggcgctcg
      361 cgcagatacg ggtcggcgat gcggcgcatg cggtcgcgta aagatcgcgc caccttgtcc
      421 accgccgtct cggccgtgag cccatcattg atggcctcgc ggatctgagt gagccagccc
      481 gcgctctgcg tgatcatgcg gtaggcttcc agcacatcgc gcgaggtgga gccggctgga
      541 acattggcgg cgaagagctt gtccagcccc ttattcaccg tctccaccgc cgcctccagg
      601 cgctggattt cggcgtccga atcgtcagtg agcaggcggg cgatgggggg cggcgcgcca
      661 tagggcaata tcttgccgcg cgcgatgccg gcggacagta catgcccggc gaagcgccgg
      721 ggcaaagtgt ccgagaaacc ttcctcgccg atattggttg cgcccgcctt caccagcagc
      781 tcggccagca ggagcgacac ggtggcgagc gcttccacct ccatcggcgt ataggcccgt
      841 gcgtcgcgcg acatcacggc gatgacgccg agcgtgcgcc cggcgcgctt caccggcacg
      901 gcgagcatgg aggccatctc ctcctcgccg atttcggccc ggtagacata gcgcggatgg
      961 ttctgcgcat cggcgaggtt gagaatgtcg cccgaggcgg cgaccatgcc gatgatgccc
     1021 tcgccggcgc gcaggcgcgt atggcccacg gcgctgatat tcagcccctg gacggcggcg
     1081 agctcgagga tttcccccgg tctcgcaata tagatgacgg cggcatccgc ctgcagcccc
     1141 tcggtgacga ggcgggcaat atcggcgagg ctggcggtgc cggaggccag atgctcccgg
     1201 agcgcggcaa aaagccgcct tgtatcgccg aatttcggct tgcgcttgcg ccgtttcggc
     1261 gtggggtcag ccccgctctg cacgcgccgc cagggcagag atggcctgcg ccttcagcgc
     1321 cgccagaatc tcggcgacgg gcagaatttc cgtcaccatg ccgaccgact gcccggccat
     1381 gaccgagccg ctttccacat ccccctcgat gacggcgcgg cgcagggcgc cggcccagaa
     1441 atgctcgatt tccagctgcg cggcggtctt gtccagctcg cccgcctgga atttctgcgc
     1501 cacctcggcc tggtggcgca tgaagcgttt tgttccctcg ttggtcagcc cgcgcacggg
     1561 gatgacgggg aagcgttcgt cgagttgcac ggagggcatc gcatcgcgcg cattggcgcg
     1621 gacgaaggcc ttcttgaaat tctcatgggc gatgctctcg gacgaggccg cgaacaaggt
     1681 gccgagctgc gccccggcgg cacccatctc cagatagccg agaatggcct cgccgcgccc
     1741 gagcccgccc gcgacgaaga ccgggacttc cgtgatgtgc ggcaggattt cctgcgccag
     1801 cacggtgagc gagaccgggc cgatatgccc gcccgcctcg gaaccctcaa tgaccagcgc
     1861 atcggcgccg gacttgatca gccgcttcgc cagcaccaga gccggggcga aggcaatcac
     1921 cttggcgcca ttttccttgg cggccttgat gtgggaagtt gtgggaatcc cgcccgcgaa
     1981 aaccacatgg ccgactttct ggcgcacgca gacctgcacc agctcatcga gctgtgggtg
     2041 catggtgatg agattcacgc cgaacggctt ggaggtgagc gccttggtcg cctcgatttc
     2101 cttctccagc agggc
//
LOCUS       DASQCV010000538         2537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2934647, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000538 DASQCV010000000
VERSION     DASQCV010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2934647"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..786
                     /locus_tag="VEQ16_08165"
     CDS             <1..786
                     /locus_tag="VEQ16_08165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010503886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HYP63847.1"
                     /translation="ETYDVIVQPPADRAYTIFAQAEDRTGYARGTLAPRSGMAAPIPP
                     MDPRPLRTMTDMGMGGMPHGSMSGMDHSVMPGMDHGSMQGMSGIEASPEAKELQGRVG
                     VDNVAEMPTERLDQAGEGFPAGRRVLTYADLRAARPGGDPRPPSRDITLHLTGNMERF
                     IWGFDGKKFSEAGPIVLQRGERVRFVLINDSMMEHPIHLHGLWSELENGHADYRPYKH
                     TINVKPGEKLSYLVTADEPGRWAYHCHLLYHMEMGMFREVRVA"
     gene            783..1547
                     /locus_tag="VEQ16_08170"
     CDS             783..1547
                     /locus_tag="VEQ16_08170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011632729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein B"
                     /protein_id="HYP63848.1"
                     /translation="MSALRIIPFAGVLVALAIPAAAQSPAANMEPGTGMEAGSMPPVM
                     DRGIFAHAIFNQLEGRWNGGSTQFRWDGQGWAGTDYDKLWIKSEGTVSNGALDDGQHQ
                     FLYSRAITTYFDLQGGLRSDLDSRPTRNWAALGIQGLARYFFDLELTGFVSGQGHLAA
                     KLEASYDLLLTQRLILQPQVEVNVYSKSDPARLTGDGFSDIDTGLRLRYEFSRQFAPY
                     IGVVYEGKFGQTANFARQAGESTGDVRFVFGVRAWF"
     gene            1559..2107
                     /locus_tag="VEQ16_08175"
     CDS             1559..2107
                     /locus_tag="VEQ16_08175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HYP63849.1"
                     /translation="MRTVIVSLLIAVLGAALGAGAAIYAGLYDVAATSPHWRATSWLL
                     ETARTRSIKAQAAWITAPPGLGDPANVILGVGHYAAHCAVCHGAPGVPRRDIAQGLYP
                     PPPDLAKAASLYTPAELFWIIKHRHQDDRHAGLERSQRRGDLGDGRLPRKAAGHERGG
                     LRPPCDGEHGSRRPPRFQQRRQ"
BASE COUNT          472 a          829 c          794 g          442 t
ORIGIN      
        1 gaaacctatg acgtcatcgt gcagccgccg gccgaccgcg cctacacgat cttcgcccag
       61 gccgaggacc gcaccggcta tgcccgcggc acgctggcgc cgcgctccgg catggctgcg
      121 ccgattccgc cgatggaccc gcgacccctg cgcaccatga ccgatatggg catgggcggc
      181 atgccgcacg gttcgatgtc cggcatggat cacagtgtga tgccgggcat ggaccacggc
      241 tccatgcaag gaatgtccgg catagaggca agccccgaag ccaaagagct tcagggccgc
      301 gtcggcgtcg acaatgtcgc cgagatgccg accgagcggc tggaccaggc cggcgaaggc
      361 tttcccgccg ggcggcgggt gctgacctac gccgatcttc gcgccgcgcg gccgggcggc
      421 gatccgcgcc cgccctcgcg cgacattacc ctgcatctca ccggcaacat ggagcgcttc
      481 atctggggct tcgacggcaa gaaattctcc gaagccgggc cgattgtcct gcagcgcggc
      541 gaacgcgtgc gtttcgtgct gatcaatgac tcgatgatgg agcacccgat ccatctgcat
      601 ggcctgtgga gcgagctcga gaacgggcac gccgactatc gtccctacaa gcacacgatc
      661 aacgtcaaac cgggcgagaa gctgagctat ctcgtcaccg ccgacgagcc cggccgctgg
      721 gcctatcact gccatctgct ttaccacatg gagatgggca tgtttcggga ggtgcgcgtt
      781 gcatgagcgc tctccgcatc atcccatttg ccggcgtgct cgttgccctg gcaatcccgg
      841 ccgccgccca aagtcccgcc gccaacatgg agccaggcac cggcatggaa gccggctcga
      901 tgcctccggt gatggaccgc ggcatcttcg ctcacgccat cttcaatcag ctcgagggcc
      961 gctggaacgg cggcagcacc cagtttcgct gggacggaca gggatgggcc ggcaccgatt
     1021 acgacaagct ctggatcaaa tccgagggca cggtaagcaa cggcgcgctc gacgacggcc
     1081 agcaccagtt cctctacagc cgcgccatca cgacctattt cgatctgcag ggcggcttgc
     1141 gcagcgatct tgattcacgg cccacgcgca actgggccgc gctcggcatc cagggtcttg
     1201 cccggtattt tttcgatctg gaactgacgg gcttcgtgag cggccagggc cacctcgccg
     1261 ccaagctgga agcttcctac gatctcctgc tcacgcagcg gttgatcctg cagccgcaag
     1321 tcgaggtgaa cgtttacagc aagtcggacc cggcccgcct gaccggcgac ggcttctctg
     1381 acatcgatac cggcctccgg ctgcgctacg aattcagccg gcaattcgcg ccctacattg
     1441 gcgtcgtcta cgaaggaaaa ttcggccaga ccgcaaattt tgcccggcaa gcgggcgaga
     1501 gcaccggcga cgtacgcttc gtcttcggcg tccgcgcctg gttttgaggg aggaggcgat
     1561 gcgaaccgtt atcgtctccc ttcttattgc cgtgcttggg gccgcgcttg gcgccggcgc
     1621 tgcgatctat gccggtttgt acgatgttgc cgccacgtcg ccgcattggc gcgcgacaag
     1681 ctggctgctc gaaacggcac gcacccgctc catcaaagcg caagccgcct ggatcaccgc
     1741 gccgcccggg ctcggcgatc cggcgaacgt catcctcggc gttgggcatt acgcggcgca
     1801 ttgcgccgtc tgccacggcg cgcccggcgt ccccaggcgc gatatcgcgc aggggcttta
     1861 tccgccgccg ccggatctgg cgaaagccgc gtcgctctac acgcccgccg aactgttctg
     1921 gatcatcaag catcggcatc aagatgaccg gcatgccggc ctggagcgat cacagcgacg
     1981 aggagatctg ggcgacggtc ggcttcctcg aaaagctgcc gggcatgagc gaggaggact
     2041 acgcccgcct tgtgatggcg agcatggctc acggcggcca ccacgattcc agcaacggcg
     2101 gcaataaccc aaggtagccc gatatccacg agaagccctg atcaataacc cctggcaaga
     2161 ccggagcccg cgagacaggc cgcagaggtg ccgccaatga tgagagcact atccgatgtc
     2221 cgaaaatggc actgaccggc tgtgccagcc tgtccataat acttccgttg tgggaggttg
     2281 aacagccgtg ctgcgccgag caaagaagga acgactgctt tcgcggcggc cgcttgtttc
     2341 cggtattctg aagcggtggg cggtcaggca tatccggcca ttgctgtgga atggggagag
     2401 tggccgccgt aggtaaatcc ccgtccgtct gcgcgtgaac tagagcaaga ttctaacagg
     2461 ctgaatcaaa aagaggattc ccgtatttgg agttttgtga ttcaagatgc tggctggggc
     2521 tgggggctag catcgaa
//
LOCUS       DASQCV010000539         1610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3265561, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000539 DASQCV010000000
VERSION     DASQCV010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3265561"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..271)
                     /locus_tag="VEQ16_08180"
     CDS             complement(<1..271)
                     /locus_tag="VEQ16_08180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63850.1"
                     /translation="MRPLTTATPQLEALRALNNAHAQELSFADAPRFAHLVAQAFFAW
                     HIGTDAFIIAFDQNADYDSENFLWFRARFPRFVYVDRVVTGPQARG"
     gene            complement(368..1195)
                     /locus_tag="VEQ16_08185"
     CDS             complement(368..1195)
                     /locus_tag="VEQ16_08185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63851.1"
                     /translation="MRGLRLGFLACGVSLLALTPALAQEVNSSHATIAAAETNINISV
                     GFMHTQYSEGPPDSENGFTPGFGVGASALLPSAWQNIDYYAAFAYQFNAGNLTYNGHY
                     LYSGAPLTATDRAVFNRIQARMGLGFPLAGGALEIIPYFTAGYQSWNRNIDVEGAQGT
                     DEFYSSALVGGGLKLDIPITATIVASGGAEFLGMVGNHVDNNLVGIGFGMGNSAQQRI
                     SLGLDSVLYGPLHLQANANWTHFNYAGSKPSYATYGYFEPLSSTTQVGVNLGLAYSF"
     gene            1410..>1610
                     /locus_tag="VEQ16_08190"
     CDS             1410..>1610
                     /locus_tag="VEQ16_08190"
                     /EC_number="5.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RpiB/LacA/LacB family sugar-phosphate isomerase"
                     /protein_id="HYP63852.1"
                     /translation="MTRSLLIALGADHGGVALKNRLAKVLVEAGHQLMDFGTDSTESV
                     DYPDFAHAVCGAVVEKRADFGLL"
BASE COUNT          318 a          460 c          523 g          309 t
ORIGIN      
        1 ggccgcgcgc ctgcgggccg gtcaccacgc ggtcgacata gacgaagcgc gggaagcggg
       61 cgcggaacca gaggaaattc tcagaatcat agtccgcgtt ctggtcaaag gcgatgatga
      121 aggcgtccgt gccgatatgc caggcaaaga aggcctgtgc cacaagatgg gcgaagcgtg
      181 gcgcatcggc gaaggagagc tcctgggcat gagcgttgtt gagggcgcgc agggcttcga
      241 gctggggcgt ggccgtggtc agggggcgca tggggggtta ttggcgcgtt tgggcgttta
      301 aggccagggc tcggccttcg gcccggcagg gggaacccct ggcacttcct caaaaaggca
      361 cgccccctta gaaactataa gcaagcccca gattcacccc gacctgggtc gtgctgctca
      421 gcggctcgaa atagccatag gtcgcgtagg atggtttgct gccggcatag ttgaaatgcg
      481 tccaattggc gttggcctgg aggtgcagcg gcccgtacag cacgctatcc agcccgagcg
      541 agatgcgttg ctgggccgag ttgcccatgc cgaagccgat gccgaccaga ttattgtcga
      601 catgattgcc gaccatgccc aggaattccg caccgccgga ggcaacgata gtggctgtga
      661 tgggaatatc gagtttcagg ccgccaccga cgagggcgga gctatagaat tcatcggttc
      721 cctgggcgcc ctcgacatcg atgttgcggt tccaggactg atagccggcg gtgaaatagg
      781 ggatgatttc cagggcccct ccggcgaggg ggaagcccag acccatccgc gcctggatac
      841 ggttgaacac ggccctgtcg gtcgcggtca gcggtgcgcc gctatacaga taatgcccgt
      901 tataggtcag gttgccggcg ttgaactggt aggcaaaggc ggcgtagtaa tcgatattct
      961 gccaagccga aggcagcagc gcactggcgc cgacgccaaa gccgggggtg aagccattct
     1021 cggaatccgg cgggccttcg ctgtactgcg tatgcatgaa gccgacggag atattaatgt
     1081 tcgtctccgc cgccgcgatg gttgcgtgcg agctgttcac ctcctgcgcc agggctggcg
     1141 tcaacgccag cagcgaaacc ccgcatgcca gaaacccgag ccgcaaaccc cgcatagtct
     1201 tcttggtcct tataacaacc tgttcatttt acgttatatg gcgatctttc tccaccgcaa
     1261 taatacggcg ccgctccggc gtgcaaaacc tccgggtgcg gcatatcagc aacggtaata
     1321 ttgtgacgcg ccgcgggctg catgggtgcc tcggcaaatc gtcgggcccg agtcatttca
     1381 atgaatgttg ctgcatgata agggggcaca tgactcgctc tttgctcatt gccctgggcg
     1441 ccgaccatgg cggcgtcgcc ttgaaaaacc gcctcgccaa ggtgctggtc gaggccggcc
     1501 atcagctcat ggattttggc acggacagca ccgagagcgt cgattaccct gatttcgccc
     1561 atgccgtctg tggcgccgtg gtggaaaaac gggccgattt tggcctgctg
//
LOCUS       DASQCV010000540         1587 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2437957, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000540 DASQCV010000000
VERSION     DASQCV010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2437957"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VEQ16_08195"
     CDS             <1..324
                     /locus_tag="VEQ16_08195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016638 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase-related protein"
                     /protein_id="HYP63853.1"
                     /translation="APELEEEYQKLGTTAGAYDDWHEGRDPAGITTQDPVLAARLDPI
                     KAGRRLANYLSVLTLEAQTIARACGKSHLHNLEPEDLVALTIEAAAMAQVPLAGTGWV
                     PGKNF"
     gene            340..>1587
                     /gene="glnT"
                     /locus_tag="VEQ16_08200"
     CDS             340..>1587
                     /gene="glnT"
                     /locus_tag="VEQ16_08200"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III glutamate--ammonia ligase"
                     /protein_id="HYP63854.1"
                     /translation="MTIDLAAKAKELGLKYFLISYTDLFGSQRAKLVPAAAISGMQKN
                     GAGFAGFATWLDMSPADSDMFAIPDPTTLTPLPWKPEVGWLASDIWMDGKPVAQGPRL
                     VLKRVMEQAKAAGYQMKSGVECEFFLTLPDGSAISDPADIAAKPCYDASALLRRYDVI
                     TEICDAMLALGWGAYQNDHEDANGQFEMNWNYDDALITADRHVFFKFMAKSIAEKHGL
                     RATFMPKPFLGLTGSGCHSHVSLWNGDKNLFEDEAGELGVSTLGYNFIAGAIKHADGL
                     AALLNPTVNSYKRINAPRTLSGATWSPNTVTYSGNNRTHMIRIPEPGRFEMRLADGAA
                     NPYLLQAGILAAGLDGIALKLDPGKRLDINMYTDGHTVKDAKRLPLNLLDALRALDAN
                     PTLKAALGESFVASYIKLKTGEWN"
BASE COUNT          323 a          515 c          451 g          298 t
ORIGIN      
        1 gcgccggagc tcgaggagga ataccagaag ctcggcacca cggcgggcgc ttatgatgat
       61 tggcatgaag gccgtgaccc ggccggcatc accacgcagg accctgtgct ggcagcgcgg
      121 ctggacccaa tcaaggctgg gcggcgcctc gccaattatc tctccgtgct cacgctggag
      181 gcgcaaacca tcgcgcgcgc ttgcggcaag agccatctgc ataatctcga accggaagac
      241 ctcgtggcgc tcaccataga ggccgcggcc atggcacagg tgccactggc ggggacaggc
      301 tgggtaccgg gtaagaattt ctaacagggt agcaacaaga tgacgattga tctggccgcg
      361 aaggcgaaag agctgggact aaaatatttc ctcatttctt acactgatct gttcggcagc
      421 cagcgcgcaa agctggtccc cgccgcggcc atttccggca tgcagaaaaa cggcgccggt
      481 ttcgccggtt tcgccacatg gctcgatatg tcgcccgccg attccgacat gttcgccatc
      541 cccgacccca cgaccctcac acctttgccc tggaaacccg aagtgggctg gctcgcttcc
      601 gacatctgga tggacggcaa gccggtggcg caggggccgc gtttggtgct caagcgcgtg
      661 atggagcagg ccaaagccgc cggctaccag atgaaaagcg gcgtggaatg tgaatttttc
      721 ctgaccctgc ctgatggttc cgccatctcc gaccctgccg acatcgccgc gaaaccctgt
      781 tacgacgcct cggccctgct gcgccgttat gatgtcatca cggaaatctg cgacgccatg
      841 ctggctctcg gctggggcgc ctaccagaac gaccatgagg acgccaatgg ccagttcgag
      901 atgaactgga attacgacga cgccctcatc accgccgacc gccatgtatt ttttaaattc
      961 atggccaagt ccattgccga aaagcacggg ctgcgcgcca cattcatgcc gaagcccttc
     1021 ctcggcctca ccgggtctgg ctgccattct catgtctcgc tctggaatgg cgacaaaaac
     1081 cttttcgagg acgaagccgg cgagcttggc gtctccactt tgggctataa tttcatcgcc
     1141 ggtgccatca aacatgctga cggcctggcg gcgttgctga atcccacggt taatagctac
     1201 aagcgcatca acgccccgcg caccctctcc ggcgccacct ggtcgcccaa taccgttacc
     1261 tattccggca ataaccgcac gcacatgatc cgcattcccg agccgggccg gttcgaaatg
     1321 cgcctcgccg atggtgccgc caacccctat ctactgcagg ctggcattct cgccgccggg
     1381 ctcgacggca ttgcgctgaa gctcgatccc ggcaagcggc tggacatcaa tatgtacacg
     1441 gacggccata ccgtgaagga tgccaagcgc ctgccactca acctgctcga tgcgctgcgg
     1501 gcgctggacg ccaacccgac gctgaaggcc gcgctgggtg agtcttttgt tgcttcctac
     1561 atcaaattga agacgggcga atggaac
//
LOCUS       DASQCV010000541         1661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1776041, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000541 DASQCV010000000
VERSION     DASQCV010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1776041"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..698)
                     /locus_tag="VEQ16_08205"
     CDS             complement(<1..698)
                     /locus_tag="VEQ16_08205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63855.1"
                     /translation="MNWLRQRSALAVFVILALTAAALGAIPTQPASAAATGQAAEEKW
                     GVDRALELTPQPEPKPALGYRLFPLASDRKPGNAVPIYLRLAHERNDASRRILAETPR
                     KWNKLPIDQIPLDEARKFLKSWHTVLRQLELGATRKQAEWNYTFDQGSVIDILLPDAQ
                     TMRSYVPILILKARVELAEGNFAGAAHWLQTGLAFSQHAGSGPFLINRLVGIACANQC
                     LECVLDFMERPGEP"
     gene            complement(742..1215)
                     /locus_tag="VEQ16_08210"
     CDS             complement(742..1215)
                     /locus_tag="VEQ16_08210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63856.1"
                     /translation="MDTLPPSSGDLNDLERRLSALQPSTAGLDAGNMLFAAGRDSARP
                     GMGRLVWPVLSGCLALAALVLGVGLLQERQVRQELAAQLQRQTPGPVAPADVPQPDIV
                     PANETPAPTSYLAAARALAQSQDWPTLAMGDPLKGPASPSRSIWWAGQRDHVLNP"
     gene            complement(1187..>1661)
                     /locus_tag="VEQ16_08215"
     CDS             complement(1187..>1661)
                     /locus_tag="VEQ16_08215"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HYP63857.1"
                     /translation="LGRLYRQHAPALRLYARQWPGNGEDHVHDAFLQLARQSPPPMRV
                     LPWLYRVVRNLAFAANRAAARRRRREQQASVPESWFAVADDPLHAKDLARLLATLVLE
                     LREVVVARIWGGLTFEEIAELIGSSLPTAHRRYQAALIELRERLTVDGHASSLLW"
BASE COUNT          302 a          535 c          520 g          304 t
ORIGIN      
        1 ttcggctccc ccggccgttc catgaaatcg agcacgcact ccagacactg attggcacag
       61 gcgatgccga ccagccgatt gatgaggaac ggtccgctgc cggcatgctg gctaaaggcc
      121 agtccggttt gaagccagtg cgccgcgccg gcaaagttgc cctcggccag ctccacgcgc
      181 gctttgagaa tgagaatcgg cacataggag cgcatcgtct gcgcgtcggg gagcaagatg
      241 tcgatcacgc tgccctggtc gaacgtgtag ttccactccg cctgtttccg cgtcgctccg
      301 agctcgagtt gtcgaaggac cgtatgccag gatttcagaa acttcctggc ttcatccaac
      361 gggatctggt cgatcggcag tttgttccat tttcttggcg tctcggcgag gatgcgccgg
      421 gatgcatcgt ttcgctcatg agccaggcgc aggtaaatcg gcacggcgtt tcctggcttg
      481 cgatccgagg ccagcgggaa gagccggtat ccaagggcag gcttcggctc cggctgcggc
      541 gtcaactcga gcgcgcgatc gacgccccat ttttcctccg cggcttgacc cgtggcggca
      601 gcagatgccg gctgtgttgg aatagcccca agcgcggctg ccgtcagggc cagaattaca
      661 aataccgcga gtgcggatct ttggcgcagc caattcattc gcgtaactcc ttggatagtg
      721 atggtttcaa aagggaacga atcacggatt gagcacatga tcgcgctggc cggcccacca
      781 gatagaccgg ctcggcgagg ccgggccctt cagcggatcc cccattgcca gcgtaggcca
      841 gtcctggctc tgtgccagtg cccgtgcggc agccaggtaa cttgtcggcg caggtgtttc
      901 gttcgcggga acgatgtctg gctgcggcac atccgccggc gccaccggac cgggtgtctg
      961 cctttgcagc tgggcggcca gttcctgtcg cacctgccgc tcttgcaaaa ggcccacacc
     1021 cagaaccaac gccgccagcg ccagacaacc cgacaggacc ggccagacca gccgtcccat
     1081 gcctggtcgc gccgaatccc taccggcagc aaaaagcatg ttgccggcat ccaggcccgc
     1141 ggtggacggt tgcagcgccg acagccgccg ttccagatca ttcaggtcac cagaggaggg
     1201 aggaagcgtg tccatcgact gttagccttt ctcttagttc gattagtgcc gcctggtagc
     1261 ggcggtgtgc ggtcgggaga gaggagccaa ttagctcggc gatctcctcg aaggtcagtc
     1321 cgccccaaat ccgggcaacg accacctcgc gcaattccaa aacaagcgta gccaggagcc
     1381 gggcgaggtc cttggcatgg agcgggtcgt ccgcgacggc gaaccaactc tccggtacac
     1441 tggcctgctg ttcgcgccgg cgccgccgcg ccgccgcccg gttggccgcg aatgcaagat
     1501 tgcggaccac tcggtacaac cagggcagta ctcgcatcgg cggcggtgac tgccgcgcca
     1561 actgcaggaa tgcatcgtgc acatgatctt cgccgttgcc gggccactgt cgcgcgtaca
     1621 gcctcagggc cggcgcatgt tgccggtaaa gccttcccag g
//
LOCUS       DASQCV010000542         2571 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2272136, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000542 DASQCV010000000
VERSION     DASQCV010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2272136"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(99..1388)
                     /locus_tag="VEQ16_08220"
     CDS             complement(99..1388)
                     /locus_tag="VEQ16_08220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014188102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYP63858.1"
                     /translation="MLDLIIRNANLPDGRTSIDIGIAAGRIEAVAPALAAEAAETIDA
                     TNRLVTPPFIDSHLHLDSTLSLGLPRLNRSGTLLEGIQLWGELKPHLTVEAIYERAKK
                     LCLWSMARGTLGIRSHVDICDDRLLAVEALVKLREELKPWLDIQLVAFPQDGYLRYPK
                     SAENLERAVSMGVDIIGGIPHFERTMEEGAESVKRLMRLAAERGLMVDMHCDESDDPL
                     SRHIETLAAETIRHGMGGRVTGSHLTSMHSMDNYYVSKLIPLIAEAGVSAIANPLINI
                     TLQGRHDTYPKRRGMTRVKELMAAGVTVGFGHDCVMDPWYPLGSHDMLQVASMGLHVG
                     QLTGTDEIKSCLAAVTENPAKILGLDGYGLTPGCHADLVILQAEDAFEAIRLSAERLF
                     VIRRGKILAEAPPRHSRLHLPHGPTPIDFTRAGLAAL"
     gene            1471..1887
                     /locus_tag="VEQ16_08225"
     CDS             1471..1887
                     /locus_tag="VEQ16_08225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63859.1"
                     /translation="MRWLIPLSMLALAACSLPGRQTFAPDPVPADVQSIAATKAFEGR
                     IPLVTVQPGTDDFAAPLKVAVGEALAIKPGASFEVRAVTPVQGTPGAQAEALAALEPL
                     ASEIAQAVAGDGVQPGHVALTAGNGGASTEILVLVK"
     gene            1884..>2571
                     /gene="pyrD"
                     /locus_tag="VEQ16_08230"
     CDS             1884..>2571
                     /gene="pyrD"
                     /locus_tag="VEQ16_08230"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010506842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase (quinone)"
                     /protein_id="HYP63860.1"
                     /translation="MIFAPPGLMPALRLLDPETGHNVSLRALRLGLVGRDSTPDDPIL
                     AVEAFGRSLRNPIGLAAGFDKNAVAVDALGRLGFGFVEAGTVTPRPQPGNPRPRLFRL
                     TEDAAVINRMGFNNAGLDVYLANLRRVDRARLVLGANVGINKEGADPERDYPALVKAV
                     SPFADYITINISSPNTPGLRDLQSEERLTAILSGISTERPVFVKIAPDLSEDGLEAVI
                     GVALRHGVKGL"
BASE COUNT          421 a          659 c         1000 g          491 t
ORIGIN      
        1 tgcagagagg tgatgacctg ccgtgtgatt gccattttgc gcctccttat cgttgcgctg
       61 tcagcgtagg gggcgggggc gaggctggca agtgacggtt agagggcagc aaggccggcg
      121 cgggtgaagt ctatgggggt cggcccgtgc ggcaggtgca ggcggctatg gcggggcggg
      181 gcttcggcga ggattttgcc gcggcggatg acgaagaggc gttcggcgga gaggcggatg
      241 gcttcgaagg cgtcttcggc ctgcaggatg acgaggtcag catggcagcc gggggtgagg
      301 ccgtagccat caaggcccag gattttcgcg gggttttccg tgacggcagc gaggcagctc
      361 ttgatttcgt ccgtgccggt gagctggccg acatgcaggc ccatggaggc gacctgaagc
      421 atgtcgtggc tgccgagcgg ataccagggg tccatcacgc aatcatggcc gaacccgacc
      481 gtgacacctg ccgccatcag ctccttcacg cgcgtcatgc cacggcgttt ggggtaggtg
      541 tcgtggcggc cttgcagggt gatgttgatg agcgggttgg cgatggcaga aacacctgcc
      601 tcggcgatga gggggatgag tttcgagacg tagtaattat ccatggaatg catggaagtg
      661 aggtgcgaac cggtgacgcg gccgcccatg ccgtggcgga tggtttcggc ggcgagtgtt
      721 tcgatatggc gggagagcgg gtcgtcggat tcgtcgcaat gcatgtccac catcagcccg
      781 cgctcggcgg cgaggcgcat gaggcgtttc acgctttccg caccctcttc catggtgcgc
      841 tcgaaatgcg ggatgccgcc gatgatatcg acgcccatgg aaacggcgcg ttcgagattt
      901 tcggcggatt ttgggtagcg caggtagccg tcctggggga aggcgacgag ctggatgtcg
      961 agccagggtt tcaactcttc gcggagtttg accagggctt cgacggcgag aaggcggtca
     1021 tcgcagatat cgacatggga acggatgcca agcgtgccgc gggccatgga ccagaggcat
     1081 aatttcttgg cgcgctcata gatggcctcg accgtgaggt gaggtttcag ctcgccccag
     1141 agttgaatgc cctcgagcag ggtaccggag cggttgaggc ggggcagtcc cagggaaagg
     1201 gtggaatcga gatgcaggtg agagtcgatg aaagggggcg tgaccaggcg gtttgtggcg
     1261 tcgatggtct cggcggcctc ggcggcgagg gcgggggcaa cggcctcgat gcggccggct
     1321 gcaatgccga tatcgatgct ggtccggccg tcggggaggt tggcgttgcg gatgatgagg
     1381 tcgagcatga ggtcccctta aggtgaaagc cgggccagca tgggccaggc ccaggttgcc
     1441 gcgcaagcgg gggatggcta aagcgggagc atgcgctggc tcatccccct ttccatgctt
     1501 gcccttgccg cctgctcctt gccggggcgc cagacttttg ccccggaccc ggtgccggcc
     1561 gatgtgcaga gcatcgccgc caccaaggcg ttcgaggggc ggattccctt ggtgacagtc
     1621 cagcctggga ccgacgattt tgctgccccg ttgaaggtgg cggtgggtga ggcgttggcg
     1681 atcaagccgg gcgcttcctt cgaggtaagg gcggtgacac cggtgcaagg cacgccaggg
     1741 gcgcaggcgg aggcgctggc ggcgctggag cctttggcaa gtgagattgc gcaggcggtg
     1801 gcgggcgatg gcgtgcagcc gggccatgtg gcgctgacgg cgggcaatgg cggggcgagc
     1861 acggaaatcc tcgttctcgt gaaatgattt ttgctcctcc tgggctgatg ccggcgctgc
     1921 ggctgctgga tcccgagact gggcataatg tttcgctccg ggcgttgcgg ctggggctgg
     1981 tggggcgtga cagcacaccg gatgatccga ttctggctgt ggaggcgttt gggcggtcct
     2041 tacgaaatcc gattgggctg gcggcggggt tcgacaagaa cgcagtggcg gtggatgctc
     2101 tggggcggct cgggttcggc ttcgtcgagg caggtacggt gacgccacgg ccgcagccgg
     2161 gaaatccaag gccgcgtttg ttccggctga ccgaggacgc ggcggtgatc aaccgcatgg
     2221 gcttcaataa tgcggggctg gatgtgtatc tcgccaatct gcggcgggtg gaccgggcgc
     2281 gtctggtgct gggggcgaat gtcggcatca ataaggaagg ggcggacccg gagagggatt
     2341 atccggcgct ggtaaaggcg gtttcgccgt tcgcggatta tatcaccatc aatatttcct
     2401 cgccgaatac gccggggctg cgggatttgc agtcggaaga gcggttgacg gcgattctct
     2461 ccgggatatc cactgagcgg ccagtgtttg tgaagatcgc gccggacctg tctgaggacg
     2521 ggctggaggc ggtgattggc gtggcgctgc ggcacggggt gaaagggctg a
//
LOCUS       DASQCV010000543         4256 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2769357, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000543 DASQCV010000000
VERSION     DASQCV010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4256)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4256)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4256
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2769357"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VEQ16_08235"
     CDS             <1..186
                     /locus_tag="VEQ16_08235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63861.1"
                     /translation="TPTEVVNDPHEKVRGLFQAVAVDGAGVFNVLVSPFHFDDSPLHL
                     RAGPPALGEMSRAEEVA"
     gene            183..1319
                     /locus_tag="VEQ16_08240"
     CDS             183..1319
                     /locus_tag="VEQ16_08240"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYP63862.1"
                     /translation="MKPLSGIRIADFTVHNAGPFCTNLLSQLGAEVMKIESAMRPDAF
                     RKPHPVYGRMGPATFDQVSSTKLSVRVNLKKPEGIALAKRIVGISDVAAESFRPGVIG
                     RLGLGYEALRAVKADIIMLSVSSCGQEGPDSHFAGYAPLFGAWGGLSDLTGYPDGPPV
                     EMRHVMDHTVGMNAAVAVMAALMQRCATGKGAHVDVAAREVASSLAGEALLLAAAGGV
                     PRRMGNAQEGRVPHGVYPAAGEDRWIAIAARSDAERATLARVIGGELSDAAIADWTRT
                     RDANAAAAALQAAGIAAHASWTTPEIAADPHLRERHAIVIVQEPDGKAREAVGVPMRL
                     SKGPEIGIHCGTPKLGEHEDYIYGELLGMNAAERRALEEAEVIY"
     gene            1349..2230
                     /locus_tag="VEQ16_08245"
     CDS             1349..2230
                     /locus_tag="VEQ16_08245"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008944358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63863.1"
                     /translation="MSEHAPVLGFIGLGVMGGGMCRNAVKKHSAPVHVFDMVPDAVAD
                     QVASGAVAAASVEEVAKQAEILFLSLPGGKQVASVCEDIAKHARPGTIVVDLSTTAVA
                     DARAVAAKLAEAGMLFADAPVARTRQAAIDGTLSIMVGASEELFAKVEPLLHYMGSDV
                     TRCGDVGCGQVVKLINNTLLFEQVAAIAEMMVVAERAGVTPAKLIEAVGLGSGNSFAL
                     QNHGKKAMAPRDFPEKAFPSHYALKDLGYTLDLAEQMGVDAKVGKLASSYYQAAIDAG
                     IGAKYFPAIIELVDRTQ"
     gene            2249..3190
                     /locus_tag="VEQ16_08250"
     CDS             2249..3190
                     /locus_tag="VEQ16_08250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007005309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HYP63864.1"
                     /translation="MQVHKLDYRVVTDGLEFPEGPIALADGSVLVVEIKGGRLIRVKP
                     DGTKEVAAELGGGPNGAAIGPDGAAYVCNNGGFNWITQDDGYKRPHGRADNYAGGSIQ
                     RVDLATGAITTLYTHCDGVPINGPNDIYFDAQGDMWFTDHGKTYGRQMDCGAVYHAAA
                     DGSWIRQAIFPMVTPNGCGLSPDEKTLYVSETETGRLWHWPVTGRGEVAKQPWPSPNG
                     GRLVGQATGYQRFDSMALEENGNICVATLVTGGVTVFSPQGEKLEYWEGPEPYCTNIC
                     FGGPDMKTAYITVSGTGLLIAVDWPRPGLKLLHQRNA"
     gene            3216..4049
                     /locus_tag="VEQ16_08255"
     CDS             3216..4049
                     /locus_tag="VEQ16_08255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014199246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC family dehydratase N-terminal
                     domain-containing protein"
                     /protein_id="HYP63865.1"
                     /translation="MSEFNDWVGRSQTVTDILEPARSNALSVALGGEGGSKAGDAMPL
                     LHHWLYFWDVKPPAGLGDDGHPAKGGFLPPVKLPRRMWAGGRLNFVKPLLLGSKVIRT
                     STITAVSEKTGRSGTLVFVTVRHELDAGEGVAISEEQDLVYRESAAGMTPAPVSSSAP
                     ATPWLEQVNPDPVLLFRYSALTMNGHRIHYDRPYAMDEESYPALVVHGPLQATLLMQL
                     AARNLDVPITGFDFRGQQPAFDGAPLYVCGEPTADGGNLWTQQGEAKNMVANVRTDNV
                     A"
BASE COUNT          797 a         1168 c         1441 g          850 t
ORIGIN      
        1 acgcccaccg aggtggtgaa cgacccgcat gagaaagtgc gcggtctgtt tcaggcagtt
       61 gccgtggacg gcgctggggt gttcaacgtg ctggtctcgc ctttccattt tgacgacagc
      121 ccgttgcatt tgcgtgccgg accaccggcg ctgggtgaga tgagtcgcgc ggaggaagtg
      181 gcatgaaacc gctttccgga attcgtattg ccgatttcac cgtgcataat gcagggccgt
      241 tctgcaccaa tctgctcagc cagcttggcg ctgaggtgat gaaaatcgaa agtgctatgc
      301 gcccggatgc gttccgcaag ccgcatccgg tttatggccg catggggccg gcgaccttcg
      361 accaggtgtc ctcgaccaag ctgtccgtgc gcgtgaacct caagaagccc gagggcattg
      421 ccttggcgaa gcgcatcgtg ggtatttctg acgtggcggc ggagagtttc cgtcccggcg
      481 tgattggccg ccttgggctg ggctatgaag cgctgcgcgc ggtgaaggcc gacatcatca
      541 tgctgtctgt ctcttcctgt ggacaggaag ggccggattc gcattttgcc ggctatgcgc
      601 ctttgtttgg cgcctggggc gggctgagcg acctgaccgg ctatcccgac gggccgccgg
      661 ttgagatgcg ccatgtcatg gaccatacgg tgggcatgaa tgcggcggtc gcggtgatgg
      721 cggcgctgat gcagcggtgc gcgacgggga agggcgcgca tgttgatgtc gcggcgcgcg
      781 aagtggcgtc ctctcttgcc ggcgaggcgt tgttgctggc ggcggcgggt ggcgtaccga
      841 ggcggatggg caatgcgcag gagggcaggg tgccgcatgg tgtttatccg gctgccggag
      901 aggatcgctg gattgccatt gccgcgcgca gcgatgccga gcgcgctacg ctggcgcggg
      961 tgatcggcgg agagctttcc gacgcggcga ttgcggattg gacccgcacg cgagatgcca
     1021 atgcggcggc cgccgcgttg caggccgccg gtattgctgc gcatgcgagc tggacgacac
     1081 cggaaatcgc cgctgacccg catttgcgcg agcgccacgc catcgtcatt gtgcaggaac
     1141 cagacggcaa ggcgcgcgaa gctgtcggcg tgccgatgcg cttgtcgaag gggccggaga
     1201 ttggcatcca ttgtggcacg ccaaagcttg gcgaacatga ggactacatc tatggcgaat
     1261 tgctggggat gaacgccgcc gagcgccggg cgctggaaga ggcggaagtg atctactgac
     1321 tggcgggcca tgaagaggaa gatgggatat gagtgagcac gcgcctgttc ttggatttat
     1381 cggccttggt gtgatgggcg gcggcatgtg ccgcaatgcc gtgaagaaac attccgcacc
     1441 ggtccatgtg ttcgatatgg tgcctgacgc tgtggctgac caggttgcct ctggcgcggt
     1501 cgccgccgct tccgtggaag aggtcgccaa gcaggcggaa atcctgtttt tgtcactgcc
     1561 tggcggcaag caggtggcgt ccgtttgcga ggatatcgcg aagcacgcca ggccgggcac
     1621 aatcgtggtg gatctttcaa ccacggccgt ggccgatgcg cgcgcggtgg ccgcgaaact
     1681 ggctgaagca ggcatgttgt tcgccgatgc gccagttgct cgcacacggc aggccgccat
     1741 cgatggcaca ctttccatca tggttggcgc gagcgaggaa ttattcgcga aagtcgagcc
     1801 attgctgcac tatatggggt ctgacgtgac acgctgcggc gacgtcggtt gcggccaagt
     1861 ggtcaagctc atcaataata ccttgctgtt cgagcaggtg gcggcgattg cggagatgat
     1921 ggttgttgcc gagcgcgctg gcgtgacgcc cgcgaagctg atcgaggctg tcgggcttgg
     1981 ctcgggtaat tcattcgctc ttcagaacca tggcaagaag gcgatggcgc cgcgtgattt
     2041 cccggaaaaa gccttccctt cgcattatgc gctgaaggat cttggttata cgctggatct
     2101 ggccgagcag atgggcgtgg atgccaaggt tggcaagctg gcctcgagct attaccaggc
     2161 ggcgattgat gccggcatcg gcgcaaaata ttttcccgcg atcatcgaac tagttgaccg
     2221 cacacaataa gaactggagc gaggaaacat gcaggtacac aagctggatt accgcgtcgt
     2281 cacggatggg cttgagtttc ccgaggggcc gattgccctg gccgatggtt cggtgctggt
     2341 ggtcgagatc aagggtggca ggttgatccg ggtgaagccg gatggcacca aagaggtggc
     2401 cgcggaacta ggcggcgggc cgaacggcgc ggcaattggc cctgatggtg ccgcttatgt
     2461 ttgcaataat ggcggattca actggatcac gcaggatgac ggctataagc gcccgcatgg
     2521 ccgtgccgat aattatgcgg gcggctcgat tcagcgtgtc gaccttgcca ccggcgccat
     2581 caccacgctc tatacgcatt gtgatggtgt gcccatcaac gggccgaacg atatttattt
     2641 cgacgcacag ggcgatatgt ggtttaccga ccatggcaag acttatgggc ggcagatgga
     2701 ttgcggcgcc gtctatcacg ctgcagcgga tggttcttgg attcgtcagg cgattttccc
     2761 catggtgacg cccaatggct gcggcctctc gcctgacgag aagacgctct atgtctccga
     2821 gaccgaaaca ggtcgccttt ggcattggcc ggtgacaggc cgcggcgagg tggcgaagca
     2881 gccctggccg tcgccgaatg gcggcagact ggtggggcag gcgactggct atcagcgttt
     2941 cgattccatg gcccttgagg aaaacggcaa tatctgcgtg gcgactctgg tgaccggcgg
     3001 agtcaccgtg ttttcgccgc aaggagaaaa actcgaatat tgggaagggc ccgagcctta
     3061 ttgcaccaat atctgcttcg gcgggccgga catgaagaca gcctacatca ccgtgtctgg
     3121 caccgggctg ctgattgcgg tggactggcc gcgtccgggg ctgaagctgc tgcaccagcg
     3181 gaacgcgtaa gcacacagac gataaggaaa acagcgtgag cgaattcaac gattgggtgg
     3241 gccgcagcca gactgtgacc gatattctcg aacccgcgcg cagtaatgcg ctgagtgtgg
     3301 cgctgggtgg cgaaggcggc tcgaaggcgg gggacgccat gccgctgctg caccattggc
     3361 tatatttctg ggacgtcaaa ccgcctgccg gccttggcga cgatggccat cccgccaaag
     3421 gcggattctt gccgcctgta aaactaccgc gtcgcatgtg ggccggcgga cgtctgaatt
     3481 ttgtcaagcc attgctcctg ggatcgaaag ttatccgcac ctccaccatc actgccgtgt
     3541 cggaaaaaac tggccgcagc gggacgctgg tgttcgtgac ggtgcggcat gagctggatg
     3601 ccggcgaagg cgttgcgatt tccgaagagc aagacctagt ctatcgcgag tcggcggcgg
     3661 gaatgacgcc tgcacccgtt tcatcatccg cgccggccac gccctggttg gagcaggtca
     3721 atcctgaccc ggtgctgctg ttccgctatt ccgcgcttac gatgaatggc catcgcatcc
     3781 attacgaccg tccctatgcg atggacgagg agtcctatcc ggcgcttgtt gtgcacggtc
     3841 cactgcaggc gactttgctc atgcaactgg cggcccggaa tcttgacgtg cccatcactg
     3901 gtttcgattt ccgcgggcag cagcccgcgt ttgatggcgc gccgctttat gtctgcggcg
     3961 agcccacggc agatggcgga aatctctgga cccagcaggg tgaagcaaaa aacatggtcg
     4021 caaacgtgcg cacggataac gttgcgtaaa ccggattgcg tgcttgcgga gcaaaactat
     4081 gactcaaaaa taccaactct tcatcgatgg caaatggcgg gatgcgtccg acggcgcgac
     4141 gatgccggcg atcaacccgt ataaccagga ggtgcacggg attgtacccg tggccagcgt
     4201 gagcgacgtt gaagacgcca tcgcagccgc gcgccgggcg ttcgacaatg tctgga
//
LOCUS       DASQCV010000544         1581 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1610610, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000544 DASQCV010000000
VERSION     DASQCV010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1610610"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..998)
                     /locus_tag="VEQ16_08260"
     CDS             complement(<1..998)
                     /locus_tag="VEQ16_08260"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63866.1"
                     /translation="MVQVKKPPGFIERHGLWTDEQRQKADEIKRRIEKDGVHLVRLAW
                     ADPHGASRAKAVTLPAFAAALTEGFTTTVATSTLDSAGARTFASFTRGGGMGLPEMTG
                     SPNLILVPDPNTFRVLPWAPGIAWMLCDEYFTSGAPFHFSPRHLLRRQTERLAAQGME
                     LMAGVEIEWYLLHAAEALTDAHVGTPGMRGRPIRTDPVEPGYVLHSETNLDAMQPVLS
                     ALVAAFEKIDLPLRSIENEFGPGQVECTFAARPALAAADEALLFRTATRQICRRMGYF
                     ATFMCRPALKGYYSSGWHLHQSLVETKTGRNLFMPERDGLHLSPLGSAFLGGLLKYA"
     gene            complement(1025..>1581)
                     /locus_tag="VEQ16_08265"
     CDS             complement(1025..>1581)
                     /locus_tag="VEQ16_08265"
                     /inference="COORDINATES: protein motif:HMM:NF017999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYP63867.1"
                     /translation="LDIEGIAPCMPGAELTEVLGNDTYKGRINVRLGPVALTFAGTVK
                     VEDIDNDRHTARVAAQGTDAKGRGGAQAASAFRLEPAGGGSKVLVHTNLNLSGAVAQY
                     GRGVGIIQATAAQLMNQFAKCLQDKLAQRHAAPAASTPAGTAAALTTPPPAAASTPAG
                     PPISGFSLLAKAVWSWITGLFRRS"
BASE COUNT          275 a          498 c          533 g          275 t
ORIGIN      
        1 gcgtatttga gcaggccgcc gagaaaagca gagcccagcg gcgacagatg aaggccgtcg
       61 cgttccggca tgaacaggtt gcgccccgtc ttggtctcga ccagcgactg gtgaagatgc
      121 catccgctgg aataatagcc cttcagcgcc gggcggcaca tgaaagtggc gaaatagccc
      181 atgcgacggc agatctggcg cgtggctgtg cggaacagga gagcctcatc agctgccgca
      241 agggcggggc gggccgcaaa ggtgcattcg acctggccag ggccgaactc attctcgatc
      301 gaacgcagcg gcaggtcgat tttttcgaaa gccgcgacga gagcggacag caccggctgc
      361 atcgcatcca gattggtctc ggaatgaagg acatagccgg gctcgaccgg atcggtacgg
      421 atcggccgcc cgcgcatgcc gggggtgccg acatgcgcgt cggtgagcgc ttccgccgcg
      481 tgcaggagat accactcgat ctccaccccc gccatgagct ccatgccctg ggctgccagg
      541 cgctcggttt gcctgcgcaa aaggtgccgg ggcgagaagt gaaacggcgc tccgctggtg
      601 aaatattcgt cgcacagcat ccaggcgata cccggagccc acggcagcac gcggaacgtg
      661 ttcggatcgg gaaccaggat gagattgggt gaccccgtca tttccggcag tcccatcccg
      721 ccgccgcggg tgaaagaggc aaatgtgcgc gcgcccgccg aatcaagcgt actggtggca
      781 acagtggtgg tgaatccttc agtcagcgcc gctgcgaatg cgggcagcgt caccgccttc
      841 gcgcgcgagg cgccgtgcgg atcggcccag gcaaggcgca cgagatgcac gccgtccttc
      901 tcgatccggc gctttatctc gtcggctttt tgtcgctgct cgtccgtcca caggccgtgc
      961 cgttcgatga aaccgggcgg cttttttacc tgcaccattc accccggcac tctgcgaccg
     1021 ccaatcatga acgtctgaac aagccggtaa tccagctcca gacagccttg gcgagaaggg
     1081 aaaatccgga aatcggcggt cctgctggtg tggatgcggc agcaggcggc ggtgtggtga
     1141 gcgccgctgc cgtgccggct ggagtcgagg ccgccggcgc cgcatgcctt tgcgcgagtt
     1201 tgtcctgcag gcatttggcg aactggttca tcagctgggc ggcggttgcc tggatgatgc
     1261 cgacgccgcg gccgtattgg gccacggctc ccgaaaggtt caggtttgtg tgcaccagta
     1321 ccttcgagcc gccgcccgcg ggctcgagcc ggaatgcgga agcagcctgc gcgccgccgc
     1381 ggcctttcgc gtcggtgcct tgcgcggcaa cgcgcgcggt gtgccggtca ttgtcgatgt
     1441 cctcgacctt cacggtgcca gcgaaggtca gggcgaccgg ccccagccgc acgttgatcc
     1501 tgcccttata ggtgtcgttg cccagcactt cggtgagctc ggcgccgggc atgcatggcg
     1561 cgatgccctc gatgtcgagc a
//
LOCUS       DASQCV010000545         2165 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2439536, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000545 DASQCV010000000
VERSION     DASQCV010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2439536"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1496
                     /locus_tag="VEQ16_08270"
     CDS             <1..1496
                     /locus_tag="VEQ16_08270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HYP63868.1"
                     /translation="AGGFLLVLAIVLPVMGALLSLTLGGRHAERIALILMPVGLTVAV
                     AIAAVVWRAHNVLQYFVGSWDPPLGVAFRADGLSAAMIVTAALLISGIGLFARAQFPA
                     QGGAKARAPLVFWTLLLMVWGALNAVFIGGDLFNLYVALELLTFAAVPLVSLDGRAET
                     FAAALRYLLFALLGSILYLLGTGLLYGAYGTLDIALLSGRIHAGPVAWAAVSLMTAGL
                     LAKAALYPLHLWLPPAHAGAPAPASAILSGLVVKAPFFLVVRLWFDVMPGLPEHAAAQ
                     VLGGLGAAAIIFGSILALRQARLKLLIAYSTVAQIGYLFLMFPLAVRPETGHPWATAA
                     WTGGVLQAVSHAFAKAAMFMAAGLIAEALGHDRIAGLAGIGRALPITVFAFGLGGLSL
                     MGLPPSGGFVAKAMLLTAAVAENQWWWAVVVLAGGVLAGGYVFLVLARALADAGEPLT
                     LLSTISRSRQAVVVVLALCAVLLGFVPLRPSELLQIGRPGLPIAVFR"
     gene            1508..>2165
                     /locus_tag="VEQ16_08275"
     CDS             1508..>2165
                     /locus_tag="VEQ16_08275"
                     /inference="COORDINATES: protein motif:HMM:NF012581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HYP63869.1"
                     /translation="MLLAAALAVPLSMLLACLSRRARARMPSLLALAPVPALAAALLV
                     PAGTTMVLPEPPFRMTLALDVPGAMLLGVAALLWIAAGAYASAYLRADPNAGRFAEWW
                     LLTLTGNLGVFIAADLVSFYLTFSVVSLAAYGLIVHDGTPGSQRAGVIYVALAVLGEA
                     FLLMAFVFMAAATPDSSLLIRDAVAALPSSPWRHTALALLILGFGLKIGLAPLHVWMP
                     L"
BASE COUNT          237 a          694 c          741 g          493 t
ORIGIN      
        1 cggctggcgg gttcctcctc gttctggcga tcgtcctgcc cgtcatgggt gcgctccttt
       61 cactgacact cggcgggcgg cacgcggaac gcatcgccct cattctgatg ccggtcggcc
      121 tcaccgtcgc ggttgcaata gccgctgtgg tctggcgcgc ccacaatgtg ctgcaatact
      181 ttgtcggcag ttgggatccg ccgcttggcg tggcctttcg agcagatggg ctttccgcgg
      241 cgatgatcgt gaccgcggcg ctgctgatat ccggaatcgg gctgttcgcg cgtgcgcagt
      301 ttccggcgca gggcggagcg aaagcgcgcg cgccgctggt attttggaca ttgctgctga
      361 tggtttgggg ggcgctcaat gccgtcttta tcggcggtga cctgttcaac ctttatgtcg
      421 ctctcgagct gctgactttc gctgcggtgc cgttggtttc tctggatggc cgcgcggaga
      481 cattcgcggc cgcgttgcgt tacctgctgt tcgcgctcct cggctcaatt ctctatctgc
      541 tcggcacggg gctgctctat ggcgcctacg gcactctcga tatcgctctg ctgtccggcc
      601 gcatccatgc gggaccggtg gcctgggccg cggtctcgct gatgacagcg gggctgttgg
      661 ccaaggccgc tctctacccg ctgcatcttt ggctgccgcc cgcccatgcc ggcgcacccg
      721 ccccggccag cgccatattg tcggggctgg tcgtcaaggc gccatttttc ctcgtcgtcc
      781 ggctgtggtt cgacgttatg cccggcttgc cagagcatgc agcggcgcag gtgctgggtg
      841 gcctgggcgc tgcggcaatc atcttcggca gcattctggc gttgcggcaa gcgaggctga
      901 aactgctgat cgcgtattcg acggtggcgc agatcggcta cctgttcctg atgttcccgc
      961 tcgctgtccg tcccgaaacg ggccatccgt gggctacggc ggcgtggact ggcggtgttc
     1021 ttcaagccgt ctcgcacgcc tttgccaaag ccgccatgtt tatggcggca gggctgatcg
     1081 ccgaggcgct cgggcacgac cggattgcag ggctcgccgg cattggccgg gctcttccga
     1141 tcactgtctt tgccttcggg ctcggcggcc tgtcactcat gggcctgccg cccagcggcg
     1201 gctttgtggc aaaagcgatg ctgctgacgg cggcggtcgc agagaaccaa tggtggtggg
     1261 ccgtggtcgt tctggcggga ggggtgctcg cgggcggtta cgtatttctg gtgctcgccc
     1321 gggcgctggc cgatgcgggc gagcccttga cgctgctctc aaccatatcc cggagccggc
     1381 aggcagtggt cgtggtcctg gcgctgtgtg cggtgctgct cggctttgtc ccgctgcggc
     1441 cttcggaact gctgcagatc ggccgtccgg ggttgcctat cgcggtcttc cggtgaccgg
     1501 cgcaggaatg ctgctcgctg ccgctctggc agtgccactc tcgatgctgt tggcctgtct
     1561 gtcgcggcgc gcgcgggccc gcatgccgtc tctgttggcc ttggcgccgg tccccgctct
     1621 agcggcagca ctgctggtcc ctgccggcac gacaatggtg ctgcccgagc cgccgtttcg
     1681 catgacattg gcgctcgacg tgcctggggc gatgctgctc ggggtcgcag cgctgctgtg
     1741 gatcgccgcc ggcgcctacg cttcggccta tctacgcgcc gacccgaatg ccgggcgctt
     1801 tgccgagtgg tggttgctga ccttgactgg caacctcggc gtcttcatcg ccgccgacct
     1861 ggtaagcttt tatttgacct tctcggtggt cagtctggcg gcttatggcc ttatcgtgca
     1921 tgacggcacg ccgggtagcc agcgggccgg cgtcatctat gtggcacttg ccgtgctggg
     1981 cgaggccttc ctgttgatgg ctttcgtgtt catggcggcg gccaccccag acagcagcct
     2041 cttgatccgc gacgcggtgg cggcgctgcc gagttcgccc tggcgccaca cggcgctggc
     2101 gcttctgatc ctgggattcg ggctgaagat cgggctcgcg ccgctgcatg tctggatgcc
     2161 gcttg
//
LOCUS       DASQCV010000546         2763 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_281546, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000546 DASQCV010000000
VERSION     DASQCV010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2763
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_281546"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1247)
                     /locus_tag="VEQ16_08280"
     CDS             complement(<1..1247)
                     /locus_tag="VEQ16_08280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007002470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HYP63870.1"
                     /translation="MPPAEMRDPVCGMSVDPATAKHRAEHAGHGYVFCSARCREKFTA
                     EPTRYIIASPQARTPITAAAGEVLWTCPMHQQIVRKEPGNCPICGMALEPMTPAAGEA
                     ENPELRNMTRRFWVGVALSLPLLAIAMAEHFNKAALDVLIAPRLLVWVQLILGTPAVL
                     WGGWPFFQRGWVSIISRRLNMFTLIALGTGVAYAYSLVAALAPGIFPASFRDPDGQVP
                     LYFEAAAVIVTLVLLGQVLELRARSQTSSAIRALLDLAPKRARRLRDDGSDEDIPLED
                     VIPGDRLRVRPGEKVPVDGVVLEGRSAVNESMITGEPVPAEKNPGDKVTGATVNTTGS
                     FVMRAERVGSDTLLAQIVAMVAEAQRSRAPIQKLVDTISAWFVPSVVITAVATFIAWS
                     ILGPAPAMGFGLVNAVAVLIIACP"
     gene            1467..2024
                     /locus_tag="VEQ16_08285"
     CDS             1467..2024
                     /locus_tag="VEQ16_08285"
                     /inference="COORDINATES: protein motif:HMM:NF019430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HYP63871.1"
                     /translation="MRHGKLCTSLIVALVLMATPALAQQSQDHEQHHPPGTPPAAAGP
                     GMPGGMMSGGGEMMNVMRMMSCEDGMSGMPMMAAMAGHVEGRLAFLKTELKITDAQLP
                     LWNAVADAIRANAKGMGAMAEGMMGNMQAAVLPDKLAAREKMLTARLEALRKLKAALD
                     PLYAALSDEQKKTADELIMGPMGMM"
     gene            2044..2361
                     /locus_tag="VEQ16_08290"
     CDS             2044..2361
                     /locus_tag="VEQ16_08290"
                     /inference="COORDINATES: protein motif:HMM:NF039498.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5676 family membrane protein"
                     /protein_id="HYP63872.1"
                     /translation="MSQMQSTFAARAPSGEGEIAFLSIKRLGLSLSTFFAISYVICIM
                     GYLIMPDFPVQHEALSIFLPGFRLLSWQSYFLGLIESFAWGWYIAAVFAPLYNFFGRH
                     VAH"
     gene            2371..2619
                     /locus_tag="VEQ16_08295"
     CDS             2371..2619
                     /locus_tag="VEQ16_08295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006414861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2933 domain-containing protein"
                     /protein_id="HYP63873.1"
                     /translation="MNHEQHEQPSWWRSSIGIVTCGFLIVAGFFLLTEHTAHVFGALP
                     WLLILACPLMHLFMHHGHHGGHGQGRQSNPDEEGEGRP"
BASE COUNT          528 a          829 c          896 g          510 t
ORIGIN      
        1 gggcacgcga tgatcagtac ggcgaccgcg ttgacgagcc cgaagcccat agccggcgcc
       61 gggcctaaaa tcgaccaggc gataaacgtc gcgacggcgg tgatcacgac ggagggcacg
      121 aaccacgccg agatcgtatc cacgagtttc tggatcggcg cgcgcgaccg ctgtgcttcc
      181 gccaccatgg cgacgatctg ggccagcaaa gtatcgctgc cgacccgttc ggcgcgcatg
      241 acgaaactgc ccgtcgtatt gaccgtggca ccggtcacct tgtcgccggg attcttctcg
      301 gccggcaccg gctcgccggt gatcatggat tcattgaccg cgctgcggcc ctcaagcacc
      361 acgccgtcga ccggcacttt ctcgcccggc cgcacgcgca ggcggtcgcc gggaataacg
      421 tcttcgagcg gaatgtcctc gtcgctgcca tcatcgcgca accggcgggc gcgtttcggc
      481 gcgagatcaa gcagggcgcg gatggcgctg ctggtctgcg aacgggcgcg aagttcgagc
      541 acctggccga gcagaaccag cgtgacgatg acggccgccg cctcgaaata aagtggcacc
      601 tgcccgtcag gatcgcggaa ggaggcagga aaaattcccg gcgccagcgc ggcgaccagg
      661 ctgtaggcgt aggcgacgcc ggtaccgagc gcgatcagcg tgaacatgtt gagccggcgg
      721 ctgatgatcg aaacccagcc gcgctgaaag aacggccagc cgccccacag caccgccggc
      781 gtgcccagga tcagctgtac ccagacaaga aggcgagggg cgatcagcac atcaagcgcc
      841 gccttgttga aatgctcggc catggcgatg gcgagcagcg gcagcgagag cgcgacaccg
      901 acccagaagc gccgcgtcat attgcgcaat tccggattct cggcttcgcc ggccgccggc
      961 gtcatcggct cgagcgccat gccgcagatc gggcaattgc ccggttcttt ccgcacgatc
     1021 tgctgatgca tcggacaggt ccacaggacc tcgccggcag cggccgtgat aggggttcgg
     1081 gcctgcgggg aagcgatgat gtagcgcgtc ggctcggccg tgaacttttc ccggcaacgg
     1141 gcgctgcaga aaacgtagcc gtgaccggca tgctcggcgc ggtgctttgc cgtggccgga
     1201 tcgacgctca ttccgcaaac gggatcgcgc atctcggcgg gcggcatggg agcgtggtgc
     1261 tgatggcggg ctagcggttc ggccatagtc atctgggtca gtccttacgc ggaggcttcc
     1321 aggctggaag gtttattttg ccaaaccttc cagcgaagga aggtttcctt tggctcaatt
     1381 tacctgggac aaatcgccgt acaatttgat ctgggtcaat tcatccggca accgcatcgg
     1441 gcataaatat taggtggagg cctcccatgc gtcacggcaa actttgcacc tcattgatcg
     1501 ttgccctggt tttgatggcg accccggcgc tcgcccagca atctcaggat cacgagcagc
     1561 accatccgcc agggacgccg ccggcggcgg caggcccggg gatgcccggg ggcatgatgt
     1621 cgggcggcgg cgagatgatg aacgtgatgc gcatgatgag ttgcgaggac ggcatgtcgg
     1681 gcatgccgat gatggccgcc atggccggcc atgtcgaagg ccggctggcg ttcctcaaga
     1741 ccgagctcaa gatcaccgac gcgcagctgc cgctatggaa cgcggtcgcc gacgcgatcc
     1801 gggctaacgc caaaggcatg ggcgcgatgg ccgagggaat gatgggaaac atgcaggcgg
     1861 cagtgctccc ggacaagctg gcggcgcggg aaaaaatgct gaccgcgcgt ctcgaggcgc
     1921 tgcgcaaact caaagcagcg cttgatccgc tctatgcggc gctcagcgac gaacagaaga
     1981 aaaccgccga cgagctgatc atgggtccaa tggggatgat gtagcggaat gggaggcgaa
     2041 atcatgagtc agatgcagag cacgttcgcg gcgcgggcgc cgagtggcga aggagagata
     2101 gcctttttaa gcattaagag gctgggtctt agcctcagta cgtttttcgc gatctcttac
     2161 gtgatttgca ttatggggta cctgataatg ccggatttcc ccgtgcagca tgaggcgctg
     2221 tcgatctttt tgccggggtt cagacttcta agttggcaaa gctatttcct tggcctcatc
     2281 gaaagctttg cctggggttg gtacatcgcc gcagtgttcg cgccccttta caatttcttc
     2341 ggccgtcacg ttgcgcactg agccagaacc atgaatcacg aacagcacga acaaccctcc
     2401 tggtggcgca gctcgatcgg gatcgtcacc tgcgggttcc ttattgtggc ggggttcttc
     2461 ttgctgacgg agcacacggc gcatgttttt ggcgcgctgc cctggctcct gatcctcgcc
     2521 tgtccgctca tgcacctctt tatgcaccat gggcatcatg gcggccacgg tcaggggcgg
     2581 cagtccaatc ccgatgagga aggggaggga aggccatgac gcatgatacc gcgccggcct
     2641 atggcctctg ggggctggtg atcatcaaca gcgcggtgtt cgtcattttc gctttcagct
     2701 ttacgaagcc gcaaaccagc cgcgactggc gttctttcag cgccttctca gccttcattg
     2761 tcg
//
LOCUS       DASQCV010000547         3786 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3267625, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000547 DASQCV010000000
VERSION     DASQCV010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3786
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3267625"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2662)
                     /locus_tag="VEQ16_08300"
     CDS             complement(<1..2662)
                     /locus_tag="VEQ16_08300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012554216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HYP63874.1"
                     /translation="MSIHAAITHRTSYKYDRPVILGPQTIRLRPAPYARTPIISYALQ
                     VSPKPHFLNWQQDPQGNYLARVVFPERVTSFEVTVDVVADMATINPFDFFLEEQAEHW
                     PFAYDEVLADELAPFRVINEPGPLLTGLIEDMRGKFNGQEPRVVDMLVEVNRVLHERI
                     AYVVRMEPGVYTPEETLSLAKGSCRDSAWTLVNLLRHLGYAARFVSGYLIQLTADVKA
                     IDGPSGPEADFTDLHAWAEVYLPGAGWVGLDATSGLFAGEGHIPLAATPSPQSAAPIS
                     GGFTAEDGTETEFDFHMEVRRVSETPRVTKPYTPQQWQDILARGAAVDRALLRNDVRL
                     TMGGEPTFVSATDHEGEEWNIEALGPTKRIYAGRLMRRLTPLWSKGAALTHNMGKHYP
                     GEQLPRWAIHAHWRADGEPVWLNPDLLASDDDRDNATADDTADFARALAERLQVDPDL
                     VNAAHEDIHYYLWREKRLPANVIVEDAKLADPLERARLAKVFGQGLASSAGSVLPLRR
                     VWQDGQRRWQSGKWFFRDDVMFLIPGDSPIGLRLPLESLPWAELSNIEQDFPLDPFAP
                     KSRLPKRDSMQRTREMEWGQGSIEGFRPVPQELPVVGREEPGIVRTALCVEARDGLIH
                     IFYPPLYDAADWLDLTAAIEETAAEFGRKVILEGYLPPEDERVLNFSITPDPGVIEVN
                     IHPASSWGQVVERTGELYEAAREVGLAAEKFMLDGHHVGTGGGNHVVMGGAAPADSPF
                     LRRPDLLKSMLGFWHNHPSLSFLFSGLFIGPSSQHPRIDEARDDAINELEIAFQQTSR
                     QNQTPPWLVDRLFRNILCDMTGNGHRTEFCIDKLYSPTGGSGRRGLVEFRAFEMPPHA
                     EMSAAQMLLMRSAIAAFWDRPYERSLVRWGT"
     gene            complement(2812..3108)
                     /locus_tag="VEQ16_08305"
     CDS             complement(2812..3108)
                     /locus_tag="VEQ16_08305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63875.1"
                     /translation="MLAVHFVLSFLAGALISNAIPHLTAGLRGEPFPTPFTTPRGIAP
                     SPPELNVVWGSANLFIGLLLFSHPVWLGFAIGFVVAGWFLAKNFGKVRANGFKP"
     gene            complement(3123..>3786)
                     /locus_tag="VEQ16_08310"
     CDS             complement(3123..>3786)
                     /locus_tag="VEQ16_08310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HYP63876.1"
                     /translation="ALGEADAAVCGGTGDWWRQFQYALPIIPRKTGSGRVYALTALIL
                     QAGPLFFCDTHVNVEPCAEELAEMTLMAAETVRHFGLTPKAALLSHSNFGASNSPSAK
                     KMRQALGLIHARDPDLEIDGEMHADAALVEQIRRHALPDSTLHGVANLLIFPNIDAAN
                     IAFNLVKAVGEAVTVGPILLGLAKPLHIAVPSTTARGIINLSAVAAMEASLSAAKPIT
                     KD"
BASE COUNT          731 a         1122 c         1280 g          653 t
ORIGIN      
        1 gggtgcccca gcgcaccaaa gaacgctcat agggacggtc ccagaaggcg gcgatggcgg
       61 aacgcatgag cagcatctgc gccgccgaca tttccgcatg cggcggcatc tcgaaggcgc
      121 ggaattccac cagcccgcgc cggccagatc caccggtggg ggaatagagt ttatcaatgc
      181 agaattccgt gcggtgcccg ttgccggtca tgtcgcacag aatgttgcgg aacaggcggt
      241 ccaccagcca gggcggggtc tggttctggc gcgaggtctg ctggaaggcg atttccagct
      301 cgttgatggc atcgtcacgg gcttcgtcaa tgcgcggatg ttgcgaagat gggccgatga
      361 agagaccgga gaagaggaag ctcagcgagg gatggttatg ccagaagccg agcatggatt
      421 tcagcagatc cggccggcgc aggaaggggc tgtccgccgg cgcggcgcca cccatcacca
      481 catggttgcc gccgccggtg ccgacatggt ggccatccag catgaatttt tccgcggcga
      541 ggccaacctc ccgtgccgcc tcgtacagct cgccggtgcg ctccaccacc tggccccagc
      601 ttgaggcggg atggatattc acctcgataa cgccggggtc aggcgtgatg gagaaattca
      661 gcacgcgctc atcctcgggc ggcagatagc cttccaggat cactttgcgg ccgaattcgg
      721 cggcggtttc ctcaatggcg gcagtgaggt cgagccagtc ggcggcatca tagagcggcg
      781 gatagaaaat atggatgagg ccgtcgcgcg cttccacgca aagtgctgtg cggacgatgc
      841 cgggctcctc gcgcccgacg acaggcagtt cctgcggcac ggggcggaag ccttcgatgc
      901 tcccctgccc ccactccatt tcgcgcgtgc gctgcatgga atcgcgcttg ggcagacggg
      961 atttaggcgc gaacgggtcg agtgggaaat cctgctcgat attggacaat tcagcccaag
     1021 gcaggctttc cagcggcaag cgcagaccga tgggggaatc gccggggatt aagaacatca
     1081 catcgtcgcg gaagaaccat ttgcccgatt gccagcgccg ctggccatcc tgccagacac
     1141 ggcgcagcgg cagcacggag ccggcactgg acgccaggcc ctggccaaaa actttggcca
     1201 agcgcgcgcg ctccagcgga tcggcaagct tggcgtcttc aacaatgaca ttcgccggca
     1261 ggcgtttctc gcgccagaga taataatgga tgtcctcatg ggcggcgttg actaggtccg
     1321 ggtcgacctg cagccgttca gccagggcgc gggcgaaatc cgccgtgtcg tcggcggtgg
     1381 cattgtcgcg gtcatcatcg gaggcgagaa ggtcggggtt gagccagacc ggctcgccat
     1441 cggcacgcca atgcgcatgg atggcccagc gcggcagttg ctcgccgggg taatgcttgc
     1501 ccatgttgtg ggtgagcgcc gcgcccttgc tccagagcgg ggtgagcctg cgcatcagcc
     1561 gcccggcata aatccgtttt gtcgggccca gcgcctcgat attccattcc tcgccctcat
     1621 ggtctgtggc ggaaacgaag gtgggctcgc cgcccatggt gaggcgcaca tcattgcgca
     1681 gcagcgcgcg gtccaccgcg gcgccgcggg ccaggatgtc ctgccattgt tgcggcgtgt
     1741 agggcttggt tacgcgcggc gtttcggaaa cgcggcgcac ttccatgtgg aaatcgaatt
     1801 ctgtctcggt accgtcttcc gccgtgaagc cgccggaaat gggtgcggcc gattgcggag
     1861 acggcgtggc ggcgagtggg atatggcctt caccggcgaa caggccggaa gtggcgtcca
     1921 gcccgaccca gccggcgccg ggcagataaa cctcggccca ggcgtgaaga tcggtgaaat
     1981 cggcctcggg accggacggg ccgtctatgg cttttacatc agcggtgagc tggatgagat
     2041 agccggagac gaagcgcgcc gcatagccga gatggcgcag tagattgacg agcgtccagg
     2101 cggaatcgcg gcaggagccc ttggcgaggc ttagcgtttc ctcgggcgtg tacacccccg
     2161 gctccatacg caccacatag gcgatgcgct catgcagcac gcggttgacc tcgaccagca
     2221 tgtcgaccac gcgtggctcc tggccattga atttgccgcg catgtcctcg atgagcccgg
     2281 tgagcagcgg gccgggctcg ttgatcacgc ggaaaggcgc cagctcatcg gccaagacct
     2341 cgtcataggc aaagggccaa tgctcggcct gctcttccag gaagaaatcg aacgggttga
     2401 tggtggccat gtccgccacc acgtcgacgg tcacctcgaa gctggtgaca cgctcgggga
     2461 agacgacgcg ggcgagataa ttgccctgcg gatcctgctg ccagttgagg aaatgcggtt
     2521 tgggcgagac ctgaagtgcg taggaaatga tgggggtgcg cgcataaggg gcggggcgca
     2581 ggcgaatggt ctgggggccc aggatcacgg gacggtcata cttatacgag gtgcggtgcg
     2641 taatcgcggc gtgaatcgac atgcaggctc ccttgcttcg caagtgcaaa gtcaacacgg
     2701 gattcagttt tttgcaacgc aataaaaaat ggcccagaga gggccctcaa aagaatgggt
     2761 tgtgcgtcgt ggctgctggg cgcgggtttc cacgcccggc atgttatgcg tttaaggctt
     2821 gaagccgttg gctctgacct tgccgaaatt cttggccagg aaccagcccg ccacgacgaa
     2881 gccgatggca aagccgagcc agaccggatg gctgaacagc agcagaccga taaacaggtt
     2941 agctgagccc cagaccacat tcagttccgg tggcgagggc gcgatgccgc gcggcgtggt
     3001 gaagggcgtt gggaaaggct cgccgcgcag cccggcggtg aggtgcggaa tcgcattgct
     3061 gatcaaagcg ccggcaagaa aactcagcac gaaatgaacg gcgagcatat ggcctccctg
     3121 gtttaatcct tggttatagg cttggcggcg ctgagggacg cctccatggc cgctacggcc
     3181 gacagattaa tgatgccacg tgcggtggtg cttggcacgg caatatgcag cggcttggcc
     3241 aggccgagca gaataggccc cactgtcacc gcctcgccca ccgcctttac caggttgaag
     3301 gcgatattcg cggcgtcgat attgggaaag atcagcagat tggcgacgcc gtgcagcgtg
     3361 gaatccggca gcgcatgacg gcggatctgc tccaccagcg cggcgtcggc atgcatttcg
     3421 ccgtcgatct ccaggtccgg gtccctggca tggatcagcc ccagcgcctg gcgcatcttc
     3481 ttggcgctgg gcgagttgga ggcgccgaaa ttggagtgcg agagcaaagc cgccttcggg
     3541 gtgaggccga aatgccgcac ggtctccgcc gccatcagcg tcatctccgc cagctcctcg
     3601 gcgcagggct ccacattcac atgggtgtcg cagaaaaaga gcgggccagc ctgcaaaatc
     3661 agcgcggtga gcgcatagac gcggcccgag ccggttttgc gcgggatgat gggcaaagcg
     3721 tactggaatt gccgccacca atcgcccgtg ccaccgcaaa cggcagcatc cgcctcgccc
     3781 agggcg
//
LOCUS       DASQCV010000548         4121 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_615630, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000548 DASQCV010000000
VERSION     DASQCV010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4121
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_615630"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1049)
                     /locus_tag="VEQ16_08315"
     CDS             complement(<1..1049)
                     /locus_tag="VEQ16_08315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease H3TH domain-containing
                     protein"
                     /protein_id="HYP63877.1"
                     /translation="MKLVLVDGSGYIFRAFHALPDMTRPDGVHVNAVFGFCNMMARLL
                     KEHTGTHIAVVFDAGRYTFRNRLYEAYKAHRPEAPPELVPQFALIREATRAFGLPSIE
                     LEDWEADDLIAAYAKAALEAGGEAVIVSSDKDLMQLLRPGVEMLDPMKNVAIGLAEVE
                     AKFGVTPDKVIEVQALIGDSTDNVPGVPGIGPKGAAQLIGEYGSLEAVLEAAPSMKPS
                     KRRDALIEHADKARISRELVILRDDAPLPAPLDELAVKKWDAAVLREFLVANNFKSLR
                     HRLGLEDSETDEAPVEVQAVAFGPYQRAESLDEVVAQARASGGVALSVQTDDPASLHG
                     NLVGLGLCAVAGKAV"
     gene            complement(1046..1231)
                     /locus_tag="VEQ16_08320"
     CDS             complement(1046..1231)
                     /locus_tag="VEQ16_08320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019460968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HYP63878.1"
                     /translation="MSAQTQPTEIVHVQTRTVSCDGGVGTLGHPRVYLRITDHQVTCP
                     YCSKIFVLEEGATDSGH"
     gene            1145..2266
                     /locus_tag="VEQ16_08325"
     CDS             1145..2266
                     /locus_tag="VEQ16_08325"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYP63879.1"
                     /translation="MAKRPDAAIAGDSTGLDVNNFGRLGLRAHESLPLRVKLRRILAW
                     LAAFPKLAPTLLPALALSACAPIPFGIPQSYPGHPIVTSGYFSLPDGAKQPYRLYPAQ
                     GQVKAVVLALHGYADSRDGWEMLASYLTPHGIEIYAPDLSSFGASKNRGHWPGTAVLV
                     DESRDEAEQLRQQYPGTKIYIMGESMGGAIGILAGASPNPPPVDGYILSAPAVWGGAS
                     MSPFYRETLRLAAFFEPGKRLTAHGIHVWASDNRAALIALGEDPLTIHEPRIDHVEGL
                     VTLMGQAHAACANFRQPALILYGGHDELIPQVAMRDCWRAIPADAPVTFAYYPPDYHL
                     IPRDLERATPDADILAFIEGRGLPSSAPSAATVFLAEGN"
     gene            complement(2385..2810)
                     /locus_tag="VEQ16_08330"
     CDS             complement(2385..2810)
                     /locus_tag="VEQ16_08330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="EipA family protein"
                     /protein_id="HYP63880.1"
                     /translation="MTAAMVAVGMMAVTAAPSMAQNPPSGTITFSGGGVAVGIGYSWG
                     SGVLTFKGKQYPFSVSGLSVVDVGAASMKGSGTVYNLKDVAYFSGNYTAVGAGATVAG
                     GASVTAMQNQHGVVIHLTSTTQGLKFNLSASGVSINLKQ"
     gene            3113..3466
                     /locus_tag="VEQ16_08335"
     CDS             3113..3466
                     /locus_tag="VEQ16_08335"
                     /inference="COORDINATES: protein motif:HMM:NF015858.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajG family lipoprotein"
                     /protein_id="HYP63881.1"
                     /translation="MMPSTRNSPRGFKLGDNGVTLNIDVVDFYNDFHPGFFSADAIAT
                     VAFNVEVGAPGNHIVFSKYYSGTGDDPNIQLMGGDNARDALVKAFQEAVASAVEDPAF
                     IKGLVAAGAAPAPGA"
     gene            complement(3719..4084)
                     /locus_tag="VEQ16_08340"
     CDS             complement(3719..4084)
                     /locus_tag="VEQ16_08340"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HYP63882.1"
                     /translation="MPMIRSIAMPADANPNGDIFGGWLMSQMDLAAGNLAARVAHGRC
                     VTVAVDAMSFIRPVKIGDEVTVYCELISTGRTSLNIAVEAWRRDRSEMEDQQVTKAVF
                     KFVAIDAEGRPRPVKPAAA"
BASE COUNT          787 a         1474 c         1126 g          734 t
ORIGIN      
        1 tacaccgcct tgcccgccac cgcgcacaag cccagcccca ccagattgcc atgcagcgag
       61 gccggatcat ccgtctgcac cgaaagcgcc acccccccgc tcgcccgcgc ctgcgcgacc
      121 acctcatcca gcgactccgc ccgctggtaa ggcccgaacg caaccgcctg cacctccacg
      181 ggcgcctcgt cggtctcgct gtcctccagc cccagcctgt gcctgaggct cttgaaatta
      241 ttggcgacaa gaaactcccg cagcaccgcc gcgtcccatt tcttcaccgc cagctcgtcc
      301 aacggcgccg gcagtggcgc atcgtcgcgc aaaatcacca gttcgcgcga aatccgcgcc
      361 ttgtccgcat gctcgatcag cgcatcccgc cgtttcgagg gcttcatgga cggcgccgcc
      421 tccagcaccg cctccagcga gccatattcg ccaatcagct gcgccgcccc cttcggccca
      481 atccccggca cacccggcac attatcggtg gaatccccga tcagcgcctg cacctcgatc
      541 accttgtccg gcgtcacccc aaacttggct tccacctcgg ccaagccaat tgccacattc
      601 ttcatcgggt cgagcatttc cacgcccggc cgcaaaagct gcatgaggtc cttgtcggac
      661 gagacaatca ccgcctcgcc cccggcctcc agcgccgcct tggcataggc ggcaatcaga
      721 tcatccgcct cccaatcctc cagctcgatg gacggcagcc cgaacgccct ggtcgcctca
      781 cgtatcagcg cgaattgcgg caccagctcc ggcggcgcct ccggccggtg cgccttatag
      841 gcctcgtaga gccggttacg gaacgtatag cgcccggcat cgaacaccac ggcaatatgc
      901 gtgcccgtat gctccttcag cagccgcgcc atcatgttgc agaagccgaa cacggcgttc
      961 acatgcaccc catccggccg cgtcatgtcc ggcagcgcat ggaaggcccg gaaaatatag
     1021 cccgagccgt cgaccaggac gagcttcaat gccccgaatc cgtggcaccc tcttccagga
     1081 cgaagatttt cgaacaatat gggcaggtga cctgatggtc cgtgattcgc agatacacac
     1141 gcggatggcc aagcgtcccg acgccgccat cgcaggagac agtacgggtt tggacgtgaa
     1201 caatttcggt cggttgggtc tgcgcgctca tgaatccctg cctctaaggg taaaactgcg
     1261 gcgcatctta gcgtggcttg ccgcgtttcc caagctggct cccacactgc tcccggcgct
     1321 ggccctctcg gcctgcgccc ccatcccgtt cggcatcccc cagtcctatc ccggccatcc
     1381 catcgtcacc agcggctatt tctcgctccc ggacggcgcc aaacagccct accgcctcta
     1441 tcccgcgcaa gggcaggtga aagccgtggt cctggccctg cacggctacg cggacagccg
     1501 cgacggttgg gaaatgctgg cctcctatct caccccgcac gggattgaaa tctacgcccc
     1561 cgacctctcc tccttcggcg ccagcaagaa ccgcggccac tggcccggca cggcggtcct
     1621 agtcgacgaa tcccgcgatg aggccgagca gctgcgccag caatacccgg ggacaaaaat
     1681 ctacatcatg ggcgagagca tgggcggcgc catcggcatt ctggcgggag cgtcaccaaa
     1741 cccgcccccg gtggacggct atattctctc tgcccccgcc gtctggggcg gcgccagcat
     1801 gagccccttc taccgcgaga ccctgcgcct cgccgccttc ttcgaacccg gcaagcgcct
     1861 caccgcccac ggcatccatg tctgggcctc ggacaacagg gccgccctca tcgccctcgg
     1921 cgaggatccg ctcaccatcc acgagccgcg aatcgaccat gtcgagggcc tcgtcaccct
     1981 catgggccag gcgcacgccg cctgcgccaa tttccgccag cccgccctca tcctctatgg
     2041 cgggcatgac gagttgatcc cgcaagtagc gatgcgcgac tgctggcgcg ccatccccgc
     2101 ggatgccccc gtcactttcg cctattaccc gcccgactac cacctcatcc cccgcgacct
     2161 cgaacgcgcc acgccggatg cggatattct cgccttcatc gagggcagag ggctgccctc
     2221 atcggcgccc agcgcggcca ccgtgtttct ggcggaagga aattagaggc tgtttcacaa
     2281 gtcgctctga cggccgccag agtagacttg tgaaacagcc tcttggtatc cgggccggtg
     2341 acccaccgcc atgacaatca tggcggtgaa gccgggtaac ctgcctattg cttcagattg
     2401 atcgagacgc cagaggcgga aagattgaac ttgagcccct gagtcgtcga ggtaagatgg
     2461 atgacgacgc catgctggtt ctgcatcgcc gtgaccgagg cgccgccggc aacagtggcg
     2521 ccagcgccca cagccgtata attaccagaa aaataagcaa catctttgag gttataaacg
     2581 gtcccggagc ctttcatgct cgctgcccca acatccacca cgctcagccc actcacggag
     2641 aaaggatatt gcttgccctt gaaggtaagc acaccggacc cccagctata accgatacca
     2701 acggcaacgc ccccgccgga gaatgtgatc gtgccggagg gcgggttctg cgccatgctc
     2761 ggcgcagctg tgacagccat catgccaact gcaaccatcg ctgcggtcat tccactaaaa
     2821 cgcatgtgta tctcctggtt tcaatgttgg tcggcggttt ccaaaggggc gggctctaca
     2881 gataaggaag ccggaaggaa cccttggcgc agaaacccgt acgatatttg agattttcac
     2941 gtctttttct gcctcaaccc gcgaacacga tacttacacg ggatgaacct cggagatgtc
     3001 gtgcaataaa cccgtgttac aactggaaca tgtgatagat ttccagagtt taattttcgg
     3061 cgcgccaacg ccgggccgat cgtcgccagc aataacattc cgggcacggt gcatgatgcc
     3121 ttcaaccagg aactctccgc gcggcttcaa gctcggcgat aacggtgtga cgctgaacat
     3181 cgacgtggtg gatttctata atgatttcca tcccggtttc ttctccgccg acgccatcgc
     3241 caccgtcgcc ttcaatgtcg aggtcggggc gccgggcaac catatcgtgt tcagcaaata
     3301 ttattccggc accggcgacg atcccaacat ccagctcatg ggtggcgaca atgcgcgcga
     3361 cgcgctggtc aaggcgttcc aggaagctgt cgccagcgcg gtcgaagacc cggcctttat
     3421 caagggtctc gtcgcggcgg gcgccgcccc ggcgccgggc gcgtgagcca accccgtcac
     3481 ctggcggccc tggccctgct cctggcgctg gcaaggccct gcgggtcggc acccaagtca
     3541 cactggtaac aaccggcagc gaccagcaca tcgtgccgcg ctgagaggct gtttgagaaa
     3601 cctgcaatgg ggaatgccca gtcttggaaa gcaagaaagg ccagggctct gccgtcgtgc
     3661 ggacgcacgc cttcggcgtc caggggcgga gcccctggcc ttacttactt ccaaagcctc
     3721 aggccgctgc cggcttcacc ggccgtggcc ttccctcggc atcgatggcg acgaatttga
     3781 acaccgcctt cgtcacctgc tggtcttcca tttccgagcg atcgcgccgc caggcctcaa
     3841 cggcgatgtt cagcgaagtg cgtcctgtgg agattagctc gcaatacacc gtcacctcat
     3901 cgccgatctt caccgggcgg atgaagctca tcgcgtccac cgccacggtc acgcagcgcc
     3961 catgcgcgac tcgcgcggca agattccccg ccgccaggtc catctggctc atcagccagc
     4021 cgccgaaaat atccccattg ggattggcat cggccggcat ggcaatggag cggatcatcg
     4081 gcatgcgagc ggggggcttc gcgccctcgc tcaccttaga g
//
LOCUS       DASQCV010000549         3565 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2108243, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000549 DASQCV010000000
VERSION     DASQCV010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3565
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2108243"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VEQ16_08345"
     CDS             complement(<1..185)
                     /locus_tag="VEQ16_08345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63883.1"
                     /translation="MLKPRSVLLASVCLLPAMLAAPSPRGAAWAQTAPGGAGAIPQGG
                     TIAAINVTGNRRIETSTV"
     gene            complement(293..1369)
                     /gene="rseP"
                     /locus_tag="VEQ16_08350"
     CDS             complement(293..1369)
                     /gene="rseP"
                     /locus_tag="VEQ16_08350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HYP63884.1"
                     /translation="MLHALTPILGFVVCIGLLIFFHELGHYAAARSQGVRVEVFSLGF
                     GPALLKYKARSGTVWQVSALPLGGYVKMQGWGDSEDTALPEPGSFAGASLSSKAVIVA
                     AGPLANLALAVVLYAFLFMTAGQPTTPAVFASIEAKSAAAAAHFEPGDKVLAIGGTNV
                     RDFAQLQQIVTENPNSELDFTILRDGHDFTQSVKVGATSADGESIGHLGVTAAPVFTK
                     LGPLAAIGAAFHQTGAVIANWGTQMGQLIVEHKGLSDLSGPIGIAQVTGQVAAMGWMP
                     LVDLLAFLSINLGLVNLIPIPILDGGHLLFYAWEAVARRKVSEQWREIGLRLGAALIL
                     TLFLVTTFNDLTRIGVVSWLTHLL"
     gene            complement(1369..2529)
                     /gene="dxr"
                     /locus_tag="VEQ16_08355"
     CDS             complement(1369..2529)
                     /gene="dxr"
                     /locus_tag="VEQ16_08355"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003618073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HYP63885.1"
                     /translation="MAVKRITILGSTGSVGTQTLDLIAENPEAYEVCALVGGRNVALL
                     AEQAKQFRPAITVISDEALLPALREALTGENLATAGGRDAVLEAAGRPVDWTMSAITG
                     VAGLEPTLAAINHGGSIAFACKEALVSAGDVFLRAVEAAGATLLPVDSEHNAIFQAMA
                     DGNGRQVEKIILTASGGPFRTHSLDEMHGITREAALRHPVWSMGAKISIDSATMFNKG
                     LEVIEAARLFGLTTERIEVLVHPQSIIHGMVCYADGSVLAQLGSPDMRIPIAHTLAWP
                     ARIGTQAPRLDLATAARLEFFAPDEERFPALRLAREALCAGQGAPTVLNAANEVAVAA
                     FLDRRIGFLDIAHIVESVMARLGAPVVDDLASVLAVDEQARALAGALTTKAA"
     gene            complement(2520..3353)
                     /locus_tag="VEQ16_08360"
     CDS             complement(2520..3353)
                     /locus_tag="VEQ16_08360"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007002766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HYP63886.1"
                     /translation="MRQGSGVSVRALSDVAPKQADPRWSDLRLRVASALVLGPVAVFC
                     VWQGGWAWRVFLLVAMAGLGGEWGRLAGLKHPYLLGFILGLVWFCAVLFGPVGGLLGL
                     VLFWLAVRLHWGQFAGFGVPYAGLGGLSLLWLRGQAEGLADTIFLVMVVWGTDIGAYL
                     AGRLIGGPKLAPRISPGKTWAGSIGGLLIAASVGSLLAGLLQGAWVTAFAAGALLSFV
                     AQAGDLLESAIKRKLGVKDSGRTIPGHGGLFDRLDGFLAAAPVAAMLALCVQGGVALW
                     R"
     gene            complement(3313..>3565)
                     /locus_tag="VEQ16_08365"
     CDS             complement(3313..>3565)
                     /locus_tag="VEQ16_08365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006116355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="undecaprenyl diphosphate synthase family
                     protein"
                     /protein_id="HYP63887.1"
                     /translation="GIPAEELTEQKFSHLLFTDGIPDPDLLIRTSGERRISNFLLWQL
                     AYAEMIFTPVLWPDFGATEFAEALEDYASRERRFGARPV"
BASE COUNT          761 a         1240 c         1052 g          512 t
ORIGIN      
        1 acggtcgagg tctcgatgcg gcgattgccc gtgacattga tggcggcaat ggtgccaccc
       61 tgggggatgg cacccgcgcc tcccggcgcg gtctgcgccc aggcggcgcc gcgcggcgat
      121 ggggccgcca gcatcgccgg cagcaggcaa acggacgcca gaaggacgga gcgcggctta
      181 agcaatcgat atctcccaac ccaattagaa tcccccccgc tggtgctcgc ggagtcccgt
      241 cgcgaggcgt ttggcacggg ccaagtcacc gggcaaggtg ccgtcttgtt ttctagagta
      301 aatgtgtgag ccaggagacc acaccgatcc gcgtcagatc gttgaaggtg gtcaccagga
      361 acaaggtgag gatgagcgcc gctcccagcc gcagcccgat ctcacgccac tgctcggaaa
      421 ccttgcggcg cgccaccgcc tcccaggcat agaacagcag atgcccgcca tcgaggatgg
      481 ggatgggaat gagattgacg agaccgagat taatggaaag gaaggccagc aggtcgacga
      541 gcggcatcca gcccatggcc gccacctggc ctgtcacctg ggcgatgccg atcgggcccg
      601 aaagatctga aagcccctta tgctcgacga tgagctggcc catctgtgtg ccccaattgg
      661 cgatgaccgc gcccgtctgg tggaaggcgg cgccaatggc agcgagcggc cccaatttgg
      721 tgaagaccgg cgccgcggtg acgccgagat ggccaatgct ctcgccatcc gcgctggtgg
      781 cacccacctt caccgactgg gtgaagtcat gcccatcccg caaaatcgtg aaatccagct
      841 cggaattggg attttccgtc acaatttgct gcaattgggc aaagtcgcgc acattcgtgc
      901 cgccaatggc cagcaccttg tcgccgggct cgaaatgcgc cgccgcggcg gcggacttgg
      961 cctcgatgct ggcgaacacg gccggcgtgg tgggctgccc cgccgtcatg aacagaaagg
     1021 cataaagcac caccgccagc gccagattgg ccagcggccc ggccgcgaca atgacggctt
     1081 tcgaactcag cgacgccccg gcgaaagagc caggctcggg cagcgccgta tcctcgctat
     1141 ccccccagcc ttgcatcttt acataaccgc cgagcggcaa agctgagacc tgccacacgg
     1201 taccggagcg cgccttgtat ttcagcaaag ccgggccaaa gccgagcgaa aacacctcca
     1261 ccctcacgcc ctgcgagcgc gcggccgcgt aatggcccag ctcatggaag aaaatgagca
     1321 ggccgataca gaccacaaaa ccgaggatgg gggtgagagc gtgcagcatc aggcggcctt
     1381 tgttgtcagc gcgccggcca gtgcgcgcgc ctgttcatcc accgccagca cggacgccag
     1441 atcatccacc accggcgcgc cgagccgtgc catcaccgat tcgacgatat gggcgatatc
     1501 gagaaacccg atcctccggt ccaggaaggc ggccaccgcc acctcattgg cggcattgag
     1561 cacggtcggc gcgccctgtc cggcgcacag cgcctcgcgc gccaggcgca aggccgggaa
     1621 acgctcctca tcgggggcaa aaaattccag cctcgcggca gtggccaggt cgagccgcgg
     1681 cgcctgcgtg ccgatgcgcg ccggccaggc cagcgtatgc gcgatgggaa tgcgcatatc
     1741 cggcgagcca agctgcgcca gcaccgagcc atcggcgtag cagaccatgc catggatgat
     1801 ggattgcgga tgcaccagca cctcgatccg ctcggtcgtc agcccaaaaa gtcttgcagc
     1861 ctcaataacc tccaggcctt tattaaacat cgtcgcggaa tcgatcgaga tcttcgcgcc
     1921 catcgaccac actggatgcc gcaatgccgc ctcacgcgtg atgccatgca tctcatcgag
     1981 actatgggta cggaacggcc cgccggaggc agtgagaatg atcttctcca cctgcctgcc
     2041 attgccgtcc gccatggcct ggaagatggc attatgctcg gaatccaccg gcagcagcgt
     2101 cgcccccgct gcctctacgg cgcgcaggaa cacatcaccc gccgaaacca gcgcctcctt
     2161 gcaggcaaaa gcgatggaac cgccatgatt gatggcagcc aaagtcggct ccagcccggc
     2221 cacgccggta atggcggaca tggtccagtc cacaggccgc cccgccgcct ccagcacggc
     2281 atcgcgcccg ccagcggtgg cgagattctc gcccgtcagc gcctcgcgca aagccggcag
     2341 cagggcctca tcggaaatca ccgtgatggc ggggcggaat tgtttcgcct gctcggcaag
     2401 aagcgccaca ttgcgcccgc caacgagtgc gcaaacctca taggcttccg ggttttctgc
     2461 tataagatca agcgtctgcg tgccaacgct gccagtggag ccgaggattg ttattctttt
     2521 taccgccata gggctacacc tccttgcacg cataatgcca gcatcgccgc caccggggca
     2581 gccgccagga acccgtcgag ccggtcgaac aacccgccat gacctgggat ggtccggccg
     2641 gaatccttaa cccccagttt gcgcttgatc gcgctttcca gcaaatcccc cgcctgggcg
     2701 acaaaactga gtagcgcgcc ggcggcgaaa gcggtcaccc aggcgccctg cagcagcccc
     2761 gccagcagac tgcccacaga agcggcaatc agcagcccgc caatcgagcc ggcccaggtc
     2821 ttgcccggcg aaatgcgcgg cgccagcttc ggcccgccaa tcagccttcc ggccagatag
     2881 gcgccgatat ccgtgcccca caccaccatg acgaggaaaa tcgtatccgc cagcccttcc
     2941 gcctgtcccc gcagccagag cagcgaaagc ccgcccagcc ccgcataggg cacgccgaac
     3001 ccggcaaatt gcccccaatg tagcctgacg gcgagccaga acagaaccag ccccagcagc
     3061 ccgcccacag ggccgaacaa aaccgcgcaa aaccacacca gcccaaggat gaagccaagc
     3121 agataaggat gcttcagccc ggcaagccgt ccccattccc cgcccagccc agccatggca
     3181 acgagcagga acacacgcca ggcccagccg ccctgccaca cgcagaatac cgccacaggc
     3241 cccagcacaa gggccgaagc aacgcggagg cgcaaatccg accagcgcgg atcagcttgc
     3301 ttgggcgcga cgtcagacag ggcgcgcacc gaaacgccgc tcccttgacg cataatcctc
     3361 cagcgcttcg gcaaattccg tagcaccgaa atccggccac agcaccggcg tgaaaatcat
     3421 ctcggcatag gccagctgcc agagcaggaa attggaaatg cgccgctcgc ccgaagtgcg
     3481 gatcagcagg tcagggtcgg gaatcccatc ggtaaagagc aggtgcgaaa atttctgctc
     3541 cgtcagctcc tcagccggaa tgcct
//
LOCUS       DASQCV010000550         3287 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_450107, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000550 DASQCV010000000
VERSION     DASQCV010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3287
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450107"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            692..1144
                     /locus_tag="VEQ16_08370"
     CDS             692..1144
                     /locus_tag="VEQ16_08370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63888.1"
                     /translation="MAAAVLFAASFSGSASHAQSGPFAALAGSWHGGGTVSLDDGSTE
                     RIRCRATYAVAGPSMQMTLTCASDAYKFNLQSNVVSEGGAISGTWSESSRGINGTLQG
                     RGGGGNFQVTASSGGFNASISLTTRGNKQSVVMRADSQFRGASIALSR"
     gene            complement(1222..1422)
                     /locus_tag="VEQ16_08375"
     CDS             complement(1222..1422)
                     /locus_tag="VEQ16_08375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63889.1"
                     /translation="MTNRSTSADFVTAFATGWPEKEPHIMVLSLTTHKGVQDFALTKD
                     QALLIAKTMNETAVRLATPKPS"
     gene            complement(1433..1834)
                     /locus_tag="VEQ16_08380"
     CDS             complement(1433..1834)
                     /locus_tag="VEQ16_08380"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HYP63890.1"
                     /translation="MRILQPAEWPKPRGFSHGVELDGPGRWIVLAGQTGGDGKGDYAP
                     DLAAQVGSALRRIVKLLAEAGAGPEHIVRLNWYLTSRSEYEAAGAGIGAAWKETLGRN
                     FPPSTLLYIDGLVDVRAKVEIEVTAFIPKAA"
     gene            1992..3242
                     /locus_tag="VEQ16_08385"
     CDS             1992..3242
                     /locus_tag="VEQ16_08385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012567323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYP63891.1"
                     /translation="MDTLKVRDAADVEAVVRAAIAGEQPLEVIGHGSKRLIGQPMATN
                     AVLDLSALNAVTSYEPNELIITVEAGAPLADVSSLIDSKNQQFAFEPVDTTALLGGSG
                     RGTIGGMIGAGLAGPRRIRAGGVRDHLLGAHAVSGFGDSFKTGGKVVKNVTGYDLCKL
                     LAGSWGTLAVMTEVTLKVMPRPESERTLVLRGLDDLAANRAMTMALGSPFDVSGAAHL
                     PASALRPEAGGLDRLNAPREAATLLRLEGTAASASHRAASLAKLLAPFGAAATLEDTA
                     SASAWISVRDAAPFAAAGALGAWPVWRIVCPPAAGGALGQALARESGGDVIYDWGGGL
                     IWAALPPKPDAQAALVRQRVGAAAGHATLLRASDEVRRRVDVFHPQAGGVAALEERVR
                     SSFDPKAILNRGRLRRGQVGGEAA"
BASE COUNT          564 a         1036 c         1090 g          597 t
ORIGIN      
        1 cgacccaggc gccgagcctc ccgccaacct gaatctccgc gcctgcatgc gcggacggct
       61 gatgtccaca gcaagtccaa cttatccaca acaaccgctg gtggagggaa ttgtccgcca
      121 agcggcgaat ctctcacatt aaccatcgaa gagaacactt tgagttccag ggcgggaacc
      181 ggaggcacgg ctatgtgtct gaaacaaaag gaacaatcag cgctgctgcg gtgcggcaaa
      241 ctttggacac atttccttca aataagctgg accatcacac acagctgagg atagtgattc
      301 atgcgccccg atcgcattgc taaagtattg tttgcttgtg cctttgtcgg cttggcctcg
      361 cctgccgcct tcgcccagac accatatgac ggcctctggc atgttacgat cgtgaccaag
      421 accggtagct gtgagcccac agcaagctcg accctgaccg tcaccgacgg taagatttcc
      481 gcggctggcg ccagcgtctc cggaagcatc ggacatgagg gccttgtgcg ggtctcaatc
      541 aatggcgcat atgccaacgg acaattgagt ggcaataccg gatcggggaa gtggaatggg
      601 gcatcagcag gcataccttg cagcggtcgc tgggaagcat cgcggcaata acgcgacaaa
      661 cgaacgtcta accatgcccc ggcggctgct gatggcggcc gccgttttat ttgcggcctc
      721 cttctccggc tcggccagcc acgcgcaatc gggaccgttt gcggcactgg ccgggagctg
      781 gcatggcggc ggcaccgtca gccttgacga cggctcgacc gagcgcatcc gctgccgcgc
      841 cacctacgcg gtcgccgggc cctccatgca aatgaccctg acttgcgcca gcgatgccta
      901 caaattcaat ctgcagagca atgtcgtctc cgaaggcggc gcgatctccg ggacctggag
      961 cgaaagcagc cgcggcatca atggaacgtt gcagggccgt ggcggtggag gcaatttcca
     1021 ggtgaccgcg agctcgggcg gcttcaacgc cagcatctcg ctgacgacgc gcgggaacaa
     1081 gcagtcggtc gtcatgcggg ccgacagcca gttccgcggc gcctcgatcg cgctgtcgcg
     1141 ttaatcaagg caccatccag aggatcacga tccagaggat ggttaggatc agagaataaa
     1201 ggctcgcggc cgagcgcgaa gtcagctcgg cttcggcgtg gcgagccgga ccgcggtttc
     1261 gttcatggtc ttggcgatca gcagcgcctg atccttggtc agcgcgaaat cctgcacgcc
     1321 cttatgggtg gtcagcgaca gcaccatgat gtggggctcc ttctcgggcc agccggtggc
     1381 aaaggccgtc acgaaatcgg ctgacgtcga tcggttggtc atcattctct ccttatgcgg
     1441 cctttggaat gaaggccgtg acttcgattt cgaccttcgc ccgcacgtcg accaggccgt
     1501 cgatatagag caatgtcgag ggcgggaagt ttcgcccgag cgtctccttc catgcggcgc
     1561 caattccggc gccggcggcc tcatattcgc tccggctggt gagataccag ttcaggcgga
     1621 cgatatgttc ggggcctgcg cccgcttccg ccagaagctt cacgatccgc cgcagcgcgc
     1681 ttccgacctg agccgccaga tcgggcgcat agtcgccctt cccgtcgccg ccggtctggc
     1741 ctgccaacac aatccatcgg cctgggccat cgagttccac gccatgtgaa aagccgcgcg
     1801 gtttcggcca ttcggccggt tgcaagatac gcatgagcgt tttctccccg ttcggtgctt
     1861 cgtcccggaa accgcgatta gagcatgatg tgattaggtg gaatcgacat catgctctag
     1921 ctctttgttt gagcatgatc ttttcggaaa accggtttcc acttttccgg atcatgctct
     1981 agagtccgtt gatggatacg ttgaaagtac gcgatgcggc cgatgtcgaa gcggtggtgc
     2041 gggcggcgat tgccggcgag cagccgctgg aggtcatcgg ccacggctcc aagcggctga
     2101 tcggccagcc gatggcgacc aacgcggtgc tcgacctgtc ggcgctcaat gcggtgacgt
     2161 cctacgagcc gaacgagctg atcatcacgg tcgaggccgg cgcgccgctc gccgacgtgt
     2221 cgtcgctgat cgattcgaag aaccagcagt tcgctttcga gccggtcgac accacagccc
     2281 tgttgggcgg gtccgggcgt ggaaccatcg gcggcatgat cggtgctggc ctcgccggcc
     2341 cgcgccgcat cagggctggc ggcgtgcgcg atcatctgtt gggcgcgcat gcggtgtccg
     2401 gtttcggcga cagcttcaag accggcggca aggtggtaaa gaatgtcacc ggctacgacc
     2461 tctgcaagct gttggcgggc tcctggggca cgcttgcggt catgaccgag gtgacgctga
     2521 aggtgatgcc gcggccggaa agcgagcgca cgctggtgct gcgcggcctg gacgatctcg
     2581 ccgccaaccg ggcgatgacg atggctctgg gctcgccctt cgacgtttcc ggcgccgcgc
     2641 atctgccggc atccgcgctg cggccggagg ctggcgggct cgaccggctc aacgcgccgc
     2701 gcgaagcggc cacgctgctg cggctggagg gcaccgcggc gtcggccagc catcgggcgg
     2761 cctcgctcgc caagctcttg gcgccgttcg gcgcggccgc gacgctggag gacacggcgt
     2821 cggcttcggc ctggatttcg gttcgcgatg ccgcgccatt cgcggccgct ggagcgcttg
     2881 gcgcctggcc ggtctggcgc atcgtctgcc cgccggccgc gggcggggcg ctgggccagg
     2941 cgctggcgcg cgagagtgga ggcgatgtga tctatgattg gggcggcggc ttgatctggg
     3001 cggcgctgcc gccgaagccc gatgcgcagg ccgccctggt gcgccagcgc gtcggcgcgg
     3061 ccgccggcca cgcgacgctg ctgcgggcgt ccgacgaggt ccggcgcagg gtcgacgtat
     3121 tccatcccca ggccggcggg gtggcggcct tggaagaacg ggtgcgctcg agcttcgatc
     3181 cgaaggccat tctcaatcgc ggccgcctga ggcgggggca ggtgggaggg gaagcggcat
     3241 gaaaaccgag tttaccctgg cacagctcgc cgatcccgat attgccg
//
LOCUS       DASQCV010000551         2527 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1279559, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000551 DASQCV010000000
VERSION     DASQCV010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1279559"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..516
                     /locus_tag="VEQ16_08390"
     CDS             <1..516
                     /locus_tag="VEQ16_08390"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP63892.1"
                     /translation="ADYEIIRHLAPIVPWPYPENGARDFLAGVLPLQGQSRWVWALFL
                     KTAPDEAIGIVDLRRGEGENRGFWLARRFWSQGLMTEACDAVTDYAFGPLGFERLTLC
                     NAVGNARSRRLKEKAGATFLRVEPAKFVDPALTMHEVWELRRADWLARRKGDYSSATM
                     FATFRPQPDGR"
     gene            complement(462..1835)
                     /locus_tag="VEQ16_08395"
     CDS             complement(462..1835)
                     /locus_tag="VEQ16_08395"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HYP63893.1"
                     /translation="MSTKLKAESLSFFESIIMGVAGSAPAYSIAVAIAGLLGTAGKVS
                     PNALLLFAVPMLGIAVAYKGLTAKMVNAGAAYEWTKSVFGGFFGYFSGWAVLIAALVF
                     MVTGSVPLGTATIDLYDPNLASNVWLTTGIGAVWFIAIGLVLIAGIELTSKIQVVMST
                     VELGILVIISIAAYMHSVGHALTPFTWSWFGFGYPAGTFASSALITVFLYWGWDVTAN
                     LSEETKSEHNAAGKGGFLSIFATIASFVAFTVAALMIFSLSDATGYSDNLIYHVAIAS
                     GLGKTGGYAATLALILSSVATLETTMLQFSRTLFAMGRDHALPNYFGQVHERTVTPVR
                     TMYLLLVLGLIMIFVSSFQSSISKILTDSVAAISVQVCYYYGLAGLVCAWVYKDSAKN
                     SVGTLLQYVIYPALSAIALFILAIYAFTTFDTLTKIVGAGGLLIGILFYRPSGWGRKV
                     ANIVAEE"
     gene            complement(1879..>2527)
                     /locus_tag="VEQ16_08400"
     CDS             complement(1879..>2527)
                     /locus_tag="VEQ16_08400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004668 - protein-arginine deiminase
                     activity [Evidence IEA];
                     GO_process: GO:0009446 - putrescine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HYP63894.1"
                     /translation="LVVEGGAIHVDGEGTVLVAEQCVLNENRNAAPSRQDMERLLKDY
                     LGVSHVIWVGQGVPGDETDGHIDNLACFVRPGLVLLSWCDDPSDPHYAVSRDAEWRLQ
                     AVKDAKGRHIQVERIPMPTPMCYTDEEAGGVDATASGMNRRAGERMAASYVNFYIANG
                     AIIAPCFGVETDRAAHDVLARLFPDRDIVMVPAREILLGGGNIHCITQQQPRSGF"
BASE COUNT          535 a          784 c          789 g          419 t
ORIGIN      
        1 gccgattacg agatcatccg ccatctcgcc cccatcgtgc cctggcccta tccggaaaat
       61 ggcgcgcggg acttcctcgc cggcgtgctg ccgctccagg ggcaaagccg ctgggtctgg
      121 gccttgttcc tgaaaaccgc gccggacgag gcgattggca ttgttgatct gcggcgcggc
      181 gagggagaaa atcgcggctt ctggctggcg cggcgtttct ggagccaggg gctgatgacc
      241 gaggcctgcg atgcggtaac ggattatgcg ttcgggccgc tcggtttcga gcgtctgacc
      301 ttatgcaacg cggtgggcaa tgcgcgctca cgccgcctca aagaaaaagc gggcgccaca
      361 ttcttgcgtg tggagcccgc caagtttgtc gaccccgcgc tgacgatgca cgaggtctgg
      421 gagctgcgcc gtgccgattg gctggcacgg cgcaaggggg attattcctc ggcgacgatg
      481 ttcgccacct tccggcccca gccggacgga cggtagaaca ggatgccgat cagcagcccg
      541 cccgccccga cgatcttggt cagggtgtcg aaggtggtga aggcgtagat ggccaggatg
      601 aacaaggcga tcgcgctgag ggcggggtag atgacatatt gcaggagcgt gccgacggaa
      661 ttcttggcgc tatccttgta gacccaggcg cagaccagcc cagcgaggcc atagtagtag
      721 cacacctgca ccgagatcgc cgccacggag tcggtcagga tcttggagat cgacgactgg
      781 aagctggaaa cgaagatcat gatcaggccc agcaccagca gcagatacat ggtgcgcacc
      841 ggcgtcaccg tgcgctcatg cacctggccg aaataattcg gcagcgcatg gtcccgcccc
      901 atggcgaaca aggtacggga gaattgcagc atcgtcgtct ctagcgtggc aacggaggag
      961 aggatgagcg ccagcgtggc ggcatagcca cccgtcttgc caaggccgga ggcgatggcg
     1021 acgtgataga tgaggttgtc gctatagccc gtggcgtcag acagcgagaa gatcatcagc
     1081 gccgccacag tgaaggcgac gaaagaggcg atggtggcga agatagagag gaacccgcct
     1141 ttgcccgccg cgttatgctc ggacttggtc tcctccgaga ggttggcggt gacgtcccag
     1201 ccccaataca ggaacaccgt gatcagcgcc gagctggcga aggtgccggc cggatagccg
     1261 aacccgaacc aggaccaggt gaacggggtg agggcatggc cgaccgaatg catgtaggcg
     1321 gcgatggaga tgatgaccag gatgccaagc tcgacggtgc tcatcaccac ctggatcttg
     1381 ctggtcagct cgatgccggc gatgagcacc aggccgatgg cgatgaacca cacagcgccg
     1441 atgccggtgg tgagccacac attactggcg aggttggggt cgtacaggtc gatggtggct
     1501 gtgccgagcg gcaccgagcc ggtgaccatg aacaccagtg ccgcaatcag caccgcccag
     1561 cccgaaaaat agccaaaaaa tccgccaaag acggatttgg tccactcata ggcggcgccc
     1621 gcattcacca tcttggcggt gaggccctta taggcgaccg cgatgcccag catgggcacg
     1681 gcgaagagga gcagcgcgtt gggcgaaacc ttgcccgcgg tgccaagcag gccggcaatg
     1741 gccaccgcga tggaataggc cggcgcggaa ccggccacgc ccatgatgat agattcgaaa
     1801 aacgatagcg attcagcctt aagtttcgta ctcacccatt ccccctgtcg ttagaaacca
     1861 ctcgttagaa accactcgtt agaaaccact cctaggctgc tgttgggtga tgcaatgaat
     1921 attgccaccc cccagcagga tctcacgcgc cggcaccatg acaatgtccc ggtccggaaa
     1981 cagtctggcc agcacgtcat gcgctgcccg atccgtctcc acaccaaaac agggtgcaat
     2041 aatcgcgcca ttcgcgatat aaaaattgac ataggaggcc gccatacgct caccggcgcg
     2101 gcgattcatg ccagaggccg tcgcatccac gccgccagct tcctcatcag tatagcacat
     2161 cggcgttggc atggggatac gctccacctg aatatgccgg cccttcgcgt ccttgaccgc
     2221 ctgcagccgc cactcggcat cgcggctcac cgcgtaatgc gggtcggacg ggtcgtcgca
     2281 ccagctcagc agcaccaggc cgggccgcac gaaacaggcc agattgtcga tatgcccatc
     2341 tgtctcgtcg cccggcacac cctggcccac ccagataaca tggctgacgc cgagataatc
     2401 cttcagcaaa cgctccatgt cctggcgcga gggggccgcg ttgcggttct cgttcagcac
     2461 gcattgctcg gccaccagaa ccgtgccctc gccatccaca tgaatggcgc cgccctccac
     2521 caccagc
//
LOCUS       DASQCV010000552         1923 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3103309, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000552 DASQCV010000000
VERSION     DASQCV010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1923
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3103309"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VEQ16_08405"
     CDS             complement(<1..228)
                     /locus_tag="VEQ16_08405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HYP63895.1"
                     /translation="METGVKIFLAGAGPGSADLLTVRLARLLARADIILHDSLIGPDV
                     LALARPEAELIDVGKRCGGKAHPQAEICRLLV"
     gene            complement(270..1823)
                     /locus_tag="VEQ16_08410"
     CDS             complement(270..1823)
                     /locus_tag="VEQ16_08410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012977658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HYP63896.1"
                     /translation="MSESEELPTYSKVGLVIIAVCTMLATLMQALDSTIANVALPYMQ
                     GSMSASQDEIDWVLTSYIVAAAICTAPTGFLVSRFGRTRVYVVSIVGFTLSSALCGAA
                     QSVGQIVLFRLLQGGFGAALIPLSQTVLLELFPREKRGLAMSFWGIGVQVGPIAGPFV
                     GGFLTDNFSWRWVFYVNVPLGIAAALGLYFYLKETTRNRSMNVDWLGFAALSLAVGAI
                     QLLFDRGEVVDWFSSTEIIIEAVVAGVGFYIFVVQMLLAKEPFLSPKLFTDANFVIGT
                     FMVFLVGLNQFATLALLSPYLQNLAGDPVIMTGFLLGPRGVGMMCAMLLAGQLMGRID
                     VRLFVGTGFVIAIIAMQSFTLWTPDVSHREIIINGIVQGLGSGFIFMPLSTVIYATLP
                     ANLRVEAAGVFNLLRNLGSALGISVTGALLQSNTQINHEIIGSVITPFNHALQSGMAG
                     KFWNPETLAGAAALDAEITNQASIIAYSDDFKLMLVITIVVMPLVLLLRPNKNEVEMT
                     PEEKAQALH"
BASE COUNT          435 a          606 c          566 g          316 t
ORIGIN      
        1 gaccaataga cggcaaattt ccgcctgcgg atgcgccttg ccgccgcaac gtttgccgac
       61 atcgatcagc tccgcctctg gccgggccaa cgccagcacg tccggcccaa tgaggctgtc
      121 atgcaggatg atgtccgctc gcgccagcag gcgggcgagc ctgaccgtga gtaaatccgc
      181 gctgcctggc ccagctccgg cgaggaaaat ttttacgcct gtctccatgc gggggaactg
      241 ggctaaaagc gggtgggatg caagggcgct cagtgcagcg cctgcgcctt ctcttccggc
      301 gtcatctcca cctcattctt attcgggcgc agcagcagca ccagcggcat gaccacgatg
      361 gtgataacca gcatcagttt gaaatcgtct gaataagcta tgatgctggc ctggttggtg
      421 atctcagcat ccaaagccgc cgccccggcc agcgtctccg ggttccagaa tttgccggcc
      481 atcccgctct gcagcgcatg gttgaagggg gtgatgacgc tgccgatgat ctcatgattg
      541 atctgcgtat tggattgcag cagcgcgccg gtgacggaaa tgccgagcgc gctgccgaga
      601 ttgcgcaaga gattgaacac gccggccgcc tcaacgcgca aatttgccgg cagggtggcg
      661 tagatgactg tgctgagcgg catgaaaatg aagccggagc ccaacccctg cacaatgcca
      721 ttgataatga tctcgcgatg cgacacatcc ggcgtccaaa gcgtaaaact ctgcatggcg
      781 atgatggcga tgacgaagcc cgtgccgaca aagagccgca cgtcgatgcg ccccatgagc
      841 tgccccgcca gcaacatggc gcacatcatg cccaccccgc gcggcccgag caggaagccg
      901 gtcatgatca ccggatctcc ggccagattc tgcaaatagg gcgagagcag cgccagcgtg
      961 gcgaactggt tgagcccgac caggaacacc atgaaggtgc cgatgacaaa attcgcatcg
     1021 gtgaacagtt ttggcgacag aaacggctcc ttggccagca gcatctgcac gacaaaaata
     1081 tagaagccga cgcccgccac caccgcctca atgatgatct cggtggagct gaaccaatcc
     1141 accacctcgc cacggtcgaa cagcagctgg atggcaccca ccgccaggct gagcgcggca
     1201 aagcccagcc agtccacatt catggagcgg ttgcgcgtgg tttccttgag atagaaatac
     1261 agccccaaag cagccgcgat gccgagcggc acattcacat agaacaccca gcgccaggaa
     1321 aaattatcgg tgaggaagcc gccgacgaac ggcccggcga taggccccac ctgcacgccg
     1381 atgccccaga aggacatggc caacccccgc ttctcacgcg ggaaaagctc cagcagcacg
     1441 gtctgcgaga gtgggatgag cgccgcacca aacccgccct gaagcaggcg gaacagcacg
     1501 atctgcccca ccgactgcgc cgcgccgcac aaggccgagg acagggtaaa accgacaatg
     1561 gagaccacat aaacccgtgt gcgcccgaaa cgcgacacca ggaagccggt cggcgccgtg
     1621 cagatggccg cggcgacgat atagctcgtc agcacccaat cgatctcatc ctggctggcc
     1681 gacatggagc cctgcatata aggcagcgcc acattggcga tggtgctatc caacgcctgc
     1741 ataagcgtgg ccagcatcgt gcagactgcg atgatgacta gccccacctt gctataggtg
     1801 gggagttcct cgctctcgct catgcgcggc gttcctgcgg cgcggctggt ctcgtcttat
     1861 aaatgggcgt cgtccctgcg gtaatgcttc gtttcattgt gacagaagga agacggcagg
     1921 tga
//
LOCUS       DASQCV010000553         3481 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_616608, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000553 DASQCV010000000
VERSION     DASQCV010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3481
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_616608"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1920
                     /locus_tag="VEQ16_08415"
     CDS             <1..1920
                     /locus_tag="VEQ16_08415"
                     /inference="COORDINATES: protein motif:HMM:NF024884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP63897.1"
                     /translation="DVTRYMRLSAIPGPWPVAEKVLALIGPDDAAANVVRHAARLAEA
                     LRAPLTSFHIERTDDNAKVQAALDLTVQLGGSVVTQSAPDMVRAVLDYAAAQNITHIV
                     VGRAARGRAFGRRFSEALTRQAQAYTLHFVPLPAAAPPRPFARTLRPDWSPYAWASLL
                     LGATTLGGILLKDYIPQEAMGLIFTGLIAAMASRAGRGPGLFTAAAGFVLWNFFFLLP
                     VYTLSVGDPRDVVALLVFLLVGLVTGTLAGRVRQEAATAAARVEALRRISLFGQRLSR
                     AATLSDVLAAAAEETAAITGAGLLLLNNGGTLAAEASHPPGTALDEAAFAAAEWCATH
                     DIETGIGTDTLPSVSWRFFPIRSHGAVTGVLGARTATAPPAPTVQTLVTLADHTALAL
                     ERARLAMQTARTEAHEDSQKLRNALLSSLSHDLRTPLTTIRGAAETLSSMGEQLDPAT
                     RADLLASITHDTARMGKFLANITDMARVESGAITVKRERLALDAIAEAAIARTPGALY
                     TGINIAPDAAHVSADPNLLEQVLVNLLDNAVKYAPPGSRISITARRRANNVALSVADE
                     GVGIPPAELSAVFDSFFRASRGDRVAPGTGLGLAIAKAFTEAMGGHISAQSPRLDLPA
                     DGLPGTIITVELPAA"
     gene            1917..2597
                     /locus_tag="VEQ16_08420"
     CDS             1917..2597
                     /locus_tag="VEQ16_08420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007436859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYP63898.1"
                     /translation="MISGRILVVDDEPQIHRFLNPALSAAGYEPLRADNAAEALRQAA
                     AVAPDLVLLDLGLPDMDGHELLRRLRAFSTVPVIILSARDREAEKIAALDNGADDYVE
                     KPFGLGELMARIRTALRRQGATTPAAASVQVADIEITPNHATRNGETLPLSKREHALL
                     LLLARNRGRVLTHRQILTALWGPAHTEDVAYLRVYIGQLRKHLGEEIAKLIVTEPGVG
                     YRLIDDAA"
     gene            complement(3018..>3481)
                     /locus_tag="VEQ16_08425"
     CDS             complement(3018..>3481)
                     /locus_tag="VEQ16_08425"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020594582.1"
                     /note="catalyzes the formation of
                     pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose
                     1-diphosphate from nictinate D-ribonucleotide; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nicotinate-nucleotide diphosphorylase
                     (carboxylating)"
                     /protein_id="HYP63899.1"
                     /translation="VKISCTRKTTPGLRFAEKYAVRAGGGVNHRFGLDDAILIKDNHI
                     AIAGGVGKAIEAARMSTGHLVKIEIEVDTLVQLAEAMPYVPDAVLLDNMTPAQLREAV
                     GMIGRRSIAEASGRVNAETAPAIAETGVDLISAGWLTHSAKVLDIGLDFVG"
BASE COUNT          565 a         1307 c         1015 g          594 t
ORIGIN      
        1 gacgtgacgc gctatatgcg cctctccgcc atccccggcc cctggcccgt ggcggaaaaa
       61 gtgctcgccc tcatcggccc ggacgatgcc gccgccaacg tcgtccgcca cgccgcccgc
      121 ctcgccgagg ctttgcgcgc gccgcttacc agcttccata tcgagcgcac ggacgacaat
      181 gcgaaagtcc aggccgcgct cgaccttact gtccagctcg gcggcagcgt cgtcacgcag
      241 agcgcgccgg acatggtgcg cgccgtgctc gattacgcgg cggcgcagaa catcacccat
      301 atcgtcgtcg gccgcgccgc gcgcgggcgt gcctttggcc ggcgcttttc ggaagcgctg
      361 acacgccagg cgcaggccta cacgctgcat ttcgtgcctt tgcccgccgc cgcgccgccg
      421 cggccctttg cccggacgct gcggcccgac tggagcccct atgcctgggc cagcctgctg
      481 ctcggcgcca ccacgctcgg cggcatcctg ctgaaagact atatcccgca ggaggccatg
      541 gggctcatct tcaccggcct catcgccgcc atggccagcc gcgccgggcg cggccctggc
      601 ctgtttaccg ccgccgccgg cttcgtgctg tggaatttct tcttcctctt gcccgtctac
      661 acgctctcgg tgggcgaccc gcgcgacgtg gtggcgctgc tggtcttcct cctggtcggg
      721 ctcgtcaccg gcacgctggc cgggcgcgtg cgccaggagg ccgccaccgc cgccgcccgc
      781 gtcgaggcgc tgcgccgcat ctccttgttc ggccagcgcc tctcgcgcgc cgccactctg
      841 tcggacgtgc tcgccgccgc cgccgaggaa accgccgcca tcaccggcgc cgggctgctg
      901 ctgctcaata atggcggcac cctggccgcc gaagccagcc acccgcccgg cacggcgctg
      961 gacgaggccg ccttcgccgc cgccgaatgg tgcgccacgc acgacatcga aaccggcatt
     1021 ggcaccgaca ccctgccgtc agtctcctgg cgctttttcc cgatccgcag ccacggcgcc
     1081 gtcaccggcg tgctcggcgc ccgcaccgcc accgccccgc ccgcccccac ggtgcagacc
     1141 ctcgtcaccc tggccgacca taccgccctg gccctggagc gtgcccgcct cgccatgcaa
     1201 accgcccgca ccgaggcgca tgaggacagc cagaaactcc gcaacgcgct gctctcctcg
     1261 ctcagccacg atctgcgcac gccgctcacc accatacgcg gcgccgccga gaccctctcc
     1321 agcatgggcg agcagctcga ccccgccacc cgcgccgatc tgcttgcctc catcacccac
     1381 gacaccgcgc gcatgggcaa gttcctcgcc aacatcacgg acatggcgcg cgtcgaatcc
     1441 ggcgccatca cggtcaagcg cgagcggctg gcgctggacg ccatcgccga ggccgccatc
     1501 gcccgcacgc cgggcgcgct ctataccggc atcaacatcg cgcccgacgc cgcccatgtc
     1561 agcgccgacc ccaacctgct cgaacaggtt ctcgtcaatc tgctcgacaa tgccgtgaaa
     1621 tacgccccgc ccggcagccg catcagcatc acggcccggc gccgggccaa taatgtggcg
     1681 ttgagcgtgg cagatgaggg cgtgggcatc ccgcccgccg agctgagtgc cgtgttcgac
     1741 agtttcttcc gcgccagccg gggcgaccgc gtggcgcccg gcacagggct cggcctcgcc
     1801 atcgccaagg ctttcacgga ggccatgggc gggcatattt ccgcgcagag cccgcgcctc
     1861 gatctgccag ccgatggcct gcccggcacc atcatcaccg tggagcttcc cgccgcatga
     1921 tttctggacg catcctggtc gtcgatgacg agccgcaaat ccatcgtttt ctcaatcctg
     1981 ccctcagcgc ggccggctat gagcctttgc gcgccgacaa cgccgcggag gcgctgcgcc
     2041 aggccgccgc ggtggcgccg gacttggtgc tgctcgatct cggcctgccg gacatggacg
     2101 ggcatgagct gctgcgccgc ctgcgcgctt tctccaccgt gccggtgatc atcctctccg
     2161 cgcgcgaccg cgaggcggag aagatcgcag cgcttgataa tggcgccgat gattacgtgg
     2221 aaaaaccatt cggcctgggt gagctgatgg cgcgcatccg caccgccctg cgccgccagg
     2281 gtgccaccac gccggccgcg gcgagtgtcc aggtggcgga catcgagatc accccgaacc
     2341 acgccacgcg caatggcgag accctgccct tgagcaagcg cgagcatgcc ttgctgctgc
     2401 tgctggcgcg caatcgcggc cgcgtgctca cgcaccggca gattctcaca gccctctggg
     2461 gcccggcgca tacggaggat gtggcctacc tgcgcgtcta tatcggccag ctgcgcaagc
     2521 atctcggcga ggagatcgca aagctgatcg tgaccgagcc gggtgttgga taccggttga
     2581 tcgacgacgc ggcgtaaccc cgacaccaaa acaaatattc cttggttcga tcagtgcgag
     2641 ccaaggaaca attgttttgg cttttgcagg gacctactat cgacacgccg atctgtactg
     2701 tagccaatca tcaatcgacg cgaatacgga tgccgaaggc caccggggat cagcctccgg
     2761 cttaccaccc cacgttagat gaatctcaca gacctgatga ttgtccaact cgattaatat
     2821 gtcatcttga tcgttgcgct tcgcaagtac agtacagctc cggccaaata gaatgtgatt
     2881 tggccctatc tcgcggacca attcgcgctc caagctattt tgtaaggata catcttggat
     2941 taagtgccaa gcctccggcc agctgttagg catcttgtgt ccttgcggat ttaggtgaaa
     3001 cctgcgaggc gattcgccta ccccacgaaa tcgagcccga tatccagcac cttcgcgctg
     3061 tgcgtcagcc acccggcgga gatcaggtcc acccctgtct ccgcaatcgc cggcgccgtc
     3121 tcggcattga cgcgcccgga cgcctcggca atcgaacgcc gcccgatcat ccccaccgcc
     3181 tcgcgcaatt gcgccggtgt catattatcc agcagcaccg catctggcac gtagggcatc
     3241 gcctctgcca gctgcaccag cgtgtccacc tcgatctcga ttttcaccag atgtcctgtg
     3301 gacatacgag cggcctcgat cgccttgccc acgccgccgg cgatggcgat gtggttatcc
     3361 ttgatcagaa tcgcgtcatc gagaccgaaa cgatgattca cgccgccgcc cgcccgcacc
     3421 gcatattttt ccgcaaagcg taagcccggt gtcgtcttgc gcgtgcagga aatttttacc
     3481 c
//
LOCUS       DASQCV010000554         2618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2772519, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000554 DASQCV010000000
VERSION     DASQCV010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2618
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2772519"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..649
                     /locus_tag="VEQ16_08430"
     CDS             <1..649
                     /locus_tag="VEQ16_08430"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HYP63900.1"
                     /translation="NTVAEIKGSEKPDEVVIIGGHLDSWDLGTGATDNGTGSMAVLAA
                     ARALVKSGVKPKRTIRFILFTGEEQGLNGSRAYVAAHKGEMGKISGVLVHDTGTGKVL
                     TIGLMHNYAARETMDRALYALAREKSIGLAEPSLRSEGGSDHVPFDEAGVPASWCIQA
                     VADYEKDHHSQTDTLDRVKWDDLAEGAQVLAVYAYNVAELPDMLPRKPAATAAPE"
     gene            734..1183
                     /gene="dtd"
                     /locus_tag="VEQ16_08435"
     CDS             734..1183
                     /gene="dtd"
                     /locus_tag="VEQ16_08435"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020594258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HYP63901.1"
                     /translation="MRAVVQRVSRAKVTVEGKVAGEISRGLVILLGVGREDTPAVAAA
                     LAEKTAHLRIFEDEKEKMNRSLLDIKGGALVVSQFTLYGDARGGRRPSFIAAAAPEQA
                     KSLYEAFCAALRTVGVTVATGIFQAMMSVELVNEGPVTILLDSDKTF"
     gene            1251..1904
                     /locus_tag="VEQ16_08440"
     CDS             1251..1904
                     /locus_tag="VEQ16_08440"
                     /inference="COORDINATES: protein motif:HMM:NF020296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HYP63902.1"
                     /translation="MGTRQNVAGMARFGIRAKRVYGVAKPKLDALARRIGKNHQLALE
                     LWDSGVHDARILAGLVDEARLVTSRQMNRWMRDFDNWDVCDGTCCHLFVFAKPAWGKA
                     LSWSGRRAEFQKRAGFALMAYLALHDKRADDRKYARLFSIIRSAAGDERNFVRKAVNW
                     ALRQIGKRNLALNRLAIREAERIRKIDRKAARWIAADALRELRSTAVRRRLLLKQSG"
     gene            1908..2360
                     /locus_tag="VEQ16_08445"
     CDS             1908..2360
                     /locus_tag="VEQ16_08445"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP63903.1"
                     /translation="MPAQPARIATRRARLADAPAIAELSGQLGYPASPQEVAERLARL
                     LRRPHDTAVLIAESPAHEVIGWLHVSLLPLLEVPLRAEMNSFIVAEGQRSLGAGAKLL
                     EAAEQWAKKKGCKDISARSNVIRDRAHAFYVRNGFEHYKTQKAFRKDL"
BASE COUNT          526 a          804 c          838 g          450 t
ORIGIN      
        1 caacaccgtt gccgagatca aaggcagcga gaagcccgac gaagtggtga tcatcggcgg
       61 gcacttggat tcctgggatc tgggcaccgg cgccaccgac aacggcactg gttccatggc
      121 ggttctggcc gccgcccgcg ctctggtcaa atccggggtc aaaccgaagc gcaccatccg
      181 ctttatcctt ttcaccggag aagagcaggg tctcaacggc tcgcgcgctt atgtagccgc
      241 gcacaaaggc gagatgggca aaatctccgg cgtgctggtg cacgataccg gcaccggcaa
      301 agtccttacc atcggcttga tgcacaacta tgccgcgcgc gaaaccatgg atcgcgctct
      361 ctatgcactg gccagggaga aaagcatcgg cctcgccgag cccagcctgc gcagcgaagg
      421 cggcagcgat cacgttccgt ttgacgaagc cggcgtgccg gcttcctggt gcatccaggc
      481 ggtcgccgac tacgaaaagg accaccactc gcagaccgac acgctggacc gcgtaaaatg
      541 ggatgatctg gccgaaggcg cccaggtgct ggccgtatac gcgtataacg ttgccgagtt
      601 gccggacatg ctgccgcgca aacccgcggc gacggcggcg ccggaatagg agacggcttt
      661 tcgatgcggc gccaggcttc gaagtgtgct gtggtccccc gtgtcagaac gcctctcgga
      721 gaaacgtcca tagatgcgag ccgtcgttca gcgagtgagc cgcgctaaag tcaccgtgga
      781 aggcaaagtc gcgggcgaga tctcacgagg cctggtgatt ctgctgggtg tcgggcgtga
      841 agacacgccg gcagtggccg cggcactggc cgaaaagacg gcccatctgc gtatcttcga
      901 agacgaaaag gaaaaaatga accgctcgct gctcgacata aagggcggcg ccctggttgt
      961 gtcacaattc acactgtacg gggacgcccg cggcggccgg cggcccagct tcatcgcggc
     1021 tgcggctccc gagcaggcca agagcctcta cgaagccttt tgcgcagcgc tcagaactgt
     1081 cggcgtcaca gtggccacgg gaatttttca agctatgatg tccgtggaac tagtcaatga
     1141 aggtccggtc accatcctcc tcgatagcga caaaaccttc tagccgcgcg cgcagatccg
     1201 gccggccggc gccctggacg tgccggcgtt gcctcggcga actccgccgt ttgggcaccc
     1261 gccagaacgt ggcgggcatg gcgcggttcg gaatccgcgc gaagagagtc tacggggtgg
     1321 ccaaaccgaa actggatgcg ctcgcgagac gtatcgggaa aaatcaccag ctggcgctcg
     1381 agttgtggga ttccggagtg catgacgcgc ggattctggc cggcttggtc gacgaggcac
     1441 ggctggtgac ctcgcggcag atgaaccgct ggatgcgcga tttcgacaac tgggatgtgt
     1501 gcgacgggac ctgctgccac ctttttgtgt tcgccaagcc cgcctgggga aaagccctca
     1561 gctggagcgg ccgcagggcg gaattccaga agcgcgccgg ttttgccctg atggcctacc
     1621 tggcgctgca cgacaagcgt gccgacgatc gaaaatatgc acgccttttt tcgatcatcc
     1681 gcagcgccgc cggggatgag cggaacttcg tacgcaaggc ggtgaactgg gcgctgcggc
     1741 agatcggaaa gcgcaacctg gctctcaatc gcctggcgat ccgggaagcg gagcgcatcc
     1801 ggaaaatcga ccgcaaagct gcgcgatgga tagccgccga cgctctgcgc gaattgcgca
     1861 gcacagccgt gcggcggcgg ttgctcctaa agcagagcgg ctgatacatg cccgcccagc
     1921 ccgcaagaat cgcgacacgc agggctcggc tggcggacgc gccggctatt gccgaactca
     1981 gcggccaatt gggctatcct gcttcccccc aggaggtggc ggagcgtttg gccaggctgc
     2041 tgcggcggcc gcacgacaca gcggttctga ttgccgaatc tcccgcccat gaggtgatcg
     2101 ggtggctgca cgtcagccta ctgccgctgc tcgaggttcc gctgcgcgct gagatgaaca
     2161 gcttcatcgt tgccgaaggt cagcgcagcc tgggcgcggg agcgaagctg ctcgaggccg
     2221 ccgaacagtg ggccaaaaag aaaggctgca aagacatttc cgcccgctcc aatgtaatcc
     2281 gcgaccgcgc ccacgccttt tacgttcgca atggcttcga gcactacaag acccagaagg
     2341 ctttccgcaa ggacctgtag acttattccc cgtttctcag ggggcgggcc ccggctcccc
     2401 cgaaggcgcg gtgcgggaaa ggcgctcgaa ggcaatattg cgctgtgggt cgaaagagag
     2461 cacctgcgcc gggttgtcgc attcgcgcac gctgttcgcc tcccagttga aatcctatcg
     2521 ttgtacgata taatcgttaa atgaagcgaa tttcagaaac cgaataccag gccatggccg
     2581 aactgcgtta ccgtatccgc ctctttctgc gggagagc
//
LOCUS       DASQCV010000555         2776 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_451483, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000555 DASQCV010000000
VERSION     DASQCV010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2776
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451483"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..380)
                     /locus_tag="VEQ16_08450"
     CDS             complement(<1..380)
                     /locus_tag="VEQ16_08450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014189335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYP63904.1"
                     /translation="MSGLSFELGDEQAAIRDMARDFAAEHLAPFAVEWDRDKFFPLET
                     MRAAAALGMGGIYVDEAHGGSGLSRLDAALIIEALATGCPTIAAYISIHNMVAGMIDR
                     YGNDEQRRKYLPQLCSMEHFASYCL"
     gene            complement(476..1330)
                     /locus_tag="VEQ16_08455"
     CDS             complement(476..1330)
                     /locus_tag="VEQ16_08455"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYP63905.1"
                     /translation="MARQDVGGIEIDYEFFGDEKAPVIILTPGGRYPRDTPGLPQLAA
                     ALVQGGYRVLSWDRPNCGASDVSFEGTSESVLHADTLVGLTTALGLDRFALAGGSAGS
                     RISLMAAARVPEKVSKLFIWWISGGAISLAQLANYYCADAAAAATRGGMEAVLVGFAD
                     QIARNPNNRELILKWKPEDFIARMQLWAEGYAYSRTSPVPGISAEQFARMTMPAIVLH
                     SGKSDLSHTREASEQTASLLPNAQLLEPPWPDQEWNNCSKIPNEPGRGRFERWPLLAP
                     MILEFLNA"
     gene            1554..2264
                     /locus_tag="VEQ16_08460"
     CDS             1554..2264
                     /locus_tag="VEQ16_08460"
                     /inference="COORDINATES: protein motif:HMM:NF013757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HYP63906.1"
                     /translation="MLSVFELVAKLQPVGVSVLARELNADKSAVQRDLMTLADAGWIH
                     AVPGPRGQWELTLHALSLARPPHSTDSLRHRLRPLMERLHKATGETVYLNLPYQNHFV
                     VVDALESQQLLRVVPSIGMSVPMAGSATARVYLAFMPPPVQEALIGAAAAAERQEDFA
                     ATRQRGYAVNDGDLLPGSVAIAAPVFTSHNHPAGVLVVVGPSERLPPERQHEIGLALR
                     EAGRGGMDASASAAALAG"
     gene            2418..>2776
                     /locus_tag="VEQ16_08465"
     CDS             2418..>2776
                     /locus_tag="VEQ16_08465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63907.1"
                     /translation="MNVVTNPGAHWDPYDPKYFANPYPAFSRLREEAPLYYNEQYDFY
                     AVSRYEDVERGLLDRDTFISSRGGILEIIKQNVAIPPGVFIFEDPPLHTIHRSLLTRV
                     FTPKKMNALEPQIRAFCA"
BASE COUNT          524 a          879 c          861 g          512 t
ORIGIN      
        1 aggcaatagc tggcgaaatg ctccatgctg caaagctgcg gcaaatattt gcggcgctgc
       61 tcgtcattgc cgtaacggtc gatcatgccg gcgaccatgt tgtggatgga gatataggcg
      121 gcgatggtcg ggcacccggt agcgagcgcc tcgatgatca gggccgcatc gagacgcgag
      181 aggccggagc cgccatgggc ttcatccaca tagatgccgc ccatgccgag cgcggcagcg
      241 gcgcgcatag tctcaagggg aaagaatttg tcccggtccc actccacggc gaaaggtgcc
      301 aaatgttccg cggcaaaatc ccgcgccatg tcgcgtatgg cggcctgttc atcgccaagc
      361 tcgaaagaca gaccactcat ccggcaaatt tcctccagtt ttctgcgcgc cacttaacag
      421 caggcgcggc gcgcttccat gcgggaattt gcacaaccat tctgtgtaaa ttcacctaag
      481 cgttcagaaa ctccaaaatc atcggcgcca gcagcggcca gcgttcgaag cgcccgcgcc
      541 ccggctcgtt ggggattttc gagcagttat tccattcctg gtctggccag ggcggctcca
      601 gcagctgcgc gttgggcagc aaggaagccg tctgctcgct ggcctcgcgc gtatgcgaga
      661 gatcgctctt gccgctgtgc agcacgatgg caggcatggt catgcgggcg aattgctcgg
      721 cggaaatacc aggcaccggc gaggtgcggg aataggcata gccttccgcc caaagctgca
      781 tgcgggcgat gaaatcctcc ggtttccatt tgagaatcag ctctcggttg ttcggattgc
      841 gtgcaatctg gtcggcgaaa ccgaccagca ccgcctccat gccgccgcgt gtcgccgccg
      901 cggcggcatc ggcgcaataa taattggcca gttgggccag ggagatcgcc ccgccgctga
      961 tccaccagat gaagagcttg ctcaccttct ccggcacacg cgccgccgcc atcagcgaga
     1021 tgcgcgagcc ggccgagccg ccggccagcg cgaagcggtc aagccccagc gccgtggtga
     1081 gtcccaccag cgtatcggca tgcagcacgg attcgctcgt gccttcaaag ctgacatcgg
     1141 acgcaccgca attgggccgg tcccaggaga gcacgcggta cccgccttgc actagcgccg
     1201 ccgccaactg cggcaggccg ggcgtgtcgc gcgggtagcg cccgccaggg gtgaggataa
     1261 tgaccggcgc cttttcatcc ccgaaaaact cgtaatcaat ctcgatcccg ccgacatcct
     1321 gccgtgccat ttttggtccc tcccgtctcg cggttttacg cgaaagcgag tttaggttcg
     1381 cacgctcatg gggtaaactg gccggaatcg ccttaagcgc caccataaca tgactggaag
     1441 tgatccattc ggttgcaaac ctgcttgatt tggattacat tgtaacatat tcaatcgaat
     1501 agtgacataa agagggatca atggcagtca agcgcagcct gagtgcaagc cgcatgttgt
     1561 ctgtgtttga actggtggcg aagctgcagc ccgtgggggt gagcgtgctg gcgcgcgagc
     1621 tgaatgcaga caaatccgcc gtgcagcgcg acctcatgac gctcgccgat gccggctgga
     1681 ttcatgccgt gccggggccg cgcggacaat gggagctgac gttgcacgcc ctctctctgg
     1741 cccgcccgcc gcacagcacg gacagtttgc gccaccgcct gcgaccgctg atggagcggc
     1801 tgcacaaggc aacgggtgag accgtctatc tcaacctgcc ctaccagaac catttcgtgg
     1861 tggtggatgc gctggagagc cagcagttgc tgcgcgtggt gccctccatc ggcatgagcg
     1921 tgcccatggc gggcagcgcc acggcgcgcg tctatctcgc cttcatgccg ccgccggtgc
     1981 aagaggccct tatcggcgcg gcggctgctg cggaacggca ggaggatttt gcggccacgc
     2041 gccagcgcgg ttatgcggtg aatgatggcg atctgctgcc aggctcggtc gccatcgccg
     2101 cacccgtgtt caccagccat aaccacccgg ccggcgtcct ggtggtggtg gggccgagcg
     2161 aacgcctgcc gccggagcgg cagcatgaaa ttggcctcgc gctgcgggaa gcgggacgcg
     2221 gcggcatgga cgcctcggcg tcggcggcgg cgctcgcggg ctgaattctc cagcatctct
     2281 gtggggtgag gccatcgcgg gaacggcgcg ccttgacgct gggcggcttc ccgctatatg
     2341 atatacacta tatcataaaa tccggcgccg gaatttgcgc gccgcctgtg ccgcatcccg
     2401 gtctggagga gcaagccatg aatgtcgtga ccaaccctgg cgcccattgg gacccttacg
     2461 atcccaaata tttcgccaat ccctatccgg ccttctcccg gctgcgcgaa gaggcgccgc
     2521 tctattacaa cgagcaatat gatttctacg cggtgagccg ctacgaggat gtggagcgcg
     2581 gcctgctgga ccgcgacacc ttcatctcca gccgcggcgg gattctggaa atcatcaagc
     2641 agaatgtggc gattccacca ggcgtgttca tcttcgagga cccgccgctg cacaccatcc
     2701 atcgcagcct gctcacccgc gtgttcacac cgaagaagat gaatgcgctg gagccgcaga
     2761 tccgcgcctt ctgcgc
//
LOCUS       DASQCV010000556         1500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_283688, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000556 DASQCV010000000
VERSION     DASQCV010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283688"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(961..>1500)
                     /locus_tag="VEQ16_08470"
     CDS             complement(961..>1500)
                     /locus_tag="VEQ16_08470"
                     /inference="COORDINATES: protein motif:HMM:NF025873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HYP63908.1"
                     /translation="VRLASKLIGWDIDIKSEEEKRREIEEQMTALTAATTPLTVLAGV
                     GPKTIEKIEAAGITSLEKLAGMTPEQLMEIPGIGEKMVDKIYQAVNRFYEGGDAAATA
                     EAGAESAEAATDEAAESGAETVAESATEVTAAEAVAEAPSEATTESVPEESSEETNSA
                     AAESLEDQPPAEQQEEKSS"
BASE COUNT          211 a          459 c          514 g          316 t
ORIGIN      
        1 gcattttgtc tgggagcggc ggcaacatcg tcggccgtcc gggagtgcgc ggaccgggac
       61 gcgtgcccat gggcaccgcg cctggccgct ggccaaacgg acgactgggc gctcctgttc
      121 caccaggacc gccggggcca cttggacgcg gcgtaacggt gcggccacta ccctgccccg
      181 attgctgcgg gcgcatgggc tggccgggcc gcgggccact ggggcggtgg ccactgccgg
      241 gaaccgtacc gggaaccgga cctcgattgc ctgtgggcat tggacgtaaa ggtgtttgcg
      301 gtcgtggtgc accgggcgcg gcggcagcag gacgcgcagc cgcgggttgt gagccagggt
      361 gcgaaggacg gcccgcagcg tgtggcgcgc cggcagagcg agtaccttgc ggctgagctt
      421 ggggagcggc aggccgcggc tgttgagccg gcaggtgctt aggcgcaaca ggtgccgctg
      481 gcgttgcgac tggcgcggcg ggcttcgcag gaatcgctgg agcagcttgt ggagcgggtg
      541 tcgcgggctt cgcggcagtc atcgcgggtg ccggtggaat tgctggcgca gccgctggca
      601 ctggcttagg cgcggcagcg ggcgcagccg caacggccgg cgctgcggca attggcgtta
      661 cggacgcaga tggtgcaacg ggcttcgtag gcgtcggagc cgctggctgc ggccggcgct
      721 gggccgcttt tgcagcaact tccttggctt cgcgctcggc atcggcggca gcctccgcgt
      781 cggccacgcc cttcaagtga tcgcgaacct tttcggctac ttcgacggtg atcgagctgg
      841 aatgggtttt cttttccgtt acgccaaacc ctggcagcag gtcaataatg gctttcgcct
      901 tgacctcgag ctcacgggcg agttcattga tgcggacttg agatgcgtcg ctcatgcttc
      961 ttatgagctt ttctcttcct gctgctcagc cggaggttga tcttccagtg attcagctgc
     1021 cgcggagtta gtctcctcgg acgattcttc gggaacggat tccgttgtag cctcgcttgg
     1081 agcttcagca accgcttcgg cggcggtcac ttcggtggca gattccgcaa cggtttcggc
     1141 gccagattcc gcggcttcgt ccgttgcggc ttcggctgat tcagcgccgg cttcggcagt
     1201 cgcggccgcg tcgccgccct cataaaatcg attcacggct tgataaatct tgtccaccat
     1261 cttttcgccg atgccgggaa tctccatcag ttgctcgggt gtcatccccg ccaacttttc
     1321 caacgaggtg atgcccgcag cctcaatttt ctcgatggtc ttgggcccaa cgcctgcgag
     1381 aactgtgaga ggtgtcgtcg cagcggtaag tgccgtcatc tgctcttcaa tctcgcgtcg
     1441 cttctcttcc tcgctcttga tatcgatgtc ccagccaatg agcttgctgg ccaggcgaac
//
LOCUS       DASQCV010000557         2008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1943432, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000557 DASQCV010000000
VERSION     DASQCV010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1943432"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..419)
                     /locus_tag="VEQ16_08475"
     CDS             complement(<1..419)
                     /locus_tag="VEQ16_08475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HYP63909.1"
                     /translation="MKKDDVRPPPEEIILYEKDPKTKIATITLNRPDALNSPTIAARL
                     RYSQLIHRANVDDDVKVLVIRGVGNNLGGGADLAEQADMIGDDPSFTPMPEFDIGADE
                     DVKYPPKGSYRYLAQVTQLYANSNFGCRSLQDFKKIS"
     gene            complement(507..1187)
                     /locus_tag="VEQ16_08480"
     CDS             complement(507..1187)
                     /locus_tag="VEQ16_08480"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HYP63910.1"
                     /translation="MEQSVKPSRAAPLAAAAPAKPDTGASRRVSRGIMQALEQGRLAP
                     GQRLVETSLAAEYRVGRNAVREAVQWLAALGIIDVSRHRSASLRRLDPAETLDVLEVA
                     EAIIGLLLKAAARNFRPASHEKRLQAALAEIEQADAGAFARARRHFYAALLDIGGNGE
                     LHRLFPAIGLHILFAQYRAALAKPHGLDLFRAMAASVANRDAEHAHTLGRAHIAQLRQ
                     AIPGRDGS"
     gene            1439..>2008
                     /locus_tag="VEQ16_08485"
     CDS             1439..>2008
                     /locus_tag="VEQ16_08485"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYP63911.1"
                     /translation="MSALRRFRIIELAESVSGEYCGKLLADFGASLLKIERLEGSPTR
                     RLGPFAPSGTGPEDSGLFAYLNTNKQSLTLDLSSAAGRAQLATLLADADAVIDDHAPG
                     WLAQMGLDPEKYLETYPQLSLCAITPFGQNAPEDRAHAEDLTVMQASGWGYHTPSAGI
                     ASRPPLKGAGRFQVSYEAGLDAAMCVAACL"
BASE COUNT          358 a          620 c          650 g          380 t
ORIGIN      
        1 atggaaatct tcttaaaatc ctgcaggcta cgacagccga aatttgaatt ggcataaagc
       61 tgcgtcacct gcgcgagata gcggtagctg cccttgggcg ggtatttcac atcctcgtcc
      121 gcgccaatgt cgaattccgg catcggcgtg aagctcggat cgtcgccgat catatccgcc
      181 tgctcggcaa gatcagcgcc gccgccaaga ttattgccca cgccacggat gaccagcacc
      241 ttcacgtcat catcgacatt ggcacgatgg atcagctgtg aataacgcag gcgcgcggcg
      301 atggtgggcg aattcagcgc atccggccgg ttgagcgtga tggtcgcgat ctttgtcttc
      361 gggtccttct cgtacaggat aatctcttcc ggcggcgggc gaacatcgtc ttttttcatg
      421 gcaatttcct tctgtggttg gctgttatgg ttgtgactcg tctcaccggg cggctaggcg
      481 gtattgtgga acaattctgt gccatctcag cttccatcac ggccgggaat ggcttggcgc
      541 agctgcgcga tatgggcgcg gccgagcgtg tgggcgtgct cggcatcgcg gtttgccacc
      601 gaagccgcca tggcgcggaa caaatccagc ccatgcggtt tcgccagcgc cgcccgatat
      661 tgggcgaaga ggatgtgcag cccgatggcg gggaaaagcc tgtgcaattc gccattgccg
      721 cctatgtcca gcagcgccgc gtaaaaatgc cggcgggcgc gggcgaaggc gccggcatcg
      781 gcttgctcga tttcggcgag ggcggcctgt agccgttttt cgtgagaagc gggccggaaa
      841 ttccgtgccg ccgccttcag caaaagaccg atgatggctt cagccacttc cagcacatcc
      901 agcgtctcgg ccgggtccag ccggcgcagc gaggccgagc gatggcgcga gacatcgatg
      961 attccgagtg ccgcgagcca ttgcactgcc tcgcgtaccg cattgcggcc gacacgatat
     1021 tccgccgcca ggctggtctc caccaaacgt tgccctggcg ccagtcttcc ttgctccagc
     1081 gcctgcatga taccgcgcga gacccggcgc gaggcgccgg tatcgggttt ggcaggtgcg
     1141 gcggcggcga gaggtgctgc tctagatggt ttgacagatt gttccacaat ttttgcttaa
     1201 cggacttccc ctgtcggcgg caagactggg gcaagcctcg gccgcgccgg gcggatttcg
     1261 gcaaattgcc gcctaaaccc ttgaccccgc ctatgtcccg tccgccaatg gcggcgcgaa
     1321 atgccgcgtc cggcaggtga gagtgccgcc tgggacaagc cggggccgca gaaaaggcgc
     1381 ggcgcagatg gtacgtcaca cggccatgca agccgccagg ccaatcaggg agtgtccagt
     1441 gtccgcgttg cgccgtttca ggatcatcga gcttgccgag agcgtctccg gtgaatattg
     1501 cggcaagctg ctggccgatt tcggcgccag cctgctgaag atagagcggc tggaaggcag
     1561 tccgacgcgc cggcttggtc cttttgcgcc gagcgggacg gggcccgaag atagcgggct
     1621 gtttgcctat ctcaacacga acaagcagtc cctcactttg gacctgagca gcgcggcggg
     1681 ccgcgcgcag cttgccacgc tgctggcaga tgcggatgcg gtgatcgacg accatgcgcc
     1741 cggctggctg gcgcaaatgg ggctcgatcc ggaaaaatat ctggagacct atccgcagct
     1801 cagcctgtgc gccatcacgc cattcggcca aaacgcaccg gaagaccgcg cccatgccga
     1861 ggacctgacc gtgatgcagg ccagcggctg gggctatcac acgccgagcg ccggcattgc
     1921 cagccgcccg ccgctgaaag gggcggggcg tttccaggtg agctacgagg ccgggctgga
     1981 cgccgccatg tgcgtcgccg cctgcctt
//
LOCUS       DASQCV010000558         3685 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_618276, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000558 DASQCV010000000
VERSION     DASQCV010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_618276"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1186
                     /locus_tag="VEQ16_08490"
     CDS             <1..1186
                     /locus_tag="VEQ16_08490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HYP63912.1"
                     /translation="GFTKYDAAGYIGGIDAARNYVTLPGIPDPGYILDEPGTVPVSVV
                     IRNAYYGLYASDTLNLTPKFSITGSFRFNIANIALHDQNPPDPNAPGGGLTGRHYYEH
                     VNPALGAAYDITSTLMVYGGYAVQNAAPTPAELSCASPEDSCSLANFMSGDPDLKQIV
                     SRTWQAGLRGTAAGPWTSIVTYNADAYLTNTNDEIEFLQSPYNPAGEGYFSNIGNVRR
                     AGFDASLHVDAPRSSLYAIYSYIDATYQSSFIAQSNSPAADVDGNITVQPGDRLPGIP
                     HHIVKFGARYNATPCWTLGIAVTVQSSSYLYGDEANLTPPLPGFAVVDLTTSYRATPA
                     LQLFLNIDNITNAKYYNYGTFSPVGADGGVYVAQAPNYSNPRSYSIAAPIAVYAGAKY
                     SF"
     gene            1333..3438
                     /locus_tag="VEQ16_08495"
     CDS             1333..3438
                     /locus_tag="VEQ16_08495"
                     /EC_number="1.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent dehydrogenase, methanol/ethanol
                     family"
                     /protein_id="HYP63913.1"
                     /translation="MKSGIRMAAHGLLSLAIACAPLTAYAGTQGEAGNWTGHNGDSNE
                     TAFSQLHQITKDNIGKLGLAWSLQLPGESSLEATPVAVDGVLYFTGSYAKVYAVDGAS
                     GKILWTYDPQVWKTNPLKMNFNFSVNRGVAYADGRIFATALDGRLSALDAKTGKLLWT
                     AQTVPATDGQTITGAPRVFAGKVIIGQGGADFGQRGYVTAYDATTGKQLWRFYVVPGS
                     PDQNKGDSAMEMAAKTWSPDFWKTTGGGGGPWDSITYDAELNRIYVGTANASPYDPSA
                     RSPGDGTNLFTASIVALDADTGKYIWHYQVVPRDEWDYDCTQQMTLADLTIDGKPRKV
                     LMQAPKDGFFYVIDRETGKVISAEKLGKVTWASSVDLKTGVPVETPNDRYDVAGKSLT
                     WPASMGIHSWQSMSYSPETGLVYIPTMQLGLSMTKNAPQPGGFQLGPISVLGVSKGPN
                     DDKGTLLAWDPVQQKPVWRVENEYLWNGGALATAGGLVFQGTAEGQFNAYDAKTGTKL
                     WSQGAGGGVIASPMSYTAGGKQYVALLVGYGGQTGAWGSKMNVGWKFGQPRYLLAYAI
                     DGKAPPPPMPNRTLAVHALDDPQLKLDPAQVAMGGGLYIMCGACHGLELISSGAPGPD
                     LRESYIALKPDMFYKTVHDGMLIQAGMPSFPMLSHDQVNALYAYIRAGARAALAGQAG
                     VPTGAPPVNAAASPANAIH"
     gene            complement(3442..>3685)
                     /locus_tag="VEQ16_08500"
     CDS             complement(3442..>3685)
                     /locus_tag="VEQ16_08500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019463139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP63914.1"
                     /translation="GFFQAPNNRTLLAAAPRARAGAAGGMLASARLTGQTLGATFVAI
                     MFAMAAAPSWPLWLGASVAAAGAGVSLSRLTLRPPP"
BASE COUNT          723 a         1231 c         1094 g          637 t
ORIGIN      
        1 cggcttcact aaatatgacg ctgccggcta tattggcggc atcgatgcag cacgcaatta
       61 cgtaacgctg ccgggcatcc ccgatcctgg ctatattctg gacgagccag gcaccgtgcc
      121 agtcagcgtc gtcatccgca acgcctatta cgggctctac gcctcggaca cgctgaatct
      181 cacgccgaaa ttctcaatca ccggcagctt ccgcttcaac atcgccaaca tcgcgttgca
      241 cgaccagaac ccgcctgacc cgaacgcgcc cggcggcggg ctcaccggcc ggcattatta
      301 cgaacatgtc aacccagccc tcggcgcggc ctatgacatc acctccacgc tcatggtcta
      361 tggcggctat gcggtgcaga acgccgcgcc cacgccagcg gaactttctt gcgcaagccc
      421 cgaggattcc tgcagcctgg caaatttcat gtccggcgat cccgatttga agcagatcgt
      481 ctcgcgcacc tggcaggccg gcttgcgcgg cacggcggcc gggccctgga ccagtatcgt
      541 tacctacaac gccgatgcct atcttaccaa cacgaacgac gagatcgagt tcctgcaatc
      601 accttataat ccggcaggcg agggctattt cagcaatatc ggcaatgtcc gccgcgccgg
      661 tttcgatgcg agcctgcatg tggatgcgcc gcgctcgagc ctctacgcca tttattccta
      721 tatcgacgcc acctaccaaa gcagcttcat cgcgcaatcc aacagccccg ccgccgatgt
      781 ggacggcaat atcaccgtgc agcccggcga ccgcctgcca ggcataccgc accacatcgt
      841 caaattcggt gcccgctaca acgccacgcc gtgctggacg cttggcatcg ccgtaacggt
      901 gcagagttcg agctatctct atggcgacga ggcgaatctc accccgcctc taccgggctt
      961 cgcggtggtc gacctgacaa cgagctaccg cgccacgccg gcgctgcagc ttttcctcaa
     1021 catcgataac atcacgaatg caaaatatta taattacggc accttctcgc ccgtcggtgc
     1081 cgatggcggc gtctatgtcg cacaggcacc caattattcg aatccgcgca gctacagcat
     1141 cgcggcgccc atcgccgtct atgccggcgc caaatacagc ttctaaaggc tccgcgcttg
     1201 ccgctataag catgagccct gtcaccgttg cgcataaaat gaagtgccgg cgcgttcccc
     1261 ccttgccaag ggcgcgccgg catgaatgat acataataga tcaatacgtc cgggaataga
     1321 gaggtactca ttatgaaatc cggcatccgc atggcggccc atgggctgct gtctctcgcc
     1381 atcgcctgcg cgcccctcac cgcctatgcc ggcacgcagg gagaagccgg taactggacc
     1441 ggccacaatg gcgattccaa cgagaccgcc ttcagccaac tgcaccagat caccaaggat
     1501 aatatcggca aactaggcct tgcctggtcg ttgcagctcc ctggcgagtc aagcctggaa
     1561 gccacgccgg tggcggtgga tggcgtgctc tatttcacag gcagctacgc gaaagtctac
     1621 gcggtcgacg gtgccagcgg caaaatcctg tggacctacg acccgcaggt ctggaagacc
     1681 aacccgctca agatgaattt caatttctcg gtcaatcgcg gcgtcgccta tgcggatggc
     1741 cggattttcg cgaccgcctt ggacgggcgg ctcagcgcgc tcgatgccaa gaccggcaag
     1801 ctgctttgga cggcgcagac cgtgccggcg accgacggcc agaccatcac cggcgcgccg
     1861 cgcgtgttcg cgggcaaggt catcatcggc cagggcgggg cggatttcgg ccagcgcggc
     1921 tatgtcacgg cctatgatgc caccaccggc aagcagctct ggcgcttcta tgtcgtgccc
     1981 ggctcgccgg accagaacaa gggcgactcg gccatggaaa tggcggcgaa aacctggagc
     2041 ccggatttct ggaagaccac cggcggcggc ggcggcccct gggattccat cacctatgat
     2101 gccgagctca accgcatcta tgttggcacc gccaatgcca gcccctacga tccttcagca
     2161 cgcagccccg gcgatggcac caatctcttt accgcttcca tcgtcgcgct ggatgcggat
     2221 accggcaaat atatctggca ctaccaggtc gtgccgcgtg acgagtggga ttatgactgc
     2281 acccagcaga tgacgctcgc cgacctcact atagacggca agccccgcaa ggtattgatg
     2341 caggcgccga aggacgggtt cttctacgtc attgaccgtg agaccggcaa agtgatctct
     2401 gctgaaaagc tcggcaaggt gacctgggcg tccagtgttg atttgaagac cggcgtgccg
     2461 gtcgagacgc ctaatgaccg gtacgacgtg gccggcaaga gcctcacttg gccggcctcc
     2521 atgggcatac atagctggca atcaatgtcc tacagcccgg agaccgggct ggtctacatc
     2581 cccaccatgc agcttggcct cagcatgact aagaatgccc cgcagccggg cggcttccaa
     2641 cttgggccga tcagcgtgct gggtgtgagc aagggcccca atgacgacaa gggcacgctg
     2701 ctggcctggg acccggtgca gcagaaaccc gtatggcgcg tggaaaacga atatctctgg
     2761 aatggcggcg cgttggcgac ggcgggcggg ctcgtgttcc agggcacggc tgagggccag
     2821 ttcaacgcct atgacgccaa aaccggcacg aagctctgga gccagggggc tggcggcggc
     2881 gtcatcgcct cgcccatgag ctacacggcc ggcggcaagc aatatgtcgc cctgctggtc
     2941 ggctatggcg gccagaccgg tgcctggggc agcaaaatga atgtcggctg gaaatttggc
     3001 cagccgcgct acctgctggc ctatgccatc gatggcaagg cgccgccgcc gcccatgccc
     3061 aaccgcactc tggccgtgca tgcgctggat gatccgcagt tgaagctcga ccccgcccag
     3121 gtggccatgg gcggggggct ctatatcatg tgcggggcct gccatggtct ggagctgatc
     3181 tcatccggag ccccggggcc cgacctgcgc gaatcctaca tcgccctcaa gccggacatg
     3241 ttttacaaaa ccgtgcatga cgggatgctg atccaggcgg gcatgccttc cttcccgatg
     3301 ctgtcgcacg accaggtgaa tgcgctctac gcctatatcc gcgctggcgc gcgggcggct
     3361 ttggccgggc aggcgggcgt gcccaccggc gcgccgcctg tcaacgcggc ggcatcgccg
     3421 gccaacgcca tccattaatg ctcagggcgg cgggcgcagg gtaaggcgtg acaggctgac
     3481 cccggccccg gcggccgcca cactggcgcc cagccagagc ggccaggacg gcgcggccgc
     3541 catcgcgaac atgatggcga cgaacgtggc gccgagtgtc tgcccagtca gccgggcgct
     3601 ggcgagcatc cccccagccg ccccagcccg cgcccgtggc gcggcggcga gcaaagtgcg
     3661 attattgggc gcctggaaaa acccg
//
LOCUS       DASQCV010000559         4568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_284851, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000559 DASQCV010000000
VERSION     DASQCV010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4568
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_284851"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..394
                     /locus_tag="VEQ16_08505"
     CDS             <1..394
                     /locus_tag="VEQ16_08505"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP63915.1"
                     /translation="SVVRPLDPDVRFSNEVPAELVLPLDRAQIYRVLVNLMKNAAEAG
                     AKTIRLFTERDGSVTHLRVSDDGPGLPLRVQDNLFKPFTSSGRYGGTGLGLAIARDLI
                     RANGGDLVLEQTGPKGTVFCMELTASDT"
     gene            562..1128
                     /locus_tag="VEQ16_08510"
     CDS             562..1128
                     /locus_tag="VEQ16_08510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63916.1"
                     /translation="MIMIPLVINPDKVRIGLAGAGAAAARRLAALRAAGTEPVLFTND
                     SELTAGADALPCPPDAASLAGLQLLYIAGLEARDYLPLAQAARAAKVLVNVEDVPEQC
                     DFHAVAEVRRGDLLLTISTGGAAPGLAGVIRQALERCFAPEWAGRVAEVAALRRHWRE
                     EGLPMAEAARRIAALVRERCWLSCPAME"
     gene            1167..1877
                     /locus_tag="VEQ16_08515"
     CDS             1167..1877
                     /locus_tag="VEQ16_08515"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HYP63917.1"
                     /translation="MLDNVTPPSAETILGDAIKRDFAGNIALVSSFGTESAILLHMVS
                     RIDPNLPVIFLDTGKLFPETLAYRDELVKRLGLTDVRAIKPSGSQLAAYDPDGRLWQK
                     DTDLCCAIRKTNPLDEALTGFEAWITGRKRSQSSTRANLQPVETGADGRITVNPLAYW
                     NDEQLEAYFEAHDLPRHPLQAQGYSSIGCAVCTAKPLPGQDKRSGRWAGQAKTECGIH
                     MPRAMTKPDWPEELSFEV"
     gene            complement(2074..2634)
                     /locus_tag="VEQ16_08520"
                     /pseudo
     CDS             complement(2074..2634)
                     /locus_tag="VEQ16_08520"
                     /inference="COORDINATES: protein motif:HMM:NF023354.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3445 domain-containing protein"
     gene            2652..3500
                     /locus_tag="VEQ16_08525"
     CDS             2652..3500
                     /locus_tag="VEQ16_08525"
                     /inference="COORDINATES: protein motif:HMM:NF025885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HYP63918.1"
                     /translation="MLLLGESGVGKTVIARHLHRLATGRDAPFVHVNCGSIPETLFES
                     EMFCYERGAFTGALQAGKRGYIETAKGGTLFLDEIGEIPLASQAKLLKFLEDSTIQPV
                     GSAVSKRIATTVIAATNRDLRAMITQGTFRGDLFYRVANFPVSIPPLRERPDKETLLD
                     AILAKVNEGRKPKLTLSAACRAALLAAKLPGNVRELLGIIDYLDIVADDVATPEHLAE
                     ALLSPDAPLAPTQSASGTLKDLTASFEEQVIRDAIARYGSKREAARQLGIDGATLIRK
                     LRRSGF"
     gene            complement(3508..>4568)
                     /locus_tag="VEQ16_08530"
     CDS             complement(3508..>4568)
                     /locus_tag="VEQ16_08530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP63919.1"
                     /translation="GRLVLMRSISHRQMVAAMAWLTMPALLGPVIGPPLGGFIISFAS
                     WRWVFDINVPVGIIGVIAVTMFIPDIQEEGKGGQLDALGLILSGLAMALLMAGFETTG
                     RHLVPASWTASAYAGGLAACALYLLHARHHPHPAIDLTLFAIPSFAVPALAGTLFRIA
                     VGALPFLLPLMLQLDFGFTPLQSGLTTFTAAAGAILMKPCAPPLLSRFGFRNILIWNG
                     AAAALAMSLCALFEPSWSRPVMNLILFAGGFLRSLQFTALNAIAYGDIPRARMSAATS
                     LYSTIQQLSLTMGIVVGAAMLDLTTSLFHRPTATKPDYAIAFITVSFIGLLSSPLTTR
                     LPRSAGTALSGHRGAKVH"
BASE COUNT          826 a         1325 c         1601 g          816 t
ORIGIN      
        1 ctcggtggtg cggccgctgg accccgatgt gcgcttttcc aacgaggtgc ctgcggagct
       61 ggtgctgccg ctggaccgcg cgcagattta ccgcgtgctg gtgaatctga tgaagaacgc
      121 ggccgaggcc ggggcgaaga ccatccggct tttcactgag cgcgacggct cggtgacgca
      181 tctgcgcgtg tccgatgacg ggccgggcct gccgctgcgc gtgcaggata atctgttcaa
      241 gcctttcacc agttcagggc gctatggcgg cactgggctg gggcttgcca tcgcgcgcga
      301 cctcattcgt gccaatggcg gcgacctggt gctggagcag accgggccga agggaacggt
      361 tttctgcatg gagttaacgg ccagcgatac gtaagcccgc catttccctg gaaaaatata
      421 gaatttcact agggaaaggg cagttctgct ttgccggaaa catagctggc ggataaaaaa
      481 attgtccgcc ggaccgagcg tgcaggagaa aatctttatt ttcgccgttg cattgcaatg
      541 cggggaaaaa ccctattctt gatgatcatg attcctttgg tcatcaaccc ggacaaggtg
      601 cggattggct tggcgggcgc cggggcggcg gcggcgcggc ggctggctgc cttgcgcgcc
      661 gcggggaccg agcccgtgct gttcaccaat gattccgagc tgacggcggg tgcggatgcc
      721 ctgccctgcc cgcccgacgc cgcttcgctg gctgggttgc agcttctcta tattgccgga
      781 ctggaggcac gggactacct gcccctggcc caagcggcac gggcagccaa agtgttggtg
      841 aatgtcgagg atgtgccgga gcagtgcgat ttccatgccg tggcggaagt ccggcgcggg
      901 gatctgctgc tcacaatctc caccgggggg gctgcgcccg gactagccgg tgtgatccgc
      961 caggcattgg agcgctgctt cgcgccggaa tgggccggac gggtggcgga agtggcggct
     1021 cttcgccggc actggcggga agagggcctg ccgatggcgg aagcggcacg gcgcattgcg
     1081 gccctggtgc gggagcgctg ttggctctcc tgcccggcca tggagtaagg aaaatgtttt
     1141 tgtcttcgtc tcaggacacg cagattatgt tggataatgt taccccgccc agcgcagaga
     1201 ccattctggg ggatgcgatc aagcgggatt tcgcgggcaa tatcgcgctg gtttcttcct
     1261 tcggcacgga atccgccatc ctgctgcata tggtgtcgcg gattgacccg aatttgccgg
     1321 tgatcttcct cgatacgggc aagctttttc ccgagaccct cgcttatcgc gacgagctgg
     1381 tgaagaggct tggcctgacg gatgtgcggg cgatcaaacc ctccggctcc cagctcgcgg
     1441 cctacgaccc ggatggccgg ctgtggcaga aggataccga cctgtgctgc gccatccgca
     1501 agaccaaccc gctggatgag gcgctgaccg gattcgaggc ctggattacc gggcgcaagc
     1561 gcagccagtc ctcaacgcgg gccaatctgc agccggtgga gaccggggcg gatgggcgca
     1621 tcaccgtgaa cccgctggcc tattggaacg atgagcagct ggaagcctat ttcgaggcac
     1681 atgacctgcc gcgccatccg ctgcaagccc agggctatag ctccatcggc tgcgccgtgt
     1741 gcaccgccaa accgctaccg gggcaggata agcgctccgg acgttgggcc gggcaggcca
     1801 agacggaatg cggcatccat atgccgcgcg ccatgaccaa gccggactgg cccgaggagc
     1861 tgagcttcga ggtgtaaggc caaggggctc tgccccctgg acccccgctg ggcctgaggc
     1921 ccagacccca ttagctttta aggattgaaa aagggcctgc ctccgtgccg tgacaacggc
     1981 taggtggcag gccctttttc aatccttcat aaaaaagtta tgggggtctg gggcctcagg
     2041 ccccagcggg gtccaggggc ggagcccctg gccttactcc gccccgttgc ccgggctcgt
     2101 cggcgcccat tcgggcagcg tttcggccga gatttccatg cgcggattca cggtgagcgt
     2161 ccagttgagg cggcgcaccg ggtggccgac gcgcaggcgc ttgaggaatt tcaaggcgcg
     2221 gtcgagaagg ccggattcct ggatctgcgg caccgggccg tgccattccg accagctcat
     2281 gccgagattg aagcggatgg aataatccgc gcgctgcgtc gtcatgccgg cggatttata
     2341 cagcgaatca tcgcggtcat cgacgaggac ccattcgccc tgggcctggc gggtggcata
     2401 ttccatcggc tcgtaggaca gcgtggccgg gtcgccgaaa gtgaatgtgt ccttcagctt
     2461 gagcaggcgg ttttcccagg tccaacgcga accttcgcgc gtcagcgtga aatattccgg
     2521 gtagtccttg gcgtaggatt cgaagatcaa ctccagcaga tcccattgcg cctgcatggt
     2581 gtgcggcagc gaggcgtaat gcatgcccgg ctggcgcgcg agaatgcggg cgcggtcgcc
     2641 gtggtgtgcg cgtgctgctg ctgggtgagt ccggcgttgg caagaccgtc atcgcccggc
     2701 atctgcaccg tctggcgaca ggacgggacg cgcctttcgt gcatgtgaat tgcggctcca
     2761 tcccggagac attgttcgaa tcggaaatgt tttgttatga gcgcggcgcc ttcaccggcg
     2821 cgctgcaggc gggcaagcgc ggctatatcg agacggccaa gggcggcact ttgtttctcg
     2881 acgagattgg tgaaatcccg ctggcctcgc aggcaaaatt gctgaaattt cttgaggaca
     2941 gcacgatcca gccggtcggc tcggcagtga gtaagcgcat cgccaccacc gtcatcgccg
     3001 cgaccaaccg ggatctgcgc gccatgatca cacaagggac tttccggggc gatctgttct
     3061 accgtgtcgc caattttccc gtctccatcc cgccgctgcg cgagcggccg gataaggaga
     3121 cattgctgga tgcgattctg gcgaaggtga atgaagggcg caagccgaag ctcaccctct
     3181 ccgctgcttg ccgcgccgcg ctgctggcgg ccaaactgcc cggcaatgta cgcgagctgt
     3241 tgggcatcat cgattatttg gacatcgtcg cggatgatgt ggcgacaccg gaacatctcg
     3301 ccgaggctct gctctcgcca gacgcccccc tcgcccctac ccaatctgcc agcggcacgc
     3361 tgaaagatct gaccgcgtca ttcgaagagc aggtgatccg cgatgccatc gcccgttatg
     3421 gatcgaagcg cgaagccgcc aggcagcttg gcatcgatgg ggcgacgctg atccgcaagc
     3481 tgcgccgttc cgggttctga tacgctctca gtgcaccttc gccccgcgat gcccgctcag
     3541 ggcggtgcct gcgctgcgcg gcaggcgggt ggtgaggggg ctggagagca ggccgatgaa
     3601 gctgaccgta atgaaggcga tggcgtagtc gggcttggtg gcggtcgggc ggtggaagag
     3661 gcttgtcgtg aggtcgagca tggcggcgcc gacgacgatg cccatggtga gggagagctg
     3721 ctggatggtg gaataaaggc tggtggcggc ggacatgcgg gcgcgcggga tgtcgccata
     3781 ggcaatggcg ttgagtgctg tgaattgcag cgagcggagg aagccaccgg cgaagaggat
     3841 gagattcatc accggcctgg accagcttgg ctcgaacaag gcgcagaggc tcatggcgag
     3901 ggccgcggcc gcgccgttcc aaatgaggat gttgcggaag ccgaagcggg agagcagcgg
     3961 cggggcgcag ggtttcatga ggatggcgcc agcggcggcg gtgaaggtgg tgaggccgct
     4021 ttgcagcggg gtgaagccaa aatcgagctg cagcatcagc ggcagcagga aaggcagcgc
     4081 gccgacggcg atgcggaaga gcgtgccggc aagggcgggg acagcgaagc tcgggatcgc
     4141 gaaaagcgtg agatcgatgg ccgggtgcgg atgatgcctt gcatgcagga gataaagggc
     4201 gcaggcggcg agccccccgg cataggcgct cgcggtccag ctggcgggga cgagatggcg
     4261 gcccgtggtc tcgaagccgg ccatgagcag ggccatggcg aggccggaca gaatgaggcc
     4321 cagcgcgtcg agttggccgc ctttgccctc ctcctggatg tccgggatga acatggtgac
     4381 ggcgatgacg ccgatgatgc cgaccgggac attgatgtcg aacacccagc gccaggaggc
     4441 gaaggagatg atgaagccgc cgagcggcgg gccgatgaca gggccaagca gagccggcat
     4501 ggtgagccag gccatggccg cgaccatctg ccggtgggag atggagcgca tcagcacgag
     4561 ccttccga
//
LOCUS       DASQCV010000560         3497 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_618971, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000560 DASQCV010000000
VERSION     DASQCV010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3497
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_618971"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..473
                     /locus_tag="VEQ16_08535"
     CDS             <1..473
                     /locus_tag="VEQ16_08535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HYP63920.1"
                     /translation="EHKADITYLRNGKQQDVSVAVTTMPANPDAAFQQNGGGNSQQGQ
                     ATQGKLGLTLAPLTPDAKNQLNLPDNATGAVITAVTPNSPADVAGLQPGDLLVGVGAT
                     DVNTPSDAVGAITSAQKSGSGAVALRIIRQGQALFVGIDLSGGNSQDQGSGNGQ"
     gene            complement(671..1087)
                     /gene="arfB"
                     /locus_tag="VEQ16_08540"
     CDS             complement(671..1087)
                     /gene="arfB"
                     /locus_tag="VEQ16_08540"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alternative ribosome rescue aminoacyl-tRNA
                     hydrolase ArfB"
                     /protein_id="HYP63921.1"
                     /translation="MIRITRNLQIDERDLEEIFTPASGPGGQNVNKVATAVQLRFNLG
                     ANTTLPEPVKTRLAVLAGKRLSKEGILVIDAEEQRTQLRNREEAREKLFALIREAAVV
                     PKARRATKPTKASQTRRLDSKSRRSDVKRLRRDKDY"
     gene            complement(1116..1415)
                     /gene="rpmB"
                     /locus_tag="VEQ16_08545"
     CDS             complement(1116..1415)
                     /gene="rpmB"
                     /locus_tag="VEQ16_08545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HYP63922.1"
                     /translation="MARRCDLTGKTVQSGNNVSHANNKTRRRFLPNLQVTTLLSDGLG
                     AVRLRLSTRAIRTIEHNGGLDAYLLSNTDAKLTAEGLELKRRLQKALAKKEAKAA"
     gene            complement(1552..1809)
                     /locus_tag="VEQ16_08550"
     CDS             complement(1552..1809)
                     /locus_tag="VEQ16_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63923.1"
                     /translation="MSDRQSPPERELSHAGSVVDKAIEFMVGQNLSELAIASALLGGA
                     MGLLTRVLPDEVVVQILQNAIESIENGEMRSANGEDHAGEA"
     gene            complement(1884..>3497)
                     /locus_tag="VEQ16_08555"
     CDS             complement(1884..>3497)
                     /locus_tag="VEQ16_08555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HYP63924.1"
                     /translation="AIPAALIVGYALVRVSASGFGELRDALFAAVQMRASRVVARRTF
                     EHLHALSMRYHLDRQTGGLSNIILRGTLGIQNVLRLVTFNLLPTIILLVVMIGVLWHV
                     LGIGYALVTFVAIGAYIAFTFTFTAWRTKFRRAMNETDNEAQTKAIDSLLNFETVKYF
                     GNEEHESQRFDQSLARFEAASVKSQVSLNGLNIGQALIISVAMAVVMLMAANDVAYHH
                     MTVGRFVMVNTYLLQISIPLNFLGFTYLTLNQGLIDMEQMFSLLRVNREVMDKPEALA
                     LERHGAPAEIRFEDVHFAYNPDRQILKGISFTAAPGKKIAIVGPTGSGKSTISRLLFR
                     FYDVTGGSVLVDGHDVRDVTQGSLRGAIGVVPQDTVLFNDTIFYNIAYGRPGATVEEI
                     EQAARFAQIHDFVISLPQGYKTRVGERGLKLSGGEKQRVAIARTILKDPRILILDEAT
                     SALDTHTEQEISAALRRVSFDRTTLVIAHRLSTVTDADEILVLRDGLIVERGPHASLL
                     ALDGIYAGMWAAQQAEGEEEENALPEVAE"
BASE COUNT          639 a         1109 c         1121 g          628 t
ORIGIN      
        1 ccgagcacaa ggccgacatc acctatctgc gtaacggcaa acagcaggat gtcagcgtgg
       61 cggtgacgac catgccggcc aacccggacg ccgccttcca gcagaatggc ggcggcaaca
      121 gccagcaggg ccaggccacg cagggcaagc tcggcctcac tttggccccg ctcaccccgg
      181 atgcgaagaa ccagctcaac ctgcccgata acgcgaccgg cgcggtgatc acggcggtga
      241 cgccgaactc gccggcggac gtggccgggc tgcagccggg cgacctgctg gtgggcgtgg
      301 gcgcgaccga cgtgaacacc ccgtccgacg cggtgggcgc catcacctcc gcgcagaaat
      361 ccggctcggg cgccgtggcg ctgcgcatca tccgccaggg ccaagcgctg ttcgtcggca
      421 tcgacctcag cggtggcaac agccaggacc agggtagcgg taacgggcag taagaaaggc
      481 cagggctctg ccctggaccc gctggggcct gaggccccag acccccgata gtttgggatt
      541 gaaaaagggc cctgccacca agccgtttca cggcacggag gcagggccct ttttcaatcc
      601 ttaaaagcta atggggtctg ggcctcaggc cagcggggtc caggggcgga gcccctggcc
      661 ttcctttttc tcaataatcc ttgtcccggc gcagccgctt cacgtcgctg cggcgggatt
      721 ttgagtccag tcgcctggtc tgtgaggctt tggtcggctt ggtcgcgcgg cgggcttttg
      781 gcaccacggc ggcctcgcgg atgagggcga acagcttctc ccgcgcctct tcgcggttgc
      841 gcagctgggt gcgctgctcc tcggcatcga tgacgaggat accctccttg ctcaaccttt
      901 tgccggccag gacggcgagg cgagtcttca caggctcggg gagggtggtg ttggcgccga
      961 ggttgaagcg caactgcacg gcagttgcga ccttgttcac attctgcccg cccggcccgg
     1021 aggcgggcgt aaaaatttcc tccagatcgc gctcgtcgat ctggaggttc cgggtaattc
     1081 tgatcatcac gagcctggtc tccaggcccg gcgctttaag cggccttggc ttctttcttc
     1141 gccagcgcct tctgcaggcg gcgcttcagc tccagccctt ccgcggtcag cttggcgtcc
     1201 gtattggaca gcagataggc gtccagcccg ccattatgct cgatcgtgcg gatcgcgcgg
     1261 gtggagaggc gcaggcgcac ggcgcccagc ccgtcggaca gcagcgtggt gacctgcagg
     1321 ttgggcagga accggcggcg ggtcttgtta ttggcgtggc tgacattatt gccagactgc
     1381 acggtctttc cggtcaggtc gcaacggcgg gccataggtc tatcctcaac atacgcaaaa
     1441 agagggctgg cgcgggccag ccccggaatt ggaagcccgg cttatgggca aaagagtcaa
     1501 aaacgtcaag agaccggaga gcataagtga ctcgctccgg atttaccggg cttaagcttc
     1561 tccggcgtgg tcctccccgt tcgcgctgcg catctcgcca ttctcgatgc tctcgatggc
     1621 attctgcaga atctgcacca ccacctcatc cggcagcaca cgggtcagca gacccatggc
     1681 accgcccagc agggcggagg caatggccag ctcggagaga ttctgcccca ccatgaattc
     1741 aatcgccttg tccacgaccg agccggcatg gctcagttca cgttcgggcg gggactgtct
     1801 gtcgctcatt tggtcttcca tcaatactca actgtcatgt tctgtcatgt aatgcgccgg
     1861 atgggccggt accattgccg cgttcactcc gctacctcgg ggagcgcatt ttcttcctcc
     1921 tccccctcgg cctgctgcgc cgcccacatg ccggcataaa tgccatcaag cgccagcagg
     1981 ctggcatggg ggccgcgctc cacgatcagc ccgtcacgca gcaccaggat ctcatccgca
     2041 tcggtgacgg tggagagccg gtgggcgatg accaaagttg tgcggtcgaa cgagacgcgg
     2101 cgcagggcgg cggagatttc ctgctcggta tgggtgtcca aagccgaggt cgcctcgtcc
     2161 aggatgagta tgcgcgggtc cttgaggatg gtgcgcgcta tggccacacg ctgcttctcg
     2221 ccgcccgaga gtttcagccc gcgctcgccc acccgcgtct tgtagccctg cggcagcgag
     2281 atgacgaaat catggatctg cgcgaagcgc gcggcctgct cgatttcctc gaccgtggcg
     2341 ccggggcggc cataggcgat attgtagaag atggtgtcgt tgaacagcac cgtatcctgc
     2401 ggcaccacgc cgatggcccc gcgcagcgag ccttgtgtga cgtcgcgcac atcatgcccg
     2461 tccaccagca ccgacccgcc cgtgacatcg tagaagcgga acagcaggcg cgagatggtg
     2521 gatttgcccg agccggtggg cccgacgatc gcaattttct tgcccggcgc cgcggtgaag
     2581 ctgatgccct tcaatatctg ccggtccgga ttataggcga aatgcacatc ctcgaacctg
     2641 atctcggccg gcgcgccatg gcgctccagc gccagcgcct ccggcttgtc catcacctcg
     2701 cggttgacgc gcaggagcga gaacatctgc tccatgtcga tgaggccctg attcaaggtg
     2761 agataggtga agccgagaaa attcagcggg atggaaatct gcagcagata ggtgttcacc
     2821 atcacgaagc ggccgaccgt catgtggtga tacgccacat cattcgccgc catcagcatc
     2881 accaccgcca tggcgacgga gatgatcagc gcctggccga tattgagccc gttcagcgag
     2941 acctgcgact tgaccgaggc agcttcaaag cgcgccaggc tctggtcgaa gcgctgggac
     3001 tcatgctcct cattgccgaa atatttgacg gtctcgaaat tcaggagcga atcgatggct
     3061 ttcgtctgcg cctcgttatc cgtctcattc atggcgcggc ggaatttcgt ccgccaggcc
     3121 gtgaaggtga aggtgaaggc gatataggcg ccgatggcga caaaggtgac cagcgcatag
     3181 ccaatgccca gtacgtgcca cagcacgccg atcatcacga caagcaggat gatggtcggc
     3241 agcaggttga aggtgaccag gcgcagcacg ttctggatgc cgagcgtgcc gcggagaatg
     3301 atgttggaga gcccgcccgt ctgccggtcc agatggtagc gcatggagag cgcgtgcaga
     3361 tgctcgaagg tgcggcgcgc gacgacgcgc gaggcgcgca tctgcaccgc ggcgaagagc
     3421 gcgtcgcgca gctcgccaaa gcccgaggcg ctgacgcgca ccagcgcata gccgacgatg
     3481 agcgccgccg ggatggc
//
LOCUS       DASQCV010000561         2545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3271402, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000561 DASQCV010000000
VERSION     DASQCV010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3271402"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VEQ16_08560"
     CDS             <1..364
                     /locus_tag="VEQ16_08560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63925.1"
                     /translation="AAAGSMVAGTIQGWRAADAGLVALALFGAFIGMELAMYLTYTSV
                     GMPYIAGVSPRYFLLLMPFFVFLLPWAGWIVSRLPGLARLTALEQGWFALPAMAMAAV
                     NIYVLPVYIFHLFRMPWP"
     gene            364..486
                     /locus_tag="VEQ16_08565"
     CDS             364..486
                     /locus_tag="VEQ16_08565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63926.1"
                     /translation="MRRLLPSAGRALARLPHLAPGWYNPARIAMAGANAIALPA"
     gene            577..1455
                     /locus_tag="VEQ16_08570"
     CDS             577..1455
                     /locus_tag="VEQ16_08570"
                     /inference="COORDINATES: protein motif:HMM:TIGR03302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HYP63927.1"
                     /translation="MTKFSSGLTRTALLSLALGLGGCSSFLNSATKEGDFPQGSVPPP
                     DQAYATAVHALDKGDDERAAKDFEVVEENYPYSTWSTHAELLVGYAQYKNMDYDDAIS
                     SLNHFIQLHPENEETAYAYYLKALCYYEQIDDVQRDQTATYEAISALNDVIGRYPETA
                     YAHDARIKLRLANDRLAGHDMVIGRFYQKQHLYGAAVGRYQDVAANFQQTTYVPEALE
                     RLVEVYLDLGLPDEAVRAASVLGYNYPGNAWYQTAYNKLQDHGLTNLAEQVQAANGSE
                     APPPRPLQTHHWFWPF"
     gene            1462..>2545
                     /locus_tag="VEQ16_08575"
     CDS             1462..>2545
                     /locus_tag="VEQ16_08575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYP63928.1"
                     /translation="MLQLLSIRDVVLIERLDLHFCSGLTVLTGETGAGKSILLDSLGL
                     ALGARADSGLVRGGAEQAVVAASFAVADGHAALALLAEQGLDSGSEILVRRIVGRDGR
                     SRALVNDQPVSVGFLKNLAAQLIEIQGQHEQVGLADPANHILLLDSYGVPAGAREAVA
                     EAHKDWRKAGAKLAEAEKRIEETAREEDFLRHASDELSALNPVAGEEEQLAAERLRLQ
                     AGERRAEAIAAAIAELRPKDRRQGGPAAALRGAARALARITVPAGSVNPAGPAMAAVE
                     RAEVALAEAEDFLERMAAAEEDDPRALEAVEERLFALRAVARKHGVQVADLADFYADL
                     RARLAALESGVADIATLTKEVTRLRAD"
BASE COUNT          411 a          788 c          893 g          453 t
ORIGIN      
        1 cgccgccgca ggcagcatgg tcgccggcac gatacagggc tggcgggcgg ccgatgccgg
       61 cctggtcgcg ctggcgctgt tcggcgcctt catcggcatg gagcttgcga tgtacctgac
      121 ctacaccagt gtcggcatgc cttacattgc gggcgtaagc ccccggtatt tcctgctgct
      181 catgccgttt ttcgtcttcc tgctgccctg ggcgggatgg atcgtcagcc gcctgcccgg
      241 cctggcgcgg ctcacggcgc ttgagcaagg ctggttcgcc ttgcccgcca tggctatggc
      301 cgccgtgaat atctacgtcc tgccagtcta tattttccac cttttccgca tgccttggcc
      361 ctgatgcgcc gcctgctgcc ctcggccggg cgggcgctgg cgcggctgcc acacctcgca
      421 ccaggctggt ataatcctgc ccgcatcgcc atggccggcg ccaatgccat cgccctgccg
      481 gcctaaattt ccatttgttt catatgcccg ggccatagcc cggcgccgcg ccctatggct
      541 tcatgttcct ggattaactg ctataagccg cacgcgatga caaaattttc ctccggcctg
      601 acccgcactg ccctgctctc tctagccttg ggccttggcg gctgttcctc cttcctcaac
      661 agcgccacca aggagggtga cttcccgcaa ggcagcgtcc cgccgccgga ccaggcctat
      721 gccacggccg tgcatgcgct cgacaaaggc gatgacgagc gcgcggcgaa ggatttcgag
      781 gtggtggagg agaattatcc ctattccacc tggtcgaccc atgccgagct gctggtgggc
      841 tacgcccagt acaagaatat ggattatgac gacgcgatca gctcgctgaa ccatttcatt
      901 cagctgcatc cggagaatga ggaaacggcc tacgcctatt acctgaaggc tctgtgctat
      961 tacgagcaga tcgacgatgt gcagcgcgac cagacggcga cctatgaagc catctcggcg
     1021 ctgaacgacg tgatcggccg ctatcccgag accgcctatg cgcatgatgc ccgcatcaag
     1081 ctgcgcctcg ccaatgaccg tctcgccggg catgacatgg tgatcgggcg cttctaccag
     1141 aagcagcatc tctatggcgc ggcggtgggg cgctaccagg atgtggcggc gaatttccag
     1201 cagaccacct acgtgccgga agcgctggaa cggctggtgg aagtgtatct ggatctcggc
     1261 ctgccggatg aggcggtgcg cgcggcctcg gtgctgggct ataattatcc tggcaatgcc
     1321 tggtaccaga cggcctataa caagctgcag gaccatgggc tgacgaacct agctgagcag
     1381 gtgcaggcgg ccaacggctc ggaagcgcca ccgccgcggc cgctgcagac gcatcactgg
     1441 ttctggccct tctaggtcag gatgctgcag ttactctcga tccgcgatgt ggtgttgatc
     1501 gagcggctgg atctgcattt ctgctccggg ctgacggtgc tcaccggcga aaccggggcg
     1561 ggcaagtcga tattgctgga tagcctcggc ctcgcgctgg gggcacgggc cgatagcggg
     1621 ctggtgcgcg gcggcgccga gcaggccgtg gtggcggcga gttttgccgt ggcggacggc
     1681 catgcggcct tggcgctgct ggccgagcag ggactcgatt cggggagcga aattctggtc
     1741 cggcgcattg tggggcgcga cgggcgctcg cgcgcgctgg tgaatgacca gccggtgagc
     1801 gtcgggtttc tgaaaaatct cgcggcgcag ctcatcgaga tccagggcca gcatgagcag
     1861 gtggggctgg ccgacccggc gaaccatatt ctgctcctcg atagctacgg cgtgccggcc
     1921 ggggcgcgcg aggcggtggc cgaggcgcat aaggactggc gcaaggcggg cgcgaagctg
     1981 gccgaggcgg aaaaacgcat cgaggaaacg gcgcgggaag aggattttct gcgccatgcc
     2041 tccgacgagt taagcgccct gaacccggtg gcgggcgagg aggagcagct ggccgccgaa
     2101 cggctgcggc tgcaggccgg cgagcgccgg gccgaggcaa ttgccgccgc gattgccgag
     2161 ctgcgcccga aggaccggcg ccagggcggc ccggcggctg ccttgagggg tgctgcacga
     2221 gcgctggcgc gcatcaccgt gccggcgggc agcgtgaacc cggccgggcc cgccatggcg
     2281 gcggtggaac gggcggaagt ggcgctggcc gaggccgagg attttctcga gcgcatggcg
     2341 gcggccgagg aggatgatcc gcgtgcgctg gaggcggtgg aggaaaggct gttcgcgctc
     2401 cgggcggtgg cccgcaaaca tggggtgcag gtggcggacc tggcggattt ttatgccgat
     2461 ctgcgcgcgc ggctggcggc gctggagagc ggcgtagcgg atatcgccac gctgacgaag
     2521 gaagtgacgc ggctgcgggc ggatt
//
LOCUS       DASQCV010000562         2409 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3271443, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000562 DASQCV010000000
VERSION     DASQCV010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2409
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3271443"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..1512
                     /locus_tag="VEQ16_08580"
     CDS             151..1512
                     /locus_tag="VEQ16_08580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP63929.1"
                     /translation="MPMPETLPEKAVPAAIAFFLALALLPAIMFGLLSGLGGLKPGHA
                     LLAWGIYGMVATVFGLALGRDLVVMTRLLRALRTDPETLPDVTALFVPGMRALGEEAV
                     RLVQAERLARARGLALAAEDRALVERLPDPLLKLDGEGKMLWRNDSAVSAFGSETAAL
                     LRHPDVRAAFAEAVAQAQPVRREIVLVAPMARDVEVTLIPVGEPVYVLVNDRTRERAL
                     EKSRADFVANSSHELRTPLASLIGFIETLRGPAADDPEAQQRFLGIMAEQAGRMQRVI
                     ADLLSLSKIEISEHSPPKEVLHVPPVIERIAAAMEPMLRDAAIQLRLDVPPNLPRIPA
                     DADQLAQLFTNLLDNAVKYGKRGGEIKLSASAAPDTRFEPGGVVVSVADDGMGIAREH
                     LPRLTERFYRVDKGRSRAVGGTGLGLAIVKHVVNRHRGRLLVDSELGKGTIFTVWLPG
                     VAK"
     gene            1639..2220
                     /locus_tag="VEQ16_08585"
     CDS             1639..2220
                     /locus_tag="VEQ16_08585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63930.1"
                     /translation="MSDTAASRAKNSVHVVYGQYHKFKLIPIMEHHAQFLRAGPVTFG
                     IEGRVLGAPQGVVGEIGVSLHVFNADRSEEWLRFDCFDRGPHYYYVLYHLGHNIVWGY
                     DPAANGPMRPWALNAVRTRLPAMLRKSGAAALAAAVEREGIDDAVLDEVEAAMIEADR
                     CIRPGSLKMIEEGIAWMARWKRLHPQFNTVDDD"
     gene            complement(2217..>2409)
                     /locus_tag="VEQ16_08590"
     CDS             complement(2217..>2409)
                     /locus_tag="VEQ16_08590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase"
                     /protein_id="HYP63931.1"
                     /translation="IRPQIWPNLRIVEIGDAKLGRGGTMVAALRNLYRTQIERDPNWV
                     DEIRAEGRGREINLAFSQA"
BASE COUNT          385 a          766 c          805 g          453 t
ORIGIN      
        1 caccgccccg gccggcttca ccggcacgga cgggctggtg gtgttcaatg cggatggcag
       61 cgtgaagcgc ggcctcgctg tgttctccat cgcctccggt gcgcccacca tcacctcgcc
      121 cgcacccagc acgctcagcc agaccccctg atgcccatgc cggaaaccct gcccgagaaa
      181 gccgtgccgg ccgccatcgc cttcttcctg gcgctggcgc tgctcccggc catcatgttc
      241 gggctgctct ccgggctggg ggggttgaag ccgggccatg cgctgctggc ctggggcatt
      301 tacggcatgg tggccaccgt gttcggcctc gctttggggc gcgacctagt ggtgatgacg
      361 cgcctgttgc gcgccttgcg caccgacccc gagacgctgc ccgacgtcac cgctttgttc
      421 gtgcccggca tgcgcgcgct gggtgaggag gcggtgcggc tggtgcaggc cgagcgcctc
      481 gcccgcgccc gcggcctggc gctggcggcc gaggaccgcg ctttagtgga acgcctgccc
      541 gacccgctgt tgaagctgga tggcgaaggc aagatgctgt ggcgcaatga cagcgcggtg
      601 agcgccttcg gtagcgagac cgcggccttg ctgcgccacc cggatgtgcg cgccgccttc
      661 gccgaggctg tcgcccaggc ccagccggtg cggcgcgaga tcgtgctggt cgctcccatg
      721 gcgcgggatg tggaagtgac gctgatccca gtgggcgagc ctgtctatgt gctggtgaat
      781 gaccgcaccc gcgagcgcgc tttggagaaa tcgcgcgccg atttcgtggc caattcctcg
      841 cacgaattgc gcacgccttt ggccagcctc atcggcttca tcgagacgct gcgcggcccc
      901 gccgcggatg atccggaggc gcaacagcgt ttcctcggca tcatggccga gcaggccgga
      961 cgcatgcagc gcgtgatcgc ggatctgctg tcactctcga aaatcgagat ttccgaacat
     1021 tcgccgccga aggaagtttt gcacgtgccg ccggtgatcg agcgcatcgc cgctgccatg
     1081 gagccgatgc tacgcgacgc cgcgatccag ctgcgtctgg acgtgccgcc gaatttgccg
     1141 cgtattcccg ccgatgccga ccagctcgcc cagcttttca cgaatttgct ggataatgca
     1201 gtaaaatatg gaaaacgcgg cggcgagatc aaactcagcg cttccgccgc gccggacacg
     1261 cgcttcgaac cgggcggggt ggtggtttcg gtggccgacg atggtatggg tatagcccgc
     1321 gaacatctgc cgcgcctgac ggaacgtttt tatcgcgtgg acaaagggcg ttcacgcgcc
     1381 gttggcggca ccgggctggg gctggccatc gtgaagcatg tggtcaaccg tcatcgcggc
     1441 cggttgctgg tggacagcga gctgggcaag gggacgattt tcaccgtttg gctgccgggg
     1501 gtggcgaagt agcccctgat ttgcatgtgc gaacacagag tcgataaatt gacttttctt
     1561 tgagtcgttc tagtgtcgtg ccccccctta tggcgccgtg atggccgaag ggacggcatt
     1621 cgtgcccaag gagggagcat gagcgacaca gcagcatcac gcgcgaaaaa ttccgtccat
     1681 gtggtctacg gccagtacca caagttcaag ctcatcccca tcatggagca tcacgcccag
     1741 ttcctgcgcg ccggcccggt cacgttcggc atcgaggggc gtgtgctcgg cgcgccccaa
     1801 ggtgttgtgg gcgagatcgg cgtcagcctg catgtcttca acgccgaccg cagcgaggaa
     1861 tggctgcggt tcgattgttt tgatcgcggc ccgcattatt actatgtcct gtaccatctc
     1921 ggccataaca tcgtctgggg ctacgacccg gcggccaacg ggccgatgcg gccctgggcg
     1981 ctgaatgcgg tgcgcacgcg cctgccggcg atgctgcgca agagcggtgc cgcggcgctg
     2041 gcggcggcgg tggaacgtga gggtattgat gacgcggtgc tggatgaggt ggaagcggcg
     2101 atgatcgagg ccgaccgatg catccgccct ggctcactca agatgatcga ggaaggcatt
     2161 gcctggatgg cgcgctggaa gcgcctccac ccgcaattca atactgtcga tgacgattag
     2221 gcttgcgaaa acgccagatt gatctcccgt ccgcgccctt cggcccggat ctcatccacc
     2281 cagttcgggt cgcgctcaat ctgtgtgcgg tacaggttgc gcagagcggc aaccatcgtg
     2341 ccaccgcggc caagcttcgc gtcgcctatc tcgacgatgc gcagattcgg ccagatttgc
     2401 gggcggatt
//
LOCUS       DASQCV010000563         1545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2444035, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000563 DASQCV010000000
VERSION     DASQCV010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2444035"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..531
                     /locus_tag="VEQ16_08595"
     CDS             <1..531
                     /locus_tag="VEQ16_08595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63932.1"
                     /translation="ILRQEYADLRMEWQRRSTALDDEKRSLAEKSLALEQFRQETITH
                     SDNSPAAEHRVDRLRRNWLIQNAAAIRAVAEERKVLETELANLEKRFALLQKRGDELI
                     AAETTFAEKHAAWEHRQALWNARQAQIEQELKMAHAQRQSAEQQLARMNDEVERIART
                     LLDEPEAPGLFSDQAA"
     gene            complement(622..1533)
                     /locus_tag="VEQ16_08600"
     CDS             complement(622..1533)
                     /locus_tag="VEQ16_08600"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: protein motif:HMM:NF005574.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HYP63933.1"
                     /translation="MPDLAVTLGRLHLKNPILVASGTFGYAREMAGVVDFAKLGGIIP
                     KTETKQPRAGNPPPRTVETPSGMLNAIGLDNDGIDHFIAHHLPYLRTLPTAVIANIAG
                     KNEAEFIEMAGQIGRAQGLAALELNLSCPNVAGGVDFATDPAVTRRVVKEARAVCPLP
                     IIAKLTPNVTDIVPIARAAAEGGADAVSLVNTFIGMAIDWRRQRPILGNVTGGLSGPA
                     IKPLALRLVWQVARQVNIPVIGIGGIASVDDVMEFLIAGASAVQIGTANFYDPTVSQR
                     VVEQLPDALGQLGANSVQQVIGSLKVG"
BASE COUNT          325 a          493 c          470 g          257 t
ORIGIN      
        1 attctgcgtc aggaatacgc cgacctgcgc atggaatggc agcggcgcag caccgccctg
       61 gatgacgaaa agcgcagcct cgccgaaaaa tcgctggccc tggaacaatt ccgccaggaa
      121 accatcactc actcggacaa cagccccgcc gccgagcacc gcgtcgaccg cctgcggcgg
      181 aactggctga tccagaacgc cgccgccatc cgcgccgtgg ccgaggaacg caaagtcctg
      241 gagaccgagc tggccaacct ggagaagcgc ttcgccctct tgcaaaaacg aggcgacgag
      301 ctgatcgccg ccgagaccac cttcgccgaa aagcatgccg cctgggaaca caggcaggcc
      361 ctctggaacg cccgccaggc ccagattgag caagaattga aaatggctca cgcccagcgc
      421 cagagcgccg agcaacaact cgccaggatg aatgacgaag tggaacgcat cgcccgaacc
      481 ctgctggacg agcccgaggc gccgggactg ttcagcgatc aggccgcgtg aacagaatgg
      541 ttagccgcca cgcgaagtct tcggagcgga gcgcgaacct gtggaacacc agcgctccgc
      601 tccgaagact tcgcgtcgcg gctaacccac tttcaaactc ccgatcacct gttgcacact
      661 gttcgcaccc agttgcccca gggcatccgg caattgttcg accacgcgct gcgaaacggt
      721 tggatcatag aagttggcag ttccgatctg cacggcgctg gctccggcaa tcaggaattc
      781 catgacatcg tccacgctgg cgatgccgcc gatgccgatg accgggatgt ttacctgccg
      841 ggcgacttgc cacaccagtc gcagcgcgag tggtttgatg gccggcccgc tcagcccgcc
      901 ggtgacattg ccgaggatgg gccgttgccg ccgccaatcg atggccatac caatgaaggt
      961 gttcaccagc gaaaccgcat cggcccctcc ctccgccgcc gcccgagcga tggggacgat
     1021 gtccgtcacg ttgggggtca gcttggcgat gatgggcaag ggacagacag cacgagcttc
     1081 tttgaccact cgcctggtaa ctgccgggtc cgtggcgaaa tcgacgccgc cggccacgtt
     1141 aggacaagaa agattcaatt ccagcgcagc caaaccctgt gcgcggccga tctgcccggc
     1201 catttcaata aattcggctt cattcttgcc ggcaatgttg gcgatgacgg ccgtcggcag
     1261 tgttcgcaga tacggcaaat gatgtgcgat gaaatgatcg atgccgtcat tgtccaggcc
     1321 gatggcgttg agcatgccgg agggagtttc gacggtccgc ggcggcggat tgccggcccg
     1381 tggctgcttc gtctccgtct tgggaatgat gccgccaagc ttggcgaaat cgaccacgcc
     1441 ggccatctcc cgggcgtaac cgaacgtgcc ggatgcgacc aggatgggat ttttcagatg
     1501 caggcggcca agagtgacgg caaggtctgg cataatggtc gtttt
//
LOCUS       DASQCV010000564         1951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2774771, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000564 DASQCV010000000
VERSION     DASQCV010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1951
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2774771"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1205)
                     /locus_tag="VEQ16_08605"
     CDS             complement(<1..1205)
                     /locus_tag="VEQ16_08605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HYP63934.1"
                     /translation="MARFRYRVLERGGEVLTGISEGASEADIAAQLQKSGAMVLSVSP
                     AMRGADILSLQLGGTGALRRTELADAMRELASMLGAGQDLDQALRLMAEEAPNKRVGA
                     VLGRVREKVRDGVPLATALQSEPRSFPRLTIGLIRAGEAGGDLANTLERLAGLLERQR
                     SLAAAVQSAMIYPALLLVAAICSIVLLLTQVLPQFVPLFAENGVALPASTAFLLAAGN
                     AVSAYGLYVLVALGVLALAARQVLQYPGPRLAADGALLRLPLIGGLNREVLGARFART
                     LGMLLVNGVPLLGALAIAQEVLGNKAAQGAVQAASESAKTGQGMAVALGRSGIFPARL
                     VHLLRLGETTAQLGPLALRAADIHEERTRIALQRLVALLVPAITVLMGAAVAGIVSSL
                     LLAMLSLND"
     gene            complement(1205..>1951)
                     /locus_tag="VEQ16_08610"
     CDS             complement(1205..>1951)
                     /locus_tag="VEQ16_08610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018308561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HYP63935.1"
                     /translation="APNGIMLVTGPTGSGKTTTLYTALLSLNAAETKIITVEDPIEYQ
                     LQGINQIQVRPQIGLGFATLLRSIVRLDPNVIMVGEIRDLETAEISARAALTGHLVLS
                     TLHTNSAAAAITRLRDMGMEDYLLAAVLRGVLAQRLVRRLCDACKTEAPLPPALRERH
                     NLASETMCRPQGCPACRNTGYRGRQAIAEFLLPDAEIERLIATRAGQAEIEQAAVARG
                     MKTLLQTGMEAVARSETSVEEVLRAVRAVE"
BASE COUNT          348 a          673 c          636 g          294 t
ORIGIN      
        1 atgtcattga ggctgagcat ggcaagcagg agcgacgaca cgattccagc caccgccgcg
       61 cccatcagca cagtaatggc gggtacgagc agcgccacca gccgttgcag cgcgatgcgc
      121 gtgcgctcct catggatgtc agcggcacgc aaagcgagtg ggccgagctg cgcggtggtc
      181 tcacccagcc gcagcagatg aacgagccgc gcgggaaaga ttccgctccg gcccagcgcc
      241 acggccatac cctggccggt cttggcactt tccgacgccg cctgcaccgc gccctgtgcg
      301 gctttgttgc ccagtacctc ctgggcgatg gcgagtgccc ccagcagcgg cacgccattg
      361 acgagcagca tgcccaaggt acgggcgaat cgcgcgccga gaacttcccg gttcaacccg
      421 ccaatgagtg gcaggcggag cagcgcccca tctgccgcca ggcgcggccc tggatattgc
      481 agcacttgcc gcgccgcgag cgccagcacg ccgagcgcca ccagcacata gagcccatag
      541 gcggacaccg cattgccggc ggccagtaaa aaagccgtgg aggcgggcag ggccacgcca
      601 ttctcggcga atagcggcac aaactgcggc agcacctggg tgaggagcaa aacaatggag
      661 cagatggcgg ccaccagcag cagggcaggg tagatcattg ccgactgcac cgcggcggca
      721 aggctgcgct ggcgctccag cagcccggcc agacgctcca gcgtgttggc cagatcgccc
      781 ccagcctcgc cagcgcgaat cagcccgatg gtgaggcgcg gaaaagagcg cggctcgctc
      841 tgcaaggcgg ttgccagcgg cacaccgtcg cgcaccttct cccgcacccg gcccagcacc
      901 gcgccgacgc gcttgttcgg cgcctcttcc gccatgagcc gcaacgcttg gtccagatcc
      961 tgtccggccc ccagcatgct ggccaattcg cgcatggcat cggccagctc cgtgcggcgc
     1021 agcgcaccgg tgccgccgag ctgaagcgaa agaatatccg ccccgcgcat ggccgggctg
     1081 acggacagca ccatggcgcc gctcttctgc agctgcgcgg cgatatcggc ctcgctggcg
     1141 ccctcgctga tgcctgtcag cacctcgcct ccgcgctcca gcacccggta gcggaagcgt
     1201 gccattattc cactgcccgg acggcgcgca gcacttcctc gacgctggtc tcgctacgcg
     1261 ccacggcctc catgccggtc tgcagcaagg tcttcatgcc gcgcgccacc gccgcctgtt
     1321 caatttccgc ctgtccggcg cgggtggcga tgagacgctc gatttcggca tcagggagca
     1381 gaaattcggc aatggcttgg cgcccgcgat agccggtatt gcggcaggcg ggacagcctt
     1441 gcggccggca catcgtctcg ctggcaaggt tgtggcgctc acgcagggca ggggggagcg
     1501 gcgcctcggt cttgcacgcg tcgcacaggc gccgcaccag gcgctgcgcc agcaccccgc
     1561 gcagcacagc ggcgagtaaa taatcctcca tccccatatc gcgcaggcgg gtaatggcgg
     1621 cggcggcgga attggtgtgc aaagtggaga gcaccaggtg ccccgtcaaa gccgcgcgag
     1681 ctgatatctc ggcggtttcc aaatcacgga tttcacccac catgatgaca ttgggatcaa
     1741 gccgcacgat cgagcgcagc agcgtcgcga agccgagccc gatctgaggg cgcacctgga
     1801 tctggttgat gccttgcaac tggtattcga tcgggtcttc gaccgtgatg atcttcgtct
     1861 cggcggcgtt cagggagagc agggccgtat aaagcgttgt cgtcttgccc gagccggtcg
     1921 gaccggtgac aagcatgatg ccgttgggcg c
//
LOCUS       DASQCV010000565         3350 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1781893, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000565 DASQCV010000000
VERSION     DASQCV010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3350
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1781893"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..592)
                     /locus_tag="VEQ16_08615"
     CDS             complement(<1..592)
                     /locus_tag="VEQ16_08615"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP63936.1"
                     /translation="MPYRLLLATAASFFSAGSFWMFLPLLSLSLRAEGASDALVGLMS
                     GLPWVGLLAVSVFIPHIIHRIGLQRMVLAGLTLAIAAYIGFASTRAIPLWAGLSLLLG
                     ISLGLRWAGMDTWINGSVPEHLRGRLIGAYELILSGSMAAGPGALALLGSHGPEAFLL
                     AAAVVLAAMALLLAAGREARGIAEPPGATRAWHVLRT"
     gene            complement(597..2324)
                     /locus_tag="VEQ16_08620"
     CDS             complement(597..2324)
                     /locus_tag="VEQ16_08620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYP63937.1"
                     /translation="MSQNVSTLHLIRRLWRQHVSHFRGRIALIIVATLIMSGTTALYP
                     AIIDWAFTLLTHKDKRILYQVPLLMSAVAAARGLSMYFQAVLTQDLVLLTIRRLQNEM
                     FAHLTHAALARVEREAPAQLAARFTTDATVIREAMTRAVNAIGDGATVVGLVGTMIYL
                     DWKLSLIALILFPIAAVPVEKIGRRIRRASGGMQERLGEAAAMLNESFAQARIVRAYG
                     LEAHETARAENTFAQLYSTLLRMTRIRARLDPMLEALAGAAVALVIGFEGWRGVSPGS
                     FMGFISALLMAARPLRALGTMNAAIQEGLAGMVRVFSVIDEPAAIADAPNAMPLPAGP
                     GAVRFEHVAFTYPDGRAGLKDLDFTASPGRMLALVGASGAGKSTALALIPRLYAPRAG
                     RVLIDGADIANITLASLRDSIAYVGQEALLFDDTIGANIRLGRPDAAPDEVWAAAEAA
                     ACGFIKDMPEKMGTRVGVNGQRLSGGQRQRVAIARAILRNPRILLLDEATSALDTESE
                     ALVQAALTRLREGRTTIVVAHRLSTVRDADLIVVVADGQVVEMGTHADLLSADGAFAR
                     LVKAQALAA"
     gene            2391..3053
                     /locus_tag="VEQ16_08625"
     CDS             2391..3053
                     /locus_tag="VEQ16_08625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019089025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur transferase domain-containing protein"
                     /protein_id="HYP63938.1"
                     /translation="MYKGDLTTKQGRRNAWLDALFVDHAFLRIFWTNFAVVKPGVLYR
                     SNHPTPGNLAAFTRKVGLKSLINLRGQAKNGSDALSRDAARRLGLDFYDMAFESRGAP
                     HKDRILRLAGILAGMKAPALIHCKSGADRAGLVAGLFVLIEGGTVEEALRQLSLRFGH
                     IKQSKTGILDAFFRLYQRTGEGKKPFLDWVREDYDENELHAAFKAGKVAEFINAKLLG
                     RE"
     gene            complement(3105..>3350)
                     /locus_tag="VEQ16_08630"
     CDS             complement(3105..>3350)
                     /locus_tag="VEQ16_08630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63939.1"
                     /translation="FTITAAIKTSPAPQGQLQVELDWVVRDRNNRIVGQVTQLHDLDP
                     KDITPYWGDVAAAAAQEAAQGVSTVVQNEILKKKPAP"
BASE COUNT          576 a         1041 c         1195 g          538 t
ORIGIN      
        1 cggtgcgcaa gacgtgccag gcgcgcgttg cgcccggcgg ctcggcgatg ccgcgcgcct
       61 cacgccccgc cgccagcagc agcgccatgg cggccagcac cacggcggcg gcgagcagaa
      121 acgcctccgg tccatggctg cccagcagcg ccagcgcgcc cggcccggct gccatcgagc
      181 cgctgaggat cagctcatag gcgccgatca gccgcccgcg cagatgctcc ggcacgctgc
      241 cattgatcca tgtatccatg ccggcccagc gcagccccag cgagatgccg agcaggagtg
      301 acagcccggc ccagagggga atggcgcgcg tcgaggcgaa gccgatatag gcggcgatgg
      361 ccagcgtcag cccggccagc accatgcgct gcagcccgat gcggtggatg atgtgcggga
      421 tgaacacgga caccgccagc agcccgaccc agggcaggcc ggacatcaga cccaccagcg
      481 cgtcgcttgc cccttccgcg cgcagcgaga gggagagcag gggcaggaac atccagaagg
      541 agccggccga gaagaagctg gcggccgtgg cgaggagtag tctgtaaggc atggaactag
      601 gccgccaggg cctgcgcctt cactagccgg gcgaatgcgc cgtcggcaga gagcagatcg
      661 gcatgggtac ccatttccac cacctggccg tccgccacca cgacgatgag gtcggcatcg
      721 cgcacggtgg agaggcggtg cgccacgacg atggtggtgc ggccctcgcg caggcgggtg
      781 agggcggcct ggaccagcgc ctcgctttcg gtatccaggg cgctggtggc ttcgtccagc
      841 agcaggatac gcgggttgcg caggatggcg cgggcgatgg cgacgcgctg gcgctgtccg
      901 ccggacaggc gctgtccgtt gacgccgacg cgcgtgccca ttttctccgg catgtccttg
      961 atgaaaccgc aagccgccgc ttccgccgcc gcccagacct cgtctggggc cgcgtccggg
     1021 cggccgaggc ggatattggc gccgatcgtg tcgtcgaaca aaagcgcctc ctggccgaca
     1081 taggcgatgg agtcgcgcaa gcttgccagg gtgatgttgg cgatgtccgc gccatcgatg
     1141 agcacgcgcc cggcgcgcgg ggcgtagagg cgggggatga gggcgagcgc ggtggatttg
     1201 cctgcgccag aggcgccgac cagggccagc atgcggccgg gcgaagcagt gaaatcaagg
     1261 tccttcagcc cggcgcggcc atccggatag gtgaaggcga catgctcgaa ccgcacggca
     1321 ccagggccgg cgggcagggg catggcgttg ggcgcgtcgg cgatggcggc gggctcgtcg
     1381 atgacggaga agacgcgcac catgccggcc agcccttcct ggatggcggc attcatggtg
     1441 ccgagcgcgc gtaaggggcg ggcggccatc agcagggccg agatgaagcc catgaagctg
     1501 ccgggcgaga cgccgcgcca gccctcgaag ccgatgacca gggccacggc ggcgccggcc
     1561 agggcttcca gcatcgggtc cagcctggcg cggatgcgcg tcatgcgcag caatgtgctg
     1621 taaagctggg cgaaagtgtt ctcggctcgc gccgtctcat gcgcctccag cccataggcg
     1681 cgcacgatgc gggcctgggc gaaactctca ttgagcatgg cggcggcctc gccaagccgc
     1741 tcctgcatgc cgcccgaggc gcggcgaatg cgccggccga ttttctccac cggcacggcg
     1801 gcgatgggga acaggatgag ggcaatgagg ctgagcttcc agtcgagata gatcatggtg
     1861 ccgaccagac caaccacggt ggcgccatcg ccgatggcgt tcacggcccg tgtcatggcc
     1921 tcgcggatga cggtggcatc ggtggtgaag cgggcagcga gctgggccgg ggcctcgcgc
     1981 tccacgcgtg ccagggcggc atgggtgaga tgggcgaaca tctcattttg cagcctgcgg
     2041 atggtgagca gcaccagatc ctgcgtcagc acagcctgga aatacattga gagtccccgg
     2101 gcggccgcca cggcggacat cagtagcggc acctggtaga ggatgcgctt gtccttgtgg
     2161 gtgagcaggg tgaaggccca gtcgatgatg gccgggtaga gcgccgtggt gccggacatg
     2221 atgagtgtgg cgacgatgat gagcgcgatg cggccgcgga aatggctcac atgttggcgc
     2281 cacagacggc ggataagatg gagggtcgat acgttctggc tcatggcggc gctcttcaag
     2341 cacatttctg ctccaggcaa aaatgcgcta gagggcggcc catggacacg atttacaagg
     2401 gcgacctcac gacgaagcag ggccgccgca atgcctggct tgatgcgctg tttgtcgatc
     2461 acgctttttt gcgcattttc tggaccaatt tcgccgtggt caagccgggg gtactgtatc
     2521 ggtccaacca tcccacgccg ggcaatctcg ccgccttcac gcgcaaggtg gggctgaaat
     2581 cgcttatcaa tctgcgcggc caggcgaaga acgggtcgga cgcgctctct cgcgacgccg
     2641 cccgccgctt agggctcgat ttctacgaca tggcgttcga gagccggggc gccccgcaca
     2701 aagaccgcat attgcgcctg gccggcattc tcgccggcat gaaggcgccg gcgttgattc
     2761 attgcaaatc cggcgccgac agggctggtt tggtggccgg gctgttcgtc ctcatcgagg
     2821 gtggcacggt ggaggaggcg ctgcgccagc tctcgctccg tttcggccat atcaaacaat
     2881 ccaagactgg gattctggac gccttcttcc gcctgtacca gcgtacggga gaggggaaaa
     2941 aaccgttcct cgactgggtg cgcgaggatt atgatgagaa tgagctgcac gccgccttta
     3001 aggcgggcaa ggtggcggag ttcatcaacg cgaagctgct ggggcgggag taggttctgg
     3061 ctttctgctc tgggtgagcc tgggaaaggc ggcagttgtg cgtattacgg cgctggtttc
     3121 ttcttcaaaa tctcattctg caccacggtg ctgacccctt gcgccgcctc ctgcgccgcc
     3181 gccgccgcca cgtcgcccca atagggtgtg atgtccttgg ggtcgagatc gtgcagttgt
     3241 gtcacctggc cgacgatgcg gttattgcgg tcgcgtacca cccagtccag ctccacttgc
     3301 agctggcctt gtggcgcggg cgaggttttg atcgccgcgg tgattgtgaa
//
LOCUS       DASQCV010000566         7758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2609237, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000566 DASQCV010000000
VERSION     DASQCV010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 7758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7758
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2609237"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..656)
                     /locus_tag="VEQ16_08635"
     CDS             complement(<1..656)
                     /locus_tag="VEQ16_08635"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019461529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HYP63940.1"
                     /translation="MRSRMRILFITSSRIGDAVISCGILEQLRQNHPEARFTIACGPV
                     SEGVFTRFPALERLILFEKERFDLHWLKLWAQVAPHLWNLVVDVRGSGLAFFLAAKRR
                     KILRGGRRPGRRYKQLGAALGFAPPPLPLAWTAPEDEAKAAALLGDGPIIALGPTANW
                     DGKIWPPERFVALYEALAPLIPGARPAIFGGPGAAEAARAAPVLAALPGAINLVGALS
                     "
     gene            771..1613
                     /locus_tag="VEQ16_08640"
     CDS             771..1613
                     /locus_tag="VEQ16_08640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein"
                     /protein_id="HYP63941.1"
                     /translation="MRPGAASPILPGMTKLAHLPQRGVIEVTGVDRVDFLNGLVSNDV
                     AKAAPGRAVWAALLTPQGKYLSDFFIFATDEALLLDVLAADIPALMPKLRRFKLRSSV
                     GLADVSAQYGVYAAWGGEPPEAWLSAPDPRLPEAGWRLMSPAPLAANASPEDYAAHRI
                     ALGLPDGPPDLEPDKTLLLEAGFDELGGVAWDKGCYMGQELTARTKYRGLVKRRLVPV
                     ALSAPAAPGTPVLAEGAEVGSLRSQADGLALAMLRVDALGKPLTVNNDLLTLRLPGWW
                     RAPA"
     gene            1834..4875
                     /locus_tag="VEQ16_08645"
     CDS             1834..4875
                     /locus_tag="VEQ16_08645"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP63942.1"
                     /translation="MAIQGHVDHMEGAYVTGWAIAVPDSGNCVIAVTDSSGQELARGR
                     ASRHREDLVLLGAGRSTLGFRIPVPLEGGPRSLRILANGEEVPGSPVMTGPGLYDGDG
                     ELEQDSIIGWVTERTPGFAAPCITITNQWGEEVGRGQSGFSAQDADPHFRPARFAITL
                     DDQCFGAGEMVLTLRANGVAFASASCELGLIGNIEIFSPTRCLGWLLSPNVPARVYPL
                     EVYRDGRLAAEACNDVAREDVSTHHAAAVTPGFDITLEPEETAITAPVALSLRVAGST
                     RDLFEGPYLFASRAAAVSAAHRVARLANLSLPGIGPGERAVLTQAIADYLARTRAEDG
                     AVFTHQAVPASDRKLAIIIPIYRGLEETHACIASVLAHRNAESDLLILINDCSPEPMM
                     AVMLAACAQLPNVVVLTNSENLGFVRTVNRGLGAVAGADVLLLNADTVLHAGGLEELK
                     RIAVAHPDIGTITAMSSNATIFSYPHPELRREALEDVSWTELAALALKANAGRVEDVP
                     TGHGFCMFIKDEVLRRVGRFDEAFGRGYGEENDFCARATALGYRNVAAGGVLVEHKES
                     VSFSTERASLLARNMPRLNTLYPEYTPVIMQFEREDGLRRLRWGLDAARLARARAAGT
                     DFVLVVTHELEGGTARAVRDIEGHTLYGGAKLLTLSVGEGGLLMLSAEAPLLRAGFAP
                     EEVAELFALLDAAVPGRVMVHQLLGFPAGFLAALGPWLTGRESLFWAHDFYAFCPRVT
                     MIDAIGRFCGGADADTCARCVEMEGAHEASRLTDLTPAGHRALFAGLLASFTHRLVPS
                     ANAAAYLSRLFPRLTWEVLPHPEPEEGVAAKARAGSDDEIVLLGAIGPHKGSQLLLDI
                     ARRARLTHPHLHFRVIGYTNLDKALKAIGNVTITGVYAPEDLPALLAEAKGRLGLFLP
                     GWPETYSYTLSELVRHGFIPLVPDIGAPADRVRAAKFGVVFPFPASPEAVLQIIDDIA
                     SGKLKPVAKGASPLRFFSSLAALARLRQLAGHAPALEVADP"
     gene            5127..6494
                     /gene="gorA"
                     /locus_tag="VEQ16_08650"
     CDS             5127..6494
                     /gene="gorA"
                     /locus_tag="VEQ16_08650"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004362 - glutathione-disulfide reductase
                     (NADP) activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HYP63943.1"
                     /translation="MDFDLFVIGGGSAGVRCARIAAGHGARVGVAEDRFWGGTCVNIG
                     CVPKKFLVMAAEYGGTTQDARGFGWDAAPGAHNWKALIAAKDKEISRLNGIYQRLLDQ
                     AGAKIFNARARLIDAHTLDVGGERITAEKIVIATGGHPTGLDIPGAGHAIISDDAFYL
                     PERPRRIAIIGSGYIAVEFAGIFAGLGAETHLIYRQPLPLRGFDGDLRAALAETLAGN
                     GIALHPGTKPTAIVAAETGKRVALSDGTAVEVDLVFFATGRAANTKGLGLEEIGVKLG
                     ENGEVLVDANFATSVPHIYALGDVTDRLNLTPVATAEGHALADSLFGNRKRGVSLANV
                     PTAVFSIPPIATVGLTEEEAAKDRPVKIFVTRFTPMRHTITGRVRKTVMKLVVDEATD
                     QVLGAHMLGEDAPEIMQGIAVAIVAGATKADFDRTIGIHPTAAEEFVTLRTQTRVAGP
                     GIGPE"
     gene            6605..>7758
                     /locus_tag="VEQ16_08655"
     CDS             6605..>7758
                     /locus_tag="VEQ16_08655"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HYP63944.1"
                     /translation="MDTIIPAELKTSWTPGSWRNCPIKQVPSYPNPDRLAAMEARLTR
                     FPPLVFAGEARNLKAHLARAAKGEAFVLQGGDCAESFGDFTANIIRDTFRVLLQMAVV
                     LTYGGALPVVKLGRMAGQFAKPRSSDNETQGTVTLPSYRGDIINGPDFSAEARIPDPT
                     RMEFGYFQSAGTLNLLRAFASGGYADLHEVHRWNLDFVKNSPLAARYQDLSARIDETL
                     RFMAACGLNSGTTPQIRETDFYTSHEALLLPYEQALTRIDSTTGDWYACSAHFLWIGD
                     RTRQADGAHVEFMRGIRNPIGMKVGPSMEVDDLLRIMDILDPENEPGRLTLIARMGAG
                     KVAEKLPPLLRAVKRAGRTPVWLCDAMHGNGITTANKVKTRRFDDIVAELR"
BASE COUNT         1276 a         2428 c         2681 g         1373 t
ORIGIN      
        1 aaagagagag cgccgacgag gttgatggcg ccggggagtg ccgccagcac cggcgcggcg
       61 cgggccgcct cggcggcacc cgggccgccg aaaatggccg ggcgggcgcc gggaatgagc
      121 ggggccaggg cctcatacaa cgccacgaaa cgttccggcg gccagatttt cccgtcccaa
      181 ttggcggtgg ggccgagggc gatgatggga ccgtccccga gcagggcggc ggccttggct
      241 tcgtcctctg gcgcggtcca ggccagcggc agcggcggcg gagcaaagcc gagcgcggcg
      301 ccgagctgct tgtagcgccg ccctggccgc cgcccgccac gcaggatctt gcggcgcttc
      361 gcggccagga agaaagcgag gccggagccg cgcacatcca ccacgaggtt ccagagatgc
      421 ggcgccacct gggcccagag tttcagccaa tgcaggtcga aacgctcttt ctcgaacagg
      481 atcagccgct ccagtgccgg gaagcgggta aaaacccctt cggacaccgg gccgcaggcg
      541 atggtgaagc gcgcttccgg atggttttgc cgcagctgct ccaggatgcc gcaggagatg
      601 acggcgtcgc cgatgcggga ggaggtgatg aagagaatgc gcatgcggct gcgcatctag
      661 ccggtttggc cccgagcgca aaactggcgg cacaaaactt ccgtcttgcc ggtttgcgcg
      721 taggcgcaaa atttccgtct tgccggtttg cgcgtaggcg caaaccgggc ttgcggccgg
      781 gcgcggcctc gcccattttg cctggcatga cgaaactggc gcatctgccg caacgcggcg
      841 tcatcgaagt caccggcgtg gaccgcgtgg actttctgaa cgggctggtc agcaatgatg
      901 tggcgaaggc agcacctggc cgcgccgtat gggcggcgct gctgacaccg cagggcaagt
      961 atctatccga tttcttcatt tttgccacgg acgaggcgct gctgctggac gtgctggcgg
     1021 cggacattcc cgcgctcatg ccaaaattgc ggcgcttcaa gctgcgctct tcggtggggc
     1081 tggcggatgt ctcggcgcaa tacggggtat atgcggcctg gggcggcgaa ccaccggagg
     1141 catggttgag cgcccccgac ccgcgcctgc ccgaggccgg ctggcgcctg atgagcccgg
     1201 cgccgctcgc ggccaatgcc tcgcccgagg attacgcggc gcaccgcatc gcgctcggcc
     1261 tgcccgatgg cccgccggac ctggagccgg acaagacctt gctgctggag gccgggttcg
     1321 atgagctggg cggcgtggcc tgggacaaag gctgctatat gggccaggag ctgacggcgc
     1381 ggacgaaata tcgcgggctg gtgaaacggc ggctggtgcc ggtggcgctg agtgccccgg
     1441 ccgcgccagg cacgcccgtg ctggcggaag gcgccgaagt gggcagcctg cgctcgcagg
     1501 cggacgggct ggcactggcc atgctgcgcg tggacgcgct cggcaaacct ctaacagtta
     1561 ataacgattt actaacacta cgcctgcccg gctggtggcg tgctcccgcc tgagcagcgg
     1621 gcagccggtt ttcgaaatag ccggcacgga cataatgctc gcgggcggat ttcatcccgc
     1681 cgcttttcac cgccgccgca acgtccggat atggcgatgc cagcatccca tatgacggtg
     1741 ccgttaaaaa acacctcaca atctcttgag ccaatatggg cgttgttgaa gaaatgaggt
     1801 aacggcacag aacgagtgac aacggggtga cgcatggcga tccaggggca tgtcgatcat
     1861 atggagggcg cctatgtgac gggctgggcg atcgccgtgc ccgatagcgg gaattgcgtc
     1921 attgccgtaa cggattcgtc tggccaggag ctggccaggg gccgtgcctc gcgccaccgg
     1981 gaggatctgg tgctgctcgg ggccggccgg tccaccctgg gcttccgcat ccccgtgccg
     2041 ctcgagggcg gcccgcgcag cttgcggatt ctggccaatg gcgaggaagt gcccggctcg
     2101 ccggtgatga ccggccctgg cctctatgat ggcgatggcg agcttgagca ggacagcatc
     2161 ataggctggg tgaccgagcg cacccccggc tttgccgcgc cctgcatcac catcaccaac
     2221 cagtggggcg aggaggtggg gcgcgggcag agcggcttca gcgcccagga tgcggacccg
     2281 catttccgcc cggcgcgttt tgccatcacg ctggatgacc aatgtttcgg cgcgggtgaa
     2341 atggtgctga ccctgcgcgc caatggcgtg gcctttgctt ccgcttcgtg cgaactgggc
     2401 ctgatcggca atatcgagat tttttccccc acgcgctgcc tgggctggct gctctcgccc
     2461 aacgtgccgg cacgggtgta cccgctggag gtctatcgcg acggcaggct ggcggccgag
     2521 gcgtgcaatg atgtggcgcg cgaggatgtg agcacgcatc atgccgcggc ggtgacgccg
     2581 ggctttgata tcacgctgga accggaggag acggccatta ccgcgccggt ggcgctgagc
     2641 ctgcgcgttg ccggcagcac gcgggacctg tttgagggac cctatctttt tgccagccgc
     2701 gcggcggcgg tgagtgcggc gcatcgcgtg gcgcgcctgg ccaatctcag cctgcccggc
     2761 attggtcctg gcgagcgcgc ggtgctgacc caggcaatcg ccgattatct ggcacggaca
     2821 cgggcggagg atggggccgt atttacgcac caggcagtgc cggcttctga ccggaagctt
     2881 gccattatca tccctatcta ccgggggctg gaggaaaccc atgcctgtat tgcctcggtg
     2941 ctggcgcacc gcaacgcgga gagcgatctg ctgatcctga tcaatgattg ctcgccagag
     3001 cccatgatgg cggtcatgct ggcggcctgc gcccagcttc ccaatgttgt ggtgctgacc
     3061 aacagcgaga atctcggctt tgtccgcacc gttaatcgcg ggctgggggc ggtggcgggg
     3121 gcggatgtgc tgctgctgaa cgcggatacg gtgctgcatg cgggggggct tgaggaactc
     3181 aagcgcatcg ccgtggcgca tccggatatc ggcaccatta cggccatgtc cagcaacgcc
     3241 accatcttct cctatccgca tcccgagctg cgccgggaag cgcttgagga tgtgtcctgg
     3301 accgagctgg cggctttggc gctcaaggca aatgccggcc gggttgagga tgtgccgacc
     3361 ggccatggct tctgcatgtt catcaaggat gaggtgctgc gccgggttgg gcgcttcgat
     3421 gaggcgttcg gccgcggcta tggcgaggag aatgatttct gcgcccgtgc caccgcgctg
     3481 ggctaccgca acgtggcggc gggtggcgtg ctggtggagc ataaggagag cgtttccttc
     3541 agcaccgagc gggccagcct gttggcgcgc aacatgccgc ggttgaatac gctttatccg
     3601 gaatacacgc ctgtcatcat gcagtttgag cgcgaggacg ggctgcgccg gctgcgctgg
     3661 gggctggacg cggcgcggct ggcgcgggcc agggcggcgg gcacggattt cgtgctggtc
     3721 gtgacccacg agctggaagg cggcacggcc agggcggtgc gggatatcga gggccacacg
     3781 ctttatggcg gggcgaagct gctgaccttg tccgtcggcg aaggcgggct gctgatgctg
     3841 agcgccgagg cgccgctgct gcgggcgggc tttgccccgg aggaggtggc cgaactcttc
     3901 gcgctcctgg atgcggcggt gccggggcgg gtgatggtgc atcagcttct gggcttcccc
     3961 gcaggcttcc tcgccgcgct gggcccctgg ctgacggggc gggagagcct gttctgggcg
     4021 catgattttt acgccttctg cccgcgcgtg acgatgatcg acgccattgg ccgtttctgc
     4081 ggcggggcgg atgccgatac atgcgcgcgt tgcgtggaga tggagggcgc gcatgaggcg
     4141 tcgcgcctga cggatttgac gcccgccgga catcgcgcct tgttcgccgg cttgctggcc
     4201 agcttcaccc atcggcttgt gccctcggcc aatgcggccg cctatctgtc ccgccttttt
     4261 ccgcggctca cctgggaggt gctgccgcat cccgagccgg aggagggcgt tgcggccaag
     4321 gcgcgggcgg gcagcgatga cgagattgtc ctgctaggcg ccatcggccc gcataaaggc
     4381 tcgcagctgt tgctggatat cgcccggcgc gcgcgcctga cccatccgca tctacatttc
     4441 cgcgtcattg gctacaccaa tcttgacaag gcgttgaagg cgatcgggaa tgtgacgatc
     4501 accggcgtat atgcgccgga ggatctgccg gcgctgctgg ccgaggccaa aggccggctc
     4561 gggctgttcc tgcctggctg gccggaaacc tattcctata cgctttcaga gttggtgaga
     4621 catggcttca tcccgctcgt gcccgatatc ggcgcaccgg cggacagggt gcgcgccgcg
     4681 aaattcggcg tggtcttccc cttcccggcc tctccggagg cggtgttgca gatcatcgac
     4741 gatatcgcct ccggcaagtt gaagccggtg gccaaggggg cgtccccgtt gcgcttcttc
     4801 tccagccttg ctgcgctggc ccggctgcgg cagctggccg gccatgcgcc cgctttggag
     4861 gtggcagacc cctgagagac tgtttggaaa ctcgctctgg tgagtcgcgt ggcggtgatt
     4921 tttgagcacc ggagcggagc gtacttcagt acgtgagcac tgttgcttcg cgcactcgaa
     4981 ccggtggcgt gcgctcgcaa ccacagaaaa tcaccgtcag gcggccgcca gagtagagtt
     5041 tgcaaacggt ctctgacgca tccggggctg gtaagtgcac ggttaaatgc tacgtaaccc
     5101 cggcgaaaac cggggacgga gcaaagatgg atttcgacct gtttgtgatt ggtggcggct
     5161 cggccggcgt gcgttgcgcg cgcatcgcgg ctggccatgg cgcgcgtgtg ggcgtggcgg
     5221 aagaccgctt ctggggtggc acctgcgtga atatcggctg cgtgcccaag aaattcctcg
     5281 tgatggccgc cgagtacggc ggcaccacgc aggatgcgcg cggcttcggc tgggatgcag
     5341 cgcccggcgc gcataactgg aaggcgctca tcgccgccaa ggacaaggag atttcccggc
     5401 tcaacggcat ctaccagcgc ctgctcgacc aggccggcgc caaaatcttc aacgcccgcg
     5461 cccggctcat cgacgcgcat acgctggatg tcggcggcga gcgcatcacc gcggagaaaa
     5521 tcgtcatcgc caccggcggc caccccaccg ggctggatat tcccggcgcc gggcacgcca
     5581 ttatctcgga cgacgctttc tacctgccgg agaggccccg gcgcatcgcc atcatcggca
     5641 gcggctatat cgctgttgaa tttgctggga ttttcgccgg gcttggcgct gaaacccatc
     5701 tcatctaccg ccagcctttg ccgctgcgcg ggttcgatgg cgatctccgc gccgccctgg
     5761 ccgagacgct ggcgggcaat ggcattgcgc tccatcccgg cacgaagccc accgccattg
     5821 tggcggcgga aacgggcaag cgcgtagcgc tcagcgatgg cacggcggtt gaggtcgatc
     5881 tggtcttctt cgccactggc cgcgccgcca acaccaaggg gttgggactg gaagaaattg
     5941 gcgtgaagct cggcgaaaat ggcgaggtgc tggtggatgc gaatttcgcc acctccgtgc
     6001 cccatatcta cgcgctgggc gatgtcacgg accggctcaa cctcaccccc gtggccacgg
     6061 ccgagggcca tgcgctagcg gacagtctgt tcggcaacag gaagcgcggt gtgagcctgg
     6121 ccaatgtgcc cactgctgtc ttctccatcc cgcccatcgc cacggtgggg cttaccgagg
     6181 aggaagcggc caaagacagg cccgtgaaaa ttttcgtgac gcgcttcacc ccgatgcgcc
     6241 atacaattac cggccgggtc cgcaagacgg tgatgaagct ggtggtggac gaagccacgg
     6301 accaggtgct gggggcgcat atgctgggcg aggatgcccc ggaaatcatg cagggcatcg
     6361 ccgtcgccat cgtcgccggc gccacgaaag cggatttcga ccgcaccatc ggcatccacc
     6421 caacggcggc ggaggagttt gtgacgttgc ggacacagac cagggttgcc gggcccggta
     6481 ttggccccga gtagctttgg cttagattta ttgcttataa gggcgcgata ggacgcccct
     6541 gcgcgccata ggcgtgatag cgcatgaaag aaacataggc gtgctagcgc acgacggaga
     6601 gaccatggat acgatcatcc cagctgagct gaaaaccagc tggacccccg gaagctggcg
     6661 caactgcccg atcaagcagg tgccgagcta tcccaatccg gacagactgg ccgccatgga
     6721 ggcgcgcctg acccgctttc cgccgctggt ttttgccggc gaggcgcgca acctgaaggc
     6781 ccatctggcg cgggcggcca agggcgaggc gtttgttctg cagggcggcg actgcgccga
     6841 gagctttggc gacttcaccg ccaacatcat ccgcgacacc ttccgcgtgc tgctgcagat
     6901 ggcggtggtg ctcacctatg gcggcgcttt gccggtggtg aagctcggcc gcatggccgg
     6961 ccagttcgcc aagccgcgct cctcggacaa tgagacgcaa gggacggtga cgctgccctc
     7021 ctatcgcggc gatatcatca atggcccgga tttctcggcg gaagcgcgca ttcccgaccc
     7081 gacccgcatg gaattcggct atttccagtc cgccgggacg ctcaacctgc tgcgcgcctt
     7141 cgcctccggc ggctatgcgg atttgcacga ggtgcatcgc tggaacctgg attttgtgaa
     7201 aaactcgccg ctcgcggcgc gttaccagga tttgtccgcg cgcatcgacg agactttgcg
     7261 tttcatggcg gcctgcgggc tgaatagcgg caccacgccg caaatccgcg agacggattt
     7321 ctacaccagc cacgaggcgc tgctgctgcc ttacgagcag gccctgaccc gcatcgattc
     7381 caccaccggc gactggtatg cctgctcggc gcatttcctc tggatcggcg accgcacccg
     7441 ccaggcggac ggcgcgcatg tggaattcat gcgcggcatc cgcaacccga tcggcatgaa
     7501 ggtcggcccc tccatggagg tggatgacct gctgcgcatc atggatattc tcgaccccga
     7561 gaatgagcct gggcgtttga cgctgatcgc ccgcatgggc gcaggcaagg tggcggagaa
     7621 gctgccgcct ttgctgcgcg cggtgaagcg cgcgggccgc accccggtat ggctgtgcga
     7681 tgccatgcat ggcaatggca tcaccaccgc caacaaggtg aagacccgcc ggttcgacga
     7741 catcgtcgcc gaattgcg
//
LOCUS       DASQCV010000567         1996 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2444405, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000567 DASQCV010000000
VERSION     DASQCV010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2444405"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..395)
                     /locus_tag="VEQ16_08660"
     CDS             complement(<1..395)
                     /locus_tag="VEQ16_08660"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase 87 family protein"
                     /protein_id="HYP63945.1"
                     /translation="MSLFAALSLLPLAAGFHLFNLASLAAAAFLLWRSNVPPWCIALG
                     LISPAVIWNLYLGQLGLLCGALLIFGLSRIENQPWLGGLALSLLALKPPYALLVPIAV
                     LARRNWTAVAAGALGLTMQIGLSCLFIHAS"
     gene            complement(758..1930)
                     /locus_tag="VEQ16_08665"
     CDS             complement(758..1930)
                     /locus_tag="VEQ16_08665"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 87 protein"
                     /protein_id="HYP63946.1"
                     /translation="MLSRLSRLCAWAVLAAALLTGAALFVLGVKAQMLRLWLYMRHGL
                     SFADPYCTTGYCDYGMFWLAGFLLRHGQAASLYGPHYAALAANILPYKTGWWPFVYPP
                     TILLPAYGMALLPLAAGYYLVSALMVLASAQLLRAARLPWRCVAAGLTSFPAMWTLYL
                     GQWGILCGALLIYGLARLQDRPARAGVALGLLAVKPQYALLAPVAVLATKQWRALAAG
                     AAVLALFLVLSWLLGGTACWRAYLGPGRAAMRALLEQEFPANCEAMGSSVFWMLRSLH
                     LSVAGAYLGQAVVSLGSALLCWRLWRRETQNRLMASAALTLLASPYGFTGDMAMICTL
                     LPLLARHGAHWRNALLGWLWVAPAFVPVFVAHCGILPTPLLLAAMLGLSLTAPATE"
BASE COUNT          487 a          648 c          598 g          263 t
ORIGIN      
        1 gaggcatgga tgaagaggca ggatagtccg atctgcatgg tgagaccgag cgcgcccgca
       61 gccacggccg tccagttccg gcgtgcgaga acggcgatcg gcaccaggag cgcatagggt
      121 ggtttgagcg ccagcagtga cagcgccagt ccccctagcc agggctggtt ctcaatccgg
      181 ctgagaccaa aaatgagcaa tgcgccgcag agcaggccga gctggcccag ataaagattc
      241 cagatgaccg caggactgat cagtccaaga gcaatgcacc aaggcggaac gttgcttcgc
      301 cacaacagaa atgccgccgc cgccagcgaa gccaggttga aaaggtgaaa ccccgcggca
      361 agaggcagta acgacaaagc ggcgaacagg gacaaagccg ttggtggata gatgaagggc
      421 ggctgcgtat ggtggatcag tgccgcgatc agcgctttga actgggtgta gtcatacaga
      481 ttaacgctga tctactggcg caaagccgtg cctgccgccc aaaatatatc aaaatcgcca
      541 cgataagcga tataagaaga ggctgcgaag ccgaaccggc tgggccagtc catgccgatt
      601 agccagtatg tatgaaacaa atatacgcat aaataaacca gaccaggcac cagcccgagc
      661 gcggcaacca cgtagccagt gactgtaaaa aggctagggg cgcgaggcgg catgtctcag
      721 acctatcatt tggataggcg aagactcaag tcttggctca ttccgtggct ggagctgtca
      781 agctcagccc cagcatggca gccagcagca gcggcgtggg caaaatgccg caatgggcca
      841 cgaataccgg cacaaaagcc ggcgccaccc atagccatcc cagcagcgcg ttgcgccagt
      901 gcgcgccgtg ccgcgccagc agcggcagca aggtgcagat catcgccata tcgccggtaa
      961 agccgtaagg gctggcgagc agggtcagcg cggcgctggc catgagcctg ttttgcgtct
     1021 cccgccgcca caggcgccag cacagcagcg cgctgcccag gcttaccacg gcctggccca
     1081 gatatgcccc ggcaacggag agatgcaggc tgcgcagcat ccagaagacg gagctgccca
     1141 tggcttcgca attcgccgga aactcctgct ccagcaatgc gcgcatcgcc gcacgccccg
     1201 gccccagata agcgcgccag cacgccgtgc cgcccagcag ccaggacagc accagaaaca
     1261 atgccagtac ggctgcccct gccgccagcg cccgccattg cttcgtggcc agcaccgcca
     1321 ccggtgccaa cagcgcatat tgcggcttta ccgccagcag ccccagcgcc accccggccc
     1381 gtgccggccg gtcctgcagc cgcgccagcc cgtaaatcag cagcgctccg cataatatgc
     1441 cccattggcc gagatagagc gtccacatgg cgggaaacga ggtcagtccg gcggcgacgc
     1501 aacgccaagg cagccttgcc gcgcgcaaca gttgcgccga ggccagaacc atcaaggccg
     1561 aaacgagata atagcccgcc gccaaaggca acaatgccat cccataagcg gggagcaaaa
     1621 tggtgggcgg ataaacaaag ggccaccatc ccgtcttata aggcagaata ttcgccgcca
     1681 gtgccgcata atgcggccca tataacgacg ccgcctggcc atggcggagc aaaaaccccg
     1741 ccagccagaa catgccataa tcgcaatagc ccgtggtgca gtagggatcg gcgaagctca
     1801 gcccgtggcg catataaagc cagagccgca gcatttgcgc cttcacgccc agaacgaaca
     1861 gcgcagcacc cgtcagcagc gccgccgcca gcacagccca agcgcagagg cgggagagtc
     1921 gggacagcat gacgcagtct tacgccgccg cggcctgccc ctcaacctat gattgcaggc
     1981 gcggcgcggc ctcgac
//
LOCUS       DASQCV010000568         2045 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3272031, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000568 DASQCV010000000
VERSION     DASQCV010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3272031"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1029)
                     /locus_tag="VEQ16_08670"
     CDS             complement(<1..1029)
                     /locus_tag="VEQ16_08670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP63947.1"
                     /translation="MKRFTDLFISRPVLSIAVSILILVLGLRAVLSLPVQQFPQTESA
                     TITITTTYPGASPDTVAGFVTTPMERAVSQVNGIDYMTSTSQTSVSTITINVQLNYDP
                     DKALTEVSAKVNSILNQLPQGTEQPVLDLQIGQTLAAMYISFSSDELSGNQMTDYVER
                     VVQPQIQAVPGVQLADVIGAQDYAMRIWLKPEKLASYGLTPTDVWNALAANDFISPLG
                     NTKGENVQVTLTANTGLHTADEFGNLIVKQQNNTIIRLRDVADVELGSDDYDQDVTFS
                     NKATVFMGVDAAPAANLLDVVAGVRKVFPSIQANLPQGMKAEIGFDATDFVHASIREV
                     LTALGEALV"
     gene            complement(1036..>2045)
                     /locus_tag="VEQ16_08675"
     CDS             complement(1036..>2045)
                     /locus_tag="VEQ16_08675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYP63948.1"
                     /translation="VQYVATVKAGISDWQPSLQSVGSITAINGASLSAEVGGIVDTLD
                     FESGQDVEKGELLLTLRPNNDPAVLAQLQANAALAAINLARDQKQFAVSAVSQSQLDS
                     DRATLAADQAQVAAQQATMAEKQVRAPFTGRLGIRQVDLGQYLSPGAEIVSLQQLNPV
                     YVDFHMPQQALAQLQPGQKVAVDVDAYPNEPFTGTVTALDSEVDQNTRSIEVRATVDN
                     AKLLLRPGMFASVNVNTGAPAQEVTLPQTAITYNSYGDTVYIVTQGKDANGKQALVAN
                     QVFVQLGATRGNQVAVTSGVKPGDEVVVAGQVKLRNGAVVAINNTLLPPDGSNPNPPN
                     E"
BASE COUNT          372 a          673 c          600 g          400 t
ORIGIN      
        1 aaccagcgcc tcgccaagcg ccgtcagcac ctcgcggatc gaggcatgca cgaaatccgt
       61 cgcatcgaag ccgatttccg ccttcatccc ctgcggcaga ttggcctgga tggaaggaaa
      121 cactttccgc actcccgcca ccacatcgag cagattcgcc gccggcgccg catcgacgcc
      181 catgaacacc gtggccttgt tggagaaggt cacgtcctgg tcgtaatcat ccgagcccag
      241 ctccacatcc gccacatcgc gtaagcggat aatggtgttg ttctgctgct tgacaatgag
      301 gttgccgaat tcatccgccg tatgcaggcc ggtgttggcg gtcagcgtca cctgcacgtt
      361 ctcgcccttg gtattgccga gcggcgagat gaaatcattg gcggcgagcg cgttccacac
      421 gtcggtcggc gtcagcccgt aggaggccag cttctccggc ttcagccaga tgcgcatggc
      481 ataatcctgc gcgccgatca catcggccag ctgcacgccc ggcacggcct ggatctgcgg
      541 ctgcaccacg cgctccacat aatccgtcat ctggttgccg gagagctcgt ccgagctgaa
      601 ggagatatac atcgccgcca gcgtctggcc gatctgcaaa tccagcaccg gctgttccgt
      661 gccttgcggc aactgattca aaatcgaatt gaccttggcg ctaacctcgg tcagcgcctt
      721 gtcaggatcg taattgagct ggacattgat ggtgatggtc gagacgctcg tctggctcgt
      781 cgaggtcata tagtcgatgc cattgacctg cgacactgcc cgctccatcg gcgtcgtcac
      841 gaatcccgcc accgtgtcgg gcgaagcgcc cggataggtc gtggtgatgg tgatggtggc
      901 actttccgtc tgcggaaatt gctgcacggg cagagacagc acggcgcgca agcccagcac
      961 caggatgagg atgctgaccg caatggatag caccgggcgg ctgatgaaga ggtcggtgaa
     1021 gcgcttcatc gccgctcact cgttcggcgg gttggggttg gagccgtcag gcggcagcag
     1081 cgtgttgttg atggccacca cggcgccatt gcgcagcttc acctgccccg ccaccaccac
     1141 ttcatcgccc ggcttcacgc cggacgtcac cgccacctgg ttgccgcgcg ttgcgcctag
     1201 ctgcacgaag acctggttgg ccaccagcgc ctgcttgcca ttcgcatcct tgccctgggt
     1261 cacaatgtaa accgtgtcgc cataggagtt gtaggtgatg gccgtctgcg gcagcgtgac
     1321 ctcctgcgca ggcgcgccgg tattcacgtt cacgctcgca aacataccag gccggagcag
     1381 aagcttggca ttatcgacgg tggcgcgcac ctcaatcgaa cgcgtattct ggtcgacctc
     1441 ggaatccagc gccgtgacgg tgccggtgaa aggctcgttg gggtaggcat ccacatccac
     1501 cgccaccttc tgccccggct gcaattgcgc cagcgcctgc tgtggcatgt ggaaatcgac
     1561 ataaaccggg ttaagctgct gcaatgacac gatttccgcg cccggcgaca gatattgccc
     1621 gagatcgacc tgcctaatgc cgagccggcc cgtaaacggc gcgcgcacct gcttctccgc
     1681 catggtcgcc tgttgcgccg ccacctgcgc ctggtcggcc gcgagcgtcg cgcggtcgct
     1741 gtcgagctgc gactggctca ccgcgctcac agcaaactgc ttctggtcac gcgccagatt
     1801 gatggccgcc agcgccgcat tggcctggag ctgcgcaagc acggcgggat cgttatttgg
     1861 ccgcaatgtc agcagcaatt cgcccttctc cacatcctgc ccggattcaa aatccagcgt
     1921 atcgacaatg ccgcccactt cggcagagag cgaggcgcca ttgatggcgg taatggaacc
     1981 caccgattgc aggcttggct gccagtcgct tatccccgcc ttcaccgtcg ccacatattg
     2041 cacct
//
LOCUS       DASQCV010000569         1609 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2609478, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000569 DASQCV010000000
VERSION     DASQCV010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2609478"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..488)
                     /locus_tag="VEQ16_08680"
     CDS             complement(<1..488)
                     /locus_tag="VEQ16_08680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011633120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HYP63949.1"
                     /translation="MTKQIRLNAFAMNCVGHISSGMWRIPGDTAHRYTDLEYWIDMAQ
                     TLERGLIDGLFIADVIGLYDVHGGNGDQAYRSAAQVPVNDPLQLVPAMAAVTKHLGFG
                     ITASVAFEHPFPFARRMTTLDHLTKGRAGWNIVTSYLDSGARNLGAARLLDHDNRYEV
                     AE"
     gene            complement(493..>1609)
                     /locus_tag="VEQ16_08685"
     CDS             complement(493..>1609)
                     /locus_tag="VEQ16_08685"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR04022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SfnB family sulfur acquisition oxidoreductase"
                     /protein_id="HYP63950.1"
                     /translation="AVRLAEGAAERDRTRRIPVEELDWFSQSGLWGLNIPASHGGADL
                     SWAVIAQVIAIVSGADPSIGQLVQNHLDFVDTVRSVGSKAQQDFFFPAILRGLRTGNA
                     FSEFSSKTAGDFETKITRVGELYRVNGKKYYCSGAYLAHLVPIIAVDDEKRLYIAVAD
                     RHAPGLSVDSDWTSFGQRTTVSGTTIIDNVLLPPERVFLLPDGPSANGPLCQIVHAAV
                     DAGIARAAFEETLDFVRHHARPWIDSGQDKATDDPHTQYQLGDIAVRLRATEALLAKA
                     GRVLEVAVANPNTDNVAAASIAVAEAKVLSTEIALLATNKLFELGGTRSVLAKHGLDR
                     HWRNARTHTLHDPVRWKYNILGNWYLNGQIPPMHSWI"
BASE COUNT          305 a          502 c          511 g          291 t
ORIGIN      
        1 tcctcggcca cctcatagcg gttgtcatgg tcgagcagcc gcgctgcgcc gagattgcgc
       61 gccccgctat cgagatagga ggtgacgata ttccaccccg cgcgcccctt ggtgagatgg
      121 tcgagcgtgg tcatgcgccg cgcgaagggg aaaggatgct cgaacgcgac ggaggcggtg
      181 atgccgaagc cgagatgttt tgtcaccgcc gccatggcgg gcacgagctg tagcgggtca
      241 ttcaccggca cctgcgcggc ggagcgatag gcctggtcgc cgttgccgcc atgcacatcg
      301 taaagcccga tgacatcggc gatgaacagc ccatcgatga gcccgcgctc cagcgtctgt
      361 gccatgtcga tccagtattc cagatcggta taacgatgcg ccgtatcgcc ggggatgcgc
      421 cacatgccgg aggaaatatg gccgacgcaa ttcatggcga aggcattgag gcgaatctgc
      481 ttggtcatgg tctcaaatcc aggaatgcat aggcggaatc tgcccattca ggtaccagtt
      541 gccgaggatg ttatatttcc atcgcaccgg gtcgtgcagc gtatgggtgc gcgcattgcg
      601 ccaatgccgg tccagcccgt gcttcgccag caccgagcgc gtgccgccga gctcgaacag
      661 tttattggtg gcgagcagcg cgatttcggt ggacagcact ttggcctccg ccacggcgat
      721 ggaggcggcc gccacattgt ccgtattggg gttggccacc gccacttcca gcacccgccc
      781 tgccttggcc agcagcgcct cggtggcgcg cagccgcacc gcgatgtcgc cgagctgata
      841 ttgcgtgtgc ggatcatccg tggccttgtc ctgcccggaa tcgatccagg gccgggcatg
      901 gtggcgcacg aaatccagcg tctcctcgaa ggcggcacgg gcaatgccgg catccactgc
      961 ggcatgcacg atctggcaca gtggcccgtt ggcggacggc ccgtccggca acaggaacac
     1021 acgctccggc ggcagcagca cattatcaat gatagtggtg ccggacacgg tggtgcgctg
     1081 gccgaaactg gtccagtccg aatccacgct caaacccggt gcatggcggt ctgctaccgc
     1141 gatataaagc cgcttctcat catccacggc gatgatcggc acgagatgcg cgagataggc
     1201 gccagagcaa taatattttt taccgttgac gcggtacaat tcgccgacgc gggtaatttt
     1261 tgtctcgaaa tccccggccg ttttgctgga gaattcggaa aacgcgttgc ccgtgcgcag
     1321 gccgcgcaga atggcgggga agaagaaatc ctgctgcgcc ttgctgccca cgctgcgcac
     1381 cgtatcgacg aaatccaggt gattctgcac cagctgaccg atggacggat cggcgccgga
     1441 gacgatggcg ataacctgcg cgatcaccgc ccaggacagg tccgcgccgc catgagaggc
     1501 cgggatattg agcccccaga gcccgctttg cgagaaccag tccagctctt ccacgggaat
     1561 gcgccgcgtg cggtcgcgct cggcggcacc ttctgccagc cgtacagcc
//
LOCUS       DASQCV010000570         1804 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_620267, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000570 DASQCV010000000
VERSION     DASQCV010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_620267"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(297..1592)
                     /locus_tag="VEQ16_08690"
     CDS             complement(297..1592)
                     /locus_tag="VEQ16_08690"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP63951.1"
                     /translation="MLAVGVNSTAIMAALPNMRTELALSSAGVEWAVNAYLVVSAAFI
                     VLGGQAADRFGARLTSMVGLALFGVGSCIIAVADTQAVLLAGRALQGFAAAFAVPSTL
                     AAVDTSAGPDRRAAAIGAWTGFLMLGFSIGPLIGGALTHFTSWRVIFWLNVPLMLTAA
                     AGLACAGSASAGAHVTPRRRADWIGFVLLATFMVSLVFALHALPHARAAPLPVVVSFV
                     LAAIALLLLLVVESRAEAPLDNLRFFTRRGFVMGVAIGFLAMFSIISLLLYFNLYAQS
                     REGMGLTALEAGAALLPLSAALLTLALSAPAVAARIGLRNAMTAGLSLIPIASAIIGM
                     TTAAGGMVLLAIGFFAMGAGLAVPYALAPRLALSALSPAQAGQGSGIVNASTFLGGSA
                     GVAGGATAYALGGFVGVLGMLVLAGMIGAALSRGIQETE"
BASE COUNT          374 a          594 c          584 g          252 t
ORIGIN      
        1 ggaactagca gaggcgcgtg agcagcagtc cgcaacgtcg gaggtgcgcg cgtcatctca
       61 agttcgcccg gcgcgctggg gtcagttttc caggccattc tggagaacgc cacacatatc
      121 tgcgaagcca agttcgggaa tttgttccag cgcgaaggag atgccattcg cgtgggcagc
      181 aacgcaacag ccctgcggag agctggctac ggaatccggc tcacaggatt tctgaggcag
      241 cgctgagccg cttcggtgct ctggtgaaac gacgccgaat gcgaagcgcc ggatctctat
      301 tctgtttctt ggattccgcg gctcagcgcc gcgccgatca tgccggcgag cacaagcatc
      361 cccagcacgc cgacaaatcc gcccaatgcg taggccgttg cgcctcctgc gacgccggcg
      421 ctgccgccaa ggaaggttga ggcgttgaca atgccggaac cctgccctgc ttgcgcgggc
      481 gaaagcgccg acagcgccag ccgcggcgcc aaggcataag gcaccgcaag acccgcgccc
      541 atcgcgaaaa atccgatcgc caacaggacc atgccgcccg cggcggtggt cataccgatg
      601 atggcactgg cgatcgggat caatgacaag ccggcagtca tggcgttgcg cagcccgatg
      661 cgtgccgcca cggccggagc cgacagggcg agcgtgagca gcgccgcgct cagcggcagc
      721 agcgcggcac cggcctccag cgcggtgagg cccattcctt cgcggctctg cgcatagagg
      781 ttgaagtaga gcagcaggct tatgatgctg aacatggcca ggaacccgat ggccacgccc
      841 ataacgaacc cccgccgcgt aaagaaccgc aggttgtcga gcggcgcctc ggcccgcgac
      901 tccacgacca gcagcagcaa cagcgcgatc gcggccagaa cgaacgagac gacaacgggc
      961 agcggggccg cccgcgcatg cggcaatgca tgcagggcaa agacgagcga gaccatgaac
     1021 gtggccagca aaacaaagcc gatccaatcg gcacgacggc gtggcgtaac gtgggcaccg
     1081 gcggacgccg agcccgcgca ggccaggccg gcagccgcgg tcagcatgag cgggacgttg
     1141 agccagaaga tcacccgcca gctcgtgaag tgcgtgagcg cgccgccgat gagcggcccg
     1201 atgctaaagc ctagcatcag gaagccggtc caggcaccga tcgctgctgc cctgcggtcc
     1261 ggccccgcgc tggtatcgac tgcagcgaga gtgctgggca ccgcaaacgc cgcagcgaag
     1321 ccctgcaagg cccgtccggc cagcagcacg gcttgtgtgt cggccacagc aatgatgcag
     1381 gatccgacgc cgaacagcgc gagtccgacc atcgaagtca gtcgcgcgcc aaaccgatcc
     1441 gccgcctggc cgcccagcac gatgaacgcc gcggagacca ccagataggc attgaccgcc
     1501 cattcgacgc cggccgagct gagcgcaagc tcggttcgca tgttcggcaa cgcggccatg
     1561 atggcggtgc tgttgacgcc gaccgcgagc atcgccagac acgacgacca taggaccagg
     1621 gcgggtcttg tccgctgatt caacgctgct gctttcggta gcaagtttaa cggaggcgac
     1681 agctcgctca ttctcggtga tgggtacagg ggagcgtgca atgctgccat cgctacgcgc
     1741 gctgttcaat attcaacggg acgtctttta cctgaatgcc gcctttcgga gcccggcaaa
     1801 tcca
//
LOCUS       DASQCV010000571         7970 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_286337, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000571 DASQCV010000000
VERSION     DASQCV010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 7970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7970
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286337"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1227
                     /locus_tag="VEQ16_08695"
     CDS             <1..1227
                     /locus_tag="VEQ16_08695"
                     /inference="COORDINATES: protein motif:HMM:NF016260.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HYP63952.1"
                     /translation="LVLAAQGTAVHGEILTNLRLTGTAQAPTASGNVTLSGGSVQNIS
                     SGLNLTNIGANVQAQGQNIALQSLTATAGHGRITGHGTISLAGDMPVNLAVNADNASP
                     ISSDMISETLNGNVTLQGAIHGALTLGGNIVIVSADINIPRGLPPSVANLPIINEGEK
                     PPPPPAPPPPIALALDVRAKNRIFIRGDGLFAELGGHLRLGGTLAAPDPEGHFDLIRG
                     NFNLAGRSLQFTSGNIGFNGGGFIPSLDLVASASSATVSNASLTIGGTAAKPTITLSS
                     TPPLPSDEILAQLLFGQGASSLTPFQAASLAAALAQISGVGGGFNPLDKVRSALGLDQ
                     LSLGGTGSGPPTLQAGRYVAPGVYVGATQASNGQGTQVNVQINLYRGLKLTTSTGTSS
                     TGGDSDSVGLTYQFNY"
     gene            1296..2468
                     /gene="lldD"
                     /locus_tag="VEQ16_08700"
     CDS             1296..2468
                     /gene="lldD"
                     /locus_tag="VEQ16_08700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004282143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004457 - lactate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0006089 - lactate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent L-lactate dehydrogenase LldD"
                     /protein_id="HYP63953.1"
                     /translation="MIISAPTDYRAAARRRLPRFLFDYIDGGANAEFTLQRNVDDLTS
                     IALRQRVLKDISNLSLETGLLGQNWTMPVALAPVGITGMCARRGEVQAARAAASAGIP
                     YTLSTVSICSIEEVQRSVDRPIWFQLYVLKDRAFMRDALERAQAAGINTLVFTVDMPV
                     PGSRYRDRHSGMSGPAAPARRFAQAVFKPRWAFDVGLFGRPHDLGNISVYRKQRTGLA
                     DYIGWLNENFDPAIGWADLEWIRAFWKGKMLIKGILDPEDARDAVRFGADGLIVSNHG
                     GRQLDGVLSTTKALPPIADAVGDELTVLADSGVRSGLDVVRMLALGARGVLLGRAYIY
                     ALATDGEAGVANLLRLFATEMRVAMTLIGARSIHDITRDNLVNTPKLDSALLDFHR"
     gene            complement(2512..3147)
                     /locus_tag="VEQ16_08705"
     CDS             complement(2512..3147)
                     /locus_tag="VEQ16_08705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63954.1"
                     /translation="MKTILFPVLTASAIALGGVAMAVPPSLPVRGTINAVNGSALSVT
                     ENAGAKISVTLAPNATITEVIPSSLSDVKPGTYVGTAAIKQPSGIYRALELQVFPETM
                     RGAGMGTRPWNLAPHSTMTNGTVGGLAHAGGTVGTVSGSGDLTLTVNDGSGTKTVLIP
                     SGVPVVSFTPGNTSDLRPGAHVMFFPTTAATSGSVTTSRIIVGENGLTPPM"
     gene            3462..3626
                     /locus_tag="VEQ16_08710"
     CDS             3462..3626
                     /locus_tag="VEQ16_08710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63955.1"
                     /translation="MPSMLAKLHIEVQMLQTEVQTLGHLECQDSGDTQYSFSVAPPPN
                     PDNAPIPSGG"
     gene            complement(3773..3976)
                     /locus_tag="VEQ16_08715"
     CDS             complement(3773..3976)
                     /locus_tag="VEQ16_08715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63956.1"
                     /translation="MPIRMFRRVATSSVALKLIANPVRLSETPPSYRIALSTWREHTD
                     DVLKAWLGIGESELDFLRRQQVI"
     gene            complement(4137..4712)
                     /locus_tag="VEQ16_08720"
     CDS             complement(4137..4712)
                     /locus_tag="VEQ16_08720"
                     /EC_number="2.1.1.100"
                     /EC_number="2.1.1.334"
                     /inference="COORDINATES: protein motif:HMM:NF016107.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HYP63957.1"
                     /translation="MHPGAAVTLFWGLFVLSWLAAAFWTRRGEKRVGLGNELPYRVLL
                     TLGYVLLFHLRQRHPIPGLTWRPTEEVARAAAIASLAGFFFAWWARLHLGALWSAGVT
                     RKPGHHIVDSGPYALVRHPIYTGLIWASFCTLFAYHSGLGPARLLGFALICLGYWMKA
                     KLEEDWLSIELGGTAYASYRARVPMLLPFWR"
     gene            complement(4723..6291)
                     /locus_tag="VEQ16_08725"
     CDS             complement(4723..6291)
                     /locus_tag="VEQ16_08725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HYP63958.1"
                     /translation="MDQPLATTEASTGIPPRRTFAIISHPDAGKTTLTEKLLLFGGAI
                     REAGMVKARQDRRQTRSDWMKIERQRGISVTSSVMTFEFGGAVFNLLDTPGHEDFSED
                     TYRTLTAVDSAVMVIDAAKGIELQTKKLFEVCRLRNIPITTFINKVDREGQNAFELLD
                     EIADTLALDICPMVWPIGMGGLFKGCFDLRNDKLVSAKKPGEEAGEQKFAIPADQQAQ
                     LDEDVELIRAAFPAFDQQSYEEGHLTPVYFGSALKDYSVRELLEGLVANAPPPQPRAA
                     DTRTVAPDEAPVSGFVFKVQANMDPQHRDRIAFTRICSGKFSRGMKLTHSRTGKPMAI
                     QAPIFFFAQDRSLAEEAYPGDIIGIPNHGTLRVGDTLTEGEKLRFTGIPDFAPEILRR
                     IRLADPMKAKQLKKALEDLAEEGVTQVFRPMNGSDWIIGVVGMLQLDVLASRIEQEYN
                     VPIAFETAPFDTARWIFSEDTARLKFFIDVNKSAMSEDREGAPVYLVRNAWELNRMKE
                     NFPELTFSSTRERR"
     gene            complement(6521..6811)
                     /locus_tag="VEQ16_08730"
     CDS             complement(6521..6811)
                     /locus_tag="VEQ16_08730"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase family
                     protein"
                     /protein_id="HYP63959.1"
                     /translation="MVTEFAEIEVKPGMEQDFIAGVEKSRAAFLRSAGCHGLHLVRSV
                     ENPAKFVLHVQWESVAHHMELFRNAPEFQEWRNNVSHCFAVPPNVWHGDTVA"
     gene            6913..7629
                     /gene="aqpZ"
                     /locus_tag="VEQ16_08735"
     CDS             6913..7629
                     /gene="aqpZ"
                     /locus_tag="VEQ16_08735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007436654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015250 - water channel activity [Evidence
                     IEA];
                     GO_process: GO:0006833 - water transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HYP63960.1"
                     /translation="MSKKLAAEFFGTFWLVFGGCGSAVLAAAFPQLGIGFAGVALAFG
                     LTVLTMAYAVGGISGGHFNPAVSLGLAVGGRFSWAELIPYWVAQVVGGIAAASVLYAI
                     ASGKPGFVAGGFASNGYGDLSPGHYALPACFICEVTLTAGFIIVILGATARTAPAGFG
                     PLAIGLALTLIHLVSIPVTNTSVNPARSTAAALFAQTDALGQLWLFWVAPLIGGALGG
                     VIWKLLIEPQEKKGLETEGY"
     gene            complement(7637..>7970)
                     /locus_tag="VEQ16_08740"
     CDS             complement(7637..>7970)
                     /locus_tag="VEQ16_08740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HYP63961.1"
                     /translation="GKGCDNFGPVGPYLVTKDEVPDPQNLSLWTEIDGTRRQNSTTSN
                     MIFGVKFLVAYVSQFITLYPGDIIATGTPAGVGMGIKPEPVFLRPGQEVRMGVQGLGE
                     QRAMAIGG"
BASE COUNT         1445 a         2427 c         2541 g         1557 t
ORIGIN      
        1 ctggtgcttg ccgcgcaggg cacggcggtg catggcgaga tcctcaccaa tctacgcctc
       61 accggcacgg cgcaggcccc caccgccagc ggcaatgtca cgctcagcgg tggcagcgtg
      121 cagaatatca gctcggggct gaacctcacc aatatcggcg ccaatgtgca ggcgcagggg
      181 cagaatatcg cgctgcaaag cctcaccgcc acagccggcc atggcaggat taccgggcac
      241 ggaacgattt cgctggctgg cgacatgccg gtgaatctgg ccgtcaatgc ggacaatgcc
      301 tcgcccatct cgtccgacat gatttccgaa acgctgaacg gcaatgtcac gctgcagggc
      361 gcgattcacg gcgcgctcac gctcggcggc aacatcgtca tcgtcagcgc cgacatcaat
      421 attccacgcg gcctgccgcc gagcgtcgcc aacctgccca tcatcaatga gggcgagaaa
      481 ccgcccccgc cccctgcccc gccgccgccc atcgcgctgg ccctggatgt acgggcgaag
      541 aacaggattt tcatccgtgg cgacgggctg tttgccgagc tgggcgggca tttgcggctg
      601 ggcggcacgc tcgcggcacc ggacccggaa ggacatttcg acctcattcg cggcaatttc
      661 aatctggctg gcaggagcct gcaattcacc agcggcaata tcggtttcaa tggcggcggg
      721 ttcatcccct cgctggacct ggtggccagc gccagcagcg ccacggtgag caatgcctcg
      781 ctgaccattg gcggcacagc ggcgaagccg acgatcacgc taagctcaac cccgcctctg
      841 ccgtccgacg aaattctcgc ccagcttctg tttggccagg gtgcctccag cctcacccca
      901 ttccaggcgg cctcgctggc ggcagcgctg gcgcagattt ccggggtcgg cggcggcttc
      961 aacccgctgg acaaggtgcg tagcgcgctg gggctggatc agctctctct cggcggcacc
     1021 ggctccgggc cgcccacgct acaggccgga cgctatgtgg cgccgggcgt atatgtgggg
     1081 gcgacgcaag cttccaacgg gcagggcacg caggtgaatg tgcagatcaa tctctataga
     1141 gggttgaagc tgacgacatc cacggggacg agttctacag gcggagacag tgattctgtg
     1201 gggctgacat atcagttcaa ttactaattc ggaatggatt gacccgctgc aggtttttat
     1261 aagcaacggc tataaaggcg ccgggagacg ttcgaatgat catttccgca ccaaccgatt
     1321 atcgcgcggc cgccagacgg cgcctgccac gtttcctctt cgattacatc gatggcggcg
     1381 ccaacgccga attcaccttg cagcggaatg tcgacgatct caccagcatc gcgctgcgcc
     1441 agcgtgtgct gaaggatatc tcgaatctga gcctggaaac cggcctgctc gggcaaaatt
     1501 ggaccatgcc cgtcgccttg gcgccagtgg gcataaccgg catgtgcgcg cgccggggcg
     1561 aggttcaggc tgcgcgtgcc gccgcgtcag ccggcatacc ctatacgctc tcgactgtct
     1621 cgatttgctc cattgaagag gttcagcgta gcgtcgaccg gccgatctgg tttcagctct
     1681 atgtgctgaa agaccgcgcc ttcatgcgcg acgcgctgga gcgggcacag gctgccggaa
     1741 tcaacacgct ggtcttcacc gtggacatgc ccgtgcctgg ctcgcgttat cgcgaccggc
     1801 attccgggat gtccggcccg gcggcgccgg cgcggcgttt cgcgcaggcg gtgttcaagc
     1861 cacgctgggc gttcgatgtc gggttgtttg gccggccgca cgatcttggg aatatttccg
     1921 tctatcgcaa acagcgtacc ggtcttgcag attatatcgg ctggctcaat gagaatttcg
     1981 acccggccat cggctgggct gatctggaat ggatccgtgc gttctggaaa ggcaaaatgt
     2041 tgatcaaggg tattctcgac cccgaggacg cacgcgatgc cgtacgcttc ggcgcggatg
     2101 gattgattgt ctccaaccat ggcgggcggc agctggatgg cgtgctttcc acaaccaagg
     2161 ctctgcctcc cattgctgat gcggtggggg atgaactgac cgttctggct gattccggcg
     2221 tccgctccgg gcttgatgtg gtgcgcatgc tggcgcttgg tgcgcgtggg gtgctgcttg
     2281 ggcgagccta tatctatgcg cttgccactg atggcgaagc tggggtggct aatctgctgc
     2341 ggctgtttgc cacggaaatg cgcgtggcca tgacactgat cggcgcgcgc tcgatccatg
     2401 acatcacacg cgacaattta gttaacacac cgaaattaga cagtgcgctt ttggacttcc
     2461 atcgctgaat accagacatt gttctggccg ctggttggca aagcgctcgc cttacatcgg
     2521 tggtgtcagg ccgttttccc cgacaatgat acggctcgta gtaacagacc cactcgtagc
     2581 cgccgttgtt gggaagaaca tcacatgcgc gcctgggcgg aggtctgacg tgtttcccgg
     2641 cgtgaaactg acgacgggta cgcctgaagg aattagaacg gtcttggttc cgctgccgtc
     2701 attgaccgtc aaggtcaggt cgccggaacc gcttaccgtg ccgaccgttc ccccggcatg
     2761 agccaaaccg ccgactgtgc cgttcgtcat cgtgctgtgt ggcgcgaggt tccatggccg
     2821 cgtccccatc ccggcgccgc gcatcgtctc ggggaagacc tgaagctcca gcgcacgata
     2881 tattccgctt ggctgcttga tcgcggctgt tccgacatag gtgccgggtt tgacgtccga
     2941 cagagagctt ggaatcacct cggtgatcgt ggcgttgggg gcgagcgtga cggatatctt
     3001 ggcgccagca ttttccgtga cggacagcgc ggaaccgttt acggcattaa tcgtgccgcg
     3061 gacaggcaaa gatggcggca ccgccatcgc aacgccgcca agagcaatcg cggatgctgt
     3121 cagcaccggg aagagaattg tcttcatgct ggatcctttc tcgtcaacct cttaaggaaa
     3181 gatatccttg cggagctttt attccatgcg gcacaaaatt tttctcaatg agaatttttc
     3241 ggcggccggg aataaatcaa tactgtctgc tgtcttatcg gcaatctcgt ccgcatcatc
     3301 gcggcgctga ggatttcagg agaaatacaa tggacagatt cttgtttgca tgcttcgcag
     3361 cagctggtct gtatggcttt gcggctgcgg cccatgctac ccccgtgcaa gacacatcgc
     3421 aaccgatcat cgtaacagcg gccactcctc agcaggatgg catgccctcc atgttggcga
     3481 agctgcatat cgaagttcag atgctgcaga ccgaagtgca gaccctgggc catctcgaat
     3541 gccaggattc cggcgacacg caatattcct tctccgtcgc accgccaccc aacccggata
     3601 atgcgcctat tccctcgggc ggctgacgcg cccaatgtcc ggccagatca tctggccgga
     3661 catctcatgc cttggccgag tgcggcggca ttcatcatgc tgattggtag attctcgctg
     3721 gtttgaaata gcgcgcagtt cgcaagtgga aaattcagcc tgcgaatttg ctttaaatga
     3781 cctgctgccg gcgcaggaaa tcaagctccg attcgccgat gccgagccag gctttcagga
     3841 cgtcatccgt atgctcacgc caggtggaaa gggcgatacg ataactcggc ggcgtctcgg
     3901 aaagccttac gggattggcg atcagtttca gagcgacgct gctggtcgcc acgcgcctga
     3961 acatgcggat cggcaaacac ctctgacaga cggttgatcg gcccgcagcc aattttctgt
     4021 gcttccagct cactgatcca gcacgcggtg gggaggcgca aaatgcgcgc cagaggatgg
     4081 cgtcgcgctt gcgctcccat ttcgccgtct gttgatcgca tgagcggctg ccggcactac
     4141 cgccagaacg gcagcagcat gggcacgcgg gcgcggtagg aggcgtaggc ggtgccgccc
     4201 agctcgatgc tcagccaatc ctcctccagc ttcgccttca tccagtagcc gaggcagatg
     4261 agggcgaagc cgagcaaccg cgctggaccg agaccggaat ggtaagcgaa gagggtgcag
     4321 aagctggccc aaatcagtcc ggtatagatg gggtggcgga ccagggcgta ggggccggaa
     4381 tcgacgatat ggtggcccgg cttgcgggtg acgccggcgg accagagcgc gccgagatgc
     4441 agccgcgccc accaggcgaa gaagaagccg gcgaggctgg cgatggcggc ggcgcgcgca
     4501 acttcttccg tgggacgcca ggtgaggccc ggaatcgggt gccgctggcg tagatggaac
     4561 agcagcacat agccgagggt gagcagcacg cggtagggca gctcattgcc caggcccacg
     4621 cgcttttccc cccgccgcgt ccagaacgcg gcagcaagcc aggacaggac gaacaacccc
     4681 cagaacaggg tgacggcagc acccggatgc atgggaactg tcttaccgcc tttcgcgggt
     4741 agaggaaaat gttagctccg gaaaattctc cttcatccgg ttcagctccc aagcattgcg
     4801 caccagatac accggcgcgc cctcgcggtc ctcgctcatc gcgctcttgt tcacgtcgat
     4861 gaagaattta agccgcgccg tgtcctcgga gaagatccag cgggcggtgt cgaagggcgc
     4921 ggtctcgaag gcgatgggca cgttatattc ctgctcgatg cggctcgcga gaacatcgag
     4981 ctgcagcatg cccacaacgc cgatgatcca gtccgagcca ttcatcgggc ggaagacctg
     5041 ggtcacgcct tcctcggcga ggtcttccag cgcctttttc agctgcttgg ccttcatcgg
     5101 gtcggcgagg cggatgcggc ggaggatttc aggggcgaaa tcagggatgc cggtgaagcg
     5161 gagtttttcg ccctcggtca gcgtgtcacc gacgcgcagc gtgccgtggt tggggatgcc
     5221 gatgatgtcg cccgggtacg cttcctcggc gagcgagcgg tcctgggcga agaagaagat
     5281 cggcgcctgg atggccatcg gcttgccggt gcgcgaatgg gtcagcttca tgccgcggct
     5341 gaatttgccg gagcaaatgc gggtgaaagc gatgcggtcg cggtgctgcg ggtccatatt
     5401 ggcctgaacc ttgaagacga agccggagac gggggcttcg tccggcgcca cagtccgcgt
     5461 atccgccgcg cggggttgag gcgggggcgc gttggcgacg aggccttcca gcagctcgcg
     5521 gaccgagtag tctttcaacg ccgagccgaa atagaccggg gtgagatgcc cctcctcgta
     5581 ggattgctgg tcgaaggccg ggaaggcggc acggatcagc tccacatcct cgtccaattg
     5641 cgcctgctgg tcggcgggga tggcgaattt ttgctcaccc gcctcctcgc cgggcttctt
     5701 ggcggaaacc agcttgtcgt tgcgcaggtc gaagcagccc ttgaacagcc cgcccatgcc
     5761 gatgggccag accatcgggc agatatccag ggccagcgta tcggcgattt cgtccagcag
     5821 ctcgaacgcg ttctggccct cgcggtccac cttgttgatg aaggtggtga tggggatgtt
     5881 gcgcagacgg cagacctcga agagtttctt ggtctgcaac tcgatgcctt tcgcggcgtc
     5941 gatgaccatc accgccgaat ccaccgccgt gagggtgcgg taggtgtcct cggagaaatc
     6001 ctcgtggcct ggcgtatcga gcaggttgaa gacggcgccg ccgaattcga aggtcatgac
     6061 cgaggaggtg accgagatgc cgcgctggcg ttcgattttc atccagtccg agcgggtctg
     6121 gcggcggtcc tggcgagcct tgaccatgcc ggcctcgcgg atggcgcctc cgaagagcag
     6181 gagcttttcg gtgagggtgg ttttaccggc gtccgggtgg gagatgatgg cgaaggtgcg
     6241 gcgcggcggg atgccggtcg aggcttcggt ggtggcgaga ggctggtcca tcgcggcgcg
     6301 atagcaaaat tccgggccgg gaccaatggg cccggcgggg ttcagggccg cgctgtgtgg
     6361 gagggacggg gaaacatcgt cattgcgagc acagcggagc aatccatctc cgggacgcgg
     6421 cacgaaagtt ggatcgccac gcgtcgtgcg aatgcacgcc tctggcatga cgctcgcgat
     6481 gacgggaccg gcacgaaccg aaccatgttt cccggttcgg ctaagccacc gtatcgccat
     6541 gccacacatt gggcgggacg gcgaagcaat ggctgacatt gttacgccat tcctggaact
     6601 ccggcgcgtt gcggaacagc tccatgtggt gcgccacgct ctcccactgc acatgcagca
     6661 cgaatttcgc cgggttctcc accgagcgca ccagatgcag cccatggcac ccggcggagc
     6721 gcaggaaggc cgccctgctc ttctccaccc cggcgatgaa atcctgctcc atgcccggct
     6781 tcacttcgat ttcggcaaat tcagtgacca ttgcaaatac cctctaaaaa ccagttcatt
     6841 agtcaatata tatcgccctg ttaagccaca ggcttgctga cgctgaaaac aggcttttgc
     6901 ggagggtcat caatgtcgaa aaaactcgcg gctgaatttt ttggaacatt ctggcttgtc
     6961 ttcggcggat gtggctcggc cgtgctggcg gcagcctttc cccagctcgg catcggcttc
     7021 gccggcgtgg cgctcgcctt cgggctcacc gtgctcacca tggcctatgc ggtgggcggc
     7081 atctccggcg ggcatttcaa tccggccgtc tcgctcggcc tcgccgtcgg cgggcgtttc
     7141 agctgggcgg agctcatccc ctattgggtg gcgcaagtgg tgggcgggat tgccgccgct
     7201 tccgtgctct atgccatcgc ctccggcaag ccagggttcg tggcgggcgg gttcgcgtcc
     7261 aatggctatg gcgatctctc gcccggccat tatgcgctgc cggcctgctt catctgcgag
     7321 gtcaccctca ccgcgggctt cattatcgtc attctcggcg ccacggcgag aaccgcgccg
     7381 gcggggttcg ggccgctcgc catcgggctc gcactcaccc tcatccatct cgtctccatc
     7441 cccgtcacca acacctcggt caatccggcc cgctccaccg ccgctgcctt gttcgcgcag
     7501 acggacgcgc tcggccagct ctggctgttc tgggtggcgc cgctcatcgg cggcgctctg
     7561 ggcggggtga tctggaagct gctcatcgag ccacaggaga agaaggggct ggagacggag
     7621 gggtattaac cctgctctac ccgccgatgg ccatggcgcg ctgctctcct aagccctgca
     7681 cgcccatgcg cacctcctgg ccgggacgga ggaaaacggg ctcgggcttg atgcccatgc
     7741 ccaccccggc cggcgtgccg gtggcgatga tgtcgcctgg atagagggtg atgaactggc
     7801 tgacataggc caccaggaat ttcacgccga agatcatgtt agaggtggtg ctattctggc
     7861 ggcgcgtgcc gtcgatctca gtccagagag agaggttttg cgggtcgggc acctcgtcct
     7921 tggtgacgag ataggggccg acggggccga aattgtcaca gcctttgcct
//
LOCUS       DASQCV010000572         2201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_124014, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000572 DASQCV010000000
VERSION     DASQCV010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124014"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..310
                     /locus_tag="VEQ16_08745"
     CDS             77..310
                     /locus_tag="VEQ16_08745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014104720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family transcriptional regulator"
                     /protein_id="HYP63962.1"
                     /translation="MAMPAGEIEALIKAAFPDAKIEIEDLAGDNDHFAANIISEAFRG
                     VSRVRQHQMVYAALQGRMGSELHALALQTSAPE"
     gene            325..660
                     /gene="grxD"
                     /locus_tag="VEQ16_08750"
     CDS             325..660
                     /gene="grxD"
                     /locus_tag="VEQ16_08750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HYP63963.1"
                     /translation="MDNPVFVEIQKHIDGSDVMLFMKGTPLFPQCGFSARVVQILKHA
                     GVPFSSVNVLEDPEIREGIKEFSSWPTIPQLYIKGEFIGGCDIVTEMYQTGELTALLR
                     EKGVVQNAA"
     gene            complement(645..827)
                     /locus_tag="VEQ16_08755"
     CDS             complement(645..827)
                     /locus_tag="VEQ16_08755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63964.1"
                     /translation="MLRRRSQTRPGEQNFYFKTLLLQPIDDCVVESQMAGRPWSWQFI
                     GDEQDVQEAMPSYAAF"
     gene            843..1913
                     /locus_tag="VEQ16_08760"
     CDS             843..1913
                     /locus_tag="VEQ16_08760"
                     /inference="COORDINATES: protein motif:HMM:NF025072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYP63965.1"
                     /translation="MAGPHVRQLGSRILITSPAALAQQIAQALLRILPPELAARLRRT
                     RHKADLVLGAFPSAEDTRWCARAVARLKPEAVLIDTIFRTPVLAEPELKGLNAVIIAH
                     DIFHRRALAMEAAGYSVQPRDLTRAREAVLLGRARAIAAVQPDEAAIIRAMCPEVAVF
                     TAPMPALPCPAPPDVKRIPGRLVFVGGAGLPNLDGMRWFLSEIWPLLGGHGITLDILG
                     DCGTALRRLPPGVRATGRVPDLAPYLHRASLAIAPLRAGSGLKLKLLDYARHGLSTIV
                     TPPALAGFASDPASPFIIAGSAVMFAEAVRRVIQDPPATETAMEYCVRYYGEEASFAG
                     LKAALQNDGGQEKKPHLGTVPL"
BASE COUNT          402 a          709 c          635 g          455 t
ORIGIN      
        1 catatctttg ccacagttgc gcgatgctca tgaggggttt ttccccgcat ggttcgccta
       61 aagaggatca gttgcaatgg caatgccagc gggtgagatc gaggccctga tcaaggccgc
      121 gttccctgat gcgaaaatcg aaattgagga tctcgccggc gataacgacc atttcgccgc
      181 caatatcatc tccgaagcgt tccgcggtgt ctcccgcgtc cgccaacacc aaatggtcta
      241 tgccgcgttg cagggccgca tgggcagtga gctgcatgcc ctggcactgc aaacctctgc
      301 ccccgaataa ggattttttc tcccatggac aacccggttt tcgttgaaat tcagaagcat
      361 attgacggtt ctgatgtcat gctcttcatg aagggcacgc cgctattccc gcaatgcggc
      421 ttctccgcac gggtcgtgca aatcctcaaa catgccggcg tgccattctc gtccgtgaat
      481 gtgctggaag acccagagat ccgcgaaggt attaaggaat tctctagctg gccgaccatc
      541 ccgcagcttt acatcaaggg tgaattcatc ggcggctgcg atatcgtcac cgaaatgtac
      601 cagaccggcg agctgaccgc tctgctgcgc gaaaagggcg ttgttcagaa cgcggcataa
      661 gagggcattg cctcctgaac atcctgttca tcaccgatga actgccacga ccaggggcgg
      721 ccggccatct ggctctcaac cacgcaatca tcgattggct gcagaagcag ggttttgaag
      781 taaaaattct gctcgccggg gcgcgtctgg ctacgccggc gcagcattat gccatcgcgc
      841 ccgtggctgg gccgcatgtg cgccagctcg gcagccgcat tcttatcact tcgccggccg
      901 ccttggccca gcaaatagca caggccctgc tgcgcatcct gccgccggag cttgccgcca
      961 ggctgcgccg cacaaggcat aaggcggatt tggtgctagg cgcctttccc tccgccgagg
     1021 atacgcgatg gtgcgcccgc gccgtggcac ggctcaaacc cgaggcggtg ctcatcgaca
     1081 ccatcttccg cacccccgtc ctggccgagc ccgagctgaa ggggctcaat gccgtcatca
     1141 tcgcgcacga tattttccat cgccgcgctc tggccatgga ggcggcgggc tacagcgtgc
     1201 agccccgtga cctgacgcgc gcccgcgagg ccgtgctgct cgggcgggcc cgcgccatcg
     1261 ccgccgtcca accggatgag gcggccatta tccgcgccat gtgcccggag gtagcggtct
     1321 tcaccgctcc catgcctgcc ctaccctgcc cagcccctcc cgacgtgaag cgcatccccg
     1381 gacggctggt tttcgtcggt ggcgccgggc tgccgaacct ggacgggatg cgctggttcc
     1441 tgtccgaaat ctggccattg ctgggtggcc atggcatcac tttggatatt cttggggatt
     1501 gcggcacggc gctgcgccgt ttgccccccg gcgtgcgcgc caccgggcgc gtaccggacc
     1561 tcgcccccta tctgcaccgc gcctccctgg ccatcgcccc gttacgcgcc ggctccgggc
     1621 tgaagctgaa actgctcgat tatgcacggc acgggctctc caccatcgtc accccgcccg
     1681 ctctggccgg cttcgcgtcc gaccctgcct ctcccttcat catcgcgggc agcgcagtga
     1741 tgtttgccga ggcggtgcgc cgggtcatcc aggatccgcc ggcaaccgag acggcgatgg
     1801 aatattgcgt ccgctattat ggagaagagg ccagcttcgc cgggctgaaa gcggccttgc
     1861 agaatgacgg cggacaggag aagaagccgc atctgggcac tgtcccgctt taaagtgcga
     1921 cttccggttg agtctccaag cttttgttca tctagcagat ttcgttcagt tgggtgccag
     1981 agcgtgacgc gaaaccgtca tacaacatta accaagcgga aacagatttt aagaaaaagc
     2041 tggcgtaaca ggctgctaag ctttaatgac gttttagtca ttcagtggtc attctttttt
     2101 gtgatgaggc ttagggtgag gcaaccacgc cgtgttttcc gtagacgtcc acgcaaccgt
     2161 atctcctggc aggccgtcat tctaggccta gccgccgtcc t
//
LOCUS       DASQCV010000573         4426 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3273160, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000573 DASQCV010000000
VERSION     DASQCV010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4426
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3273160"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(164..1264)
                     /locus_tag="VEQ16_08765"
     CDS             complement(164..1264)
                     /locus_tag="VEQ16_08765"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP63966.1"
                     /translation="MLARILALVLKELTSLWADKKTRFVLIIPPLVQVVLFANAATYD
                     VMHVPLAVWNEDAGVQSSELIRGFTYSRAFAAGPEVFSPMQAQSALESKQAAAVLHVP
                     QDFSADILARRTTHVQLLIDARRSNTALIVSAYASQIVSAYAAKVTRAGAGPVDIALT
                     YLLNPSLASRWFILPALVVILSMMMTTMISALSLARERELGTFEQMLVTPLRPVEIML
                     GKAVPSLLVGLLEANIVLLAALLLFGVPFKGNLLLFQFTLVVFSLAGVAVGLAISSFT
                     HTQQQAILGVFIYAAPAIVISGYASPIENMPLILQWASKLDPITYMLVISRGMFLTRL
                     PVSLIWAQSWPMILIAVALLAMATQAVRRSVV"
     gene            complement(1267..2394)
                     /locus_tag="VEQ16_08770"
     CDS             complement(1267..2394)
                     /locus_tag="VEQ16_08770"
                     /inference="COORDINATES: protein motif:HMM:NF024091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP63967.1"
                     /translation="MSPRWQRLRGLARKEMLQILRDPSALLIAFLLPVVLLFVIGFGL
                     SLDAHKLKLAAVIEAGSEPVRGISEALDASPYLNVYWAPSGQAARLALDAGQVRGILT
                     MREDFAERLVNPQRWPAQAQLAVNATDPNTGTLLSGYVQGAFSSWLAGTMTEDVLTPP
                     GGIALETRFWYNPDLRSSDFIVPGIIVLVMSMTGTLLTALIVSREWERGTMESMLAAP
                     ASMAELVGAKLGVYFVLGMASMAMAAILTVTVFGVPLRGSVLLLALISALFLIFALAQ
                     GLFISTIARNQFVSAQLAFLSTMMPAMMLSGMLFDIASMPRWLQLITCFIPARYFVSA
                     LQTLFLAGNVWSVLLPNLLALAVAAILATAATLAVTHRRLD"
     gene            complement(2391..4109)
                     /locus_tag="VEQ16_08775"
     CDS             complement(2391..4109)
                     /locus_tag="VEQ16_08775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP63968.1"
                     /translation="MTSLAALHGLTQNFAGPTGTIEALRGISAEIAPGVITGVVGPDG
                     AGKTTLLRHLAGLLRPSAGRVEVFGHDMAREAAKAYPYIGYMPQRFGLYEDLSVAENL
                     SLFADLHGLTGAERDERSNMLLEFTGLAPFTRRLASALSGGMKQKLGLACALLARPRL
                     LLLDEPSVGVDPASRRELWRIVERMMAQAEGQMGVVWATSYLDEAERCASVLLLHEGR
                     LLSAVPPADFLAPLQGRVYRVTLPAQKRRQAVAGAKTLPGVLDALVQGDTLRLVLAPG
                     APAPDASRFGGGAVSFVPPRFEDGFIDRLVTLSPQTAPSPALAVEPPHDGKPVIEVRH
                     LIRLFGDFTAVDDVSFSIPRGEIFGLLGPNGAGKSTTFRMLCGLLRPSGGTAHVAGAD
                     LLTAAATARQKLGYMAQKFSLYGELTVRQNLDFFARAYGLRGGARRAAIAEACDRFEL
                     KEVVDSTAAALPLGVKQRLSLAAALLHEPEILFLDEPTSGVDPLNRRAFWARIGQLAD
                     AGVTVLVTSHFMDEAEYCDRLAIISQGRVIATDTPAQLRARVRSEALPDPTLEDAFIQ
                     LVGAAA"
     gene            complement(4132..>4426)
                     /locus_tag="VEQ16_08780"
     CDS             complement(4132..>4426)
                     /locus_tag="VEQ16_08780"
                     /inference="COORDINATES: protein motif:HMM:NF024829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HYP63969.1"
                     /translation="TSVIYSMANTSETWVRAFAPETLLTRVAPGTKVRLRVDGSGKIY
                     HGIIGYVSPVAEFTPKTVETPDLRTQLVYRFRVRVTDANDGLRQGMPVTVTLP"
BASE COUNT          934 a         1465 c         1386 g          641 t
ORIGIN      
        1 atgagaacga tgtcgctcat agacccccct tataatgctc cggtgtcgtt gccggtttgc
       61 gaagcatgac gcctcctcag tgccgcagga gggatgcgcc gtccatgacg taaatcaagt
      121 cagaaaacgc ggcaatttca agccttgaaa taaggcttcg tccttaaacc accgagcgcc
      181 gcacggcctg agtggccatc gccagaagcg ccacggcgat gagtatcatg ggccagctct
      241 gtgcccagat caggctgaca ggcaggcggg tgagaaacat gccgcgcgag atgaccagca
      301 tgtaagtgat cggatcgagc ttgctcgccc attgcaggat gagcggcatg ttctcaatgg
      361 ggctggcata gccggaaatg acgatggctg gggcggcata gatgaacacg ccgaggatcg
      421 cctgctgctg ggtgtgggtg aaggaggaaa tggccagccc caccgccacc ccggccaggc
      481 tgaacaccac gagcgtgaac tggaacagca gcagattgcc cttgaacggc accccgaaca
      541 ggagcagcgc cgccagcagc acgatattcg cctccagcag cccgacgagc agcgacggca
      601 cggccttgcc cagcatgatt tccaccggcc gcaatggcgt caccagcatc tgctcgaacg
      661 tgccgagctc ccgctcgcgc gccagagaca aggcgctgat catggtggtc atcatcatgg
      721 agaggataac gacgagcgcg ggcaggatga accagcggct ggcaagggac gggttgagca
      781 ggtaggtgag cgcgatatca accggccccg cccctgccct cgtcaccttc gccgcatagg
      841 cggaaacgat ctgcgaggca taggcactga cgataagcgc ggtgttggag cgccttgcat
      901 cgatgagcag ctgcacatgg gtggtgcggc gggccaggat atcggccgag aaatcctgcg
      961 gcacatgcag caccgccgcc gcctgtttcg attccagcgc gctttgcgcc tgcatcggcg
     1021 aaaacacctc cggcccggca gcgaaggcgc gcgaataggt gaagccgcgg atcaactcgc
     1081 tcgattgcac cccggcatcc tcgttccaca cggcgagcgg cacatgcatc acgtcatagg
     1141 tggcggcatt ggcgaacagc accacctgca cgagcggcgg gatgatgagc acaaagcgtg
     1201 tcttcttatc cgcccagagc gaggtcagct ccttcagcac cagggccagg atgcgcgcca
     1261 gcatgttcag tccagcctcc tatgcgtcac cgccagcgtc gccgccgtgg ccaggatggc
     1321 agccaccgcc agcgccagga gattgggcag aagcacggac cagacattgc cggccaggaa
     1381 caaggtctgc agcgcggaga caaaataacg cgccgggatg aagcaggtga tgagctgcag
     1441 ccagcgtggc atggaggcaa tgtcgaacaa catgccagac agcatcatgg ccggcatcat
     1501 ggtggagaga aaggcaagct gcgcggagac aaactggttg cgcgcgatgg tggagatgaa
     1561 cagcccctgc gccagggcga aaatgaggaa cagagccgaa atgagcgcca gtagcagcac
     1621 gctgccgcgc agcggcacgc cgaacacggt aacggtgaga atcgccgcca tcgccatgct
     1681 ggccatgccg agaacaaaat aaaccccgag cttcgccccc accagctcag ccatggaggc
     1741 aggtgccgcc agcatggatt ccatcgtgcc acgctcccat tcgcgcgaca cgatgagcgc
     1801 ggtgagcagc gtgccggtca tggacatcac cagcacgatg atgccgggca cgatgaaatc
     1861 ggacgagcgc agatcaggat tataccagaa tctcgtttcg agcgcgatgc cgccgggcgg
     1921 ggtgagcaca tcctcggtca tggtgccggc gagccaggag gaaaacgcgc cctgcacata
     1981 accggacagc aacgtgcccg tattcgggtc cgtggcattc accgcgagct gcgcctgcgc
     2041 cggccagcgc tgagggttaa ccagacgctc ggcaaaatcc tcgcgcatgg tgagaatgcc
     2101 gcgcacctgg ccagcatcca gcgccagccg cgccgcctgc ccgctcggcg cccaatagac
     2161 attgagatag ggcgaggcat caagcgcctc ggaaatgccg cgcaccggct cggacccggc
     2221 ctcgatgacc gcggcgagct tcagcttatg cgcgtcgagc gaaaggccga agccgatgac
     2281 gaagagcagc acgacaggga gcagaaaggc gataagcagg gccgaggggt cgcgcaagat
     2341 ctgcagcatc tccttgcgcg ccagcccgcg cagcctttgc cagcgcgggc tcatgccgcc
     2401 gcccccacga gctggatgaa ggcatcctca agggtcgggt ccggcagggc ttcgctccgc
     2461 acgcgggcgc gcaattgcgc cggcgtatcg gtggcgatga cgcggccttg ggagatgatg
     2521 gcgagccggt cacaatattc cgcctcatcc atgaaatgcg aggtgacgag caccgtcacc
     2581 ccggcatcgg caagctggcc gatgcgcgcc cagaaggcgc ggcggttaag cggatcgacg
     2641 cccgaggtgg gctcatccag gaacaagatt tccggctcat gcaacaaggc ggcggcgagc
     2701 gagaggcgct gtttcacgcc cagcggcaaa gcggcggcag tgctgtccac cacctccttc
     2761 agctcgaaac gatcgcatgc ttcggcgatg gcggcgcgcc ttgcaccgcc acgcaagcca
     2821 taggcgcggg cgaaaaaatc gagattctgc cgcacggtta attcgccata gagcgagaat
     2881 ttctgcgcca tgtagccaag tttctgccgt gccgtggcgg cggcggtgag caaatccgcc
     2941 cccgccacat gcgcggtgcc accggacggg cgcaacagcc cgcacaacat gcggaaggtg
     3001 gtggacttgc ccgcgccatt gggcccgagc aggccaaaaa tctcaccacg aggaatggaa
     3061 aaactcacat catccaccgc cgtgaaatcg ccgaagaggc ggatgagatg gcgcacctcg
     3121 atcaccggct tgccatcatg cggcggttcg accgccaaag caggcgacgg cgcggtttgg
     3181 gggctcagcg tcaccaaccg gtcgataaac ccgtcctcga aacgcggcgg cacgaatgaa
     3241 accgcgccgc cgccgaaccg gctcgcatcg ggcgccggcg cccccggcgc cagcaccagc
     3301 cgcaacgtgt ccccctgcac cagcgcatcc agcacgcccg gcaaagtttt tgcgccggcc
     3361 accgcctgcc gccgtttctg cgccggcagc gtcacgcggt atacccgccc ctgcaaaggc
     3421 gccaggaaat ccgccggcgg cacggcagag agcagccgcc cctcatgcag cagcagcacg
     3481 gacgcgcagc gctccgcttc gtccagatag gaggtagccc agaccacgcc catctgcccc
     3541 tccgcctgcg ccatcatgcg ctcgacgatg cgccataatt cccgccgcga ggccgggtcg
     3601 acccccacgg acggctcatc cagcagcagc agacgcggcc gcgccagcag tgcgcaggcc
     3661 aggcccagct tctgcttcat gccgcccgag agcgcactgg ccaggcgtct ggtgaaaggc
     3721 gccaaccccg taaattccag caacatgttg ctccgctcat cccgctccgc cccggtcagc
     3781 ccgtgcagat cggcaaacag cgagagattc tcagcgacgc tcagatcctc atacagcccg
     3841 aaacgctgcg gcatatagcc aatataggga taggcctttg ccgcctccct cgccatgtca
     3901 tggccgaaca cctccacccg cccggcgctg gggcgtaaga gcccggccag atggcgcagc
     3961 aaggtcgtct tgcccgcgcc gtccggcccc accacgccgg taatcacgcc gggggcaatc
     4021 tccgcgctga tgccacgcag cgcctcgatt gtaccggtgg gtccggcaaa attctgggtc
     4081 agcccgtgca gcgcggccag agaggtcatg gggtcgtcgc gtccagcgcg ctcatggtaa
     4141 tgtgacagtc accggcatgc cctggcgcaa gccatcattc gcatccgtca cccgcacacg
     4201 gaagcgatag accagctggg tacgcaaatc cggcgtctcc accgttttcg gcgtgaattc
     4261 cgccacgggc gacacatagc cgatgatgcc gtgataaatt ttgccactgc catccaccct
     4321 cagcctcacc ttcgtgcccg gcgcgacgcg agtgagcagc gtctccggcg cgaaggcgcg
     4381 tacccaggtc tcggaggtgt tggccatgga atagatcaca ctggtc
//
LOCUS       DASQCV010000574         2152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_953581, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000574 DASQCV010000000
VERSION     DASQCV010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_953581"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2152)
                     /locus_tag="VEQ16_08785"
     CDS             complement(<1..>2152)
                     /locus_tag="VEQ16_08785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007400565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYP63970.1"
                     /translation="PPRAALAGAGMRLAKGDAVSLADIASFLEADGYRHTGTVMEAGE
                     FSRRGGILDVFPAGEAAPVRIDLFGDEIESIRRFDPETQRSGEALPVLEFHPASEVPF
                     DAASVARFRTNWRELFGPQAVQDPLYVSVSEGHRHPGVEHYGPLFSEGMESIFDYLPG
                     ASVSLDHQAEAAVSARLELIDDHYAERRAPARAGEPIYRPIPPGMLYLDREGWEAALG
                     RGPCFEITPFSRPDGGAQGVDIGGRLAPILTGQPMAAMDGFAELKGKWAQSGRTVILA
                     AWSFGSRERLTLMLKEHGIRDIRTIATADEARALPPGVVALAVLPLERGFLTDRLAVV
                     AEQDLLGSRIARPPKRKKRADQFIADATEIEEGDLVVHQDHGIGRYAGLEAVTVNSAA
                     HDCLKLIYDGGDKLFLPVENIDLLSRFGNETDGVALDKLGGASWQARKAKAKNRIQDM
                     AAGLIRLAAERQMREAPLLTPEDGAFAEFCARFPYTETEDQAKAISDVLEDFAAGKPM
                     DRLICGDVGFGKTEVALRAAFVAAMAGTQVAVVVPTTLLARQHFRSFAARFEGLPVKV
                     AQLSRLVTAKEATKVKEGLADGTINIVVGTHALMAQGIKFTELGLLIVDEEQHFGVKH
                     KERLKELKADVHVLTLTATPIPRTLQLALTGVRDLSLITTPPVDRLAVRTFIMPFDQV
                     VVREAIQRERFRGGQVFCVVPRIEDLGRMSERLAE"
BASE COUNT          357 a          719 c          734 g          342 t
ORIGIN      
        1 ctccgcgagg cgttcggaca tgcggcccaa atcctcgatc cgcggcacca cgcagaacac
       61 ctgcccgccg cggaagcgct cacgctgaat cgcctcgcgc accaccacct gatcgaacgg
      121 catgatgaag gtgcgcacgg cgaggcggtc gaccggcgga gtggtgatga gggagaggtc
      181 gcgcacgccg gtgagggcca gctgcagcgt gcgcgggatg ggcgtggcgg tgagggtgag
      241 gacatgaacg tccgccttca gctctttcag ccgctcttta tgcttcacgc cgaaatgctg
      301 ctcttcatcg acgatgagca ggcctagttc ggtgaatttt atgccctgcg ccatcagcgc
      361 atgggtgcca acgacgatgt tgatggtgcc gtccgccagc ccttccttca ctttcgtggc
      421 ttccttggcc gtgaccaggc gcgaaagctg cgccactttc accggcagcc cttcgaaacg
      481 cgcggcgaag gaccgaaaat gctggcgcgc gagcaaggtg gtgggcacca ccaccgcgac
      541 ctgcgtgccg gccatggcgg cgacgaacgc cgcgcgcagc gccacctcgg ttttcccaaa
      601 ccccacatcg ccgcagatga gacggtccat cggcttgccg gcggcgaaat cctccagcac
      661 gtcggagatg gccttcgcct ggtcctcggt ctcggtatat gggaagcgag cgcagaattc
      721 ggcgaaggcg ccgtcttcgg gggtgagcaa cggcgcctca cgcatctgcc gctcggcggc
      781 gaggcggatg aggccggcgg ccatgtcctg gatgcggttc ttggccttgg ccttgcgcgc
      841 ctgccaggag gcgccgccga gtttgtcgag cgccacgcca tccgtctcgt taccgaaacg
      901 ggagagcagg tcgatattct cgacagggag aaacagcttg tcgccgccgt catagatcag
      961 cttgaggcag tcatgcgcgg cgctattcac cgtcaccgct tccagcccgg catagcggcc
     1021 aatgccatgg tcctggtgca cgacgaggtc gccttcctcg atttcggtgg cgtcggcgat
     1081 gaactggtcg gcgcgtttct tgcgcttagg gggacgggcg atgcgcgagc cgagcagatc
     1141 ctgctccgcc accacggcca ggcggtcggt gaggaagccg cgctccagcg gcagcacggc
     1201 gagcgccacc acgcccggcg gcaaggcgcg ggcttcgtcc gccgtggcga tggttcggat
     1261 gtcgcgtatg ccgtgctctt tcagcatcag cgtcaggcgc tcgcggctgc cgaaactcca
     1321 ggcggcgagg atcacggtgc ggccgctttg cgcccatttg cccttcagct cggcaaaccc
     1381 gtccatggcg gccatgggct ggccagtgag gatgggcgcc agccttccgc caatatccac
     1441 gccctgggca ccgccatcgg ggcgcgagaa aggggtgatc tcgaagcacg ggcctcggcc
     1501 cagcgccgcc tcccagccct cgcggtcgag atacagcatg cccggcggga tggggcggta
     1561 gatgggctct cccgcgcggg ctggggcgcg gcgttcggca taatggtcgt cgatcagctc
     1621 cagccgcgcc gacaccgccg cctcggcctg gtggtccagg ctcaccgagg cgccggggag
     1681 ataatcgaaa atgctctcca tgccctcgga aaagagcggg ccgtaatgct ccacgccggg
     1741 atggcgatgc ccctcggaaa ccgagacata aagcgggtcc tgcaccgcct gcgggccgaa
     1801 cagctcgcgc cagttggtgc ggaagcgcgc cacggaggca gcatcgaacg gcacttccga
     1861 ggcgggatgg aattccagca ccggcagcgc ctcgccggag cgctgcgtct cggggtcgaa
     1921 gcggcggatg ctctcgatct cgtcgccgaa cagatcgatg cgcacgggtg ctgcctcgcc
     1981 ggccgggaat acgtcgagaa tcccgccgcg gcgcgagaat tcgcccgcct ccatcacagt
     2041 gccggtatgg cggtagccgt ccgcctccag gaaagaggcg atatcggcca gcgacaccgc
     2101 atcgcccttg gcgaggcgca tccctgcccc ggccaaagcg gcgcggggcg gc
//
LOCUS       DASQCV010000575         1512 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2942682, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000575 DASQCV010000000
VERSION     DASQCV010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1512)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1512)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1512
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2942682"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(56..1303)
                     /locus_tag="VEQ16_08790"
     CDS             complement(56..1303)
                     /locus_tag="VEQ16_08790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63971.1"
                     /translation="MPNRVQDRATQAWLPAKFIWLNILPLLCMAAGLALAGLLPQGPE
                     FHFANPGAITIFFDGRWYENIARHGYHWDPAHAASYADYQNAAFFPLYPFIERLLLAV
                     PGAGSQYGLSALSLGFGLWSNLAFSRFALRLFPEARAFWASAFFACWLASCFLWMGYP
                     TGLINLCVIYCLQDYLAGRHFRAAFWCGLGSAAAPTPVFVAAALCVHGAFEWMKDRAG
                     YAGAGRLILFGLLSVGGLLAFMALLFFEFHDPLVFLKAQNAWVVKPPLAVHLLQFLNP
                     VRYLIVFVHVAHIVGDVACHHLLATAIGRDLADIIFQFLLGFLTVSLGIFGIVVTYRH
                     AHLRPICLASAFVILGYLWFVVSTDSYFYNGVRLCYPALALFLGLADWAAVSKARPCA
                     ILGIFIILAIAETALTKAGYSVI"
BASE COUNT          360 a          477 c          458 g          217 t
ORIGIN      
        1 gccatgcgga ggttcgaatc ctcccgtccc agccattttc atgacactgg tgacctcaaa
       61 tcacgctgta gcccgccttg gtcaaggccg tttccgcgat tgccaggatg atgaaaatgc
      121 ccaggatagc gcagggccgg gctttgctca cggcagccca atccgccaac cccaggaata
      181 gggccagggc cgggtagcac aacctcacgc cattatagaa ataactgtcc gtgctgacga
      241 cgaaccagag atagcccagg atcacaaagg cactcgcaag gcatatgggc ctgagatggg
      301 catgccggta cgttaccacg atcccgaaga tgcccaggct gacagtcaga aaccccagca
      361 ggaactggaa gatgatgtcg gccaggtcac gcccgatcgc cgtcgccagg agatggtggc
      421 aggccacatc gccgacgata tgggcgacat gcacaaacac gatcagatat ctgaccgggt
      481 tgagaaactg cagcagatgc acggccagag gcggcttgac cacccaggcg ttctgggctt
      541 tcaggaatac tagcggatcg tgaaattcga aaaacagcaa cgccatgaag gccaacaatc
      601 cgccgaccga cagcaggcca aacagaatca gccgccccgc gccggcatat cccgcccggt
      661 ccttcatcca ttcaaaggca ccatgcacgc aaagcgccgc agcgacgaac acgggcgtcg
      721 gcgcggccgc gctgccgagg ccacaccaga aggccgccct gaaatggcgg ccggcgagat
      781 aatcctgcag gcagtagatg acacagagat tgatcagccc cgttggatag cccatccaca
      841 gaaagcagga ggccagccag caggcgaaga aggcgctggc ccagaaggct ctggcctccg
      901 ggaacaaccg cagcgcgaac cggctgaagg cgagattgga ccataacccg aagcccaggc
      961 tcagcgccga caacccatat tggctgccgg cgcccggcac ggcgagcagc agccgctcga
     1021 tgaacgggta gagcgggaaa aaggcggcat tctggtaatc ggcatagctg gcggcatgcg
     1081 ccgggtccca gtgatagcca tggcgcgcga tgttctcgta ccagcggcca tcgaaaaaga
     1141 tcgtaatggc gccgggattc gcgaaatgga actcaggccc ctgcggcaga aggcccgcca
     1201 aagcgagccc cgcggccatg cagagcagcg gcaggatgtt cagccagatg aatttcgccg
     1261 gcagccaagc ctgcgtggca cggtcctgta cccggttagg cactctagct tcgccagcat
     1321 tatcggcacg cacaggacgt caggaccgcg gaaatgtcag tgtcaccgtg cagccctggc
     1381 cgggcgccgc atggatgctc atcgcgccat cgagattgcg caccacccgt gccacgatgg
     1441 ccagccccag ccccttgccc gtggcattgc cgttggtggt gaaaaacggc tcctgggcgc
     1501 ggcgtagaat ct
//
LOCUS       DASQCV010000576         3561 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1618098, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000576 DASQCV010000000
VERSION     DASQCV010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3561
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1618098"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..669)
                     /gene="rph"
                     /locus_tag="VEQ16_08795"
     CDS             complement(<1..669)
                     /gene="rph"
                     /locus_tag="VEQ16_08795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003624868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HYP63972.1"
                     /translation="MRPSGRNFNELRKISIETGFSHHAEGSALIKIGRTEVLCTASVE
                     GKVPPFMRGQGEGWVTAEYGMLPRATHTRGDREAARGKQSGRTQEIQRLIGRSLRAVV
                     DRKAMGEISVTLDCDVLNADGGTRCASITGAYVALALAFRKLRDTKVISSIPFIGQVA
                     AVSCGIYKGQPVLDLDYDEDSAADADANFILTAAGGIVEIQATAEKSTFDDAGFQALL
                     GLARQ"
     gene            719..1783
                     /gene="hrcA"
                     /locus_tag="VEQ16_08800"
     CDS             719..1783
                     /gene="hrcA"
                     /locus_tag="VEQ16_08800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012224625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HYP63973.1"
                     /translation="MDHRSKTPPRLPPGLDVRSAAVLREIVEQYVETGEPTGSRTLSR
                     LLPQKLSPATIRNVMADLTEAGLLFAPHTSAGRLPTERGLRLFVDGLLQFGELSEEER
                     RAINITLAQSGRSLQDTLAQASAMLSGLSAAAGLVLAPKGDGPVKHIEFVPLSPGRAL
                     VVLVSADGQVENRIIDTPPGLPPSALQQAGNYLNAQLSGLTLPELRRRVGAEIAANRT
                     ALDELTNAVVEAGLASWANEGRTGALILRGQGRLLEDIDQLEKLSAIQALFERLEAEE
                     TMLRLLELAESSDGVRIFIGAESGLFGAAGVSMVVAPARNAQDRIVGAIGVIGPTRIN
                     YGRIIPVVDYTARVIGRLLG"
     gene            1789..2658
                     /locus_tag="VEQ16_08805"
     CDS             1789..2658
                     /locus_tag="VEQ16_08805"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP63974.1"
                     /translation="MKIAFIGLGQMGHGMAANLIKAGHEVTLYNRSAAKAEGLGGIVA
                     ATPAAAAKRAEVVFTMLADDKALDGVVHGEHGLLSTLPKGAIHVSCSTISVATAEALT
                     KAHKQAGQKFVSAPVFGRPEAAAAAKLFVAAAGAEADIAICQPLFDAIGQRTFILGTE
                     PSRANLVKLSGNFLIAAVIESLGEALALVAKGGVDERAYLELLTSTLFSAPVYKTYGN
                     LIVEQKFEPAGFAAPLGQKDIRLVLAAAEGLNVPLPLASLLRDRFLALLAQGGAALDW
                     SAIGRLAAKDAGL"
     gene            2719..>3561
                     /locus_tag="VEQ16_08810"
     CDS             2719..>3561
                     /locus_tag="VEQ16_08810"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase 87 family protein"
                     /protein_id="HYP63975.1"
                     /translation="MFRVSDKGWMLRHGLGLVCAALVLIFAALHALAPHTYLFFTRIP
                     DGAAKLHPFVDLRAILQGGACWRQGVDVYRPSACLDGGVFNYSPLLLRVAYLPIGPED
                     TLVGGLLFCAAYAAALATLPPPRNGKEWALYAACAFSPVAYYALEQGNLDALIFALIV
                     LALRLPWRWRAGAYAIFAAGAAAKFYPASLFILALRESRRMLTLLAGAGGIALALAVL
                     LYGPDLLSAVVQLPSGTPFRASFGRIDLPRGLAMLHFWPRNHTQLDGWALALLALGIS
                     AWRRP"
BASE COUNT          542 a         1146 c         1222 g          651 t
ORIGIN      
        1 ctgccgtgcc agccccagca gcgcctggaa ccccgcatcg tcaaacgtcg atttttcagc
       61 cgtcgcctgg atctccacaa tcccgccagc cgccgtcagg ataaaattcg catctgcgtc
      121 agccgccgaa tcctcgtcat aatccaaatc cagcacaggc tggcccttat agataccgca
      181 ggacaccgcc gccacctggc cgatgaacgg gatggaggaa atcaccttcg tatcgcgcag
      241 cttgcggaag gccagcgcca aagccacgta ggcgccggtg atggaggcgc agcgcgtgcc
      301 gccatcggcg ttcagcacgt cgcaatcgag ggtgacggaa atctcgccca tcgccttgcg
      361 gtccaccacg gcgcggagcg aacggccgat gaggcgctgg atttcctggg tgcggccgga
      421 ctgttttccg cgcgctgcct cgcggtcgcc gcgcgtatgg gtggcgcggg gcagcatgcc
      481 gtactcggcc gtcacccagc cctcgccctg gccgcgcatg aagggcggca ccttgccctc
      541 cacgctcgcc gtgcacagca cctcggtgcg gcctattttg atgagcgccg agccctcggc
      601 atggtgggaa aaccctgtct caatggagat tttccggagt tcgttgaaat ttctgcctga
      661 gggccgcatg atctgtctcc tatgctagat ggcgctgctc atatccgaga cggagacaat
      721 ggaccatagg agcaaaaccc cgccgcgcct gccaccgggc ctcgatgtgc gctcggccgc
      781 ggtgctgcgc gagatcgtgg agcaatatgt ggaaaccggg gagccgaccg ggagccggac
      841 gctgtcgcgc ctgctgccgc agaaactctc gccggccacc atccgcaacg tgatggcgga
      901 cctcaccgag gccgggctgc tgtttgcgcc gcatacctcg gcggggcggc tgcccaccga
      961 gcgcggcctg cggctgttcg tggacgggct gctgcaattc ggtgaattat cggaggaaga
     1021 gcggcgcgcc atcaatatca ccctggccca atccggccgc agcctgcagg acacactggc
     1081 ccaggcctcc gccatgctct ccgggctctc cgccgccgcg ggcctggtgc tggcgcccaa
     1141 gggggatggg ccggtgaaac atatcgagtt cgtgccgctc tcgccggggc gggcgctggt
     1201 ggtgctggtc tcggccgacg gccaggtgga gaaccgcatc atcgacaccc cgcccggcct
     1261 gccgccgagc gcgcttcagc aggcgggcaa ttacctcaac gcccagctct ccggcctcac
     1321 tctgccggaa ttgcggcggc gcgtgggtgc cgaaatcgcc gccaaccgta cggccctgga
     1381 tgagctgacc aacgcggtgg tggaggccgg cctcgccagc tgggccaatg aggggcgcac
     1441 cggcgcgctc atcctgcgcg gccaggggcg gctgctggaa gatatcgacc agctcgaaaa
     1501 actctccgcc atccaggctc tgttcgagcg gctggaggcg gaggagacga tgctgcggct
     1561 gctcgagctg gcggaatcat cggacggcgt gcgcatcttc atcggcgcgg aatccggcct
     1621 gttcggcgcg gcgggcgtct ccatggtggt ggcgccggcg cgcaacgcgc aggacagaat
     1681 tgtcggcgcc ataggtgtca tcggcccgac gcgcatcaat tatgggcgca tcatcccggt
     1741 ggtggactat accgcgcggg tcatcgggcg tttgctgggg taggtcgcat gaaaatcgcg
     1801 tttatcgggc tcgggcagat gggccatggc atggccgcca atctcatcaa ggcggggcat
     1861 gaggtgacgc tctataaccg ctcggcggcg aaggctgagg ggctgggcgg cattgtggcg
     1921 gcaacccccg cggcggcggc gaaaagggcc gaggtggtat tcaccatgct ggccgacgac
     1981 aaggcgctgg atggcgtggt gcatggcgag cacgggctgc tgagcacgct gccgaaaggg
     2041 gcgatccacg tatcctgcag cacgatttcc gtggccaccg ccgaggcgct gacgaaagcg
     2101 cataagcagg cggggcagaa attcgtttcg gcaccggtgt tcgggcggcc ggaagcggcg
     2161 gcggcggcaa aattattcgt ggccgcggcg ggtgctgagg cggatatcgc catttgccag
     2221 ccgcttttcg acgccatcgg gcagcggact tttatcctgg gcacggaacc gtcacgggcg
     2281 aatctcgtga agctgagcgg gaattttctc atcgccgcgg tcatcgaatc gctcggcgaa
     2341 gcgctggcct tggtcgccaa gggcggggtg gatgagcggg cttatctgga gctgctgacg
     2401 tccaccttgt tctccgcacc cgtgtacaag acctacggca atctcatcgt ggagcaaaaa
     2461 ttcgagccgg cggggtttgc cgcgcctttg ggccagaagg atatccgcct ggtgctggcg
     2521 gcggcggagg ggctgaacgt gccgctgccg ctcgccagcc tgctgcgcga ccggtttctg
     2581 gcgctgctcg cccaaggcgg ggcggcgctg gactggtccg ccattgggcg gctggcagcg
     2641 aaggatgccg gactgtaggc tgtagacttt cccgtccacc ccccttggcg cggccgcgcc
     2701 agcccggcat gaggaggcat gtttcgcgtc tccgacaaag gctggatgct gcgccacggg
     2761 ctggggctgg tttgcgccgc cctggtgctg atctttgccg cactgcatgc gctggcgccg
     2821 catacctacc tgttcttcac ccggattccg gatggggcgg cgaagctgca cccgttcgtg
     2881 gatttgcgcg ccatcctgca gggcggagca tgctggcggc agggggtgga cgtgtaccgc
     2941 cccagtgcct gcctggatgg cggcgttttc aattattcgc cgctgttgct gcgggtggcc
     3001 tatctgccca tcgggcctga ggacacgctg gttggcggac tgctcttctg cgccgcctat
     3061 gccgcagcgc tagccacgct gccaccgcct cggaatggaa aagaatgggc gctttacgcc
     3121 gcctgcgctt tttcgcccgt tgcctattac gcgctggagc agggcaatct cgatgcgctt
     3181 atctttgccc tcatagtgct ggcgctgcgc ctgccctggc gctggcgggc cggcgcctac
     3241 gcgattttcg ctgccggtgc ggcggcaaaa ttttatccgg cttcattgtt cattcttgct
     3301 ctgcgcgaga gccggcgcat gctgacgctg ctggccggcg cgggcggcat cgcgctggcg
     3361 ctggccgtgc tgctttacgg gcctgatctg ttatctgccg tggtgcagct accttcgggc
     3421 acgccgttcc gcgccagttt cgggcgcatc gacctgccgc gcgggctggc gatgctgcat
     3481 ttttggcccc gcaatcacac gcagctggat ggctgggcgc tggcgctgct ggcgctgggc
     3541 atctcggcat ggcgccgccc t
//
LOCUS       DASQCV010000577         1745 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2611677, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000577 DASQCV010000000
VERSION     DASQCV010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2611677"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..555
                     /locus_tag="VEQ16_08815"
     CDS             <1..555
                     /locus_tag="VEQ16_08815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III PLP-dependent enzyme"
                     /protein_id="HYP63976.1"
                     /translation="VDVLDIGGGFPAAYPDMDPPPLGAFMAEIDAAYDRLGMPWLKLW
                     AEPGRALVAGGGSVVVQVQLRRGNMLYINDGVYGALADAGALKFRFPTRLLRKGHSPG
                     APDAAFGFFGPSCDSLDVMHGPFILPDDVQEGDWIEIGQLGAYGTCLRTAFNGFDRAA
                     LVEVRDRAMLEIGGSEPDAARRAA"
     gene            656..>1745
                     /locus_tag="VEQ16_08820"
     CDS             656..>1745
                     /locus_tag="VEQ16_08820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014240772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase NADP-binding
                     domain-containing protein"
                     /protein_id="HYP63977.1"
                     /translation="MPQDIATKHARFSGRLLMLGCGSIGQGVLPLLLRHIDMPRENIS
                     ILTSDARGSKVAAEFGIREEIIPVTRENIRELISARVGAGDFLLNLSVDISSVALIEI
                     CRELGVLYLDTCVEPWAGGYTDLSLSPSLRSNYALRESALALRTDADVPTAVVAHGAN
                     PGLVSHFVKQALLNLAADTGLATDVPANRAGWGKLAQKLGVKVIHIAERDTQVANVAK
                     QRGEFVNTWSIDGFVGEGCQPAELGWGTHEKALPADGLRHEFGCGAAIYLNRPGASTR
                     VRTWTPNEGPFHSFLITHNEAISIADYFTVTENGAATYRPTVHYAYHPCDDAVLSVHE
                     LAGKNWEMQPSQRLMQDEIVSGIDELGVL"
BASE COUNT          287 a          624 c          518 g          316 t
ORIGIN      
        1 gtcgacgtgc tggacattgg cggtggcttc ccggccgcct acccggacat ggacccgccc
       61 ccgctaggcg ccttcatggc ggaaatcgac gcggcctatg accgtcttgg catgccctgg
      121 ctgaagctct gggccgagcc cggccgcgcg ctggtcgccg gcggcggctc cgtggtggtg
      181 caggtgcagc tgcgccgcgg caacatgctg tacatcaatg acggcgtgta tggcgcgctg
      241 gcggatgcgg gggcgctgaa attccgcttc cccacccgcc tgctgcgcaa gggccattcc
      301 cccggcgcgc cggatgcggc gttcggcttc ttcggcccga gctgcgattc actcgacgtc
      361 atgcacggcc ccttcatcct gccggatgat gtgcaggagg gcgactggat cgaaatcggc
      421 cagctcggcg cttatggcac ctgcctgcgc accgccttca acggtttcga tcgcgccgcc
      481 ttggtggaag tgcgtgaccg cgccatgctg gaaatcggcg gttccgagcc ggatgccgcc
      541 cggcgcgccg cgtaaaaccg gccgcgtaag acatttcctt taaatttcta tccccagggt
      601 tgaggcccgg cctcagccct gggaaggctt tcccttcatc acaggagtac ccacgatgcc
      661 acaagacatc gcaaccaaac atgcgcgctt ttccggccgc ctgctcatgc tgggctgcgg
      721 ctccattggc cagggcgttc tgcccctgct gctgcgccat atcgacatgc cgcgcgagaa
      781 catctccatc ctcacctcgg atgcgcgcgg cagcaaagtt gcggccgaat ttggcatccg
      841 ggaagaaatc atccccgtca cccgcgaaaa catccgcgag ctgatttccg cccgtgtcgg
      901 cgcgggggat ttcctgctca acctctccgt cgacatctcg tccgtcgcgc tcatcgaaat
      961 ctgtcgcgag ctgggggtct tgtatctcga cacctgcgtc gagccctggg ccggcggcta
     1021 taccgacctc tccctcagcc cctcgcttcg ctccaactat gcgctgcgcg aaagcgcgct
     1081 ggccctgcgc acggacgccg atgtccccac cgccgtcgtc gcccatggcg ccaatcccgg
     1141 cctggtctcg catttcgtca agcaggcctt gcttaacctt gccgctgata ccggcctcgc
     1201 cacggacgtg cccgccaacc gcgccggctg gggcaagctt gcgcagaaac tgggcgtcaa
     1261 agtcatccac atcgccgagc gtgatacgca ggtggccaac gtggccaagc agcgcggcga
     1321 attcgtcaat acctggtcca tcgatggctt cgttggcgaa ggctgccagc ccgccgaact
     1381 cggctggggc acgcatgaaa aggcgctccc cgccgacggc ctgcgccacg aattcggctg
     1441 cggcgccgcc atctatctca accgccccgg cgcctccact cgcgtccgca cctggacgcc
     1501 gaatgaaggc ccgttccata gcttcctcat cacccataac gaggccatct cgatcgccga
     1561 ttatttcacc gtcacggaaa acggcgcggc cacctaccgc ccgaccgtgc attacgccta
     1621 ccatccgtgc gacgatgccg tgctctcggt gcatgagctc gccggcaaga actgggagat
     1681 gcaaccgagt cagcgcctga tgcaggacga aatcgtcagc ggcatcgacg agctcggcgt
     1741 gctgc
//
LOCUS       DASQCV010000578         1582 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2447007, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000578 DASQCV010000000
VERSION     DASQCV010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2447007"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            354..1154
                     /locus_tag="VEQ16_08825"
     CDS             354..1154
                     /locus_tag="VEQ16_08825"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP63978.1"
                     /translation="MQSIKAALAPDSKRWGEALRTAFPFVVVGALWEVAARLQIFPVR
                     LFPSLETIAAAFVRLTISGVLPHHAADTVLRLIVGFALAASIGVATGVAMGRSRLAED
                     LALPLVSMAAPIPGIAYAPLFLLWFGPGNISAVLLVGFASAFPIILNTWTGVKAVKDV
                     WLRSALALGADGRRLFHKVILPGALPYILTGLRLGFAQAWRILVGVEMLAAVSWGLGW
                     MIFGAREFLNTDVMLAGVAVIGMIGLTLEKLVFKPIEDFTVVRWGMMT"
     gene            1151..>1582
                     /locus_tag="VEQ16_08830"
     CDS             1151..>1582
                     /locus_tag="VEQ16_08830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP63979.1"
                     /translation="MSTFADHTRSIRRAAVSLFLAAAAYESIARSGVFPPSLLPSLVA
                     VAGALVDGVLDGSLPAHALATLYRVLMGVGLAIAFGLPLGILMGRFRPVESFFLPLAS
                     ALMPIPSLAWVPVFILWLGLGNATAIGIVLYAALFPLLLNAR"
BASE COUNT          230 a          499 c          501 g          352 t
ORIGIN      
        1 gtccgctgta cctccgattc caggcatgca agtggtggtc gggccgaatt acgctctgtg
       61 ccattatgta tggcccggcc gtgcgtcgca aggcagaacg ttgagcggtc gaacgtaaaa
      121 gctgcatcaa tgcatcagac ctctggtgtg gagcattgat gctccgggcc aggatgggta
      181 tccgcacgca tccgacactg actaacggct agacctcgaa gggggtcatc atggcaccca
      241 gtcttggacg cggcagttct ctctggccat cacgcagcac tgtgcagtcg gagccgaaag
      301 cagatacgct gaacccgtgc gcggcgatgc gctggcggag cgtctgatct gcaatgcaaa
      361 gtatcaaagc ggcattggcg cctgattcca agcgatgggg cgaggctctg cggacagcct
      421 ttccgttcgt agtggtcggt gccctgtggg aggtcgctgc ccgcctgcag attttcccag
      481 tgcgcctatt tccatcgctg gagaccattg ccgctgcctt cgtgcgcctt acgatttcgg
      541 gagtactccc tcaccacgcc gcggataccg tcctacggct gattgttggc tttgcgctgg
      601 ccgccagcat cggcgtcgcg accggcgtcg ccatgggtcg gtcgcggctg gcggaagacc
      661 tggcgctgcc gctagtcagc atggctgcgc cgatccccgg gattgcctac gcgcctctgt
      721 tcctgctctg gttcgggccc ggcaacatct cggcagtcct gctggtcggg ttcgcatcag
      781 ccttcccgat catcttgaat acgtggaccg gcgtgaaagc ggtgaaggac gtgtggctac
      841 gatcggcact cgccttgggg gctgatggcc gccgcctgtt ccataaggtg atcctgccgg
      901 gcgccctgcc ctacatcctg actggcctgc gcctcggctt cgcgcaggca tggcgcatcc
      961 tcgtcggcgt agagatgctg gcggccgtgt cctggggcct cggctggatg atctttggcg
     1021 cgcgagagtt tttgaacacg gacgtcatgc tggcgggtgt cgcggtcatc ggcatgattg
     1081 ggctgaccct ggaaaagctt gtgttcaagc ccatcgagga tttcacggtt gtgcgctggg
     1141 gcatgatgac atgagcactt tcgccgacca cacccgttcg atacgccgcg cggccgtctc
     1201 gctattcttg gctgccgccg catacgagag cattgcccgc agcggcgtct ttcccccctc
     1261 gctgctgcct tcactggtgg ccgtggcggg agctcttgtt gatggagtgc tggatggaag
     1321 tctgccggca cacgcgctcg ccacgctcta cagggtgctc atgggcgtgg ggcttgcaat
     1381 cgcgttcggc ctgccgcttg gcatcctgat gggccgcttc cgcccggtcg aaagcttctt
     1441 cctgccgttg gctagtgcgc tgatgcccat cccttcgctg gcctgggtgc cggtgttcat
     1501 cctgtggctc ggcctcggca acgccaccgc tatcggcatc gtactctatg cagccctctt
     1561 ccccttgctc ctcaacgccc gg
//
LOCUS       DASQCV010000579         4611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1618834, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000579 DASQCV010000000
VERSION     DASQCV010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4611
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1618834"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(148..840)
                     /gene="fliP"
                     /locus_tag="VEQ16_08835"
     CDS             complement(148..840)
                     /gene="fliP"
                     /locus_tag="VEQ16_08835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495579.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HYP63980.1"
                     /translation="MTDPSPTLTLIKSLTGNGGAEYSLDVQTLLVITTLAFLPGLMLL
                     MTSFTRIIIVLSVLRQALGLQTTPPNMVLAALALALTMFVMRGVVQQEQDKALDPYLA
                     GQINFTQAVTAAIPPEQDFMLAQTRKAPLHLFVDLSGGHYATPKDVPLTVLVPAFATS
                     ELETAFQISFLIYIPFVLIDLAVASILMSLGMIMVSPTLISLPLKLLVFVSIHGWVLV
                     LGMLANSFAASG"
     gene            complement(833..1102)
                     /locus_tag="VEQ16_08840"
     CDS             complement(833..1102)
                     /locus_tag="VEQ16_08840"
                     /inference="COORDINATES: protein motif:HMM:NF016250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliO"
                     /protein_id="HYP63981.1"
                     /translation="MDGANLTATASTLASLLALLFLLAGAAWLARRLRGRLPGRGQDG
                     AIAIIASRALGGGHVLVIAEAEGKRFLIGVSRAQMSVLGRLGAHD"
     gene            complement(1102..1563)
                     /locus_tag="VEQ16_08845"
     CDS             complement(1102..1563)
                     /locus_tag="VEQ16_08845"
                     /inference="COORDINATES: protein motif:HMM:NF015693.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated FliL family
                     protein"
                     /protein_id="HYP63982.1"
                     /translation="MKKIILIAAGAAILLGGGIGGTFYFLSAQHPSASKAVAPLPKPI
                     YFAQLGDLIVTVPADVDDSTTAYVQITLQFASFDTNAVNEFSNLQPIIKSEIITLLMQ
                     KTAKSLMDPTTHDALLKSCLGIANQVLDKSANYAPPNPFIAAYITNIVEQN"
     gene            complement(1573..3498)
                     /locus_tag="VEQ16_08850"
     CDS             complement(1573..3498)
                     /locus_tag="VEQ16_08850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body protein"
                     /protein_id="HYP63983.1"
                     /translation="MSGIANAINTALSGLELFEAGISTVSNNLANATTSGYVAESVNA
                     TTQVGAPNQPGDGVQPAQIVRAASSFAAAQLRNANTANAAASAQSTSLTAISNALTNN
                     GDIQTAINQFFEDVSTLASNPTSAAQRQTVLADAQTVVSSFQTASSVINDSIAGASTT
                     LTQSVSSANNLLNQLASINKTLATTPSQPSLLDQQQASLNSLSQLLPVSVITQSNGSV
                     IVTSGGTVLLDQSGAQALSVTSNNPPGVTAGNSNVPVTASNDDGAIGGAIGTMQSGAS
                     ALQSLSSVATIFATQVNTAQAEGLTPSGTQGQALFSVPAPSVTPASSNTGSATITAQI
                     ANAAALPVDGGPFTLSYNGTSWSAKDQANGQSYSVTGTPSSFAGIALAITGTAAAGDS
                     FTVNPAPNAATGLKVAATGTNDIATADPYVGTAGTLQSDGSISDTNAGTITTGTDSVT
                     SAPASGAAVIPASYYGQNLQVNFTSSTSYTISTTASPGTVIASGSLSGNDGDIAIAYP
                     PGAASGQYWQLPISGSPVAGDVLTLTPGGASSGSNAQRMATLWTTPGTTSAGTMEQAV
                     IGLSTGLGANAQAAQQLATATAAQVTTTTNNLQTVAGVNTDQQAVILTNYSQAYQAAA
                     QAISAAHTMFESLLQSV"
     gene            complement(3495..4376)
                     /locus_tag="VEQ16_08855"
     CDS             complement(3495..4376)
                     /locus_tag="VEQ16_08855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004040 - amidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HYP63984.1"
                     /translation="MMIAPVTAQGTPAEKPPLAATVQHMAGMLWDQMLQAMNANGLSA
                     DTLGTGGGDFQSLFLWNLAQNDFGKYDTGLIAAAMRQVGGAASQVPEAAAPDIATPLA
                     RLLPAPISAAVEIAAALPQAAGVSGDLVAQAKSFAKTIWPQITAAAQTLGVPPVAVLA
                     QTALETGWGASAPGNNLFGIKAADGQAGSARATHEMVDGVLMPQTANFRDYETPSDAV
                     SDYVGLIQSGYQNAAGQSSVAGFAQALQDGGYATDQNYAAKIVNIADSPLMAQVLQAV
                     GGASSQSSNTASKTGGP"
     gene            complement(4373..4489)
                     /locus_tag="VEQ16_08860"
     CDS             complement(4373..4489)
                     /locus_tag="VEQ16_08860"
                     /inference="COORDINATES: protein motif:HMM:NF014206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HYP63985.1"
                     /translation="MQDVAAALNAVGATPSDLIAIIEALKQAGAINGTIKVI"
BASE COUNT          811 a         1306 c         1626 g          868 t
ORIGIN      
        1 agcgcgaagg tggcgtcctc gatctgcaac gccgcctgca ggaaggaggt ggcgaagccg
       61 acggcgagga gcagaaacac gatgggcgcg agcacggata attccgtggc gaaggcgatg
      121 tgcaggagct ggaggtaaag cggcatctca tccgctcgca gcgaaactat tcgccagcat
      181 gcccagcacc agcacccagc catggatgga gacgaacacg agcaatttca gtggcagcga
      241 gatgagcgtt ggcgaaacca tgatcatgcc gagcgacatg aggatggagg cgacggcgag
      301 atcgatgagg acgaagggga tgtagatgag gaaggagatc tggaacgcgg tttccagttc
      361 ggaagtggcg aaggccggga cgagcacggt gagcggcacg tccttcggcg tggcgtaatg
      421 gccgccgctc agatccacga acagatgcaa aggcgccttg cgggtctgcg ccagcatgaa
      481 atcctgctcc ggcggtatgg cggcggtgac ggcttgggtg aaattgatct gaccggcgag
      541 ataagggtcg agcgccttgt cctgctcttg ttgcactacg ccgcgcatca cgaacatggt
      601 gagcgcgagt gcgagcgccg ccaataccat gttgggcggc gtggtctgca acccaagcgc
      661 ctggcgcaac accgagagaa cgatgatgat gcgtgtgaag ctggtcatca acagcatcag
      721 ccccggcagg aaggcgagcg tggtgatgac gagcagagtc tgcacatcga gcgaatattc
      781 cgcgccgcca ttgccggtga gggatttgat gagggtgagg gtgggagacg ggtcagtcat
      841 gggcgcccag cctgccgagg acactcatct gcgcgcggct gacgccgatg agaaagcgtt
      901 ttccctccgc ctcggcgatg acgagcacat ggccgccacc caaagcccgg ctggcgataa
      961 tggcaatggc gccatcctgc ccgcgccccg gcagccgccc gcgcaaccgc cgcgccagcc
     1021 aggccgcgcc cgccagcaga aacagcaggg ccagtagcga ggcaagggtt gaggcggttg
     1081 ccgtaagatt agcaccgtcc atcaattctg ctcgacaatg ttggtgatat aggccgcgat
     1141 aaagggattg ggcggcgcgt aattggccga tttgtccagc acttggttgg cgatgccgag
     1201 gcaagatttc agcagcgcgt catgggtcgt ggggtccatc agcgattttg ccgttttctg
     1261 catgagcagc gtgatgattt cggatttaat gatgggctgc agattgctga actcgttcac
     1321 cgcattcgta tcgaaactgg cgaattgcag tgtgatctgc acataggcgg tggtggagtc
     1381 atccacatcc gcgggtacgg tgacgatgag atcgcccagt tgcgcaaaat agatgggttt
     1441 gggcagcggg gcaaccgcct tgctggcgct gggatgctgc gcggagagaa aatagaacgt
     1501 gccgcctatg ccgccaccga gtagaatggc cgcgcccgcg gcgatcagaa tgattttttt
     1561 catgaccccg ccttaaacag attgtagaag tgattcgaac atggtgtgcg cggcggagat
     1621 ggcttgcgcc gccgcctggt aagcctggct gtaattggtg aggatgacgg cctgctggtc
     1681 agtattgacg ccagctaccg tttgcagatt gttggtggtg gtggtcacct gcgcggcggt
     1741 ggcggtggcg agctgctgcg ccgcctgcgc attggcgccg agcccggtgg agaggccgat
     1801 gaccgcctgc tccatcgtcc cagcagaggt ggtgccgggc gtggtccaga gtgtcgccat
     1861 gcgctgtgca ttgctgccgc tggaagcgcc acctggtgtg agggtgagca cgtcgcccgc
     1921 gacgggcgag cccgatatgg gcaattgcca atattgcccc gacgccgcgc ccggcggata
     1981 ggcgatggcg atatcgccgt cattgccgct taagctaccg ctggcgatga ccgtgccggg
     2041 gctggcggtg gtggagatgg tgtagctggt ggaagaggtg aaattcacct gcagattttg
     2101 cccgtaatag ctggcgggaa tcacggccgc accggaggcg ggggcgctgg tgacgctgtc
     2161 tgttccagtg gtgatggtgc cggcgttcgt gtcagaaatg gaaccatcgc tttgcagtgt
     2221 gccggcagtg ccgacataag ggtccgccgt ggcgatgtca ttcgtgcccg tggcggccac
     2281 cttcaggccg gtcgcagcgt taggcgcggg attaacggtg aaactgtccc cggccgcggc
     2341 ggtgccggtg atggcgagcg cgatgccggc gaagctcgac ggcgtgccgg tgacgctgta
     2401 gctctgcccg ttcgcctggt ccttggcgct ccagctcgtg ccgttatagc tcagggtgaa
     2461 ggggccgcca tccaccggca gggcggcggc attggcgatt tgcgcggtga tggtggcact
     2521 gcctgtgttg ctgctggcag gcgtgacgct gggcgccggc acggagaaca aggcctgacc
     2581 ctgggtgccg ctgggggtga ggccttcggc ctgtgcggtg ttcacctgag ttgcgaaaat
     2641 cgtggccacg gaactcagac tttgcaaagc ggacgcaccg gactgcatgg tgccgatggc
     2701 tccgccgatg gcgccgtcgt cattactggc tgtgacgggg acattgctgt tgccggcggt
     2761 cacgccaggc ggattgttgc ttgtgacgct gagcgcctgc gcgccgctct ggtccagcag
     2821 caccgtgccg cccgaggtga cgatgacgga gccgttgctc tgggtgatga cgctgacggg
     2881 cagaagctgc gatagggaat tgagcgaggc ctgctgctgg tcaagcaggc tgggctggct
     2941 gggcgtcgtc gccagggtct tgttgatgga ggcgagctgg ttgagaaggt tgttggccga
     3001 gctgacactt tgcgtgagcg tcgtgctggc accagcgatg gaatcgttga tgacgctgga
     3061 cgcggtctgg aaggagctga ccacggtctg cgcatcggcc agcacggtct ggcgctgggc
     3121 ggcactcgtg ggattggatg ccagcgtgct gacatcctcg aagaactggt tgatggcggt
     3181 ctggatgtcg ccattattgg tgagcgcgtt ggagatggcg gtgagcgagg tggattgcgc
     3241 cgaggccgcc gcgttggcgg tgttggcgtt tcgcaattgc gccgcggcga agctggaagc
     3301 cgcgcgcaca atctgcgccg gctgcacgcc atcgcccggc tggttgggcg cgcccacctg
     3361 cgtggtggcg ttcacactct ccgccacata gccgctggtg gtggcgttgg cgagattgtt
     3421 cgagaccgtg gaaattccag cctcgaacaa ttccaggccg gaaagcgctg tgttgatggc
     3481 gttggcaatg ccgctcatgg tccacctgtt ttactggctg tgttgctact ttgtgaggat
     3541 gcgccgccga cggcctggag cacctgcgcc atcagcggcg agtcggcgat attgacgatt
     3601 ttcgccgcat aattctggtc cgtggcgtag ccaccatcct gcagggcctg ggcgaagccg
     3661 gcaacgctgc tctggccggc ggcattctgg tagccggact ggatgagacc gacataatcg
     3721 ctgaccgcgt ccgatggcgt ctcatagtcg cggaaattcg ccgtctgtgg catcagcacg
     3781 ccatccacca tttcatgggt ggcgcgggcg ctcccggcct gcccgtccgc cgccttgatg
     3841 ccgaacaaat tattgcccgg cgcggaggcg ccccagcctg tttccagcgc cgtctgcgcc
     3901 agcacggcga cgggcggcac gccgagcgtc tgcgccgccg cggtgatttg cggccagatg
     3961 gtcttggcga aggatttggc ctgcgccacg agatctcccg agacgcctgc cgcctgcggc
     4021 aaggcggcgg caatctccac cgcagccgag atgggtgcgg gcagcaggcg agccagcggc
     4081 gtggcgatat ccggcgccgc agcttcgggc acctggctcg cggcgccgcc aacctgccgc
     4141 atggcggcag cgatgagccc ggtatcatat ttgccgaaat cattctgcgc gagattccac
     4201 aggaacaggc tctggaaatc gccaccaccg gtgccgagcg tgtccgcgct cagcccgttc
     4261 gcgttcatcg cctgcagcat ctggtcccat aacatgccgg ccatatgctg caccgtggcg
     4321 gcaagaggcg gcttctccgc cggtgtaccc tgggctgtca cgggcgcgat catcatatca
     4381 ccttgatcgt gccgttgatg gcgccggcct gtttcagcgc ctcgataatg gcgatgaggt
     4441 cggagggcgt tgcgcccacc gcgttcaatg ccgcggccac gtcctgcaag gttgccgctt
     4501 tcaggacctt tcagcaatgg ccagacggtg ggggtacaga atacggtggt cagcgccagg
     4561 cagggcaagt cgcaggtcat agcgctaccg aaagcggcaa ccttgcagga c
//
LOCUS       DASQCV010000580         1800 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3110321, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000580 DASQCV010000000
VERSION     DASQCV010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3110321"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(36..1037)
                     /locus_tag="VEQ16_08865"
     CDS             complement(36..1037)
                     /locus_tag="VEQ16_08865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011390764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HYP63986.1"
                     /translation="MMYDDAFLSRLTAGLAGVLPEWGLNAGTRLLLLTISENATYLAE
                     APDGRKLIFRVHRPDYHSSAEISAELAWIAALGEADVVITPASLPALDGRHLVTFQDG
                     ETTRHVVAFSFMAGREPDAESDLARWYGHLGEITARLHDHARGWARPEGFVRKVWNFE
                     TIIGRRAYWGDWRLAPGLDAAGSETLERTAELLQHQTAEYGHDPDRFGLVHCDMRAAN
                     LLVEGERLAVIDFDDCGFSWYAYDFAAAVSFMEHEPFIPALQAAWVAGYRRVAPFSAG
                     EEAALAMFVMLRRIQLTAWIGSHGETPTAQAMGEAYVRGTVALAAAYLRQHALEPAL"
     gene            1165..>1800
                     /locus_tag="VEQ16_08870"
     CDS             1165..>1800
                     /locus_tag="VEQ16_08870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HYP63987.1"
                     /translation="MHSSTRPFLIDRYIIRQLALALVLVTLGLVALIWLTQSLRFIQI
                     IVDHGLSPFVFVKLTGLLVPSFIATILPITCFIVVLFIYTRMSGDRELTIMRNIGMSD
                     ARLARPAIGVALGAMILCYILNLGVVPAAFGAFRNYQYEIRNQIAAFLLQPGVFTEVS
                     GEVTVYVQTKAADSSLHFILIEDNRDPTAPATILARTGQLAVDAHGPVLLLQ"
BASE COUNT          324 a          654 c          495 g          327 t
ORIGIN      
        1 gaaccggttg agggccagaa tctgccgcgc cgcgctcaca gcgccggctc cagcgcgtgc
       61 tggcgcagat aggcagccgc cagcgccacc gtgccgcgca cataagcctc gcccatcgcc
      121 tgcgccgtcg gtgtctcgcc atggctgccg atccatgcgg tcagttgtat ccgccgcagc
      181 atcacgaaca tcgccaaggc cgcctcttcc ccggcggaga agggtgccac gcgcctgtac
      241 cccgccaccc aggccgcctg cagcgcgggg atgaagggct catgctccat gaagctgaca
      301 gcggcggcga aatcataggc ataccaggag aagccgcaat catcgaaatc gatcaccgcc
      361 agccgctccc cctccaccag cagattggcg gcgcgcatat cgcaatgcac cagcccgaat
      421 cggtccggat catggccata ttcagccgtc tggtgctgca acagctccgc ggtgcgctcc
      481 aaagtctcgc tccccgccgc atccagcccc ggtgccagac gccaatcgcc ccaataagcg
      541 cggcggccaa tgatggtctc gaaattccag accttgcgta cgaacccttc cggccgcgcc
      601 cagccccgcg catggtcatg cagccgcgct gtgatctcgc cgagatgccc gtaccaacgc
      661 gcaaggtcgc tttccgcatc cggctcgcgc cctgccatga agctgaacgc caccacatgg
      721 cgcgttgtct ccccgtcctg gaatgtcacc agatgccgcc catccagagc tggcaaggac
      781 gcgggggtga tcaccacatc cgcctcgccc aaggctgcga tccaggccaa ttccgcgctg
      841 atttccgcgc tactgtgata atccggccgg tgcacccgga agatcagctt ccgcccatcc
      901 ggcgcctcgg ccagatatgt ggcattctcc gaaatcgtca gcagaagcag cctggtaccg
      961 gcattaagcc cccattccgg cagcaccccg gccagcccgg cggtgagccg gctcagaaac
     1021 gcgtcgtcat acatcatccg gggcacctcc atagcagcga tgttggaagt acaacatgaa
     1081 cgatgtggta cttgcaacgg caaaattccg ccaatatccc gtgctcttgc cttccacacc
     1141 gcgccccgcc agaaccttcc cgcaatgcac tccagcaccc ggcctttcct catcgaccgc
     1201 tacatcatcc gccagctggc cctggccctg gtgctggtga ccctgggcct ggtggcgctc
     1261 atctggctca cccagtcgct gcggttcatt cagatcatcg ttgatcatgg gctttcgccc
     1321 ttcgttttcg tgaagctcac cgggctgctg gtgccgagct tcatcgccac catcctgccc
     1381 attacctgct tcatcgtggt gctgttcatc tacacgcgca tgagcggcga ccgcgagctg
     1441 accatcatgc gcaatatcgg catgtcggac gcccggctgg cccggccggc catcggcgtg
     1501 gcactgggcg ctatgattct gtgttacata ttgaatctgg gcgtggtacc ggcagcgttc
     1561 ggcgcgttcc gcaactacca atacgagatc cgcaaccaga ttgcggcctt cctgctgcag
     1621 cctggcgtgt tcaccgaggt ctctggcgaa gtcaccgtct atgtgcagac caaggcggcc
     1681 gatagcagcc tgcatttcat cctcatcgag gataatcgtg accccaccgc ccccgccacc
     1741 atcctggcgc gcaccggtca gctcgcggtg gacgcgcatg gcccggtgct gctgcttcag
//
LOCUS       DASQCV010000581         1707 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_788092, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000581 DASQCV010000000
VERSION     DASQCV010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_788092"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..1260)
                     /locus_tag="VEQ16_08875"
     CDS             complement(52..1260)
                     /locus_tag="VEQ16_08875"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HYP63988.1"
                     /translation="MTAPLHGLRIIEMAGIGPGPFAGMMLADHGAEVIRVERADAPWR
                     FNNVLHRSRRSITVNLKRPEGVAIVAKLCCQADGLIEGLRPGVMERLGLGPDKLRAAN
                     PRLVYGRVTGWGQDGPLAQTAGHDLSYIALSGALDLMGRAGERPPVPLNLIGDFGGGG
                     MLLAFGMLSAIFAARNTGNGQVVDAAMTEGAALLMSMFYGEGQTPEWPGQRGTNMLGG
                     AAPFYDIYETADGGFIALSCIEPKFYAEMLQKTGLTDDPDFQDQMNRAFWPAAKVKLT
                     TLFKNRTRDEWCAVLEGTDACFAPVLSIKEAPAHPHNQARGSFVEAFGRVQPAPAPRY
                     STSHTIRPVLPAAGADTDAVLTEAGYGPQEIAALRKAGVVSGPAGALDARAAGASAAG
                     SVSDDEGMPQ"
     gene            complement(1257..>1707)
                     /locus_tag="VEQ16_08880"
     CDS             complement(1257..>1707)
                     /locus_tag="VEQ16_08880"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP63989.1"
                     /translation="NVGQANYSAAKAGVAALTMIAARELERYGVRVNAIAPIAATRLT
                     SSVMSDTAKERFDPANVSPLVVYLLSQEAREVNGRIFLVGADGVVTVDPPRPIAGGRT
                     EDGQWTPQALAAVVPGIVAQLPPSQTSLDAAKFMADAPITATAGSEG"
BASE COUNT          357 a          581 c          453 g          316 t
ORIGIN      
        1 accgccgcgt ctggttacgc agctcgatct gctccgacga aaaatcgaaa ttcattgcgg
       61 cataccttcg tcatctgaga ctgaccccgc tgcgctggcg cctgcagccc ttgcatcgag
      121 cgcgccagcc ggcccactca caactccggc tttccgcagg gccgcgattt cctgcgggcc
      181 ataacccgcc tctgtcagca cagcgtccgt gtccgctcct gccgcgggca aaaccgggcg
      241 gatggtatga cttgtggaat atctaggcgc aggggcaggc tgaacgcggc caaaggcttc
      301 aacaaaactg ccccgcgctt gattgtgcgg gtgggccggc gcctccttga tcgaaagaac
      361 aggggcgaaa caggcatcgg tgccttccaa cacggcgcac cattcgtccc gcgtgcggtt
      421 tttgaacaaa gtcgtcagct tcaccttagc cgccggccaa aatgcgcgat tcatctgatc
      481 ttggaaatcc ggatcgtccg tgagacccgt cttttgcagc atttcggcat aaaattttgg
      541 ctctatgcag ctcagagcta taaagccgcc atcggcagtt tcataaatat cgtagaatgg
      601 cgcggcgccg ccaagcatat tggtgccgcg ctgaccgggc cattccggcg tttggccctc
      661 accatagaac atgctcatga gcaacgccgc gccctcagtc atggcagcat cgacgacttg
      721 tccattccca gtgttgcgcg ctgcgaaaat cgcgctgagc ataccaaagg cgagcaacat
      781 gccgccaccg ccgaaatccc ctatgaggtt gagtggcaca gggggccttt ctccagcccg
      841 ccccattaaa tccaaagcac cacttagagc gatataactc aggtcatgcc cagcggtctg
      901 cgccaatggc ccgtcctgcc cccaccctgt cacccgacca taaaccagcc gcgggttggc
      961 ggcccgcaac ttgtctgggc ctaaaccgag acgttccatc acgcccggcc gcaacccctc
     1021 aattaaccca tcggcctggc aacaaagttt ggcgacaatc gcgaccccct caggccgctt
     1081 cagattcacg gtgatggaac gccgcgaccg atgcagcacg ttattgaaac gccacggcgc
     1141 atctgcccgc tccacgcgga tcacctccgc accatgatcc gcgagcatca tgccggcaaa
     1201 tgggcctggc ccaatgccgg ccatctcaat gatgcgcagc ccatgtaacg gcgcggtcac
     1261 ccctctgatc cggctgttgc agtgatggga gcatccgcca tgaacttggc tgcatccaag
     1321 gacgtctgcg atggcggcaa ttgagcaacg atacctggaa cgaccgcagc caacgcctgc
     1381 ggcgtccact gcccgtcctc agtgcggcct cccgcgattg gacgcggcgg atcaacggta
     1441 acaacaccat ccgcgcccac aagaaatatc cggccattga cctccctcgc ctcctggctg
     1501 agcagataaa ccaccaatgg cgacacgttc gccggatcaa agcgttcttt ggccgtgtcg
     1561 ctcatcacag agctcgtcag acgcgtagcc gcaatcgggg caatggcatt gacgcgcacg
     1621 ccatagcgct caagttcgcg cgccgcaatc atggtcagcg ctgccacgcc agccttggcc
     1681 gcgctataat tggcctgccc gacattg
//
LOCUS       DASQCV010000582         2618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2613098, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000582 DASQCV010000000
VERSION     DASQCV010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2618
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2613098"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..395)
                     /locus_tag="VEQ16_08885"
     CDS             complement(<1..395)
                     /locus_tag="VEQ16_08885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYP63990.1"
                     /translation="MSKTAIGKTIRRLRMEQGHTQQGFAQKLGISTSYLNLVEHDQRN
                     VTASLLFKLTDLLKVDLAALSGTQEREFEVQLREAFSDPALAGETVPDADIKTLAAAP
                     GAARAVLALHKALAGAREESSGITLPSGR"
     gene            581..793
                     /locus_tag="VEQ16_08890"
     CDS             581..793
                     /locus_tag="VEQ16_08890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63991.1"
                     /translation="MRQFRISNRTPDGFAGAPAARQRDVVADAYSTIAILAKASRLKS
                     QAPAEDYSNAYDDGLVHDHGWARSPR"
     gene            complement(847..1209)
                     /locus_tag="VEQ16_08895"
     CDS             complement(847..1209)
                     /locus_tag="VEQ16_08895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63992.1"
                     /translation="MAKTVARKHTCLRNEFSGGDASDTFKPQVEWNWPLSGAVSVPVT
                     PSGITINLGGSGNPPLEQDMLEHVGSYGRQIGWLCDALEVILEKLDRFALTEADEKAL
                     KTFELMATSTRFRKSLQK"
     gene            1270..1935
                     /gene="aat"
                     /locus_tag="VEQ16_08900"
     CDS             1270..1935
                     /gene="aat"
                     /locus_tag="VEQ16_08900"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HYP63993.1"
                     /translation="MSARPFQLTPDLLLRAYRLGLFPMAESRGAKTLHWLDPEARGVL
                     PLYGFHVPRSLMKVLRNGHFTVTADEDFAATIANCAAARTERPETWINPEIERLFVEL
                     HRLGFAHSVETWEDGRLVGGLYGAALGGAFFGESMFSTATDASKVALVHLVARLRLSG
                     FTLLDTQFITSHLARFGAAEIPRNAYHERLAAAVDVPARFIASPDPALLLCEIEAIRR
                     ESP"
     gene            1932..2510
                     /locus_tag="VEQ16_08905"
     CDS             1932..2510
                     /locus_tag="VEQ16_08905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63994.1"
                     /translation="MRILAAFAFAALPGGAFAAPAFLPTQDVAVTYELNVPNRTPENY
                     LLRYSAAGQMARVDPQAGGYFLLGNLPAGQAELIIPGMHAVVQAPDFSALTAQIYNAD
                     GAQFTPLGPGHYAGLDCEKYLVLDKNGTGTACLTPSGVVLHFAGHDARGSAEVTALSV
                     TYAPQPADVFATPPGLTPLDLPPEAVQALLNQ"
BASE COUNT          467 a          777 c          823 g          551 t
ORIGIN      
        1 ttgcgccccg aggggagagt gatgccggag gattcctcgc gcgccccggc cagggccttg
       61 tgcagggcca gcacggcgcg ggccgcacct ggggcggcgg cgagggtttt gatgtcggca
      121 tccggcaccg tctcgccggc caaagcgggg tctgagaaag cttcgcggag ctgaacctcg
      181 aattcgcgct cctgcgtgcc ggacagggcg gcgagatcga ccttcaggag atcggtgagc
      241 ttgaatagca gcgaggccgt gacattgcgc tgatcatgct cgacgagatt gaggtaggac
      301 gttgatatgc cgagcttctg ggcaaaacct tgctgggtat ggccctgttc catgcgcagg
      361 cggcggattg tcttgccgat ggcagttttt gacatgtttt acaaatagca aaaatttacg
      421 gtaaagtcac gcacgtattt ccaggttttg ccaccagatt ccgctgtact tcgcggggta
      481 ttgtaaatag ttttcacaat acaccgagcg ttcttcgcgg cattcctttc ccatcccagc
      541 cgcgggggac aagatccgcc gtgtgtaaaa ggagattacc atgcgtcagt tcagaatttc
      601 gaaccgcact cccgatggct ttgctggcgc ccccgccgcg cgccagcgtg acgtggtggc
      661 tgacgcctat tccaccattg ccatcctcgc caaggccagc cggctgaaga gccaggcgcc
      721 ggccgaggat tacagcaacg cttatgatga cggcctggtc catgaccatg gctgggcccg
      781 ctcgccccgc tgatcaagaa cgaataataa tcagctttcc ttgccccggg cagatttgcc
      841 cggggtttat ttttgcaggc ttttgcggaa gcgggtgctg gtggccataa gctcgaatgt
      901 tttcagggcc ttctcgtcag cttcggtcaa agcgaagcga tcgagctttt ccagaatcac
      961 ctccagcgcg tcgcacagcc agccaatctg gcgcccatag ctgccgacat gctcgagcat
     1021 gtcctgttcc agcggcggat tgccggagcc gccgagattg atggtgatgc ccgacggggt
     1081 gaccggcacc gagacggcac cggagagagg ccaattccac tccacttgcg gcttgaacgt
     1141 atccgacgcg tcgcctccag aaaattcgtt gcggagacaa gtgtgcttgc gtgcaacagt
     1201 ctttgccaag tgaaatcatg caggtggttt cacttggcaa agcgcggact tacatgcgag
     1261 cctatgatca tgtcagcacg gcctttccag cttacgccgg atttgctgct ccgcgcttac
     1321 cggctggggt tgttccccat ggcggaatca cgcggcgcca agaccttgca ctggctggac
     1381 cccgaggcac ggggcgtgtt gccgctctat gggtttcatg tgccgcgcag cctgatgaag
     1441 gtgctgcgca atgggcactt taccgtgacg gccgacgagg atttcgccgc gaccatcgcc
     1501 aattgcgctg cggcgcggac ggagcggccg gaaacctgga tcaatccgga aatcgagcgc
     1561 ctgttcgtgg agctgcaccg gctcggcttc gcccatagcg tggaaacctg ggaggatggg
     1621 cggctggtcg gcgggctgta tggcgcggcg ctcggcgggg cgtttttcgg cgagagcatg
     1681 ttctccaccg ccacagatgc ctccaaagtg gcgttggtgc atctggtggc gcggttgcgg
     1741 ctctcgggct tcactttgct cgatacgcaa ttcattacca gccacctcgc gcgcttcggc
     1801 gcggctgaga ttccgcgcaa cgcctatcat gaaagactgg cggcggctgt ggatgtgccg
     1861 gcgcgcttca tcgccagccc tgatcctgcc ttattgctgt gcgagataga ggcgataaga
     1921 cgggaatcgc catgagaatt ctagctgcct ttgcctttgc cgccctgcca gggggcgcct
     1981 ttgccgcgcc ggcgtttctg cccacgcagg acgtagccgt gacctatgag ctgaacgtgc
     2041 ccaaccgaac gccggagaac tacctgctgc gttacagcgc ggcggggcaa atggcgcggg
     2101 ttgaccctca agccggcggt tatttcctgc tgggcaatct gccggccggc caggcggagc
     2161 tcatcattcc cggtatgcat gccgtggtcc aggcgccgga tttctctgcc ctgaccgcgc
     2221 agatctataa tgccgacggc gcccagttca ccccgctcgg gcccggacat tatgcggggc
     2281 tcgattgtga gaaatatctg gtgctggaca aaaacggcac cggcacagcc tgcctcaccc
     2341 cttccggcgt ggtgctgcat tttgccgggc atgatgcgcg cgggtcggcg gaggtcaccg
     2401 cgctctccgt gacctatgcg ccgcagccgg cggatgtatt tgcaacgccg ccggggttga
     2461 cgcctttgga tttgccgccg gaggcggtgc aggctttgtt gaatcagtaa agtttgcaaa
     2521 cagtctctta ggcaaactct atcagcagat cctttgcgtc gatctgttca ccggggcgaa
     2581 ccaggatggt tttcaccacg ccatcacggg gcgcggag
//
LOCUS       DASQCV010000583         2008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1785701, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000583 DASQCV010000000
VERSION     DASQCV010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1785701"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..726)
                     /locus_tag="VEQ16_08910"
     CDS             complement(<1..726)
                     /locus_tag="VEQ16_08910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP63995.1"
                     /translation="MLAEFALWWLTQMRALARPLLPAAPARPDALIVAIDGPAVGDEV
                     SGILLLRRDGKEIGLHRLEPGRPRPAAAPPSLATGLRLPQGAVLSRELVLPLAAARDL
                     RTVINFELDRLTPFSADELYWGVSGITQDRARARLSLTLSIALRAQVEALRAALARCN
                     LVPSFIEAGAGHIELAGGVKRPDWHWRTGVAILCSVLALACIVTPFLRQQMALDAADA
                     AVADATPAARTAEALRQQLATAAQ"
     gene            complement(815..1417)
                     /locus_tag="VEQ16_08915"
     CDS             complement(815..1417)
                     /locus_tag="VEQ16_08915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HYP63996.1"
                     /translation="MKQQDRREDGYTLLEMLVALVVFGLVMAGIAQSYRFGLTAWSAG
                     EHNTTEPENIAALDAALTRIIEAAQPGSMIGTPNQLALTTTLPPGAGLPGLADAAILL
                     QPDGTLILRYAPHAPGVPLTPPPRPRIEPLLHGVTGFSTAYLVPAQNAPAAWSSKWSG
                     EKLPLLVRLHVRLADGRDWPDLIAAPADQGNPDSVGQNSN"
     gene            complement(1414..1770)
                     /locus_tag="VEQ16_08920"
     CDS             complement(1414..1770)
                     /locus_tag="VEQ16_08920"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HYP63997.1"
                     /translation="MRGDTGFTLLEVMAAFVIMALAAVVLYQAGVGGVAQGLTAARMQ
                     EAVVRAQSRLASVGTLTQLQPLQAGGDDGDGFSWQLAIVPEQSEDGLTLYDVRATERF
                     GTRPVVLTTKRLGSSP"
     gene            complement(1760..>2008)
                     /locus_tag="VEQ16_08925"
     CDS             complement(1760..>2008)
                     /locus_tag="VEQ16_08925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="GspH/FimT family protein"
                     /protein_id="HYP63998.1"
                     /translation="AREIAAAMRAARGEAIDQGHPVRFTLPRLPASVTATIQAPPVGI
                     VFAPDGSASGGRVVLDGPGQELAVSADWLTGQVQIDAR"
BASE COUNT          346 a          679 c          659 g          324 t
ORIGIN      
        1 ctgcgcggcg gtggcaagct gctggcgcag cgcctccgcc gtgcgcgccg ccggggtagc
       61 atcggcgacc gccgcatccg ccgcatccag agccatctgc tggcgcaaga aaggggtcac
      121 gatacaggct agcgccagca cgctgcataa gatcgcaaca ccggtgcgcc aatgccagtc
      181 cggccgcttc acgccgcccg ccaactcgat gtgtcccgcg ccagcctcga tgaagctcgg
      241 cacaagatta catctggcca gcgccgcgcg cagcgcctcc acctgggcgc gcagcgcgat
      301 ggagagggtt aggctgagcc ttgcccgcgc ccggtcctgg gtgatgccgc tcacccccca
      361 ataaagctca tcggcggaga acggggtgag gcggtccagc tcgaaattga tgaccgtgcg
      421 tagatcgcgt gccgccgcca gaggcagcac cagctcgcgg cttagcaccg cgccctgtgg
      481 cagacgtagt ccggtggcga ggctgggtgg cgcggcggcg gggcgagggc ggcccggttc
      541 cagcctgtgc aaccctatct ccttgccgtc gcggcgcagc agcaatatgc cgcttacctc
      601 atcccccaca gctggcccgt ctatggcaac aatcagcgca tcgggccgcg ccggtgcagc
      661 tggcagtaac ggccgcgcca gggcgcgcat ctgggtcagc caccagaggg cgaattcggc
      721 gagcatcagc ctgcaccctt catggcatgt gacagttcca tggcaggggc ctgattagcg
      781 ggttccgccg gggcggaaca atgaagcttt cgcgtcaatt gctgttctgc cctacagaat
      841 ctgggtttcc ctgatcggcc ggcgcggcga tgaggtccgg ccagtcgcgt ccatctgcga
      901 gcctgacatg gaggcgcacc agaagcggca atttctcgcc tgaccatttg ctggaccaag
      961 ccgcaggcgc gttttgcgcc ggtacgagat aggcggtaga aaatcccgtc acgccatgca
     1021 gaagaggctc gatgcggggt ctgggcggag gcgtaagtgg cacacccggc gcgtgcgggg
     1081 cataacgcag aatgagcgtg ccgtccggct gcagcagaat ggcggcatcg gctaggcctg
     1141 gcagcccggc gccgggcggc agggtggtgg taagggcgag ctggttaggt gtgccgatca
     1201 tactgcccgg ctgggcggct tcgatgatcc gcgtgagcgc cgcatccagc gctgcgatgt
     1261 tttccggctc cgtggtattg tgttccccgg ccgaccaggc ggtgaggccg aaccggtagc
     1321 tctgcgcaat gccggccatt accagcccga acaccaccag tgccaccagc atctcgagta
     1381 gtgtatagcc atcctcgcgc cggtcctgtt gtttcatggg ctggacccca gccgctttgt
     1441 ggtgagcaca accggccgcg tgccgaaacg ttccgtggca cgcacatcat aaagagtgag
     1501 cccgtcctcc gattgttctg gcacgatggc gagctgccag gaaaacccgt ctccatcatc
     1561 tccaccggcc tgcagaggct gcagctgagt taatgtgcca acggacgcga ggcgcgattg
     1621 tgcccgcacc actgcctctt gcatgcgtgc cgcggtgagt ccctgcgcca cgccacccac
     1681 cccggcctgg tacaaaacca ctgctgccag cgccatgatg acgaacgccg ccatcacttc
     1741 cagcagggtg aaacccgtat caccgcgcat cgatctgcac ctggccggtc aaccagtcgg
     1801 cggagacggc gagttcttgc cccggaccat ccagcaccac ccgtccgcca ctggcgctgc
     1861 catcgggcgc gaaaacaatg ccgaccggcg gagcctggat ggtggccgtg acgctcgcgg
     1921 gcaggcgcgg cagggtgaag cgcacaggat gaccctggtc gatggcttcc ccgcgcgccg
     1981 cgcgcatcgc cgccgctatc tcgcgcgc
//
LOCUS       DASQCV010000584         1686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2448347, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000584 DASQCV010000000
VERSION     DASQCV010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2448347"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(49..372)
                     /locus_tag="VEQ16_08930"
     CDS             complement(49..372)
                     /locus_tag="VEQ16_08930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HYP63999.1"
                     /translation="MAHVTIRINGYAYTVGCEDGQEEHLTRMAAEIEQRISSIKAIGG
                     QSGEARLLMLAALLLADEVHDLRTNSAAKAAPAEEKPESGERRARLRRVAARAEEIAA
                     DLLDS"
     gene            complement(375..647)
                     /locus_tag="VEQ16_08935"
     CDS             complement(375..647)
                     /locus_tag="VEQ16_08935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64000.1"
                     /translation="MSESESEDEILDRIEAALRKIAGLSNAAPRPEAGEAPDRAALVE
                     KLDGIIARLREGLGAPVRENSSAHLREDLNAPARDELENPRSEPGE"
     gene            724..1125
                     /locus_tag="VEQ16_08940"
     CDS             724..1125
                     /locus_tag="VEQ16_08940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64001.1"
                     /translation="MLPPAIIVHGLPDIRAALAPGKAVTLLSAPGAALYAGVGWWAAL
                     LAAGNVTGPSFLDCADAPGRAWEGLALGLPGIILRPCPAWAQVAEYAATHSALLLDAA
                     PPALDLAAPGASRRLNDWLTGNYCGVPPAAP"
     gene            1238..>1686
                     /locus_tag="VEQ16_08945"
     CDS             1238..>1686
                     /locus_tag="VEQ16_08945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase"
                     /protein_id="HYP64002.1"
                     /translation="MAISKAVKTILSHYESDNPGTKTNLARILMAGKLRGTGKLVILP
                     VDQGFEHGPARSFAPNPAAYDPHYHYQLAIDAGLSAYAAPLGMLEAGASTFAGQIPTI
                     LKVNSSNSLAVDKNQALTGSVNDALRLGCSAIGFTIYPGSEFAFDLM"
BASE COUNT          271 a          616 c          495 g          304 t
ORIGIN      
        1 tcccgcttct ggcccttggc tatttctccg ccgtccggcg gtaaagcctc agctatccag
       61 cagatccgcg gcgatttcct cggcgcgcgc ggcaacgcgg cgcaaccggg cgcggcgctc
      121 gccggactcg ggcttttcct ccgccggcgc cgccttcgca gcagaattgg tacgcagatc
      181 atgcacctcg tcagccagca acaaagccgc cagcatcagc aaccgcgcct cgccggactg
      241 gccgccaata gccttgatgg agctgatgcg ctgctcgatc tcggccgcca tgcgggtgag
      301 atgctcctcc tgcccgtcct cgcagcccac cgtgtaggcg tagccgttga tccgtatggt
      361 cacatgcgcc atggctattc tcctggctca gagcggggat tttccagctc gtcacgcgca
      421 ggcgcgttta ggtcttcacg cagatgcgcg cttgaatttt cacgcacggg cgcgcccaaa
      481 ccttcacgca gccgcgcaat gatgccatcc agtttttcca ccagcgcggc gcggtccggc
      541 gcctcgcccg cttccggccg gggggccgca tttgagagtc ccgcgatctt gcgcagggcc
      601 gcctcaatgc ggtcgaggat ctcgtcttct gactccgact cggacataca gcctattcaa
      661 cccgacgccg ccgtgtaagg tcaaggcaag tcctggcaaa ctgtggataa actggaaaaa
      721 ctcatgctcc cgcctgccat aatcgtgcat ggcctgcccg acatcagagc ggcgctggcg
      781 ccggggaaag ccgtgacgct gctctctgcc cccggtgctg cgctctatgc cggcgtcggc
      841 tggtgggcgg ccttgctcgc ggcgggcaac gtcaccggcc cgtccttcct cgattgcgcc
      901 gatgcccccg gccgcgcctg ggaagggctg gcgctgggcc tgccgggcat cattctgcgc
      961 ccctgccccg cctgggcgca ggtggcggaa tatgccgcga cgcacagcgc cttgctgctg
     1021 gacgcagccc ccccggcgct ggatcttgcc gcgcccggcg cttcgcggcg gcttaacgat
     1081 tggcttacag gaaattattg cggcgtcccg cccgccgcac catgattccg ccttaatttc
     1141 cctctcctag agcgccgtgg cgatggccct cgcggatgac atccggcatc ccgtgggcta
     1201 ggaagcgcca ggtttttgga aaggtgggaa gaaaaagatg gcgatcagca aagcagtgaa
     1261 gacgatcctg tcgcattatg agagcgacaa cccgggcacc aagaccaacc tggcgcgtat
     1321 cctcatggca ggcaagctgc gcggcaccgg caagctggtc atcctccccg tcgaccaggg
     1381 tttcgagcac ggcccggccc gctccttcgc ccccaacccc gccgcctacg acccgcacta
     1441 ccactaccag ctggcgatcg atgccggcct ctccgcctac gccgccccgc tcggcatgct
     1501 ggaagccggc gcctccacct tcgcgggcca aatcccgacc atcctcaagg tcaactcctc
     1561 caactccctc gccgtcgaca agaaccaggc cctcaccggc tcggtgaatg acgcgctgcg
     1621 cctgggctgc tcggccatcg gcttcaccat ctatccgggc tcggaattcg ccttcgacct
     1681 gatgga
//
LOCUS       DASQCV010000585         2681 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1620291, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000585 DASQCV010000000
VERSION     DASQCV010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2681
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1620291"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1532)
                     /locus_tag="VEQ16_08950"
     CDS             complement(<1..1532)
                     /locus_tag="VEQ16_08950"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HYP64003.1"
                     /translation="MSEFDEIYDFIVVGSGAGSMCAGLVMRKAGKSVLIIEKTKLVGG
                     TTAKSGGIMWIPNNVFMKQEGIPDTPEQALTYLENVSGQSENAPGSTRERRAAYVEYA
                     PRMLDFLMQNGLKFERPKYWPDYYDDRPGGSEAGRTVSPQLFNANELGEWKDKLRPGF
                     NRFAASLEETMKLKTYKQSFSGKMLVLKVGIKTTLAKLMGKTILSAGAALQGQMLQAA
                     LKAGVKFSLGTGVQELIVEDQAVTGVLAQKDGKPWRVGARLGVLVNAGGFAQNQAMRD
                     QYQPGTNTAWSNATEGDTGEMIREMMRHGAAIAQMEEMVGYQTTMSPGVENDYIRPPG
                     QTMTASPHAILVDQSGVRYQNEGGSYMAYCKGMLERHKTVPAVPSWAIMDAQFVRNYM
                     LGNTMPGSKKPESWYTQNYLHEADSIEGLATKLNIDPATLKATVERFNGFVAANNDED
                     FKRGARAYDNWLGDPYHKPSPTLGTIAEAPFYAVPMVPGDVGTYGGVVTDVSGRVLRE
                     DG"
     gene            complement(1608..2279)
                     /locus_tag="VEQ16_08955"
     CDS             complement(1608..2279)
                     /locus_tag="VEQ16_08955"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP64004.1"
                     /translation="MRTKKAVPLTQPQAARKPRRAPGEIRERILAAAGEEFKTHGFSG
                     ATTLNIARRADVTEAQLFRYFTSKPILFREAVFEPLVRHFDVFDAKHHADVQDGLNLR
                     ENARLYIGELQQFIREHSKMLMSLVFAQTYAPFTTPGVGEIDSLQSYFARGAAMMTRR
                     TKDRARVEPKLMVRVSFAAVLAAILFKDWLFPAGLASEEEISDALVDFVIDGIAMSLD
                     PAPES"
     gene            2433..>2681
                     /locus_tag="VEQ16_08960"
     CDS             2433..>2681
                     /locus_tag="VEQ16_08960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64005.1"
                     /translation="MERSIFGQLAALEEAVQTLDATWRPEDPAYRADLYRQIMMNLSY
                     AYFAYFHADAEHPDWAPLWNPVYTCQPNPDDIYLYSPIR"
BASE COUNT          449 a          860 c          803 g          569 t
ORIGIN      
        1 ctgccatcct cgcgcaacac ccgcccgctc acatccgtca ccacgccgcc ataggtgccg
       61 acatcgcccg gtaccatcgg caccgcatag aagggcgcct cggcaatcgt gcccagcgtg
      121 ggcgagggtt tgtggtatgg gtcgcccagc caattgtcat aggcgcgcgc gccgcgcttg
      181 aaatcctcgt cgttattggc agcgacaaat ccgttgaagc gctccaccgt ggccttcagc
      241 gtggcggggt cgatgttcag cttcgtcgcc agcccctcga tgctgtccgc ttcatgcaga
      301 taattctgcg tgtaccagct ttccggcttt ttcgagcccg gcatcgtgtt gccgagcatg
      361 tagttgcgca cgaattgcgc atccatgatc gcccagctcg gcacggcggg cacggtctta
      421 tggcgctcaa gcatgccctt gcaataggcc atgtaggagc cgccctcgtt ctggtagcgc
      481 acgccgctct ggtcgacgag gatggcatgc ggcgaggccg tcatggtctg gcccggcgga
      541 cggatatagt cattctccac gccgggggac atggtggtct ggtaacccac catctcctcc
      601 atctgcgcga tggcggcgcc atggcgcatc atctcgcgaa tcatttcgcc tgtgtcgcct
      661 tcggtggcgt tggaccaggc ggtgtttgtg ccgggctggt attggtcgcg catggcctgg
      721 ttctgcgcga agccgccggc attcaccaat acgccgagcc gcgcgccgac gcgccatggc
      781 ttaccgtcct tctgcgccag cacgcccgtc accgcctggt cctcgacgat caactcctgc
      841 acgccggtac ccaggctgaa ttttacgccg gctttgaggg ccgcctgcag catctgcccc
      901 tgcagcgcag caccagcgga gaggatggtc ttgcccatca gcttcgccag tgtcgtcttg
      961 atgccgacct tcagtaccag catcttgccg gaaaaactct gcttgtatgt cttcagcttc
     1021 atcgtctctt ccagggacgc ggcaaatctg ttgaagcctg gccgcaactt gtccttccat
     1081 tcccccagct cattggcatt gaacaattgc ggcgagacgg tgcgcccggc ctcggagccg
     1141 cccggcctgt cgtcgtaata atccggccag tatttcgggc gctcaaattt gagcccgttc
     1201 tgcatcagga agtccagcat ccgtggcgca tattccacat aggcggcgcg ccgctcccgc
     1261 gtcgaccccg gtgcattttc cgattggccg gagacgtttt ccagataggt gagggcctgc
     1321 tccggcgtgt cgggaatccc ctcttgcttc atgaagacat tgttcgggat ccacatgatg
     1381 ccgccggatt tggccgtggt gccgccgacc agctttgtct tctcgatgat cagcacgctt
     1441 ttgccggcct tgcgcatcac cagcccggcg cacatggagc cggcgccgct tcccacaacg
     1501 atgaaatcgt aaatctcgtc gaattcgctc atctcaacgc ctctccccag gcagatagtt
     1561 gacgctatct tagtggggtt taccggggcg cggcaagcct ttgcgcgtca ggattccggc
     1621 gcggggtcga ggctcatcgc aatgccgtca atgacgaaat cgaccagcgc gtcgctgatc
     1681 tcctcctcgc tggcgagccc cgccggaaac agccagtcct tgaacagaat ggcggccagc
     1741 acggcggcga aggagacgcg caccatcagc ttgggctcca ccctggccct gtccttggtg
     1801 cggcgcgtca tcatggccgc gccgcgggcg aaatagcttt gcagggaatc aatctcgccc
     1861 acgcccggcg tggtgaaagg cgcgtaggtc tgggcgaaaa ccagcgacat cagcattttc
     1921 gaatgttcgc ggatgaattg ctgaagctcc ccgatataga gccgggcatt ctcgcgcaga
     1981 ttcaacccgt cctgcacgtc ggcatggtgc ttggcgtcga acacgtcgaa atgccgcacc
     2041 agcggctcga acaccgcctc gcggaacaag atcggcttgg aggtgaaata gcggaagagc
     2101 tgcgcctcgg tgacatctgc acgccgggcg atgttgaggg tcgtggcacc cgagaagccg
     2161 tgggttttga attcctcgcc ggccgctgcg aggatgcgct cgcggatttc gccgggtgcg
     2221 cggcggggtt tgcgcgctgc ctggggttgc gtgaggggta ccgctttttt cgtccgcaag
     2281 acgctcgtcc ttaccatcct gtccgttgtg tgactctagc ggcccggccg tctccgcgtc
     2341 cactaaggct tgccttcgcc gccgggttgt agatagtata cactacctaa gcctccgggt
     2401 caccaggcgg cggcaaagcg agggagggcg gtatggagcg ttccattttc ggccagctgg
     2461 cggctttgga ggaggcggtg cagacgttgg acgccacctg gcggccggag gaccccgctt
     2521 atcgcgcgga tctctacagg cagatcatga tgaatctgtc ctatgcctat ttcgcctatt
     2581 tccatgccga tgcggagcat cccgattggg cgcccttgtg gaacccggtc tatacctgcc
     2641 agcccaatcc ggatgatatc tatctctaca gccccatacg t
//
LOCUS       DASQCV010000586         4514 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1787044, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000586 DASQCV010000000
VERSION     DASQCV010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4514
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1787044"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..821
                     /locus_tag="VEQ16_08965"
     CDS             <1..821
                     /locus_tag="VEQ16_08965"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYP64006.1"
                     /translation="WLDNVRVQERRIPGHDDEAEVTIFIVNVKPGTKSPAILHLHGGG
                     FNAGSSRAGMCQIQELAVALDCVVVSVEYRLAPETPFPGALADNYAALRWMHENAAEI
                     GADPARIALLGESAGGGHAAMLALAARDRGEYPICFLSLIYPMLDDRTGSSRPVPDHI
                     GAFGWNAETNRFGWQCFLSQEPGTDSVPEDAVPARIKNLAGLPPTFIGTGALDLFVSE
                     NIIFAQRLIEAAVPTELITVPGAIHGFDTLAKDSAVARRFTAQKLAALRRTFAL"
     gene            complement(822..1355)
                     /locus_tag="VEQ16_08970"
     CDS             complement(822..1355)
                     /locus_tag="VEQ16_08970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64007.1"
                     /translation="MSDEKKEEAPRFEIFRGAEAKDYNEHEVMSLDDLTPAIAEGLAH
                     YMVGPDDAHGQVVELVYAAPGFSLSKVWFKSGYPLPLHSHTADCLYYILAGSLKMGTE
                     ALGPGDGFFVGKDVPYTYVPGPEGVEVLEFRNTDKLNIRFMARNKSFWERAGKKISAS
                     REAWKSEKPPSSLPRPE"
     gene            complement(1352..2590)
                     /locus_tag="VEQ16_08975"
     CDS             complement(1352..2590)
                     /locus_tag="VEQ16_08975"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP64008.1"
                     /translation="MLQAEDALVGAKNHQAAVRMAIIAFINTNIVLACIYGTFSVLLS
                     GVESRLGVGLKLATLGIPVVNLAIAICAPGVGVLASRASLRLLMLVGACLGVAGFLLL
                     AVTHSYLFYLLAYGLLIGPGMAVGVILPGTLVTRWFAVNRGKALGLVNTPIGLAIMPL
                     AINWMLQKHGLTASYLALAGLSVVSVVANLFILDKPPGYEPARAVAHGGVAGMGMAEL
                     VRAPRFWALLFAFIASSTSSVVLGAHMVPMARSWNLSATQGATMLATMSLVGIVGTLL
                     YGWVADRLGGALSIAFVVLVPAVLWLLLLAHPPFVEAVGLVGLIGLNGAGVVPVFSYA
                     LSEAFGRESFSRAYGVANLINLPFSVACVPVAAVIFMRTGSYNGAIIAVALFLCATGL
                     VALTARRRPPAVPVMVERFE"
     gene            complement(2940..4163)
                     /locus_tag="VEQ16_08980"
     CDS             complement(2940..4163)
                     /locus_tag="VEQ16_08980"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HYP64009.1"
                     /translation="MAASAPVTGEIKIPAHVPPELVRKLGITESPEFLVNPHKFMSAL
                     HQNCPPIVYSYGDMTPPAWNLMKYEDAYFVLRHPEIFTSEGTGPFPRDPDDYWKIIPL
                     EIEPPEHRKYRALVDPLVSPKAVLAMEIGIRKLANELIDNFIDKGSCEFAKEFGRPLP
                     VGVFLDIMALPREMMDEFVRWAMGLLHAQDRETNVRSMGEVTQYLNKVIAEKRGKLDG
                     GLVSAIVNGRPGGEEMSAKETFGFLFFVWIAGLDTVFATLNHIFLWLAENPDRRQEII
                     DTPDNINNIVEELLRVFTVTFSGRTLRQDYELRGVKMKKGDKVTSILPACNYDPEIFP
                     NPTEVNFHRPRKPVLTFAGGAHSCLGAHLARMEVKICIQEFLRRIPNFKIKPGVKIEY
                     WPGGVVGPKEVPLVW"
     gene            complement(4209..>4514)
                     /locus_tag="VEQ16_08985"
     CDS             complement(4209..>4514)
                     /locus_tag="VEQ16_08985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014199250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYP64010.1"
                     /translation="VQHNGARHEVDVPVGDSIMQGAVNNMIDGIVAECGGGLACATCH
                     CYVDEAWADKVGEPSETENEMLEAAASERKKTSRLSCQISVTDELNGIVVYLPETQF"
BASE COUNT          920 a         1588 c         1219 g          787 t
ORIGIN      
        1 cctggctgga taatgtgcgc gtgcaagagc gccgcatccc cggccatgac gatgaagccg
       61 aggtcacgat cttcatcgtt aacgtcaagc cgggcacgaa gagccccgcc atcctgcatc
      121 tgcacggcgg cggcttcaat gccggctcct cacgcgccgg catgtgccaa attcaggagt
      181 tggcggttgc actggattgc gtggtggtga gcgtggaata ccgtctcgcg ccggaaaccc
      241 ccttccccgg cgcgctggcg gacaactatg ccgccctgcg ctggatgcat gaaaacgccg
      301 cggagatcgg cgccgacccc gcgcgcatcg ccctgctggg ggaaagcgcc ggcggcggcc
      361 acgccgccat gctcgccctc gccgcgcgcg accgcggtga atatcccatc tgcttcctct
      421 ccctcatcta ccccatgctc gacgaccgca caggcagctc ccgccctgtg cccgatcata
      481 tcggcgcctt cggctggaat gcggaaacaa accgtttcgg ctggcaatgt tttctcagcc
      541 aggaacctgg caccgattcc gtgccggaag acgccgtacc ggcaaggatc aaaaacctcg
      601 ccggcctgcc gcccaccttc atcggcaccg gcgcgctcga tctgttcgtt tctgaaaata
      661 tcattttcgc gcagcgcctc atcgaggcag cggtgccaac ggaactcatc accgtccccg
      721 gcgctatcca tggcttcgac acgctggcaa aggacagcgc cgtcgcccgc cgcttcacgg
      781 cgcaaaaact cgccgcccta cgccggactt ttgccctcta gctactcggg gcgcggcaag
      841 gatgaaggcg gcttctcgct cttccacgcc tcgcggctgg cgctgatctt cttgcccgcc
      901 ctttcccaaa aactcttgtt gcgggccatg aagcgaatat tcagcttgtc cgtattgcgg
      961 aattccagca cctccacacc ctcgggcccc ggcacatagg tgtagggtac atccttgccc
     1021 acgaaaaacc cgtcccccgg ccccagcgcc tcggtgccca ttttaaggct cccggccagg
     1081 atgtaataca agcagtccgc cgtgtgcgaa tgcagcggca gcggatagcc gctcttgaac
     1141 cagaccttgc tcaggctgaa gccaggtgct gcatagacaa gctccaccac ctgcccatgc
     1201 gcatcatccg gtcccaccat gtaatgcgcc agcccctcgg caatggccgg ggtgaggtca
     1261 tccagcgaca tcacctcatg ctcgttataa tccttggcct cggcgccacg gaaaatctcg
     1321 aagcgcggcg cctcttcctt cttctcgtcg ctcattcaaa ccgctccacc atcaccggca
     1381 cggcaggcgg acggcgccgc gccgtgagcg ccaccagccc cgtggcgcag aggaacaggg
     1441 ccacggcaat gatggcccca ttataagagc ccgtccgcat gaaaatcacg gccgccaccg
     1501 gcacgcacgc caccgagaaa ggtagattga tgagattggc cacgccatag gcgcggctga
     1561 aactctcccg tccgaatgcc tcggacaaag catagctgaa caccggtacc acacccgcgc
     1621 cattcagccc gatgagcccc accagcccca ccgcctcaac gaaaggcgga tgcgccagca
     1681 gcagcagcca cagcaccgcc ggcaccagca ccacaaaggc gatggacagc gccccgccca
     1741 gccggtccgc cacccagcca taaagcagcg tacccacaat ccccaccaga gacatggtgg
     1801 caagcatggt cgccccttgc gtcgcggaca ggttccagct cctggccatc ggcaccatat
     1861 gcgcgcccag caccaccgag ctggtggagg aggcaatgaa ggcaaacagc agcgcccaga
     1921 aacgcggcgc gcgcacgagc tccgccatgc ccatccccgc cacgccacca tgtgccacgg
     1981 cccgcgccgg ctcatatccc ggcggcttgt cgaggatgaa aagattggcc accacgctca
     2041 ctacggacag cccggccagc gccagatagc tcgcggtcag cccgtgtttc tgcagcatcc
     2101 agttgatggc cagcggcata atggccaacc cgatcggcgt attcaccagc cccagcgcct
     2161 tgccgcggtt caccgcgaac cagcgcgtca ccagcgtgcc cggcaaaatc acgccaacgg
     2221 ccatgcccgg cccgatcagc agcccatagg caagcagata gaacagatag ctatgcgtca
     2281 ccgcgaggag caaaaacccg gccacgccaa ggcaggcccc caccagcatg agcagccgca
     2341 gcgaagcccg cgacgccagc acgccgaccc ccggcgcgca gatggcaata gccagattca
     2401 ccaccggtat ccccagcgtg gcaagcttga gccccacccc aagccgcgac tccaccccgc
     2461 tgagcagcac actgaacgtg ccatatatgc aggccagcac gatattggtg ttgatgaagg
     2521 cgatgatggc catacgcacg gcggcctgat ggttcttcgc gcccaccagc gcatcttcgg
     2581 cttgcagcat tctgtttccc tacccgcttc ttatgggccg tctttgcgcc ggccggtttt
     2641 tgccggcgca ccggcttgtc ctgactcctt tattagcgtg gcacagagcg gcgggcggaa
     2701 tcaagcatac gctggaacct gtccgttcct tcatgagctt cgggggcggc gcttcacctc
     2761 gaaccttgtc caagcctgcc accgggcggt ggcctgggga ttgcaggtcg ggacgaagga
     2821 acaggtgcgc gccagtcgaa ccaaggagcg ttgtttatca cgccgtcatc gcgagcgcgg
     2881 cacaaacaaa aacgccccgg atgtctcctt ccagggcgtt tctctaacca accgttacat
     2941 taccaaacca gaggcacttc cttcggcccc acaacgcccc ccggccaata ctcaatcttc
     3001 acgccaggct tgatcttgaa gttcggaatc cgcctcaaaa actcctggat gcaaatcttc
     3061 acctccatcc gcgccagatg cgcccccagg cagctatgcg cgccaccggc aaacgtcagc
     3121 accggcttgc gtggacggtg gaaattcacc tccgtcgggt tggggaaaat ctccggatcg
     3181 taattgcagg ccggcaaaat ggacgtcacc ttgtcgccct tcttcatctt cacaccacgc
     3241 agctcataat cctggcgcag cgtgcggcct gagaaggtga cggtgaacac gcgcagcagc
     3301 tcctcgacaa tattattgat attgtcaggc gtatcaatga tctcctggcg ccggtccgga
     3361 ttctccgcca accacagaaa gatatggttc agcgtcgcga acactgtatc cagcccggcg
     3421 atccagacga agaacaagaa gccaaacgtt tccttggcgg acatttcctc cccgcccggc
     3481 cggccgttca caatggcgct caccaacccg ccatccagtt tgccgcgctt ctccgcaatc
     3541 accttgttga ggtactgcgt cacctcgccc atcgagcgca cattggtctc gcggtcctgc
     3601 gcgtgcagca accccatggc ccagcgcacg aactcatcca tcatctcgcg cggcagcgcc
     3661 atgatgtcga gaaacacgcc cacgggcagc ggacggccga attccttggc gaattcgcaa
     3721 gaacccttat cgatgaagtt gtcgatcagc tcattggcca gcttgcggat gccaatttcc
     3781 atcgccagca ccgccttggg cgacaccagc gggtcgacca gcgcgcgata tttgcggtgc
     3841 tccggcggct caatctcaag cggaatgatc ttccagtaat catccgggtc gcgcggaaac
     3901 gggccggtgc cttcgctcgt gaatatctca ggatgacgca acacaaaata cgcatcctca
     3961 tatttcatca gattccaagc cggcggcgtc atatcgccat aagaatacac aatcggcggg
     4021 caattctgat gcaatgccga catgaattta tgcgggttga cgagaaattc cgggctctcg
     4081 gtaatgccca gcttgcgcac cagctcgggc ggcacgtgcg cagggatctt gatctcgccg
     4141 gtcaccggcg cggatgcagc catggtcgct ctccttaaac ccgccgcgtc aagcggcggc
     4201 gcattatatc agaactgggt ctcgggcagg taaacgacga tgccgttcag ctcgtccgtc
     4261 acgctaatct ggcaggagag gcggctggtc ttcttgcgct cggacgctgc ggcttccagc
     4321 atctcattct cagtctcaga gggctcaccc accttgtccg cccaggcctc gtccacatag
     4381 caatggcagg tcgcgcaagc gagcccgccg ccgcactcgg ccacgatgcc gtcgatcatg
     4441 ttgttgaccg cgccctgcat gatgctgtcg ccaaccggca catccacctc atgccgcgcg
     4501 ccattatgct gcac
//
LOCUS       DASQCV010000587         5208 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2946091, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000587 DASQCV010000000
VERSION     DASQCV010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5208
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2946091"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..364)
                     /locus_tag="VEQ16_08990"
     CDS             complement(<1..364)
                     /locus_tag="VEQ16_08990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64011.1"
                     /translation="MDDDFFALLAPLQGAIDGLKDTWHPDDAAYHADVYRQTMTSLSY
                     AYFAYFHATPEHPDWSPLWNPVYTLQPNPDDIYLYCPISSEYQYKLTGNRGTVKMLTI
                     DTQLSLSGMPWENDTKGTY"
     gene            complement(382..894)
                     /locus_tag="VEQ16_08995"
     CDS             complement(382..894)
                     /locus_tag="VEQ16_08995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYP64012.1"
                     /translation="MKIALTRPEPKFGPGAGLFRLDHFQIAYNTNDMDRAIALFGERY
                     GIKKFQKLEGPTPQGGKIRMYIAWAGGVMYELIWGEGPGTEIFQVGLPKDEFAIRPHH
                     LGYHVADEAAWNAVLADIERSGRKILHNTHVPGFLRAIIVDQPELGHFLEYILPEAGG
                     VQFFETAPNN"
     gene            1130..1651
                     /locus_tag="VEQ16_09000"
     CDS             1130..1651
                     /locus_tag="VEQ16_09000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007004632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HYP64013.1"
                     /translation="MHEILWPKNYVPGFADNFASNEVIVAGLNAGHVWPFLSNAVLWP
                     SYYANSANIRFHDGKGPELAEGTRFYFETFGFPVEAEVTEYVPPTAEHPGRVAWHGWA
                     GEGETRLDVHHAWLVEDLPGGRVRILTQETQNGKPAQDLAKAKPNPMINGHQDWLDGL
                     VAAARRGGDISGR"
     gene            1700..2461
                     /locus_tag="VEQ16_09005"
     CDS             1700..2461
                     /locus_tag="VEQ16_09005"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009538806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP64014.1"
                     /translation="MATLSGKRAVVTGAANGIGAAIAARFVAEGASVILADIDFERAS
                     ALAERLGQRAVRTDVARKAEIESLFEQVRRDWGTLDILVNNAGVTHAAVLDELTEEDF
                     DRVIAVNLKSALFATQSAVRLMGQGGSIINMSSVNAVLAIPNQIPYAISKGGMKQLTN
                     VTAQALAPRGIRVNAIGPGTILTDMGRAILEDEAQTRRVLSRTPMGRCGEPEEIAAIA
                     LFLASDQSSYITGQTLYADGGRLGLNYTVPLPGGV"
     gene            complement(2462..3691)
                     /locus_tag="VEQ16_09010"
     CDS             complement(2462..3691)
                     /locus_tag="VEQ16_09010"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HYP64015.1"
                     /translation="MTQVMKGIRILEVAQFTFVPAAGAILADWGADVIKIEHPKRGDT
                     QRGFINLGGQKMDPNRHTLIEHPNRGKRSVGLDVTTAEGQALLYEIAKTADVFLTNYL
                     PAARQKNKFDIEHIRAANPNIIYARGSAYGDKGPEREVGGFDNTAFWTRSGVGLAMTP
                     AELEGPLQQGLPAFGDSIGGMNIAGGISAALLHRERTGEAVELDVSLLSTGWWAAGAA
                     ISQAAETGRASRNRLPQSGCSVGNPFLGTYRTSDGGTIVLNTLTPGPYIQDIFSHLGI
                     PEAAQDPRFSTGEALMENWADASGLIVAAIGKKPFAYWREHLRTSRAQWAPSQSFVDL
                     LTDEQALANDMIIEVEAIDGGVPIKLVRGPIQFNHTPVATTRAPQASEHTETFLLEDM
                     GLDWDRIEQLKADGVIA"
     gene            3898..4041
                     /locus_tag="VEQ16_09015"
     CDS             3898..4041
                     /locus_tag="VEQ16_09015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64016.1"
                     /translation="MPSAIIHRPETQEWARAFGAINAENLVRTHKLFESGRSKGKIVL
                     EGF"
     gene            complement(4098..>5208)
                     /locus_tag="VEQ16_09020"
     CDS             complement(4098..>5208)
                     /locus_tag="VEQ16_09020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64017.1"
                     /translation="THADYGRFAVAYPWQEDIPPPQPYEFSLAFPGQKQQDGWSIFGD
                     FAVASAAFPLAFIPRDLHRPLLHYAYRAVSASLEPSTESDLWVPSYDWTSVLNDTNYI
                     TYGNISYSTLDGGMCDNEPIELGRTALVGLLHRNPRDGTEANRSVVLIDPFHGETDLN
                     AFPITGLLQTGGAAITAAMQQGNYSTSDLVLALDPSIYSRYMLSAERDGLLGGKALAT
                     AGLSAFMGFTCEAFREHDYYLGRQNCQTFLRKIFRLPADNKVFDRWREAHIDPTPFRN
                     EKGELPLIPLFGPASQPEGRKPWPYKALDPASLRPAIEKRVDAVINTELPDNFLGHLL
                     ASGVDLLAGGKAADYVLGLIQNSLEASNLLPKSSK"
BASE COUNT          931 a         1492 c         1741 g         1044 t
ORIGIN      
        1 agtaggttcc cttggtgtcg ttctcccacg gcatgcccga gaggctgagc tgggtgtcga
       61 ttgtcagcat cttcaccgtg ccgcggttgc cggtgagctt gtactgatat tcgctgctga
      121 tcgggcagta gaggtagatg tcgtccgggt tcggctgcag cgtgtagacc ggattccaca
      181 gcggcgacca gtcaggatgt tccggtgtcg catggaaata ggcgaaatag gcgtaggaga
      241 ggctcgtcat cgtctggcgg tagacatcgg cgtgataggc cgcgtcgtcc ggatgccagg
      301 tatctttcag cccgtcgatc gcgccctgca aaggggccag aagcgcaaaa aaatcatcgt
      361 ccatgacttg gctccagacg cttaattgtt aggcgcggtc tcgaagaatt ggacgccgcc
      421 tgcctcgggg agaatatatt cgaggaaatg ccccagctcc ggctggtcga cgataatggc
      481 gcgcaggaag cccgggacgt gggtgttgtg caggattttc cggcccgagc gctcgatgtc
      541 cgccagcacc gcgttccagg ccgcctcgtc ggcgacatga tagccgagat gatgcgggcg
      601 gatggcgaat tcatctttgg gcagcccgac ctggaagatt tcggtgccgg ggccttcgcc
      661 ccagatcagc tcgtacatca cgccgccggc ccaggcgata tacatgcgga ttttgccgcc
      721 ctgcggggtg gggccttcga gcttctggaa tttcttgatg ccgtagcgct cgccgaacag
      781 cgcgatggcg cggtccatgt cgttggtgtt gtaggcgatc tgaaaatggt cgagccggaa
      841 caggccggcg ccagggccga attttggctc cggccgggtc agggcgatct tcatgggcag
      901 ctcctccaac gccttgccgc gtttccgtcc gggggcggat gcggatctta taaagatagt
      961 gaacactctc ttagccaaga atgacgagcg gcgcaatggc gctggcgtgc agtggcgaaa
     1021 aaaacgccgt ttgcccgggc ggcgagaggt ttgctttggg ccagcgtgct cctatctggg
     1081 ggtggtccat ccaaccgcct ggcgcaggta tcactaagga gtgtcttgaa tgcacgagat
     1141 tttatggccc aagaattatg tgccgggctt cgccgataat tttgcctcca acgaggtcat
     1201 cgtggcgggg ctgaatgcgg gccatgtctg gccctttctc agcaacgcgg tgctctggcc
     1261 gagctattat gccaattcag ccaatatacg cttccatgac ggcaaagggc cggaactggc
     1321 cgagggaacg cgcttctatt tcgagacgtt cggttttccc gtggaggcgg aggtgaccga
     1381 atatgtgccg ccaacggctg aacacccagg ccgtgtggcc tggcatggct gggcgggcga
     1441 gggcgagacg cggctcgatg tgcatcatgc ctggctggtc gaggacctgc ccggcggcag
     1501 ggtacgaatc ctcacccagg aaacgcagaa cggcaagccc gcccaagacc tcgccaaggc
     1561 caaacccaac ccgatgatca acgggcacca ggactggctg gacgggctgg tggcagcagc
     1621 gcggcgcggt ggtgatataa gtggcaggta gcgtggcgcg ctggtgatgc gccgggtttc
     1681 tggcgaagaa gggattggca tggcaacatt gtctggcaag cgcgcggttg ttacgggggc
     1741 agcgaatggc atcggtgccg ccattgcggc gcgtttcgtg gcggagggcg cgtccgtgat
     1801 tctggccgac atcgatttcg agcgtgcctc tgcactcgcg gaacggctgg ggcagcgcgc
     1861 ggtgcgcacc gatgtcgcgc gcaaggcgga gatcgaatcc ctcttcgagc aggttcgccg
     1921 ggattggggc acgctggata ttttggtgaa taatgccggc gtcacccatg ccgcggtttt
     1981 ggatgagctg actgaggagg atttcgaccg tgtcatcgcc gtcaatctga aatccgcttt
     2041 gttcgctacc cagagcgcgg tgcggctaat ggggcagggt gggtcgatca tcaatatgtc
     2101 gtcggtcaat gccgtgctcg cgattcccaa ccagattccc tacgcaattt ccaagggcgg
     2161 catgaagcag ctgaccaatg tgacggcgca ggcacttgcc ccgcgcggca tccgcgtcaa
     2221 cgccatcggt cccggtacca tccttacgga tatgggccgg gccattctcg aggatgaggc
     2281 gcagacgcgc cgcgtgctga gccgcacccc gatgggacgc tgcggcgagc cggaggaaat
     2341 cgccgccatc gccctcttcc tcgccagcga ccagtcatcc tacatcacgg gccagacgct
     2401 ctatgccgat ggcggccggc tggggctcaa ctacacggtg ccattgcccg gcggggtgtg
     2461 atcacgcgat cacgccatcc gccttcagct gctcgatacg gtcccaatcc agccccatat
     2521 cttccagcag gaatgtctcc gtatgttcgg aggcctgcgg cgcgcgcgtg gtggcgactg
     2581 gggtgtgatt gaactggatc ggcccgcgca cgagttttat gggcacgccg ccatcgatgg
     2641 cctcgacctc tatgatcatg tcgttggcta gagcctgctc gtcggtcagt aggtcgacga
     2701 agctctgcga cggtgcccat tgcgcgcgcg atgtgcgcag atgctcgcgc caataggcga
     2761 acggcttctt gccgatggcg gcgacgatga ggccgctggc atcggcccag ttctccatca
     2821 gcgcctcgcc ggtggagaag cgcgggtcct gtgccgcctc ggggatgccg agatgggaga
     2881 aaatatcctg gatatagggg ccaggggtaa gagtgtttaa gacgatcgtg ccgccgtccg
     2941 acgtgcggta ggtgccgagg aacgggttgc ccacggaaca gccggattgg ggcaggcggt
     3001 tacggctcgc gcggccggtc tcagccgcct gggagatggc ggcgccggct gcccaccagc
     3061 cggtgctgag cagcgataca tccagctcca ccgcctctcc ggtgcgctca cggtgcagca
     3121 gagcggcgga aatgccgccg gcgatgttca tgccgccgat ggaatcgccg aaggccggaa
     3181 ggccctgctg tagcggccct tccagttccg ctggtgtcat ggccaggccg acgccggatc
     3241 gggtccagaa ggcggtattg tcgaacccgc ccacctcgcg ctccggcccc ttgtcgccat
     3301 aggcgctgcc gcgggcgtag atgatgttgg ggttggcagc gcggatatgc tcgatgtcga
     3361 acttgttctt ctggcgcgcg gcggggagat aattggtgag gaacacatcg gccgtcttgg
     3421 cgatttcgta gagcagcgcc tgcccttccg cggtggtcac atccagcccg acgctgcgct
     3481 tgccgcgatt ggggtgttcg atcagcgtgt gccggttggg gtccatcttc tggccgccga
     3541 gattgatgaa gccgcgttgt gtgtcgccgc gcttgggatg ctcgatcttg atcacgtccg
     3601 cgccccagtc ggccaggatg gcgccggccg cgggcacgaa agtgaattgc gccacttcga
     3661 gaatccgaat ccctttcatg acctgggtca tgtgtttccc cttttctggc cgctccaggc
     3721 ggcctggttt tggctctatc ttgcgctgac tatccgggag cgcgccgccg ccgtcaaccg
     3781 tcatagtgtc agtttcttgg tcttgccgcc attcgtactg tcccgatgcc ccgttcttgc
     3841 gcagcttcag ttcaacgcca catgggcttg tgcgtcatca caggagacaa aatttgcgtg
     3901 ccatcggcta tcatacaccg tcccgagacc caggaatggg cgcgcgcctt tggcgccatc
     3961 aatgcggaaa atctcgtccg cacgcataag ctgttcgaga gtggcaggtc caagggcaag
     4021 atcgtgctcg aaggattttg acccgccctg agagtttcat gttcaatgcg cgttggagga
     4081 agaggcgccg cctttcgcta tttggaagat ttcggaagaa ggttcgacgc ctcaagcgaa
     4141 ttctggatca gccctagcac ataatccgcg gccttgccgc cagccaggag atcgacgccg
     4201 ctggcgagca gatggcccag aaaattgtcg ggcagttcgg tattgataac ggcgtccacg
     4261 cgtttttcga tggcggggcg caggctggcg ggatcgagcg ccttataggg ccagggcttg
     4321 cggccttcgg gctggctggc cgggccgaat agcgggatca aaggcagctc gcccttttcg
     4381 ttgcgaaatg gagtcggatc gatgtgggcc tctctccaac gatcgaatac tttattgtcc
     4441 gccggtaggc ggaagatctt gcgcaggaat gtctggcaat tctgccggcc gagataataa
     4501 tcatgctcgc ggaaggcttc gcaggtgaag cccatgaagg cggaaagccc agcggttgcg
     4561 agggctttgc cgccgagcag gccatcacgt tcggcgctga gcatgtaacg gctatagata
     4621 ctgggatcga gggccagcac gaggtcggac gtgctgtaat tgccttgctg catggcggcg
     4681 gtgatcgccg cgccgccggt ctggagcaaa ccggtgatgg ggaatgcatt gagatcggtt
     4741 tcgccatgga acgggtcaat aagcaccacc gaacggttgg cctcggtccc gtcgcgcgga
     4801 ttgcggtgaa gcaggcccac cagtgccgtg cggcccagct cgatcggctc attatcgcac
     4861 atgccgccat ccagcgtgct gtagctgata ttgccgtagg tgatgtaatt cgtatcgttc
     4921 aggacgctcg tccagtcata gctgggcacc cacagatcgc tctctgtcga gggctcgagc
     4981 gaggcgctga cggcgcgata ggcataatgg agcagcggcc ggtgcaggtc gcgcgggatg
     5041 aaggcgaggg gaaaggccgc ggaggcgaca gcgaaatcgc cgaatatgct ccagccatcc
     5101 tgctgcttct ggccggggaa ggcgagactg aattcgtaag gttgaggcgg cggaatatct
     5161 tcctgccacg gataggcgac ggcgaagcgc ccgtaatccg catgggtc
//
LOCUS       DASQCV010000588         1875 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1787590, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000588 DASQCV010000000
VERSION     DASQCV010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1787590"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..654)
                     /locus_tag="VEQ16_09025"
     CDS             complement(<1..654)
                     /locus_tag="VEQ16_09025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP64018.1"
                     /translation="MQRRQFISSAAAMLAAPALARVAAAEKFTIILDWFVNPDHAPLF
                     AAKYCGAYARAGLDVNLIAPTDPDLPPRLLAAGKADAALSYQPQLYLLVDQGLPVRRT
                     GTLIGKPLNTLTALGSSGIKTLADLKGKKIGYSVAGMETVQIATMLKTVGLTNDDVTL
                     VNINFNLVTSLQSHQVDAVIGTYRTYEDIQLAQAGLDPVIFYPEQHGVPTSEELILLT
                     "
     regulatory      complement(647..743)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            833..1807
                     /locus_tag="VEQ16_09030"
     CDS             833..1807
                     /locus_tag="VEQ16_09030"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF027681.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HYP64019.1"
                     /translation="MGFWQGKNVLVTGATGFLGGWISRQLLEQGASLITIQRREKPKS
                     QFALAKLAERALVLEGSLLDAAFMADLFEGQKFDAVFHLASMVDVNAALRDPPTALQA
                     SIGTTATLLEQIRQNQPGTLVVVASSDKAYGHQPVPYREDKPLEPLHPYEIAKATQDL
                     LAQSYGRLFGLNIAVTRCGNFFGGYDFAFERIIPYAITQALRGQAPVLRSDGQFTRDF
                     LYVEEAAAAHLLLAEKLAADATLRGEAFNFSHEVEITILRLVTSILTLMGSELKPEIA
                     LTAKAEITHMRLDCTKARERLGWQPKLDFEAGVRKTIAWYRDNQRAFS"
BASE COUNT          371 a          586 c          561 g          357 t
ORIGIN      
        1 ggtcagcaga ataagctcct ccgacgtggg cacgccatgc tgctccggat agaaaatcac
       61 cgggtccagc ccggcctggg cgagctggat atcctcatag gtgcggtagg tgccaatcac
      121 cgcatccacc tggtgcgact gcagcgaggt gacgaggttg aaattgatgt tcaccaacgt
      181 gacgtcgtca ttcgtcagcc ccaccgtttt cagcatggtg gcgatttgca ccgtctccat
      241 gccggccacg gaataaccga tcttcttacc tttcaggtca gccagcgtct tgataccgct
      301 gctgcccaag gcggtgaggg tgttcagcgg cttgccgatg agcgtgccgg tgcggcgcac
      361 gggcaggccc tggtcgacca gcagataaag ctgcggctgg taactcaaag ccgcatcggc
      421 tttgccggcg gcgagcaggc gtggcggcag gtccgggtcg gtcggcgcga tcaggttcac
      481 atccagcccg gcacgcgcat aggcgccgca atatttggcg gcgaacaaag gcgcatggtc
      541 cggattcacg aaccagtcca gaatgatggt gaatttctcc gccgcggcga cacgcgccaa
      601 agcgggcgcg gcaagcatgg ctgcagcact ggagataaat tgacggcgtt gcacggtgga
      661 ctcctcccta cgctggcatg acccagacag gttcggcggg tatgatctca gcccgcgaca
      721 tgcggacacc ccggtgtacg cagcttgttt ccgaattgcc tgatcccgtc aagcccggct
      781 tgacgtgagg tccagggcat ggacttgtgc aaccaagcga cagggggcga atttgggatt
      841 ctggcagggc aagaatgttc tggtcaccgg cgccaccggc tttctgggcg gctggatctc
      901 ccggcagctc ctggagcagg gcgcgtcgct catcaccatc cagcggcgag agaagccgaa
      961 atcgcaattc gccctcgcca aactcgccga gcgcgccttg gtgctggaag gctcgctgct
     1021 cgatgctgcc ttcatggccg acctgttcga gggccagaaa ttcgacgcgg tcttccacct
     1081 cgcctcgatg gtggacgtca acgccgccct gcgcgacccg cccactgctc tgcaggccag
     1141 catcggcacc accgccacgt tgctggagca aatccgccag aaccagcccg gtacgctcgt
     1201 ggtcgttgcc tcctcggaca aagcctacgg ccaccaaccc gtcccctacc gcgaggacaa
     1261 gccgcttgag ccgctgcacc cttacgaaat cgccaaggcc acgcaggatt tattggcaca
     1321 atcctatggg cggctgttcg gcctcaacat cgccgtcacg cgctgcggca atttcttcgg
     1381 cggctatgat ttcgccttcg aacgcatcat cccctatgcc atcacccaag ccctgcgcgg
     1441 ccaggcgccg gtgctgcgtt cggacgggca attcacgcgt gatttcctat acgtggaaga
     1501 agccgccgcg gcgcatctgc tgctcgccga gaaactcgca gctgatgcca cgctgcgcgg
     1561 cgaggccttc aatttctcgc acgaggtgga aatcaccatt ctgcggctcg tcaccagcat
     1621 tctcactttg atgggcagcg agttgaagcc ggaaatcgcc ttgacggcca aggccgaaat
     1681 cacgcatatg cggctcgatt gcaccaaggc gcgcgagcgc ctcggctggc agcccaagct
     1741 ggatttcgag gcgggggtta gaaaaacaat cgcctggtac agggacaacc aaagggcttt
     1801 ttcttgaaga aagaatgcgc ctttttgtaa aaaggcgcac caaaaacttt tataatttgg
     1861 gcctgtgttt gtgac
//
LOCUS       DASQCV010000589         4953 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2615216, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000589 DASQCV010000000
VERSION     DASQCV010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4953
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2615216"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..722
                     /locus_tag="VEQ16_09035"
     CDS             <1..722
                     /locus_tag="VEQ16_09035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006558284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SufD family Fe-S cluster assembly protein"
                     /protein_id="HYP64020.1"
                     /translation="MRDENQLHAAVVELVALENAKIKYSTVQNWYPGDENGKGGIYNF
                     VTKRGACRGKNSKISWTQVETGSAITWKYPSCVLQGDNSVGEFYSVAVTNNHQQADTG
                     TKMIHLGRNTTSTIISKGISAGKSDNTYRGLVKILATASGARNFTQCDSLLIGDNCGA
                     HTVPYIESRNSSAKVEHEATTSKIAEDQLFYCRSRGLSEEDAVGLIVNGFCKDVLKEL
                     PMEFAVEAQKLLSVSLEGSVG"
     gene            722..1465
                     /gene="sufC"
                     /locus_tag="VEQ16_09040"
     CDS             722..1465
                     /gene="sufC"
                     /locus_tag="VEQ16_09040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HYP64021.1"
                     /translation="MLEIKNLHARIGEKEILKGVNLVVPDGQVHAIMGPNGAGKSTLS
                     YVLSGREGYEVTEGEVVYHGQNILEMEPEDRAAAGIFLAFQYPVELPGVGNANFLRTA
                     VNAVRRKRGEPELDAVAFLKQARAAIKSLHMKEDFLKRNVNVGFSGGEKKRNEMLQMA
                     LLKPGLAILDETDSGLDIDALKIVAEGVNALRNEKFSALVITHYQRLLDHIVPDVVHV
                     LSGGRIVRSGPAALALELEARGYAGLEAA"
     gene            1467..2564
                     /gene="sufD"
                     /locus_tag="VEQ16_09045"
     CDS             1467..2564
                     /gene="sufD"
                     /locus_tag="VEQ16_09045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HYP64022.1"
                     /translation="MTALPTKKLEAWRYTDLAPLSALSFAPPPPAAVPALPALDLPRL
                     VFLNGRFTEALSSHLGIVTRFAPGAEISAQPLALINAEQAQDGVTLTVPDGVDAGTIL
                     LIAHASASAPFAAHLRHRISLGLGAKLTIIDIAKGEGVYWHNPVSDITLAAGAQLSHY
                     RLQDESREAFNTATIRASIAAGAGYEHFTATIGAQLSRTEIHATLKGEAASAQLNAAQ
                     LLTGEQHGDFTSVVAHKAPNCPSRQTVKSVLSGLARGVFQGRIEVDRIAQKTDGYQMS
                     RALLLSPNAEMDIKPELQIYADDVKCSHGATIGTLDEDQLFYLRSRGIPEAEARTLLI
                     RAFLDDALAPVVQEDAKTLFEAAIENWWSSQ"
     gene            2561..3799
                     /locus_tag="VEQ16_09050"
     CDS             2561..3799
                     /locus_tag="VEQ16_09050"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HYP64023.1"
                     /translation="MSTTLDRYDITALREDFPILKEKVYGKDLVFLDSAASAQKPRQV
                     IDAMTQVMTSQYANVHRGLHYMSEKASEAYEGARDKVAAFINAGSRDEIVFTRNATES
                     INLVAYSWGRTALKPGDVVAVTQMEHHANLVPWQMLRDAHGTELRIIKITDAGEIDWD
                     SLEDVFADGRVKLLSVTQMSNVLGTYTPVERLAKFAHEHGAKILIDGCQAIVHRKIDV
                     RAIDADFFVFSGHKLYGPSGIGVLYAKAEILDAMPPFMGGGDMIASVSYEKSTWAKPP
                     HRFEAGTPAIIETIGLGAAIDYVNAIGLDAIAAHEAALTDHALAVLPNIEGLRVLGSA
                     QDRGGVFSFVMKDAHAHDIATLLDRQGIAVRAGHHCAEPLMGRLGVTSTARASFALYT
                     TPEEIDALAKGLERIRKIFA"
     gene            3796..4197
                     /locus_tag="VEQ16_09055"
     CDS             3796..4197
                     /locus_tag="VEQ16_09055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010506393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HYP64024.1"
                     /translation="MSELYQKIVLDRTRYPRHAGKPAQFDAHGTGVNKLCGDKVSIYL
                     TREGMDLHHETEGCAILTASADLMAEAAHGKDAAQIHELAAAFTSAVTTGTPNPALGE
                     LNALTPVSQFPSRIGCATLPWRALEEALQNV"
     gene            4190..4555
                     /locus_tag="VEQ16_09060"
     CDS             4190..4555
                     /locus_tag="VEQ16_09060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system Fe-S cluster assembly protein"
                     /protein_id="HYP64025.1"
                     /translation="MSETEKMVPVTSWTPDGETAPRLSEEAVINAICTVYDPEIPVNI
                     YELGLIYAVELADNGDVKVEMSLTAPGCPSAQELPEMVRSAIAAVEGAGNVTVDVVWD
                     PPWDPSRMSEDARLSLNMF"
     gene            4565..4933
                     /locus_tag="VEQ16_09065"
     CDS             4565..4933
                     /locus_tag="VEQ16_09065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HYP64026.1"
                     /translation="MEVTQTPAKSRRELPPLMTLSEAAASRLEKLYATGQQGKLLRIS
                     VNARGCSGMSYQMDWVDEAGPVDEKVTSHGLTILVDRKATLFLIGSVMDYKEDKLTRG
                     FTFENPNEKGRCGCGESFHV"
BASE COUNT          999 a         1611 c         1448 g          895 t
ORIGIN      
        1 cgatgcgcga cgagaaccag cttcatgccg ccgtggtgga gctggtggcg ctggagaatg
       61 ccaagatcaa gtacagcacg gtgcagaact ggtaccctgg cgatgagaac ggcaaaggcg
      121 gcatatacaa cttcgtcacc aagcgcggcg cctgccgcgg caagaattcg aaaatttcct
      181 ggacccaggt ggaaaccggc tcggccatca cctggaaata tccctcctgc gtgctgcagg
      241 gcgataattc cgtgggcgag ttctactccg tcgccgtgac caataaccac cagcaggcgg
      301 atacgggcac gaaaatgatc catctggggc gcaacaccac cagcacgatc atctcgaagg
      361 gcatttccgc cggcaagtcg gacaatactt atcgcggctt ggtcaaaatc ctcgccaccg
      421 cttccggcgc acgcaatttc acccagtgcg acagcctgct catcggcgac aattgcggcg
      481 cacacactgt gccctatatc gagagccgca attcctcggc aaaggtcgag catgaagcca
      541 ccacttcgaa gatcgccgag gaccagctct tctattgccg ctcgcgcggc ctctccgaag
      601 aggacgcggt cggcctcatc gtcaatggtt tctgcaagga tgttctgaag gagctgccga
      661 tggaattcgc cgtcgaagcg caaaaacttc tctccgtgtc tctggaaggg tctgtcggct
      721 gatgttggaa atcaagaatc ttcatgcccg cattggcgag aaggaaattc tcaagggcgt
      781 gaatctcgtg gtgcccgacg gccaggtcca tgccatcatg ggcccgaacg gcgccggcaa
      841 atcgaccttg tcttatgtgc tctccggccg tgaaggctat gaggtgacgg aaggcgaagt
      901 cgtctatcac ggccagaata ttctggagat ggagcccgaa gaccgcgccg cggccggtat
      961 cttcctcgct ttccagtacc cggtggagct gccgggcgtg ggcaatgcca atttcctgcg
     1021 caccgccgtg aatgccgtgc gccgcaagcg cggcgagccg gagctggatg cggttgcgtt
     1081 cctcaagcag gcccgcgcag cgatcaagag cctccacatg aaagaggatt tcctcaagcg
     1141 caacgtgaat gtcggcttct ccggcggtga aaagaagcgc aacgagatgc tgcagatggc
     1201 cctgctgaag cctggtcttg ccattctcga cgagacggat tccggcctcg atatcgacgc
     1261 tctgaaaatc gtcgccgaag gcgtgaacgc gctgcggaac gaaaaattct ccgcgctggt
     1321 tatcacccat taccagcgcc tgctcgacca tatcgtgccc gatgtggtgc atgtgctctc
     1381 gggcgggcgc atcgtgcgct ccggtcccgc cgctctggcg ctggagctgg aagcgcgcgg
     1441 ctatgcaggg ctggaagccg cgtaacatga ccgcgctgcc gacgaagaaa ctggaagcct
     1501 ggcgctatac cgacctcgcg ccgctctccg cgctgagttt tgcgccgccg ccacctgccg
     1561 cggtgcccgc gctgccggcg ctggacctgc cgcgcctggt gttcctcaat ggcaggttca
     1621 ctgaggcgct gtcttcgcac cttggcatcg tcacgcgttt cgcgccgggc gcagaaatct
     1681 cggcgcagcc gttggcgctc atcaatgccg agcaggcgca ggatggcgtg acgctgaccg
     1741 tgccggatgg tgtggatgcc ggcaccatct tgcttattgc ccacgcctcc gccagcgcgc
     1801 ccttcgccgc gcatctgcgc caccgcatct cgttggggct gggggcaaaa ctcaccatca
     1861 tcgatatcgc caaaggcgaa ggcgtgtatt ggcataatcc cgtgtcggat atcacgctgg
     1921 cggcaggtgc gcagctaagc cattaccgcc tgcaggatga aagccgtgag gctttcaaca
     1981 ccgccaccat ccgcgcttcc atcgccgccg gggcgggtta cgagcatttc accgccacca
     2041 tcggcgcgca gctttcacgc acggaaatcc acgccacgct gaagggcgag gcggccagcg
     2101 cgcagctgaa tgccgcgcag cttctcaccg gtgagcagca tggcgacttc acctccgtgg
     2161 tcgcccacaa agcccccaac tgcccctcgc gccaaaccgt aaaatccgtc ctctccggcc
     2221 tcgcgcgcgg cgtgttccag ggccgcatcg aggtggaccg catcgcccag aagaccgacg
     2281 gctaccagat gagccgcgct ttgctgctct cgcccaatgc cgagatggac atcaagcccg
     2341 aactgcaaat ctatgccgac gacgtgaaat gcagccacgg cgccaccatc ggcacgctgg
     2401 acgaggacca gcttttctat ctgcgctcgc gcggcatccc cgaggccgag gcccgtacct
     2461 tgctcatccg tgccttcctc gacgacgctt tggcgccggt cgtccaggag gatgcgaaaa
     2521 ccctgtttga ggccgccatc gaaaattggt ggagcagcca atgagcacga ctttggaccg
     2581 ctacgacatc actgccctgc gcgaggattt tccgatcctc aaggaaaaag tgtatggcaa
     2641 ggatctggtg tttctcgatt ccgccgcgag cgcgcaaaag ccgcgccagg tgatcgacgc
     2701 catgacgcag gtgatgacat cgcaatatgc caatgtgcat cgcggcctgc attatatgtc
     2761 ggaaaaagcc tccgaggcct atgagggggc acgcgacaag gtcgccgcct tcatcaacgc
     2821 gggaagccgc gacgaaatcg ttttcacccg taacgccacg gaatccatta atctcgtcgc
     2881 ctatagctgg ggccgcactg cgctcaagcc cggcgatgtg gtggcggtga cgcagatgga
     2941 gcatcacgcc aatctcgtgc cctggcagat gttgcgcgac gcgcacggca cggaattgcg
     3001 catcatcaaa atcaccgatg ccggcgaaat cgactgggac tcgctcgaag acgtctttgc
     3061 cgatggccgc gtcaaacttc tctccgtgac acagatgtcc aacgtgctcg gcacttacac
     3121 gccggtcgag cgcctggcca aattcgccca tgagcacggt gcgaaaatcc tcattgatgg
     3181 ctgtcaggcc attgtacatc gcaagatcga cgtgcgcgcc atcgatgccg atttcttcgt
     3241 cttctccggc cacaagctct acggcccgtc cggcatcggc gtgctttatg cgaaggccga
     3301 aatccttgac gccatgccgc ctttcatggg cggcggcgac atgatcgcca gcgtctccta
     3361 cgagaaatcc acctgggcca agccgccaca ccgtttcgag gccggcacgc cggcgatcat
     3421 cgagaccatc ggtcttggcg ccgccatcga ctatgtcaac gctatcggcc tggacgcgat
     3481 cgccgcgcat gaagcggccc tcaccgacca tgcactcgct gtgctgccca atatcgaagg
     3541 cctgcgcgtc ctcggttccg cgcaggatcg cggcggcgtc ttctccttcg tgatgaagga
     3601 cgcgcacgcg cacgacatcg ctaccttgct ggaccgccag ggcatcgccg tgcgcgctgg
     3661 gcatcattgc gccgaaccgc tgatgggccg cctcggcgtc accagcactg cccgtgccag
     3721 ttttgccctc tacaccacgc ccgaggaaat cgacgctctc gccaaaggcc ttgagcgtat
     3781 caggaagatt ttcgcatgag cgagctgtat caaaagattg tgctcgaccg cacccgctac
     3841 ccgcgtcatg ccggcaaacc cgcgcagttc gacgcccacg ggacgggtgt gaacaaactc
     3901 tgcggcgaca aggtcagcat ctaccttaca cgcgaaggga tggacctcca tcacgaaacg
     3961 gaaggctgcg ccatcctcac cgccagcgcc gacctgatgg ccgaagcggc gcatggcaaa
     4021 gatgctgcgc agatccacga actggcagcc gctttcacca gcgccgtgac caccggcacg
     4081 cccaaccccg cgcttggcga gctcaacgcg ctgacgccgg tttcccaatt tccctcccgc
     4141 attggctgcg ccaccctgcc gtggcgcgcg cttgaagagg cgctgcaaaa tgtctgagac
     4201 cgagaaaatg gtgcccgtga caagctggac gcccgatggc gaaaccgcgc cgcgtctctc
     4261 ggaagaggcg gtgatcaacg ccatctgcac tgtgtacgat ccggaaatcc cggtgaatat
     4321 ctacgagctt ggcctcatct atgccgtaga gctggccgat aatggcgatg tgaaggtgga
     4381 aatgagtctc accgcgcctg gctgcccttc ggcgcaggaa ctgccggaga tggtgcgcag
     4441 cgccatcgcc gccgtggagg gggctggcaa tgtcacggtc gatgtggtgt gggacccgcc
     4501 ctgggacccg agccgcatga gcgaggatgc acgtctctcg ctgaacatgt tctgaggtgg
     4561 aatcatggaa gtaacccaaa cccccgccaa atcccgccgc gaattgccgc cgctgatgac
     4621 cctctcggag gccgccgctt cgcgcctgga aaaactctat gccaccggcc agcagggcaa
     4681 gcttctgcgc atctccgtca atgcgcgcgg ttgctccggc atgtcctacc agatggactg
     4741 ggtcgatgaa gccggacccg tagatgaaaa agtcaccagc cacggcctta cgattctcgt
     4801 ggaccgcaaa gccaccttgt tcctcatcgg ctcagtgatg gactacaagg aagacaaact
     4861 cacccgcggc ttcaccttcg aaaaccccaa cgaaaaaggc cgctgcggct gcggcgagag
     4921 ctttcacgtt taacccgatg ctcgaaggtc gcc
//
LOCUS       DASQCV010000590         1621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1124933, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000590 DASQCV010000000
VERSION     DASQCV010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1124933"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(88..789)
                     /locus_tag="VEQ16_09070"
     CDS             complement(88..789)
                     /locus_tag="VEQ16_09070"
                     /inference="COORDINATES: protein motif:HMM:NF024795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hint domain-containing protein"
                     /protein_id="HYP64027.1"
                     /translation="MAAANIWQGPSGGDTPELVATDSTGGNGHRTVYNLETSSGSSIP
                     AFMAGTRLATEDGEIAVEDAVPGTRLRLADGRIAEVCWLGWREIWTRFADPLRAFPIR
                     ILAGALADGMPARDLRVSPGHAIFLDGLLVQASALVNGVSIVRETDMPESFRYYHVEL
                     ATHELLLAESCPAESFADNIDRMNFHNWDQRETPTEPVVEMELPCAKLARQLPAALCN
                     VLAARAEAFASHHAA"
     gene            complement(964..1341)
                     /locus_tag="VEQ16_09075"
     CDS             complement(964..1341)
                     /locus_tag="VEQ16_09075"
                     /inference="COORDINATES: protein motif:HMM:NF017849.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF934 domain-containing protein"
                     /protein_id="HYP64028.1"
                     /translation="MPLIDVHGAALEDQDAPTIHLAPDAKLEEIAPRLGEIGRIEIEF
                     PKFRDGRGFTLARTLRERFGYKGDIRATGHFLPDQFGALQACGFTSFVTPPEHAPAQF
                     AAVTAARQPGQLLRRMVARAREG"
     gene            complement(1328..>1621)
                     /locus_tag="VEQ16_09080"
     CDS             complement(1328..>1621)
                     /locus_tag="VEQ16_09080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase"
                     /protein_id="HYP64029.1"
                     /translation="ISGCINACGHHHVGHIGLLGVDKNGEEVYQITLGGAADEQAAIG
                     GIIGPAVPTAKVPEAIEAIVEAYLDIRQEGERFIDTYRRLGNKPFKEAVYAAH"
BASE COUNT          318 a          504 c          518 g          281 t
ORIGIN      
        1 atacaggcaa atcaatgcct gcccagcatg cagaaaaaag ggcgagccct tgcggagctc
       61 gccctcggca gaggaagccg tcttgtctca ggcggcgtga tgggaggcga atgcctccgc
      121 gcgggcggca agcacgttgc acaaggcggc cggcagctgg cgagccaatt tggcgcaggg
      181 cagctccatc tccaccacgg gctcggtcgg cgtttcgcgc tggtcccagt tatggaaatt
      241 catgcggtcg atattatcgg cgaagctttc cgccgggcag gattctgcca gcagcagctc
      301 atgcgtggcc agctccacat gataatagcg gaaactctcc ggcatatcgg tttcgcggac
      361 gatgctgacc ccgttcacca gcgcgctggc ctgcaccagc agcccgtcga ggaaaatggc
      421 atggccgggc gaaacccgaa ggtcacgggc cggcatgcca tcggccaggg cgccggccag
      481 gatgcgaatg ggaaaggcgc gcagcgggtc ggcgaagcgg gtccagatct cgcgccagcc
      541 gagccagcac acttccgcga tgcgaccatc tgccaggcgc agacgggtgc ccggcaccgc
      601 atcctccacc gcgatctcgc catcttccgt ggcaaggcgc gtgccggcca tgaaggcagg
      661 gatggacgag cccgaggagg tctcgagatt ataaacggtc cgatgaccat tgccgccagt
      721 gctgtctgtg gccaccagct cgggcgtgtc gccgccgctg ggcccctgcc aaatatttgc
      781 cgctgccatt tccccgcctt cccaaaaaga ggccttcccg aggccgaaca gagacgggtt
      841 agcaagcagt catgaatatg acatctaaat tatcagcgag caggcgcttt atcaccgata
      901 attgaccgat tatcggaatt tgcgacagaa tagcttagat attttatttt gaaacaaagt
      961 tactcaaccc tcgcgtgccc gcgccaccat gcgccgtagc aactggccag gctggcgcgc
     1021 ggcggtaacg gcggcgaatt gcgccggcgc atgctcgggc ggggtcacaa aagaggtaaa
     1081 cccgcaggcc tggagggcgc cgaactggtc cgggaggaaa tggccggtgg cgcggatatc
     1141 gcccttatag ccgaaacgct cccgcagcgt gcgcgccagg gtgaagccgc gcccgtcgcg
     1201 gaatttggga aattcgatct cgatccgccc gatctcgcca aggcgcggtg cgatctcttc
     1261 cagcttcgca tcgggcgcga gatggatggt gggcgcgtcc tggtcttcga gcgccgcgcc
     1321 atgaacatca atgagcggca tagacggcct ccttgaacgg cttgttgccc aggcggcggt
     1381 acgtgtcgat gaaacgctca ccctcctggc ggatatcgag ataggcctcg acgatggcct
     1441 cgatggcctc gggcactttc gcggtgggca cggcggggcc gataattccg ccgatcgccg
     1501 cctgctcatc ggcggcgccg cccagcgtga tctggtagac ttcctcgcca ttcttatcga
     1561 cgccgagcag cccgatatgg ccgacatggt gatgcccgca ggcattgatg cagccggaga
     1621 t
//
LOCUS       DASQCV010000591         1652 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1621996, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000591 DASQCV010000000
VERSION     DASQCV010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1621996"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(35..1546)
                     /locus_tag="VEQ16_09085"
     CDS             complement(35..1546)
                     /locus_tag="VEQ16_09085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HYP64030.1"
                     /translation="MPNSATAGGFLLVLAIVLPVTGVLLSLVLGGRHAERVVLILMPA
                     GLAVALAIAIEVWRSHNVLQYFVGNWDPPLGVAFRADGLSAAMLVATALLVCGIGLFA
                     RGQFTSPGQAERRAPLVFWTLLPAVWGALNAVFIGGDLFNLYVALELLTFAAVPLVSL
                     DGRAETIAAALRYLLFALFGSILYLLAAVLFYGAYGTLDIVLLSGRIRAEPVAWAAIS
                     LMTAGLLAKAALYPFHLWLPPAHAGAPAPASAILSGLVVKAPFFLVIRLWFDIMPRMP
                     EPAAAQVLGILGGAAILFGSIVALRQARLKLLIAYSTVAQIGYLFLMLPLALTPEIGH
                     PWSTFAWTGGILQAISHAFAKAAMFMAAGLIAEGIGHDRITELAGIGRALPMTVFAFA
                     LGGVSLMGLPPSGGFIAKAMLLTAAVAEGQWWWAVIVLIGGLLAGGYVFLVLARALAD
                     PIEPLRLLTTIPPSRQAVVLVLALCAVVLGIVPLRPSELLQIGRPDIAVAGFR"
BASE COUNT          376 a          560 c          515 g          201 t
ORIGIN      
        1 ctgcaatccg gccatattgg ccccgggcag cgattcacct gaaacccgct accgcgatgt
       61 caggacggcc gatctgcaac agctccgatg gacgcagcgg cacgatgccg agcaccaccg
      121 cgcacagcgc cagcacgagg accaccgcct gccggctcgg aggtatggtt gtcagcagcc
      181 tcaatggctc gatcgggtcg gccagcgccc gggcaagcac aaggaagacg taaccgcccg
      241 cgagcagccc gcctattaga acgatcacgg cccaccacca ttggccctcc gcgaccgccg
      301 ccgtcagcag catcgccttc gcgataaagc cgccgctggg cggcaggccc atcagagaca
      361 cgccgccaag cgcgaaagca aagacggtca tcggaagcgc ccgaccgatg cctgcaagct
      421 ccgtaatccg gtcgtgcccg atcccctcgg cgatcagtcc tgccgccatg aacatggccg
      481 ccttggcaaa ggcatgtgag attgcctgaa gaatgccgcc ggtccaggca aacgtgctcc
      541 acggatgacc gatttcgggg gtgagagcaa gcggcagcat cagaaacagg tagccgatct
      601 gcgccaccgt cgaataggcg atcaagagtt tcagccgcgc ctggcggagc gccacgatgc
      661 tgccgaagag aatcgcagcg ccaccgagaa tgccgagcac ctgcgcggct gccggctccg
      721 gcattctggg catgatgtcg aaccagagcc ggatgacgag aaaaaacggc gccttgacga
      781 ccagccccga caagatggcg ctggccgggg ccggcgcacc ggcatgggca ggcggaagcc
      841 acaggtgaaa cgggtaaagc gccgccttgg ccagcagccc cgccgtcatc agcgaaatcg
      901 ccgcccaagc cacgggctcc gcccggatgc ggccggacag cagcacgatg tcgagcgtgc
      961 cgtaagcgcc ataaaagagc actgcggcga gaagataaag tatcgagcca aatagcgcga
     1021 agagcagata ccgcagcgcg gcggcaattg tctccgcacg gccgtcaagc gagaccaacg
     1081 gcacagccgc gaaagtcagc aattccaagg ctacataaag gttgaagaga tcgccgccga
     1141 taaagaccgc attgagtgcg ccccaaaccg ccggcagcaa tgtccagaac acaagcgggg
     1201 cgcgcctttc ggcctgccct gggctggtga actggcctcg tgcgaacagc ccgatgccgc
     1261 agaccagcag cgccgtcgcc acgagcattg ccgcggatag tccgtccgcc cgaaatgcca
     1321 cgccgagggg cgggtcccaa ttgccgacaa aatattgcag cacattgtga ctgcgccaga
     1381 cctcgatggc gatcgccaat gcgacggcga gcccggcggg catcaggatc aggacgacgc
     1441 gctcggcgtg ccgcccgccg agcaccagcg acaggagcac gcctgtgacc ggcagaacga
     1501 tggccaaaac gaggaggaac ccccctgccg ttgcggaatt cggcatcagg ggtgagctat
     1561 tcatccgacc gcaggttggc ccgcccggcc tcctgaaaca accgcagcag cagccccacc
     1621 gtcagcgccg tcgctgcgaa agcgacgacg ag
//
LOCUS       DASQCV010000592         1559 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1787917, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000592 DASQCV010000000
VERSION     DASQCV010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1787917"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..546
                     /locus_tag="VEQ16_09090"
     CDS             <1..546
                     /locus_tag="VEQ16_09090"
                     /inference="COORDINATES: protein motif:HMM:NF017519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiX/YebB-like N1pC/P60 family cysteine
                     hydrolase"
                     /protein_id="HYP64031.1"
                     /translation="SDQALAILLATRSLYTHAGIVAVAPDGAVSVIQAGQVVVKTPLA
                     DWIRQSYGERLTIMRFPGLSPAAGAQVVAAAEALEGRPYDYFFRLSQDEIYCSSLVYD
                     AFLNGPHIQLGHLQPIGSLGLDNFAVRKIIRARWQFDPDCRAQGAKDFAACYAIIQRR
                     LIITPVSLARDARLVTLYNNY"
     gene            complement(540..746)
                     /locus_tag="VEQ16_09095"
     CDS             complement(540..746)
                     /locus_tag="VEQ16_09095"
                     /inference="COORDINATES: protein motif:HMM:NF012621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-associated domain-containing
                     protein"
                     /protein_id="HYP64032.1"
                     /translation="MSTTQTQIFLVPDMDCQSCIRAITDAVRRLDSSAQITAELAAKR
                     VQISGTGDFAAAIESAGFTASPAQ"
     gene            839..>1559
                     /locus_tag="VEQ16_09100"
     CDS             839..>1559
                     /locus_tag="VEQ16_09100"
                     /inference="COORDINATES: protein motif:HMM:NF012621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HYP64033.1"
                     /translation="MDQISSPPQDIDLTITGMSCASCVARVEKLLGRVPGVTSVSVNL
                     ATGQAHVAAASGVSVAALAEAAQKGGYGATLVSEAALDEGRAELWRLVAGFALGVPVF
                     LSMVWPVPPVVLLVLASIVQFWLGARFYKGGLAALRAGGGNMDVLVALGTSAAWGLSL
                     WNVYAGGPLYFESSVAIVLLVRLGKFLEGRARRDAAGAIAALHRLRPDVAHLASGGDV
                     PVAKLAPGDEIELRPGERVPVD"
BASE COUNT          232 a          429 c          568 g          330 t
ORIGIN      
        1 tccgaccagg cgctggcgat attgctcgcc acacgcagcc tttataccca tgcgggcatt
       61 gtcgcggtgg cgccggatgg ggcggtgtcc gttatccagg cagggcaggt ggtggtgaaa
      121 acgccgctcg cggactggat acggcagagc tatggcgagc ggctgaccat catgcggttt
      181 ccgggcctct cgccggcggc gggagcgcag gtggtggcag cggcggaagc gctggagggg
      241 cggccttatg attatttctt ccgcctgtct caggatgaaa tttattgttc gtcgctggtc
      301 tatgacgcgt tcctcaatgg gccgcatatc cagctggggc atttgcagcc catcggctcg
      361 ctggggctgg ataatttcgc cgtgaggaaa atcatccggg cgcgctggca gtttgatccg
      421 gattgccggg cgcagggggc gaaggatttt gccgcctgct atgccatcat ccagcgccgg
      481 ctcatcatca cgccggtgag tctggcgcgg gatgcaaggc tggtgacgct ctacaataat
      541 tactgagcgg ggctggcggt aaagccggcg ctctcgatgg cagcggcgaa atcgcccgtg
      601 ccgctgatct gcacgcgttt ggcggcgagt tcggccgtga tctgcgcgga ggaatccagc
      661 ctgcgcaccg cgtccgtgat ggcgcggatg caggattggc aatccatgtc cgggacgagg
      721 aagatctggg tttgcgtcgt gctcatgaga ggctcctttg gtacgcaagt agggattgcc
      781 cccatgggaa ggtcaacccg ccttgacctt cccatgatgg gatacctatc taacggccat
      841 ggaccagata agttcccctc cgcaagacat cgatctcacc attaccggta tgagctgcgc
      901 ctcctgcgtg gcgcgggttg aaaaactgct tggccgcgtg ccgggggtga cgagcgtgtc
      961 agtgaatctc gccaccgggc aggcacatgt ggcggccgct tccggggtga gcgtggcggc
     1021 tttggccgag gcggcgcaga aaggcggcta cggtgccact ctggtctcgg aggcggcgct
     1081 ggacgagggg agagccgagc tttggcgcct ggttgccgga tttgcgctgg gtgtgccggt
     1141 gtttttgtcc atggtctggc cggttccgcc cgtggtgctg ctggtgctgg cgagcatcgt
     1201 gcaattctgg ctcggggcgc gtttctataa gggcgggctg gcggccttgc gcgctggcgg
     1261 cggcaatatg gatgtgctgg tggcgcttgg caccagcgct gcctggggcc tttccttgtg
     1321 gaatgtgtat gccggagggc cgctttattt cgaatcctcc gtggccatcg tcctgcttgt
     1381 gcggctgggc aaatttttgg aaggcagggc acggcgtgat gcagccgggg cgattgccgc
     1441 cttgcaccgg ctgcgtcccg atgtggcgca tctggcgagc ggaggcgatg tgcctgtcgc
     1501 caagctggcg ccgggcgatg agatagagct gcgccccggt gagcgcgtgc cggtggatg
//
LOCUS       DASQCV010000593         2860 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3113063, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000593 DASQCV010000000
VERSION     DASQCV010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2860
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3113063"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1888
                     /locus_tag="VEQ16_09105"
     CDS             <1..1888
                     /locus_tag="VEQ16_09105"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF012946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HYP64034.1"
                     /translation="SRASPDHLGQEMSCQPTAIPPANNVDIPALRERYRQERSIRINS
                     KGQEQYVRPKDDFADVYEGDPHMPTLPREPISEDLEVAILGGGWAGVLAGYALAKQGV
                     KGFRNIDHAGDFGGVWYWNRYPGLSCDNDAYCYLPLLEEMNFMPTKKFTDGFEIRNYC
                     QSIARKFGLYDNALFHTLITSMRWDESIKRYRLTTDRGDDIRARFVIMANGLLNIPKL
                     PGIPGIHEFKGKMFHTARWEYDYTGGTQENPVLDKLADKRVAIIGTGATSVQAVPFLG
                     KYAKELYVLQRTASTVDERKNTPTDPEWVKTLQSGWQRERQLNFHRFAMELPKAGETD
                     LICDIWTEINRNLSVGFNENGWPTSPEEYMAKREVMDYRVMERLRHRVESIVQDKDAA
                     EILKPWYRYLCKRPASNDEYYPTFNLPGVKVIDVSKTKGVERMTEKGFVANGVEYEVD
                     CVIFASGFEVSSDLDRRWGFDIFEGREGKSIYDLWATEYRTLHGMMTHYFPNLFFTGF
                     IQGGFASSTTEIFKLHGLHSAWVIAEAQKRGIITLEPSLAAQNKYVDFIRATAIDMSS
                     FVRECTPSYFNNEGQEIVNNKGEKKFRSYTGEPYGPGFYAFEAMLQEWRDRGDMEGLD
                     LGHA"
     gene            1912..2841
                     /locus_tag="VEQ16_09110"
     CDS             1912..2841
                     /locus_tag="VEQ16_09110"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP64035.1"
                     /translation="MSELRFDGRVAVITGAGRGLGRSYALLLASRGAKIVVNDLGVGL
                     KGDSATADAGPAQEVVAEIKAAGGEAVASTDSVTTHEGGQAIIDTALKHYGRVDILIH
                     NAGNVRRGALAALSYEDFELVLDVHLRGGFHVVRAAFPHMLAAKYGRIVLTSSINGLY
                     GNPNVVNYSVAKAGLIGLSNVAAIEGAAEGIKSNVIIPAAVTRMAEGLDTSQYPPMDP
                     ELVAPAVAWLAHESCSVTGEQLISVAGRVARAFAAETEGVYRPSWTIEDIAANIDAIR
                     DTSKQWLFAPAPSGHIDHLRRSFKMATEGAAKT"
BASE COUNT          590 a          908 c          867 g          495 t
ORIGIN      
        1 cagccgcgcc agcccggacc atttaggaca ggaaatgagc tgccagccga ccgcgatccc
       61 cccggccaat aatgtcgaca tcccggctct gcgggaaaga taccggcagg aacgcagcat
      121 ccgcatcaac agcaagggcc aggagcaata tgtccgcccg aaggatgatt tcgcggatgt
      181 gtatgagggc gatccccata tgccgacgct gccgcgcgag ccgatttccg aggacctcga
      241 agtggcgatt ctcggcggcg gctgggccgg tgtgctagcc ggctatgcgc tcgccaagca
      301 gggcgtgaag ggcttccgca atatcgacca tgccggcgac ttcggcggcg tatggtactg
      361 gaaccgctat cccggcctct cctgcgacaa cgacgcctat tgctacctgc cgctgctcga
      421 agaaatgaac ttcatgccga ccaagaagtt cacggacggc ttcgagattc gcaattactg
      481 ccagagcatc gcgcgcaaat tcgggctgta tgataacgct ttgttccaca cgctcatcac
      541 ctcgatgcgc tgggacgaga gcatcaagcg ctaccgcctg accacagacc gcggcgacga
      601 catccgtgcc cgcttcgtca tcatggctaa cgggctgttg aacattccca agctgcccgg
      661 cattcccggc atccacgagt tcaagggcaa gatgttccac accgcccgct gggaatatga
      721 ctataccggc ggcacgcagg aaaacccggt gctggacaag ctcgccgaca agcgcgtcgc
      781 catcatcggc accggcgcca cctcggtgca ggccgtgccg ttcctcggca aatatgccaa
      841 ggagctttac gtgctgcagc gtaccgcctc gacggtggat gagcgcaaga atacgccgac
      901 agaccccgaa tgggtgaaga ctctgcagtc cggctggcag cgcgagcgcc agctcaattt
      961 ccaccgcttc gcgatggagc tgccgaaagc aggcgaaacc gacctgatct gcgacatctg
     1021 gaccgagatc aaccgcaatc tctccgtcgg cttcaatgag aatggctggc cgacctcgcc
     1081 cgaggaatat atggccaagc gcgaggtgat ggattaccgt gtgatggagc gcctgcgcca
     1141 tcgggtcgaa tccatcgtgc aggacaagga cgcggcggaa attctgaagc cctggtaccg
     1201 ctatctctgc aagcgcccgg cctccaacga cgaatactac cccaccttca acctgcccgg
     1261 cgtgaaagtc atcgacgtat ccaagaccaa gggcgtcgag cgcatgaccg agaagggctt
     1321 cgtcgccaat ggcgtggaat atgaggtgga ttgcgtcatc ttcgcctcgg gcttcgaggt
     1381 gtcgagcgat ctcgaccgcc gctggggctt cgatattttc gaaggccgcg agggcaagtc
     1441 gatctatgat ctgtgggcga cggaataccg cacgctgcac ggcatgatga cgcattattt
     1501 cccgaacctg ttcttcaccg gcttcatcca gggcggcttc gcgtcttcca ccaccgagat
     1561 cttcaagctg catggcttgc actcggcctg ggtcatcgcc gaggcgcaga aacgcggcat
     1621 catcacgttg gagccaagcc tggcggcgca gaacaaatat gtggacttca tccgcgccac
     1681 ggccatcgac atgtcctcct tcgtgcgcga atgcacgccg agctatttca acaatgaagg
     1741 ccaggagatc gtgaataata agggcgagaa gaaattccgc tcttataccg gcgaacccta
     1801 cggccccggc ttctacgcct tcgaggcgat gctgcaggaa tggcgcgaca ggggcgatat
     1861 ggaagggctg gatctgggcc acgcgtaagc acctcaaggg ggagagcaaa aatgtccgag
     1921 ctgagattcg acggccgtgt agccgtgatc acaggtgctg ggcgcgggct ggggcgctcc
     1981 tacgcgctgc tgcttgcttc gcgcggggcg aaaattgtgg tcaatgatct cggcgtcggg
     2041 ctgaagggcg acagcgccac cgccgatgcc ggacccgcac aggaggtggt ggcggaaatc
     2101 aaagccgccg gcggcgaggc tgtggccagc acagattcag tgacgacaca cgaaggcggc
     2161 caggccatta tcgatacggc tctcaagcat tatggccgcg tcgatatcct catccacaat
     2221 gccggcaatg tgcgccgcgg cgcgctggcg gcgctgagct acgaggattt tgagttggtg
     2281 ctggatgtgc acctacgcgg cggcttccac gtggtgcgcg cggccttccc gcatatgctc
     2341 gcggccaaat atgggcgcat cgtgctcacc tcgtccatca acgggctcta cggcaacccc
     2401 aacgtggtga actactcggt cgccaaagct gggctcatcg ggctgtccaa tgtcgccgcc
     2461 atcgagggcg cggccgaagg catcaaatcc aacgtcatca tccccgctgc cgtcacgcgc
     2521 atggcggaag ggctggatac gagccaatac ccgccgatgg acccggagct ggtggcgccc
     2581 gccgtggcct ggctcgcgca tgaatcctgc tccgtcaccg gcgagcagct catctccgtc
     2641 gccggccgcg tcgcgcgcgc cttcgccgcc gagacggaag gcgtgtaccg cccatcctgg
     2701 accatcgagg acatcgccgc caatatcgac gccatccgcg atacatccaa gcaatggctg
     2761 ttcgcgccgg caccgtcagg ccatatcgac catctgcgcc gcagtttcaa aatggcgacc
     2821 gaaggcgcgg ccaaaacctg aaccggcccg ccgggcgccg
//
LOCUS       DASQCV010000594         2535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1456567, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000594 DASQCV010000000
VERSION     DASQCV010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2535
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1456567"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..872)
                     /locus_tag="VEQ16_09115"
     CDS             complement(<1..872)
                     /locus_tag="VEQ16_09115"
                     /inference="COORDINATES: protein motif:HMM:NF015652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHYT domain-containing protein"
                     /protein_id="HYP64036.1"
                     /translation="MKMQALIHGLDMWLLQFNLPLLGLAMLVCSAGSYIVAVLAARGL
                     ATRGSNRFFWLLLLVPNFGAGVWATQFIAMLAFAPGPALFYALDRTLLSILVAMLGAT
                     PPLALLLLRPRARSTPLLAGAGLGLAIGAMHFTGMSALRFCGTAGFDPLFAPLALVLG
                     AGFAALAVRMLVFPRGRPRIKQATLALMASVCSLHFTALLGKGIIISGGVPPAGAPGL
                     LKGNSPALAILVAAVSGIILFAAFLAAVVDRKIALMSQTQADTLNYFATHDELTRLPN
                     RRHMLQHLARLLRAP"
     gene            1106..2137
                     /locus_tag="VEQ16_09120"
     CDS             1106..2137
                     /locus_tag="VEQ16_09120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008621536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64037.1"
                     /translation="MYSESDIDAAVAAGALPAEAADKFRAFIATQRTAPAVDEEYVRL
                     LTGFNDIFVSIAIALVLGALAFSAGSVPVKCALVAVCSWGLAEFFTRKRRMALPSILL
                     LLTYAGGVAGLLLWGAGRISGVESLRDGVDNPMLALCLAGVAVLMALAAWLHWRRFHV
                     PITIAAGAGTVSLTLIAVLVAAIPGLQPHWPWLVFAAGCAIFALALRWDMTDLARTTR
                     RSDVAFWLHLLAAPMLVHPLFYLLGLLQGGAPGEGRAVLAILIYLALGFVALLVDRRA
                     LLVSALGYVMFALSSVLKASGVIGQDLAYTALVAGAALLLLSAFWHRARQIVLLAIPA
                     GLRQRLPSA"
     gene            complement(2393..>2535)
                     /locus_tag="VEQ16_09125"
     CDS             complement(2393..>2535)
                     /locus_tag="VEQ16_09125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Usg family protein"
                     /protein_id="HYP64038.1"
                     /translation="PKFPVLRKFLDFWSRNLDGKLHSVRVGSASLITPAEWRHGTLLT
                     LH"
BASE COUNT          435 a          734 c          909 g          457 t
ORIGIN      
        1 ggcgcgcgca gcaggcgggc caggtgctgc agcatatgcc ggcggttggg caggcgcgtc
       61 agctcgtcat gggtggcgaa ataattcagc gtatcggcct gggtctggct catcagggcg
      121 attttgcggt cgaccaccgc ggcaaggaag gcggcgaaca gaatgatgcc gctcacagcg
      181 gcgaccagga tggccaaggc gggcgaattg cccttgagca ggccaggcgc gccggctggc
      241 gggacgccgc cgctgatgat gatgcccttc cccagcaagg cggtgaaatg caggctgcag
      301 acggacgcca tgagcgccag cgtggcctgc ttgatgcgcg gacggccacg gggaaagacg
      361 agcatgcgca ccgcgagcgc ggcgaagccc gcgcccagca ccaaagcgag cggggcgaag
      421 agagggtcga acccagcggt gccgcagaag cgcagcgcgc tcatgccggt gaaatgcatg
      481 gcgccgatgg ccagccccag cccggcgccg gccaaaagcg gcgttgagcg ggcgcgcggg
      541 cgcagcaaaa gcagggccaa gggcggcgtg gcgccgagca tggcgacgag aatggagaga
      601 agcgtgcggt cgagcgcgta gaaaagcgcc ggcccgggcg cgaaggcgag catggcgatg
      661 aactgcgtcg cccagacgcc ggcgccgaaa ttgggcacaa gaaggagcag ccagaagaag
      721 cggttggacc cgcgcgtggc aagaccgcgg gcggcgagca cggcgacgat gtaggagccg
      781 gcgctgcaca cgagcatggc gaggcccaga agcggcaggt tgaattggag aagccacatg
      841 tccagcccgt gaatgagtgc ctgcatcttc atctaactat ggcttccggc tccgtagctt
      901 gcgtccccat cactcctcgt tccttggtct gtccgtttcc ctggtgtgtc cgtttatccg
      961 ccttttgctt cagcactttt tgtttgtggg ctgacttaat atggccatcc ttaagggatg
     1021 gtaacctgag gtggtagaca tctaactata tgcgaccata aagcgcaata ttccgtgttt
     1081 ccaaaaaaac ggctaggcag ggcgcatgta cagcgaatcc gacatcgacg ccgccgtcgc
     1141 ggcaggggca ctaccggccg aagcggcaga taaattccgc gccttcatcg ccacgcagag
     1201 aaccgcgccg gcggtggatg aagaatatgt ccgtctactg acgggattca atgatatttt
     1261 tgtctccatc gccattgccc tggtgctcgg ggcgctggcc ttcagcgccg ggtccgtgcc
     1321 ggtgaaatgc gcgctggtgg cggtgtgttc ctgggggctg gccgagttct tcacgcgcaa
     1381 gcggcgcatg gcattgccca gcattctgct cctgctcacc tatgccggcg gcgtggccgg
     1441 gctgctgctg tggggcgccg ggcggatcag cggcgtcgag tctctgcggg acggggtgga
     1501 caacccgatg ctggctttgt gcctggccgg ggtggcggtg ctgatggcgc tggcggcctg
     1561 gctgcattgg cggcgtttcc atgtgcccat caccatcgcc gccggtgccg ggacggtgtc
     1621 gctcaccctt atcgccgtgc tggtggcggc cataccgggg ctgcagccgc attggccctg
     1681 gctggtgttt gctgccggct gcgccatttt tgccctggcg ctgcgctggg acatgacgga
     1741 tctggcccgc accacaaggc gcagcgatgt cgccttctgg ctgcatctgc tcgccgcccc
     1801 gatgctggtg catccgctat tctatctgct cgggctgctg cagggcggcg cgccgggcga
     1861 ggggcgggcg gtgctcgcca ttctcatcta tctcgcgctc gggttcgtgg cgctgctggt
     1921 ggaccggagg gcgctgctgg tttcggcgct gggctatgtg atgttcgctc tgtccagcgt
     1981 gctgaaagcc tcgggcgtga tcggccagga tctggcctat acggctttgg tggcgggggc
     2041 ggcgctgctg ctgctttcgg ccttctggca tagggcacgg cagattgtgc ttctggccat
     2101 cccggccgga ttgcggcaga ggctgccctc cgcctgaatc cgcaaggaga tggtgttgag
     2161 catggccgcc agcatgagca agacgccgcg ataaatcgaa cgccggaaac ggactttacg
     2221 aggaagcgga ctttgcgagg aagcggactt tacgaggaaa gggactttgc gaggaagcgg
     2281 actttgcgcg ggctgttttc gggctgcccg cgtaaagtcc tacaaaaacc ttaattttac
     2341 gcaaagaaac cgccgcgtca tgggcgcggt ggtaagaggg cggccgacgt gttcagtgga
     2401 gggtcagcag cgtgccgtgg cgccattcgg ccggggtgat gaggctggcg ctgccgacgc
     2461 ggacggagtg cagcttgccg tcgagattgc gcgaccagaa atcgaggaac ttgcgcagga
     2521 ccgggaattt cggcg
//
LOCUS       DASQCV010000595         1542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_958829, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000595 DASQCV010000000
VERSION     DASQCV010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_958829"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1406)
                     /locus_tag="VEQ16_09130"
     CDS             complement(<1..1406)
                     /locus_tag="VEQ16_09130"
                     /EC_number="4.1.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020591407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050371 - tyrosine phenol-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006570 - tyrosine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine phenol-lyase"
                     /protein_id="HYP64039.1"
                     /translation="MLPHGGKDAATLAGLQPASLHPVPLPVRRSWAEPWKVKVVEPIK
                     MTSHAQRKRAIAAAGYNTFLLRSEDVYIDLLTDSGTSAMSDWQWAGMMLGDEAYAGSK
                     NFYHLEESVRRHYGYRYTVPTHQGRGAENLISRMLIKRGDFVPGNMYFTTTRLHQELA
                     GGTFVDVIIPEAHNPASEHPFKGNIDLAALDALIKKVGAKKIPYLTVGATVNMAGGQP
                     ISMANMRAVRKLTRRHGIRLILDATRAVENAWFIQQREKEFAKKSVAEILLEFCSFSD
                     GCTMSGKKDALVNIGGWLALNEKALYEEASNLVVVYEGLHTYGGMAGRDMEAMARGIV
                     ESVQDDHIRARIGQVEYLGGKLISWGIPIVRPIGGHAVYLDARAFYPHLLQDVFPAQT
                     LAAELYEDSGVRAMERGIVSAGRDPRTGHHRYPKLELVRLTIPRRVYTQAHMDVTAES
                     VLAVWKQRSKSRGLKMVH"
BASE COUNT          277 a          482 c          453 g          330 t
ORIGIN      
        1 tcgtgcacca tcttcaggcc ccgcgacttg ctgcgttgct tccataccgc cagcaccgat
       61 tcggccgtga cgtccatgtg ggcctgcgta tagacgcggc gcggaatggt gaggcggacc
      121 aattcgagct tgggatagcg atggtggccg gtcctgggat cgcggccggc cgaaacaatc
      181 ccccgttcca tcgctctcac acccgagtcc tcataaagct ccgccgccaa tgtttgcgcg
      241 ggaaacacgt cttgtaagag atgcgggtag aaggcgcggg catcgagata caccgcatgg
      301 ccgccgatgg gccgcacaat tggaataccc cagctaatga gcttgccgcc cagatactcg
      361 acctgcccga tgcgggcgcg aatgtggtcg tcctgcacgc tctcgacaat gccgcgcgcc
      421 atcgcttcca tgtcgcgccc ggccatgccg ccgtaagtgt gcagaccttc gtacaccacg
      481 acgaggttgc tggcttcctc gtaaagcgct ttctcgttta gcgccagcca gccgcctatg
      541 ttgaccagag cgtccttctt tccgctcatg gtgcagccgt ccgagaagga gcagaattcc
      601 aacaaaattt ccgccacgga ctttttggca aattccttct cgcgttgctg aatgaaccag
      661 gcgttttcga cggcgcgtgt agcgtccagg attaggcgga tcccgtgccg ccgtgtaagt
      721 ttccgcacgg cgcgcatgtt cgccatcgag atcggctggc cgcctgccat gtttaccgtc
      781 gcgccaacgg tcagataggg aatcttcttc gcgcccactt tcttaatcag agcatccagc
      841 gcggcgaggt caatgttacc cttaaacgga tgctcgctgg cggggttgtg cgcctcgggg
      901 atgatcacgt ccacgaaggt gccgcccgcc agttcctggt gcagccgggt ggtggtgaaa
      961 tacatgttcc cgggcacaaa atctccgcgc ttgatgagca ttcgtgaaat aagattctcc
     1021 gcgccgcgac cctggtgcgt cggcaccgtg tagcggtagc cgtagtggcg gcggacgctt
     1081 tcttccaaat ggtagaagtt tttgctgcct gcgtatgcct cgtcgccgag catcatcccc
     1141 gcccattgcc aatcgctcat ggcgctggtg ccgctgtcgg taagcaggtc aatatacaca
     1201 tcctccgatc gtagcagaaa ggtattgtaa cccgcggcag caatggcccg cttgcgctgg
     1261 gcgtgcgaag tcatcttgat cggctcgacg accttgacct tccacggctc cgcccacgag
     1321 cggcgcaccg gaagcggcac cgggtgcaga gaggcaggct gcaaccctgc cagcgtggcg
     1381 gcatccttgc cgccatgggg cagcataacc aggccgttgc catacccgcc atcggcgggt
     1441 tggccaccag tccccgcgtt gctgcctgga ggcgttcggg atctagccag tattctcttt
     1501 agtctgttca taaatctttg tcggtgttga gctgtcagat gc
//
LOCUS       DASQCV010000596         6498 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_790833, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000596 DASQCV010000000
VERSION     DASQCV010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6498
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_790833"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..1296
                     /locus_tag="VEQ16_09135"
     CDS             16..1296
                     /locus_tag="VEQ16_09135"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007004167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HYP64040.1"
                     /translation="MTLRVGIAGLGTVGGGVVKLLAAQAEIITARAGQKIVVTAVSAR
                     SRRERDFSVEGLHWHDDPVALATDANVDVVVELIGGSDGPAKKLAEAAIAAGKPFVTA
                     NKALLAMHGAALAAAAEAKGVAIAYEAAVAGGIPVIKVLREGLAGNNVSRVAGILNGT
                     CNYILTTMREEGRDFSEVLADAQKLGYAEADPSFDVDGIDAAHKLAILAGLAFGARID
                     FASLHIEGIRRISDLDISFAQELGYRIKLLGIAERTDAGISLRVHPAMVPESRPLATV
                     DGVFNAVQLEGDYSGSVFLRGRGAGEGPTASAVVADLIDIARGIKVPVWGQKAASLAP
                     AILQPMAAHEGAYFLRLMVVDQPGVLADVTAILRDHGISLESMLQHGRKPGEAVPIVL
                     VTHETREEAVSAALAGIATLPSVLEAPALIRIEP"
     gene            1314..2300
                     /gene="glpX"
                     /locus_tag="VEQ16_09140"
     CDS             1314..2300
                     /gene="glpX"
                     /locus_tag="VEQ16_09140"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HYP64041.1"
                     /translation="MSQTPRLGEVSDRNLALELVRVTEAAAIAAARWIGRGKKNDADG
                     AAVEAMRKAFDTVAIDGTVVIGEGEMDEAPMLYIGEKVGCGGPEMDIAVDPLEGTSIT
                     AKGGPNAIATVALAEKGNFLHAPDIYMEKIAVGGGLPEGVVNLDAPVKENLKNLALAK
                     GVEISDLMVCMLDRDRHAAKIAQIREAGARIMLIGDGDVAGVIAASQPNTGVDMYLGS
                     GGAPEGVLAAAALRCIGGQMQGQLMFEDDAQIARALTMGITDPNRIYSIEEMAKGDVM
                     FAATGVTTGAMLNGVRRVGLGAVTHSIVMRSKSGTVRYIEGHHNFAKKHFVA"
     gene            complement(2303..3574)
                     /locus_tag="VEQ16_09145"
     CDS             complement(2303..3574)
                     /locus_tag="VEQ16_09145"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HYP64042.1"
                     /translation="MMTSYFALSRRRFLGAAGFAGMAPLLPGCATPTRLQAVPVTQTT
                     EATVLGLPNERFFPLHGAQGLDAEFYAALQRRNQTLGLELDALPPPIELLAVSGGGED
                     GAFGAGLLCGWTQAGTRPVFELVTGVSTGALTAPFAFLGSAYDPQLRHIYTGIKPSNV
                     LEQRNIISGAIFSDALANNAPLFGLISTYMNTDMQAAIAQAYQQGRLLLIGTTNLDAQ
                     VPVIWNIGAMAASNNPRALDTIRRLLLASAAIPGAFPPTMIDVTVDGVPYQEMHVDGG
                     AFAQAFLYPPSVTVNRRARIKQGKPVVGIDAYIIRNARLDPDWASVRRRTLSIAGRAI
                     GTLLAANGANDVLRLYYLTKHDDVDYNLAYIGADFTEEIPTPFDPGYMNDLFNYGYQH
                     AVHGYNWAKQPPAAWIGLQTSSAQNSARAIG"
     gene            4009..6333
                     /locus_tag="VEQ16_09150"
     CDS             4009..6333
                     /locus_tag="VEQ16_09150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64043.1"
                     /translation="MRVRSTSALLAAAILTFGLCLPRAMAQQEASWPTIVKENGATAT
                     IYEPQPTSWPDRTRLYATAAVIIAKPGQPNIAGTVDIVADTSTDLAGRWVTVSHINVL
                     ATHFPMLDTDQAAKLQARITAYTANISGRNIPLDTLLLALNQAPVQTQPVATENTPPV
                     IFHSNSPAILVVTDGPPVMSPLKGTGLSFAVNTNWNLFEQSATGEWFLLDGHDWLSAP
                     AFTGPYQPAGALPADFSKLPNDASFADVKKYVPNGPAPAAPPTVFVSTKPAQIIVTDG
                     APKLAPVAGAPLQYVSNSDAEVIFDPASKDYFVLFSGRWFSAPGLEGPWAYATPNLPA
                     SFALIPPGGPHGALLASVPGTAEAQEALITAQIPVQTSLPVTSTATVTYAGSPNFVPI
                     AGTGMNYAVNTAAQVIEVNGVYYDCHDGAWYVAHSPTGPWVLATSVPQVIYTIPPSSP
                     IYPVTYVHVYAATPSSVLVGYTAGYTMGMITAAGVIVYGTGYYYPPVVIAGPIPVYYP
                     YPYTYAGGVRYVSATGGWATGGAVYGPYGGVAARSYYNPATGAYAHGSAVWGPNGGNA
                     YGSFSNPTTGRYGSTSQSWTPYGRSGASTVTGPNGTVNTRSGSNYNGSAGGFAASNGA
                     EGAGMHNAVTGSNSGAVKTANGDVYAGHNGNVYQHNSSGWSEYNNGSFKPVTPPQAPK
                     PTGLEGTQNQPRPQGSYNGGTGFAGHSGAGNMGNSADFNQLNHDMQARQGGAQRQREF
                     GGGGFGGGFGGGGFGARGAATGFGGGGFGGHSRH"
     gene            complement(6395..>6498)
                     /locus_tag="VEQ16_09155"
     CDS             complement(6395..>6498)
                     /locus_tag="VEQ16_09155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011253110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HYP64044.1"
                     /translation="LVLVGQRRSLLDYLKRKNAKRYQDLIGRLNLRR"
BASE COUNT         1172 a         1922 c         2238 g         1166 t
ORIGIN      
        1 ggcggaggag cagaaatgac gctgcgcgtt gggattgccg ggctcgggac cgtcggcggc
       61 ggggtggtga aattgctggc ggcgcaggcg gagatcatca ccgcgcgggc cgggcagaag
      121 attgtggtga ccgccgtgtc cgcgcgcagc cggcgggagc gggatttttc cgtcgagggg
      181 ctgcattggc atgacgatcc ggtggctttg gccacagatg cgaatgtgga tgtggtggtg
      241 gagctgatcg gtggctcgga cgggccggcg aagaagctgg cggaggcggc gattgcggca
      301 ggcaagccgt ttgtgaccgc gaacaaggcg ctgctcgcca tgcatggggc ggcgcttgcg
      361 gcggcggcgg aggcgaaggg tgtggccatc gcctatgaag ccgcggtggc gggcgggatt
      421 cccgtgatca aggttctgcg cgaggggctg gcaggaaaca atgtgagccg cgtcgcgggc
      481 attctcaacg gcacctgcaa ttacatcctc accaccatgc gcgaggaggg ccgggatttt
      541 tccgaagtgc tcgccgatgc gcagaagctc ggttatgccg aggccgaccc gagcttcgat
      601 gtggatggga tcgatgcggc acataagctc gccattctgg ccgggctggc cttcggggcg
      661 cgcattgatt ttgcctccct gcatatcgag ggcatccggc gcatttccga cctggatatc
      721 tctttcgccc aggagctggg ctaccggatc aagctgctgg gcattgccga gcggacggat
      781 gcggggattt ctctgcgcgt gcatccggcg atggtgccgg agagccgccc gctggcgacg
      841 gtggatggcg tgttcaatgc cgtgcagctg gagggggatt attcgggctc tgtgttcctg
      901 cgcgggcgcg gcgcgggcga gggcccgacc gcctcggccg tggtggcgga cctcatcgat
      961 atcgcgcggg gcatcaaggt gcctgtgtgg ggccagaagg ccgccagcct ggcgccggcc
     1021 atcttgcagc ccatggcggc gcatgagggg gcctatttcc tgcgcctgat ggttgtggac
     1081 cagccgggcg tgctggcgga tgtgaccgcg attttgcgcg accatggcat ctcgctggaa
     1141 tccatgctgc agcatgggcg caagcccggc gaggccgtgc cgattgtgct cgtgacgcat
     1201 gaaaccaggg aggaagcggt gagtgctgcc ctcgcgggca tcgccaccct gccctccgtg
     1261 ctcgaggccc ctgccctcat ccgtatcgaa ccgtaagaga aggaacctgc cccatgtccc
     1321 aaacgcctcg ccttggtgaa gtctctgacc gcaatctggc gcttgaactg gtgcgcgtga
     1381 ccgaagccgc cgccatcgcc gccgcgcgct ggattggccg cggcaagaag aacgatgccg
     1441 atggcgccgc cgtggaagcg atgcgcaagg cgttcgacac ggtggccatc gacggcacgg
     1501 tggtgatcgg cgagggcgaa atggatgagg cgccgatgct ctatatcggt gagaaggtgg
     1561 gctgtggcgg gccggagatg gatatcgccg tggacccgct ggaaggcacc tccatcaccg
     1621 ccaagggcgg tcccaacgcg attgctaccg tagcgctggc ggagaagggg aattttctcc
     1681 atgcgccgga tatctacatg gagaagatcg ccgtgggcgg cgggctgccg gaaggcgtgg
     1741 tgaatctcga tgcgccggtg aaggagaacc tcaaaaatct cgctctggcc aagggcgtgg
     1801 aaatctccga cctgatggtg tgcatgctgg accgcgaccg ccatgccgcg aagatcgcgc
     1861 aaatccgcga ggcgggggcg cgcatcatgc tgatcggcga tggcgacgtg gccggggtaa
     1921 ttgcggcctc gcaaccgaat accggcgtcg acatgtatct gggctcgggc ggcgcgccgg
     1981 aaggcgtgct ggcggcggcg gctttgcgct gcatcggcgg gcagatgcag gggcagctga
     2041 tgttcgagga tgacgcgcag attgcacgcg ctctgaccat ggggattacg gacccgaacc
     2101 ggatttattc aatcgaggaa atggccaagg gcgatgtgat gttcgcggcg acgggcgtga
     2161 ccacgggcgc gatgctgaat ggcgtgcggc gcgtggggct gggggcggtg acgcattcca
     2221 tcgtgatgcg cagcaagtcc gggacggtgc gctatatcga gggccaccat aatttcgcga
     2281 aaaagcattt tgtggcttaa acttatccga tcgcgcgcgc gctattctgg gcggaacttg
     2341 tctgcaggcc gatccacgcg gctggcggct gtttcgccca gttatagcca tgcacggcgt
     2401 gctggtagcc gtaattgaac aggtcgttca tatagccagg gtcgaacggc gtcgggattt
     2461 cctcagtgaa atccgcgcca atataggcga ggttgtagtc gacgtcatca tgtttcgtga
     2521 ggtaatagag ccgcaggacg tcgttggcgc cattcgcggc aagcaaggtg ccgatggcac
     2581 ggccggcaat gctgagcgtg cggcgccgga cagaagccca gtccgggtcg agccgggcat
     2641 tacggatgat ataggcatca atcccgacaa caggcttgcc ctgcttgatg cgcgcgcgcc
     2701 ggttgaccgt cactgaaggc ggatagagga aagcctgggc aaaagcgccg ccatccacat
     2761 gcatctcctg gtacggcacg ccatccacgg tcacatcgat catggtgggc ggaaaagcgc
     2821 cgggaatggc ggcggaggcc aggagcaagc ggcgaatggt atccagggcg cgcgggttat
     2881 tgctggcagc catggcgccg atgttccaga tgaccggtac ctgggcgtcc aggttcgttg
     2941 tgccgatgag cagcagcctc ccctgctgat aggcttgcgc gatcgccgcc tgcatgtccg
     3001 tgttcatgta ggtgctgatg aggccgaaca acggcgcatt attggcgagc gcatcgctga
     3061 agatggcgcc ggagatgata ttgcgttgct ccaggacgtt gcttggcttg atgcccgtat
     3121 agatatggcg cagttgcgga tcataggcgg agccgaggaa cgcgaacggg gcggtcaagg
     3181 ctccggtgct gacgccggtg accagctcaa agaccgggcg cgtgccggct tgggtccagc
     3241 cacacagcag cccggcgcca aaggcgccgt cttcgccgcc acccgacacg gccagcagct
     3301 cgatcggggg cggcagtgca tccagttcaa gcccaagcgt ctggttgcgg cgctgcagag
     3361 cggcataaaa ctccgcgtct aatccttgtg cgccgtggag tgggaagaag cgttcattgg
     3421 gcaagccgag aacggtggcc tccgtcgtct gtgtgaccgg cacggcctgc aaccgtgtcg
     3481 gtgtcgcaca accaggcagc agcggcgcca tgccggcaaa accggccgcg cccagaaaac
     3541 gccgccgcga aagcgcaaaa tatgatgtca tcatcgcccc ccgtccttgc tttgtatttc
     3601 cagtcacgca tgctgcggcg gtctgtgtaa ccggaccgcc agccctcttt gcccgagact
     3661 atacagacgc gcctgccgct aagtttgatc ggccggttga gcggactccc ggccaagtta
     3721 ctgcacggtc cgggaatccc acacaaaaca taggaacgat gcgccagagc acaagccagc
     3781 tgcaaaacga tggtgttgcg catgcgcggc ttaagtggct atgcggcccg gcaccacgct
     3841 gccctcccct tggacctttg gagcaagggc ggagcacctg cggcacccaa acagcggcgt
     3901 ggttttaacg agattttcgc gccggcggcc ttgtaatatg tccctgcccc gccaactccg
     3961 caaaatccgg cttctgccgg aaatgacggt tgcataacgg gggctgccat gcgcgttcgt
     4021 tcgacttccg ctttgctggc tgcagcgatt ttgacattcg ggttgtgctt gccacgggcc
     4081 atggcccagc aggaggcaag ctggccgacg attgtgaagg aaaacggcgc cacggccacg
     4141 atctatgagc cgcagccgac ctcctggcct gaccgcacca ggctctatgc caccgcggcc
     4201 gtcatcattg ccaagcccgg ccagcctaat attgccggca cggtggatat cgtggcggat
     4261 accagcacgg acctggcggg acgctgggtc acggtctcgc atatcaacgt gctggcgacg
     4321 catttcccca tgctggatac cgaccaggcg gcaaagctgc aggccaggat taccgcctat
     4381 acggcgaata taagcggccg gaacataccg ctggacacgc tgctgctggc gctcaatcag
     4441 gcgcctgtgc aaacccagcc tgtggcgacc gagaatacgc cgcctgtgat ctttcacagc
     4501 aattcacctg ccatactcgt ggtaacggat gggccgcctg tgatgtcgcc gctgaagggc
     4561 acggggttga gcttcgcggt gaatacgaat tggaacctgt tcgaacaaag cgcgacaggt
     4621 gagtggtttc tgctggacgg gcatgactgg ctgtccgccc ctgccttcac cgggccttac
     4681 cagccggccg gcgcgctgcc tgcggatttc agcaaattac ccaatgatgc gagcttcgcg
     4741 gatgtgaaga aatatgtgcc gaacgggccg gcgcctgccg cgccgcccac cgtgttcgtc
     4801 agcaccaagc cggcgcagat catcgttacc gatggcgcgc cgaagctggc acccgttgcc
     4861 ggcgcgccgc tgcaatatgt gagcaatagc gatgccgagg tgattttcga tccggcgagc
     4921 aaggattatt tcgtgctgtt ttccggccgc tggttctcgg cccctgggct ggagggcccc
     4981 tgggcctatg ctacgcccaa cctgccggcg agcttcgcgc tcatccctcc gggtgggccg
     5041 catggcgcgc ttctggccag cgtgccgggg acggccgagg cgcaggaggc gctcatcacg
     5101 gcgcagattc cggtgcagac gagcctgccc gtgaccagca cggcgactgt gacctatgcc
     5161 ggcagcccga atttcgtgcc gattgccggc accggcatga actatgcggt gaataccgcc
     5221 gcccaggtga tcgaggtgaa tggcgtctat tatgattgcc atgacggcgc ctggtatgtc
     5281 gcgcacagcc caaccggccc ctgggtactc gctaccagcg tgccgcaggt gatctatacc
     5341 atcccgccca gcagcccgat ctatcccgtg acctatgtgc atgtttatgc ggccacgccg
     5401 tcttccgttc tggtgggcta tacggcgggc tacacgatgg ggatgatcac cgcggccggg
     5461 gtgattgtct acggcacggg atattattat ccgccagtgg tgatcgccgg gccaattccg
     5521 gtttattacc cctaccctta cacctatgcg ggcggcgtcc gttatgtttc cgcaaccggc
     5581 ggctgggcaa cgggaggtgc tgtgtacggg ccctatggcg gcgtggcggc gcgctcttac
     5641 tacaacccgg cgaccggcgc ctatgcgcat ggcagcgcgg tatggggacc caatggcggc
     5701 aacgcctatg gcagtttcag caatcccacc accgggcgct atggcagcac ctcacaaagc
     5761 tggaccccct atgggcgttc cggcgccagc accgtcacgg gccccaatgg cacggtgaat
     5821 acgcgaagcg gcagcaatta taacggctcc gccggcggct ttgccgcgag caacggcgcc
     5881 gagggggccg ggatgcataa tgcggtgacc ggcagcaata gcggggctgt gaaaaccgcg
     5941 aatggcgacg tctatgccgg ccataacggc aatgtctatc agcataattc cagcggctgg
     6001 tcggaatata ataatggcag cttcaagccc gtcacgccgc cgcaggcgcc caagccaaca
     6061 ggtctggaag ggacgcagaa tcagccgcgg ccgcagggct catataatgg cggcacgggg
     6121 tttgccggcc attccggggc cggcaatatg ggaaacagcg ccgatttcaa ccagctgaac
     6181 catgacatgc aggcccgcca gggcggcgcg cagcggcagc gggaattcgg gggcgggggt
     6241 tttggcgggg gttttggcgg gggcgggttt ggcgccagag gcgcggcaac tggcttcggt
     6301 ggcggcggct tcggcggtca tagccgccat taggcggcgg ccgcgagcgg ccgccttccc
     6361 tttggggacg cgggggcaaa accccgcttc atgatcagcg gcgcaggttg aggcggccga
     6421 tgaggtcctg gtagcgcttg gcgttcttgc gcttcagata gtcgagcagc gagcggcgct
     6481 ggccgacgag gacgagca
//
LOCUS       DASQCV010000597         2778 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3278084, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000597 DASQCV010000000
VERSION     DASQCV010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2778
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3278084"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..813
                     /locus_tag="VEQ16_09160"
     CDS             <1..813
                     /locus_tag="VEQ16_09160"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP64045.1"
                     /translation="RRLIDQGYLVVSEFDDHPNFMEKRGYDVEQLITFRGVHAVQTST
                     LPLAEVLTERNPELAVFPNAVFELPAPVNFTNLDRLTFFFAALNRQADWAPYMQVLNE
                     IARVVGERLHFHVMFDQAFHDALETPHKSFEPLADYATYKNALGRAEISFMPLADTEF
                     NRAKSDLKFIEAGAARVIALASPVVYAGVIEDGKNGLLFRDPAELRVSLLRLLAYPEA
                     TRRMADAARAYVASRRMLAYQLDARLNWYRGLWARRDELNAALKARVPELFS"
     gene            810..>2778
                     /locus_tag="VEQ16_09165"
     CDS             810..>2778
                     /locus_tag="VEQ16_09165"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYP64046.1"
                     /translation="MTASGCKIAVTEHIEIEWLPRGKVPALCPNCGAQGDAEQILDID
                     YRPPVEHDDEHRFIMQICPNCSVRFVDNMKMMEFHSEQQVERGEDAFHVQLGAGLWPI
                     AGQIARLDRPRGARVLEIGGAYGFGLDFALRARGWSGEGYDPSPFATVGMRELDLPLR
                     QEYFTVRHLELGPWDVAIATELLEHVSYPAAFLLLMRRALGETGVLLLSTPNAERITP
                     DLPISSLLPLLSPGSHTVLQTSQSLEMALRAAGFAHMHIIEDGLSLIAYASAAPFALI
                     EDDAARRAMYRTYLVERAGRAAPRSDLRFGFAGRGIFEAVNDGDWDAADTAWAALLPA
                     ARERFGLDLETMTALPEGAAEASLAGLSRLMPLGLGMILFGRAMRLLQAGQSRPQVEP
                     ALRLAAEAIGTLLRALAQHSLQDALSADIARLLRAELLICAAAAGRAEVAAGLEALGD
                     EVTSWRGFIKLVNAGEITVAAMLKATLPDMPGSHLPAGLRRNALLCLANFHLAPGGGV
                     LQAMASAEALRAAGEDTDALYVTLFTRLVNAGHYGQARQIVPVVDPILLKLRPPFEAA
                     GRDALFSAGILFMQDQSELRRSVTSFARLRDGLVKATLPGAEADPLFWPALRGEIVAL
                     NQLNRGDEAMSLLYSFVDAYPGAPDDLREQLT"
BASE COUNT          411 a          912 c          934 g          521 t
ORIGIN      
        1 cgccgcctga tcgatcaggg ctatctggtc gtctcggaat tcgacgatca tccgaatttc
       61 atggaaaagc gcggctacga tgtcgagcag ctgatcacct tccgcggcgt gcatgcggtg
      121 cagacgagca ctctgccgct ggccgaggtg ctgacggagc gcaaccccga actggcggtt
      181 ttccccaacg cggttttcga attacccgcg ccggtgaatt tcaccaacct cgaccggctg
      241 accttcttct tcgcggcgct caaccgccag gcggactggg cgccttatat gcaggtgctc
      301 aacgagattg cgcgtgtggt cggcgagcgg ctgcattttc atgtgatgtt cgaccaggcg
      361 ttccatgacg cgctcgagac gccgcataag agtttcgagc cgctggccga ttacgccacc
      421 tataagaacg cgctcggccg ggcggagatc agcttcatgc cgctggcgga cactgagttc
      481 aaccgcgcca aatccgacct gaaattcatc gaggccgggg ccgcgcgcgt tatcgccctc
      541 gccagcccgg ttgtgtatgc gggcgtgatc gaggatggca agaacggcct gctcttccgc
      601 gatccggcgg aattgcgcgt gtccctgctg cggctgcttg cttaccccga ggccaccagg
      661 cgcatggccg atgcggcgcg cgcctatgtc gcgtcccggc gcatgctggc ctaccagctg
      721 gatgcgcggc tcaactggta tcgcggcctg tgggcgcggc gtgacgagct gaatgcggcc
      781 ctgaaggcgc gcgtgccaga gctgttttca tgacggcgtc cggctgcaag atcgccgtca
      841 ccgagcatat cgaaatcgag tggctgccgc gcggcaaggt gcccgccttg tgccccaatt
      901 gcggcgcgca gggcgacgcc gagcagattc tcgatatcga ttaccgcccg ccggtcgagc
      961 atgatgacga gcaccgtttc atcatgcaga tctgcccgaa ctgctccgtc cgcttcgtcg
     1021 acaacatgaa gatgatggaa tttcattccg agcagcaggt ggagcgcggt gaggatgcgt
     1081 tccatgtcca gctcggcgcc gggctttggc cgatcgccgg gcagatcgcc cggctggacc
     1141 ggccgcgcgg cgcgcgcgtg ctggaaatcg gcggcgccta cgggtttggg ctggatttcg
     1201 cgttgcgcgc gcggggctgg agcggcgagg ggtacgatcc ttcacccttc gctacggtgg
     1261 gcatgcgcga actcgacctg ccgctgcgcc aggaatattt cacggtccgg catcttgagc
     1321 ttggtccatg ggacgtggcc attgccacgg agctgcttga gcatgtctcc taccccgccg
     1381 cttttctgct cctgatgcgc cgggcgctgg gtgagacggg cgtactgctg ctttccacgc
     1441 ccaatgccga acgcataacg ccggatctgc ccatctcctc cctgctgccg ctgctctcgc
     1501 ccggctcgca taccgtgctg cagacgtcgc aaagcctgga gatggcgctg cgcgcggcgg
     1561 gctttgcgca tatgcatatc atcgaggacg ggctttcgct catcgcctat gcctcggcgg
     1621 cccctttcgc gctgatcgag gatgatgccg cgcggcgggc catgtaccgg acctatctgg
     1681 tggaacgtgc cgggcgcgcc gcccccagga gcgatttgcg cttcggcttc gccgggcgcg
     1741 gcattttcga ggcggtgaat gatggcgact gggacgccgc cgacaccgcc tgggcagcgc
     1801 tgctgcccgc cgcgcgggag cgctttgggt tggatctcga aaccatgacc gcgctgcccg
     1861 agggggcggc cgaggccagc ctggccgggc tcagccggct gatgccgctg gggctgggca
     1921 tgatcctgtt tggccgcgcg atgcgcctgc tccaggccgg gcagagccgc ccgcaggtgg
     1981 agccggccct gcgcctggcg gccgaggcca tcggcacgct gctgcgcgct ttggcccaac
     2041 attcgctgca ggacgcgctc tccgccgaca ttgcccggct gctgcgcgcc gagctgctca
     2101 tctgcgccgc tgccgccggc cgtgccgagg tggcggcggg gcttgaggcg ctgggcgacg
     2161 aggtgaccag ctggcgcggc ttcatcaagc tggtcaatgc cggcgaaatc accgttgccg
     2221 ccatgctgaa agccacgctg ccggacatgc ccggctcgca tctgcccgcc gggctgcggc
     2281 gcaacgccct gctatgtttg gcgaatttcc atcttgcgcc gggcggcggc gtgctgcagg
     2341 ccatggcctc tgcggaagcc ttgcgcgcag ctggcgaaga cacggatgcg ctttacgtca
     2401 cgctcttcac gcgcctggtc aatgccggcc attacgggca ggcgcgccag attgtaccgg
     2461 tggtggaccc gatcctgctc aagttgcgtc cgcctttcga agcggcgggg cgcgatgcgc
     2521 tcttttcggc cggcatcctg ttcatgcagg accagagcga gttgcggcgc agcgtcacca
     2581 gcttcgcgcg gttgcgcgat gggctggtga aagcaacatt gcccggcgct gaggccgatc
     2641 cgcttttctg gcccgccttg cgcggcgaaa tcgtggcgct gaaccagctc aaccgtggcg
     2701 atgaggccat gagcctgctg tacagcttcg ttgacgcgta cccaggcgcg ccggacgatc
     2761 tgcgcgagca gctcacaa
//
LOCUS       DASQCV010000598         2513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_790990, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000598 DASQCV010000000
VERSION     DASQCV010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_790990"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..262
                     /locus_tag="VEQ16_09170"
     CDS             <1..262
                     /locus_tag="VEQ16_09170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HYP64047.1"
                     /translation="AEEIGSFCELNYGVSFPMMSKETTKGPKAHPFFGWVVQEAGFFA
                     KPRWNFYKYLINRKGELENYFISTTSPSAKRFTNALELLFYS"
     gene            complement(253..678)
                     /locus_tag="VEQ16_09175"
     CDS             complement(253..678)
                     /locus_tag="VEQ16_09175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HYP64048.1"
                     /translation="MSPYPAYPHIGIGIILLRGRDVLLIRRGRPPGAGQWSLPGGKQE
                     LGETAEAAARRELLEETGLACSKLTMVAHADSITYDTTGQVEYHYTILDFAGRYEGGE
                     PIPGDDADACAWASPEELAGYNLWSEILRVIEVARRAQL"
     gene            complement(678..>2513)
                     /gene="recG"
                     /locus_tag="VEQ16_09180"
     CDS             complement(678..>2513)
                     /gene="recG"
                     /locus_tag="VEQ16_09180"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HYP64049.1"
                     /translation="HEAPAKKTQPHRVVIGDGSGFAEIVLFHAARLTQFPVGAKLIVS
                     GKLDRFADRLVMAHPDYVANALRDEEFPWIEPVWPLTAGIVPRVMRRAALGALSALPD
                     FPEWQDASVLRSRGWPGFGEALHALHAPQEVPSQKPYERLAYDELLARQISFAIVRGL
                     RRRRAGRALKGAGRLRAVALKRFGFAPTAGQLQALADIDADMAAPHQMLRLLQGDVGS
                     GKTLVALLACLRAVEAGAQAAILAPTEVLARQHFATFSRLSPVPVALLTGNVKGTERR
                     RILSGLKDGSLPIVIGTHAIFQKHVEFADLGLAVIDEQHRFGVDQRLALGKKGAATDM
                     LVMTATPIPRTLLLTHWAEMDVSRIMEKPQGRERITTTMHSLSELEKVEEAIARMIAA
                     GGRVYWVCPLVKESELIDLTATEVRFARLRQRFGEAAVLAHGKMEPAQRDAALADFAQ
                     GRAKILVATTVVEVGVDVPEANVMVIEHAERFGLAQLHQLRGRVGRGSAKSFCLLLHD
                     DKLGQAARTRLSLLRDTDDGFLIADEDFKLRGAGDYLGTKQSGLPGYRLADPEKHETL
                     LNMARQDAVLLLQRDPRLESERGQAIKWLLNLFDQREAIETVRAG"
BASE COUNT          459 a          864 c          760 g          430 t
ORIGIN      
        1 ggcggaggag atcggcagtt tctgcgagct gaattacggc gtctcttttc cgatgatgag
       61 caaggaaacg acgaaaggcc cgaaggcgca tcccttcttc ggctgggtgg tgcaggaggc
      121 ggggtttttc gccaagccgc gctggaattt ctataaatac ctcatcaacc gcaaaggcga
      181 gctggagaat tatttcatct ccaccaccag cccgtcggct aaacgtttca caaacgcgct
      241 ggagctgctg ttttatagtt gagcgcggcg cgccacctcg atgacgcgca atatttcgct
      301 ccacagatta taaccggcca gctcttcggg gctggcccag gcgcaagcat cggcgtcatc
      361 gccggggatg ggctcgccgc cctcatagcg gccggcgaaa tcgaggatgg tatagtgata
      421 ttccacttgg ccggtggtgt cgtaggtgat ggaatcggca tgggcgacca tggtgagctt
      481 gctgcaggca agccccgttt cctccagcag ttcccgccgc gccgccgctt ccgccgtttc
      541 acccaactcc tgtttgccgc cgggcaggga ccattgcccg gcccccggcg gccggccgcg
      601 gcggatgagc agcacgtcgc ggccgcggag cagaatgatg ccgatgccga tatgcgggta
      661 agcagggtag ggggacatta tccggctctc acagtttcaa tcgcctcgcg ctggtcgaac
      721 agattgagca gccattttat cgcctgcccg cgctcgctct ccagtctcgg gtcgcgttgc
      781 agcaacagca ccgcatcctg ccgcgccatg ttcagcagcg tctcgtgctt ttccgggtcc
      841 gccaggcggt agccgggcag gccggattgc ttcgtgccca gataatcccc ggcgccgcgc
      901 agcttgaagt cttcgtccgc aatcaaaaac ccatcatccg tgtcgcgcag cagcgagagc
      961 cgcgtgcgcg cggcctggcc gagtttgtca tcatgcagga gcaggcagaa acttttggca
     1021 gagccgcgcc ccacgcggcc gcgcagctga tgcagttgtg ccaggccaaa ccgctcggca
     1081 tgctcgatca ccatcacatt cgcttccggc acatccacgc caacctccac cacagtggtg
     1141 gcgacgagaa ttttggcgcg cccttgcgcg aaatccgcca gtgccgcgtc gcgctgcgcc
     1201 ggctccatct tgccgtgcgc cagcacggcc gcttcgccaa aacgctggcg cagccgggcg
     1261 aaacgcactt ccgtcgcggt gaggtcgatg agctcggatt ccttcaccag cgggcacacc
     1321 cagtacacgc gcccgcccgc cgcgatcatg cgcgcgatcg cctcctcaac cttttccagc
     1381 tcggacaggc tgtgcatggt ggtggtaatt cgctcgcgcc cctgcggttt ttccatgatg
     1441 cgcgagacat ccatctccgc ccaatgtgtc agtaacaatg tgcgtggaat aggcgtcgcg
     1501 gtcatcacca gcatgtcggt ggcagcacct ttcttgccca gcgccaagcg ctgatcgacg
     1561 ccgaaacgat gctgctcatc aatgacggcg agaccgagat cggcgaactc cacatgtttc
     1621 tggaagatcg catgcgtgcc gatgacgatg ggcaggctgc catccttcag cccggataaa
     1681 atacggcggc gctccgtgcc tttcacattg cccgtgagca gcgctacagg caccggggag
     1741 aggcgcgaaa acgtggcaaa atgctgccgc gccagcacct cggtcggcgc caatatggcg
     1801 gcctgggcac cggcctccac ggcgcgcagg caggccagca gcgccaccaa agtcttgccg
     1861 gagccgacat cgccctgcag cagacgcagc atctggtgcg gggcggccat gtcggcgtcg
     1921 atgtccgcca gcgcctgcaa ctgccccgcc gtgggagcaa agccgaaccg cttcaacgcc
     1981 acggcgcgca ggcgtccggc acccttcagc gcgcgcccgg cgcggcggcg gcgcaaaccg
     2041 cgcacgatgg caaaactgat ctgccgcgcc agcaactcgt cataggccag ccgctcgtaa
     2101 ggtttttgcg acggcacctc ctggggcgca tgcagcgcat gcaacgcctc accaaagccc
     2161 ggccagccgc gcgagcgcag cacgctggca tcctgccatt ccgggaaatc cggcagcgcg
     2221 gacaatgccc ccagggccgc ccggcgcatc acccgcggca caatccccgc cgtcagcggc
     2281 cagaccggct caatccacgg aaactcctcg tcccgcagcg cattggcgac ataatctggg
     2341 tgcgccatca ccagccggtc ggcaaaccgg tccagcttgc cggagacaat gagcttcgcc
     2401 ccgaccggaa actgcgtcag ccgcgccgca tggaacagca cgatctcggc gaacccgctg
     2461 ccatcgccga tcaccacccg gtgcggctgc gtcttcttgg ccggcgcctc gtg
//
LOCUS       DASQCV010000599         4626 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2947513, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000599 DASQCV010000000
VERSION     DASQCV010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4626
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2947513"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..475
                     /locus_tag="VEQ16_09185"
     CDS             149..475
                     /locus_tag="VEQ16_09185"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYP64050.1"
                     /translation="MSELTVTFVEEDGTVKTLPAETGQSLMQVGKDAGVANILADCAG
                     SCACATCHVYVDEDWFEKIGKPDAIEVEMLDMVADVLKPTSRLSCQIKLTPELDGLKV
                     TVAPLG"
     gene            complement(538..1005)
                     /locus_tag="VEQ16_09190"
     CDS             complement(538..1005)
                     /locus_tag="VEQ16_09190"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYP64051.1"
                     /translation="MIRGIHHVAVHVHDLDRMIGFYKAAFGFELVGEPFAWKDEPVLD
                     KLIDVPGSAARGAMLRAGTCYVEMFQFSAPEPRPVSPLNPQDKGYTHFCVDVTDIAQE
                     FERLKGLGMRFGAPAPIDMGHVKSVYGRDPEGNVIELQQTAANCEFPLDKLRQ"
     gene            1204..2481
                     /locus_tag="VEQ16_09195"
     CDS             1204..2481
                     /locus_tag="VEQ16_09195"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYP64052.1"
                     /translation="MASKLITGALIWDAAGNPAFSGDVLIEGNRVRAVSRTPGQLAAE
                     GADIIDGTGLTLMPGMVEGHAHLSFEAVAATEDLITPPPEEQVFATARGAKALLDAGF
                     TSAYGASEAKLRLAVAVRNEVNAGRLPGPRIRAGSLEISVTGAMGDESRIHNPRPGGP
                     AMIVDGPEEMRKAVRLACREGCDNIKLDVSGDPFYPNTPGHTTPMSFEEIRMAVETAH
                     AYGRKVNAHTRSIEGSKNCIRAGVDGLFHCEYADEELLDMMETAKDRIFVVPTVSLFH
                     TIMHGEATSSGLTPEIGGYMGLQALLEESAKTHTALRKRGVRHLIGGDYGFAWSRQGT
                     NARDLKFFVDYYGYTAEGALTCATRFGGQAMRSEDDLGTISEGALADLLLIAGNPLED
                     VSIMTDASRLVMIMKDGEIHKNTTGIARNRAAA"
     gene            2497..3912
                     /locus_tag="VEQ16_09200"
     CDS             2497..3912
                     /locus_tag="VEQ16_09200"
                     /inference="COORDINATES: protein motif:HMM:NF013044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HYP64053.1"
                     /translation="MNEMSKPEAADQKFGEARCPAQSTQDIIAHDKVAAPDWVRSESY
                     QYMGSEDIDKQRYISADYAKAEYERLWTRTWQFACREEHIPEPGDYHVYDVGPYSFII
                     TRVAENDIRAYYNACLHRGTKLRASGTEGRATEFQCSFHGWSWNVDGTNKQVVCPWDF
                     PHVDRSKLNLPEARVETLGGFVWINMDKDAPSLADYLGAEALAHMQAWNLENRYIALH
                     VRKNIPANWKLTIEAFQEAYHVIITHPQVAVSNADANSQYDVYGEHVDRFISPLGVLS
                     PHLAGKYSEQDILDQFTVGDAGVLDGTKPSVGDGTARQVMADMFRGMFEKATNTDLSN
                     VSDSEILDCFSYTIFPNCFLFPGISLPMVYRFRPDPKNHRECIYEVMFLRPVGKDGVR
                     PPPAEPIELTLEQSFKEAEGMDPGFGAILDQDTDNLFLQQEGLEASAKAGITLGNYQE
                     IRIRHFEKAVDKYMAMPPLKP"
     gene            4010..>4626
                     /locus_tag="VEQ16_09205"
     CDS             4010..>4626
                     /locus_tag="VEQ16_09205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="indolepyruvate ferredoxin oxidoreductase family
                     protein"
                     /protein_id="HYP64054.1"
                     /translation="MTKTVVTLDDRYEQRSGQIFCSSMQALVRLPLDQKRRDVAEGWN
                     TAGYVSGYRGSPITTLDAQLWGAEKLLKAHDIHFEPGLNEELAATSLRGTQQLGWFGP
                     VKFQGVFAMWYAKGLGVDRACEALKLANFEGTAAQGGVLVVAGDDHAAKSSASAHQSE
                     HTLMVGFIPVLAPSTTAEILEYGQLGWEMSRFSGLYVGLKSVTDTL"
BASE COUNT          916 a         1369 c         1475 g          866 t
ORIGIN      
        1 cgctcttcct cgccagcgac cgcgccgcac agattaccgg cgcgattttg ccagtggatg
       61 gtggcatctc cgccggtgat tcggtaaacc acctggagaa gctgctgacg gcgcaggacg
      121 agtttttggc gaatgagggg acggtatgat gagtgagttg acggtcacgt ttgtcgaaga
      181 ggacggcacg gtgaagacgc tgcccgccga gacgggccag tctctgatgc aggtgggcaa
      241 ggatgccggg gtggccaata tcctggccga ctgcgccggt tcctgtgcct gtgccacctg
      301 ccatgtgtat gtggatgagg actggttcga gaagatcggt aagccggatg cgatcgaggt
      361 ggagatgctg gatatggtgg ccgatgtgct gaagccgacc agccggttat cgtgccagat
      421 caagctgacg cccgagttgg atgggttgaa ggtaactgtc gccccgctgg ggtgagacac
      481 cggtagcgca aaaaacgccc tccgggtgag cgcccggacg gcatctttgc cgtctggcta
      541 ttggcgcagt ttgtccagcg gaaactcgca attcgccgcc gtctgctgca gctcgatcac
      601 gttcccctcc gggtcgcgcc cataaaccga cttcacatgc cccatatcga tcggcgccgg
      661 ggccccgaac ctcatcccca accccttcag ccgctcaaac tcctgtgcga tatccgtcac
      721 atccacgcag aaatgcgtat aacccttgtc ctgcgggttg agcggcgaga cggggcgcgg
      781 ctccggcgcg gaaaactgga acatttccac atagcatgtc ccagcccgca gcatcgcccc
      841 acgggcggcg gagccgggca cgtcgatgag cttgtccagc accggctcgt ccttccaggc
      901 gaagggctcg cccaccagct cgaagccgaa tgccgccttg tagaagccga tcatcctgtc
      961 gagatcgtgc acatggaccg cgacatggtg gatgcctctg atcattttct ggttctcccc
     1021 ttctcgttca tgccccgtta agccagccgg aagggcggca caatggcgcg gcggggctgc
     1081 gcagggtcag acaaatcgcg ctgcatgaag ggacattcga agccggcgga gagccaaggt
     1141 aatctattgt ataatttgac agctgtgcgc ggcgccgtgc gcggcatgag aggaacagag
     1201 agaatggcca gcaagctgat taccggcgcc ctcatctggg atgcggcggg aaacccggct
     1261 ttttccggcg atgtgctgat cgagggcaac cgggtgcgtg ccgtctcccg cacgcccggc
     1321 cagttggccg ccgagggcgc ggacattatc gacggcaccg gcctgaccct gatgccgggc
     1381 atggtggagg gccatgccca tctctccttc gaggccgtgg cggccaccga ggacctcatc
     1441 accccaccgc ccgaggagca ggttttcgcc acggcgcgcg gggccaaggc gctgctcgat
     1501 gccgggttca ccagcgccta tggcgcctcg gaggccaaat tgcgcctggc cgtggcggtg
     1561 cgcaatgagg tgaatgccgg gcgcctgccg ggcccgcgca tccgcgccgg ctcgctggag
     1621 atttccgtga caggcgccat gggcgatgaa agccgcatcc acaatccgcg cccaggcgga
     1681 ccggccatga tcgtggatgg gccagaggag atgcgcaagg cggtgcggct ggcttgccgc
     1741 gaagggtgcg acaatatcaa actcgatgtc tcgggcgacc cgttctaccc caacacgccc
     1801 ggccatacga cgccaatgag tttcgaggaa atccgcatgg cggtggagac cgcccatgcc
     1861 tatgggcgca aggtgaatgc gcatacgcgc tccatcgagg gctcgaagaa ttgcatccgc
     1921 gccggggtgg atgggctgtt ccattgcgaa tatgccgatg aagaattgct cgacatgatg
     1981 gagacggcaa aggatcgtat cttcgtggtg cccaccgtga gcctgttcca taccatcatg
     2041 catggagagg cgacgtcctc gggcctcacg ccggagattg gcggctatat gggattgcag
     2101 gcactgctgg aggaatccgc gaagacgcat acggcgttgc gcaagcgcgg cgtgcggcat
     2161 ttgattggcg gggattatgg tttcgcctgg agccgccagg gcaccaatgc gcgcgatctg
     2221 aaattcttcg tcgattatta cggctacacg gcggaaggcg cgctcacctg cgccacgcgt
     2281 ttcggcggcc aggcgatgcg gagcgaggac gacctcggca ccatcagcga aggcgcgctg
     2341 gcggatttgc tgctgattgc cggcaacccg ctcgaggatg tcagcatcat gaccgacgcc
     2401 agccgcctcg tgatgatcat gaaggatggc gaaatccaca agaataccac cggcatcgcg
     2461 cgcaaccgcg ccgccgcctg agataggacg aacgacatga atgaaatgag caaacccgaa
     2521 gcggcggacc agaaattcgg cgaggcgcgc tgcccggccc agagcacgca ggacattatc
     2581 gcccacgaca aggtagcggc accggactgg gtgcggtccg aatcctacca atatatgggc
     2641 agcgaggata tcgacaagca gcgctatatc agcgcggatt atgccaaggc cgaatatgag
     2701 cggctctgga cccgcacctg gcaattcgcc tgccgcgagg agcatattcc ggagccgggc
     2761 gattatcatg tgtatgatgt cgggccttat agcttcatca tcacccgcgt cgcggaaaat
     2821 gatattcgcg cctattacaa tgcctgtttg catcgcggca cgaagctgcg cgcctcgggt
     2881 acggaagggc gcgccaccga attccagtgc agcttccatg gctggagctg gaatgtcgac
     2941 ggcaccaaca agcaggtcgt ctgcccgtgg gatttcccgc atgtggaccg gagcaagctc
     3001 aatttgccgg aagcgcgggt ggaaacgctt ggcggcttcg tctggatcaa tatggacaag
     3061 gatgcaccct ccctcgccga ttatctcggc gccgaggcgc tcgcccatat gcaggcctgg
     3121 aacctggaaa accgctatat cgccctgcat gtgaggaaaa acatcccggc caactggaag
     3181 ctcaccatcg aggccttcca ggaagcctat catgtcatca tcacgcatcc gcaggtcgcc
     3241 gtttccaatg ccgatgcgaa ttcgcaatat gatgtctatg gcgagcatgt ggaccgcttc
     3301 atctcgccgc tcggcgtgct gagtccgcat ctggcaggca aatatagcga gcaggatatt
     3361 ctcgaccagt tcaccgtcgg cgatgccggc gtgctggacg gcaccaaacc cagcgtgggc
     3421 gatggcacag cgcgccaggt gatggcggac atgttccgcg gcatgttcga gaaggcgacg
     3481 aataccgatc tttcaaatgt ttcggattcg gaaattctcg attgcttctc ctacaccatc
     3541 ttccccaatt gcttcctctt ccccggcatt tcgctcccca tggtgtatcg cttccggccg
     3601 gacccgaaga atcatcgcga atgcatctat gaggtgatgt tcctgcgccc ggtgggcaag
     3661 gatggcgtgc gcccgccacc ggccgagccc atcgagctga ctttagagca gagtttcaag
     3721 gaagccgaag gcatggaccc gggcttcggc gccattctgg accaggatac ggataatctc
     3781 ttcctgcagc aggaagggct ggaggcgagc gccaaagcgg gcatcacgct cggcaattac
     3841 caggaaatcc gcatccgcca ttttgaaaag gcggtggata aatatatggc gatgccaccg
     3901 ctcaagccct gatgggcggc gcagcgaggg gcaagtttct gcgccggacc ggacaacccg
     3961 tccggcgctg cacgctttat gatggcgggc aatcgctgga gatgatttcg tgaccaagac
     4021 cgtcgtgacg ctcgatgacc gttatgagca acgctccggt cagatttttt gctcctcgat
     4081 gcaggcgctg gtgcgtttgc cgctcgacca gaagcggcgc gatgtggcgg aggggtggaa
     4141 cacggccggt tatgtcagcg gctatcgcgg ctcgcccatc accactttgg atgcgcagct
     4201 ttggggtgcg gaaaagctgc tcaaggcgca tgatattcat tttgaaccag ggctgaacga
     4261 ggaactggcg gcgacctcac tacgcggcac acagcagctc ggctggttcg ggccggtgaa
     4321 attccagggc gtgtttgcca tgtggtacgc caaggggctc ggcgtggacc gtgcctgcga
     4381 ggcgctgaag ctggcgaatt tcgaaggcac ggcggcgcaa ggcggcgtgc tggtggtggc
     4441 gggcgatgac catgccgcca aatcctccgc ctcggcacat cagtccgagc atacgctcat
     4501 ggtgggattc attcccgtgt tggcaccctc caccacggcg gagattctcg aatatgggca
     4561 gctgggctgg gagatgtcgc gtttctccgg gctttatgtt gggttgaaat ccgtcaccga
     4621 tacgct
//
LOCUS       DASQCV010000600         1520 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_626821, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000600 DASQCV010000000
VERSION     DASQCV010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1520
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_626821"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1520
                     /locus_tag="VEQ16_09210"
     CDS             <1..>1520
                     /locus_tag="VEQ16_09210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HYP64055.1"
                     /translation="VWLFAAAGVGASALLAVTYGLLHGQWLQAVLAGITLAMATLPEE
                     FPLVLTIFLVLGAWRMSRQHVLARRAASIEALGTATLLCTDKTGTLTQNRMSVAQLAV
                     DGESLAVTEATGALPETFHELVEFSILASRPDPFDPMELAFHRLRQQGLANTEHLHAD
                     WMLAHDYPLRPELLAMSQAWRGSTSGVHVIATKGAPEAVADLCHMDEAGRETVRRGVA
                     EMAAAGLRVLGVAKGVYAKPGWPESQHDFDFTFLGLAGLADPLRHGVPEAVSACREAG
                     IGVAMITGDHPATALAIARQAGIEAAGRVLTGAEMAEMNDAALRTAVADTRVFARVMP
                     EQKLRLVQAFAANGEVVAMTGDGVNDAPSLKAAHIGVAMGGRGTDVAREAASLVLLDD
                     DFTSLVAAIRLGRRIDANLRKAFSYILAVHVPIAGMSLIPVLLGWPLLLGPVHVVFLE
                     MIIDPASSIVFEAEKADPAIMSRPPRQPGAPLFSMGLLAGGLSQGITVLAAALVVFL"
BASE COUNT          235 a          443 c          539 g          303 t
ORIGIN      
        1 gtctggctgt tcgcggcggc gggcgttggt gcctcggctc tcctggccgt tacctatggc
       61 ctgttgcacg gacaatggct gcaggccgtg ctggcgggca ttaccctggc catggccacg
      121 ctgccggagg agtttccgct cgtcctcacc atcttcctgg tactcggtgc ttggcgtatg
      181 tcgcgccagc atgtgctggc ccgccgagcg gcttccattg aagctttggg cacggccacg
      241 ctgctctgca ccgacaagac cggcacattg acgcagaacc gcatgtccgt ggcgcagctg
      301 gcagtggatg gtgagagcct agccgtgaca gaggcgaccg gcgcgctgcc ggaaacgttc
      361 cacgagctgg tagagttctc cattctggcc agccgcccag acccgtttga cccgatggaa
      421 ctggcgttcc atcggcttag gcagcaggga ctggccaata cggagcatct acacgccgat
      481 tggatgctgg cgcatgacta cccgctgcgg ccggagctgc tggcaatgtc ccaggcatgg
      541 cggggcagta ccagtggcgt gcatgttatc gcaaccaagg gcgcgccgga ggcggtcgcg
      601 gatttgtgcc atatggatga ggcggggcgc gagaccgtgc ggcgcggtgt ggcggaaatg
      661 gcagcggcgg gactgcgcgt gctgggcgtg gccaagggcg tttacgccaa gccgggctgg
      721 ccggaaagcc agcatgattt tgacttcacc tttcttggcc tggcgggtct agccgatccg
      781 ttgcgtcatg gcgtgccgga agccgtgtcc gcctgccggg aggcgggcat tggcgtggcc
      841 atgattacgg gagaccaccc ggctacggcg ctggccattg cccggcaggc gggcatagag
      901 gctgctggcc gggttttgac cggcgcggag atggcggaaa tgaacgatgc cgccctgcgc
      961 accgccgtgg cagacacgcg ggtgtttgcc cgcgtgatgc cggagcagaa attgcggctg
     1021 gtgcaggcct tcgctgccaa tggcgaggtg gtggccatga ctggcgatgg agtgaatgac
     1081 gcgccatcct tgaaagcagc ccatattggc gtggccatgg gcgggcgcgg cacggatgtg
     1141 gcacgcgaag cggcaagtct ggtgctgctg gatgatgact tcaccagcct ggttgcggcc
     1201 ataaggctgg ggcggcggat cgatgccaat ttgcgcaagg cgttctcata tatccttgcc
     1261 gtgcacgtac ccatcgccgg aatgtcattg attcccgtgc tgctcggctg gccgcttttg
     1321 ctggggccgg tgcatgtggt gtttctggaa atgatcatcg accctgcctc ttcaatcgtc
     1381 ttcgaggctg aaaaggcgga cccggcaatc atgtcccgcc cgccacggca gcctggcgcg
     1441 cctttgttca gtatgggtct cctcgccgga gggctgtcgc aggggattac ggtgctggcc
     1501 gcagcactgg tggtgtttct
//
LOCUS       DASQCV010000601         2746 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_791094, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000601 DASQCV010000000
VERSION     DASQCV010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2746
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_791094"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VEQ16_09215"
     CDS             <1..193
                     /locus_tag="VEQ16_09215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64056.1"
                     /translation="VLHYYFAGLAGAMDMREVSLLKLPGTDITAPVTFGQIAYTILNQ
                     TFTCLTISLSEDIFEDLPS"
     gene            190..525
                     /locus_tag="VEQ16_09220"
     CDS             190..525
                     /locus_tag="VEQ16_09220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019087090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF952 domain-containing protein"
                     /protein_id="HYP64057.1"
                     /translation="MMDKVAYKVLTAPQFAALQEGHFEGAPVDVADGYIHLSSAAQLT
                     DTVHKHFAGQDRLFVLAVDLTRLGGAVRWEISRGGQLFPHLYGQLNMENVLAHAPLRW
                     QGDEVAVPG"
     gene            643..1542
                     /locus_tag="VEQ16_09225"
     CDS             643..1542
                     /locus_tag="VEQ16_09225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogen peroxide-inducible genes activator"
                     /protein_id="HYP64058.1"
                     /translation="MTPLPTPQQLRYLVTLAETGHFSRAASACAVSQSTLSAGILALE
                     RQLDAQILDRSAAKHAVFTPLGLELVAKARTALAALTAVAEAADAARAPMSGPLRLGI
                     IPTVGPFLLPKLMPALRDGFPALKLFLREDQTDKLLDQLADGHLDVLLLAEPCACGGT
                     ESIPLARDEFLAALPPDHVLAARQRVTVADLAAEQFLLLEDGHCLRDQVLSVCNSVAG
                     REQRFAATSLHTLVQMVAGGLGVTLLPRLAVEAGLTSGTGVEIRRLEGAGGWRTLALA
                     WRQGSPKGAEYKALGPMVAQACG"
     gene            complement(1577..>2746)
                     /locus_tag="VEQ16_09230"
     CDS             complement(1577..>2746)
                     /locus_tag="VEQ16_09230"
                     /inference="COORDINATES: protein motif:HMM:NF024806.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP64059.1"
                     /translation="IALEPGFAEAHTNLGNALRELGQLDEAVAQHRRTLALAPDFAEA
                     HVNLGVTLGRTGQGDEAIACYRRAIALQAGLADAHHNLAQALLARGEMAEGWAEYEWR
                     WQTARMRGAGRDFPQPQWQGEEAPGRTLLIHAEQGLGDTLQFCRFASLAAALGLRVIL
                     EVQQPLVRLLQQLPDVAQVIERGDTLPPFDFHIPLLSLPRVFGTEMGTIPAAPAYLHA
                     DEAVTTHWRQRLDACTGRRKIGLAWAGSPHLLADRQRSIPPDQLAPLFGIAGLDFVRL
                     QQSGPAAPEAFGAIDVTAELTDLSITAGLIANLDLVISVDTAIAHLAAALGKPVWLMN
                     RFDSCWRWHGSGTESPWYPAMRIYRQPRPGDWQSVVTQIARDLEPGAPPLDPAGA"
BASE COUNT          496 a          885 c          870 g          495 t
ORIGIN      
        1 cgtgctgcat tattatttcg caggcctggc cggcgccatg gatatgcgcg aggtgtctct
       61 tctgaaattg ccgggcacag acatcaccgc ccccgtgacc ttcggccaga tcgcctatac
      121 catcctcaac cagacgttca cctgtctgac catcagcctg agcgaggata tattcgagga
      181 tttgccgtca tgatggacaa agttgcctac aaggtgctca ccgcgccgca atttgccgcg
      241 ctgcaggagg ggcacttcga aggcgcaccg gtggatgtcg cggatggcta tatccatctc
      301 tccagcgccg cacagctgac ggacactgtg cacaagcatt ttgccgggca agacaggctg
      361 tttgtgctgg ccgtcgatct cacccgcctg ggcggcgctg tgcgctggga gatctcacgg
      421 ggcgggcagc tctttccgca tctctatggc cagctcaata tggagaatgt tctggcccat
      481 gcgccgttgc gctggcaggg ggacgaagtc gctgtgccgg gctgaggctc cttgacccca
      541 cccgttaatc aaattaggcc gatttttgcc ccgcagagcc atttgccagt gcgagacaat
      601 cggcctagta aattattttc cgttctttga gctgatttac cgatgacgcc cctgcccacc
      661 ccgcaacagc tgcgctatct cgtcacgctg gccgaaaccg ggcatttttc ccgcgccgcc
      721 tcagcctgcg cggtgtccca gtcaacattg tctgccggca ttctggcgct ggaacggcag
      781 ctcgacgcgc agattctcga ccgctcggcc gccaaacacg ccgtgtttac gccgctggga
      841 ctggaactgg tcgccaaggc ccgcacagcg ttggcggcac tgaccgccgt ggcggaggca
      901 gccgatgcgg cgcgggcacc catgtccggc ccgctgcggc tcgggatcat cccgaccgtg
      961 gggccgttcc tgctgcccaa gctgatgcca gctctgcgcg acggatttcc ggccttgaaa
     1021 ctgtttttgc gagaggacca gacagacaag ctgctggacc agctcgccga cgggcatctg
     1081 gacgttctgc tgctggccga gccctgcgcc tgcggcggga ccgaaagcat tccattggcg
     1141 cgcgatgaat tcctggccgc cctgccgccg gaccatgtgc tggcagcgcg ccagcgcgtg
     1201 acggtagcgg atctcgcggc agaacaattt ttgctcctgg aggacggaca ttgcctacgc
     1261 gaccaggtgc tctcagtatg caacagcgtg gcggggcgcg agcagcgttt cgctgcgaca
     1321 tcgctacata cgctggtgca gatggtggcg ggtgggctcg gcgtgacact gctgccgcgc
     1381 ctagcggtgg aagccgggct gacttccggc actggcgtgg agatacgccg gctggagggg
     1441 gctggcggtt ggcgcacttt ggcgctggca tggcggcagg ggagtcccaa gggggcggaa
     1501 tataaggcgc tggggcctat ggtggcgcag gcttgtgggt agaagaggcg ctgtaaagta
     1561 atcggggtct ggggcctcag gccccagcgg ggtccagggg cggagcccct ggttctaaat
     1621 ccctcgcaat ttgcgtcacg accgactgcc aatcacccgg ccgcggctgc cggtaaatcc
     1681 gcatcgccgg ataccacggg ctttccgttc cgctgccatg ccaacgccag caggaatcaa
     1741 accggttcat cagccagacc ggcttgccga gcgcagccgc cagatgggcg atggcggtat
     1801 cgacggaaat caccaggtcg agattggcga tcagcccggc cgtgatcgac agatccgtca
     1861 attccgccgt cacgtcgatt gccccaaaag cctcaggcgc ggccgggccg gattgctgca
     1921 ggcggacaaa atcgagcccc gctatgccga aaagcggcgc caactggtcc ggcggaattg
     1981 aacgctggcg gtcagcgagc agatgcggcg agccggccca ggcgaggccg atttttctgc
     2041 gcccggtgca ggcatcaagg cgctggcgcc aatgcgttgt cactgcctca tcggcatgaa
     2101 gataggcggg ggctgcggga attgtgccca tctcagtccc gaaaacacgc ggcaggctca
     2161 gcagcgggat atggaaatca aacggcggca gcgtgtctcc acgttcaatc acctgcgcga
     2221 catccggcaa ttgctgcagc aggcggacga gcggctgttg cacttccaat atcacgcgca
     2281 ggcccagtgc ggcagcaagc gatgcgaagc ggcagaattg cagcgtatcg cccagcccct
     2341 gctcggcatg aatcagcaag gttcggccag gagcctcctc gccctgccat tgcggctggg
     2401 gaaaatcccg ccccgcgccg cgcatccggg ccgtctgcca gcgccattca tattccgccc
     2461 agccttccgc catctcgccc cgcgccagca gcgcctgggc aagattatga tgcgcatcgg
     2521 caaggccagc ctgcaacgca atcgcgcgcc gatagcaggc aatggcttca tccccctgtc
     2581 ctgtccggcc cagcgtgacg ccgagattca catgcgcctc agcaaaatcc ggcgccagag
     2641 cgagggtacg gcgatgctgc gcgacggctt catcgagctg ccccaactcg cgcagcgcat
     2701 tgccgagatt cgtatgcgcc tcggcaaaac ccggctccag cgcgat
//
LOCUS       DASQCV010000602         1964 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1623149, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000602 DASQCV010000000
VERSION     DASQCV010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1623149"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..170)
                     /locus_tag="VEQ16_09235"
     CDS             complement(<1..170)
                     /locus_tag="VEQ16_09235"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423101.1"
                     /note="Converts isocitrate to alpha ketoglutarate; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HYP64060.1"
                     /translation="MAKIKVKNPVVEMDGDEMTRIIWGFIKDKLILPYLDIDLKYFDL
                     GIEHRDATNDQVT"
     gene            361..1107
                     /locus_tag="VEQ16_09240"
     CDS             361..1107
                     /locus_tag="VEQ16_09240"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HYP64061.1"
                     /translation="MSGRIAAKIDWATDWDRDAALTTAKLLLEIKAVNFRPEEPYTLT
                     SGWKSPVYIDCRKIIYFPRARAKICDLAVEKIARHVGIEAIQAVAGGETAGIPFAAWI
                     AERMHAPMAYVRKQPKGFGRNALIEGDVPEGLNTLLVEDLTTDGGSKIQFCKALREAG
                     AICNHTFVVFFYGVFPGSFETLKSMDIALHHLCTWWDVLEAAKSHSYFSDAALSGVRK
                     FLENPMAWSAAHGGVATAEEALAHKMNKAK"
     gene            1227..>1964
                     /locus_tag="VEQ16_09245"
     CDS             1227..>1964
                     /locus_tag="VEQ16_09245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011388201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HYP64062.1"
                     /translation="MSFLSALTELLGEHGVLTAADDRAPFERDWRGLSQNPALAVALP
                     KTAEQVSDIVKLCAAQNIAIVPQGGNTGLVAGGVPIAGRDQLILSFNRMNQIRSIDLA
                     ANCAIAEAGVPLAQLQDAAEEAGRLFPVSFAADSSAQIGGAISTNAGGVQVLSYGNMR
                     AQVLGLEVVLADGAIWHGLNALPKDNTGYDLKQLFIGAEGTLGLITAACLRLHPAPRA
                     VATALVGLGSVEDAMGLFQAVRASAGPA"
BASE COUNT          355 a          626 c          601 g          382 t
ORIGIN      
        1 gtcacctggt cgttggtcgc gtcgcgatgc tcaatgccaa gatcgaaata tttaaggtcg
       61 atatccagat agggcagaat cagcttgtcc ttgatgaagc cccagataat ccgggtcatc
      121 tcatcgccat ccatttccac cacagggttc tttactttaa tcttggccat aaatctttct
      181 ccaggaaatg cgccacctcc atatcacccc cgcgccgcgg cacaagcctt acgtaatggt
      241 gatgctgatg cacgtcttag caaaaaaatg cgtggctttt gctggggtag gggcaggcct
      301 tgaccatgga cgccgcgccg ccgccgcgat attgcggggg ctgaattcag ggagtttgcg
      361 atgagcgggc ggattgcggc gaagatcgat tgggcgacgg attgggaccg ggacgcggcg
      421 ctgaccacgg cgaaattgct gctggagatc aaggccgtca atttccgccc cgaggagccc
      481 tacacgctca cctccggctg gaagtcgccg gtctatatcg attgccggaa aatcatttat
      541 tttccgcgcg cgcgggcaaa aatctgcgat ctggcggtgg agaagatcgc gcgtcatgtc
      601 ggcatcgagg ccatccaggc cgtggcgggc ggcgagacgg cgggcatccc cttcgccgcc
      661 tggattgccg agcgcatgca cgccccgatg gcctatgtgc gcaagcagcc gaaaggcttc
      721 ggccgtaacg cgctcatcga gggcgacgtg ccggaaggtc tgaacacgct gctggtggaa
      781 gacctcacaa ctgatggcgg atcgaaaatc cagttctgta aggcgctgcg cgaggccggg
      841 gccatctgca accacacctt cgtggtcttc ttctatggcg tgttccccgg ctcgttcgag
      901 acgttgaaga gcatggacat cgcgctgcac catctctgca cttggtggga cgtgttggag
      961 gcggccaagt cgcactccta tttctccgat gccgcccttt ccggcgtgcg caaatttctg
     1021 gaaaacccga tggcctggag cgccgcccat ggcggtgtgg cgacggccga ggaagcgctc
     1081 gctcataaga tgaacaaggc gaagtagacc cggcgcgttt ccagatgcgg ctggggcgcg
     1141 ggcctggccg ctttttcgcc tgagatataa ttccagcctc caagcgaccc ttgaccagcc
     1201 gggaggtcca gcaccaccta accggcatgt catttttatc cgccctcacc gagctgcttg
     1261 gcgaacacgg cgttcttacc gccgccgatg atcgcgcccc cttcgagcgc gactggcgcg
     1321 gcctctcgca aaatccggct ttggccgtgg cgctcccgaa aaccgccgag caggtctccg
     1381 acatcgtcaa attatgcgcg gcgcaaaaca tcgccattgt gccccagggc ggcaatactg
     1441 gtctcgtcgc cggcggtgtg cccatcgccg ggcgcgacca gctcatcctg agcttcaacc
     1501 gcatgaacca aatccggtcg atcgaccttg cggccaattg cgccattgcc gaagccggcg
     1561 ttccgctcgc ccagctgcag gacgccgccg aggaggccgg gcggctcttt cctgtctcct
     1621 tcgccgcgga cagttcggcc cagatcggcg gcgccatctc caccaatgct ggtggcgtgc
     1681 aggtactgtc ctacggcaat atgcgcgccc aggtgttggg gctggaggtg gtgctggccg
     1741 acggcgccat ctggcacggg ctcaacgctt tgcccaagga caacacaggc tacgacctca
     1801 agcagctctt catcggcgcc gaaggcacac tcggcctcat caccgccgct tgtctgcgcc
     1861 tgcatcccgc cccgcgcgcc gtggccactg ctctggtcgg gctgggctcg gtagaggacg
     1921 ccatgggcct gtttcaggcc gtgcgcgcca gcgcgggacc ggct
//
LOCUS       DASQCV010000603         2700 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1290757, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000603 DASQCV010000000
VERSION     DASQCV010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2700
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1290757"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..238)
                     /locus_tag="VEQ16_09250"
     CDS             complement(<1..238)
                     /locus_tag="VEQ16_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HYP64063.1"
                     /translation="MTDPTRDAAFSLLQAVLAKGAPLDAALDRLPKLEPRDRAAAHRL
                     AACVLRHAGSLDEILAPFLRRSPPEEVRQILRLGA"
     gene            complement(235..369)
                     /locus_tag="VEQ16_09255"
     CDS             complement(235..369)
                     /locus_tag="VEQ16_09255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64064.1"
                     /translation="MGTILPQCRKPQKLPGRMARRDDWVYGGVLSSFDHPPNQVARPL
                     "
     gene            762..959
                     /locus_tag="VEQ16_09260"
     CDS             762..959
                     /locus_tag="VEQ16_09260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64065.1"
                     /translation="MFSAAAGIRDYEFIYVSDSPEIARQLLKEAELCSMIYGLDLTLV
                     ILNSHAGCGGTHHPWRGRAAL"
     gene            956..1132
                     /locus_tag="VEQ16_09265"
     CDS             956..1132
                     /locus_tag="VEQ16_09265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64066.1"
                     /translation="MNSAMRALAETMLRACTEDGLWDRLAAGIKPPPERAEMVDGYLQ
                     VYRQELWSANLAAE"
     gene            complement(1298..1373)
                     /locus_tag="VEQ16_09270"
     tRNA            complement(1298..1373)
                     /locus_tag="VEQ16_09270"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1338..1340),aa:Ala,seq:cgc)
     gene            1523..1831
                     /locus_tag="VEQ16_09275"
     CDS             1523..1831
                     /locus_tag="VEQ16_09275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HYP64067.1"
                     /translation="MVGAIFRLTGEIIHLLILAIIAAAVMSILIAFGVANPRNQLVYS
                     VADFLNKITDPILRPIRNFVPLFGNVDISPVIAILLLQALQMVLADIEGRLIVAGYAF
                     "
     gene            1871..>2700
                     /locus_tag="VEQ16_09280"
     CDS             1871..>2700
                     /locus_tag="VEQ16_09280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND transporter"
                     /protein_id="HYP64068.1"
                     /translation="MKIIIAIVAAARRHAVLVICGFLLLAGLGLRYTATHLSIDTDTD
                     HLFAASLPWRQAQIQESRNFPQFNDITVAVVRAATPEEARETAMALTAALNADKAHFH
                     SAFYQAGEPFYSQEGLLLFPPDDLAKQLSQIVAAQPFLGQLAADPSARGLLTGLGLIA
                     KGVQTGTDISPYNTALLSLEHNLQEAAAGRPEPLSWQSLLMGNQGGAEFVIAHPILNQ
                     GSLQPGGLATASLVQIAHSLPDVQAGRATVDYTGQIPLSDEQFASLTHGLVLGGIISV
                     A"
BASE COUNT          484 a          834 c          839 g          543 t
ORIGIN      
        1 cggcgcccag gcgcaaaatc tgccgcactt cctcgggtgg gctgcggcgc aggaaggggg
       61 ctagaatctc atctaggctg ccggcatggc gcagcacgca ggcggcgagg cggtgcgccg
      121 cggcgcggtc gcgcggctcc agtttcggca ggcggtccag cgccgcatcc agcggcgcgc
      181 ccttggccag cacggcctga aggagcgaaa atgcggcgtc tctggtcggg tcggtcataa
      241 cgggcgggca acctggttcg gcggatggtc aaagctggaa agaacgcctc cataaaccca
      301 gtcgtctctc cgcgccatgc ggccgggaag tttttgtggt ttgcggcatt gcggcaggat
      361 cgtgcccatg cgctcggctt ctagggcttt ctattcgggg cacggcgcct gcccggccgg
      421 atttgcatcc tgctgttcct gctcaaatcc ggtgctgaac tgcagatgac ggcggctgtg
      481 gagaccgtcg atgaccgtga gatgcgcgac aggttgctca cacagctcgc catggcggaa
      541 tatctgggca actcgtattt cgcgtccttc aacgccatcg atccagcgat cggcgcgcag
      601 ctcgtcgatt ttaaccgcgt tttgacgcgc cgtgcggtga atacccccta tgtgaagcgt
      661 ttcggccgcg cgaaggccac gtacaggagc tccaatattg tctgccttta cggcaaaccg
      721 gactttacgg caaaccggaa tatttatccc tgcagcaggc cttgttctcg gccgcggcgg
      781 ggatacggga ttatgagttc atctatgtca gcgacagccc cgagattgcc aggcagcttc
      841 tgaaggaagc cgaattatgc tcgatgattt atgggctgga tctcaccctc gtcatcctca
      901 atagccatgc gggctgcggc ggaacgcatc acccatggcg aggacgggct gctctttgaa
      961 ctcggcgatg cgcgcgctgg cggagacgat gctgcgcgcc tgcaccgagg acgggctttg
     1021 ggacaggctc gctgccggga tcaagccgcc gccggagcgc gccgaaatgg tggatggcta
     1081 cctgcaggtc taccggcaag agctatggag cgcgaacctc gccgccgagt agatttgcac
     1141 cggccggcgc ggcatcgccg gctgtacatc gatcaggggc gtgccttgct aggcaataga
     1201 ggccatgggg cagctacggc cgtgccatgc ccggcatcaa aacggattcc cgctttttcg
     1261 gctaatatac tggtatgtca ggaattttca gggaacctgg tggagctgag gggaatcgaa
     1321 cccctgacct cgtcattgcg aacgacgcgc tctaccaact gagctacagc cccggcctga
     1381 aaaggattca ggatccatgt gggggcgcca tgtcgcgcat tcgcggtaag aagtcaacca
     1441 gcccgcattg ggaatcatgg caacattgcc atctcccgcc cgcccctcta actgttggcc
     1501 acacattttc ttgaggcgaa tcatggtggg cgcaattttc aggctgaccg gcgaaatcat
     1561 ccatctgctg atcctggcca tcatcgccgc ggcggtgatg agcatactga tcgctttcgg
     1621 tgtcgcgaat ccgcgcaacc agctcgtcta ttccgtggcc gatttcctca acaagatcac
     1681 cgacccgatt ctgcgtccga tccgtaattt cgtgccatta ttcggcaatg tcgacatctc
     1741 gccggtgatc gccatattgc tgctccaagc tttgcagatg gtgctggcgg atatagaagg
     1801 gcgcctcatc gtcgcgggct atgcattctg aggcgtcccg gcgccgttaa tgattaaagg
     1861 ggcctgagga gtgaaaatca tcattgccat cgtggcggcg gcgcgccgcc atgccgtgct
     1921 ggtcatatgc gggtttctgc ttctggccgg gctggggctg cgctataccg cgacgcatct
     1981 ctccatcgac acggataccg accatctctt cgcggccagc ctgccctggc gccaggcgca
     2041 gattcaggaa agccgcaatt tcccgcaatt caatgacata acggtggcgg tggtgcgcgc
     2101 cgccacgccg gaggaggcgc gcgagaccgc catggcgctg accgcggcgc tgaatgcgga
     2161 caaggcgcat tttcactctg ccttttacca ggccggcgag cctttctaca gccaggaagg
     2221 tctgttgctg ttcccgccgg atgatctggc caagcagctc agccagattg ttgccgcgca
     2281 gcctttcctc ggccagctgg cggctgaccc gtccgcgcgc ggcctgctca ccgggcttgg
     2341 cctcatcgca aagggtgtgc agacggggac ggatatctcg ccctacaaca ccgccctcct
     2401 cagccttgag cataatttgc aggaagccgc cgcaggccgt ccggagccgc tctcctggca
     2461 gtcgctgctg atgggcaacc agggtggtgc tgaatttgtc atcgcccacc cgattctcaa
     2521 ccagggcagc ctgcaaccgg gtggccttgc aacagcctcc ctggtgcaga ttgcgcatag
     2581 cctgccggat gtgcaggccg gacgcgccac ggtggattat accgggcaga ttccgctctc
     2641 ggacgagcag ttcgcctcgc tcacccacgg gctggtgctg ggcggcatca tctcggtcgc
//
LOCUS       DASQCV010000604         3570 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1126518, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000604 DASQCV010000000
VERSION     DASQCV010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3570
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1126518"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..516)
                     /locus_tag="VEQ16_09285"
     CDS             complement(<1..516)
                     /locus_tag="VEQ16_09285"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP64069.1"
                     /translation="MSSLSSSVDSSLGPKPSVIPRNVAIGCATAGFGAFINMWCTQPI
                     LPVLAQSLHAGLAATNNTVTAPLVATAMIAPFSGALSDRFGRKIFICGAAFLLVLPTL
                     LAAMADNLAMLTICRFVQGLLLPFIFTVTIAYMADEFSPATATKLAGIYLSGTISGGF
                     SGRLVSGFVTEF"
     gene            complement(485..1054)
                     /locus_tag="VEQ16_09290"
     CDS             complement(485..1054)
                     /locus_tag="VEQ16_09290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HYP64070.1"
                     /translation="MNIQRRAILASLVSLSGCASLRAPGYHLPPLPAAPPGPYRLGSG
                     DALNIRIYDQPQLSGSYNVDDSGFIDMPLLGPVPAMGASTNALEQAITLALQKNGLIL
                     HPAVSAEISTYRPFYILGEVNTPGQYPFRPGMTALTAISIAGGFTYRGEQDYVGVTRD
                     IGNDAAQYRAPTSALVQPGDVITVFERRF"
     gene            1132..1980
                     /locus_tag="VEQ16_09295"
     CDS             1132..1980
                     /locus_tag="VEQ16_09295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64071.1"
                     /translation="MKRILFGPVILVLILVLVLGAGWFWLQRGPGPKTADGAANQDAR
                     ALTSTEQAAFLPLVCGGASAGGGGYAHNCTSLPGYPSDDYGGAGTGLGITLTSIAYGN
                     FTAPDQAYVSYQGSFEPHVNNFGGGILFQNSASGWALAAWHPGNSLDGCLALNPSGQT
                     PFLCTGGSTGQGETDTELGVATVDGRLTKILTAADLRETMDANANCGQRKPGQDVLLS
                     IDSVARDGAAFEVKVQYVPAATANAACQAKNFGAVAVTKTALPVAWNGSAAQVTTSPH
                     NFAPGW"
     gene            complement(1943..2902)
                     /locus_tag="VEQ16_09300"
     CDS             complement(1943..2902)
                     /locus_tag="VEQ16_09300"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005488 - binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYP64072.1"
                     /translation="MADTTTKPDTLELSRLFPVPREILFRAWSDAAHIKRWFSPADCT
                     VPEADIDFRAGGAIAVCMKLPDGTLNWSRGTFTEVTPPERLAFEGGVSSDGKLHFNVH
                     TLVTFTEEAGGTRMGVRQSYELFDEVAQNAVSGSREGWRTTLDKLAALATQLTTPSVQ
                     GSFTAERVFAASPARVFHALTNLEAKSKWFAGGHEQEILERNMDARPGGRERVQGRFP
                     NGTVSCFDALYFDVVPNRRLVYAYEMHLNVVKISVSLATLELSPAQGGTKLVLTEQGS
                     FLDGYEDNGSREEGTNFLLDRLGASLGGPGPVTSPAQNCGAKS"
     gene            complement(2895..3239)
                     /locus_tag="VEQ16_09305"
     CDS             complement(2895..3239)
                     /locus_tag="VEQ16_09305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008943361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYP64073.1"
                     /translation="MLNQSTSLDLAFQALADPARRAMLERLSRGPASVSELAQPLQMS
                     MPAVLQHLAVLEQAGLASSRKVGRVRSCELGAARLDEVQNWLKARRAEWEARFDRLAA
                     YLNETKEGDQHG"
     gene            3319..>3570
                     /locus_tag="VEQ16_09310"
     CDS             3319..>3570
                     /locus_tag="VEQ16_09310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HYP64074.1"
                     /translation="MLQARHALIEAAQSMAARGLSAGTSGNVSLRTEEGILITPSATA
                     YETLTPEMIPLLKPDGSYEGRFRPSSEWRFHRDIYLARPE"
BASE COUNT          659 a         1065 c         1213 g          633 t
ORIGIN      
        1 aaattcggtg acgaacccgc tcaccagccg tccggaaaac ccgccggaga tggtaccgga
       61 gagatatatg ccggcaagtt tggtggcggt ggcaggggaa aattcgtcag ccatatacgc
      121 aatggtgact gtgaagatga agggcagcag cagcccctgc acgaagcggc agatggtgag
      181 catggccagg ttgtccgcca tggcggcgag caaagtgggc aggaccagca ggaaggccgc
      241 gccgcagatg aagattttgc gcccgaaccg gtccgacagc gcgccgctga acggggcgat
      301 catcgccgtg gccacgagcg gggccgtaac ggtattgttg gtggcggcaa gccccgcatg
      361 cagcgactgc gcgagcacgg gcaggatggg ttgcgtgcac cacatattga tgaaggcgcc
      421 gaaccccgcg gtggcgcagc caatggcgac attgcgggga atgacggaag gtttcggccc
      481 aaggctagaa tcgacgctcg aagacagtga tgacatcgcc gggctgcacc agtgccgaag
      541 tgggggcgcg atactgggca gcatcattgc caatatcgcg cgtgaccccg acatagtcct
      601 gctccccccg ataggtgaag cctccggcga tggaaatcgc ggtgagggca gtcatgccgg
      661 gacggaatgg gtattggccc ggcgtgttga cctcgccgag aatatagaag gggcggtagg
      721 ttgagatttc cgcgctgacg gccggatgca ggatcagccc gtttttctgc agggccaaag
      781 taatggcctg ttccagcgca ttggtgctgg cccccatggc tggcacgggg ccgagcaaag
      841 gcatgtcgat aaagccgcta tcatccacat tatagctgcc ggagagctgc ggctggtcat
      901 agatgcggat attaagcgca tcgcctgagc cgagccggta ggggccaggc ggggcagcag
      961 gcagaggcgg cagatgatag cccggggcgc gcaggctggc acagccgcta aggctgacga
     1021 ggctggccag gattgcgcgt ctttggatgt tcattcgtgc attgcttaac cttagattgt
     1081 aatcaattta cccatattgg caaaaagagc aatgcggcgc agaaacgcgg catgaaacga
     1141 atcctctttg gcccagtgat tcttgtgttg attcttgtgc ttgtgctggg tgctggctgg
     1201 ttctggctgc agcgcgggcc ggggccgaaa accgccgatg gtgccgccaa ccaggacgcc
     1261 agggcactga ccagcaccga gcaggcggcg tttttgcccc tggtatgcgg tggtgccagc
     1321 gccgggggcg gcggttatgc gcataattgc accagcctgc cgggctatcc ttcggatgat
     1381 tatggcggcg ccggcacggg gctcggcatc acgctcacca gcatcgccta tggcaatttc
     1441 accgcaccgg accaggccta tgtgtcctac cagggcagct tcgagccgca tgtgaataat
     1501 ttcggcggcg gcatcctgtt ccagaacagt gccagcggct gggcgctcgc cgcctggcat
     1561 cccggcaaca gcctggatgg ctgccttgcc ctcaacccct cagggcagac acccttcctc
     1621 tgcaccggcg gctccaccgg ccagggcgag acggatacgg agctgggcgt ggccacagtg
     1681 gatggcaggc tgacaaaaat cctcaccgcc gcggatttgc gcgagacgat ggatgccaat
     1741 gcgaattgcg gtcagcgcaa gccgggccag gatgtgcttc tcagcatcga ttccgtggcc
     1801 cgggatggcg ctgccttcga ggtgaaggtg caatatgtac ccgccgccac cgccaatgcc
     1861 gcctgccagg cgaagaattt cggcgcggtg gcggtgacca aaaccgcgct gccagtggca
     1921 tggaacggca gcgcggcgca ggttacgact tcgccccaca attttgcgcc gggctggtaa
     1981 cgggtccggg tccgcccagc gacgcgccga gtctgtcgag caggaaattc gtgccctcct
     2041 cgcgtgagcc gttatcctcg tagccatcga ggaaactgcc ctgctcggtg agcaccagtt
     2101 ttgttccgcc ctgcgctggg ctcagctcca gtgtggccag agagaccgag atttttacga
     2161 cgttgagatg catctcatag gcatagacga ggcggcggtt ggggacgacg tcgaaataaa
     2221 gcgcgtcgaa gcaggaaacg gtgccattgg gaaagcggcc ctgcacgcgc tcgcgcccgc
     2281 cgggccgtgc gtccatgttg cgttcgagaa tttcctgctc atggccgccg gcaaaccatt
     2341 tggatttggc ttccaggttg gtgagggcgt ggaagacgcg ggcaggtgag gcggcaaaga
     2401 cgcgctccgc cgtaaaactg ccttgcacgg acggggtggt gagctgcgtg gcgagcgcgg
     2461 ccagtttgtc cagcgtggtg cgccagcctt cccttgagcc gctgacggcg ttttgcgcca
     2521 cctcgtcgaa caattcgtag ctctgccgca cgcccatgcg cgtgccgcct gcctcctcgg
     2581 tgaaggtgac gagcgtgtgc acgttgaaat gcagcttgcc gtccgaggag acaccgccct
     2641 cgaaggccag ccgttccggc ggcgtgacct ccgtgaaggt gccgcgcgac cagttgagcg
     2701 tgccgtccgg cagtttcatg cagaccgcga tggcgccgcc ggcgcgaaaa tcgatgtccg
     2761 cctccggcac cgtgcaatcc gccgggctga accagcgctt gatatgcgcc gcatcgctcc
     2821 aggcgcggaa caagatctcg cgcggcacgg ggaagaggcg ggagagttcg agcgtgtcgg
     2881 gtttggtggt ggtgtcagcc atgttggtct ccttccttgg tctcgttgag ataggcggcc
     2941 aggcggtcga agcgggcttc ccattccgcg cgccgcgcct tcagccagtt ttgcacctcg
     3001 tccagccgcg ccgcgccgag ctcgcagctg cgcacccgcc ccactttgcg cgagctggcg
     3061 agcccggcct gctccagcac ggcgagatgc tgcagcaccg ccggcatgga catttgcagc
     3121 ggctgcgcca gctcgctcac cgaggccggg ccgcgcgaga ggcgctccag catggcgcgg
     3181 cgagccgggt cggcgagggc ttggaaggcg aggtcgaggg aggtggattg gttaagcatg
     3241 gacttaacta taaggggcgg gaatagataa gtcaacactt aactattgcg gccgcgcccg
     3301 gccatgctac gggcagccat gctgcaagcc cgtcacgccc ttatcgaagc tgcccagagc
     3361 atggccgcgc gcggcctttc ggccggcacc tccggcaatg tgtcgctgcg cacggaggag
     3421 gggattctca tcaccccctc ggccacggct tatgagacgc tgacgccgga gatgatccca
     3481 ctgctcaagc cggatgggtc ctatgaaggg cggttccggc cgtcttcgga gtggcgcttc
     3541 catcgggata tttatctggc ccggccggaa
//
LOCUS       DASQCV010000605         2317 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1457938, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000605 DASQCV010000000
VERSION     DASQCV010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2317
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1457938"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..559
                     /locus_tag="VEQ16_09315"
     CDS             <1..559
                     /locus_tag="VEQ16_09315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64075.1"
                     /translation="VTAVERDKARMATLQGNLQRLGLSAELVTADAGQWRPAQKFPAI
                     LLDAPCSATGTSRRHPELLHLRKPQDFTKVTALQDKLLDAAAAMLAPGGRLIYAVCSL
                     QPEEGSARVDAACARLGLKRAPLTLPDLPEAVTAQGDIRTHPGLWSGRGGMDGFFIAR
                     LVKDEEEVEYASPPCLARELGPDFS"
     gene            complement(608..1795)
                     /locus_tag="VEQ16_09320"
     CDS             complement(608..1795)
                     /locus_tag="VEQ16_09320"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 87 protein"
                     /protein_id="HYP64076.1"
                     /translation="MSSPARPRYSLVLAAALLLLFYPIFAASNARLMLAMHNGPETLI
                     AAHELPQSDFGLFWCAGKGLAAKAAQRFGLIGPDPAYQQICQLDVLANDAPQALAWPY
                     PPPAGFVVLPLAVLPLPLSFWVWRVLCLVLGGWLLRRSGLGWAVIVAGLASPASLHDM
                     TGGQNGTITGAMLVAILLWAPIRPRAAGMLAGLLALKPQLGILLPAIIWRRSGLQLML
                     AGLCTVLVLVLGSLVLWGPEQWAWFLRVAEPDEMRTAALPFSRFFPAAGITVYDMAHS
                     LGAAPRPAWTVQLAASAVALALTFTVWREGVMQPVPRMALTVCLTLLAMPHGFSYDLV
                     GFSIAMAALFFRARPWEKLLLAALWLMGGYTIMLANYTGLLLFPLWTACGAGLAWRLR
                     HTG"
     gene            1878..>2317
                     /locus_tag="VEQ16_09325"
     CDS             1878..>2317
                     /locus_tag="VEQ16_09325"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HYP64077.1"
                     /translation="MVFAPTRPLIAPSLLAADFARLAEEVVAIERAGADWLHLDVMDG
                     HFVPNITFGPMLVKALRKHSAMPFDAHLMIAPADPYIAAFAEAGADSITVHPEAGPHL
                     HRTLQLIRSLGKKAGVVLNPATPIETVVNVLDITDLIMVMTVNPG"
BASE COUNT          519 a          783 c          688 g          327 t
ORIGIN      
        1 ggtgacagcc gtggagcgcg acaaggcacg catggcaact ttgcaaggca atctgcaacg
       61 cctcgggctg agcgcggaac tggtcacggc agacgctggc caatggcgtc cggcgcaaaa
      121 atttcccgcc atcctgctgg atgccccctg cagcgccacc ggcacgtccc gccgccaccc
      181 cgagcttctg catctgcgca agccgcagga tttcaccaag gtgacggcac tgcaggacaa
      241 actcctcgat gccgccgccg ccatgctcgc cccgggcgga aggctgatct acgccgtatg
      301 ctcgctgcaa cccgaggaag gttccgcacg ggtggacgca gcctgcgccc ggctcggcct
      361 gaaacgcgcc ccactcactt tgccggacct gcccgaagcc gtgacagccc agggcgatat
      421 ccgcacccat cccggcctat ggtcaggacg cggcggcatg gacgggttct tcatcgcccg
      481 gctggtgaag gatgaggaag aggtggaata cgcctcgcca ccctgcctgg cacgggagct
      541 ggggccagat ttcagctaat cccacagaaa accacaacaa tcccacaaat agccacaaaa
      601 ccggccatca gcccgtgtgc cgcagcctcc aagccagccc ggcgccgcac gccgtccaga
      661 gcggaaacag cagcagcccg gtatagtttg cgagcatgat ggtgtagccg cccatcagcc
      721 acaaagctgc caacagcaac ttctcccaag gcctagcacg gaaaaacaac gctgccatgg
      781 cgatggaaaa accgacaagg tcataagaga aaccatgggg catggcgaga agcgtaaggc
      841 aaacggtaag ggccatacgg ggtactggct gcatcacccc ctcccgccaa acggtaaaag
      901 taagtgccaa cgccacagcc gaggcggcga gctgtaccgt ccaggccgga cgcggtgcgg
      961 cacccaggct gtgcgccata tcgtaaaccg tgattccggc ggctggaaaa aaccgggaaa
     1021 aaggcaaagc cgcggtgcgc atctcgtctg gctcggcgac acgcaggaac caagcccatt
     1081 gttccggccc ccacagcacc agcgaaccca gaaccagcac aagcacggtg catagccccg
     1141 ccagcatcaa ctgcaagccg ctgcggcgcc agataatagc gggaagcaaa atcccgagct
     1201 gcggtttgag cgccaacaac ccggctagca taccagcggc acgcggccgg atcggcgccc
     1261 acagcaaaat ggcgacaagc atggcgccgg tgatcgtgcc gttctgacca ccggtcatgt
     1321 catgcaaaga ggcgggactg gccaaccctg caacaatgac agcccaacca agcccagaac
     1381 ggcgcagcaa ccacccaccc agcaccaggc aaagcacccg ccatacccag aagctgagcg
     1441 gcaaaggcag gaccgccaac ggcagcacga caaatccagc cggcggcgga tagggccagg
     1501 ccagggcctg gggagcatca ttggccaaga catcgagctg acagatctgc tgatatgccg
     1561 ggtccggccc gattaggccg aatctctgcg ccgccttggc cgccaggccc ttgcccgcgc
     1621 accagaacag cccgaaatcc gattgcggca gctcatgcgc ggcgatcaac gtctcgggcc
     1681 cgttatgcat cgccagcatc agccgcgcat tgctagcggc gaagatgggg tagaacaaaa
     1741 ggagcaatgc ggcggcaaga acgaggctgt agcggggccg ggcgggagag gacatgagcg
     1801 tttcttaacc gttcccactg ccggttcaac cgtccccgct tgtgaatgta accgccaagc
     1861 ggctagaaac ccccatcatg gttttcgcac cgactcgtcc gctcatcgcc ccgtccctgc
     1921 tcgccgccga tttcgcgcgc ctcgccgaag aagtggtggc cattgagcgc gccggggcgg
     1981 actggctgca tctggatgtg atggacgggc atttcgtccc caacatcacc ttcggcccga
     2041 tgctggtgaa ggcgctgcgc aaacacagcg ccatgccgtt cgatgcgcat ctaatgatcg
     2101 cgccggccga tccctatatt gccgcctttg ccgaggccgg ggcggacagc atcaccgtgc
     2161 atccggaggc cgggccgcat ctgcaccgca ccctccagct catccgctcg ctcggcaaga
     2221 aggcgggcgt ggtgttgaat ccggccacgc ctatcgagac ggtggtgaat gtgctcgaca
     2281 tcactgacct catcatggtg atgacggtca atcccgg
//
LOCUS       DASQCV010000606         1530 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1789585, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000606 DASQCV010000000
VERSION     DASQCV010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1789585"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1530)
                     /locus_tag="VEQ16_09330"
     CDS             complement(<1..>1530)
                     /locus_tag="VEQ16_09330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP64078.1"
                     /translation="AMTAVLIAVYVPIGFQTGLTGALFTEFAFTLAGAVTVSAIIALT
                     LTPMLSSRFLKHIDRESPGVEAWLVNFIDARMGEVHRVYTRLLHGSLETVPVTLTFAG
                     IVLVSIFFLATGASKELAPNEDQGVTFAFSNSAPNATFTQSAMWDRALSAMLLKTPDL
                     QLTFHISSPGLDLTGEVLKPWAERKHGAQYYMTQWQDEANKEIAGQQIVFNQPPPLPG
                     AQGFPVEFAIKSTASEAEIYPDAQTLLAAAQKSGKFIFIESNLKIDQPQANLIIDRDK
                     AASMGLNMSDVGAALSQALGGNYVNYFDLDGRSYKVIPQVQRAARLNVSDLNNYYILS
                     SNNINVPLSSIASIQTSVIPETINHFQQQNSATLQGVPAPGVSQAAALAELQQLGKKL
                     LPPDDQIDYGGPIRQYVQTSNSFVFTFIFALVIIFLALSALFNSFRDPLIILVSVPMS
                     IAGALIFIYLGVGGLSLNIYTEVGLVTLMGLISKHGILMTEVANEARLRGMEKRAAIE
                     YA"
BASE COUNT          312 a          476 c          457 g          285 t
ORIGIN      
        1 ggcatattcg atggccgcgc gcttctccat gcccctcagg cgcgcctcat tcgccacttc
       61 ggtcatcagg atgccgtgct tggaaatcag ccccatcagc gtcaccagcc cgacctcggt
      121 gtagatgttc aaagacagac cgccaacgcc gagataaatg aagatcagcg cgccggcgat
      181 cgacatcggc accgagacca gaatgatcag cgggtcgcgg aaggaattga acaaggccga
      241 cagcgccagg aagatgatca ccagcgcgaa gatgaaggtg aagacgaagc tattgctggt
      301 ctgcacatat tgccggatcg gcccgccata atcgatctgg tcgtccggcg gcagaagttt
      361 cttgcccagc tgctgcaact ccgccagggc cgccgcctgg ctcacccccg gcgccggcac
      421 gccctgcagc gtggcggaat tctgctgctg gaaatgattg atggtttccg gaatgacgct
      481 ggtctggatg ctggcgatgg aggagagcgg cacattgatg ttattcgacg acaatatgta
      541 ataattattc aaatccgaca cattcagccg ggccgcccgc tgcacctgcg ggatgacctt
      601 gtaggagcgt ccatccaggt cgaaataatt cacgtaattc ccgcccagcg cctgggagag
      661 cgcggcaccc acatcgctca tgttcagccc catcgacgcc gccttgtcgc ggtcgatgat
      721 gagattggcc tggggctggt cgatcttgag attgctctcg atgaagatga acttgccgct
      781 cttctgcgcc gccgccagca gcgtctgcgc gtccggataa atctccgcct ccgacgcggt
      841 ggatttaatg gcgaactcga ccggaaaacc ctgcgccccc ggcagtggcg gcggctggtt
      901 gaacactatc tgctggccgg cgatctcctt gttcgcctcg tcctgccact gcgtcatgta
      961 atattgcgcg ccatgcttgc gctcggccca gggcttcagc acctcgccgg tcagatccaa
     1021 tcctggcgag ctgatatgga aggtgagctg caaatccggc gtcttcagca gcatcgcgct
     1081 cagcgcgcgg tcccacatcg cgctctgggt gaaggtggca ttcggcgccg agttggaaaa
     1141 ggcgaaggtc acgccttggt cctcgttcgg tgccagctcc ttcgaggcgc cggtggcgag
     1201 gaagaagatg ctcaccagca cgatgccggc gaaggtcagc gtcaccggca cggtctccag
     1261 actgccatgc agcaatcggg tgtaaacgcg atgcacctca cccatgcgcg catcgatgaa
     1321 attcaccagc cacgcctcga cccccggcga ttcacggtcg atatgcttga ggaagcgtga
     1381 tgagagcatc ggcgtcagcg tcagcgcaat gatggccgac accgtcaccg ccccggcgag
     1441 ggtgaaggcg aattcggtaa acagcgcgcc ggtcagcccg gtctgaaaac cgatcggcac
     1501 atagaccgcg atcagcaccg ccgtcatggc
//
LOCUS       DASQCV010000607         3951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_293312, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000607 DASQCV010000000
VERSION     DASQCV010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3951
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_293312"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1461
                     /locus_tag="VEQ16_09335"
     CDS             <1..1461
                     /locus_tag="VEQ16_09335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012553777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP64079.1"
                     /translation="RPPVGTRIEDASAQFGNMENAIRQIIPSGELANIVDNIGLPISS
                     INLTYSTDGVIGYQDGDIFISLKPGHRPTADFVRILRQRLPQEFPGTSFAFLPADIVS
                     QILNFGSPAPIDVQVAGAKLDANRAWATTLLRRMGSVPGIADARIQQSPDNPQLNVNV
                     DRSRIAQFGLSELNVTNSVATMLAGTSQVTPTYWLDPVSGVSYPIVTQAPEYNVDSMS
                     GLQNIPINAPGTRAQPQVLGGIATITRSQSNAVVTHYNIRPVIDIYATAQDRDLGGVT
                     SDVRAVIAKMPPLPKGSTITVRGQAATMQIAFASLLFGLLGAIVLIYLLIVVNFQSWL
                     DPFIIITALPAALAGILWMLFATGTTLSVPALTGAIMCMGVATANSILVVSFAREQLA
                     AGKSPRAAAVEAGIVRFRPVLMTALAMIIGMAPMALGLGEGGEQNAPLGRAVIGGLIF
                     ATCATLLFVPVIFSIFHERAATRRAQAGGHPGGTHG"
     gene            1454..2623
                     /locus_tag="VEQ16_09340"
     CDS             1454..2623
                     /locus_tag="VEQ16_09340"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HYP64080.1"
                     /translation="MADQDDMLRYNAPPQLKLYFSIAAAIFTLILVTGIFTRVFAAHK
                     LAAATASAAIPTVALIAPSAPTQAPTLVLPGNVKAFYEAPIYAQVSGYLQSWTADIGA
                     RVKAGEVLGTISTPNLDQQLAQAEANLNSAIASEKIAATTANRWNAMRVGDAVSQQDA
                     DQKNADNQSAHATTEAARAAVAGYQAQVAFKQIVAPFDGIVTARNTDIGDLVTTGGTT
                     PLFVVDDEARLRIYVSVPEAYAAEVKQSSGATFTVPDYPGRTFRATLAATAGAIDPTS
                     GTLLVQFQADNQDGALQAGDYAQVTISLPANGQALSVPSSALMFRDNGMEVATLGPDN
                     RVVIKPVTIGRDFGNVVQIATGISKDDRIINNPPDALEAGDEVQVAQAKTAPSTH"
     gene            complement(2663..3235)
                     /locus_tag="VEQ16_09345"
     CDS             complement(2663..3235)
                     /locus_tag="VEQ16_09345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HYP64081.1"
                     /translation="MNMMQRQTAIEATPASATRYDNVTIALHWAMAGLVVAQFLLAEF
                     WGFFPRPEHHLMIVTHMSLGLILTAVLALRFIWRAKFGRRLPPAGVGVLDRVAKVMHH
                     TLYMLLVAEIPLGFLTRWTDNQALSFFGLLIPSPFGHFSRTTGWVVDQIHDYAAWTII
                     ILAAIHAAAALFHHYLWKDGVLRRMLPLRV"
     gene            3451..>3951
                     /locus_tag="VEQ16_09350"
     CDS             3451..>3951
                     /locus_tag="VEQ16_09350"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP64082.1"
                     /translation="MRILFAFENPLPNAEADAEVFVTTAKYLAPFTSGAALHAPIAKG
                     ATLAQVQALAGMDIVSVWAPLAPAALRHFCAGLTIVLRSAFRRADLVYTRNLWVAFMS
                     ILFGQRVVFDHYRPWPDQIPPLQYFLYRLFCHRRFLGSICHSEYTRRKYIELGVPAEK
                     LRCVHNG"
BASE COUNT          722 a         1383 c         1107 g          739 t
ORIGIN      
        1 cgcccgcccg tcggcacgcg catcgaggat gcctcggcgc agttcggcaa tatggaaaac
       61 gcgatccgcc agatcatccc gtccggtgag ctcgccaata ttgtcgataa tatcggcctg
      121 cccatcagct ccatcaatct cacctacagc acggacggcg tcatcggtta tcaggatggc
      181 gacatcttca tcagcctcaa gccgggccac cgccccacgg ctgatttcgt ccgcattctg
      241 cgccagcgcc tgccacagga attccctggc accagctttg ccttcctgcc ggcggacatt
      301 gtcagccaga tcctgaattt cggctcgccc gcgcctatcg acgtgcaagt cgccggcgcc
      361 aagttggatg ccaaccgtgc ctgggccacc acgctgctgc gccgcatggg ctctgttccc
      421 ggcattgccg atgcgcgcat ccagcaatcg cccgacaacc cgcagctcaa cgtcaatgtc
      481 gaccgttccc gcattgcgca attcggtttg agcgaactca acgtcaccaa ctcggtcgcc
      541 accatgctgg ccggtacctc gcaggtaacg cccacctact ggctcgaccc cgttagcggc
      601 gtatcctatc ccatcgtcac ccaggcaccg gaatataatg tggatagcat gtccgggctg
      661 cagaacatcc ccatcaacgc gccgggcacc agagcccagc cgcaggtgct gggcggcatc
      721 gccaccatta cgcgttcgca atcgaatgcc gtggtcacgc attataatat ccgtccggtc
      781 atcgacatct acgccaccgc gcaggaccgc gaccttggcg gcgtcacctc ggacgtacgc
      841 gcggtcatcg ccaagatgcc gcctctaccc aagggcagca ccattaccgt gcgcggccag
      901 gcggcgacga tgcagatcgc ctttgccagc ctgctcttcg gcctgctcgg tgccattgtg
      961 ctcatctatc tgctcatcgt cgtaaatttt cagtcctggc tcgacccgtt catcatcatc
     1021 acagccttgc ccgcggcgct tgccggcatc ctttggatgc tgttcgccac cggcaccaca
     1081 ttatccgtgc ccgcgcttac cggggccatc atgtgcatgg gtgtcgccac agccaactcc
     1141 attctcgtcg tctccttcgc ccgtgagcag ctcgctgccg gcaaatcacc cagggcggcg
     1201 gcggtggagg ctggtatcgt gcgcttccgc ccggtgctga tgacggcgct cgccatgatc
     1261 atcggcatgg cgcccatggc actcggactt ggcgagggcg gtgagcagaa cgccccgctg
     1321 gggcgcgctg tgattggcgg cctgattttt gccacctgcg cgactttgct gttcgtgcca
     1381 gtgattttca gtatctttca tgagcgggcg gcaacgcgcc gggcgcaagc cggcggccac
     1441 ccgggaggga cacatggctg accaagacga tatgctgcgc tacaacgcgc cgccccagct
     1501 gaaactctat tttagcatcg cggccgccat tttcaccctg atcctcgtga ccggcatttt
     1561 cacccgcgtc ttcgcggcgc ataagctcgc tgccgccacc gcctcggccg cgatccccac
     1621 cgtcgccctc atcgcgccga gcgcccccac ccaggcgccc accttggttc tgcccggcaa
     1681 tgtcaaagcc ttctacgagg caccgatcta cgctcaggtc agcggctatc tgcagagttg
     1741 gacggccgat atcggcgcca gggtgaaagc gggcgaagtg ctcggtacca tctcaacccc
     1801 caatctcgat caacaactcg cccaggcaga ggccaatctc aactccgcca tcgccagcga
     1861 aaagatcgcc gccaccacag ccaatcgctg gaacgcgatg cgtgtgggcg atgcggtctc
     1921 gcagcaagat gccgaccaga agaacgcgga caaccaatcc gcccacgcca ccaccgaggc
     1981 cgcccgcgcc gccgtcgccg gctaccaggc gcaggtggca ttcaagcaga tcgttgcccc
     2041 gttcgacggc atcgtcaccg cccgcaatac cgatatcggc gacctcgtca ccactggcgg
     2101 cacgacgccg cttttcgtcg tcgatgacga agcccgcctg cgcatttatg tgagcgtacc
     2161 tgaagcctac gccgccgagg tgaaacagag cagcggcgcc accttcaccg tgccggacta
     2221 tccgggccga accttcaggg ccacgcttgc cgccaccgcc ggcgccatcg accccacttc
     2281 aggcacgttg ctggtgcaat tccaggctga caaccaggat ggcgcactgc aggccggcga
     2341 ttacgcccag gtcaccatct ctctgcccgc taacgggcag gcgctgtccg tgccgtccag
     2401 cgccctgatg ttccgcgata acggcatgga agtcgcaacg ctcgggccgg ataaccgcgt
     2461 cgtcatcaag ccggttacca tcggccgtga cttcggcaat gttgtgcaga tcgccaccgg
     2521 catcagcaag gatgaccgga tcatcaacaa cccgcccgac gctttagaag cgggcgatga
     2581 ggtccaggtc gcccaagcca aaaccgcgcc gagcacgcat tagcgtccgg tgcggcctgg
     2641 gttgcgtgct ggcggggctg cttcaaaccc gcagcggcag catccgccgc agcacgccat
     2701 ccttccacag ataatgatgg aacagcgccg ccgccgcatg gatggcggcg aggatgataa
     2761 tggtccaggc cgcataatca tggatctggt cgaccaccca gccggttgtc cgcgaaaaat
     2821 gtccgaaagg cgaggggatg agcagcccaa aaaagctcag cgcctggttg tcggtccagc
     2881 gcgtgaggaa gccgagcgga atctcggcca ccagcagcat atagagcgta tggtgcatga
     2941 ccttcgccac ccggtccagg acgcccaccc ccgccggtgg caggcgccgc ccgaatttcg
     3001 cgcgccagat aaaacgtaag gccaaaaccg ccgtcaggat gaggccgagg gacatatgcg
     3061 tcacgatcat cagatgatgt tccggccgcg ggaaaaagcc ccagaattcc gccagaagga
     3121 attgtgccac gaccaacccc gccatggccc agtgcagcgc gatggtcacg ttgtcatagc
     3181 gcgtggcgct ggctggagtg gcctcaattg ccgtctggcg ttgcatcata ttcatcatca
     3241 ggccctttca tcgtgccagg aggttgcctc ggcatataaa acggcacgct atgtccgtgg
     3301 attaccgatt gtatctgccg catggcagca tcatgacgct tctcttgccc cgctggggcg
     3361 ttgcgcctag tttgccgcgg ccgcgcgggc ccgccgcgcg gcttgttttt acgccccggc
     3421 ggcctttggg ccggatgata tggtcgatgc atgagaattt tattcgcgtt cgaaaaccct
     3481 ctgcctaatg ccgaggctga tgccgaggtt ttcgtcacga ccgccaaata tctcgctccc
     3541 ttcacttcgg gcgcggcgct gcacgctccc atcgccaagg gcgccacgct ggcgcaggtc
     3601 caggcgctcg ctggcatgga tatcgtgtcc gtttgggccc cgcttgcgcc cgccgccctg
     3661 cgccatttct gcgccggcct cacaatcgtg ctgcgctctg ccttccgccg cgccgatctg
     3721 gtctataccc gcaatctctg ggtcgccttc atgtccatcc tgttcggcca acgcgtggtg
     3781 ttcgaccatt accgcccctg gcccgaccag atccccccgc tgcaatattt tctctaccgc
     3841 ctgttctgcc accgccgctt tctcggcagc atctgccact cggaatatac ccgccggaaa
     3901 tatatagagc tcggcgtgcc ggcggaaaaa ctccgctgtg tgcataatgg c
//
LOCUS       DASQCV010000608         1906 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3279465, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000608 DASQCV010000000
VERSION     DASQCV010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1906
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3279465"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..231
                     /locus_tag="VEQ16_09355"
     CDS             <1..231
                     /locus_tag="VEQ16_09355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64083.1"
                     /translation="ATLTVMAGFYYLRPFAYAWIAGVQASVGGRPVEVTLPIDAYLHQ
                     IDAVLAAVLGLVGLAIIWYHREDDSGIIYPSS"
     gene            578..>1906
                     /locus_tag="VEQ16_09360"
     CDS             578..>1906
                     /locus_tag="VEQ16_09360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64084.1"
                     /translation="MLDDAVRLLRRASPAALACHPIGSLPLAFSLVAAWNMAADPHTT
                     AAAWARGAIVPVLMLAWMNCWRAVYAAKLWEELCGSPIVRWTPVRITRLAAIECWFGT
                     AKLIVLPLAALVQFPLAETVAVYRYLPILATQTDLGPRQMVTRARELAARNRAQGWAI
                     LPILLFLQVVVDVNLAIVLAGLPQVVRILTGYESAFSRSGIYFISNPFFLVLVLVVSW
                     MSFDPFVQAVYTVRYFRAESVETGQDLRTGLRRLRAPALAAAALALLAALPAHLRAEV
                     SPQALRASIEEAVQAPEYDWRLPPPAASGTPWILRLTDRMVSAGRGVGRAIGRAVDRF
                     FRWLGEKLRGLLPTATPGGAPATDLHWIMYVMMGIALAAVAGVAWQKRRAPRIEKAPG
                     ASSQPVRLDAADLTPDLLQEETWTILAERSLSEQNYRFALRAFYLAGLAWL"
BASE COUNT          287 a          575 c          637 g          407 t
ORIGIN      
        1 gccactctaa cggtgatggc ggggttttac tatctccgtc cgttcgcata tgcgtggatt
       61 gcgggcgtac aggcatccgt gggagggcga ccggtagagg taaccttacc gatagacgct
      121 tacctgcatc agatcgatgc cgtactggcg gccgtgttgg gtctggtggg tttggctatt
      181 atttggtatc acagggaaga cgactcgggc atcatctatc cgtcctcatg aatcgcccgg
      241 tcgtccatca acgctgctgg aaccatgaag ggcgggaagc ggtgtgtctc tgccccgaat
      301 gcggccggag tttctgccgg gaatgcgtca gcgagcatga attgcgccta ctctgtgccg
      361 catgcctcgt ggcagtctcc cgaaaggccg aaccgcgttc gcggggtaca cctccgctcg
      421 cgctggccgt actggcgctg gcaggcatac tcgcaggctg gttagttttt ttcagtctgg
      481 gcgaagcctt gatgacattg aggtctcatc cggagccgcg ttcatggcag gaacgttagg
      541 gccgaagggt acgagcgaga gattcggatc gctcgccttg ctggacgatg ccgttcgcct
      601 gttacgccgc gcatcgccgg ccgcgctggc gtgccacccg atcggcagtt tgccgctggc
      661 attttctcta gtggcggcgt ggaatatggc tgcggatccg cataccacgg ccgccgcgtg
      721 ggcccgcggt gccatagtcc ccgtcctgat gctggcgtgg atgaattgct ggcgggcggt
      781 ttacgccgca aagctatggg aggaattgtg cggctctccc atcgttcgat ggactcccgt
      841 acgcatcact aggctggcgg ctatcgagtg ctggttcggg accgccaagc tgattgtgct
      901 gccgctggcc gccctggtgc aattccccct cgccgaaacg gtggcggtct accgttatct
      961 gcccatcctg gccacgcaaa cggatcttgg cccgcggcag atggtgacgc gcgcgcgcga
     1021 actagcggcc cgcaaccggg cgcagggctg ggcaattctt ccgatcctgc tgtttctgca
     1081 ggtggtggtg gatgtcaatc tggcgattgt gctggccggg ttgccgcaag tggtgcggat
     1141 cctgacgggc tacgaatctg ccttcagccg cagcggcatc tatttcatca gcaatccgtt
     1201 ctttctggtg ctcgtgttgg tggtttcgtg gatgagtttc gatccgttcg tgcaggcggt
     1261 ctacacggtg cggtatttcc gcgcggagtc ggtcgagaca ggtcaggacc tgcgcactgg
     1321 tctacgacgc ttgcgggcgc ccgcgctggc ggcggcagcc ctggcgctgc tcgccgcact
     1381 accggcacac cttagggccg aagtttcgcc acaggcgttg cgggcatcca tcgaagaggc
     1441 ggtgcaggcg cccgagtacg attggcggct gcccccaccc gcggcctccg gcacgccatg
     1501 gattttgcgt cttacagatc gcatggtgtc cgcgggccgc ggcgtgggtc gggcgatcgg
     1561 ccgggcagtt gatcgattct tccgttggct cggcgagaaa ctgcgaggct tgctgcccac
     1621 cgccacaccc ggcggagcgc cagccacgga cctccactgg attatgtacg tgatgatggg
     1681 gattgctctc gctgccgtgg ccggggtcgc ctggcagaag cgccgggcgc cgcgaatcga
     1741 gaaggcaccg ggcgcgagca gccagcccgt tcgcctggat gccgcggatc tgacgcccga
     1801 tcttctgcag gaagagacct ggaccatact ggcggaacgc tcgctttccg agcagaatta
     1861 ccgcttcgcc cttcgcgcct tttatctggc cggtctcgcg tggctg
//
LOCUS       DASQCV010000609         1923 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1953548, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000609 DASQCV010000000
VERSION     DASQCV010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1923
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1953548"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1011)
                     /locus_tag="VEQ16_09365"
     CDS             complement(<1..1011)
                     /locus_tag="VEQ16_09365"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HYP64085.1"
                     /translation="MLPPGSTIGIVGGGQLGRMSAMAAARLGYRAHIFAPEFHSPAAL
                     VSAAATVADYSHLPMLERFARAVDVVTFEFENLPADSLELLETLKPVRPGAQILRISQ
                     DRLLEKQFLNDAGIATAPWAKLESEAELAEAVARLGLPSVLKTTRLGYDGKGQALLRA
                     PEDLTPAFARLEPKPLVLEGFVNFAAEISVMVARGVDGTVVTFDAVENRHKHHILDLT
                     LAPAPMPVSVLEEAQAVARLVAERLELVGLLGVEMFVTADGAVLVNEIAPRPHNSGHW
                     TMDACACGQFEMHIRAVAGLPLPPAIRHSDAVMKNLIGPDDMALWPRILATPGLIPHH
                     YGK"
     gene            complement(1011..1493)
                     /gene="purE"
                     /locus_tag="VEQ16_09370"
     CDS             complement(1011..1493)
                     /gene="purE"
                     /locus_tag="VEQ16_09370"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HYP64086.1"
                     /translation="MSKPQVSIIMGSRSDWPVMEHAAQMLDKLGVPYEAKVVSAHRTP
                     KRLFEYASSAEARGIKIIIAGAGGAAHLPGMAASMTNLPVLGVPVPATALQGQDALLA
                     IVQMPGGVPVGTLAIGKPGAINAGLLAASILALSDPELRGRVAALRAAQTDEVPESPV
                     "
     gene            complement(1490..1693)
                     /locus_tag="VEQ16_09375"
     CDS             complement(1490..1693)
                     /locus_tag="VEQ16_09375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014106616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HYP64087.1"
                     /translation="MLTDKDNLLRRLHALRSEHRDLDTVIARITEHGPVDQLQVQRLK
                     KRKLGLKDEIARLESRLIPDRTA"
BASE COUNT          358 a          672 c          566 g          327 t
ORIGIN      
        1 cttgccgtaa tgatgcggaa tcaatccggg cgttgccagg atgcgcggcc atagcgccat
       61 gtcatccgga ccgatgagat ttttcatcac cgcatcggaa tgacgtatcg ccggcggaag
      121 tggcagccca gccacagcgc gtatatgcat ctcgaactgc ccgcacgcac atgcatccat
      181 cgtccaatgc ccggaattat gcgggcgagg cgcgatctcg ttcaccagca ccgcaccatc
      241 cgcggtcacg aacatttcca cgcccagcag cccaaccagc tccagcctct cagccacgag
      301 ccgggcaacc gcctgcgctt cctccagcac ggacaccggc atgggcgcag gcgctagagt
      361 gaggtcgaga atatggtgct tgtggcggtt ctccaccgcg tcgaacgtca ccactgtgcc
      421 atccaccccg cgcgccacca tcaccgagat ttccgcggcg aaattcacga acccttccag
      481 caccagcggc ttgggctcca gccgggcgaa agccggcgtc aggtcttccg gcgcgcgcag
      541 cagggcctgg cccttgccgt catagccaag ccgcgtcgtc ttcagcacgg agggcagacc
      601 caacctcgcc accgcctccg ccaactccgc ctcgctttcc agcttggccc agggcgcggt
      661 ggcgataccg gcatcgttca aaaattgttt ttcgaggaga cggtcctggc tgatgcgcag
      721 gatttgcgcg ccgggccgca ccggcttcag cgtctccagc agttccagag agtccgcggg
      781 cagattctcg aattcgaatg tcacaacatc caccgccctg gcgaaacgct ccagcatggg
      841 cagatggctg taatccgcca ccgtcgccgc cgcagatacg agagcggcgg gggaatgaaa
      901 ttccggggcg aaaatatgcg cgcgatagcc cagccgcgcc gccgccatgg cggacatacg
      961 ccccagctgc ccgccgccga cgatgccgat ggtcgaacca ggaggcagca tcacaccggg
     1021 ctctccggca cctcatccgt ctgcgcggcc ctgagggccg ccacgcggcc gcgcaattcg
     1081 gggtcagaca gcgccaatat ggaggccgcc agcagcccgg cattgatggc ccccggcttg
     1141 ccgatggcga gtgtccccac cggcacgccg cccggcatct gcacgatggc gagcagcgcg
     1201 tcctgcccct gcaaggcagt ggccggcacc ggcacgccca gcaccggcag attggtcatg
     1261 gacgccgcca tgcctggcag atgcgccgcc ccgccggccc cggcgatgat gatttttatc
     1321 ccccgcgcct cggcggagga ggcatattca aaaagccgct tcggcgtccg gtgcgctgat
     1381 accaccttcg cctcgtatgg cacgccaagc ttgtccagca tctgcgccgc atgttccatc
     1441 acgggccagt ccgaacggct gcccatgata atactcacct gtggcttgct catgccgtgc
     1501 ggtccggaat cagccggctt tccagccgcg caatctcgtc cttgaggcca agcttgcgct
     1561 tcttcaaccg ctgcacctga agctggtcca ctggcccatg ctcggtgatc cgggcgataa
     1621 ccgtgtccag atcccggtgc tcgctgcgca aggcatgcaa gcggcgcagc agattgtctt
     1681 tgtcagtcag catggacgga gcatttagag ggaaaatcgc cgtcctgaaa ccgaaatttt
     1741 agccaccggc catgattcgc gaggatttgc tgcgcctgtg gcaggacgcc acagcccgcc
     1801 cggcgagcca gccaaaagac agcggcgctc gccgattttt aaggtgacat ttccgtggca
     1861 ccgggattag cctttcaggt ctgggccaag cccgctctcg aaggggcatg cccaggcttt
     1921 gac
//
LOCUS       DASQCV010000610         1840 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2949222, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000610 DASQCV010000000
VERSION     DASQCV010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2949222"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..436)
                     /locus_tag="VEQ16_09380"
     CDS             complement(<1..436)
                     /locus_tag="VEQ16_09380"
                     /EC_number="2.3.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0071972 - peptidoglycan L,D-transpeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0018104 - peptidoglycan-protein
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HYP64088.1"
                     /translation="MTKLRQLIWMSVAVIGLMLPTLPSYAQQQDTGDEPGLVADEGYQ
                     LDPEWQKQMVLYRTTEAPGTIIVSTAERHLYLIQPGGRAIRYGIGVGRDGFQWQGLLN
                     ITKKAEWPDWTPPPEMIARQPYLPRFMAGGPGNPLGARAMHLG"
     gene            complement(581..703)
                     /locus_tag="VEQ16_09385"
     CDS             complement(581..703)
                     /locus_tag="VEQ16_09385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64089.1"
                     /translation="MRRPRSLAQKLLWFLALWLMGVASVALLSLLMHLWLVERI"
     gene            complement(703..1704)
                     /gene="cydB"
                     /locus_tag="VEQ16_09390"
     CDS             complement(703..1704)
                     /gene="cydB"
                     /locus_tag="VEQ16_09390"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005106828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016682 - oxidoreductase activity, acting
                     on diphenols and related substances as donors, oxygen as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HYP64090.1"
                     /translation="MIDIATIWAFIIAFAVFVYVVMDGFDLGLGILFPLFPAKADRDV
                     IMNSVAPVWDGNETWLVLGGGGLMAAFPLAYAVLMPALYTPVIAMLIGLIFRGVAFEF
                     RWRSEGRRNLWDLAFAGGSLLAALAQGIALGAILQGVHVEGRQYAGGWWDWLTPFSIL
                     TGLSLAAGYALLGATWLVLKTEDRLRERAYHLCWYLLFAMLGAIGAVSIATPFLHIQY
                     AERWFAWPNLIFTAPVPIAVACTGVLLMRSLIERQDQRPFFLSLVLFALSYAGLGVSM
                     YPYIVPQSITIWQAAAPANSQTFMLVGVAVLIPLILAYTALAYWVFRGKVRAGSGYH"
BASE COUNT          380 a          559 c          588 g          313 t
ORIGIN      
        1 tgccgagatg catggcgcgg gcgccgagcg gatttccagg gccgccggcc atgaaacgcg
       61 gtagataggg ctgtcgcgcg atcatctcgg gtggcggcgt ccagtccggc cattcagcct
      121 tcttggtgat gttcagaagc ccttgccact gaaacccgtc gcggccgaca ccgatgccgt
      181 agcggatcgc gcgtcctccg ggctggatca gatagagatg gcgctcggcg gtggaaacga
      241 tgatggtgcc aggtgcttcc gtggtgcggt aaagcaccat ttgcttctgc cattcgggat
      301 cgagctggta gccttcatcg gcgacaagcc cgggctcgtc gccggtgtcc tgctgctgcg
      361 cgtagcttgg caaggtcggg agcatcaggc cgataacggc caccgacatc cagatcaatt
      421 ggcgaagctt cgtcatttgc aaaactctcc tcgtggcgcg cggctggttt gtatcatcag
      481 tttgccaaat cactaaagcg caacgggtgg ggtcggatcg ccttatggca agttcaaggc
      541 gaacgcgccc taaattcctt gattttctgt catttggcgg tcaaatccgc tccactagcc
      601 agaggtgcat gaggagggag aggagggcaa cgctggcgac gcccatcagc cacagcgcca
      661 gaaaccacag gagtttttgc gccagcgatc gaggccttcg catcagtggt agccgcttcc
      721 ggccctgacc ttgcctcgga atacccaata ggccagggcg gtgtaggcaa ggatcagcgg
      781 aatcagcacg gcgacgccga ccagcatgaa tgtctggctg tttgccggcg cggccgcctg
      841 ccagatggtg atgctttgcg gcacgatata gggatacatg ctgacgccca ggcccgcata
      901 ggacagggcg aacaggacaa gcgacaggaa gaacggccgc tggtcctgcc tctcgatgag
      961 gctgcgcatc agcagcacgc cggtacaggc gactgcaatt ggtaccggcg cggtgaagat
     1021 caggttgggc catgcaaacc agcgttcggc gtattggatg tgcaggaagg gtgttgcgat
     1081 gctgaccgcg ccgatcgcgc ccagcatggc aaacagcagg taccagcaca ggtgataggc
     1141 gcgctcgcgc agtctgtcct cggtcttcag cacgagccat gtcgcgccga gcagcgcata
     1201 gcctgcggca agcgacagcc cggtcaggat gctgaagggc gtcagccagt cccaccagcc
     1261 tccggcatat tgccgtccct cgacgtgcac gccctgcagg atcgcaccga gcgcaatacc
     1321 ctgcgccagc gccgcaagca gcgatccgcc ggcaaaggcg aggtcccaga gattgcgccg
     1381 gccttcgctg cgccagcgga attcgaaggc gacgccgcgg aagatgaggc cgatcagcat
     1441 ggcgatgaca ggcgtataca aagccggcat cagcaccgca taggcgagcg gaaatgccgc
     1501 catcaaccca ccacccccga gcaccagcca ggtttcgttg ccgtcccaga ccggcgccac
     1561 gctgttcatg atgacgtcgc gatcggcttt cgccggaaaa agcggaaaca ggatgccgag
     1621 cccgaggtcg aaaccgtcca tcaccacata gacgaacacg gcaaaggcga tgatgaaggc
     1681 ccagatggtt gcgatgtcga tcaagccggt catctcagat aactccccac ggcgggagta
     1741 atgccggcgg cgacggtggg cttgtcgcgg cttgggcctg cttcacccgg atgcggcggc
     1801 tgcgccatca gccgcagcag ataaatcact cctgcggtaa
//
LOCUS       DASQCV010000611         1807 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1954327, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000611 DASQCV010000000
VERSION     DASQCV010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1954327"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..952
                     /locus_tag="VEQ16_09395"
     CDS             <1..952
                     /locus_tag="VEQ16_09395"
                     /inference="COORDINATES: protein motif:HMM:NF013652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP64091.1"
                     /translation="SGYLLPTLVSAVQARRHSARTKADIAIFCLDAPVGVNRLFTNIC
                     AGEGISLISIRRDEIDGANAMLARLFLGRLLPAHYEQFLYIDGDTQIAGSLDPLLDYP
                     VPRGQFLAASDPMVFATAWPDRHGREIAAYFSSLGISPQHQHLYFNTGVLRVNRNGWD
                     EIGMEAWRLFKTYRERSRFPDQDALNLAGMARRIPMSLAWNFPIFMLNAGVRERIVPR
                     ISHFMGSPKPWHGSFLPWDASAHQPYVDIITKYPDLAPYLPVMSPPRKVRYVFQQHFK
                     RGLETLTWAWNARRDRILAYEESVNCLADRPGFGSAALPA"
     gene            complement(982..>1807)
                     /locus_tag="VEQ16_09400"
     CDS             complement(982..>1807)
                     /locus_tag="VEQ16_09400"
                     /inference="COORDINATES: protein motif:HMM:NF012925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycoside hydrolase family 16 protein"
                     /protein_id="HYP64092.1"
                     /translation="LRAVLTIAIIALGTLPQGSSAAQDTAVSATGPALDLSGYKLTFD
                     EDFKTLDISAHGPDSVWTAHTPWNGDFGDAAFGNPGPDGPFSLNAAGLLITATKKANG
                     QWVSGLISSVDKDGPGQHGFSQEYGYFEMKAILPSGPGTWPAFWLIGTDKSKTSSEID
                     VIEYYGDFPKYYHTTEHVWLGGGKHKLLRAQLVQVQDGSLSSGYNTFGVLITPETTSF
                     YLNRREYWATPTPPEYKQPMYILANLALGGGWPIAKLTSPQVMQIAYIRVYQKPSP"
BASE COUNT          319 a          544 c          544 g          400 t
ORIGIN      
        1 ttcgggttat cttttgccga cattggtcag tgccgtgcag gcgcgccgcc atagcgcgcg
       61 gaccaaggct gatattgcca ttttctgtct ggatgcaccg gttggcgtga atagattgtt
      121 cacgaacatt tgcgcgggcg aggggatctc cctcatctcc atccgccgcg atgagataga
      181 tggcgccaat gcgatgctgg cgcggctgtt tctcggccgc cttttgcccg cgcattatga
      241 gcaatttctc tatatcgatg gcgatacgca aatcgcggga tcgctcgacc cgcttctgga
      301 ttatccagtg ccgcgcgggc aatttctcgc cgccagcgac ccgatggtgt tcgccaccgc
      361 ctggccggac cggcatgggc gcgagattgc cgcctatttc tcatcgctcg gcatttcgcc
      421 gcagcatcaa catctctact tcaataccgg cgtgctgcgc gtcaaccgca atggctggga
      481 cgagatcggg atggaggcct ggcggctttt caagacctat cgcgagcgct cgcgttttcc
      541 cgaccaggac gcgctgaatc tcgcgggcat ggcgcggcgc attcccatgt cgcttgcctg
      601 gaattttccc atcttcatgc tcaatgccgg cgtcagggag cggatcgtgc cgcgcatcag
      661 ccatttcatg ggtagcccca agccctggca tggcagcttc ctgccctggg acgccagcgc
      721 gcatcagcct tatgtcgata tcattacgaa atatccggat cttgcccctt atcttcccgt
      781 catgtccccg ccccggaagg tccgttatgt tttccagcaa catttcaagc gcggcctgga
      841 aactctgaca tgggcctgga atgcccggcg cgaccgcatc ctggcctatg aggagagcgt
      901 gaattgcttg gcggacaggc ctggcttcgg ctcagccgcc ttgcccgcct gagcaactcg
      961 ataaaatatc gggatgaaat gtcagggcga tggtttctga tagaccctga tataggcgat
     1021 ctgcatcact tgcggcgagg ttagcttggc aatcggccag cccccgccca gagcgagatt
     1081 ggcgaggata tacattggct gcttgtattc cggcggcgtc ggcgttgccc aatattcgcg
     1141 ccggttcagg tagaagctcg tcgtctcggg tgtgatcagc acgccgaatg tattgtagcc
     1201 cgatgacagg ctgccgtcct gcacctgcac cagctgggcg cgcagcagct tgtgcttgcc
     1261 gccccccagc cagacatgct cggtggtatg ataatatttc gggaaatcgc cgtaatattc
     1321 aatcacgtcg atttccgagg aagtcttgct cttgtccgtg ccgatgagcc agaaggccgg
     1381 ccaggtgcca gggccgctgg ggagaatggc cttcatttcg aaatagccat attcttgcga
     1441 aaacccgtgc tgacccggcc cgtccttgtc caccgagctg atgagccccg agacccattg
     1501 gccattggct tttttcgtgg ccgtgatgag aagccccgcc gcgttgagcg agaatggtcc
     1561 gtccggtccg ggattgccga aggcggcgtc gccgaaatcg ccgttccagg gcgtgtgcgc
     1621 ggtccagacg ctgtccggtc catgggcgga gatgtccagc gttttgaaat cctcgtcgaa
     1681 ggtcagctta tagccgctga gatcgagcgc cggcccggtg gcggacacgg ccgtgtcctg
     1741 cgcggcactg ctgccctgcg gcaaggtgcc cagcgcgatg atggcaatag tcaggacagc
     1801 gcggaga
//
LOCUS       DASQCV010000612         1775 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2784698, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000612 DASQCV010000000
VERSION     DASQCV010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2784698"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..234)
                     /locus_tag="VEQ16_09405"
     CDS             complement(<1..234)
                     /locus_tag="VEQ16_09405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64093.1"
                     /translation="MTYRFSDSPSRRVRRWEHRRSRSSAPWFVRPLIILFAFALLAVL
                     TFRGVEYAWRTRHGSARTNPAVYESAPSGSLAAT"
     gene            complement(473..1279)
                     /locus_tag="VEQ16_09410"
     CDS             complement(473..1279)
                     /locus_tag="VEQ16_09410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64094.1"
                     /translation="MRGGAQPTTHFISIDEAAASGARVARPPVEPRGIGNPLGASTAL
                     RGSSFATSNAMRTRPFVAQFVGAPPHVPPFRQRIFFPGFGFGGCFGPFFFGCGGFFVP
                     GFGFGLGFWGPGYYCDPFWGCPAGFYGSYYNGGYYGDQIYNQSTDESSVSNEFNPSRY
                     WVSAPPEETGGGGGASAASSDTEVVLFLKDGTVYAITDYWVADNKLHYVTNYGGENSI
                     PLDQLDMQRTVDVNTKRGINITLRPSPQQAAPEAPPDTPPAPPNPPARQR"
     gene            1454..>1775
                     /locus_tag="VEQ16_09415"
     CDS             1454..>1775
                     /locus_tag="VEQ16_09415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64095.1"
                     /translation="MATAAESATVTSAEASAGMATAPAAVLSEGWMRSESEKRGEKRR
                     GQKTRKGMIAVIYAEATAIDCAVIRTAWPVGHFTLLARRRSEGEPTTIGGFYSIGRGC
                     ARIGC"
BASE COUNT          343 a          514 c          623 g          295 t
ORIGIN      
        1 cgttgcggca aggctgccgg agggcgcgct ttcgtacacc gccggattgg tgcgcgcgct
       61 gccatggcgg gtgcgccagg catattcgac gccgcgaaat gtgagcaccg cgagcagagc
      121 gaaagcgaac aaaatgataa gcgggcgcac gaaccagggc gcgctggatc ggctgcggcg
      181 gtgttcccag cggcgcacgc gtcggctagg tgaatcggag aaacggtagg tcatgtgatg
      241 ttgcggcgcg cggcgcgacg tgcgccgatt gcacatgaaa gtatacgcga ccccaccccc
      301 gattcggtta cagatgcagg cgcgatcaca aaatcagcag gacagacctg gagcctttca
      361 agaatacgta tgacaatggc cgacacgcag ggtctcccac gggctgcggg agtggcacca
      421 tgcaaacata ttgttgccgc aaattgcagt tatcgcgagt tctactagcg gattaccgtt
      481 gccgagctgg tgggtttggc ggagccggcg gtgtgtctgg aggtgcctca ggcgcggcct
      541 gttgcggcga tgggcgcagg gtgatgttga taccgcgttt ggtgttaacg tctacggtgc
      601 gctgcatgtc gagctggtcg agggggatgg aattttcgcc gccgtagttg gtgacgtagt
      661 ggagcttgtt gtcagcaacc cagtagtcgg tgatggcgta gacggtgccg tctttcagga
      721 atagcaccac ttcggtgtcg ctcgacgcgg cgctagcgcc tccgccaccg ccggtttctt
      781 cgggtggcgc cgatacccag tagcggctgg gattgaattc gttcgagacg ctgctctcgt
      841 cggttgactg gttgtagatc tgatcgccgt agtagccgcc gttgtagtag ctgccgtaga
      901 agcctgccgg gcagccccag aagggatcgc agtagtagcc gggtccccag aagcccaggc
      961 cgaaaccgaa gccggggacg aaaaatccgc cgcagccgaa gaagaatgga ccgaagcagc
     1021 cgccgaaacc gaagccagga aagaaaatcc gctgccgaaa tggcggcacg tgaggcggcg
     1081 cgccgacgaa ctgcgccacg aaggggcgcg tgcgcatcgc gttgctggtg gcaaatgacg
     1141 atccgcgcag ggccgtggag gcgccgagcg ggttgccgat cccccgaggc tcaacgggcg
     1201 gccttgctac gcgcgcgccg gatgcggcgg cttcgtcgat ggaaatgaaa tgagtggtgg
     1261 gctgggcgcc gccgcgcatc gcagtgctcg gaggagcctg ccacgtgctg ccgccgatga
     1321 agcgggagga cggggccgaa tgcgcggcgg aatttgttgc gccgccgctg gcagaattgc
     1381 ctgaagacga cccgccgtaa cttccacgcg gcgccgatgc gccaccgccg cgagacgctg
     1441 acccgccgct ggcgtggcca ccgccgccga atccgccacc gtgacttccg ccgaagcctc
     1501 cgccggcatg gccaccgccc ccgccgccgt gttgagcgaa ggctggatgc ggagcgagag
     1561 cgagaagcgc ggcgaaaaaa ggcgcggcca gaaaacgcga aaagggatga ttgccgtgat
     1621 ttatgcggag gcgactgcca tcgactgcgc tgtgatccga actgcctggc ccgttggtca
     1681 tttcaccctc ctcgcccgcc ggaggagcga aggagaaccc accacaattg gaggattcta
     1741 tagcattgga cgcgggtgcg cacgcattgg ttgca
//
LOCUS       DASQCV010000613         2485 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3280895, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000613 DASQCV010000000
VERSION     DASQCV010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2485
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3280895"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..320)
                     /locus_tag="VEQ16_09420"
     CDS             complement(<1..320)
                     /locus_tag="VEQ16_09420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64096.1"
                     /translation="MNQQPRPGGDAPHTLPPRPHLDHLRNEAKARLKQMRQSDPGAKL
                     TSAQLAVARDYGFSSWRRLRAHLAGNAAPPPPDDEIARHLYDQSRPREEVAINPALLA
                     DYVG"
     gene            515..1060
                     /locus_tag="VEQ16_09425"
     CDS             515..1060
                     /locus_tag="VEQ16_09425"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP64097.1"
                     /translation="MEQDIAALVREMKDRQDIYDCIMRYCRGVDRLDRELTMSAYHAD
                     GIDDHGPYVGPREGFWDYVMDVHGKKQERTLHHVTNHYCELDGDVAHAESYFLFYSLN
                     REAPLYTLVSGRYIDRFEKREGRWGIAERICVVDVRNEAWAPTGHEGDELYMQIHRGK
                     EDPSYMRPLHVDRARFTGPWR"
     gene            1087..1878
                     /locus_tag="VEQ16_09430"
     CDS             1087..1878
                     /locus_tag="VEQ16_09430"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HYP64098.1"
                     /translation="MRFPFSHPKIPVLALRGIIAARPGMINFDAYAPLIERGFQLAKK
                     SGNLILAIESPGGSAAQSDLLGQAIRRAAEEHKIAVTAVIGDTGASGGYWLACAADRI
                     LANRLSIVGSIGVVTGGFGLDEFIARHGIARRVYTAGENKRRGDMFAPERPEDVAFTR
                     ELLDEAHEMFKGWVRERRGDRLTGEEGQVFDGGYMLGKRALALGLVDGYGDVPGVVKE
                     LGGDKAKAVWLRPRRARGLLRLFTQSAVESALDEAEQRLAARTLQ"
     gene            1889..2401
                     /locus_tag="VEQ16_09435"
     CDS             1889..2401
                     /locus_tag="VEQ16_09435"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP64099.1"
                     /translation="MSVTADLATSLTARHTAPGDAETLLQMCRDFHVEDGSPLDEAGE
                     ATIAHVCAGEKLAPAYMLEHDGRPAGFFILTLGYSVENGGMDGFIDDIYLLPEYRGRG
                     LGRRAVALAIEAAREVGIRALLLEVESHNDRAYSLYRKMGFNDTKRRLLRQVIALDEG
                     QDGGQDEGQT"
BASE COUNT          415 a          681 c          927 g          462 t
ORIGIN      
        1 tggccaacat aatccgccag cagcgcggga ttgatggcca cctcctcacg tggccttgat
       61 tggtcgtaga ggtggcgggc gatttcgtcg tccggcgggg gtggtgccgc gtttccggcg
      121 agatgcgcac gcaggcggcg ccagctggag aaaccgtaat cgcgcgcgac ggcgagctgc
      181 gccgatgtga gttttgcgcc cggatcggac tggcgcatct gcttcaggcg cgctttggct
      241 tcattccgga gatggtcgag atgggggcgg ggcggcaggg tatgtggtgc gtccccgcct
      301 gggcgtggct gctggttcat tggaatcctt ccttccagaa tgcccgttgt ccgcgtcccg
      361 ggcaggaagt caggggtcat tggttcagtc tggtgattgg gctaagccct ttacgcggac
      421 cgtaggctta tcaggaagcc gctggaaaga ttacaccgcg ttggctggtt tgcaaggcga
      481 atctgggctg gcggaacggg ggaggagcaa aagcatggaa caggacatcg cggcgctggt
      541 gcgggagatg aaggaccggc aggatattta tgactgcatc atgcgctatt gccgcggcgt
      601 ggaccggctg gaccgcgaat tgacgatgtc ggcctatcat gcggacggga ttgatgatca
      661 tgggccttat gtcggcccgc gcgaggggtt ctgggattat gtgatggatg tgcatggcaa
      721 gaagcaggag cgcacgctgc atcatgtcac caaccattat tgcgagctcg atggcgatgt
      781 ggcgcatgcg gagagctatt tcctgttcta cagcctgaac cgggaggcgc cgctctacac
      841 cttggtctcg gggcgctata tcgaccgttt cgagaagcgc gaggggcgct gggggattgc
      901 cgagcgcatc tgcgtggtgg atgtgcgcaa cgaggcctgg gcgccgaccg gccatgaggg
      961 cgatgagctc tacatgcaga tccatcgcgg caaggaagac ccgtcttaca tgcggccgct
     1021 gcatgtggac cgcgcccgtt tcaccgggcc gtggcgctga acgggaaagc gggctagcct
     1081 gggcgcatga gatttccctt ctcgcatccc aaaatcccgg tcctggccct gcgcggcatc
     1141 attgcggcgc ggccgggcat gatcaatttc gatgcttacg cgccgcttat cgagcgcggg
     1201 tttcagctgg ccaagaagag cggcaatctc atcctggcca ttgagagccc tggcgggtcg
     1261 gcggcgcagt cggatttgct cggccaggcc atacggcgcg cggcggagga gcataagatc
     1321 gcggtgaccg ccgtgatcgg cgatacgggc gcctcgggcg gctattggct ggcctgcgcg
     1381 gcggaccgga ttcttgccaa ccggctgtcc attgtcggtt ctatcggtgt cgtcacgggc
     1441 gggttcgggc tggatgagtt catcgcccgg catgggattg cgcggcgcgt ctatacggcg
     1501 ggggagaata agcgccgggg tgacatgttc gcgccggagc ggccggagga tgtggcgttc
     1561 acccgcgagc tgctcgacga ggcgcatgag atgttcaaag gctgggtgcg cgagcggcgc
     1621 ggcgaccggc tgacgggcga agagggacag gtgttcgacg gcggctatat gctgggcaag
     1681 cgcgccctcg cgctggggct ggtcgatggc tatggcgatg tgccgggcgt ggtgaaggag
     1741 ctgggcggcg acaaggccaa ggctgtgtgg ctgcggccgc gccgggcgcg ggggctgctg
     1801 cggctgttca cgcaatcggc cgtggagagc gcgctggatg aagcggagca gcgcctcgcg
     1861 gcgcggacat tgcaatgaac gtgatgcaat gagcgtgacg gcagatctgg ccacgagcct
     1921 gaccgcgcgc cacaccgcgc cgggcgatgc tgaaaccctg ctgcaaatgt gccgggattt
     1981 tcatgtggaa gatggctcgc ctctggacga agccggggag gcgaccattg cgcatgtttg
     2041 cgccggcgag aagctcgcgc cggcctatat gctggaacat gacggcaggc ccgccgggtt
     2101 tttcatcctc acgctcggct atagcgtcga gaatggcggg atggatgggt tcattgacga
     2161 tatttatctc ctcccagaat atcgcgggcg ggggctgggg cgcagggccg tcgcccttgc
     2221 catagaggcg gcgcgcgagg tgggcatccg cgccctcctg ctggaagtcg aatcccataa
     2281 tgaccgtgcc tacagcctgt accgcaagat gggcttcaac gacacgaagc gccgcttgct
     2341 gcgccaagtg attgcgctgg acgagggtca ggatgggggc caggacgagg gtcagaccta
     2401 gtccgtgagc gccagggcct ggggtagtgg ccgccgcgcc tgggccagcc agggcaggat
     2461 gtcggtctca ggcatgggcg ggctg
//
LOCUS       DASQCV010000614         5661 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2784779, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000614 DASQCV010000000
VERSION     DASQCV010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5661
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2784779"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..514)
                     /locus_tag="VEQ16_09440"
     CDS             complement(<1..514)
                     /locus_tag="VEQ16_09440"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYP64100.1"
                     /translation="MQSGQIIIVNGTSGSGKSTTCELLAKQSEEFWLLYGIDHFLAGT
                     LPAKFGHHGPRCREGIYAHPQNEAEPDGPLRWSFGPYGTRAFATLHEWVASASRQGCN
                     IILDHLMMIDPPVLQDAIWRMEGLPVLLVTLRPPFEVLEQRLKQRVYDKKLPTDILGS
                     ETVRIITDRLN"
     gene            complement(527..1471)
                     /locus_tag="VEQ16_09445"
     CDS             complement(527..1471)
                     /locus_tag="VEQ16_09445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64101.1"
                     /translation="MNDLPMADRFSDDRSESPYWNESVWFSISKPEEKIHGFVQYYFR
                     PNMGMLNGGPVLWDPSGNFQWNCLYYNWSHLQALPPGAEKFNMTARNSLSVKVLVPLT
                     RYAISYDKDGVKLDLIWEAIGPVHELKTGDSGQQKTAKFHIEQPGRMNGTITIDGRRI
                     EIDCFSMRDTSFGTREYESLASGGYFWGIAASSSFHAIAMGEGEEQRVIGGYIYKDGE
                     LASLASGTRKVVEFGKYGPKRVVFEATDKASRSMKATGVLEDGLIFTGYTDHTVVWSL
                     ISWEWDGAEHWGDNQEFAPLTRFRDIARGVTPAGHKKQ"
     gene            complement(1503..1934)
                     /locus_tag="VEQ16_09450"
     CDS             complement(1503..1934)
                     /locus_tag="VEQ16_09450"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP64102.1"
                     /translation="MEPLQRLVAIEEIRLLKARYFRFMDTKQWDELASLFTPDMRVLT
                     PKGDVHVQGGAAFATSLKHSLQHSVSVHQGFMGEIEILDEDNATGIWAMQDVIEWEDK
                     HPVQGWKSITGRGHYHETYRKYEGAWRIATLTLTRVRLDIV"
     gene            complement(2115..3083)
                     /locus_tag="VEQ16_09455"
     CDS             complement(2115..3083)
                     /locus_tag="VEQ16_09455"
                     /inference="COORDINATES: protein motif:HMM:NF025878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HYP64103.1"
                     /translation="MTSANHERRRHEFRGKNNSDYYEGELRALSPRDVDMRIEKSVAG
                     EYCIYKLTSRSGLVFRRSWAHIRSDKTNVTVFWFLRRGRITVSSPGVKHEISPQECAV
                     TRSCRPFNMELTPDKNGLLEVMHVVVPSHELHSIISDGLEAGRPFPTSKGDLFLAERI
                     FTLLFDEDDQIDADISEQLVRTLLTGLGKSIAKFGGQPAPRSSIAEKRIADIKNCISR
                     HIANPDLNARMVAERCGISLRYLCHILKKNDLSFSNLIWERRIDMAEAWLKDPAMQHH
                     LVCEIAYLVGFKSSAHFSRMFKTRFGVAPREYRDLHLAKPALEAAS"
     gene            complement(3272..3583)
                     /locus_tag="VEQ16_09460"
     CDS             complement(3272..3583)
                     /locus_tag="VEQ16_09460"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HYP64104.1"
                     /translation="MASEFTRAARLDDLPHGAKQVVEINGKPVLLCNWNGKIFAVSNI
                     CSHAEEKLDCGRLGNGWIACPIHGARFELATGKAKNPPAKQPIPVYEVRLSEGWIEVA
                     A"
     gene            3805..4014
                     /locus_tag="VEQ16_09465"
     CDS             3805..4014
                     /locus_tag="VEQ16_09465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64105.1"
                     /translation="MRQNTRRQAPGKRAEDKADLSVAAGGYLDLGMVVTVYHASSAVP
                     APPGSAAEGVASFMLNDAGPCVTEH"
     gene            4049..>5661
                     /locus_tag="VEQ16_09470"
     CDS             4049..>5661
                     /locus_tag="VEQ16_09470"
                     /inference="COORDINATES: protein motif:HMM:NF014585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HYP64106.1"
                     /translation="MSYELNAKLAAARPPLPAGANVDPVTAAIIRGAFETICFEAATH
                     LGRAASSPIINSSNERNAAIVDANGRLAMGAIGTPHLTFVNQMMVRWALMNLEEYDIG
                     PGDVLLSNDPEYGGGHLPDYCVYAPVFDDKGELILFQTLQAHQGDTGGKDPGGFTLEA
                     TDIYTEGVSYPCVKLVHRGQKRMDVVRMIERNNRFATFAGDLAAMIGGVQQAAVKLQD
                     MIHKHGSDVVKAATNHAIAHSEKRMREEVSHWPDGSYEATVLLDHDTAGTRDIKVHVT
                     CTVKGDQLTVDLTGTDDRKDLVGVWNTFANSRSYVMTQVGAAIDPSIDKNEGLFNAVD
                     IIIPAGCIAQPPPGKPAALGSFHPACEITEAVCLALSQVVPERAAPQLYKIGMPNAVM
                     GFDANGMMWMDQGVDCRSMDASAVQGIDGWGSCPVSLGNLLLSEAEDAEMRFPILNVS
                     REMKTDGGGAGQWRGAPGSLNVKTVLAPTMAVAWMVSADHPLRGMCGGDDAIPYTNHF
                     EVGSPNERKIERTAQAQLPAGATIAYQHGG"
BASE COUNT         1118 a         1792 c         1647 g         1104 t
ORIGIN      
        1 ggttgagccg gtcggtgatg atgcgcaccg tctccgagcc gagaatatcg gtgggcagct
       61 tcttgtcgta gacacgctgc ttcaggcgct gctccagcac ctcgaaaggc ggcctcagcg
      121 tgaccagcag cactggcagc ccttccatcc gccagatggc atcctgcagc accggtgggt
      181 cgatcatcat cagatggtcg agaatgatgt tgcagccctg gcgcgaggcg ctggcgaccc
      241 attcatgcag cgtggcgaag gcgcgcgtgc cgtagggacc aaaactccag cgcaatggcc
      301 cgtccggttc ggcttcgttc tgcgggtgcg cgtaaatccc ctcgcggcag cgcggcccat
      361 gatgcccgaa tttggcgggc agcgtgccgg cgaggaaatg atcgatgccg taaagcagcc
      421 agaattcttc gctttgtttc gccagcaact cacatgttgt ggatttgccc gaccccgacg
      481 tgccgttgac gatgatgatc tgtcctgact gcaatttttg ctccccttat tgtttcttgt
      541 gccctgccgg agtcacgccg cgcgcgatgt cgcggaagcg ggtgaggggc gcgaattcct
      601 ggttatcgcc ccaatgttcc gctccatccc actcccagct tatgagagac cagacgacgg
      661 tatgatcggt ataacccgtg aaaatcagcc catcttccag cacgcctgtg gccttcatgc
      721 tgcggctggc cttgtcggtg gcctcgaaaa ccacgcgctt cggcccgtat ttgccgaact
      781 ccaccacctt gcgcgtgccg gaggcgaggc tggccaactc gccatccttg tagatgtaac
      841 caccgatcac gcgctgttct tctccttcgc ccatggcaat ggcgtggaag gagctgctgg
      901 cggcgatgcc ccagaaataa ccgccgctcg ccagcgattc atattcgcgc gtgccaaagg
      961 aggtgtcgcg catcgagaag caatcgatct cgatcctgcg cccatcgatg gtgatggtgc
     1021 cgttcatccg ccccggctgc tcgatatgga atttcgcagt cttctgctgc ccggaatcgc
     1081 ccgtcttcag ctcatgcacc ggcccgatcg cctcccagat gagatcgagt tttacgccgt
     1141 ccttgtcata ggaaatggca tagcgcgtga gcggcacgag cacttttacg ctgagcgaat
     1201 tgcgcgccgt catgttgaat ttctcagcgc caggcggcaa agcctgcaga tggctccaat
     1261 tataataaag gcaattccac tggaaattcc cgctcgggtc ccacagcacc ggcccgccat
     1321 tgagcatgcc catattgggg cggaaataat attgcacaaa cccgtggatt ttttcctccg
     1381 gcttggaaat ggagaaccag acgctctcat tccagtacgg gctttcgctc cgatcgtcgg
     1441 aaaaccggtc ggccatcggc aaatcattca tggcttattc cattccttaa aaaaaacaaa
     1501 aatcaaacaa tatccagccg cacccgcgtg agggtcaggg tggcgatacg ccaggccccc
     1561 tcatatttgc ggtaggtttc atgataatgg ccgcgcccgg tgatggattt ccacccctgc
     1621 accggatgtt tgtcctccca ctcgatcaca tcctgcatcg cccagatgcc cgtggcattg
     1681 tcctcatcaa gaatctcgat ctcgcccatg aagccctgat gcacggacac gctatgctgc
     1741 agcgaatgtt tcaggctggt ggcaaatgcc gcgccgcctt gcacatgcac atcccccttg
     1801 ggcgtgagca cgcgcatatc cggcgtgaag agcgaagcca gttcatccca ctgcttggta
     1861 tccatgaaac ggaaatagcg cgccttcagc aacctgatct cttcaatggc gaccaggcgc
     1921 tgcagcggct ccatggattt ttccccggta cgcgaatggc ttttcaggta atcggcgcca
     1981 gcatcgctgc cggcgtgccg ggcaaaaatt tgccgccgcg gcgcgggcgc gtaaagaggg
     2041 gagggggcgc attgcacctg cagtcatcat ggcatgccac gcccggcgca tcatcggcgc
     2101 gccggcggcg ccgctcagga cgccgcctcg agggccggct tggccaggtg caaatcgcga
     2161 tattcgcgcg gtgccacgcc gaagcgtgtc ttgaacatgc gagagaaatg cgcgctgctc
     2221 ttgaacccga ccagataggc gatctcgcac accagatgat gctgcatcgc cgggtccttc
     2281 agccaggcct cggccatatc gatgcgccgc tcccagatga gattcgagaa ggagagatcg
     2341 ttcttcttga ggatatggca gagatagcgt agcgaaatgc cacagcgttc cgccaccatg
     2401 cgcgcattca gatccgggtt ggcgatatgc cggctgatgc agttcttgat gtcggcaatg
     2461 cgcttctccg caattgagct gcgcggcgcc ggctgcccgc cgaacttggc gatggatttg
     2521 ccgagcccgg tgagcagcgt gcgcaccagc tgttcggaaa tatccgcatc aatctggtca
     2581 tcctcatcga acagtagcgt aaaaatccgc tcggcgagga agaggtcgcc cttggaggtg
     2641 gggaagggcc ggccagcctc cagcccgtcg ctgatgatgg aatgcagctc atgcgagggc
     2701 acgaccacat gcatcacttc cagcaacccg ttcttgtccg gcgtcagctc catgttgaag
     2761 gggcggcagg agcgcgtcac ggcgcattcc tgcgggctga tctcatgctt cacgccgggg
     2821 gaggaaacgg tgatgcgccc gcgccggagg aaccagaaca cggttacatt ggtcttgtcc
     2881 gagcgtatat gtgcccagga gcggcggaag acgaggccgg agcgcgaggt gagcttgtag
     2941 atgcaatatt cgccggccac gctcttttcg atacgcatgt cgacatcgcg cggcgagagc
     3001 gcccgcagct cgccttcata gtaatcgctg ttgtttttgc cgcgaaactc atggcgccgc
     3061 cgctcatggt tcgcgctcgt catgtcaaaa gccagtacgg gcaaaggccg ttctccttcc
     3121 gcaggcgcct tgttccgcag gtgcctttac agatgtaaca gtctaagcca ggcaggacag
     3181 gcggacaagg taaaaggtgt aaaatcgctt gtacgatgag gagcgcgagc cctaacggct
     3241 tgttcataaa ctaggtcggc gtacctccac cttacgccgc tacctcgatc cagccttcgc
     3301 tcaaccgcac ctcatagacc ggaatcggct gcttggcagg cgggttcttg gccttgccgg
     3361 tggccagctc gaagcgcgcc ccatggatcg ggcaggcgat ccagccattg cccaggcgcc
     3421 cgcaatcaag cttctcttcg gcatgggagc agatattgga gacggcaaaa atcttcccat
     3481 tccaattaca tagcagcacc ggcttgccgt tgatctccac cacctgcttg gcgccatgcg
     3541 gcaggtcgtc cagccgcgcg gcgcgtgtga actcagaagc cataatccag atacaccctc
     3601 caacccaaaa agctcccaga aggtgcttcg gtccgccatc cttcaatcat aatctggccg
     3661 ccaccacttc tcccgcaacg caccccctct tgccgcagat tgcagcgccc ctcacgcctg
     3721 cttgcggccc cttccggcgg cgcgtagcta ggctgacggc cggcatgccc ctcatgcggg
     3781 ccggtcaggt ttgtggagtg aggaatgcgt cagaatacca ggcggcaagc gccaggcaaa
     3841 cgcgcggagg ataaagccga tctcagcgtc gcggctggcg gctatctgga tctcggcatg
     3901 gtggtgaccg tctaccatgc cagcagcgct gtgcccgctc cgccaggcag cgccgccgag
     3961 ggcgtggcca gcttcatgct caatgatgcc ggcccctgcg tcaccgaaca ttgagccgtt
     4021 aatcagactg ccaggaggat gctccgccat gtcctatgaa ctcaacgcca agctcgccgc
     4081 cgcgcggccg cctctgccgg ccggcgccaa tgtagatccg gtgacggccg ccattatccg
     4141 cggcgcgttc gagacgattt gctttgaggc cgccacccat ctcggccgcg ccgcctcctc
     4201 gcccatcatc aattcctcca acgagcgcaa cgcggccatc gtcgatgcca atggccgcct
     4261 cgccatgggc gccatcggca caccgcatct caccttcgtc aaccagatga tggtgcgctg
     4321 ggcgctgatg aatctcgaag aatatgatat cggcccaggc gatgtgctgc tctccaacga
     4381 ccccgaatat ggcggcggcc atctgcctga ttattgcgtc tacgccccgg tgttcgacga
     4441 taagggcgag ctgatcctgt tccagacctt gcaggcacac caaggcgata cgggtggcaa
     4501 ggaccctggt ggcttcacgc tggaagcaac ggacatttac accgaaggcg tgtcctatcc
     4561 atgcgtgaaa ctggtccatc gcgggcagaa gcgcatggat gttgtgcgca tgatcgagcg
     4621 taataaccgc ttcgccacct tcgccggcga cctcgccgcc atgatcggcg gcgtgcaaca
     4681 ggcagccgta aaattgcagg acatgatcca caagcatggc tcggacgtgg taaaggctgc
     4741 caccaaccat gccatcgcgc acagcgaaaa acgcatgcgc gaggaagttt cgcactggcc
     4801 cgacggatct tacgaagcca ccgtgctgct cgaccatgac acggccggca cgcgcgatat
     4861 caaggtacat gtcacctgca cggtgaaagg cgaccagctc acagttgatc tcaccggcac
     4921 ggatgaccgg aaagatctcg tcggcgtgtg gaacactttt gccaatagcc gctcttacgt
     4981 gatgacgcag gtgggtgcgg ccatcgatcc ctcgatcgac aagaatgaag gattgttcaa
     5041 cgccgttgac attatcatcc ccgccggctg catcgcccag ccgcccccgg gcaagccggc
     5101 cgcgctcggc tccttccacc cggcctgcga gatcaccgag gcggtgtgcc tcgcgctcag
     5161 ccaggtggtg ccggaacgcg ccgccccgca gctctacaaa attggcatgc ccaacgcggt
     5221 gatggggttt gacgccaacg gcatgatgtg gatggaccaa ggcgtggatt gccgctccat
     5281 ggatgcctcc gccgtgcagg gcatcgatgg ctggggttcc tgcccggtca gcctcggcaa
     5341 tcttctattg tcggaagcag aagatgcaga aatgcgcttc cccatcctca atgtcagccg
     5401 cgagatgaaa accgatggtg gcggcgctgg ccaatggcgc ggcgcgccgg gcagcctgaa
     5461 tgtgaagaca gtgcttgctc ccaccatggc cgttgcctgg atggtctctg cggaccaccc
     5521 gctgcgtggc atgtgcggcg gtgacgacgc catcccctac acgaatcatt tcgaagtggg
     5581 ttcgcccaat gagcgcaaga tcgagcgcac cgcccaggcg cagcttccgg caggcgccac
     5641 cattgcctac cagcatggcg g
//
LOCUS       DASQCV010000615         1754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_464470, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000615 DASQCV010000000
VERSION     DASQCV010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464470"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..212)
                     /locus_tag="VEQ16_09475"
     CDS             complement(<1..212)
                     /locus_tag="VEQ16_09475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIA"
                     /protein_id="HYP64107.1"
                     /translation="MIGMVLVTHGTLANAMREAMEHVVGKQKNLATVCIESDAEFESQ
                     RAEIAQRMAEVNEGDGVILLTDMFGGT"
     gene            complement(223..1128)
                     /gene="rapZ"
                     /locus_tag="VEQ16_09480"
     CDS             complement(223..1128)
                     /gene="rapZ"
                     /locus_tag="VEQ16_09480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HYP64108.1"
                     /translation="MMNTPAPQIVLVTGLSGAGKLSILRALEDLGFETVDNPPLEGLQ
                     GLAETAAKNLAIGVDARSRGFSAESVLEMLGRLRQELHLAPTLVYATASDEVLLRRYS
                     ETRRRHPLAQAGAIAEGIALERELTAPLARAADWLLDTSNLPLPRLRQLIEQHFGAHN
                     PGMVLNLVSFSYAAGLPREADLVFDARFLKNPHYEPHLRILSGLDPEVGSFIEQDPDF
                     AIYFYKLLNLIEFLLPRFVQEGKKYATICVGCTGGQHRSVYMVEKLNSHLAKAGWRVG
                     VTHREAATFEAKKRNAHSLASNEKE"
     gene            complement(1125..1559)
                     /locus_tag="VEQ16_09485"
     CDS             complement(1125..1559)
                     /locus_tag="VEQ16_09485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HYP64109.1"
                     /translation="MQLHASCAARANAQGGDAILLLGPPGCGKSDLLLRLIRLGFTLV
                     ADDQVIIEDGLARAPESLAGLLEVRALGIFRLPFLPQARLRLAATLGPAAERLPQPRR
                     HEALDVPEITLDPALPSAPERASLALEAACGRVSQLAGAFAP"
BASE COUNT          346 a          557 c          533 g          318 t
ORIGIN      
        1 gtgccgccga acatgtcggt gagcaggatc acgccgtcgc cctcattcac ctccgccatg
       61 cgctgcgcaa tctcggcgcg ctgactttca aattccgcat ccgattcaat gcagactgtg
      121 gcaagatttt tctgcttgcc aaccacatgc tccatggcct cgcgcatcgc gttggcaagc
      181 gtgccatggg taaccagaac catgccgatc atttgtggag gctcattctt tctcgttcga
      241 tgccagactg tgggcgttac gcttcttggc ctcaaacgtc gcggcttcgc ggtgcgtcac
      301 accaacacgc cagcctgctt tggccagatg ggaattcaat ttctcaacca tataaaccga
      361 tctgtgctgt ccacctgtgc atccgacaca tattgttgca tatttttttc cctcctgcac
      421 gaatcttggt aacaaaaatt cgatgagatt caggagtttg tagaaatata tcgcaaaatc
      481 agggtcttgc tctataaagc tgccaacttc tggatcgagg ccggaaagta tacgcaaatg
      541 tggttcataa tggggatttt tcaggaagcg cgcatcgaat accagatccg cttcccgcgg
      601 caggcctgcc gcataggaga aagacacgag gttaagcacc atgcccggat tatgcgcgcc
      661 gaaatgctgc tcgatgagct ggcgcagccg cggcaaaggc aggtttgagg tgtcgagcag
      721 ccagtccgcg gcgcgggcga gcggcgcggt cagctcgcgc tccagcgcga ttccctcggc
      781 aattgccccg gcctgcgcca aaggatggcg ccgcctcgtt tccgaatagc ggcgcagcag
      841 cacttcgtcc gaagcggtgg catagacaag ggtgggcgcc agatgcagct cctggcgcag
      901 ccgtcccagc atttccagca ctgattcggc cgagaagccg cgcgagcgcg catccacgcc
      961 aatggccaga ttcttggccg ccgtttccgc caacccctgc agcccctcca gcggcgggtt
     1021 atccaccgtc tcgaagccca aatcctccag cgcccgcaaa atggaaagct tgcccgcacc
     1081 cgacaggccg gtgacgagca cgatctgtgg cgccggggtg ttcatcatgg ggcgaaggcc
     1141 ccggccagct ggctcacgcg cccacaggct gcctccagcg ccagggaggc gcgctcgggg
     1201 gcggagggca aggcagggtc gagcgtgatc tcgggcacat ccagcgcctc atggcggcgc
     1261 ggctgcggca ggcgttcggc cgctgggccc agcgtcgccg ccagccgcaa ccgcgcctgg
     1321 ggcaggaagg gcaggcggaa aatccccagg gcccgcacct ccagcagccc ggccaggctc
     1381 tcgggcgccc gcgccagccc atcctcgatg atcacctggt catccgccac cagcgtaaaa
     1441 ccaagccgga tgaggcggag caacagatcc gacttgccgc agcctggcgg gccgagcagt
     1501 aggatggcat cgcctccttg cgcgttggcg cgggcggcac aggatgcgtg cagttgcatg
     1561 atgcccaact gtgacaaaaa acgccgtaag gcggaagggg ttgcagaaca agcggcgcgg
     1621 aggcggcagt cagccgcctt gtatgccgct ttgtatatag cacgaagcgc cggtcaggct
     1681 ggctccggcg cgcggcaatt tatgtgcgaa tctattcatc cgccgccgcc gtccggcaaa
     1741 ggatgaggcg tctg
//
LOCUS       DASQCV010000616         2003 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_794156, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000616 DASQCV010000000
VERSION     DASQCV010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_794156"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..397
                     /locus_tag="VEQ16_09490"
     CDS             <1..397
                     /locus_tag="VEQ16_09490"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HYP64110.1"
                     /translation="EEKKELEGLRVVHSVVAAVREVAKPEDLEPIKRGASHEQPLVWT
                     QKSGRKSMLIGYSADYIVGMSKAEGRALLARLLEWTAQPCFTYSHDWKEGDLAIWDNT
                     RALHRVIPYAADSGRTMNRTSIAGVEETR"
     gene            456..1382
                     /locus_tag="VEQ16_09495"
     CDS             456..1382
                     /locus_tag="VEQ16_09495"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP64111.1"
                     /translation="MRPLRNQCEVAVIGGGLAGLSAACHMARLGRLVTLFEASYMFGG
                     LVATVDEVHGLAVPGKFSGQDLAVHLLDEARKAAVQIIEAGVETIEAGAKLRIVDAEG
                     RDYKPEVIIVASGASLRKLGVPGEEEFLGRGVSRCATCDGGFFRGQDVVVTGSGDAAV
                     EEALVLAKICRRVIMVCRSALKAKREYVDKIASRDNVTFIWDSQIVEVLGEQGVSGVR
                     VRNVKTGAVSDVECSGLFPFIGVAPNTGFLPPALLTNTGYVETAQNYRSAEPRIFAAG
                     AVRKEYGGNILQAMAEGVGAAEAALRQLQQIS"
     gene            1394..1705
                     /locus_tag="VEQ16_09500"
     CDS             1394..1705
                     /locus_tag="VEQ16_09500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64112.1"
                     /translation="MAENLYEVVWPCGERRQKIQPLAKRLDTLNGKKVAQLWDYLFMG
                     DEVFATLEDELRKQYPQVEFVSWREFGNTHTVNERELLASLPQRFKDLGVDAAISAMA
                     C"
     gene            1793..>2003
                     /locus_tag="VEQ16_09505"
     CDS             1793..>2003
                     /locus_tag="VEQ16_09505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64113.1"
                     /translation="MGQAAATSVGLGMPNLPVAMIPGHPGVQSPEELRANVVAVTAWQ
                     VMENLLNQPDVQEMEDDPGSRDIVFR"
BASE COUNT          368 a          528 c          715 g          392 t
ORIGIN      
        1 ggaggagaaa aaggagttgg agggtctgcg cgtggtgcac tctgttgtgg ccgcggtgcg
       61 tgaggtggcg aagccggagg atctagagcc catcaagcgc ggcgcctcgc atgagcagcc
      121 gctggtatgg acgcagaaat ccgggcgcaa atcgatgctg attggctatt ccgcagatta
      181 catcgtcggt atgtccaagg ccgaggggcg ggcgctgctg gcgcggctgc tggaatggac
      241 ggcgcagcct tgcttcacct actcccatga ctggaaagag ggcgatctcg ccatctggga
      301 taatacgcgc gcgctgcatc gcgtgattcc ctatgcggcg gattccggcc gcaccatgaa
      361 ccgcacctct atcgccggtg tggaagagac gcgctaaaaa ggccgcgtgg gcggcggcct
      421 cggccgtcgc cttataagaa taatggggag tgagtatgcg gccattgcgc aaccaatgtg
      481 aagttgctgt catcggcggc ggactggccg ggctttccgc cgcctgccat atggcgcggc
      541 tcgggcggct cgtcaccttg ttcgaggcga gctacatgtt tggcgggctc gtcgccacgg
      601 tggatgaggt gcatgggctg gctgtgccgg ggaaattttc cgggcaggat ctggcagtgc
      661 atctgctgga cgaggcgcgc aaggcggcgg tgcagattat tgaggccggt gttgaaacga
      721 tcgaggccgg tgcgaaattg cgcatcgttg atgccgaggg acgcgattac aaaccggagg
      781 tgatcatcgt cgcgtccggc gcctcgctgc gcaagctcgg tgtgccgggc gaggaagaat
      841 ttctcgggcg tggcgtgtcg cgctgcgcca cctgcgatgg cgggtttttc cgcggccagg
      901 atgtggtggt gacaggcagc ggcgatgcgg cggtggaaga ggcgctggtg ctggcgaaaa
      961 tctgccggcg cgtgatcatg gtgtgccgct cggcgctgaa ggcgaagcgc gaatatgtcg
     1021 acaagatcgc ctcgcgtgac aacgtgacct ttatctggga cagccagatt gtcgaggtgc
     1081 tgggtgagca gggtgtttcc ggcgtgcggg tgcgcaatgt gaaaaccggt gcggtgagcg
     1141 atgtggaatg ctcgggcctg tttcccttta tcggcgtggc gccgaatacg gggtttctgc
     1201 cacctgcctt gctgaccaac accgggtatg tggagacggc gcaaaattac cgctccgccg
     1261 agccgcgtat tttcgcggca ggggcggtgc gcaaggaata tggcgggaat attctccagg
     1321 ccatggcgga aggcgtgggg gccgcggaag cggcgctgcg ccagttgcaa cagatttcgt
     1381 gacggagttg aagatggctg aaaatctcta cgaagttgtg tggccctgcg gcgagcggcg
     1441 gcagaaaatc cagcctctgg cgaaacggct ggacacgctg aatggcaaga aagtggccca
     1501 gctctgggat tatctcttca tgggcgacga ggtgttcgcc acgctggaag acgagctgcg
     1561 caagcaatat ccgcaggtgg aattcgtcag ctggcgcgag ttcggcaaca cccatacggt
     1621 gaatgagcgc gaattgctcg cgtccctgcc gcaacgtttc aaagatttgg gagtcgacgc
     1681 cgccatctcg gcgatggcct gttgaggctc ttgtacgccc gccgtgctgc gggccagtga
     1741 agcttgtgaa aaagccggtt ttccgacctc ttctctaacc tgcgagggtt tcttgggaca
     1801 agccgccgcg acatccgtcg ggctcggcat gccgaacctg cctgtggcaa tgataccggg
     1861 ccatcccggt gtacagagcc cagaggagtt gcgcgccaat gtcgtcgcgg tgacggcgtg
     1921 gcaggtgatg gagaatctgc tcaaccagcc tgacgtgcag gagatggaag acgatccggg
     1981 ctcgcgtgat atcgtattcc gcg
//
LOCUS       DASQCV010000617         2862 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_464633, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000617 DASQCV010000000
VERSION     DASQCV010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2862
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_464633"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..131)
                     /locus_tag="VEQ16_09510"
     CDS             complement(<1..131)
                     /locus_tag="VEQ16_09510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016737833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S ferredoxin"
                     /protein_id="HYP64114.1"
                     /translation="MPKMIFVERDGARREVEAPLGLSVLEVAHKHGVDIEGACEGSLA
                     "
     gene            complement(165..1262)
                     /locus_tag="VEQ16_09515"
     CDS             complement(165..1262)
                     /locus_tag="VEQ16_09515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HYP64115.1"
                     /translation="MTRLYLDANATEPLRPAARDAALAAMETLGNPSSIHGAGRAARH
                     ILETARESVARFCAARPADVIFCAGATEANALAAYALGKGRPVLAGATEHDSIRAAAP
                     QATILPVRPDGTLDVEILDEALTRQPGALVCLMAANNETGILHDIESAAKICARHGAL
                     LHVDAVQSIGRGNRDWLGLGAASFSLSGHKFGGPMGAGALIIREGIEVEALIKGGGQE
                     QGRRGGTPPLPAIAGLAAALTEPYDAASISVYRDEIEKFCVNLGAVVPGRTVLRLPNT
                     TSLILPGVRAETQLIALDMAGIAVSAGSACSSGKLAASHVLTAMGYGEQAGQAIRVSL
                     PWNVPDDAVQKFADAYAAMVKRSLRAPAHSA"
     gene            complement(1259..1918)
                     /gene="cysE"
                     /locus_tag="VEQ16_09520"
     CDS             complement(1259..1918)
                     /gene="cysE"
                     /locus_tag="VEQ16_09520"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HYP64116.1"
                     /translation="MALMFLRETIQAYRQRDPAARSGLEVFLCYPGLHAVIIHKLSGF
                     LWRHGFIISGRFVSHIGRFLTGIEIHPGAKLGRRFIIDHGMGVVIGETAEIGDDVYIY
                     HQVTLGGTSSEHGKRHPTIGNNVIIGAGAKILGAIEVGDNARVGANAVVIAPVPADTT
                     VVGIPARAVERTGRQSRFDAYGTPCDPCLDPLFHELELLRGELTELQSRVSRRQRDSA
                     V"
     gene            2137..2802
                     /locus_tag="VEQ16_09525"
     CDS             2137..2802
                     /locus_tag="VEQ16_09525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003617827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYP64117.1"
                     /translation="MPEVMFAGPEGRLEGRYHHAKERGAPLALVLHPHPLHGGTMNNR
                     ITYAMYQVFQRLGFSVMRFNFRGVGRSQSKFDGGMGEINDAAAALDWMQALNPGHGGL
                     WIAGYSFGAFVGMQLLMRRPEVSGWVSVAPPAAHYDFGFLAPCPCGGLMIHGDADEMV
                     PENSVRKLVDKLNLQKGVAIDYRVFEGADHVFANHAERVSEAVEGYVTQQLARKQMAL
                     AAD"
BASE COUNT          563 a          882 c          884 g          533 t
ORIGIN      
        1 gcgagcgagc cttcgcacgc gccttcgatg tccacgccgt gcttatgcgc cacctccagc
       61 acggagaggc cgagcggggc ttctacctcg cgccgggcgc catcgcgttc gacaaaaatc
      121 attttcggca tcagttcaaa atcctgcaga gtttgcgggg ctcgttaagc cgaatgggcc
      181 ggcgcccgca agctccgttt taccatggca gcataggcat cggcgaattt ctgtaccgca
      241 tcatccggca cattccaggg gagcgaaacg cggatggcct ggccggcctg ttcgccatag
      301 cccatggcgg tgaggacatg actggcggcg agtttgccgg aggagcaggc cgaaccagcg
      361 gacacggcga tgccggccat atccagcgcg atgagctggg tttcggcccg cacaccgggc
      421 aggatgaggc tggtggtatt gggcaggcgc agcaccgtgc ggccggggac gactgcacca
      481 agatttacac aaaatttttc aatttcatcg cgatagaccg aaattgacgc tgcgtcgtac
      541 ggctccgtga gtgccgctgc cagcccagcg atggcgggca gtggcggcgt gccgccgcgc
      601 ctgccctgtt cctgcccgcc gcctttgatc aaagcttcaa cttcaatacc ttcgcggatg
      661 atgagcgctc ctgcccccat cggtccgcca aatttatggc cagagaggga aaaacttgcc
      721 gcgcccaatc cgagccagtc tcgattgccg cggccgatgg attgcaccgc gtcgacatgc
      781 agcagcgcac cgtgccgtgc acagattttt gccgcagatt caatgtcatg tagaataccg
      841 gtctcgttat tggcagccat caggcagacc agcgcgccgg gctggcgggt cagcgcttca
      901 tccaaaatct caacatccag cgtgccatcc ggacgcaccg gcagaatggt tgcctggggt
      961 gcggcggcgc gaatggaatc gtgttctgtg gctccagcga gaacggggcg tcctttgccc
     1021 agcgcatacg ccgccagcgc atttgcctcg gtggcaccgg cgcaaaaaat cacgtcagcc
     1081 gggcgggcgg cgcaaaaacg ggcgacgctc tcgcgggcgg tttccaatat atggcgggca
     1141 gcacggccgg cgccgtggat cgaggaagga ttgcccagcg tctccatcgc cgccagcgcc
     1201 gcgtcccgcg ccgccgggcg caaaggctcg gtggcgttgg cgtcgagata gagcctagtc
     1261 acacggcgga atcccgctgc cgccgcgaaa cgcgtgactg caattcggtt agctcgccgc
     1321 gcagcagctc cagttcatgg aaaagcgggt cgaggcaggg atcgcagggc gtgccatagg
     1381 cgtcgaaccg ggactggcgc ccggtccgct ccacggcccg ggctggtatg ccgaccacgg
     1441 tggtatccgc cggcaccggg gcaatcacca cggcattggc gccgacacgg gcattatccc
     1501 ccacctcgat ggcacccaga attttcgcgc cggcgccgat aatgacatta ttgccgatgg
     1561 tgggatggcg cttgccatgc tcgctgctcg tgccgccgag agtcacctga tggtagatat
     1621 agacatcatc gcctatctcc gccgtctcac cgatgaccac gcccatgcca tggtcgatga
     1681 tgaagcgccg gccgagtttc gcgccggggt gaatttctat accggtgaga aaacgcccga
     1741 tatgcgagac gaaccggccc gatatgatga agccatgacg ccaaagaaaa cctgagagct
     1801 tgtggatgat gaccgcatgc aaccccggat agcacagaaa cacctccaac cctgaacgcg
     1861 ccgcagggtc gcgttgccgg taggcctgaa tcgtctctcg taaaaacatg agggccatgc
     1921 gaatttccgt ggatatacag cccgaaagcg cgctatatta gcggacctaa ggggaaaccc
     1981 tgtgttaaac tattcgtaat gtgggacata gatttgaaat aaccttagtt atccggaccg
     2041 cacaggtcaa ctttcggatg agcaaggcgg gaatgctgcc gccccccgct cttgtgtggc
     2101 gaaatcctac gagacgtatg aaagacgagt aacagaatgc ctgaagtgat gtttgccggc
     2161 cccgagggcc gcctggaggg acgataccac cacgccaagg aacgcggtgc ccccctcgcc
     2221 ctggttctgc accctcatcc gctgcatggc ggcaccatga ataaccgcat cacctatgcc
     2281 atgtatcagg tcttccagcg acttggcttt tcggtcatgc gtttcaattt ccgcggcgtg
     2341 ggccgcagcc agagcaagtt cgatggcggc atgggcgaga tcaacgatgc cgctgcggcg
     2401 ctcgattgga tgcaggcgct gaacccgggc catggcggcc tgtggatcgc cggctattcc
     2461 ttcggcgcct ttgtcggcat gcagctgctc atgcgccgcc cggaagtctc cggctgggtc
     2521 tccgtggctc cgccagccgc gcattatgat ttcggcttcc tcgccccctg cccttgcggc
     2581 ggcctgatga tccatggcga tgccgatgag atggtgccgg aaaattccgt gcgtaagctg
     2641 gtcgataagc taaacctgca gaagggtgtg gccatcgatt accgcgtgtt cgagggcgcg
     2701 gaccatgttt ttgccaacca tgcggagcgc gtatcggaag ccgtggaagg ctatgtgacg
     2761 cagcagctgg cgcgcaagca gatggcgctg gccgcagact aaaagttgct cccaagacca
     2821 actgcaacgg cgccctcgcg gcgccgtttt tttatgcgcc tg
//
LOCUS       DASQCV010000618         5315 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_630084, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000618 DASQCV010000000
VERSION     DASQCV010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5315
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_630084"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1122
                     /locus_tag="VEQ16_09530"
     CDS             <1..1122
                     /locus_tag="VEQ16_09530"
                     /inference="COORDINATES: protein motif:HMM:NF044972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HYP64118.1"
                     /translation="GVQNAFFVLLRAVVVVMLTIIVGRFAWAGSYNLLDRLFADPAKS
                     RFPTLLTRARHYSPAIGFLLRAVIVITALVFILQGWGLDAMFWLHHNPVSQALIRAFS
                     SVLITALVAFSLWEIYNYALHARVEKLSGTGRRRQATRLRTLAPILRAGVGTFIFAVA
                     FVVCLSDIGVNTTGLLAVSSIAGIAVGFGSQRLVQDVITGMFLLLEDAVQVGDSVTLG
                     GISGTVERLSVRTIRLRGSDGSINIIPFSSVTIVTNATRDFSNAELSITVSYSADIDR
                     VCAVLSDIGKTMRTEAAWGAMMRDDLQIFGLDKFGDQGIVISAQIRTGPGQNFAVRRE
                     FYRRVQQRFKAEGIVIPLGQQRVFKLEMAQPPPQETKES"
     gene            1122..2237
                     /locus_tag="VEQ16_09535"
     CDS             1122..2237
                     /locus_tag="VEQ16_09535"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP64119.1"
                     /translation="MQAPLLRMRLIFAMAGVGISVWALTVPFTKIRFGVDDGTLGLML
                     LAGGLGGVLVMPLAGMLIARIGSRATLATAGLGVALLMPVLAVAPSALAFTALLFVYG
                     ALFGVLDIAMNAQGAVVEARSGLLQMSGFHGFYSVGTLGVALVIVLLLRLHLPYPLCS
                     VLAALTMLVMLVSARGLIGRAGDAPPSDRHFAWPNRHAVTLGMCCFACFMTEGVATDW
                     STIYLRFDRGMPIDAAPLGYAAFAVFMTLSRFLGDGVASWLGKPAIMRAGCVLAVLGF
                     GLAIFLRNGWVDVLGFGLVGLGIANIAPLVFSAAARVPGMAASHSAPAIMALGYAGFL
                     IGPVLIGGVANHFGLGFALGVDAALVGATGFAARAVA"
     gene            complement(2268..2969)
                     /locus_tag="VEQ16_09540"
     CDS             complement(2268..2969)
                     /locus_tag="VEQ16_09540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008491986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYP64120.1"
                     /translation="MRLLRSTFFNIIMFGSGAVLSIWCALVARFLPDGIVRAARLWGR
                     ICLWALRACCGIALEVEGRENLPEGGAIIAAQHQSALDILIWLSVVQHPVFVFKKELK
                     RIPVFGGLMEPAGMISVDRGGGSTALREMVAGAITAAKAGHQVIIFPEGTRVAYGTRG
                     RIKNGIIALAHHSRMPVLPAATNSGLRWGRKAYGKHPGPVHVTINPPMPAGLTHEEIV
                     QWLERVYYGDQAAAA"
     gene            complement(3156..3782)
                     /locus_tag="VEQ16_09545"
     CDS             complement(3156..3782)
                     /locus_tag="VEQ16_09545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008491987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HYP64121.1"
                     /translation="MPRRRRRRGFSPLRLLTRIVFWIGGLWLAGFALFLIFVFTSAPP
                     NPLPSADGIVALTGGDDRVSEALALLADRQAPRLLISGAGRGTYLGDFTKDNAPAATQ
                     YALDITIGHMADSTHGNAVETASWVAAHHMRSLIIVTADYHMPRALQEMHQALPDVAL
                     IPYPVRPPAMHKILSLPTLRMLAGEYSKYLAVRAGLGWLAGAVRQSVP"
     gene            complement(3782..4666)
                     /locus_tag="VEQ16_09550"
     CDS             complement(3782..4666)
                     /locus_tag="VEQ16_09550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HYP64122.1"
                     /translation="MAKRDDLGLREALADRLLPMLVAAMSFLAALGLAGTLASASLAA
                     SWQNQASGTLTIQVPQPNDPDISGKSTRLAVVQAALGSTPGVTNPQVMSEADENALLT
                     PWLGENATQLGLQMPAVISASWAGPGAPDALSGALNKIAPGTLVDAGAIWAARVAALT
                     GSLQTCAAAVLVIVALVAAAVVAVAARAGLAQRRDTIAIVHGLGALDGDIADRFASRA
                     TLLVVMGAIIGTIAALPVLAWLSALAAPFAGPNGNNALFSLPLPLWLSLPILPLGAAG
                     IGWVTAQITVRRWLRGLP"
     gene            complement(4659..5309)
                     /locus_tag="VEQ16_09555"
     CDS             complement(4659..5309)
                     /locus_tag="VEQ16_09555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008491989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP64123.1"
                     /translation="MKYRNRPGTPGRDVLRGISFEIPDGGFRWLTGPSGAGKTSLLKL
                     IYLAEHPARGLIDILGTRAANISRREAALLRRRIGVVYQDFRLLPQLSAYDNVALPMR
                     LAHRGEAQIAADVTEILRWVGLEDKLHARPDELSGGAQQRIAIARAVVARPKLLVADE
                     PTGNLDDEQAQRLMLLITALNRLGTTVIVATHNMALVERYPAPKLRIEAGKMVQHG"
BASE COUNT          813 a         1767 c         1780 g          955 t
ORIGIN      
        1 ggggtgcaga atgccttttt cgtgctgctg cgcgccgtcg tggtggttat gctcaccatc
       61 attgtcgggc gctttgcctg ggccggcagc tacaacctgc tcgaccggct cttcgccgac
      121 cccgccaaat cccgcttccc cacactgctt acccgcgccc gccattacag cccggcgata
      181 ggcttcctgc tccgcgccgt catcgtcatc accgccctgg tcttcatcct ccagggctgg
      241 gggctggatg cgatgttctg gctgcaccac aacccggtga gccaggcgct gatcagggcc
      301 ttctcgtccg tgctgatcac cgccctcgtc gcgttcagcc tgtgggagat ctataattac
      361 gcgctgcatg cgcgcgtcga gaagctgagc gggaccgggc gcaggcgtca ggcgacccgc
      421 ttacgcacgc tggcgcccat cctgcgcgcg ggcgtcggca ccttcatctt cgccgtggcc
      481 ttcgtggtct gcctgtcgga tatcggcgtc aacacgaccg gcctgctcgc ggtctcctcc
      541 atcgccggta tcgcggtcgg ctttggcagc cagaggctgg tccaggacgt cattaccggc
      601 atgttcctgt tgctggagga cgccgtccag gttggtgact ccgttacgct cggcggcatc
      661 tccggcacgg tcgagcgtct gtccgtccgc accatccgtt tgcgcggctc ggacggctcg
      721 atcaacatca tccccttttc ctcggtcacc atcgtcacca acgccacgcg cgatttcagt
      781 aatgcggagc tttccatcac ggtgagctat agcgcggaca tagaccgtgt ttgcgccgtg
      841 ctctccgata tcggcaagac catgcgcacc gaggcggcct ggggcgcgat gatgcgcgac
      901 gacctgcaga ttttcgggct cgacaagttc ggcgaccagg gcattgtcat ctccgcccag
      961 attcgcaccg ggcccggcca gaactttgcg gtgcggcggg aattttaccg ccgcgtgcag
     1021 cagcgtttca aggcggaggg catcgtcatc ccgctcggcc agcagcgggt cttcaaactg
     1081 gaaatggccc agccgccccc ccaggagacg aaagagagct gatgcaagcg cccctgctgc
     1141 ggatgcggct gatcttcgcc atggcggggg tcggaatttc cgtctgggcc ctcaccgtgc
     1201 ccttcaccaa aatccgcttt ggcgtcgacg acggcacact cgggctcatg ctgctggccg
     1261 gcgggttggg cggggtgctg gtgatgccgc tggccggaat gctcatcgcg cgcatcggta
     1321 gccgtgccac gctggccacg gccgggctcg gcgtggcact gctgatgccg gtgctggctg
     1381 tcgccccctc ggccttggcg ttcacggcgc tgctgttcgt ctatggtgct ttgttcggcg
     1441 tgctggatat cgccatgaac gcgcaggggg cggtggtgga ggcgcggtcc gggctgctgc
     1501 aaatgtcggg cttccatggc ttctacagcg tcggcacgct tggcgtggcg ctcgtcattg
     1561 ttttgctcct gcggctccat ttgccctacc cgctctgctc cgtcctggcg gcgctgacga
     1621 tgctggtgat gctggtctcc gcgcgcggcc ttatcggccg cgcgggcgac gcgccgcctt
     1681 cagaccggca tttcgcctgg cccaaccgcc acgccgtcac gcttggcatg tgctgcttcg
     1741 cctgcttcat gaccgaaggc gtggcgacgg actggagcac catctatctg cgcttcgacc
     1801 ggggcatgcc gatcgatgcc gcgccgctgg gctatgcggc ctttgccgtg ttcatgacct
     1861 tgtcgcgttt tctcggcgac ggggtggcct cctggctggg caagccggcc atcatgcggg
     1921 cgggctgcgt cctggcggtg ctcggcttcg gcctggcgat tttcttgcgc aatggctggg
     1981 tggatgttct cggcttcgga ctggtcgggc tcggcatcgc caatatcgca ccgctggtgt
     2041 tttccgccgc ggcgcgtgtg cccggcatgg cggcgagcca ttcggcgccg gccatcatgg
     2101 cgctgggcta tgcggggttt ctcatcgggc cggtgctgat cggcggggtg gccaaccatt
     2161 ttggcctggg tttcgcgctc ggagtggatg cggcgctggt gggggcgacg gggtttgcgg
     2221 cgcgggccgt ggcttgagct tcacctcaac ctaaaccatc cgtcccctca agcggccgcg
     2281 gcctgatccc cgtaataaac ccgctccagc cactgcacga tctcctcgtg cgtcagccct
     2341 gccggcattg gcgggttgat ggtgacatgc accggccctg gatgcttgcc ataggctttt
     2401 cgtccccagc gcaggccgga attggtggcc gcgggcagca ccggcatgcg tgaatgatgc
     2461 gccagggcga tgatgccgtt cttgatcctg ccgcgcgtgc cataggctac gcgcgtgccc
     2521 tcggggaaga tgatgacctg atgcccggcc ttggccgcgg tgatggcgcc ggccaccatc
     2581 tcgcgcagcg ccgtgctgcc gccgccgcgg tcgaccgaga tcatgcccgc gggctccatc
     2641 agcccgccga acacggggat gcgcttgagc tccttcttga acacgaagac cgggtgctgc
     2701 accacgctca gccagatgag aatgtccagc gccgattgat gctgggccgc gatgatggcg
     2761 ccgccctccg gcaggttttc ccgcccctcc acctccagcg cgatgccgca gcaggcgcgt
     2821 aaggcccaca ggcagatgcg cccccagagc cgtgccgcgc gcacgatgcc gtcaggcaga
     2881 aagcgagcca ccagggcgca ccagatgctg agcaccgccc cgctgccgaa catgatgata
     2941 ttgaagaagg tcgaacggag cagtctcatg agaggccgtt tcataagtct actctggcgg
     3001 ccgtcaagcg gcgattttct acggttgcga gcgcgcgcca ctggttcgag tgcgcgaagc
     3061 aacagtgctc acgtactaaa gtacgttccg ctccggtgct caaaaatcac cgcttgacga
     3121 ctcaccaaag cgacttcgga aacggcctct aagactcaag gtaccgactg gcgcaccgct
     3181 ccggcaagcc atcccagccc tgcgcgtacg gcaaggtact tgctgtactc cccggccagc
     3241 atgcgcaagg tgggcaggct gagtatcttg tgcatggcgg gcgggcggac gggatagggg
     3301 atgagcgcca catccggcag ggcctggtgc atctcctgca gcgcgcgcgg catatggtag
     3361 tctgccgtca cgatgatgag cgagcgcata tggtgtgccg ccacccagct cgcggtttcc
     3421 acagcattgc catgggtgct gtccgccatg tggccgatgg tgatgtccaa tgcatattgg
     3481 gtcgcggccg gggcattgtc cttggtgaaa tcgcccagat aggtgccgcg cccggcaccg
     3541 gagatgagca gcctcggcgc ctggcggtcg gccagcaggg ccagcgcctc gctcacccgg
     3601 tcatcgccgc cggtgagcgc cacgatgccg tcggccgagg gcagcgggtt gggcggcgcg
     3661 gaggtgaaga caaagatgag gaacagggca aacccggcga gccacaggcc gccgatccag
     3721 aagacgatcc gcgtcagcag gcgcagcggg gagaaacccc tgcggcggcg gcggcgcggc
     3781 atcagggcag gccccgtagc cagcgccgca cggtaatctg cgccgtcacc cagccgatgc
     3841 cagccgcccc cagcggcaaa atgggcaggc tgagccagag cggcagcggc aggctgaaca
     3901 aagcgttatt gccattcggc ccggcgaaag gggcggccag tgccgacagc caggccagca
     3961 cgggcagcgc cgcgatggtg ccgattatgg cgcccatcac caccagcaaa gtggcgcggc
     4021 tggcgaagcg gtcggcgata tcgccatcca gcgcgcccag cccatgcacg atggcgatgg
     4081 tgtcgcgccg ctgcgcaagc ccggccctgg ccgccaccgc gaccacggcc gccgccacca
     4141 gcgcgacgat gaccagcacc gcggcggcgc aggtctgcag cgagccggtg agagccgcca
     4201 cgcgcgccgc ccagatggcg ccggcatcca ccaaagtgcc gggggcgatt ttgttcaacg
     4261 cgccgcttag cgcatccggc gcgccggggc cggcccagct cgcggaaatc accgccggca
     4321 tctgtaatcc caattgtgtc gcattctcgc cgagccaggg ggtgagcagc gcattctcat
     4381 ccgcttcgct catcacctgc gggttagtga cacccggcgt gctgcccaaa gcggcctgca
     4441 caacagcaag gcgcgtgctc ttgccggaga tgtccgggtc gttcggctgg ggcacctgga
     4501 tggttagtgt gccgctggcc tggttctgcc aggaggcggc gagagaggcg ctggccagcg
     4561 tgccggcgag gccgagggcg gcgagaaagc tcatcgccgc caccagcatg ggcagcagcc
     4621 ggtcggccag cgcctcgcgc aggccgagat cgtcccgctt agccatgctg caccatcttc
     4681 cccgcctcga tgcgcaattt tggcgcaggg taacgttcca ccagcgccat attatgtgtg
     4741 gcgacaatca ccgtggtgcc gagccggttg agcgcggtga tgagcagcat caggcgttgc
     4801 gcctgctcgt catcgagatt gccggtgggc tcgtcggcca ccagcagctt tggccgcgcc
     4861 accacggcgc gggcgatggc gatgcgctgc tgtgccccgc cggagagttc gtccgggcgc
     4921 gcatggagct tatcctcgag ccccacccag cgcaggattt cggtgacatc cgcagcgatc
     4981 tgcgcctcgc cgcgatgggc gaggcgcatc ggcagcgcta cgttatcgta ggccgagagc
     5041 tgcggcagca ggcggaaatc ctggtagacc acgccgatgc gccggcgcag gagtgctgcc
     5101 tcgcgccttg aaatattggc cgccctggtg ccgagaatat cgatcagtcc acgtgccgga
     5161 tgctcggcga gatagatgag tttcagcagg ctggtcttgc cggcgccgga gggtccggtg
     5221 agccagcgga agccgccatc ggggatttcg aagctgatgc cgcgcagcac atcacgcccc
     5281 ggcgtgccgg gacggttgcg gtatttcagc cagac
//
LOCUS       DASQCV010000619         2780 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1294129, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000619 DASQCV010000000
VERSION     DASQCV010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2780
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1294129"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..348
                     /locus_tag="VEQ16_09560"
     CDS             <1..348
                     /locus_tag="VEQ16_09560"
                     /inference="COORDINATES: protein motif:HMM:NF021438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HYP64124.1"
                     /translation="EWLRQPLDSAGKPKTDIHNPDASLRPRLLCGLTILGNFTPDGDG
                     GWKGGWIYDPASGNTYKSIMHVAADGRLHVRGYIGIPMLGRSEIMTRPATQLPHCVVG
                     SVAAQPAAAAPAP"
     gene            complement(263..982)
                     /locus_tag="VEQ16_09565"
     CDS             complement(263..982)
                     /locus_tag="VEQ16_09565"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HYP64125.1"
                     /translation="MMVPIDQTNHFFEELSPQLQLAFDDISYEYHAAAGEVLLRTGCK
                     CAQLYQLRAGKVEYRVADGRGGETVAATLGKGDWIGLPETFSNMPSAADVIAITPAEL
                     RVIPQHSFEVLLDHHPVLARRLLQLFSVSLSAVYYQARDRNALPLKERLLRTLYMLSF
                     SHGKTLRQQQGILIEMPQEELSHRLAAARQTLNRQLKALEREGLIRVNYGSITVLGLQ
                     RLAERQLSQPRNVATAWLDVS"
     gene            1497..>2780
                     /locus_tag="VEQ16_09570"
     CDS             1497..>2780
                     /locus_tag="VEQ16_09570"
                     /inference="COORDINATES: protein motif:HMM:NF013044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HYP64126.1"
                     /translation="MTMMSQVKDAQGSGIPFPITDPERIPTQRYYDEAFYKLENERLW
                     PRVWQMAARLEQIPNVGDWIEYKNLGKSVIIMRAADGIKAYHNACRHRGVPITEGKPH
                     GNCEHEGFTCPFHGWRWNIEGENTFVYGKQKFSEHQLEKADLALKQCRVDIWGGCVFI
                     NFDDNAPSLRETLGPVADRLEAHGLSNLRAEWWFATELPANWKIAMEAFMEGYHVMKT
                     HPQLQRTLPSLYNSMYAYNMTDTGGVGLPTNPYLSGRENVKAQVKHLELLSEGMAGMV
                     HAKEIEIAKELLEVELPEDPMLAVQTWYGIFQDQITKRLRAKGEPVPDLNAVAVSDPV
                     HAVEFIFPHYFLLPFFSSMSAYRIRPLGPESCLFEIWSLTLFPEGEEPPPVMDPIVLP
                     HDSQEFPPIPRQDYSNIPAQQIGLHAEGFEFMRLAK"
BASE COUNT          543 a          827 c          896 g          514 t
ORIGIN      
        1 gaatggctgc gccagccgct cgatagcgcc ggcaagccca agaccgatat ccataatccg
       61 gacgcatcgc tccgcccccg cctgctctgc gggctgacca ttctgggcaa tttcacgccg
      121 gatggggatg gcggctggaa gggcggctgg atttacgatc ctgccagcgg caatacctat
      181 aaatccatta tgcatgtggc ggccgacggc aggctgcacg tgcgcggcta tatcggtatc
      241 ccgatgctcg gccggtcgga aattatgaca cgtccagcca cgcagttgcc acattgcgtg
      301 gttggctcag ttgccgctca gccagccgct gcagccccag caccgtgatc gagccgtaat
      361 tcacccggat cagcccttcg cgctccagcg ctttcagctg ccggttgagc gtctggcggg
      421 ctgccgcaag gcggtggctc agttcttctt gcggcatctc gatgagaatc ccctgctgct
      481 ggcgcagggt tttgccgtgg ctgaaggaga gcatatagag cgtgcgcagc agccgctcct
      541 ttagcggcaa ggcgttgcgg tcgcgcgcct ggtaatagac ggcggagagg ctgacgctga
      601 aaagctgcag cagccgccgc gccaaaacag gatgatggtc gagcagcacc tcgaatgaat
      661 gctgcgggat gacgcgcagc tcggccggcg tgatggcgat gacatcggcg gccgagggca
      721 tgttgctgaa agtctccggc aggccgatcc agtccccctt accgagggtg gcggcgacag
      781 tctccccgcc ccgcccgtcc gcgacccggt attccacctt gcccgcgcgc agctgataga
      841 gttgggcgca tttgcagccg gtgcgcagca gcacctcgcc ggcggcggca tgatattcat
      901 aactgatgtc gtcgaacgcc aattgcagct gaggcgacaa ttcttcgaaa aagtgattcg
      961 tttggtcgat gggcaccatc atggtttctc ccgacagtca tttttggtct tgttatgata
     1021 cagcctatgc caaaacttgg gtgctctgca acaatcgtgc gcgtaggcgg ggcaggcggg
     1081 acggaacggg gcggctcaga ttgcagggct ggagatatat gattgaattt ccaggcaagg
     1141 cgccggcggc ggttggggca gcttcgctgt tccaattgag gacagggggg cgccggcacg
     1201 gtatcgcccc cgcgttgccg ggggaatttt cgagcccggt gaagcacttc gcgcgcaggc
     1261 tgcctccatt tgcggcgcgc ggcggcaagg ggcgcgagat gggcggtgca gcttggttct
     1321 gttccgttga cataggcatg aggttggcgt tacccgaagc gtgacagata agctaagagg
     1381 gcgttcaggc ttcgcggcca ggaggaaacc gccacaatac caggcccgcc atgggcagcg
     1441 ccacgataac gaacaaactt taatcagaca gaatttagcg gcgagaggga cggagcatga
     1501 cgatgatgag ccaggtgaaa gacgcgcagg gaagcggcat tccgttcccc atcaccgacc
     1561 ccgagcgcat cccgacgcag cgttattatg acgaggcatt ctacaagctg gaaaatgagc
     1621 gcttgtggcc gcgggtgtgg cagatggcag cccggcttga gcagattccc aatgttggcg
     1681 actggatcga gtacaagaat ctcggcaaat ccgtcatcat catgcgcgcg gcggatggca
     1741 tcaaggccta tcacaatgcc tgccgccatc gcggcgtccc catcaccgaa ggcaagccgc
     1801 acggcaattg cgagcatgag ggcttcacct gcccgttcca tggctggcgc tggaatatcg
     1861 aaggcgagaa taccttcgtc tatggcaagc agaaattcag cgagcaccag ctggagaagg
     1921 cggatctcgc gctgaagcag tgccgtgtcg atatctgggg cggctgcgtc ttcatcaatt
     1981 tcgacgataa cgccccctcg ctgcgcgaga cgctcggccc ggtcgccgat cggctggagg
     2041 cgcatgggct cagcaatctg cgcgccgaat ggtggttcgc gacggagctg ccggcgaact
     2101 ggaagatcgc tatggaagcc ttcatggaag gctaccatgt gatgaagacc catccgcagc
     2161 tgcagcgcac tttgcccagc ctgtacaact ccatgtacgc ctacaacatg accgatacgg
     2221 gcggcgtcgg cttgccgacc aatccgtatc tgtcgggccg tgagaatgtg aaggcgcagg
     2281 tcaagcatct cgaactgctg agcgagggca tggcgggcat ggtgcatgcc aaggagatcg
     2341 agatcgccaa ggagctgctc gaggtcgagt tgccggaaga cccgatgctg gcggtgcaga
     2401 cctggtacgg catcttccag gaccagatca ccaagcgcct gcgcgccaag ggcgagccgg
     2461 tgccggatct gaacgcggtc gccgtgtccg accccgtgca tgcggtcgaa ttcatcttcc
     2521 cgcactactt cctgctgccg ttcttctcca gcatgtcggc ctaccggatc cgcccgctgg
     2581 ggccggaaag ctgcctgttc gagatctggt cgctgacgct gtttccggag ggcgaggagc
     2641 cgccgccggt catggatccg atcgtgctgc cgcacgacag ccaggaattc ccgccgatcc
     2701 cgcggcagga ctattccaac atcccggcgc agcagatcgg cctgcacgcc gagggcttcg
     2761 agttcatgcg cctggcgaag
//
LOCUS       DASQCV010000620         4544 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2950883, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000620 DASQCV010000000
VERSION     DASQCV010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4544
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2950883"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            170..853
                     /locus_tag="VEQ16_09575"
     CDS             170..853
                     /locus_tag="VEQ16_09575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64127.1"
                     /translation="MTPPVTCLHYPAPAGGAQTLLIMLPGAGSNAQDFAANAMIAAAH
                     EAAPDIDIIVAAPDIALYLEDGVTEILHRIVVEPALARGITRIWLLGISLGGMGALLY
                     ARAYQQHIEGLFLLAPFLGTKGTVAELTRAGGLLRWSPAGSKATIPEQNLLTWLQSRL
                     TADETAPALYLGYAAQDRFSPAHKMLAACLPPQRVAHIEGDHDWPSWRALWRQLLAFS
                     SFPGRAKAQ"
     gene            891..2051
                     /locus_tag="VEQ16_09580"
     CDS             891..2051
                     /locus_tag="VEQ16_09580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64128.1"
                     /translation="MGNDHAGGAAYEDLYPYYAELCALSELRKKPGCGVSLQSGRGGH
                     ALLYLNGVQRDGDARRLRLVTQNPAAHGAGISVNSHYSNANWIAIEGRDFLWRGALAA
                     DEPVTPETYARTQAAAKAQGVLDGIIFHKSFFAAKPAAMSDEDYMYEISTATDYALQF
                     GRDSFCARIPLDRPRMEALITYLNAINEPYRRGKAYHWNLFNDNCVHVARNALAAAGV
                     WKPWPTGQFFALAAFHFPVPKNAIVDLWRRGNDLPLDDAQALYEDEAARDALLNHGAL
                     PTAPGALARRVPAIAANEIYDVSKLKLIFYDNPVWSPYRPHLRRMFTAPYSTDLHANL
                     VHFAARYEQARHRPRPRRMTGARESFQFHYEAHLARAAASTSALLARLEHAA"
     gene            2048..3238
                     /locus_tag="VEQ16_09585"
     CDS             2048..3238
                     /locus_tag="VEQ16_09585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011630739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-[acyl-carrier-protein] synthase
                     family protein"
                     /protein_id="HYP64129.1"
                     /translation="MKPLALSPFALVTSLGAGEEATLAALRAGRSGLAPCQFDTLPLA
                     AWTGEAQGCDDAPLTGAWASFDCRNNRLAALALAQDGFLNIVEDAKTRYGAARIGLFL
                     GTSTSGILQTETAYRQRNLDGALPPGLDYGRTHNTYALGQFVRAYLGLHGPAFVISTA
                     CAATSKVFASATRMIEAGLCDAAIVGGADTLCATTLFGFHALGVMAEGPCRPFDAARS
                     GISIGEAAGFTLLERPGQRHDDETIMLLGTGESADAYHMSSPHPDGAGACRAMELALK
                     DAGLRSKNIGYINLHGTATLAGDAAEDRAISTLFGNEVPCNSSKGFTGHTLGASGVVG
                     AAICSLAIRNKFLPGSPHTTRPDPTFTSNYLTTGRAAQLSIAMSNAFGFGGVNCSLIL
                     GRPS"
     gene            3235..4026
                     /locus_tag="VEQ16_09590"
     CDS             3235..4026
                     /locus_tag="VEQ16_09590"
                     /inference="COORDINATES: protein motif:HMM:NF025100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl synthase chain length factor"
                     /protein_id="HYP64130.1"
                     /translation="MIDLFIEGIGLHGPGLESWEASAPVLRGEAPYQDAPPSLPASPL
                     LPAAERRRAPKIVRLALAAGTEAFCISGRSPAETATIFTSSGGDGETIHDILSTLATP
                     PRELSPTRFHNSVHNAAAGYWSIATGATAPSTSLCAHDDSFAAGLLEAAAQATATGQP
                     VALIAYDVPYPVPLARVRPIGAVFGVAFVLSPIEGPASIARLSLALQPYAAPSQAPAL
                     LEPLRRATPAARSLPLLAALAHGVERSVTLGYLDDMSLLLHLSPP"
     gene            4035..4463
                     /locus_tag="VEQ16_09595"
     CDS             4035..4463
                     /locus_tag="VEQ16_09595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64131.1"
                     /translation="MNRDAILTMIPHAGEMCLLDELLDWDGQSVRCLSHRFAAAGNPL
                     RRPDGTLGTAAIIEIAAQAMALHGRLTAPQDAPPRPGMLAALRDVQLAAPLLAATAPL
                     IITARRLLGDGTGASYQFAVTSDDANLLSGRATVLFGAAS"
BASE COUNT          737 a         1740 c         1301 g          766 t
ORIGIN      
        1 cgccgcgcgc cgccgccgcc atcgtgctgg ccaatctctg caccgtggcg gcttacgggt
       61 tgctctccct ctcacgcatc cccgtgctgc acgatatcgg cctcaccgtc gccaccggca
      121 catttctggt cctgctctgc agcgccgtgc tcagcacgcc ggagggcgca tgaccccgcc
      181 cgtcacctgc ctgcactacc ccgccccggc gggcggcgcg caaacattgc tcatcatgct
      241 cccaggtgct ggcagcaacg cgcaggattt cgccgccaac gccatgatcg ccgccgcgca
      301 cgaagccgcg ccggacatcg acatcatcgt cgccgcgccg gacatagcgc tctatctcga
      361 agacggcgtc accgaaatat tgcaccgcat tgtcgtggag cccgcgctcg cccgcggcat
      421 cacccgcatc tggctgctcg gcatctcgct cggtggcatg ggggctttgc tttatgccag
      481 ggcgtatcag caacatatcg aaggcctgtt cctcctcgcc cccttcctcg gcaccaaggg
      541 cacggtcgcc gagcttaccc gcgccggcgg gctgctgcgc tggtctcccg ccggcagcaa
      601 ggccacgatc ccggaacaaa accttctcac ctggctgcaa tcccgcctca ccgcagacga
      661 aaccgccccc gccctctatc tcggctatgc cgcgcaggac cgtttttccc ccgcgcacaa
      721 gatgctcgcc gcctgcctgc cgccgcaacg cgtcgcgcac atagagggcg atcacgattg
      781 gccaagctgg cgcgctttat ggcgccaatt gcttgctttt tcctctttcc ctggacgcgc
      841 aaaggcgcag tgatatagtg gctctcacga ttcacgcagg accggaaaca atgggcaatg
      901 atcacgccgg cggcgccgcc tacgaagatc tctaccctta ttacgccgaa ttatgcgcgc
      961 tgtcggaatt gcgcaagaaa ccaggctgcg gcgtgtccct gcaaagcggc aggggcggcc
     1021 atgccttgct ctatctcaac ggcgtgcagc gcgacggcga tgcacgccgc ctgcgcctgg
     1081 tcacgcagaa cccggccgcg catggcgccg gcatcagcgt caattcccat tacagcaacg
     1141 ccaactggat cgccatcgaa gggcgcgatt tcctctggcg cggcgccctg gccgcagatg
     1201 agcccgtgac gcctgaaaca tacgcgcgca cccaggcagc cgccaaagcg caaggcgtgc
     1261 tggatggcat catcttccac aaatccttct tcgccgccaa gcccgccgcc atgagcgatg
     1321 aagattatat gtacgaaatt tccaccgcca ccgattacgc cctgcaattc ggccgtgact
     1381 cattctgtgc ccgcattccc ctggaccgcc cgcgcatgga agccctcatt acctatctta
     1441 acgccatcaa cgagccttat cgccgcggca aagcctatca ctggaacctc ttcaacgata
     1501 attgcgtgca tgtcgcccgc aacgcgctgg ccgccgccgg tgtctggaaa ccctggccca
     1561 ccggccagtt tttcgcactc gccgccttcc attttcccgt gccgaaaaac gccatcgtcg
     1621 atctctggcg ccgcggcaat gaccttccgc tcgacgatgc gcaggcgctc tatgaggatg
     1681 aagccgcccg cgacgcactg ctcaaccatg gcgcgctgcc caccgccccc ggcgcgctcg
     1741 cccgccgcgt tcccgccatt gccgccaacg aaatctatga tgtcagcaag ttgaagctta
     1801 ttttctacga taatcccgtc tggagcccct accgcccgca tttacgccgc atgttcaccg
     1861 cgccgtattc caccgatctg catgcgaatc tcgtccattt tgccgcgcgc tacgagcagg
     1921 cgcggcaccg cccgcgcccc cgccgcatga ccggggcgcg ggaaagcttc cagttccatt
     1981 acgaagccca tctcgcccgc gccgccgcca gcaccagcgc gctgctggcc cggctggagc
     2041 acgccgcatg aagcccctgg cgctcagccc gttcgccctc gtcaccagcc tcggcgccgg
     2101 cgaggaagcg acgctcgccg ccttgcgcgc ggggcgcagc ggactcgccc cttgccagtt
     2161 cgatacgctg ccgctcgccg cctggaccgg cgaagcccag ggctgcgacg atgcccctct
     2221 caccggcgca tgggcctcgt tcgattgccg caataaccgc ctcgccgccc tggctctggc
     2281 acaggacgga ttcctcaata tcgtcgagga cgcgaaaaca cgttacggcg ccgcgcgcat
     2341 cgggctgttt ctcggcacca gcacctccgg catattgcag acggaaaccg cctaccgcca
     2401 gcgcaatctg gatggcgcgc tgccgcctgg gctcgattac gggcgcaccc acaacaccta
     2461 cgcgctgggg caattcgtgc gcgcctatct cggtttgcac ggcccggcct tcgtcatctc
     2521 caccgcctgc gccgccacct ccaaagtctt cgccagcgcc acgcgcatga tcgaggccgg
     2581 gctatgcgat gccgccatcg tcggcggcgc ggacacgctt tgcgccacca ccttgttcgg
     2641 cttccacgcg ctgggggtga tggccgaagg cccgtgccgc ccgttcgacg ccgcgcgcag
     2701 cggcatctcc attggcgagg ccgccggttt cacgctcctt gagcgccccg gccagcgcca
     2761 cgatgatgaa acaatcatgc tccttggcac gggcgaaagt gcggatgcct accatatgtc
     2821 ctcgccgcac ccggacgggg caggggcctg ccgcgccatg gagctggcgc tgaaagatgc
     2881 tggtttgagg agcaaaaata tcggctacat caacctgcac ggcacagcga cgctggcggg
     2941 ggacgcggcg gaggaccgcg ccatttccac cctcttcggc aacgaggtgc cctgcaattc
     3001 cagcaagggc tttaccggcc atacgctcgg cgcctcgggc gtggtgggcg cggcgatctg
     3061 ttcacttgcc atccgcaaca aatttctgcc cggcagcccg cacaccaccc ggcccgatcc
     3121 cactttcacc agcaactacc tcaccaccgg ccgcgccgcg cagctgagca tcgccatgag
     3181 caacgccttc ggcttcggcg gcgtcaattg cagcctcatt ctgggccgcc cgtcatgata
     3241 gacctcttca ttgaaggcat cggcctgcac ggccccggcc tggaaagctg ggaggctagc
     3301 gcgccagtgc tgcgcggcga ggcaccctac caggacgccc cgcccagcct gccggcgagc
     3361 ccccttctgc cggccgccga gcgccgccgc gcgcccaaaa tcgtccgcct ggcactcgcc
     3421 gccggcacag aggcattttg catctccggc cgctcgcctg ccgaaaccgc caccatcttc
     3481 acctcgtccg gcggcgacgg cgagacaatc cacgacatcc tcagcacctt ggccacgccg
     3541 ccgcgcgagc tttcgccgac gcgtttccat aattccgtgc ataacgccgc cgccggctat
     3601 tggagcatcg ccaccggcgc caccgcgcct tccaccagcc tatgcgcgca tgatgacagt
     3661 ttcgcagccg gactgctgga ggccgccgcg caggccacgg ccacggggca gcccgtggcg
     3721 ctcatcgcct atgacgtgcc ctatcccgtg ccgctcgcca gggtacggcc catcggcgcg
     3781 gtcttcggcg tggccttcgt gctgtcgccc atcgagggcc cggccagcat cgcgcggctc
     3841 agcctcgctt tgcagcccta cgccgcgccc agccaagccc ctgcgctgct ggaacctctg
     3901 cgccgcgcca cgcccgcggc gcgctccctg ccgctgctcg ccgccctcgc gcacggcgtg
     3961 gaacgcagcg tcacgctggg ttatctggat gatatgagcc tgcttctgca tctctccccg
     4021 ccatgaatcg cccaatgaat cgcgatgcca tcctcaccat gatcccgcat gcgggcgaga
     4081 tgtgcctgct cgacgagttg ctggactggg acgggcagtc cgtgcgctgc ctgtcgcatc
     4141 gtttcgccgc cgccggaaac ccgctgcgcc gcccggacgg cacgctcggc acggccgcga
     4201 tcatcgagat cgccgcccag gccatggccc tgcatggccg gctcacggca ccccaggacg
     4261 ccccgccccg ccctggcatg ctcgccgccc tgcgcgatgt gcaacttgcc gcaccgctgc
     4321 tcgcggctac cgcgccgctc atcatcacgg caaggcggtt gctcggcgac ggcacaggtg
     4381 ccagctatca gttcgccgtc accagcgacg atgcaaatct gctgagcggt cgcgccacag
     4441 tgttgtttgg agctgcatca tgaagcgtgc attggtgaca ggcggcagcg gcgccatcgg
     4501 caccgccatc gcccgggccc tggccaagga cgggcaccat gtct
//
LOCUS       DASQCV010000621         1645 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3282156, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000621 DASQCV010000000
VERSION     DASQCV010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3282156"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..713
                     /gene="rdgB"
                     /locus_tag="VEQ16_09600"
     CDS             141..713
                     /gene="rdgB"
                     /locus_tag="VEQ16_09600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HYP64132.1"
                     /translation="MSQVVIATRNQGKIKEFLPLLAPLGLEPVSAGELGLPEPAETAD
                     DFAGNARIKAVAAATASGLPALADDSGLSVAAMGGGPGIYSARFASGDYPAAFASIIA
                     AAQDADEWRAWFTCALCFARPDGSTATYIGEAHGRIALPQGDKGFGYDPIFVPDGYEK
                     SYAELGAEVKDKISHRARAFAQFAAARPGL"
     gene            complement(966..>1645)
                     /locus_tag="VEQ16_09605"
     CDS             complement(966..>1645)
                     /locus_tag="VEQ16_09605"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA polymerase factor sigma-32"
                     /protein_id="HYP64133.1"
                     /translation="VSELISEGNVGMMQAVKRFDPDRGFRLSTYAMWWIRAAIQEYIL
                     HSWSLVKMGTTAAQKKLFFNLRRLKGQMQAIEDGDLQPEHVERIAHLLDVPEQDVVNM
                     NRRLSSPDNSLNAPIKLDGEGEWQDWLVDESDSQETVMADREELTGRKALLATALKTL
                     TERERHIIAERRLKDNPTTLEDLSQHYNISRERVRQIEVRAFEKLQKAMKTQVAEQRQ
                     AARAQVH"
BASE COUNT          285 a          508 c          517 g          335 t
ORIGIN      
        1 gagatgaagc agaatagctg gctcaacgtg ccggcggatg aagccatcat ctacgacacc
       61 gactacagca ccaaatggca gcgcgccctg gccaagctgc atatcaaccc tgcgcagctc
      121 gccgcgggcg ctggccacgc atgagccagg tcgtcatcgc cacgcgcaat cagggcaaga
      181 tcaaggaatt tttaccgcta ctcgccccgc tggggctgga gccggtttcg gccggggagc
      241 ttggcttgcc cgagccggcc gagacggcgg atgatttcgc aggcaatgcg cgcatcaagg
      301 cggtggcggc cgccaccgcc tccggcctcc cggcgctggc ggatgattca ggcctctccg
      361 tggccgcaat gggcggcggg cctggtatat attcggcccg gttcgcctcc ggcgattatc
      421 ccgccgcctt tgccagcatc atcgccgccg cccaggacgc agatgaatgg cgcgcttggt
      481 tcacctgcgc tctctgcttt gcccgacccg atggcagtac cgccacctat atcggcgagg
      541 cgcatgggcg catcgccctg ccgcaagggg acaaggggtt tggctatgac ccgatcttcg
      601 tgccggacgg gtatgagaag agctatgccg agctcggggc cgaggtgaag gataagatca
      661 gccatagggc gcgggcgttt gcgcagtttg ccgcggcaag gccagggctc tgacgtcgtg
      721 cgaatgcacg cggcgtgacg acccgctggg gcttgaggcc ccagaccccc ataacttgga
      781 ccagaggctg tgactccata ggaagcctcc cgctgaagtc acagcctctg gcccaagtta
      841 taaaagtttt tggtctgctc agcgcagcgc cattggttcg agcgggctga gcaggatctt
      901 gctttttgaa aaagctgcat tcttgcaaca aaaaaggggc actcctggga gtgccccttt
      961 ttcgtttagt gcacctgcgc tcgggcggcc tgccgctgct cagccacttg tgtcttcatc
     1021 gccttctgca gtttctcaaa tgcccgtacc tcgatctggc gcacgcgttc gcgcgagatg
     1081 ttgtagtgct gcgagaggtc ttccagcgtt gtcgggttat ccttcaagcg ccgttcggcg
     1141 atgatgtggc gttcgcgctc ggtcagcgtc ttcagcgcgg tggcgagcag ggccttgcgg
     1201 ccggtcagct cctcgcggtc cgccatcacg gtttcctggc tgtcggactc atccaccagc
     1261 cagtcctgcc attcaccttc gccatccagc ttgatggggg cgttgagcga attgtccggc
     1321 gaggagaggc ggcgattcat gttcaccacg tcctgttccg gcacgtcgag cagatgcgcg
     1381 atgcgttcca catgttcggg ctgcaaatcg ccgtcctcaa tggcctgcat ctgccccttc
     1441 aggcggcgca ggttgaagaa cagcttcttc tgtgccgcgg tggtgcccat tttcacgagc
     1501 gaccagctat gcagaatata ttcttggatg gcggcgcgga tccaccacat ggcgtaagtg
     1561 gacaggcgga agccgcggtc gggatcgaag cgtttgaccg cctgcatcat gccgacattg
     1621 ccttcggaga tgagctcgga cacag
//
LOCUS       DASQCV010000622         2082 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3117502, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000622 DASQCV010000000
VERSION     DASQCV010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3117502"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..336
                     /locus_tag="VEQ16_09610"
     CDS             <1..336
                     /locus_tag="VEQ16_09610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019462523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYP64134.1"
                     /translation="PIGMNQGIQHPLAKCWAQLEAANLMVFKAASLFDQGKECGVEAN
                     AGKYLAAEAAFEACHTAMLTLGGMGYAQEYHVERLLREVLIPRTAPISPHMILNFLAE
                     KVLDLPKSY"
     gene            500..1924
                     /gene="cofE"
                     /locus_tag="VEQ16_09615"
     CDS             500..1924
                     /gene="cofE"
                     /locus_tag="VEQ16_09615"
                     /EC_number="6.3.2.31"
                     /inference="COORDINATES: protein motif:HMM:TIGR01916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043773 - coenzyme F420-0 gamma-glutamyl
                     ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HYP64135.1"
                     /translation="MTILAVLGGTGSLGGAMARRWAQAGHEIWIGSRDTAKAQHAAEA
                     LKEELPGINVHGAALGDAAAKAEIVVLAVPYASQVATIEAIKGRVGAKIVIDTTAPLK
                     PPKVGTVQLPAVGSAAVEVQTLLGDEAQVASAMQTISAEKLSHNEPIEADVLVAADKK
                     EVADIVISLIADLGLRGFHAGPLANSAASEALTSILIQLNRRYFSHAGIRITGDPKGG
                     EAAKKPVQIIPIAGLPLFKPGDDLAAAIATALRAQGEALHEGDVLVVAQKIISKAEGR
                     FARLADVTAPEAARKLAAESGKEPAVAALVLEESSAIMRAKPGLVIARHKSGHVAANA
                     GIDASNVGEGDGIVLLWPEDANASAASLRNALSSAYGADIAVIISDSLGRAWRMGTTG
                     TAIGSAGIAPLTDRRGETDLFGRTLQATVVARADELASAASLVIGEAAESTPAAIIRN
                     APYVRSATDGIDSILRPAEEDLFP"
BASE COUNT          381 a          721 c          651 g          329 t
ORIGIN      
        1 cccatcggca tgaaccaggg catccagcac ccacttgcca aatgctgggc gcaactggag
       61 gctgccaacc tcatggtatt caaggcggcc agcctgttcg accagggcaa ggaatgcggc
      121 gtggaggcca atgccggtaa atatctcgcc gccgaggccg ccttcgaggc ttgccacacc
      181 gccatgctca ccctcggcgg catgggctat gcgcaggaat atcatgtcga gcgtctgctg
      241 cgcgaagtgc ttatcccccg cacggcgccg atcagcccgc acatgatcct caacttcctg
      301 gccgaaaagg tgctggacct accgaaatca tactaaggca gcgttcagcc ccctccttgc
      361 ccgaggtggc atgagggtgg ataacagcaa ggcccggcag gcaagcgcct gttgggcctt
      421 gtccatctgg gcaggccctt agggggagaa ggtaaaaggc caaggccgcg caaggcctgg
      481 cgaaggcgga gggaagtgta tgacgattct agccgtgctc ggcggtacgg gttccttggg
      541 cggtgccatg gcgcggcgct gggcgcaggc gggccatgaa atctggatcg gctcgcgcga
      601 tacggccaag gcgcaacacg ccgccgaggc gctgaaagag gaactgcccg gcatcaatgt
      661 ccacggcgcc gctctgggcg atgccgcggc aaaagccgaa atcgtcgtgc ttgccgtgcc
      721 ctacgcctcg caggtcgcca ccatcgaggc gattaagggc cgtgtcggcg caaaaatcgt
      781 catcgacacc accgctcccc tgaagccgcc gaaagtcggc acggtgcaac tcccggccgt
      841 gggcagcgcc gccgtggagg tgcagaccct gctcggcgac gaggcgcagg tcgcctccgc
      901 catgcaaacc atcagcgcgg aaaaactctc gcataacgag cccatcgagg cggacgtgct
      961 ggtcgccgcc gacaagaagg aggtggcgga catcgtcatc tccctcatcg cagatctcgg
     1021 cctgcgcggc ttccatgccg ggcccttggc caattccgcc gcgtcggaag cgctcacctc
     1081 catcctcatc cagctcaacc gccgctattt cagccatgcc ggcatccgca tcacgggtga
     1141 tcccaagggc ggcgaagcgg ccaaaaagcc ggttcaaatc atccccatcg ccggcctgcc
     1201 tctgttcaag ccgggcgacg acctcgccgc cgccatcgcc accgctttgc gcgcccaagg
     1261 cgaggcgctg catgagggcg acgtgctggt cgtggcgcag aaaatcatct ccaaggccga
     1321 aggccgcttt gcgcgcctcg cggacgtgac cgcgccggag gcggcgcgga aactggcggc
     1381 ggaaagcggc aaggagccgg ccgtcgcggc gttggtcctg gaggaatcct cagccatcat
     1441 gcgggccaaa ccaggcctcg tcatcgcccg ccataaatcc ggtcatgtcg ccgccaatgc
     1501 cggcatcgat gcctcgaatg tcggggaagg ggatggcatt gtgctcctct ggcccgaaga
     1561 tgccaacgcc agcgccgcct ccctgcgcaa tgcgctcagc tcggcctatg gcgcggacat
     1621 tgccgtcatc atcagcgact ccctgggacg cgcctggcgc atgggcacca ccggcaccgc
     1681 catcggctcc gccggcatcg ccccgctcac ggaccgccgt ggcgagaccg acctgttcgg
     1741 ccgcacgctg caggcgaccg tggttgcccg cgccgatgag ctggcctccg ccgcctccct
     1801 ggtcatcggc gaggccgccg aatccacccc tgccgccatc atccgcaacg ccccctatgt
     1861 tcgcagcgcc acagacggga tagactccat cctgcgtccg gcggaagagg atctgttccc
     1921 gtgaccccgc gctgtgccgg agttttagcc tcatgacggc aaagagcttc acagacgaag
     1981 aattgctcgc cgggccgctg cccgcgctga tggcgcaggc agcgtcgctg cgtgatgcgc
     2041 attacggcaa tttttgctcc tattcgcgca aggtcttcat cc
//
LOCUS       DASQCV010000623         7309 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1956459, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000623 DASQCV010000000
VERSION     DASQCV010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 7309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7309
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1956459"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..346
                     /locus_tag="VEQ16_09620"
     CDS             <1..346
                     /locus_tag="VEQ16_09620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014199495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HYP64136.1"
                     /translation="TAITANDAPGFIVNRVLCVLLNEAIVALHEGVGTVESIDTGLKL
                     GANHPMGPLELADFVGLETLLSIMQVFHAELGDKYRPCPLLVKYVEAGWYGRKTGRGF
                     YDYSSNPPKPAR"
     gene            complement(379..741)
                     /locus_tag="VEQ16_09625"
     CDS             complement(379..741)
                     /locus_tag="VEQ16_09625"
                     /inference="COORDINATES: protein motif:HMM:NF014233.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HYP64137.1"
                     /translation="MPATEASILLQGFEVSASIGVHDFEKDGPQRILIDIELHLASAA
                     RPDNDDIGAVLNYDFLRDKTKTLLALRHYELQETLAHDIASFCLANSQVAAVTVYTRK
                     PDVYPDCQSIGYRLHVRR"
     gene            complement(728..1495)
                     /locus_tag="VEQ16_09630"
     CDS             complement(728..1495)
                     /locus_tag="VEQ16_09630"
                     /inference="COORDINATES: protein motif:HMM:NF006597.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP64138.1"
                     /translation="MPAVLVTGGAKRIGAAIAQHLGARGWHVFVHYNASRDEAEAVAA
                     AITDAGGNATAIGADLADAEAASALVPRCEAIQPLELLINNASYFAYDTAATTTEAAL
                     ELNMRVNLFAPALLSQAFHAAVTARAAKGTIINLIDNKVFGLNPDYFSYTLSKVALQG
                     MTQMHAMAFAPHIRVAGIAPGITLVSGNQTEREFQRIHNNNPLGQGCTPEQIAGAVEF
                     ILATPSYHGQTMVIDGGQVLQRRPRDVAFLDKPNAGN"
     gene            complement(1500..2273)
                     /locus_tag="VEQ16_09635"
     CDS             complement(1500..2273)
                     /locus_tag="VEQ16_09635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HYP64139.1"
                     /translation="MTEKQKPAPEKKAAKSAAEAAPAEAAKKPAKAAKAEASDAADAQ
                     KAPKPKRAESADAATPEPAPAPAPAVPPVVMHGGIPAGPMRPLAPPRAPAKAENFAAG
                     DHVVYPTHGVGKVERIAVEEIAGHTLELIHITFDENRMTLRVPTNKARTAGLRKLASK
                     KQFDDVLGVLKGRARIKRTMWSRRAQEYEAKINSGDPAAIAEVVRDLHRNAGQPDQSF
                     SERQIYESALDRLAAEYAALEQIDKPAAIEKLIAHLKSE"
     gene            complement(2379..2711)
                     /gene="fdxA"
                     /locus_tag="VEQ16_09640"
     CDS             complement(2379..2711)
                     /gene="fdxA"
                     /locus_tag="VEQ16_09640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin FdxA"
                     /protein_id="HYP64140.1"
                     /translation="MTYVVTENCIKCKYMDCVEVCPVDCFYVGENMLVIHPDECIDCG
                     VCEPECPAEAIFPDSDDRATAWAERNADLAKVWPNITRKGTPPVDADEWKDKPGKEAL
                     LSTAPGTP"
     gene            complement(2797..3066)
                     /locus_tag="VEQ16_09645"
     CDS             complement(2797..3066)
                     /locus_tag="VEQ16_09645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HYP64141.1"
                     /translation="MAEDPDVLRLDKFLVFARFCKTRSVAVALVEQGAVRINRQPTEK
                     PHAKLRPGDVLTMALPHGVKVVEILGLPERRGSAPVAQEFYREIG"
     gene            complement(3068..5617)
                     /locus_tag="VEQ16_09650"
     CDS             complement(3068..5617)
                     /locus_tag="VEQ16_09650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HYP64142.1"
                     /translation="MSGLLLQPRVKAVLGPTNTGKTHLAMERLLAHHSGIIGFPLRLL
                     ARENYDRMVTAKGIRNVALITGEEKIVPPGARWFACTVEAMPLDRPVEFLAVDEIQLC
                     ADPDRGHIFTDRLLNARGMVETMFLGADTIRPLLKRLIPYAEIETRPRLSRLTYAGPV
                     KLSRLPPRSAIVAFSAAEVYAIAEAVRRRRGGCAVVMGRLSPRTRNAQVALYQEKEVD
                     FLVATDAIGMGLNMDVNHVAFAGVQKFDGHKPRLLTAPELAQIAGRAGRGMRDGTFGT
                     TADCPPLSEELVEAIETHEFEPLEQLFWRNDALDFSSTYALRESLNAPPPRLGLIRGN
                     EAADVQTLAALAQDKDIARQASGRASVKLLWDVCQIPDFRKLATDSHVKLCGKIFSHL
                     RAAEKLPQDWVAREIEALDKMDGDIDTLMQRLTDVRVWAYITARADWMLDADAWAMRA
                     RAVEDRLSDTLHVKLMARFVDKRAAHLTRRLEETEAEELQAVVANNGTVLVEGHEVGR
                     IEGFQFHPDPSTQGIEKKILLRAARRALAQEMPRRILRAETAADEAFALTDDRQVEWE
                     GVKIARLKKTELFLKPGIEILHSEFLDGLARERLRARLAAWLATETEKRLGTLLKAME
                     NPPAPLRGIVHRLSESGGVLEPEPVAQTLREEAKKFGIDLGRFAIYLPAALKPGAARL
                     RALFWGVWHDRNPPPLPNAGLVSAPMPNNWGPDFALAMGWVQAGPIMIRLDVVERITR
                     ELHYLLRKHPILLPPNLGSRMGLKPDQLAPTLNVLGFRIIPAGELGAKFYGPPAPAIL
                     ARRKQEPQPQRAQAPAPRGARPAPAAAEPPKPVDADNPFAALAALKLAGRR"
     gene            complement(5668..6519)
                     /locus_tag="VEQ16_09655"
     CDS             complement(5668..6519)
                     /locus_tag="VEQ16_09655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64143.1"
                     /translation="MSFVGYWHHLDVGIKAALIGAASTLIAAFFGFSAVIIQIRAQGS
                     QSRRAIVDNEKRKLKAAMYEDALLVCRAMSDAAIALSTAFRIMDVQLRGVDSAIRMGA
                     KYVPPSTRWPFLAAKYEQFTDATIKVIFLIENRRIIDPRLLIFRTALSTVLHDTRGLM
                     YSDLFSHLLRALPVDGPGGCILPYAPPTLTEINTIKNLSEKLLDSLGDATAYSEDLTV
                     ELQNLLLGDLFGRRLLPRSPLDPTKKVVTLEKEAELEKWFVSSTPWGKMKTETEKEVK
                     GKNAQNG"
     gene            complement(6567..>7309)
                     /locus_tag="VEQ16_09660"
     CDS             complement(6567..>7309)
                     /locus_tag="VEQ16_09660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011390758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DeoR/GlpR family DNA-binding transcription
                     regulator"
                     /protein_id="HYP64144.1"
                     /translation="RQRQILATLDIAPSLRVAELAQQLHVSTETIRRDLDALTGAGLL
                     NRTYGGAVRALGQEPAVIERHAMFVAERRRIAAATIPLLAGAKVLILGSGSTVVHVAH
                     EVAARLRDLLVVTHSFGVASALAANPTIKILLLPGEYFATEGTTLGGHAVAFLQTLHA
                     DITVLGASGLTAEGPNDASTESAAVYAAMVTRGAQTIITADHSKFDRVFTARYAAWRQ
                     VATLVTDQAPEGGLAWGLQEDGVGVVVG"
BASE COUNT         1299 a         2241 c         2366 g         1403 t
ORIGIN      
        1 gaccgccatc accgccaatg acgcgccggg cttcatcgtc aaccgcgtgc tgtgcgtgct
       61 gctgaatgag gccatcgtcg cgctgcatga gggcgtgggc acggtggaat ccatcgatac
      121 cgggctgaag ctcggcgcca atcacccaat gggcccgctg gagctggccg atttcgtcgg
      181 gctggagacg ctgctctcca tcatgcaggt gttccatgcc gagctgggcg acaaataccg
      241 cccctgcccg ctgctggtga aatatgtcga ggccggctgg tatggccgca agactgggcg
      301 tggtttctac gattattcca gcaatccgcc gaagcccgcg cggtaaggca cagggggcag
      361 cgtccccctg cgagcagctt accgccggac gtggagccgg tagccgatgc tctggcaatc
      421 ggggtacaca tccggcttgc gcgtgtagac ggtaacagcc gcgacctgcg aattcgcgag
      481 acagaaactg gcaatgtcgt gcgccagcgt ctcctgcagc tcgtaatggc gcagcgccag
      541 cagggttttc gtcttgtcgc gcaggaaatc gtaattcagc accgcgccga tatcatcgtt
      601 gtccgggcgc gcggcgctcg ccagatgcag ctcgatatcg ataaggatgc gctgcgggcc
      661 gtccttctcg aaatcatgca cgccgatgga ggcgctcacc tcgaacccct ggagcaggat
      721 gctggcctca gttgccggca ttgggtttgt ccagaaaggc aacgtcgcgc gggcggcgct
      781 gcagcacttg gccgccatcg atgaccatgg tctggccatg ataggacggc gtggcgagga
      841 tgaactcgac cgcgccggca atctgctccg gcgtgcagcc ctggccgagc gggttgttgt
      901 tgtggatgcg ctggaattcc cgctcggtct ggttgccgct gacgagggtg atgccgggcg
      961 cgatgccggc gacgcgaata tgcggcgcga aggccatggc gtgcatctgc gtcatgccct
     1021 gcagcgcgac tttcgagagg gtgtaggaga aataatccgg gttcagcccg aagaccttgt
     1081 tgtcgatgag attgatgatt gtacccttcg cggcgcgcgc ggtgacggcg gcgtggaagg
     1141 cctgggacag caaggcgggc gcaaagagat tgacccgcat attaagctca agcgccgctt
     1201 ccgtggtggt ggctgctgtg tcgtaggcga aatatgaggc gttgttgatg agcagctcga
     1261 gcggctggat ggcctcgcag cgcggcacca gggcggacgc cgcctccgcg tcggcgaggt
     1321 cggcgccgat ggcggtggca ttgccgcccg cgtccgtgat cgcagcggca acggcctcgg
     1381 cctcgtcgcg cgacgcattg taatgcacga atacatgcca gccgcgcgcg cccagatgct
     1441 gcgcgatggc cgctcctatg cgcttggccc cgccggtaac gagaacggcc ggcacggcgc
     1501 tactcggatt tcagatgcgc gatcagcttc tcgatggcgg ctggcttgtc gatctgttcc
     1561 agtgccgcat attccgccgc caagcggtcc agggcggact cgtaaatctg acgctcggaa
     1621 aaactctggt ccggctggcc ggcattgcgg tgcaaatcgc gcaccacttc ggcgatggcc
     1681 gccgggtcgc cggaattgat cttcgcctca tattcctggg cgcggcgcga ccacatggtg
     1741 cgcttgatgc gggcgcggcc cttcagcacg ccgagcacat cgtcgaactg cttcttggag
     1801 gcgagcttgc gcaacccggc agtgcgggcc ttgttggtgg gcacgcgcaa agtcatgcgg
     1861 ttttcatcga aggtgatgtg gatgagctcc agcgtatggc ctgcgatttc ctccaccgcg
     1921 atgcgctcga ccttgccgac gccatgggtg gggtaaacca catggtcgcc cgccgcgaaa
     1981 ttctccgcct tggcgggagc gcggggcggg gccagagggc gcatcggtcc ggccggaatg
     2041 ccgccatgca tgacaacggg gggcaccgca ggggctgggg ctggagcggg ctcaggggtg
     2101 gcagcgtcgg cggattctgc gcgctttggc ttgggagcct tctgggcgtc cgcggcatcg
     2161 ctcgcctcag ccttggccgc cttggcgggc ttcttggcag cctcggccgg cgccgcctcg
     2221 gcggcggatt tcgcggcttt cttctccggc gcgggcttct gcttttcggt catcaccact
     2281 ccaataacag ccaaaaaccg ggcgcgcagg gccgcgtccg gttctaccag atttgcatag
     2341 cagatttttg cccgtccgtc acgggcggcc tggccgggtc agggcgtgcc aggggccgtg
     2401 gagagcaggg cttccttgcc gggcttgtcc ttccactcat cggcatccac cggaggggtg
     2461 cccttgcggg tgatgttggg ccaaaccttc gccagatcgg cattgcgctc ggcccaggcc
     2521 gtggcgcggt cgtcactgtc cgggaaaatg gcctcagccg ggcattccgg ctcgcacacg
     2581 ccgcaatcga tgcattcgtc cgggtggata accagcatgt tctcgccgac atagaagcag
     2641 tccaccgggc agacttccac gcagtccata tatttgcact tgatgcagtt ttcggtgacc
     2701 acgtaggtca tcagtcactc ctagaagata cgacgcgatt ttgctccccc tatgcgcgcg
     2761 ggccagggtt tatgcaaggt tgtgcggcgg ccggttttag ccgatctccc ggtaaaattc
     2821 ctgcgccact ggcgcactgc cgcgtcgttc cggcaggccg agaatctcca ccactttcac
     2881 gccgtgcggc agcgccatgg tcagcacgtc gccgggccgc agcttggcgt ggggcttttc
     2941 ggtgggctgg cggttgatgc gcacagcccc ctgctccacc agcgcaacgg cgacggagcg
     3001 ggttttgcag aaacgggcga agaccaggaa tttgtccagg cgcaggacgt ccgggtcttc
     3061 cgccatttta tcgccggcca gcgagtttca gcgccgccag ggccgcgaag gggttgtcgg
     3121 catccactgg cttgggcggt tccgcggcgg ccggggcagg cctggcgccc cggggcgcgg
     3181 gggcctgggc gcgctgaggc tgcggttcct gcttgcggcg cgccagaatg gcgggagcgg
     3241 gcgggccgta gaattttgcg cccagctcgc cggcggggat gatgcggaaa ccgagcacat
     3301 tcagcgtcgg cgccagctgg tccggcttca accccatgcg gctgccgaga ttgggcggca
     3361 gcaatatggg atgcttgcgc agcagataat gcagctcgcg cgtgatgcgc tccaccacat
     3421 ccagccggat catgatcggc ccggcctgca cccagcccat ggcgagggcg aaatccgggc
     3481 cccaattatt gggcatcggc gcgctcacca acccggcatt gggcagaggc ggcgggttgc
     3541 ggtcgtgcca cacaccccag aacagagcgc gcagccgcgc cgcgcccggc ttgagggcgg
     3601 cggggagata gatggcgaaa cggccgagat cgatgccgaa tttcttcgcc tcttctcgca
     3661 aggtctgcgc caccggctcc ggctccagca cgccgccgga ttcgctgagg cggtgcacga
     3721 tgccgcgcaa cggcgcgggg gggttttcca tggctttcag cagcgtgccc aggcgctttt
     3781 ccgtctccgt agcgagccaa gcggcgaggc gggcgcgcag gcgctcgcgg gcgaggccat
     3841 ccaggaattc cgaatgcaga atctcgatcc ccggcttgag gaacagctcg gtcttcttca
     3901 gccgggcgat ttttacccct tcccactcca cttggcggtc atcggtgagg gcaaaggcct
     3961 cgtcggcggc ggtttcggcg cgcaggatgc ggcgcggcat ctcctgcgcc aaagcgcggc
     4021 gggcggcgcg gagcaaaatc ttcttctcaa tcccctgggt ggaagggtcg ggatggaact
     4081 ggaatccctc gatgcggcca acctcatggc cttccaccag gaccgtgccg ttattggcca
     4141 ccaccgcctg cagctcttcc gcctcggtct cttccaatcg tctcgtcaaa tgtgccgccc
     4201 tcttatccac aaaccgcgcc atcagcttta cgtgcagcgt atcggaaagc ctatcctcca
     4261 ccgcccgggc gcgcatggcc caggcatcgg cgtccagcat ccaatccgcc cgcgccgtta
     4321 tataggccca aacgcggaca tccgtcagcc tctgcatcag agtgtcgata tcgccatcca
     4381 ttttgtccag cgcctcgatc tcgcgggcaa cccaatcctg gggcaatttc tccgcggcgc
     4441 gtagatggct gaagattttg ccacagagtt ttacatgcga atccgtggcg agcttgcgga
     4501 aatccgggat ctggcagaca tcccacaata attttaccga agctcggccg ctggcctggc
     4561 gggcgatatc cttgtcctgg gccagggcgg cgagggtctg cacatccgcc gcctcgttac
     4621 cgcggatgag gccgaggcgc ggcgggggcg cgttgaggct ttcccgcaaa gcgtaagtgg
     4681 acgaaaaatc cagcgcgtca ttgcgccaga agagctgctc cagcggctcg aattcatgcg
     4741 tctcgatcgc ttccaccaat tcctcgctaa ggggcgggca gtccgcggtg gtgccgaacg
     4801 tgccgtcgcg catgccgcgc ccggcgcgcc cggcgatctg cgccagctcg ggcgcggtga
     4861 gcagccgggg cttatggccg tcgaatttct gcaccccggc gaaggcgaca tggttgacgt
     4921 ccatgttgag ccccataccg atggcgtcgg tggcgacgag gaaatccacc tctttttcct
     4981 ggtagagcgc cacctgcgca ttgcgggtgc ggggcgagag gcgtcccatc accacggcgc
     5041 agccaccccg gcggcggcgc accgcctcgg cgatggcgta gacttccgcc gccgagaagg
     5101 cgacgatggc cgagcgcggc ggcagacggg agagttttac cgggccggcg taggtgagcc
     5161 gggagaggcg ggggcgggtt tcgatttccg cgtaggggat gaggcgtttc agcagcgggc
     5221 ggatggtgtc cgcgcccaga aacatggtct ccaccatgcc gcgggcattg agcaaccggt
     5281 ccgtaaaaat atggccgcgg tcggggtcgg cgcagagctg gatttcgtcc acggcgagaa
     5341 attccaccgg ccggtcgagc ggcatggcct ccaccgtgca ggcaaaccag cgcgcgccgg
     5401 ggggcacgat tttttcctcg ccggtgatga gggcaacgtt gcggatgccc tttgctgtca
     5461 ccatacggtc ataattctca cgcgccagca ggcggagcgg aaagccgata atgcccgaat
     5521 gatgggcgag cagacgctcc atggccagat gcgtcttgcc tgtattggta ggccccagca
     5581 cggcttttac acgcggctgg agaagtagtc cggacatggg gggaatttag gggttttggg
     5641 gggggatgca agttggaacc gaaagcgtca tccattctgc gcgtttttac ccttaacttc
     5701 cttctcggtt tccgttttca ttttccccca aggagtggat gatacaaacc acttttctaa
     5761 ttcagcttct ttttctaggg taacgacctt tttcgtcggg tctaacggac ttcgtggaag
     5821 caatctgcgt ccaaaaagat cgcccaataa aaggttttgc agttccacag tcagatcttc
     5881 tgagtaggct gtggcgtctc ctagagaatc gagcaatttt tcgcttaaat tttttattgt
     5941 gtttatttcg gtcaatgttg gaggagcata tggaagaata catcccccag gaccatccac
     6001 cggaagcgcc cgcaacaaat ggctgaataa atctgaatac attagccctc ttgtatcatg
     6061 taaaacagtg ctcagggcgg ttcgaaaaat gagcaatcgt ggatcaatga tgcgccgatt
     6121 ctcaatcaga aaaatcactt tgattgtcgc atctgtgaac tgttcgtatt tagcggcgag
     6181 aaaaggccag cgtgttgatg gaggaacgta tttagccccc attctgatag cggagtcgac
     6241 gcctcttagc tgaacatcca taattcggaa tgcggttgaa agtgcaatcg ccgcatctga
     6301 cattgctctg caaacaagca gagcatcttc atacattgcc gctttcagct ttcgcttttc
     6361 gttatcaaca atcgcacgac gggattgact gccttgtgca cgaatctgaa ttataactgc
     6421 actgaatcca aaaaatgcag ctatcagcgt tgaggccgca cctatcaacg cagcctttat
     6481 tcccacatca agatggtgcc aataccccac aaaactcatg ccattagccc atttttatga
     6541 atagcctaat ctagtgaaac acccgctcac cccacaacca cccccacccc atcctcctgc
     6601 aacccccacg ctagcccccc ctccggcgcc tggtccgtca ccagcgtcgc cacctgccgc
     6661 caggccgcgt agcgggcggt gaaaacgcgg tcgaacttgg aatgatccgc cgtgatgatg
     6721 gtttgcgcac cgcgcgtcac catggcggcg tagacggcgg cgctttcggt cgaggcgtcg
     6781 ttggggcctt cggcggtgag gccggaggcg ccgagtaccg tgatgtccgc atgcaaagtc
     6841 tgcaaaaagg cgacggcatg gccgccgagg gtggtgcctt cggtggcaaa atattcgccg
     6901 ggcaggagca gaattttgat cgtcgggttg gccgccaggg ccgaggcgac gccgaaggaa
     6961 tgggtgacga ccaggagatc gcgcaggcgc gccgccacct catgcgccac atgcacaacc
     7021 gtagagcccg agccgagaat gagcactttt gcccccgcca gcagcggaat tgtggcggcg
     7081 gcgatgcggc ggcgctcggc cacgaacatg gcatggcgct cgatcaccgc cggctcctgg
     7141 cccagcgccc gcaccgcgcc gccataggtg cggttgagca gcccggcgcc ggtcagcgcg
     7201 tcgaggtcgc ggcggatggt ctcggtggag acatgcagct gctgcgccag ctcggccacg
     7261 cgcaaagagg gggcaatgtc gagcgtggcg aggatctggc gctggcgcg
//
LOCUS       DASQCV010000624         2498 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_631310, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000624 DASQCV010000000
VERSION     DASQCV010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2498)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2498)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2498
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_631310"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..1295)
                     /locus_tag="VEQ16_09665"
     CDS             complement(51..1295)
                     /locus_tag="VEQ16_09665"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase dimerization domain-containing
                     protein"
                     /protein_id="HYP64145.1"
                     /translation="MSAQGPGAPHLAKLVLQGEGQAEAVAITGFIFMARDISNAYLVT
                     TADGDVMVNIGFLTSGARNKAVLAPHRTGALRHIILTQSHADHYGALDSFREPETKII
                     VQAQFLENMHDMNSLQPFFGPRTRKLWGTTVKFDGPPPRPPEVVPDIIVDKEYVFEQG
                     GRRFEILSTPDGETTDSLTVWMPKEKVVFTGNLFGPVFLSMPFLNTLRGDKPRLVRTY
                     LKSLDTVRQLGAEILITGHGEPIVGTERIRTDLDRMHAAVSWVRDYTLAGMKAGKDVH
                     ALMREVKLPDEIRIGEFHGKVSWAVKSIWEEYSGWFHYDSTTSLYGVPRSSVDADVVA
                     MAGGTEVIAARARARLDEGKPLEAIHLVEIVLGVEPKNVNALTVKRDASARLLELSGG
                     TNLSETMWLRSEIREIEERLGK"
     gene            complement(1292..2311)
                     /locus_tag="VEQ16_09670"
     CDS             complement(1292..2311)
                     /locus_tag="VEQ16_09670"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYP64146.1"
                     /translation="MRVLNIHGVNDVRLDPKTPTPHGETDVVVKVKACGICGSDLTYI
                     KFGGIHRPEGGVTPIGHEAAGEVVAVGAGVKDAFVGQHVVINPMNTPSFIGSGGPEGA
                     FCDEVLVRDAKVGDSLLPIEKDLPFEIAALAEPLAVALHGVNRSHAKPGDKIVVFGCG
                     PIGLAMVLWLVDRGVEDVIAVDLAPERLVRAKEMGAKHVINAATENLRERLFAIHGSH
                     HYFGREVANTDAFIDAAGGPNILSDVISFIRYQGRMVITAAYMKPVTISLGSMLTTEM
                     ELTTAVGYPTEMPEVVAALPRLQEKLGKLISHRFNFDDVLKGFEVAATPQSAKVMIKF
                     EDQPA"
     gene            complement(2384..>2498)
                     /locus_tag="VEQ16_09675"
     CDS             complement(2384..>2498)
                     /locus_tag="VEQ16_09675"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP64147.1"
                     /translation="GYPKDFEGIGAYLASDASAYLTGETITIDGGYMVRPM"
BASE COUNT          500 a          897 c          637 g          464 t
ORIGIN      
        1 aataaaaacg ccgccgggtc tccctggcgg cgtttcaaaa agcacggccc ctacttgccc
       61 agcctctcct caatctcccg tatctccgag cgcagccaca tcgtctcgct cagattcgtc
      121 ccgcccgaaa gctccagcag ccgcgccgaa gcatcccgct tcaccgtcag ggcattcaca
      181 tttttcggct ccacgccaag cacaatctcc accagatgaa tcgcctccaa cggctttccc
      241 tcatccagcc gcgctcgcgc ccgcgcggcg atcacttccg tgccgcccgc catcgccacc
      301 acatccgcat ccacgctgga ccgcggcacg ccatagagcg aagtcgtgga atcataatga
      361 aaccacccgg aatattcctc ccaaatgctc ttcaccgccc acgacacctt gccatgaaac
      421 tcgccaatcc gaatctcatc cggcagcttc acctcgcgca tcagcgcatg cacatcctta
      481 cccgccttca tgccggccag cgtataatcc cgcacccagg acaccgccgc atgcatccgg
      541 tcgagatcgg tccgtatccg ttccgtccca acaatcggct ccccatgccc tgtaatcaga
      601 atctccgcac ccagctgccg caccgtatcg agcgacttca ggtacgtccg caccagccgt
      661 ggcttatctc cccgcagcgt attcaaaaac ggcatggaca aaaacactgg cccgaataga
      721 ttgccggtaa acaccacttt ctctttgggc atccaaacgg tcaaagaatc cgtggtctcg
      781 ccatcaggtg tggacaaaat ctcaaaccgc cgcccgccct gctcgaagac gtactcttta
      841 tcgacgataa tatccggcac cacctccggc ggccgcggcg gcggcccgtc gaatttcacc
      901 gtcgtacccc acagcttgcg cgtccgcggc ccgaagaaag gctgcaggga attcatatca
      961 tgcatattct ccaggaactg cgcctggacg atgatctttg tttccggctc cctgaaacta
     1021 tccagcgcgc cataatggtc agcatggctc tgcgtgagaa taatatgccg cagtgccccc
     1081 gtccggtgcg gcgccagcac cgccttgttg cgcgccccgg atgtcaggaa gcctatattg
     1141 accatgacat ccccatccgc cgtggtgacg agataggcgt tggagatgtc acgcgccatg
     1201 aagatgaagc cggtgatcgc caccgcctcg gcttgcccct cgccttgcag cacgagcttg
     1261 gcgagatgcg gcgcccccgg cccctgcgcg ctcacgcagg ctgatcctcg aacttgatca
     1321 tcaccttggc ggattgcggc gtcgccgcaa cttcaaaccc tttcagcaca tcgtcgaaat
     1381 tgaaacgatg gctgatgagc ttgccgagct tttcctgcag ccgcggcagt gccgccacca
     1441 cctccggcat ctcggtcgga taacccacgg cggtggtcag ttccatctcc gtcgtcagca
     1501 tcgagcccag gctgatcgtc accggcttca tgtaagcagc ggtgatcacc atgcggccct
     1561 gatagcggat aaagctgatc acatcggaca gaatattcgg cccgccggcg gcatcgatga
     1621 aggcatccgt attcgccacc tcgcgcccga aataatggtg cgagccatgg atcgcgaaga
     1681 gccgctcgcg cagattctcg gtcgcggcat tgatcacatg cttcgccccc atctccttgg
     1741 cgcgcaccag ccgctccggc gccagatcga ctgcgatcac atcctcaacc ccgcgatcca
     1801 ccagccacag caccatggca agcccgatcg gcccgcagcc gaacaccacg atcttgtcac
     1861 caggcttggc atgcgagcgg ttcacgccat gcagcgccac ggccagcggc tccgcgagcg
     1921 cggcaatctc gaaaggcaga tccttctcga tgggcagcag cgaatccccc accttggcat
     1981 cgcgcaccag cacctcgtca cagaacgcgc cttccggccc gccgctgccg atgaagctcg
     2041 gcgtgttcat cgggttgatg accacgtgct ggccgacaaa ggcatccttc acgcccgcgc
     2101 ccacggccac cacttcgccc gccgcctcat ggccaatcgg tgtcaccccg ccttccggcc
     2161 ggtggatgcc gccaaacttg atgtaggtga ggtcgctgcc acagatgccg caggccttca
     2221 ccttcaccac cacatccgtc tcgccgtgcg gggtcggggt cttggggtcg aggcggacat
     2281 cgttgacgcc gtgaatattg aggacgcgca tggtttttct cccagtcctt tatataccaa
     2341 agaaaaaggg ggccttcacc gtccgatgaa ggccccctca gcttcacatc gggcggacca
     2401 tatagccgcc gtcaatcgtg atggtctcgc cggtgaggta ggcggaagca tcgctggcca
     2461 gataggcgcc gatgccctcg aaatccttgg ggtacccg
//
LOCUS       DASQCV010000625         4628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1627790, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000625 DASQCV010000000
VERSION     DASQCV010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4628
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1627790"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1343)
                     /gene="yidC"
                     /locus_tag="VEQ16_09680"
     CDS             complement(<1..1343)
                     /gene="yidC"
                     /locus_tag="VEQ16_09680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HYP64148.1"
                     /translation="MDQKRLLLALTFSFAVLGIFTFIQDKFFPHPQPTAQTAQVSQSA
                     PAQTAAPGAAAAGAEVPPAGPRLTIDAPLMQGSIGLTGAVFDDITLTSYRETVSPDSP
                     LVQILGRRGGPTPTYAQFGWSAAPGVNVPGDSTVWTASGGTLTPSSPVTLSWDNGQGL
                     TFQLLVSVDDKYMFTVRQSVINHGNAPVSLYPWSRVTRDYKPKEQSSWVLFDGPLGVF
                     NGTLHQVGYKDLKSAAQASGAPGFTSSGPGGWAGVTDKYWLTAVAPDQNAIMNATMSY
                     GTVRDGDGSAFQTSFIAANAVTAAPGGSADFTSHLFTGAKVVRILDFYSRQYGIPNFY
                     KAVDFGHLYILTKPIFFALDYLNGITGNFGLAILIFTVGVKLLFFPLASYSYRSMARM
                     KAIQPKITALREQYKEDNVKLQQATMDLYKAEKINPASGCLPMLVQIPVFFSLYKV"
     gene            complement(1349..1588)
                     /gene="yidD"
                     /locus_tag="VEQ16_09685"
     CDS             complement(1349..1588)
                     /gene="yidD"
                     /locus_tag="VEQ16_09685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HYP64149.1"
                     /translation="MSPAAAMLSGAVRVYELTLRPVIGANCRFFPSCSCYAREALATH
                     GALRGSALAAGRILRCHPFNPGGYDPVPPPSSKDS"
     gene            complement(1585..1938)
                     /gene="rnpA"
                     /locus_tag="VEQ16_09690"
     CDS             complement(1585..1938)
                     /gene="rnpA"
                     /locus_tag="VEQ16_09690"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HYP64150.1"
                     /translation="MAGQNLPKRLQRRSDFLRLAAQGRKLVRPGFLLQAAAGTPELRV
                     GFTATKKLGNAVTRNRAKRRLREAARLVLAERPDLAAELVLVARRETGSIEFAKLRRN
                     LEAALDEALPREAQS"
     gene            complement(1970..2104)
                     /gene="rpmH"
                     /locus_tag="VEQ16_09695"
     CDS             complement(1970..2104)
                     /gene="rpmH"
                     /locus_tag="VEQ16_09695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005980833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HYP64151.1"
                     /translation="MKRTYQPSKLVRKRRHGFRARMATVGGRKVLANRRAKGRAKLSA
                     "
     gene            2272..2709
                     /locus_tag="VEQ16_09700"
     CDS             2272..2709
                     /locus_tag="VEQ16_09700"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HYP64152.1"
                     /translation="MSYENFSASQKEVVAALRQMSAAATAQGLEKELVELVKIRISQI
                     NGCAFCLQFHLKLARQLGVEERKLGLLAAWRESGAFSAREMAALAYGERLTLLGHNHL
                     HTEDQTVADAEFSAGEIEHLTIAIATINAWNRIAAALHFSPPA"
     gene            2750..3676
                     /locus_tag="VEQ16_09705"
     CDS             2750..3676
                     /locus_tag="VEQ16_09705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HYP64153.1"
                     /translation="MVLTASSSRTVLALQGGGAHGAFSWGALDRLLESGFSFSAVSGV
                     SSGAMIAAMAVQGFVRGGHKGARNAMAQLWERVAAAHIFGSAMPATPLDWMWGKGVEL
                     GNELAMTGLTQALRLFSPGQLNPLGQNPLAPVLKDLLDVEALRAPEAPKLFVGATDVE
                     SGEAKVFTNHEIGVRHLLASACIPMMVPTVEINGRHYWDGGYSCNPPLAPVLSSRPEL
                     LILIRAQPRRRQGVPSSTADIVHRLHELAFQAPLEAELSLLPRHTRLMDISADAALAR
                     HPLSSKTNTEKGFLDDLFAAGRAAAAAALHMA"
     gene            3673..>4628
                     /locus_tag="VEQ16_09710"
     CDS             3673..>4628
                     /locus_tag="VEQ16_09710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HYP64154.1"
                     /translation="MNLHRRGRQRFDLFGDSLSGRVLWLTVAVILGIELMVLMPVLGQ
                     LRNDWLWGRVHHAELVIYTIAVTGQPVSPAVQDQMLSYAGVSSINYQAPGQAPLSLQS
                     STPLPPPASAIDLANESIGESTWIALMHIAGQGAPVVDLRASSTLTPGASIEVLASTA
                     PLTQELRSDVAHVLTLTVIVALVTGLLVFAILDRLLVRPMRVITTSIINFREDPEQDE
                     ASDLAWLAARPEDDISTAARELKIMQEEMRAALWRNARLAAVGTSVAKISHDLRNILS
                     TALLVADRLQSVNDPTVQRATRTFIPAVERAAQLVTRTVDFAR"
BASE COUNT          797 a         1375 c         1653 g          803 t
ORIGIN      
        1 accttgtaga gcgagaagaa gaccgggatc tgcaccagca tgggcaggca gcccgaggcc
       61 gggttgatct tctcggcctt gtacagatcc atcgtggcct gctgcagctt gacgttatcc
      121 tccttgtact gctcgcgcag ggcggtgatt ttcggctgga tggccttcat gcgcgccatg
      181 gagcggtagg aatagctcgc cagcgggaag aagagcagtt tgacgcccac cgtgaagatg
      241 agaatcgcca ggccgaaatt gccggtgatg ccgttcaggt aatcaagcgc gaagaagatc
      301 ggcttggtga ggatgtagag atggccgaaa tccaccgcct tgtagaaatt ggggatgcca
      361 tattgccgcg aatagaagtc gaggatgcgc accactttgg cgccggtgaa gaggtgcgag
      421 gtgaaatccg cgctgccgcc gggggcggcg gtgacggcat tggcggcgat gaagctggtc
      481 tggaaggcgc tgccgtcgcc gtcgcgtacc gtgccgtaag acatggtggc attcatgatg
      541 gcgttctggt cgggcgccac ggcggtcagc caatatttgt cggtgacacc ggcccagccg
      601 ccggggccgg atgaggtgaa gccaggggca cccgaagcct gggcggcgct cttgaggtcc
      661 ttatagccga cctggtgcag cgtgccgttg aacacgccga gcgggccgtc gaacagcacc
      721 cagctgctct gctccttggg cttgtagtcg cgcgtgacgc gggaccaggg atagagcgag
      781 actggcgcgt tgccatggtt gatgacgctc tggcgcacgg tgaacatgta tttgtcgtca
      841 accgagacga ggagctggaa ggtcaggccc tggccgttat cccaggagag ggtgaccggg
      901 gaggacgggg tgagtgttcc accggaggcg gtccagacgg tggaatcacc cggcacgttc
      961 acgccggggg cagcgctcca gccgaactgg gcataggtgg gggtaggccc gccgcggcgg
     1021 ccgaggatct gcaccagggg cgagtccggg gagacggtct cgcgatagga ggtcagagtg
     1081 atgtcgtcga acaccgcgcc ggtgaggccg atgctgccct gcatcagcgg ggcgtcgatt
     1141 gtcagacgcg ggcccgcggg cgggacttcc gcgccggccg ctgctgcgcc gggcgcggca
     1201 gtttgcgcgg gcgcgctctg gctcacctgc gccgtctgcg ccgtgggctg cgggtgcggg
     1261 aagaacttgt cctggatgaa ggtaaagatt cccagcacgg cgaaggaaaa cgtaagggcg
     1321 aggagcaggc gcttctggtc catgaaactc aggaatcctt ggatgaaggg ggtggcaccg
     1381 ggtcgtagcc gcccggattg aaaggatggc agcgcaggat gcggccggcg gcgagtgcgg
     1441 aaccgcgcaa ggcgccatgg gtggccaggg cctcgcgcgc atagcagctg caggagggga
     1501 agaagcggca attggcgccg atgacggggc gtaaggtcag ctcatagacg cgcacggcac
     1561 ccgaaagcat ggcggcggcc gggctcatga ctgggcctcg cggggcagag cctcgtcgag
     1621 cgcggcttcg agattgcggc gcaatttggc gaattcgatg ctgccggtct cgcggcgggc
     1681 gacaagcacc agctcagcgg cgaggtccgg gcgttcggcc agaacgagac gcgccgcctc
     1741 acgcagccgg cgcttggcgc ggttgcgcgt gacggcgttg ccgagtttct tggtggcggt
     1801 gaagcccacg cgcagctcgg gcgtacccgc ggcggcctgg agcagaaaac ccggccggac
     1861 gagcttgcgc ccttgcgccg cgaggcggag gaaatcgctc cgccgctgca ggcgcttggg
     1921 caggttttgc ccggccatgg ccgcctccgc gcgccgcctc aagcgcggct taggcggaga
     1981 gcttggcgcg gcccttggcg cggcggttgg ccagcacctt gcggccgccg accgtcgcca
     2041 tgcgggcgcg gaacccatgc cggcgcttgc ggacgagttt ggaaggttgg taggtccgtt
     2101 tcacggtatt cactccggca aaaaataaag acaaataggg ttggcccggg cagttacccg
     2161 ccgggcagcg atggcggggt atagtcggga gaggcttgcg ccgtcaatgc ggggattggc
     2221 cgcatctgcc tgccatgctg agatcacagc acgaaaagcg gagaaaaact catgtcttac
     2281 gagaatttca gcgccagcca gaaagaggtt gtggcggcgc tgaggcagat gagcgcggcc
     2341 gccacggcgc aggggctgga gaaggagctg gtggagctgg tgaaaatccg catctcgcag
     2401 atcaatggct gcgccttctg cctgcaattc cacctgaaac tggcccgcca gctgggggtg
     2461 gaggagcgca aattggggct actggcggcc tggcgcgaat cgggagcatt ctcggcgcgg
     2521 gagatggccg ccctggccta tggcgagcgg ctgaccctgc tcgggcataa tcatttgcac
     2581 actgaagacc aaactgtggc ggacgcggaa ttttccgctg gcgagatcga gcatctgacc
     2641 atcgccattg cgaccatcaa tgcctggaac cgtattgcgg ctgcactaca tttttcacca
     2701 ccggcctgaa acgcttgctc ttaaacgaaa ctaggggcag cttacaccca tggttctaac
     2761 cgcctcttcc tcccggaccg ttctggcgct tcaaggtggc ggtgcccacg gcgcctttag
     2821 ctggggggca ttggacaggc tgctcgaatc cggcttctcc ttcagcgcgg ttagcggcgt
     2881 gtcctccggc gcgatgattg cggccatggc ggtacagggc ttcgtgcgcg gcggccataa
     2941 gggcgcgcgc aatgccatgg cccagctttg ggagcgcgtg gcggcggcgc atattttcgg
     3001 cagcgccatg ccggccacgc ctttggactg gatgtggggc aaaggcgtgg aactgggcaa
     3061 tgagctggcc atgaccgggc tcacccaagc gttgcgcctg ttcagtcccg gccagctcaa
     3121 cccgctgggg cagaatccgc tggcaccggt gctgaaggat ttgctggatg tggaggcgct
     3181 gcgcgccccc gaggcgccga aactcttcgt cggcgctacc gatgtggaat cgggcgaggc
     3241 gaaagtgttc accaatcacg agatcggggt gcggcatctg ctggcctcgg cctgcatccc
     3301 gatgatggtc ccgaccgtgg agatcaatgg gcggcattac tgggatggcg gctatagctg
     3361 caatccgccg ctcgcgccgg tgctgagctc gcggccagag ctgcttatcc tcatccgcgc
     3421 gcagccgcgc cggcgccagg gcgtgccgag cagcaccgcc gatatcgtgc acaggctgca
     3481 tgagctggcg ttccaggcgc cgctggaggc ggaactttca ctcctgccgc gccacaccag
     3541 gctgatggat atttccgccg acgcggcact ggcgcggcat ccgctttcgt ccaagaccaa
     3601 tacggagaag ggttttctcg acgatctgtt cgccgccggg cgggcagccg cggcggcggc
     3661 cctgcatatg gcatgaattt gcaccgccgc ggccgtcagc gttttgattt gtttggggat
     3721 tccctctcgg gccgcgtgct gtggctgacc gtggcagtga ttctgggcat tgagctgatg
     3781 gtgctgatgc cggtgctagg gcagctccgc aatgactggc tgtggggacg ggtgcaccat
     3841 gccgagttgg tgatctacac catagcggtg accggccagc cggtgagccc ggcggtgcag
     3901 gaccagatgc tgagctatgc cggggtttcc agcatcaatt accaggcgcc gggccaggcg
     3961 ccgctcagcc tgcagagttc cactcccctg ccgccgccgg cgagcgcgat cgacctggcc
     4021 aatgagagca tcggcgagag tacctggatc gccctgatgc atattgccgg gcagggtgct
     4081 ccggtggtgg atttgcgcgc gtcctcaacc ctgacgccgg gcgccagcat cgaggtgctg
     4141 gccagcacag cgccgctgac ccaggagctg cgcagcgatg tggcgcatgt gctcaccctc
     4201 acggtcattg tcgcgctagt caccgggctg ctggtgttcg ccatactgga cagactgctg
     4261 gtgcggccga tgcgggtgat caccacctcc atcatcaatt tccgcgagga cccggagcag
     4321 gacgaggcct ccgacctcgc ctggctggca gcgcggccgg aggatgacat ctctactgcc
     4381 gcgcgtgagc tgaaaatcat gcaggaggag atgcgggcgg ccttgtggcg caatgcgcgc
     4441 ctggccgccg tgggcacctc ggtggcgaag atcagccatg atctacgcaa catcctctcc
     4501 accgccctgc tggtggcgga ccggctgcag agcgtgaacg acccgaccgt gcagcgtgcc
     4561 acccgcacct ttattcccgc cgtggagcgc gcggcgcagc tggtgacacg cacggtggat
     4621 ttcgcgcg
//
LOCUS       DASQCV010000626         1682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2952309, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000626 DASQCV010000000
VERSION     DASQCV010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2952309"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1105
                     /locus_tag="VEQ16_09715"
     CDS             <1..1105
                     /locus_tag="VEQ16_09715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010509966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GMC oxidoreductase"
                     /protein_id="HYP64155.1"
                     /translation="FRDAAAQYGVRKIEDFNGGDNEGSSYFQVTQKRGRRWSAADAFL
                     RPALKRANLRVQTNALVDRLVIEEGRATGVLFSLDGKPFVAQARGEILLSGGAIGSPV
                     VLQRSGIGDAETLQAVGIAPVRHLPGVGGNLHDHLQIRCAYRVENVPTLNQRAGSMFG
                     KGLIGLEYLLNRSGPMSMAPSQLGIFTRSHERFETANLEYHVQPLSLAAFGGALDEFP
                     AFTASVCNLRPTSRGYVRVASAAPREAPVIHPNYLDTEDDKQVALEAVKTTRRIVSQP
                     AMARYKPVEFRPGSTNDDAELLQGIGNISSSIFHPVGTAAMGSVVDAQLRVQGVEKLR
                     VVDASVMPNITSGNTNAPVMMIAEKAAAMILGG"
     gene            complement(1433..>1682)
                     /locus_tag="VEQ16_09720"
     CDS             complement(1433..>1682)
                     /locus_tag="VEQ16_09720"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007117086.1"
                     /note="Catalyzes the synthesis of acetoacetyl coenzyme A
                     from two molecules of acetyl coenzyme A. It can also act
                     as a thiolase, catalyzing the reverse reaction and
                     generating two-carbon units from the four-carbon product
                     of fatty acid oxidation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HYP64156.1"
                     /translation="DLFEVNEAFAVVVEKFIRDLNIDREKINVNGGAIALGHPIGATG
                     AVLIGTALDELERRDAKRALITMCAAGGMGPAIIIERV"
BASE COUNT          291 a          449 c          606 g          336 t
ORIGIN      
        1 gttccgcgac gccgccgcgc aatatggcgt gaggaagatc gaggacttca atggcgggga
       61 taatgaaggc tccagctatt tccaggtgac acagaaacgc gggcggcgct ggagtgcggc
      121 ggatgcgttt ctgcgcccgg cgctgaagcg ggcgaatctg cgcgtgcaga ccaacgcgct
      181 ggtggacagg ctggtgattg aagaagggcg cgcgacgggg gttttgtttt cgcttgatgg
      241 gaagccgttt gttgcccagg cgcgtgggga aattctgctt tcgggcgggg ccatcggctc
      301 gcctgtggtg ctgcagcgct cgggcattgg cgatgcggag acgctgcaag cagtcgggat
      361 tgcgcctgtg cggcatctgc cgggcgtagg cgggaatttg cacgaccatc tgcaaatacg
      421 ctgtgcctat agagtggaga atgtgccaac actgaatcag cgggcgggct ccatgtttgg
      481 aaaaggcctc atcgggttgg aatatttgct gaatcgttcc gggccgatgt ccatggcgcc
      541 gagccagctg gggattttta cgcgctcgca cgagcggttt gagacggcca acctggaata
      601 tcatgtgcag ccgctgagcc tcgccgcgtt tggcggggcg ctggatgaat tccccgcttt
      661 taccgccagt gtttgcaatt tgcgccccac gagccggggg tatgtgcgcg ttgcctcggc
      721 ggccccgcgc gaggcgccgg tgattcatcc caattacctg gatacggagg acgacaagca
      781 ggtggcactg gaagctgtga agaccacgcg ccggattgtg agccagccgg cgatggcgcg
      841 gtacaagccg gtggaattcc ggcctggaag caccaatgac gatgcggaat tgctgcaggg
      901 gattggcaat atctcgtcca gcatttttca cccggtgggt acggcggcga tgggcagcgt
      961 ggtggatgcg caactgcgcg tgcaaggcgt cgaaaaattg cgcgtggttg atgcctcggt
     1021 gatgccaaat atcacctcgg gcaacaccaa tgcgccagtc atgatgatcg ccgagaaagc
     1081 ggctgcgatg atcctcggcg ggtaacgcag gggttttgct cctgtatccc atcagggtgc
     1141 tgccttggac cctggctgga gctggggctt tgagtcctta gcttgggtat gaggggcatc
     1201 ccacccgtca tcgcgaggga acatctatct gctggggtgt ggcccggaag atggatcgcc
     1261 acgctgcgct cgcgatgacg ggtgggatgc ccctcatacc caattaatgg gggtctgggg
     1321 ccgtcgcccc aaaggggcgc cgattcattg agtaggcgcg cctccggcgc gacggcccca
     1381 gcgggtccag ggcagagtcc tggtgggggt ccagggggca agccccctgg ccttacacgc
     1441 gctcgatgat gatggccggg cccatgccgc cggcggcgca catggtgatg agggcgcgtt
     1501 tggcgtcgcg gcgttcgagt tcatcgaggg cggtgcctat gaggaccgcg ccggtggcgc
     1561 cgatggggtg gccgagggcg atggcgccgc cattcacgtt gatcttttcg cggtcgatgt
     1621 tgaggtcgcg gatgaatttt tccacgacga cggcgaaggc ttcgttgact tcgaagagat
     1681 cg
//
LOCUS       DASQCV010000627         1931 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1957114, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000627 DASQCV010000000
VERSION     DASQCV010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1957114"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1563
                     /locus_tag="VEQ16_09725"
     CDS             <1..1563
                     /locus_tag="VEQ16_09725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64157.1"
                     /translation="PKSALNGYGCSHRPRPWAVTFASSTASSSSERGYVAADQARLAV
                     TAALLRGTSPKRAIGTCVESARRGITKAFAMQADERVILAASGTDTELLALALTHLAG
                     QNQPILNILIAPEETGRGVPLAAKGRHFAVDTALGHDVTFEAPVCGFRADTEVASIAL
                     RETSGAVRPQDVVEAEIEAVLAAGIAAQKFVILHGLDLSKTGLLAPSPAFLAKLRGTY
                     GDKFDIVVDACQARLSPAAIRAYLGLDAVVLITGSKFFTGPPFAGAALLPAIIAARLQ
                     RGTLPGGLAAYFNRGEFPADAACAAPLPEGGNYGLALRWHAALAEIKALLRTPPARRA
                     AILQGFAAVVRKAVAAQPALMLLDAPPIARIATDEEWERLPSIFTFSLQAPHAPERCL
                     TPAEARNVYMWLNTDLSALLPEDAAIAARICHIGQPVPLAQPRGQEGQQPRGDGQMGA
                     LRVSAGARLISGEPSHRPLGPKARLAREFTDLALVFDKISLILRHWDQLTAANPAPTY
                     RPVNARPRALVQ"
     gene            complement(1630..>1931)
                     /locus_tag="VEQ16_09730"
     CDS             complement(1630..>1931)
                     /locus_tag="VEQ16_09730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64158.1"
                     /translation="VVYLHDFYAGKLLQTYLPADKQALVLNDNASDLNRAAQALSQGK
                     RVWAVYGLAGQGAGATESQDYRQNQKVFGNPLAVQQAGNRIVIALYGPDNLLAAQ"
BASE COUNT          302 a          749 c          572 g          308 t
ORIGIN      
        1 ccgaaaagcg cgctgaacgg ctatggctgc agccacaggc cgcgcccctg ggccgtcacc
       61 ttcgcctcct ccaccgcctc ttccagttcc gagcgcggct atgtcgccgc cgaccaggcc
      121 cgccttgccg tcaccgccgc cctgctgcgc ggcacatcgc ctaaacgcgc catcggcacc
      181 tgcgtcgaat cagcacggcg cggcatcacc aaggccttcg ccatgcaggc ggatgagcgc
      241 gtcatcctcg ccgcctcggg cacggatacc gagctactgg cgctcgccct cacccatctc
      301 gccgggcaga atcagcccat cctcaatatc ctcatcgccc cggaagaaac cgggcgcggc
      361 gtgccgctcg cggccaaggg gcggcatttc gccgtggata ccgcactcgg gcatgacgtg
      421 actttcgaag cgccggtctg cggcttccgc gccgatacgg aagtggccag cattgccctg
      481 cgcgaaacct ccggcgcggt gcggccgcaa gacgtggtcg aggcggagat agaggcagta
      541 ctcgccgcgg ggatcgcggc gcagaaattc gtcatcctgc acgggctcga cctctcgaaa
      601 acagggctgc tcgccccctc gcccgccttt ctcgccaagc ttcgtggcac ctatggcgat
      661 aaattcgata tcgtcgtgga tgcctgccag gcccgcctct cgcccgccgc catccgcgcc
      721 tatctcgggc tggacgctgt ggtgctcatc accggctcca aattcttcac cggcccgccc
      781 ttcgccggcg cggcgctgct gcccgccatc atcgccgcca ggctgcagcg cggcacgctg
      841 ccgggaggcc tcgccgccta tttcaaccgc ggcgaattcc ctgccgacgc tgcctgcgcc
      901 gcgccgctgc ccgaaggtgg aaattacggc ctggccctgc gctggcacgc cgccttggcg
      961 gaaatcaagg cgctgttgcg cactccaccc gcgcggcgcg ccgccatcct gcaaggcttc
     1021 gccgccgtgg tgcgcaaagc cgtcgccgcg caaccggccc tcatgctgct cgacgccccg
     1081 cccatcgccc gcatcgccac ggatgaggaa tgggaacgcc tgcccagcat cttcaccttc
     1141 tcgctgcagg ccccgcacgc gccggaacgc tgcctcaccc cggcggaagc ccgcaacgtc
     1201 tatatgtggc tgaacaccga cctctccgcc ctgctgccgg aagatgccgc catcgccgcg
     1261 cgcatctgcc atatcggcca gcccgtgccc ctggcgcagc cgcgcggcca agaaggccag
     1321 cagccgcgcg gcgatggcca gatgggcgcg ctgcgcgtct ccgccggcgc ccgccttatc
     1381 tccggcgaac cctcgcaccg ccccctcggc cccaaagcca ggctcgcccg cgaattcacc
     1441 gacctcgccc tcgtcttcga caaaatcagc ctcatcctcc gccactggga ccagctcacc
     1501 gccgccaacc ccgcccccac ctaccgcccc gtcaacgcac ggcctcgcgc actggtgcag
     1561 taggcaccag ggggtgtggc tgaaagacaa gggagcttcg ccccttgctt ttcctgcaac
     1621 acccgagccc tactgcgcgg cgagcaggtt atccgggccg tagagagcga tgacgatgcg
     1681 gttgccggcc tgctgcacgg ctagggggtt accgaacact ttctggttct ggcggtaatc
     1741 ctggctttca gtggcgccag cgccctggcc tgcgaggcca tacacggccc agacgcgctt
     1801 gccctggctc agagcctgtg cggcgcggtt gaggtcgcta gcgttatcgt tgagcaccag
     1861 cgcctgctta tcggccggca gataggtttg cagcagcttg ccggcataga aatcatgcag
     1921 atagacgaca t
//
LOCUS       DASQCV010000628         2333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1628287, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000628 DASQCV010000000
VERSION     DASQCV010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1628287"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..819)
                     /locus_tag="VEQ16_09735"
     CDS             complement(<1..819)
                     /locus_tag="VEQ16_09735"
                     /inference="COORDINATES: protein motif:HMM:NF012263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HYP64159.1"
                     /translation="MSAQTKTSWAATRLPCLGAICAGLNAKTRAPGAAYFEAFPFLIT
                     VLAAFITLSGIVLSVYYNPWHAFDSVQFITRNVNHGWLIRTYHATGTTLIFALTYLYL
                     FRTILTRSYRAPSEFVWMMSVKLLLVLLLTGWLGFVLTGGAAGYWSLFNATNAALSLG
                     GMPGSVALWFFGGPAGGGTLARLTVFHVLLGASVLLVLWVLHESRKAIAPAAPAKAVA
                     FYPYYVAQYFAALAVLGFIFVLLGFYAPHLGSVAANRIPAEAMAVPLDAGVPWYL"
     gene            complement(831..1388)
                     /gene="petA"
                     /locus_tag="VEQ16_09740"
     CDS             complement(831..1388)
                     /gene="petA"
                     /locus_tag="VEQ16_09740"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR01416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HYP64160.1"
                     /translation="MAEPTAPHAAPGESRRDFLTILTAAAGAVAAGAILWPVIDALNP
                     DASASDAAHLIVNVSDIAEGTAKTVQWGGLPITIRKLSSAEIAANQDELVIPDNLPDP
                     ANFASRVNAGYPSFVVVVGLNTATPCVLEGDAASDPRGDFNGWVCPCDGSEYDPLGRV
                     RKGPATRNLAIPHYTFINPAQIRLG"
     gene            1489..>2333
                     /gene="hemF"
                     /locus_tag="VEQ16_09745"
     CDS             1489..>2333
                     /gene="hemF"
                     /locus_tag="VEQ16_09745"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HYP64161.1"
                     /translation="MSFSPPHHALKTEVADWFARLRDQICAEFEAIEDMAGPNPGRFE
                     RADWDRPGGGGGTRAIIRGQVFEKAGVNISVVEGEFSSEFAARMPGTEAGAKFWAAGI
                     SLVAHPRSPKLPAVHMNTRMLVTAKGWFGGGGDLTPLQPGTAEAVEDAAHFHAAYKAA
                     CDRHDPAYYEKFKAWCDEYFYLPHRNEPRGAGGIFFDYLDSGDAAADFAFTRDVGEAF
                     CAAYVPIAKRRFAEPYTPEEREAQLIRRGRYVEFNLLYDRGTMFGLKTGGNIEAILMS
                     MPPEV"
BASE COUNT          455 a          673 c          831 g          374 t
ORIGIN      
        1 caggtaccag ggcacgcccg catccagcgg cacggccatg gcctcggccg gaatgcggtt
       61 ggcggcgacg ctgccgagat gcggcgcata gaagccgagc agcacgaaga tgaagccgag
      121 caccgcaagc gccgcgaaat attgcgccac gtaataaggg tagaaggcga ccgccttggc
      181 gggggcagcg ggggcaatgg ccttgcggct ctcatgcagt acccacagca ccagcagcac
      241 cgaggcgccg agcagcacat ggaagactgt cagccgcgcc agcgtgccgc cgccggccgg
      301 gccgccgaag aaccacaacg ccacggaccc gggcatcccg cccagggaga gcgcggcatt
      361 ggtggcattg aagagcgacc agtagcccgc cgcaccgccg gtgagcacga agccgagcca
      421 gccggtgagc agcagcacga gcagcagctt gacgctcatc atccacacga actcagaagg
      481 ggcgcggtag cttcgggtga gaatggtgcg gaacagatag agataggtga gcgcgaaaat
      541 cagcgtggtg ccggtggcgt gataggtgcg gatgagccag ccatgattca cattgcgcgt
      601 gatgaactgc accgagtcga aggcgtgcca gggattgtaa tagaccgaca gcacgatgcc
      661 cgagagcgtg atgaacgccg ccagcaccgt aatgagaaac ggaaaggctt cgaaataagc
      721 ggcgccgggg gcgcgggtct tggcattcag cccggcgcag atggcaccga ggcatggcag
      781 gcgggtggcg gcccaggaag ttttggtctg tgcgctcatg atgtgccccc tcagcccagc
      841 cggatctgcg cgggattgat gaatgtgtaa tgcggaatgg cgagattccg cgtcgccggg
      901 cctttgcgta cgcggcccag cgggtcgtac tcgctgccgt cgcaggggca gacccagcca
      961 ttgaaatcgc cgcgcgggtc ggaggcggca tcgccttcca gcacgcaggg cgtggcggtg
     1021 ttgaggccga cgacgacgac gaagctcgga tagccggcat tgacgcggct ggcgaagttc
     1081 gccgggtcgg gcaaattgtc cgggatcacc agctcatcct gattggcggc gatttcggcc
     1141 gaggagagct tgcggatggt gatgggcagg ccgccccatt gcaccgtctt ggcggtgccc
     1201 tccgcgatgt ccgagacgtt gacgatgaga tgcgcggcat cgctggcgga cgcgtccgga
     1261 ttgagcgcgt cgatcacggg ccagagtatc gcccccgccg ccacggcacc ggccgctgcg
     1321 gtcagaatgg tcaggaaatc gcgcctggac tctcctggcg cggcatgtgg tgctgttggt
     1381 tcagccatct cgtctccccc ggagcaaaac cccttggata cagccatgaa ggcaaaggcg
     1441 gaaaatttca agagtggata gatcagcacg ttttgcttaa aggggcgcat gagcttttcg
     1501 cccccgcatc acgcgttgaa aaccgaggtt gccgactggt tcgcacggct gcgcgaccag
     1561 atctgcgccg aattcgaagc catagaggat atggccggac cgaatccggg gcggttcgag
     1621 cgcgcggact gggaccggcc gggcggtggc ggcgggacac gcgccatcat ccgggggcag
     1681 gtgttcgaga aggcgggggt gaatatctcg gttgtggagg gcgaattctc aagcgaattc
     1741 gctgcgcgca tgccgggcac cgaggcgggc gcgaaattct gggcggcggg aatttcgctc
     1801 gtcgcgcatc cgcgcagccc gaagctgccg gcggtgcata tgaatacgcg catgctggta
     1861 acggcgaagg gctggttcgg cggcggcggc gatttgaccc cgctgcaacc cggcacggcg
     1921 gaagcggtgg aagacgcggc gcatttccat gcagcgtata aggcggcgtg cgaccggcac
     1981 gacccggcct attacgagaa attcaaggcc tggtgcgacg agtatttcta tctgccgcac
     2041 cggaatgagc cgcgcggggc gggcgggatt ttttttgatt atctcgattc aggcgatgcg
     2101 gcggcggatt tcgcctttac acgcgatgtg ggggaggcgt tctgcgcggc ctatgtgccg
     2161 attgccaagc gccgttttgc cgagccctat acccctgagg agcgcgaggc gcagctgata
     2221 cggcgcgggc gctatgtgga attcaacctg ctttatgacc gcgggacgat gttcgggctc
     2281 aagacgggcg gcaacatcga ggcgatcctg atgtccatgc cgccagaggt gaa
//
LOCUS       DASQCV010000629         6748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2456548, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000629 DASQCV010000000
VERSION     DASQCV010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6748
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2456548"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VEQ16_09750"
     CDS             <1..406
                     /locus_tag="VEQ16_09750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HYP64162.1"
                     /translation="FCTAKLPESPFLYPEDDLTDLPDRLLAAEIVREQIFLQTRDEVP
                     YGATVETESFKEQGAKIRIDAVIYVSRPGHKGILIGAKGARIKEIGARARAELSKLLE
                     TNVDLFLRVAERPGWDEEAARIRATGLTDPKS"
     gene            407..1825
                     /locus_tag="VEQ16_09755"
     CDS             407..1825
                     /locus_tag="VEQ16_09755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64163.1"
                     /translation="MQHGADGRSWLYRLGPSAVAAFWFLGFALLWWFDRPLYAAVMGQ
                     YIWNNAETWAASANFPFFDLGAVLQAAACWRQGVDVFAPNACMQGGIFNYTPLLLRIG
                     LLGIGPGAQLTGGVLLGLLFIAASAFLPPVRKCGEFLLRSAVLCSCAVVHGLVAANID
                     LAVFVLVVAGVALQRAGFAGRVLGYALFLFGGALKFYPAVLLALTLRENRLRLACIGA
                     VLTLGAGIVAFHYAQALSGIFVNLPLGLPFRGSFGAVNLPFGLALLAFMDQPSVLPGG
                     EAFHAALHHPGLPLYVVLGSRVLVLAALATGLRLASLYAAPLARLDERRRLFLVAGAV
                     LLAFCFYIAPNYEYRGVYLLLTLPGLHGMARAGSKPARLILALILPLLCERILWTVFG
                     AIGALLPGHALASWLGILLWLLREAGWWFIMVSFTAIGFAFMRAAFAHLQGGGEMLPI
                     HHGIRGDSRAGAMAGEAREVKS"
     gene            1822..3459
                     /locus_tag="VEQ16_09760"
     CDS             1822..3459
                     /locus_tag="VEQ16_09760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64164.1"
                     /translation="MNRVFPQALAALALYALLAAALIWRGASLTHQLSGIGSDPFDSP
                     LFLAWWPYALTHHLDPFFTKLIWYPSGVSMLWVTSVPLLSLLGWPVTAAFGAVVTYNL
                     LIITSPMFSAWSAYFLCRHVTRNFTASLFGGFLFGFSTYETSQSIGALNLTIIFCLPL
                     LLLVVLKRLDDELSRPAAVALAAMLLLAQFLICIEIFAMIFVFGGIAWALALAYLPEQ
                     RPVLRRLFVDGLWTAPFVALPLVPIFISMARHYALINHPAAWPYIFVTDLLSIAIPSE
                     LNLFGKLFHGVAGGGASDTQESGGYLGLPLLAMIALYLWQEGRTRRGRYCGIMVLVCL
                     LCSLGPFLWVGGHFTGIALPWLAMVHLPLLGSALPGRFTLMTSLVVSIIAASWLALAG
                     RRKLRLLLALLACIALLPQPHPWRPVPVTKFFAPGRVQEVLGPNPRLIILPFAINGPS
                     SLWQLQNELGFTQVGGYLGFPPKPAQAYKATIELFGGRMGKSLNAADFAAFARGNGAQ
                     YVVAGPGEEPAELAVIETLGWPERRVDDVTIFTVPPA"
     gene            3483..5093
                     /locus_tag="VEQ16_09765"
     CDS             3483..5093
                     /locus_tag="VEQ16_09765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64165.1"
                     /translation="MALLLYVVTAWVLLAHGASPMDHIFGLTSDPYSTIWCLRYLPWA
                     IAHHQLMPVTHLVWQPYGINLAWVTSVPLFGLFTAPITLTFGPVLSFNLLTLAAPALA
                     GWATYFLCLEIGELPWAAMLGGFIFAFSSYEAAQSFDHLNLDFTALLPLILLVALRRL
                     RGRAGRGHTVLWLGLLLGTEFLISEEILATACLFGAICFLLAYIFETPRRPAMRALAL
                     DIVFAAPVALLLTAPILLAMAGDIYDVEHPALWVESFSVDALNLLLPTESSWLGGRAF
                     LPWSEAFSGALDEQMGYLGLPVLLLLGLVLANAKLRRTLWLPLSMFGLALLASLGPVL
                     HVAGHNTGIILPWALIARLPLLGAALPARCMVFAFLALSIIVSFWLSVQLGAGRVLLA
                     LCVCLSLLPAPHPAPTAPASAFFRPGRVQQILGSHPTLLILPFSINGPSSFWQAENEF
                     GFTQVGGYLGFPPHWAQNDPAVTQLWSGKLTPGFTQDLTSMAERWGADYVVAGPGTPA
                     DQRATLATLGWRAQNVDDVTIYAVPKVP"
     gene            5090..6034
                     /locus_tag="VEQ16_09770"
     CDS             5090..6034
                     /locus_tag="VEQ16_09770"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYP64166.1"
                     /translation="MRQLLTLAVPFYNEADAIQLFAGKILPVLDTIPEARWEIVCVDD
                     GSTDSTLLKLVALAQADKRFRVLEFSRNFGKEAALTAAIDAARGDAVIPIDADLQDPP
                     ELIAQMVQAWREGAEVVVARRIDRSSDGVMKRKTAAWFYKLHNRLSKTKIPENVGDFR
                     LMDRTVVEALKQLPERQRFMKGLFAWVGFRTVTVDYVRAPRTAGMSKFSGLTLWNFAL
                     EGFTSFSTAPLKIWTYLGAACALGTFLYGLYIVLVTMLFGNKVPGYASLFVAITFFGS
                     VQLISIGVLGEYIGRIYVETKHRPPYLIRKTYGGDDGT"
     gene            6024..>6748
                     /locus_tag="VEQ16_09775"
     CDS             6024..>6748
                     /locus_tag="VEQ16_09775"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYP64167.1"
                     /translation="MEPSAYLDMAAVEERHWWFEGRRRVLAGCIEGLELGAGARILEL
                     GSGTGGNLPLLARFGHVTAVEMNPMAREISSARHADADVREGKLPDDLPLEQQKFDLV
                     CMFDVLEHIDDDAAALRAARAHMAPGGTLLITVPAYKALFGPHDEELHHKRRYERDEL
                     RMKLHAAGLRVDKLTFINTTLLPLAWTLRWFDKALNRTQASGTSMPPALLNRLFTMMF
                     GAEAQILPHVNLPFGLSLLALAGA"
BASE COUNT         1009 a         1946 c         2164 g         1629 t
ORIGIN      
        1 tttctgcacg gcgaaattgc cggagagccc gtttttgtac cccgaggacg acctcaccga
       61 tttgccggac cggttgctgg cggcggagat cgtgcgcgag cagattttcc tgcagacgcg
      121 cgacgaggtg ccctatggcg ccaccgtgga gacggaaagt ttcaaggagc agggcgcgaa
      181 gatacgcatc gacgcggtca tctatgtgtc gcgacccggt cataagggca tcctcatcgg
      241 cgccaagggg gcgcgcatca aggagatcgg cgcccgcgcc cgggctgagc tgagcaagct
      301 gctggagacg aatgtggatc tcttcctccg cgtggccgag cggccgggct gggatgagga
      361 agctgcccgg atccgcgcca ccgggctgac ggacccgaag agttgaatgc aacacggggc
      421 tgacgggaga tcctggctct atcgtctcgg ccccagcgcc gttgcggctt tctggtttct
      481 gggttttgcc ttgctgtggt ggttcgaccg cccgctttat gcggcggtga tggggcagta
      541 tatctggaac aatgcggaga cctgggcggc ctctgccaat tttccgtttt tcgaccttgg
      601 cgccgtgctt caggctgccg cgtgctggcg ccaaggggtg gatgtgttcg cgcccaacgc
      661 ctgcatgcag gggggcattt tcaattatac gccgctgctg ctgcgcatcg gcctgctggg
      721 catagggccg ggggcgcagt tgacgggcgg cgtgttgctc gggctgttgt tcatcgccgc
      781 cagcgcgttt ctgccgccag tgcgcaagtg cggagaattc ttgctgcgca gcgccgtgct
      841 gtgctcctgc gccgtggtgc atgggctcgt cgcggcgaat atcgatttgg cggtatttgt
      901 gctggtcgtg gccggggtgg cgctgcagcg tgcgggtttt gcagggcggg tgctgggtta
      961 tgcgctgttt ctgttcgggg gcgcgttgaa attctatccg gcggtgctgc tggcgctcac
     1021 cctgcgtgaa aacaggctgc gcctggcttg cataggtgcg gtgctgacgc tcggagcggg
     1081 gattgtggcg tttcattatg cccaggccct gagcggtatt ttcgtcaatc tgccattggg
     1141 cctgccgttc cgcggctcct tcggcgcggt gaacctgccc ttcggcctgg cactgctcgc
     1201 tttcatggac cagccgagcg tgctgcccgg cggtgaggca tttcacgccg cgctgcatca
     1261 ccccggattg ccgctttatg tggtgctggg gtcgagggtt ttggtgctgg cggcgctcgc
     1321 caccgggctg aggctggcct cgctctatgc agccccattg gcgcggctcg atgaaagaag
     1381 gcgcctgttt cttgtggccg gcgccgtgct gctggctttc tgtttttaca ttgcgccgaa
     1441 ttacgaatat cgcggcgttt atctgctcct caccttgccc ggcttgcatg gcatggcgcg
     1501 tgctgggagc aaaccagccc gcctcatcct ggcgctgatc ctcccgttgc tgtgcgagcg
     1561 tatactatgg acggtctttg gcgctatcgg cgcgctgttg ccgggccatg cgctggcaag
     1621 ctggcttggc attctattat ggctgctgcg ggaagccggc tggtggttca tcatggtcag
     1681 cttcacggcg atcggctttg ccttcatgcg cgccgccttc gcgcatttgc agggcggtgg
     1741 ggaaatgtta ccaattcatc atggcatccg cggcgattcg cgcgctggcg ccatggcggg
     1801 agaggcccgg gaggtgaagt catgaacagg gtttttccgc aggcgctggc ggcgctggcg
     1861 ctgtatgccc tgctggcggc agcgctcatc tggcgaggcg cctcgctgac gcatcagctg
     1921 tccggcatcg gttccgaccc gttcgattct cccttgttcc tggcctggtg gccttatgcg
     1981 ctgacgcatc atcttgaccc gttcttcacg aagctgatct ggtatccgag tggcgtgtcg
     2041 atgctttggg taacctcagt gccattgctc tcgctgctgg gctggcccgt cacggcggcg
     2101 tttggcgcgg tggtcaccta taatttgctc atcattacct cgccgatgtt cagcgcctgg
     2161 tcggcctatt ttctctgccg acacgttaca cggaatttca ccgcatctct gtttggcggg
     2221 ttcctgttcg ggttttccac ttatgagaca tcgcagagca tcggtgcgct caacctcacc
     2281 atcatcttct gcctgcctct gttgctgctg gtcgtgctca agaggctcga tgacgaattg
     2341 tcgcgtccgg ccgccgtggc gctcgcggct atgttgctgc tggcgcagtt tttgatctgc
     2401 atcgagatct tcgccatgat cttcgtgttc ggtggcatcg cctgggcatt ggcgctggct
     2461 tacctgccgg aacaacgccc ggtgctgcgg cgattattcg tggacgggct ctggaccgcg
     2521 cccttcgtgg cgctgccgct ggtgccgatc ttcatctcca tggcgcgaca ttatgcgctc
     2581 atcaatcatc ccgcggcctg gccctatata tttgtcacag acctgctgag cattgcgatc
     2641 ccctccgagc tcaatctgtt tggcaagctg ttccacggcg tagccggggg gggggccagc
     2701 gatacgcagg agagcggcgg ctatctcggc ttgcctttgc tggctatgat tgccctctat
     2761 ctctggcagg agggccgcac ccggcgggga cgctattgcg gcatcatggt gcttgtttgc
     2821 ctgctgtgca gtctggggcc gtttttgtgg gtgggcgggc attttaccgg aatcgccctg
     2881 ccttggctcg ccatggtgca tctgccgcta ctcggcagcg cgctgccggg gcgtttcacg
     2941 ctcatgacct cgctcgtggt gtccatcatc gcggcaagct ggctggcgct ggcggggcga
     3001 cgcaagctaa gactgctcct ggcgctgctt gcctgcatcg ccttgttgcc gcagccgcat
     3061 ccgtggcgcc ccgtgccggt gacgaaattt tttgcgcccg gccgcgtgca ggaggtgctg
     3121 ggaccgaatc cgcgcctgat cattctgccg tttgctatca atggcccgtc atccttgtgg
     3181 caattgcaga atgaattggg cttcacccag gtgggcggct atctcgggtt tccgcccaag
     3241 ccggcgcagg cctacaaggc gacgattgaa ttatttggcg gtcggatggg aaagagtttg
     3301 aacgctgccg actttgccgc gtttgcgcgt ggcaatgggg cgcaatatgt ggtggcgggg
     3361 ccaggggaag agccagcgga actggccgtc atcgagacat tgggctggcc tgagcggcgg
     3421 gtcgatgatg tgacgatctt tacggtgccg cccgcatgat ggcgcgcaag tgggaagcgg
     3481 cggtggcact gctgctttat gtcgtgacgg cctgggtgtt gttggcacat ggcgcttcgc
     3541 ccatggacca tatattcggt cttacgtcgg acccatattc cacaatctgg tgtctgcgct
     3601 atctgccttg ggccatcgcc catcatcagc tcatgccagt aacgcatctt gtatggcagc
     3661 catacggcat aaacctcgcc tgggtgacca gcgtgccttt attcggcctg tttacggcgc
     3721 ccattaccct gacctttggg cccgtgctca gcttcaacct tctgacattg gcagcacctg
     3781 cgctagcggg ttgggcaacg tattttctat gtctggaaat aggcgagctg ccatgggcag
     3841 ccatgttggg tggcttcatc tttgcgtttt catcttatga ggcagcgcag agctttgatc
     3901 atctgaatct ggatttcacg gctttgctcc cccttatttt gctcgtggcg ctgcgccgtc
     3961 tacgtggccg ggcagggcga gggcatacag tgttatggct tggcctgctg ctaggaacag
     4021 aattccttat ctctgaagag attttggcca cggcatgctt gtttggcgcg atatgttttc
     4081 tcttggccta catatttgaa acaccccgcc gtccggcgat gcgtgctttg gcgctcgata
     4141 ttgtctttgc cgcgccggtg gcgttgctcc tgaccgcacc gatcctcttg gcgatggccg
     4201 gtgatatata tgacgtcgag catcctgcct tatgggttga gtcattttcc gttgatgcgc
     4261 tcaatctttt gcttccaacc gaaagcagct ggcttggcgg gcgggcgttt ttgccatggt
     4321 ccgaagcatt cagcggtgca ttggatgagc agatgggtta tcttgggctg cctgtcttgc
     4381 tgttacttgg cttggttttg gcgaacgcga agctgcgccg cacgctctgg ctgcctctga
     4441 gcatgtttgg tctggccctc ctcgcatcgc tcggcccggt actgcatgtg gctgggcaca
     4501 acacgggtat tattctgcct tgggcactaa ttgcgcgcct gcccttgctg ggggctgcgc
     4561 tccccgcgcg ctgcatggtt tttgcatttc tggcactgtc catcatcgtc agcttttggc
     4621 tgtcggtgca gctgggggcg gggcgtgtgc tgctcgcact ctgcgtctgt ctctcgctac
     4681 tgccagcgcc ccatccggca ccgactgccc ccgcttccgc gttctttcga cctgggcgcg
     4741 tgcagcaaat tcttgggtcc catcctactc tgcttattct ccctttcagc attaatggcc
     4801 cgtcctcctt ctggcaggca gagaacgagt ttggctttac ccaggtcgga ggctatctcg
     4861 gttttccgcc gcactgggcg cagaatgatc cggcggtgac gcagttgtgg tcgggaaaac
     4921 ttacacctgg cttcacgcaa gatctgacca gcatggctga acggtggggg gcagattacg
     4981 tggtcgcggg ccccggtacg ccggcagacc aacgcgcgac tcttgcaacc ttggggtgga
     5041 gagcgcaaaa tgttgatgac gtaaccattt atgcggtccc caaggtgcca tgagacaact
     5101 cctgactctc gccgtgccat tctataacga agcggacgcg atacagcttt ttgccggcaa
     5161 aatcctgcca gtgcttgaca ccattccgga ggcgagatgg gaaatcgttt gcgtcgatga
     5221 cggcagcacg gacagcacgc tgctcaagct tgtcgccctg gcgcaagcgg ataagcgctt
     5281 ccgcgtgctt gagttctcac gcaatttcgg caaggaggcg gcgctgaccg cggccatcga
     5341 cgcggcgcgc ggtgatgcgg tgattcccat cgatgctgat ttgcaggacc cgccggagtt
     5401 gattgcgcag atggtgcagg cctggcgtga gggggccgag gtggtggtgg cgcggcgcat
     5461 cgaccgcagt tccgacggag tgatgaagcg caagaccgcc gcctggttct acaagctgca
     5521 taaccgcctc tccaagacca agatcccgga gaatgtcggg gatttccgtc ttatggatcg
     5581 aacggttgtg gaggcgttga agcagttgcc ggagcgccag cgtttcatga aaggcctgtt
     5641 cgcctgggtc ggcttccgca ccgtcacggt tgattatgtg cgggcgccgc gtaccgccgg
     5701 gatgagcaaa ttctcgggcc tcaccttgtg gaatttcgcg ctagaggggt tcacaagctt
     5761 ctcgacggcg ccactgaaaa tatggactta tctcggtgcc gcctgcgcgc tcggcacctt
     5821 cctttatggc ctctatatcg tcttggttac aatgctgttc ggcaacaagg tgccgggcta
     5881 tgcgtctttg tttgtcgcta tcacgttttt tggttcggtg cagcttatct ccatcggggt
     5941 gctcggcgaa tatatcgggc gcatctatgt tgagaccaag catcgtccgc cctatctaat
     6001 tcgcaagact tacgggggtg acgatggaac ctagtgccta tctcgacatg gccgcggtgg
     6061 aagagcggca ttggtggttc gaaggccgcc gccgcgtgct ggctggttgc atcgaggggc
     6121 tggagctggg ggccggggcc aggattctgg agcttgggtc cggcacaggc ggtaatctcc
     6181 cgctgctcgc ccgtttcggt cacgtgacgg cggtggagat gaacccgatg gcacgggaga
     6241 tttccagcgc ccgccatgct gatgccgatg tgcgcgaagg caagctgccg gatgatctgc
     6301 cgctggaaca gcagaaattc gatctggtct gcatgttcga cgtgctggaa catatcgatg
     6361 acgacgcggc tgctttgcgg gcggcgcgcg cgcatatggc gccgggtggc acgctgctca
     6421 tcaccgtgcc agcctacaag gctctattcg gcccgcatga cgaggagctg caccataaac
     6481 gccgctatga gcgcgatgag ttgcggatga aattgcatgc cgccgggctg cgtgtggaca
     6541 agctgacctt tatcaacacc acgttgctgc cgctcgcctg gacgctgcgc tggttcgata
     6601 aggccctgaa tcgcacccag gcttctggca cgtcaatgcc gcccgcgctg ctcaaccgcc
     6661 tgttcacgat gatgttcggt gcagaagcgc agattttgcc gcatgtgaac ctgcctttcg
     6721 gcctgtctct gctggccttg gccggagc
//
LOCUS       DASQCV010000630         2762 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1296249, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000630 DASQCV010000000
VERSION     DASQCV010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2762
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1296249"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            45..1280
                     /locus_tag="VEQ16_09780"
     CDS             45..1280
                     /locus_tag="VEQ16_09780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010510972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP64168.1"
                     /translation="MSSSATATATPGAKALFSQPSFAIFFAVRGCSSFAYQIAAVAIG
                     WQVYALTRSAFDLGLIGLMQFLPVAGLTFFAGHAADRYARHRVVQICQAVEAAVSVFL
                     AIGTFRHWLTVPEIFMAVTVMGAARAFESPAQSALLPGLVPAGMLQKATAITSSVFQL
                     ATITGPALGGLVYAISPGVPYVGMAAAWGLSAILLGFIRVEQPVAPKAPPSLRDLFAG
                     VAFVRENPAILGTISLDLFAVLLGGATALLPIYARDILHTGPWGLGVLRAAPAVGALL
                     TSAVLARFPLSRHTGRRMFEAVILFGFATIVFGLSHFIILSVLALVIMGAADMVSVVI
                     RLSLVQLRTPDEMRGRVGAVNFLFINASNQLGEFESGFTAALLGAVPAVILGGAGTVA
                     VALLWMRLFPTLRDVDKLE"
     gene            1338..1649
                     /locus_tag="VEQ16_09785"
     CDS             1338..1649
                     /locus_tag="VEQ16_09785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64169.1"
                     /translation="MMQGIEQFAIGVVTICVIIMRGVGVIDDLFSSMMQSFGVYDPHW
                     QLYILLGVLAFYVVLSLRAVGGMLGWAMLFFAVLLLLHRTLPSLSTPSMPVVSQLQNA
                     L"
     gene            1786..>2762
                     /locus_tag="VEQ16_09790"
     CDS             1786..>2762
                     /locus_tag="VEQ16_09790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HYP64170.1"
                     /translation="MTAEVTPELFGIIEEKGIAEVALAERRGSPKAVFGLWMAANVEF
                     ATLTTGALATGWLGLSFSSALVAILIANVLGGLVLAFFSTFGVEYGLPQMIQGASWFG
                     RLGNKLPSLFNFFGGFSWFAVNTIAGAYALQYFFGGSLIPFVILLSVVQVAIAFVGHD
                     LIQTAEKYLVYLLVLGFLALTVVAVKHLGLSVPANVKSQTAVGGFSGAFILTLSIMVG
                     YVVGWIPYSSDYTRYLRTNANKEGVKKTVFTYAFWGSLISTVWIEALGALIGASISFS
                     KPSDLFTDWMPAWFKVPFLIAVILGTISANILNIYSATLSALALGVKIK"
BASE COUNT          387 a          877 c          833 g          665 t
ORIGIN      
        1 gaatggctat ggtgcagggc cacaatgccg attaagccgg taggatgagt tctagtgcaa
       61 ccgcgacggc cacgcctggc gccaaggcgc tgttttccca acccagcttc gcgatcttct
      121 ttgctgtccg cggctgttcc agcttcgcct atcagatcgc ggcggttgcc attggctggc
      181 aggtctatgc gctcacccgc tccgcgttcg atctcggcct gatcgggctc atgcagttcc
      241 tccctgttgc cggcctcacc ttcttcgccg gccacgccgc cgaccgctat gcgcgccacc
      301 gcgtggtgca gatctgccag gccgtcgagg ccgcggtctc agtgtttctc gccatcggca
      361 ccttcaggca ttggctcacc gtgccggaaa ttttcatggc cgtgacggtg atgggagctg
      421 cccgcgcctt cgagagcccg gcgcagagcg cgctgctgcc ggggttggtg ccggcgggca
      481 tgctgcagaa ggcgacagcc atcacctcct ccgtgttcca gctcgccacc attaccggtc
      541 cggccctcgg cggcctggtt tatgccattt cgcccggcgt gccttatgtt ggcatggccg
      601 ccgcgtgggg cttgtccgcc atcctgctcg gcttcatccg ggtggagcag cccgtggcgc
      661 cgaaagcccc gcccagcctg cgcgaccttt tcgccggcgt tgccttcgtg cgcgaaaatc
      721 cagccattct cggcaccatc tcgctcgatt tattcgccgt gctgctgggc ggggctacag
      781 cgctgctgcc tatatatgcc agggacatcc tgcataccgg tccgtggggg cttggcgtgc
      841 tgcgcgccgc acctgcggtg ggggcgctgc ttacctcggc cgtgctggcg cgtttcccgc
      901 tctcccgcca taccgggcgg cgcatgttcg aggctgtcat attattcggc ttcgccacca
      961 tcgtcttcgg cctgtcccat ttcatcatcc tctcggtcct ggctctcgtc atcatgggtg
     1021 ctgcggacat ggtcagcgtc gtcatccgcc tctctttggt gcagctgcgc acgccggatg
     1081 agatgcgcgg ccgggtgggg gcggtgaatt tccttttcat caacgcctcc aaccagctcg
     1141 gcgagtttga gagcggcttc accgcggcgc tgttgggtgc cgtgccggcg gtgattctgg
     1201 gcggcgccgg taccgtggcg gtggcgctgc tgtggatgcg gcttttcccc accctgcgtg
     1261 atgttgacaa gttggaataa ggcttggcca gttccctgaa atcattatat tgaacacgta
     1321 caaatcaagg tgcggatgtg atgcagggaa tcgagcaatt cgccataggg gtggtgacga
     1381 tttgcgtgat cattatgcgc ggcgtcggtg tcatcgatga cctgttcagc tcgatgatgc
     1441 agtccttcgg cgtctacgac ccgcactggc agctttatat cttgctcgga gtcctggcct
     1501 tttacgtcgt gctgtcgctg cgcgcggtgg ggggcatgct gggctgggcc atgttgtttt
     1561 tcgccgtgct gctgctgctg caccgtacgt tgccctcgct ctcaacgccc tccatgccgg
     1621 tggtttcgca gctgcagaac gctctttaag ctttcgtgac attcgcttga cgttttcgtc
     1681 ataaatgggc agttttcgag cacttccgac ataatctcat ggctgctttg cgccattagc
     1741 ggaggtatca tcgtacaacc ggccccgcgc catacggagc gaagaatgac cgcagaagtg
     1801 acccctgaac tttttggcat tatcgaggaa aaaggcatcg cggaggtcgc cctcgcggag
     1861 cggcgcggca gtccgaaggc cgtgttcggc ctgtggatgg ccgccaatgt cgagtttgcc
     1921 accctcacca ccggcgcgct ggcgacgggt tggctcggcc tgtccttctc ttccgcgctc
     1981 gtcgccatcc tcatcgccaa tgtgctgggc gggctggtgc tggccttctt ctccaccttc
     2041 ggcgtggaat atggcctgcc gcagatgatc cagggggcga gctggttcgg ccggctgggc
     2101 aacaagctgc cgtctctgtt caatttcttc ggcgggtttt cctggttcgc ggtcaacacc
     2161 atcgccgggg cctatgcgct gcagtatttt ttcggcggca gcctcattcc tttcgtcatc
     2221 ctgctgtccg tggtgcaggt cgccatcgcc tttgtcgggc atgatctcat ccagacggct
     2281 gagaaatatc tcgtctatct gctggtgctg ggcttcctgg cgctcaccgt ggtggcggtg
     2341 aagcatctcg gcctgtccgt gccggccaat gtgaaatcgc agacggcggt gggcggcttc
     2401 tccggcgcct tcattctcac tttgtccatc atggtcggct atgtggtggg ctggattccc
     2461 tattcctccg actatacgcg ctacctccgc acgaacgcga ataaggaggg tgtgaagaag
     2521 accgtcttca cctatgcgtt ctggggctcg ctcatctcca ccgtgtggat cgaggcgctc
     2581 ggcgcgctca tcggcgcctc catctccttc tccaagccgt cggacttgtt caccgactgg
     2641 atgccggcct ggttcaaggt gccgttcctc atcgccgtca ttctcggcac gatcagcgcc
     2701 aacattctca acatctattc tgccaccctc tccgccctgg cgctgggggt gaaaatcaag
     2761 ca
//
LOCUS       DASQCV010000631         4172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1131744, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000631 DASQCV010000000
VERSION     DASQCV010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4172
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1131744"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            224..436
                     /locus_tag="VEQ16_09795"
     CDS             224..436
                     /locus_tag="VEQ16_09795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64171.1"
                     /translation="MTRRFNMIFRHMFGLAPAHPYPAGGAALGQRAPFQRVDNVARVT
                     EGPSLGGPLHPRMNGPFSGKIRYKTR"
     gene            502..>4172
                     /locus_tag="VEQ16_09800"
     CDS             502..>4172
                     /locus_tag="VEQ16_09800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 99-like
                     domain-containing protein"
                     /protein_id="HYP64172.1"
                     /translation="MNAQQLQTEIHVIRNSGLFLSAWYIGQRRELAGRGGDGVDHFCA
                     RGWREGARPNPYFDTGWYLQQNPEVASAGVNPLLHYIAFGEAEGRAPSPWFDPAWYRV
                     TYNVPAGELALKHFLERRNGGKVSPVPVFDPAFYLDSNPDVALSGADPFEHFCLFGMA
                     EGRNPAPGFDIKFYRTRYAAQLGGENPLLHHLANRERLPGLATSAEASRDVAAMVRQA
                     TRRAPHFEDFCPAPAHAARRAKLLAYYLPQFHRVAENDAWWGKGFTDWTNLLRASPRF
                     VGHQQPRVPRDLGFYDLENPEVLRRQVEMAKGAGLEGFVFYTYWFNRHRLLEKPLELF
                     LADKSLEFSFCAMWANENWTRRWDGMEHEVLIAQQYLESDDEALAAHFARMFADARYI
                     RIEGRPLLFIYRAALVPGARARIGKWRAMFRELHGEEPLLVMAQSLGEDYDPRPYGLD
                     GAVEFPPHKISQAAPHIEDGLTLLDPDFSATVHDYAAFAETSLALPAPDYPLIKTIVP
                     NWDNDPRREGKGLVLHGSTPALYQDWLEKILDYAGRNPFHGEKIICVNAWNEWAEGAY
                     LEPDLHSGAAYLNATSRAICVQARDDFSTGLLLVGHDAAAHGAQLLLLHIARYLQRHC
                     GMRLHILLLHGGTLLDEYVRVAEVSVMADRKLICSQLDKLHAAGVRRAIVNSAGAARI
                     VPWAQERGIEATLLVHELPRLLREYDLETQARQGAEAARHVVFSSGFLHDKFTAAAEF
                     ELPHSVLLAQGNYHATRFDAAARARVRQTLGLRTKDYLVLGAGFAHIRKGFDLFLQLA
                     RKFSSRGDVRFVWAGDVEFMVQTYFGPEMEEAARLGCFTHVPFTNDIADYFSAADVLA
                     LPSREDPLPTVVMEALGAGVPCVAFEGSGGIPELLRHENAGLVVPMADVDAFAQALTQ
                     LLDHKTLAASRPRLAAMAAQTFDFGTYMSRLLQLVEPELTQVSVAVLNYNYARYLPER
                     LAGIFAQTHPVAEILLLDDHSMDGSLAVAAQTAEAAGREMRIIANAKNEGVFAQWRRA
                     AETAKGEYLWLCEADDDAAPTLLAQLVSACRAAETPLLAFADSRAVDEDGREVMASYK
                     PYYFDAGATGLMQSGLWDGREFAAQYLAIRNLIPNVSAVLWRREALLRTMDAVPDLAG
                     WKLAGDWRLYLALLAGQVGQVAYVAEPLNIHRRHGSGVTQSLSPEAHADEIARMQVLA
                     AKALKLGKPARTAQAEDLAR"
BASE COUNT          712 a         1222 c         1428 g          810 t
ORIGIN      
        1 tcaccgcggc ctgggagacg agcagctcct gtgcggccag agtaaaattc tcatgccgcc
       61 cggccgcctc gaaactgcgc agcgccgtga ggggcagctg gccccgcttc attcgcataa
      121 cctcatatta tccaagcccg acaatatact cgtttgaaat cattgcccag gcttcttaag
      181 tctcatctgc agatagctgc accaacttcg tggagtgatc ggcatgacac gcagattcaa
      241 catgattttc cggcatatgt tcggcctggc gccggcgcat ccttacccgg cgggcggggc
      301 tgcgctgggg cagcgggcgc cgttccaacg ggtggataac gtggcgcggg tcacggaagg
      361 accgtccctc ggcgggccgc tgcatccgcg catgaatggc ccgttttccg gaaagatacg
      421 ctacaagacc cggtgaggca ccgcccggcc gcgtgacaaa cacgacgcct tgcgggcatg
      481 atgcgcggcg gaggcttatc cgtgaacgcg cagcaattgc agactgaaat ccatgtcatc
      541 cgcaatagcg ggctgtttct gtccgcctgg tatatcggcc agcggcgcga gctggcgggg
      601 cggggcggcg atggtgtaga ccatttctgc gccagaggct ggcgcgaggg ggcgcggccc
      661 aacccttatt tcgatacggg ctggtatctg cagcaaaacc cggaagtggc cagcgcgggg
      721 gtgaatccgc tgctgcatta cattgccttc ggcgaggcgg aggggcgcgc cccctcccct
      781 tggttcgacc cggcctggta ccgcgtcacc tacaatgtac cggcgggcga gctggcgctg
      841 aaacattttc tcgagcggcg caatggcggc aaggtgagcc ctgtgccggt gttcgatccg
      901 gctttctatc tggacagcaa cccggatgtg gcgctgtcgg gtgccgatcc gtttgagcat
      961 ttctgcctgt tcggcatggc ggaagggcgc aacccggcgc cggggtttga tataaaattc
     1021 taccggacgc gctatgcggc gcagctcggc ggagagaatc cgctgctgca tcatctcgcc
     1081 aatcgcgagc gcctgcccgg cctcgcgacc agcgccgagg catcgcgcga cgtggcggcg
     1141 atggtgcgcc aagccacgcg ccgcgcgccg catttcgagg atttttgccc cgcccctgcc
     1201 catgccgcgc ggcgcgcgaa attgctggct tattatctgc cgcaattcca ccgcgttgcg
     1261 gagaatgatg cctggtgggg caagggcttt acggactgga cgaatctgct gcgcgccagc
     1321 ccgcgtttcg tcgggcacca gcagccgcgc gtgccgcgcg atctcgggtt ttacgatttg
     1381 gaaaatccgg aggtgctgcg gcggcaggtg gaaatggcga aaggcgcggg gctggagggg
     1441 tttgttttct acacctactg gttcaaccgc catcgcctat tggaaaagcc gctggaattg
     1501 tttctggcgg ataaaagcct ggaattttcc ttctgcgcca tgtgggccaa tgagaattgg
     1561 acgcgccgct gggatggcat ggagcatgag gtgctcatcg cccagcaata tctggaaagc
     1621 gatgacgagg ccttggccgc gcatttcgcc aggatgttcg cggatgcgcg ctatatccgc
     1681 atcgagggac ggccgttgct gttcatctac cgcgccgcgc tggtgccggg agcgcgggcg
     1741 cgcatcggca aatggcgcgc gatgttccgc gaattgcatg gcgaggagcc gctgctggtg
     1801 atggcgcaga gcctgggcga ggattatgat ccgcggcctt atgggctgga cggggcggtg
     1861 gaatttccgc cgcacaagat cagccaggcg gcgccgcata ttgaggatgg gctgaccctg
     1921 ctcgacccgg atttttccgc gacggtgcat gattatgcgg catttgcgga aacctcgctc
     1981 gctttgcccg cgccggatta tccgctgata aaaaccatcg tgccgaactg ggacaatgac
     2041 ccgcggcgcg agggcaaagg gctggtgctg catggctcga cgcccgctct ctaccaggac
     2101 tggctggaaa aaatcttgga ttatgcggga agaaatccgt ttcacggcga aaaaatcatc
     2161 tgcgtgaatg cgtggaatga atgggccgag ggcgcgtatc tggagcctga cctgcattcg
     2221 ggtgctgcct atctcaacgc cacgtcccgc gccatctgcg tgcaggcgcg cgacgatttt
     2281 tccaccgggc tgctgctggt gggccatgac gcggcggcgc acggggcgca acttctgctt
     2341 ctgcatatcg cccggtatct gcaacggcat tgcggcatga ggctgcatat tctgctgctg
     2401 catggcggga cgctgctgga cgagtatgtg cgcgtggccg aggtgagcgt gatggcggat
     2461 cgcaaattga tctgtagcca gcttgataaa ctccacgccg ccggcgtgcg gcgcgccatc
     2521 gtcaacagcg cgggggcggc acgcattgtg ccctgggcgc aggagcgcgg catcgaggcg
     2581 acgttgctgg tgcatgagct gccgcgcttg ctgcgcgaat atgatctgga gacgcaggcc
     2641 cgccaggggg cggaggcggc gcggcatgtg gtgttttcct caggcttcct gcatgacaaa
     2701 ttcaccgccg cggcagagtt tgaactgccc cattccgtcc tgctggcgca gggcaattat
     2761 cacgccacca ggttcgatgc ggcggcgcgc gcgcgcgtgc gccagacgct cgggctgagg
     2821 acgaaagatt atctcgtgct tggcgcgggg tttgcgcata tccgcaaggg gtttgatctg
     2881 ttcctgcaat tggcgcgaaa attttcgtcc cgtggcgatg tgcgcttcgt ctgggccggc
     2941 gatgtggaat tcatggtgca gacctatttc ggtccggaga tggaggaagc cgcgcggctg
     3001 ggctgcttca cccatgtgcc gttcacgaat gacattgccg attatttctc ggccgccgat
     3061 gtactggcgc tgccctcgcg cgaggacccg ctgccaaccg tggtgatgga ggcgctgggc
     3121 gccggcgtgc cgtgcgtggc ctttgaagga agcggcggca ttcctgaatt attgcggcac
     3181 gaaaatgccg ggcttgtggt gccgatggcg gatgtggatg cattcgcgca ggcgctgact
     3241 cagttgctgg accacaagac actggccgca tcgcgcccgc gcctggcggc gatggcggcg
     3301 cagacattcg atttcggcac ctatatgagc cggcttttgc agctggtgga gccggaactc
     3361 acgcaggtaa gcgtggcggt gctgaattat aattatgcgc gctatctgcc ggagcggctt
     3421 gccggcattt ttgcgcagac ccatccggtg gcggaaattc tgctccttga tgatcattcc
     3481 atggatggct cgctcgccgt ggcggcgcaa acggccgaag cggcggggcg ggagatgcgc
     3541 atcatcgcca atgcgaagaa tgagggcgtg ttcgcgcaat ggcgccgcgc cgccgagacg
     3601 gcaaagggtg agtatttgtg gctgtgcgag gcggatgatg acgccgcccc caccctgctc
     3661 gcccaactcg tctcggcctg ccgcgcggcc gagacgccgc tcctcgcctt tgccgatagc
     3721 cgcgctgttg atgaggacgg gcgagaggtg atggcgagct acaagcctta ttatttcgac
     3781 gcgggggcga cagggctgat gcagtccggc ctgtgggacg ggcgtgagtt tgccgcgcaa
     3841 tatctcgcca tccgcaacct catccccaat gtgagcgcgg tgctgtggcg gcgcgaggcg
     3901 ctgctgcgga cgatggatgc agtgccggac ctcgccggct ggaaactggc cggggattgg
     3961 cggctctatc tggcgctgct cgccgggcag gtgggccagg tcgcctatgt ggccgagccg
     4021 ctgaacatcc ataggcgcca tggcagtggc gtgacacaga gcctctcccc cgaggcgcat
     4081 gcggatgaga ttgcccgcat gcaggtgctc gcggccaagg cgctgaagct gggcaagccg
     4141 gcacggacgg cacaggcgga ggatctggca cg
//
LOCUS       DASQCV010000632         3379 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1462963, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000632 DASQCV010000000
VERSION     DASQCV010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3379)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3379)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1462963"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(366..1799)
                     /locus_tag="VEQ16_09805"
     CDS             complement(366..1799)
                     /locus_tag="VEQ16_09805"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008945523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HYP64173.1"
                     /translation="MYQDVLLHVGGKWRAATGGRTLDIINPATEEVIGKLAHASKEDL
                     DEALDHAAKGLAVWRKMSAYERSKLLRKTAELLRERGENIARLLTMEQGKPLAESRIE
                     IAGSADVIDWFAEEGRRAYGRVIPARAAGVYQLSLREPVGVVAGFTPWNFPMSQAVRK
                     ISAALAAGCSFILKGPEETPAACAELVRAYVDAGIPTGVVQLVFGVPAEISEYLIPHP
                     VVRKVSFTGSTAVGKHLASLAGLHMKRVTMELGGHAPALVFNDADLDAAVNVLAANKF
                     RNAGQVCIAPTRFLVQDGVYEPFLQKFVAKAQAIKLGDGLADGTTMGPLANDRRVTAM
                     EAFVADAVGKGAKLRTGGQRAGNKGYFFQPTVLTDIPSNARVLHEEPFGPLALVLPFS
                     SFDDAIAEANRLEYGLAAYAFTSSNTTATAVGAAIESGMVGINHHGLALTETPFGGVK
                     DSGYGSEGGAEGLEPYLVTKFVSQASL"
     gene            complement(1813..3156)
                     /locus_tag="VEQ16_09810"
     CDS             complement(1813..3156)
                     /locus_tag="VEQ16_09810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012566660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HYP64174.1"
                     /translation="MLDKNPAAPGVNVPNDLAAHWMPFTANRAFKKAPRLLAGAKDMH
                     YITVDGRKIIDAAAGMWCCNAGHGRAQISSAIAKQAEALDYAPPFQFGIPQAFELASR
                     IAELAPDGLDHVFFCNSGSEAADTALKIALAYHQLNGQGGRTRLIGRVRGYHGVGFGG
                     TAVGGIVNNRKIFGSLLAGVDHLPATYDREKQAFSKGEPDYGAHFADELENLVNLHGA
                     NTIAAVMVEPMAGSTGVIPAPKGYLKRLREITQKHGILLIFDEVITGFGRTGQAFAAE
                     TFGVVPDIMTMAKALTNGVIPMAAVAVREDVQQTILDAAPADSVEFYHGYTYSAHPVA
                     CAAALATLNIYREENIFAQVRDLTPAFLEQIGAFKGMDGVVDTRGFGLLGAVEIAPVG
                     KPGERGFKILRRAFEEGLVLRAAGDSIVLAPPFVATADEISKMIDIIRKLVKETA"
BASE COUNT          643 a         1027 c         1093 g          616 t
ORIGIN      
        1 agatcggtaa aacgcgccgt ggccagaaag ttggaataaa ggctccagag cggaaacgcg
       61 gtgctgagat tgtccatgcg cgctattttt gtggcggcgc agcattctgg tcaagtattt
      121 ttgttgactt tcaagaatgc gccttttgaa aaaagaaagg cactgcttcg cgcgctcgaa
      181 ccggtggcgc gcgctacgca gcccaaaaac ttttataatt tgggccagag gttgtgactc
      241 catgggacgc ctctccatgg cgtcacaacc tctggcccaa gtaatggggg gtctggggcc
      301 tcaggcccca gcgggtcgtc acgccgaagg cgtgcattcg cacgacggca gagccctggc
      361 ctttcttaaa gactagcctg cgaaacgaat ttcgtaacca gatacggctc cagcccttcg
      421 gcaccacctt cggagccgta gccgctatcc ttgacgcccc cgaaaggcgt ctcagtgagg
      481 gcgagaccgt gatggttgat gccgaccatg ccagattcga tggcggcgcc tacagctgtc
      541 gccgtcgtat tactgctggt gaaagcgtag gcggcgaggc cgtattccag acggttggct
      601 tcagcaatgg cgtcgtcgaa actgctgaag ggcagcacca gagcaagcgg accgaacggc
      661 tcctcatgca gcacgcgggc attgctggga atgtccgtga gcacggtggg ctggaagaaa
      721 tagcctttat tgccggcgcg ctggccgccg gtacgcagct tggcgccctt gcccacggcg
      781 tcagccacga aggcttccat ggcggtaacg cggcggtcat tggcaagcgg acccatggtg
      841 gtaccatcgg ccaggccgtc gccgagcttg atggcctgcg ccttcgcgac gaatttctgc
      901 aggaagggct cgtacacgcc gtcctgcacc agaaagcgtg tgggcgcgat gcaaacctgg
      961 ccggcattgc gaaacttatt ggcggccagc acattcacgg cagcgtcgag atcggcatcg
     1021 ttgaagacaa gcgcgggagc gtggccgccc agctccatcg tcacgcgctt catgtgcagc
     1081 ccggcaagtg aggcgagatg cttcccaaca gctgtggagc cggtgaagga gaccttgcgc
     1141 accaccggat gcggaatgag atattccgag atttccgctg gcacgccgaa gacgagctga
     1201 accacgcccg tagggatgcc ggcatccaca taggcgcgca ccaactcggc gcaggcggcc
     1261 ggtgtttcct cagggccctt caggatgaag gaacagcccg cggcgagcgc agcggagatt
     1321 ttgcgcacag cctggctcat cgggaagttc cacggcgtga agccggcgac cacgccgacc
     1381 ggctcgcgga gtgaaagctg gtacacgccg gccgcgcgcg ccgggatgac gcggccataa
     1441 gcgcggcggc cctcctcggc aaaccagtcg atgacatcgg cagagccggc gatttcaatg
     1501 cgcgattccg ccagcggctt gccctgctcc atggtcagga gccgggcgat gttttcgccg
     1561 cgctcacgca aaagctccgc tgtcttgcgc agcagcttgc tacgctcata ggcagacatc
     1621 ttgcgccata cggcgagccc cttcgccgca tggtccagcg cctcgtccag atcttctttg
     1681 gaggcgtgag cgagtttgcc gatcacctct tccgtggcgg ggttgataat gtcgagcgtg
     1741 cgcccacccg tggccgcacg ccattttccg ccgacatgca gcaaaacgtc ctgatacata
     1801 agagcaaaat ccttaggcgg tttctttgac gagcttgcgg atgatgtcga tcatcttgct
     1861 gatctcatcc gccgtggcga cgaagggtgg cgccagcacg atggaatcgc cggcggcgcg
     1921 cagcacgagg ccttcctcga aggcgcggcg cagaatcttg aagccgcgct cgccgggctt
     1981 gccgacaggg gcgatctcca ccgcgccgag caggccgaag ccgcgggtat cgacgacgcc
     2041 atccatcccc ttgaaagcgc cgatctgttc aagaaacgcc ggggtcagat cgcggacctg
     2101 ggcaaaaata ttttcctcgc gatagatatt cagcgtcgcc agggccgctg cgcaggcgac
     2161 gggatgcgcc gaataggtgt agccgtggta gaattccaca ctatcggccg gggcagcatc
     2221 gaggatggtc tgctgtacat cctcgcgcac cgctacggcg gccatcggga tgacgccgtt
     2281 ggtcagcgcc ttggccatgg tcatgatgtc cggcaccacg ccaaacgtct cggcggcgaa
     2341 ggcttgaccg gtgcggccga agccggtgat gacctcgtca aagatcagca gaatgccgtg
     2401 cttctgggtg atctcgcgca gccttttcaa atagcccttc ggcgcgggga tcacgccggt
     2461 cgatccggcc atcggctcga ccatcacggc ggcgatggtg ttggcgccat gcagattgac
     2521 gagattttcc agctcgtcgg cgaaatgggc gccatagtcg ggctcgccct tgctgaacgc
     2581 ctgcttttcg cgatcatagg ttgcgggcag atgatcgacg ccggcgagca gcgagccgaa
     2641 gatcttgcgg ttgttgacaa tgccgccgac cgccgtgccg ccgaagccga cgccgtgata
     2701 gccgcgcacg cggccgatca ggcgggtgcg gccgccctgg ccgttgagct gatgataggc
     2761 gagggcgatc ttgagcgcgg tgtccgcggc ttccgagccg gagttgcaga agaagacgtg
     2821 atcgaggccg tcgggtgcga gctcggcgat gcggcttgcg agctcgaagg cctggggaat
     2881 gccgaactgg aacggcggcg catagtccaa cgcctcggcc tgcttggcga tcgcggatga
     2941 aatctgcgcg cggccgtgac ccgcattgca gcaccacatg ccggccgcgg catcgatgat
     3001 cttgcggccg tcgacggtga tgtaatgcat gtcctttgcg ccggcgagca gcctcggcgc
     3061 cttcttgaag gcgcggttgg cggtgaacgg catccagtgc gcggcgaggt cgttcggcac
     3121 gttgacaccg ggagcggcgg gattcttgtc cagcataggg acctctctgc agttcgagcg
     3181 aaaagaatga ttgataccca aactatcagc ttcacactgc gacggaaacg tcaatcgccc
     3241 gcgatatttg ccgcttggcc aagcggattc tgcacgggtc ctcgtcgcgc tctaccccag
     3301 gtcggcggcg gtgatccaga acacctcgcc ctcggactcc gcgctgtcga gccagagcag
     3361 cggcaattgc ggaaatgcc
//
LOCUS       DASQCV010000633         4264 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2788543, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000633 DASQCV010000000
VERSION     DASQCV010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4264
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2788543"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..250)
                     /locus_tag="VEQ16_09815"
     CDS             complement(<1..250)
                     /locus_tag="VEQ16_09815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine kinase"
                     /protein_id="HYP64175.1"
                     /translation="MAITSFDITGIGNAIVDYLLQADDAFLSRHDMPKGAMSLIDAET
                     ATKLTAAMNGGLTASGGSVANSCAVAAALGAKVAFLGKV"
     gene            539..1033
                     /locus_tag="VEQ16_09820"
     CDS             539..1033
                     /locus_tag="VEQ16_09820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019085931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HYP64176.1"
                     /translation="MARSPFAPPPIPAAPAHNPSPVPARATITSMPAREVVERRTLVV
                     GRGISVQGTVQDAERLVVEGTVEATSINGLTELSIAQGGVFKGEVEVEEAEIAGTIDG
                     TLVARQTLVVRSTGRVLGTARCRRLQVEDGGQITGRIEMLGDSSAPSSSSSSSSSLAA
                     EAGH"
     gene            1189..3084
                     /locus_tag="VEQ16_09825"
     CDS             1189..3084
                     /locus_tag="VEQ16_09825"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HYP64177.1"
                     /translation="MRKAALASVAILGAMLGLTVSPPARAGSLYVFGDSLSDDGNIYK
                     LTGQPAPPYFQGRFSNGPVWVEYLPSFTDLSGSSARNFAYGGAFTGTIIVNGTNYGTN
                     LGAPFLPGINTEIAGFTAAGGHFSAGDVVTLWGGGNDYFKYTAVVEANPSQAASLVTF
                     SVSNTISHLTTDATNLAQLGARTLIVPNVPDLGNTPDYNTSALGIALGNAFADLHNAA
                     LPGAMESVHNATGANIIVLNVAQMLNNVIADPALYGFSNATQACINVSSCVNGSTAMQ
                     NSYVFWDGVHPTTHSQYLIARYAAASLNQFEALSIPGQIGTQSALDFNGLLDGRMDAL
                     RAGASGLSYNIGGASGGHADPDHKLAIFISAGGGFGNRANSDMALGYGYRDAVTAIGV
                     DYRFTPNIMAGIALGYGDNHADVNEGGTVHESALDVGMYALGQWSNAFVTFAGSYGHG
                     WYNTQAPGVIGNGPVGKPTGTAYALDAFGGYLFPVLPMAELGPEAGLTYTNTGLGAYT
                     QSGDPLLTQSVYSQGYEQVIATTAAVASGQWQFHNVALSPYARIGAQILLSGRNAKFT
                     SVFTDEPVVTQTSTYPKQPPAWAIFTIGVNAAISDQLSASASLETTGFKSDGNNLLLS
                     AGLRYEF"
     gene            complement(3072..4028)
                     /gene="gshB"
                     /locus_tag="VEQ16_09830"
     CDS             complement(3072..4028)
                     /gene="gshB"
                     /locus_tag="VEQ16_09830"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HYP64178.1"
                     /translation="MTGLKVAVQMDPLHSIDITGDSTFALMLEAQARGHRLWHYEVPS
                     MWLDGARLFARIRPVTVQNVAGAHFEFGAETVTDLADMDVVLMRQDPPFDMAYITATH
                     LLEHIHPKTLVVNNPAAVRNSPEKLLVMRFPHLMPPTIISWDRQVIREFRAVHKDIIV
                     KPLFGNGGIGVFRIRPDDENLGSLLEMFFTASREPLMVQRYEPAVRQGDKRIILIDGE
                     PLGAINRVPAEGDSRSNMHAGGRPEPTRLTVREREICAAIGPTLKAEGLLFTGIDVIG
                     DYLTEINVTSPTGLQQIARFDNLNLAAAIWEKIEAQRADQNS"
     gene            complement(4059..>4264)
                     /locus_tag="VEQ16_09835"
     CDS             complement(4059..>4264)
                     /locus_tag="VEQ16_09835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64179.1"
                     /translation="LRRVDGPAQVWVYESAVCGLQVFLYPDAAGNPRVAAAVPDNGNA
                     ASCMQSFARPGLTSASLERPASS"
BASE COUNT          791 a         1473 c         1257 g          743 t
ORIGIN      
        1 caaccttgcc gagaaacgcc actttcgcgc ccagggccgc cgcaaccgcg caggaattgg
       61 ccacggagcc gccagaggcg gtcagccccc cgttcatcgc cgccgtcagc ttggtcgcgg
      121 tttcggcatc aatcagcgac attgcccctt tgggcatgtc atggcggctt aaaaatgcgt
      181 catccgcctg caacagataa tcgacgatgg cattgccgat tcctgtaatg tcgaaacttg
      241 tgatggccat gcctgcaaac tctccttttg gcgttgcgcc agccgttagc atttcgttca
      301 cattacagca aacctggctc atgttgtccc ggcgcatggc accgtgctag gccgaggtct
      361 gcaacggaag agccacggag gatttgtgtt cggcaaacgc aaaatcgatg agcccgcgcc
      421 ggccaagccg caaccggcgc ccgccgcgcc agagcctgtc cgggccgagg ctgacgccac
      481 accggaagag acaagtccgg ccgatgcccc tgttccccca gttatcaagg agtcccccat
      541 ggcccgttcg ccctttgccc cgccgcccat tccggctgct cccgcccaca accccagccc
      601 cgtacccgcc cgcgccacca tcaccagcat gccggcgcgc gaggtggtcg agcgacgcac
      661 cctggtcgtc ggccgcggca tcagcgtgca gggcacggtg caggatgctg agcgcctggt
      721 cgtggaaggc acggtggaag ccaccagcat caacgggctg accgagctct ccatcgccca
      781 gggcggcgtg ttcaagggcg aggtcgaggt tgaggaagcc gagattgccg gcaccatcga
      841 cggcacgctt gtcgcccgcc agaccctggt ggtgcggagc acgggccgcg tgctgggcac
      901 ggcgcgctgc cgccggctgc aggtggaaga tggcggccag attaccggcc gcatcgagat
      961 gctgggggac tcttccgccc cctcctcctc ctcctcctcc tcctcttccc tggccgccga
     1021 agccggacat taagggctga cgcccgggcc gcggcatttt gccgccgccc cggcgctgcc
     1081 ggcatatttt gataatatct tgacagaata aaaatatcgg ccttgctata gcgcctaacg
     1141 ataacgtgag gcgcggcgca gccgcgactc aacagggaga cgcgagccat gcgcaaagcc
     1201 gctcttgcca gtgtggcgat tctcggggcg atgctgggtc tgaccgtcag cccgccggcc
     1261 cgcgccggca gcctctatgt gttcggcgac agtctctccg acgacggcaa tatctacaaa
     1321 ctcactggcc agccggcccc gccctatttt cagggacgtt tttccaacgg gccggtctgg
     1381 gtggaatatc tgcccagctt caccgatctg agcggctcct cggcccgtaa cttcgcctat
     1441 ggcggcgcct ttaccggcac catcatcgtg aacggcacga attacggcac caatctaggc
     1501 gcgccgttcc tgcccggcat caacacggaa atcgccggct tcacagctgc cggcggacat
     1561 ttcagcgccg gcgatgtcgt tacgctgtgg ggcggtggaa atgattactt caagtatacc
     1621 gcggtggtgg aagccaaccc gtctcaagcg gcctcgctcg tcaccttcag cgtcagcaac
     1681 accatcagcc atctcaccac ggatgcgacc aatctcgccc agcttggcgc gcgcaccctc
     1741 atcgtgccga acgttccgga cctcggcaac accccggact acaacacctc cgcgctcggc
     1801 atcgcgctgg gcaatgcctt cgccgacctg cacaatgccg ccctgcccgg cgccatggag
     1861 agcgtgcata acgccaccgg cgccaacatc atcgtgctga acgtggcgca gatgctcaat
     1921 aacgtcatcg ccgacccggc gctctatggc ttcagcaatg ccacccaggc ctgcatcaat
     1981 gtctcctcct gcgtcaatgg cagcaccgcg atgcagaatt cctacgtgtt ctgggacggg
     2041 gtgcacccca ccacccactc gcaatatctc atcgcccgct atgccgccgc ctcgctcaac
     2101 cagttcgagg ctttaagcat ccccggccag atcggcaccc agagcgccct ggatttcaac
     2161 gggctgctcg atggccggat ggacgcgctg cgcgccgggg catccggcct gagctacaac
     2221 atcggcggtg cctccggcgg ccatgccgat ccggaccaca agctcgccat cttcatcagc
     2281 gccggcggcg gcttcggcaa tcgcgccaat agcgacatgg cgctcggcta tggctaccgc
     2341 gatgccgtca ccgccatcgg cgtggattac cgtttcaccc ccaacatcat ggccggcatc
     2401 gcgctgggct atggcgacaa ccatgccgat gtgaatgagg gcggcacggt gcatgagagc
     2461 gcgctggatg tcggcatgta cgcgctgggg caatggtcca atgcttttgt gacattcgcc
     2521 ggctcctacg gccatggctg gtacaacacg caagcccctg gcgtcatcgg caacggcccc
     2581 gtgggcaagc cgaccggcac cgcctatgcg ctggatgcgt tcggcggcta tctcttcccc
     2641 gtgctcccca tggcggagct ggggccggaa gccgggctca cctacaccaa cactggtctc
     2701 ggcgcctata cgcagagcgg cgacccgctg ctcacccaga gcgtctacag ccagggctat
     2761 gagcaggtca ttgccaccac cgccgccgtg gccagcgggc agtggcaatt ccacaatgtg
     2821 gcgctttccc cctatgcgag gatcggcgcg cagattctgc tgtccggccg caacgccaaa
     2881 ttcaccagcg tctttactga cgagccggtg gtgacccaga ccagcaccta tcccaagcag
     2941 ccgcccgcct gggccatctt cacaattggc gtcaatgccg ccatcagcga ccagctttcg
     3001 gccagcgcca gcctggaaac caccggcttc aagtccgacg gcaataatct gcttctttcc
     3061 gccgggttgc gttacgagtt ctgatccgca cgctgggcct cgatcttctc ccatatggcg
     3121 gcggcgaggt tgagattatc gaagcgcgcg atctgctgca gccccgtcgg cgatgtcacg
     3181 ttgatttcgg tcaggtaatc accaatcacg tcgatacccg taaagagcag cccctccgcc
     3241 ttcaacgtcg gcccgatggc ggcgcaaatc tcgcgctcgc ggacggtcag cctggtcggc
     3301 tccggccgcc cgcccgcatg catgttggag cgcgaatccc cctcagccgg gacgcggttg
     3361 atggccccca gcggctcgcc atcgatgagg atgatgcgct tatccccctg gcgcaccgcc
     3421 ggctcatagc gctgcaccat cagcggctcg cgcgaggcgg tgaaaaacat ttccagcagc
     3481 gagccgagat tctcgtcatc cggccggatg cggaacacgc cgatgccgcc attgccgaac
     3541 agcggcttga cgatgatgtc cttgtgcacg gcacggaatt cgcggatcac ctggcggtcc
     3601 cagctgatga tggtcggcgg catcagatgc gggaagcgca tcaccagcaa tttctcaggc
     3661 gaattgcgca cggcggccgg gttgttcacc accaaggtct tcgggtggat atgctccagc
     3721 aaatgggtgg cggtgatata ggccatgtcg aaaggcgggt cctggcgcat cagcaccaca
     3781 tccatgtccg ccaaatccgt gaccgtctcg gcaccaaatt caaaatgcgc gccggcgaca
     3841 ttctgcaccg tcaccggccg gatgcgggcg aagagcctgg cgccatccag ccacatagac
     3901 ggcacctcgt aatgccacag gcgatgcccg cgcgcctgcg cctccagcat gagggcaaag
     3961 gtggaatcgc cggtgatgtc gatgctgtgc agcgggtcca tctgcacggc cactttcaat
     4021 cctgtcatac cgtcctcaca atcaacggtg acaagctatc aggaggaagc cgggcgctcc
     4081 agagaggcgg atgtcaggcc agggcgggca aaactctgca tgcagctcgc cgcgttgcca
     4141 ttatcgggca cggcggcggc cacgcgggga ttgccggcgg cgtcagggta aagaaagacc
     4201 tgcaggccgc aaaccgcgga ttcatagacc cacacctggg ccggaccatc gacacgccgc
     4261 agca
//
LOCUS       DASQCV010000634        11337 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1463504, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000634 DASQCV010000000
VERSION     DASQCV010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 11337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11337
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1463504"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..758
                     /locus_tag="VEQ16_09840"
     CDS             <1..758
                     /locus_tag="VEQ16_09840"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP64180.1"
                     /translation="ITGAGGGIGRATAEKCAAEGAKIICADLHAAPAEAAASAIRASG
                     GEAVTIIGNLTHEETCRAMFAEGAAAFGGIDVIFNNAGVCLNDDTGPVETPLSAWDAT
                     IAANLTSVFLCCKAGIPHLEAAGGGVIVNNASIVALVGSAFPQIAYTAAKGGVLSMTR
                     ELAVMYARKKIRAVAICPGPTATPLVQAFMADEDAWRLRRKYLPMGRLAQPAEIANVV
                     AFLASDEASFITGSAYTVDGGLTAAYVIDDSTP"
     gene            complement(921..1490)
                     /locus_tag="VEQ16_09845"
     CDS             complement(921..1490)
                     /locus_tag="VEQ16_09845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003628206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HYP64181.1"
                     /translation="MAQLASGPGGLGSSPGAGPAPTPQARTPDIAPPALPGAGGMAPM
                     ATGPVMQKPPSGDPTANLFAAIAKGDANAAQMAIGGGANLNAQNQFGETPLDLSIALN
                     RNNITFLLLQTRNELDAQGVGPEPMGAPWMLDSNTPPGTSKGAAHAKSGTVSVSAPAV
                     PPPSPRIAVQAGNGTPNPEAGFLGFGPKN"
     gene            complement(1622..2203)
                     /gene="phaR"
                     /locus_tag="VEQ16_09850"
     CDS             complement(1622..2203)
                     /gene="phaR"
                     /locus_tag="VEQ16_09850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007438947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate synthesis repressor PhaR"
                     /protein_id="HYP64182.1"
                     /translation="MKETGDTPAQPVIVKKYANRRLYNTESSSYITLDNLADMVRKDR
                     DFVVYDAKTGEDITRAVLTQIIVEEEGKGNALLPTNFLRQLIGVYGSNVPNLVPKYLE
                     QAMTNFAKQQESVRETVSKTLGPFMPPGMEEVGRKNMEMMERAMSLFSPFYQTEAKPE
                     AAPVPVEYQEEIAALRAEVERLQKELAALKGKG"
     gene            2511..3728
                     /locus_tag="VEQ16_09855"
     CDS             2511..3728
                     /locus_tag="VEQ16_09855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYP64183.1"
                     /translation="MSAPRPEAPAPLSRRGPRPLLLHLSLAWLKSSCSTAASLNWSSV
                     SPISWLESQMMQAGTEGAAPDPQTLLTAFEETLRADRALIAGIAAYRAAPYIRDMHDP
                     PAIWEEQESRLLDYGGTGPSVLFVPSLINRAYILDLMEGGSMLRWLAAQNMHPYLLDW
                     GWPGEVERHFTLTDYIAGRLERALSVIQEPVILAGYCMGGLLALAAALRAQPAGKIRG
                     LALLATPWDFHAADPETARRLAESVPALEPTLRFTGTLPIDALNALFTMVDPFGVGDK
                     YRDFAAQDKTLARARRFVAMEDWLADGVPLAAPVAREALSGWYGANTPARGQWRVAGL
                     AVNPESLSIPAFCAIPARDRLVPAISAQALADKLPKVNAITPAAGHIGMVAGTHAESA
                     LWRPFTAWAHSLS"
     gene            3760..4932
                     /locus_tag="VEQ16_09860"
     CDS             3760..4932
                     /locus_tag="VEQ16_09860"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HYP64184.1"
                     /translation="MEDIVIVSAARTPVGSFNGAFAATPAHVLGTVALKAAIERAGLS
                     PEDIDEVILGQVLSAAQGQNPARQAARAAGIPDTKTAFGINQVCGSGLRTVALAAQQI
                     LSGESNIVVAGGQESMSLAPHAQHLRAGHKMGDLGFIDSMIKDGLWDAFNGYHMGVTA
                     ENVAKQYQITRDEQDALALGSQLKASAAQKAGKFKDEIIPVTLSTRKGDVIVENDEYI
                     RHDASAESMAKLKPAFIKDGTVTAGNASGINDGAAALVVMSAKEAAKRGLKPLARIAS
                     FATAGVDPAIMGTGPIPSSRKALARAGWNIADLDLIEANEAFAAQAAAVNKDLGLDPA
                     KVNVNGGAIAIGHPIGASGARILTTLLFEMNKRDAKKGLATLCIGGGMGVAMCLER"
     gene            5081..5791
                     /locus_tag="VEQ16_09865"
     CDS             5081..5791
                     /locus_tag="VEQ16_09865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit A"
                     /protein_id="HYP64185.1"
                     /translation="MAVSKIFPDATAALAGLLKDDMTIMAGGFGLCGIPEALIYAIRD
                     SGVKGLTIISNNAGIDGIGLGVLLETRQVKKMVSSYVGENATFAKQYLAGELEIEFNP
                     QGTLAERIRAGGAGIPAFFTATGYGTQIAEGKDTREFDGRHYVMERGLFADLAIVHAY
                     KGDHEGNLVYRKTARNFNPVMATAAKVTVAQVEKLVETGELDPDQIHTPGVFVKRLIK
                     LDHVEKRIEQRTVRKKEA"
     gene            5796..6440
                     /locus_tag="VEQ16_09870"
     CDS             5796..6440
                     /locus_tag="VEQ16_09870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007439489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit B"
                     /protein_id="HYP64186.1"
                     /translation="MPWTREEMAVKAARELEDGFYVNLGIGIPTLVANHLPEGISIQL
                     QSENGMLGMGPFPYEGEEDADLINAGKQTVTALPSTSFFSSADSFAMIRGGHIDISIL
                     GALQVSEQGDLANWMVPGKMVKGMGGAMDLVAGVKRVVVLMEHTAKGEPKLLKKCTLP
                     LTGKGVVSKIITDLAVFEVTKDGLLLVEHAPDVTVEQIREETEASFKSSANVSA"
     gene            complement(6735..7379)
                     /locus_tag="VEQ16_09875"
     CDS             complement(6735..7379)
                     /locus_tag="VEQ16_09875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008942853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP64187.1"
                     /translation="MLVTKPAKMKMKSKATGASGRLRAFNRDTALRIALKLFCRHGFE
                     GIAIADLTKAMQISPPSFYAAFGNKEILYREALALYQDHTSLGSIGSVGPVREQVRAL
                     LYDVVHAATNPEFPAGCMLATGMVNSSAKHAALAKEVAWLRNTRRQKLAEQLQMAVIR
                     GGLPEGTNIEANARYLMALMQGIAIQARDGVATSGLLAMVDVALARWPGTCESG"
     gene            complement(7460..8284)
                     /gene="panC"
                     /locus_tag="VEQ16_09880"
     CDS             complement(7460..8284)
                     /gene="panC"
                     /locus_tag="VEQ16_09880"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HYP64188.1"
                     /translation="MIIARTLAELHAAREALGPVGFVPTMGALHDGHLALITAARADG
                     LPVAASIFVNPTQFGPKEDFSRYPRDEAGDLAKLEKAGCDLVWLPSVDVMYPPHGATM
                     IHVNGPATHWEGAARPGHFAGVSTVVAKLFGQVRPSAAYFGEKDWQQVQVVRRMVADL
                     HLPVHIVPVPIVREESGLALSSRNAYLTPEERRAAPMLHAALLHAAREIVAGKDVAAT
                     LHQARHEVAQAGMVPDYIALVHAETLEPISGLVHPARLIAAAKLGHVRLLDNIPAD"
     gene            complement(8935..10185)
                     /locus_tag="VEQ16_09885"
     CDS             complement(8935..10185)
                     /locus_tag="VEQ16_09885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012812684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HYP64189.1"
                     /translation="MRFRSVGLLSLSALTLCLAMKPAYAQYFTNHDGYTDDGQYRLQV
                     EISPYLWLPATSGSIAFAHSAIEDRRTGSFGSPVPSLSTLASSLHFSFMGDSILRYGP
                     LSAEVDLQYVDAFASKTLSVEPDGSLNRVHLDASYVRIAPGFGYQVYSGNVFSVPTSV
                     DARVGFSYFTHWERLQGEGNLTGAVGHSGDFIQPWLGTRIDFVPAPRWRLELTAMVQG
                     MGVQNGSWGWGASAILSYAVSSWFDVDAGFRALDTERNHGPLDTPGAPKRALELTAYG
                     PVIGMSFRFGSAPPPPPPMAPIPVAAPAPAPAKTYLVFFDWDKADLTPRATQIIAQAA
                     TDSKTQSVTTIDVNGYTDTTGTPSYNQGLSVRRAEAVERQLVADGVPESEITVQGFGD
                     THLLVPTGPGVREPQNRRVEIVFQ"
     gene            complement(10297..10857)
                     /locus_tag="VEQ16_09890"
     CDS             complement(10297..10857)
                     /locus_tag="VEQ16_09890"
                     /inference="COORDINATES: protein motif:HMM:NF016269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding SYLF domain-containing protein"
                     /protein_id="HYP64190.1"
                     /translation="MITRRKTTLALLSTGGLTFLSAGWARAASAAALVAASNKALANL
                     YALEPNTAVLATRAKGILVFPNIMKAGFLIGAETGDGTFYQNGAATAYYNISAASYGL
                     QAGVESFSYALFFMNDAAVNYLSTSDGWSIGAGPSVVVLDEGKAASVTSSTLTQDVYA
                     IPFGERGLMAGMGLQGCKITRIQPGP"
     gene            complement(11043..>11337)
                     /locus_tag="VEQ16_09895"
     CDS             complement(11043..>11337)
                     /locus_tag="VEQ16_09895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="arylsulfatase"
                     /protein_id="HYP64191.1"
                     /translation="LQEQRAKQMMCWAEPFVKLRLPKMFNLRRDPFERADENSNTYWD
                     WIFDHAFLLYEMQALVAQQIQEFIAFPPRQKPASFNLDEVLRQLQDAGGGAHR"
BASE COUNT         2295 a         3601 c         3371 g         2070 t
ORIGIN      
        1 tcatcaccgg cgcgggcggc ggcatcggcc gcgccacggc ggagaaatgc gccgcggagg
       61 gtgcgaaaat catctgcgcc gacctccatg ccgccccggc cgaggccgcc gcctccgcca
      121 ttcgcgcttc aggcggcgag gccgtgacaa tcatcggcaa tctcacccat gaagagacct
      181 gccgcgccat gttcgcggaa ggcgccgccg cctttggcgg catcgatgtc atcttcaaca
      241 atgcgggcgt ctgcctcaat gacgataccg gccctgtcga aaccccgctc tcggcatggg
      301 atgccaccat cgccgccaac cttacctcgg ttttcctctg ctgcaaggcc gggattccgc
      361 acctggaagc ggcgggcggc ggcgtcatcg tcaataacgc ctccatcgtc gccctggtcg
      421 gctcggcctt cccgcaaatc gcctacaccg ccgccaaagg cggcgtgctc tccatgacgc
      481 gcgaactcgc cgtgatgtat gcccgcaaga aaatccgcgc cgtcgccatc tgccccggcc
      541 ccaccgcgac acccctcgta caagctttca tggcagacga agacgcttgg cgcctgcgcc
      601 gcaaatatct gcccatgggc aggctcgccc aacccgcgga aatcgccaat gtcgtggcct
      661 tcctggcttc cgacgaagcc agtttcatta caggctcggc atatacggtg gatggcggcc
      721 tcaccgccgc ctatgtcatc gacgattcaa cgccttaatt aacgctgccg ctgttcagag
      781 gctgtttcag aagtcgctct ggtgagccag ctggcgtgga ctggcgagca ccggagcgga
      841 gcgtactttc agtacgtgag caccggagcg cagccagacc gcgtcagatg gccgccagag
      901 tagacttatg aaacagcctc tcagttcttg ggcccgaacc ccaggaaccc ggcctcgggg
      961 ttcggcgtgc catttccggc ctgcacggca atacgcggcg aaggcggcgg cacggccggg
     1021 gcggaaacgg acacggtgcc ggacttcgca tgcgccgcgc ccttggacgt gccgggcggg
     1081 gtgttgctgt ccagcatcca gggcgcgccc atcggctccg gaccaacacc ctgcgcatcc
     1141 aactcattac gcgtctgcag cagcaggaag gtgatattgt tgcggttgag cgcgatggac
     1201 aggtccagcg gcgtctcgcc gaactggttc tgcgcattga gattggcgcc gccgccaatg
     1261 gccatctgcg cggcattggc atcgcccttg gcgatcgcgg caaagagatt tgccgtagga
     1321 tcgccggagg gcggtttctg catcaccggc ccggtcgcca tgggggccat cccgcccgcg
     1381 cccggcagag cgggcggcgc gatgtccggc gtgcgggctt gcggcgtcgg cgcggggcca
     1441 gcgccgggcg aactgcccaa gccgccagga ccggaagcca attgcgccat ggcaggcgcc
     1501 gcggcggcag tcagggcaac ccccaggaca gacccgagga ccagggtgcg gaaaacaatc
     1561 atacccgcct ctctagccca agccgggggg cccgtccatg caccggatca aatgcgtaac
     1621 gtcagccctt gcccttgagg gccgccagct ccttctgcag ccgctcgacc tcggcacgaa
     1681 gtgccgcgat ctcctcctgg tactcaaccg gcaccggcgc agcctcgggc ttggcctcgg
     1741 tctggtagaa gggcgaaaac aggctcatcg cccgttccat catctccatg ttcttgcgcc
     1801 ccacctcctc cataccgggc ggcatgaagg gcccgagcgt cttgctcacc gtctcgcgca
     1861 cgctctcctg ctgcttggcg aaattcgtca tggcctgctc aagatatttc ggcacgagat
     1921 tcggcacgtt ggagccgtac acgccgatga gctggcgcag gaaattggtc ggcagcaggg
     1981 cgttgccctt gccttcctcc tcgacgatga tctgggtcaa cacggcgcgg gtgatgtcct
     2041 cgcccgtctt ggcgtcataa accacgaaat cgcggtcctt gcggaccatg tcagccagat
     2101 tatcgagcgt gatgtagctc gaactctcgg tattatatag acgccggttt gcgtattttt
     2161 tcacgatgac aggttgtgcc ggcgtgtctc ccgtttcttt catgaattcg cttccaatcc
     2221 ggttagcggc caaatgacgg tatggttcta tcaaaacacg aattttgtgc gttgcacagt
     2281 atcatgcgcg cctcccctta tggcggccag acgcggatcg cgctaggacg cattggaaca
     2341 ggcgagcgga tctggatgca gcatggacga caaactggcc aaagatctgg tggccatgtg
     2401 gcaaagcgaa ttcaccgcca tggccgcgga cagggaattg cgcgaaacct gggccacgac
     2461 cttggcctta tgggcgcagg cggccaatgc ggccaccgcg ttgctgcctc atgagcgcgc
     2521 cgcgcccgga agcgccggcc ccgctcagcc gccgcgggcc ccggccgctg ctgctgcacc
     2581 tcagcctggc ctggctgaaa tcgagctgct caacagccgc atcgctgaac tggagcagcg
     2641 tctcgccgat ttcatggctg gaaagccaga tgatgcaggc gggcacggag ggggcagcac
     2701 cggacccgca gacactgctg acggcctttg aggagacgct gcgcgccgac cgcgccctga
     2761 tcgccggcat cgcagcctac cgggccgcgc cctatatccg cgacatgcac gacccgccgg
     2821 cgatctggga ggagcaggaa agccggctgc tcgattatgg cggaacggga ccgtccgtgc
     2881 tgttcgtccc cagcctcatc aaccgcgcct atattctcga cctgatggaa ggaggctcca
     2941 tgctgcgctg gctcgccgcg cagaatatgc atccttatct gctcgattgg ggctggccgg
     3001 gtgaggtgga acggcatttt accctcactg actatatcgc cgggcggctg gagcgggccc
     3061 tttccgtcat ccaggagccc gtgattctgg cgggctattg catgggcggg ctgctggccc
     3121 tggcggcggc actgcgcgcg cagcctgcgg gcaaaatacg cggcctcgcc ttgctcgcga
     3181 ccccctggga tttccacgcc gccgaccccg agaccgcgcg ccgcctggcg gaatcggtgc
     3241 cggcgctgga gccaacgctg cgcttcaccg gcacgctgcc catcgacgca ctcaacgccc
     3301 tgttcaccat ggtcgacccg ttcggcgtcg gcgacaaata tcgcgacttc gccgcccagg
     3361 ataaaacctt ggcgcgcgcc cggcgcttcg tggccatgga ggattggctg gccgacggcg
     3421 tgcccctcgc cgcccccgtg gcgcgcgagg cgctgagcgg ctggtatggc gccaatacgc
     3481 ccgcgcgcgg gcaatggcgc gtggctgggc tggccgtgaa cccggaatct ctcagcatcc
     3541 ccgccttctg cgccatcccg gcgcgcgacc ggctggtgcc cgccatttcg gcccaggcgc
     3601 tcgcggataa attgcccaag gtcaatgcca tcacccccgc cgccggccat attggcatgg
     3661 tggccggcac ccatgcggaa tccgcgctct ggcggccttt cacggcatgg gcgcacagcc
     3721 tatcataagt acattccccg caacaaaagg ataagagcca tggaagacat cgtcatcgtc
     3781 tccgccgccc gcacccccgt gggcagtttc aacggcgcct tcgctgccac cccggcccac
     3841 gtgcttggca cagtggccct caaagccgcc atcgagcgcg ctgggctcag cccggaagat
     3901 atcgacgaag tcatcctcgg ccaggtgctc agcgccgcgc aaggccagaa ccccgcccgc
     3961 caggccgccc gcgccgccgg catcccggac accaagacgg ccttcggcat caaccaggtc
     4021 tgcggctccg gcctgcgcac agtggcgctc gcggcacaac agatcctctc cggcgaatcc
     4081 aatatcgtgg ttgctggcgg ccaggagagc atgagcctcg ctccccacgc ccagcacctc
     4141 cgcgccggcc acaaaatggg cgatctcggt ttcatcgaca gcatgatcaa ggacgggctg
     4201 tgggacgcct tcaacggcta tcacatgggc gtcaccgccg agaacgtggc caagcagtat
     4261 cagatcaccc gcgacgaaca ggacgccctc gccctcggct cgcaactgaa agcctcggcc
     4321 gcccagaaag ccggcaagtt caaggatgag atcatccccg tcacgctctc gacccgcaag
     4381 ggcgacgtca ttgtcgagaa cgacgaatat atccgccacg acgcctcggc cgaatccatg
     4441 gccaagctga agcccgcctt catcaaggat ggcaccgtta ccgccggcaa tgcctctggc
     4501 atcaatgatg gtgctgccgc cctcgtcgtg atgagcgcga aggaagccgc caagcgcggg
     4561 ctgaagccgc tggcccgcat cgccagcttc gccaccgccg gcgtggaccc cgccatcatg
     4621 ggcaccggtc ccatcccctc ctcgcgcaag gccctcgccc gcgccggctg gaatatcgcc
     4681 gatctcgacc tcatcgaagc caacgaagcc ttcgccgccc aggccgccgc cgtgaacaag
     4741 gatctcggcc tcgaccccgc caaggtgaac gttaatggcg gcgccatcgc catcggccac
     4801 ccgatcggcg cctccggcgc gcgtatcctc accaccctgc tctttgagat gaacaagcgc
     4861 gacgccaaaa aaggcctcgc cactctctgc atcggcggcg gcatgggcgt cgccatgtgc
     4921 ctcgaacggt aagtcgctcg ttgtcacgga tcgtgccgca cgggggctac gccccctgcg
     4981 gcacaagcct cgaaacgggg cacccaccgc ttgacagcca cacggccccg gcaatagctg
     5041 ccggggcgct aaacatgccc ggtcaactga gagaggaagc atggcggtct caaagatttt
     5101 tcccgatgcg acggcggctc tggcggggct gctaaaggac gacatgacga tcatggccgg
     5161 cggctttggg ctgtgcggca ttcccgaggc gctgatttat gcgatccgcg actccggtgt
     5221 gaaaggcctc accatcatct ccaacaatgc cggcatcgat ggcattgggc ttggtgtgct
     5281 gctggagacg cggcaggtga agaagatggt ctcgtcttat gtcggtgaga acgcgacctt
     5341 cgcgaaacaa tatctcgcgg gcgagctgga gatcgagttc aacccgcagg gcacgctggc
     5401 cgagcgcatc cgtgccggcg gcgcgggcat tccggcgttc ttcaccgcca ccggctacgg
     5461 cacgcagatc gccgagggca aggatacgcg cgagttcgat ggccgccatt acgtgatgga
     5521 gcgcggcctg ttcgccgatc tcgccatcgt ccacgcctat aagggcgacc atgagggcaa
     5581 cctcgtctac cgcaagacgg cgcgcaattt taaccccgtc atggcgaccg ccgcgaaagt
     5641 gaccgtggcg caggtggaaa aactggtgga gacgggcgag ctcgacccgg accagatcca
     5701 cacgccgggc gtgttcgtga agcgcctgat caagctcgac catgtggaaa agcgcatcga
     5761 acaacgcacc gtgcgcaaga aggaggcgta agaacatgcc ctggacacgc gaagaaatgg
     5821 ccgtcaaggc ggcccgggaa ctggaagacg ggttctatgt gaatctcggc atcggcatcc
     5881 cgacgctggt ggccaaccac ctgccggaag gcatctccat ccagctgcag tccgagaacg
     5941 gcatgctcgg catgggcccc ttcccctatg agggcgagga ggatgccgac ctcatcaatg
     6001 ccggcaagca aaccgtcacc gccctgccca gcaccagctt cttctcctcc gccgactcat
     6061 tcgccatgat ccgcggcggc catatcgaca tttccatcct cggcgcgctg caagtgtccg
     6121 agcaaggcga cctcgccaac tggatggtgc cgggcaagat ggtaaagggc atgggcggcg
     6181 ccatggacct cgtcgccggc gtgaagcgcg ttgtagtcct gatggaacac accgccaagg
     6241 gcgaaccgaa actgctgaag aaatgcacct tgcccctcac cggcaagggc gtggtctcca
     6301 agatcatcac agacctcgcc gtgttcgagg tcacgaaaga cggcttactc ctcgtcgaac
     6361 atgctccgga cgtcaccgtg gagcaaatca gggaagagac ggaggcatcc ttcaagagca
     6421 gcgctaacgt atcagcctag gacgagaacc acccataccc cctttatgcc attccactat
     6481 tgaccttcgg tgtagaggcc agtgccgtac agtcctgctc gacatgatat gtctcgtcat
     6541 cagaatattg gatggaagga gggcaaaact gtacgaaggt cagctaagat atattttggt
     6601 cgactcacca gtgagacaac taagcccagt cggctcggct agctctgaga cagaccgtta
     6661 cgaatgtgtt tatagtttcg attgaacaat tcgaacgact tcatgaaaga aagagggcca
     6721 aacaagcata gcggttagcc gctttcacag gtgcctggcc aacgcgccag ggcgacatcc
     6781 accatagcta aaagaccgga cgtagcaaca ccatctcggg cctgtatagc aatcccctgc
     6841 atcaaggcca tgagataacg ggcgttcgcc tcgatattcg ttccctcagg cagaccaccg
     6901 cgtattacgg ccatttgcaa ctgctcagcc aacttttgac gacgcgtgtt tcgtagccaa
     6961 gcgacctctt tcgctaaggc ggcatgcttg gcgctgctat taaccatacc agtagccaac
     7021 atgcagcccg ccggaaactc gggattcgtt gcggcgtgca cgacatcgta cagtaacgca
     7081 cgtacctgct ctcggacagg tccaaccgac ccgatacttc ccaggctggt gtggtcttga
     7141 taaagagcca gcgcctcgcg atacaggatt tccttgttgc caaaggctgc gtaaaagcta
     7201 ggcggcgaaa tctgcatcgc cttcgtcagg tcggcaatag caatcccctc gaaaccatgc
     7261 ctacaaaata acttcagggc aatacgaagc gccgtgtcac ggttgaacgc tctcagtcgt
     7321 cctgacgctc cagtggcttt tgacttcatt ttcatctttg ccggtttagt cacaagcatt
     7381 tctgcttgaa gacacgcgta tgtgttttag gaaccaccgc tattcgtaaa ctacttggta
     7441 gctgcgtcat tctttgatat taatcggccg gaatattatc cagcagccgc acatggccga
     7501 gcttggcggc ggcgatgagg cgggcggggt ggacgaggcc ggagataggc tccagcgtct
     7561 cggcatggac gagggcgata tagtccggga ccatgccggc ttgggcgacc tcgtggcggg
     7621 cctggtgcag ggtggcggcc acgtccttgc cggcgacgat ctcccgcgcc gcatgcagca
     7681 aggcggcgtg cagcattggc gcggcgcggc gttcctctgg cgtgagatag gcgttgcggg
     7741 aggacaaagc gaggccgctc tcctcgcgca caatcggcac gggcacgatg tgcacgggca
     7801 ggtgcaaatc ggccaccatg cggcggacca cctgcacctg ctgccagtct ttttcgccga
     7861 aataggccgc gctggggcgg acctggccga aaagtttcgc caccacggtg gagacccccg
     7921 cgaagtggcc aggacgggcg gcgccttccc aatgggtggc ggggccattc acatggatca
     7981 tcgtcgcgcc atgcggcggg tacatcacat cgacgctcgg cagccagacg agatcgcagc
     8041 cggctttttc cagcttggcg agatcccctg cctcgtcgcg cgggtagcgg gagaaatctt
     8101 ccttgggccc aaactgggtg ggattgacga agatgctggc ggccacgggc agcccgtccg
     8161 ccctggcggc ggtaatgagg gccagatgcc cgtcatgcag cgcccccatg gtcggcacga
     8221 atccgaccgg ccccagcgcc tcgcgcgccg cgtgcaattc agcaagtgtt ctggcgatga
     8281 tcattggcgg cggtgttgac cattttccat gtgccgtcca ctcctgcatc gagtgctggt
     8341 ttttacagcg aaaatccatg agaaagctct gatagagctg gaggtcaaac tgctcgcaca
     8401 gtcacaacac taaagcatgg gggcgcacca tgggagacac cattccacga atttcctcga
     8461 tagatcctcg gaccaaagat cggcttgaag taccctttgc gcggcgaggc ggtagacgac
     8521 atcgtttttc cggacaggat tctccaacca caaagcccat ccattagcct ccttaaggcg
     8581 gaaagccggc tgaaaccgcc atgttagtaa aacccagttc aactcgtgta cctcgagtgc
     8641 gggttttcga tcgggaccgg atccgtgcga atggcaccat ggccagcggc acgtgaatag
     8701 gcggcattaa aggccgaaca cacgagcact ccaaccagca gcatgccgac actcaaaaaa
     8761 cacttgctaa ctaggtgccg tctacacaca agttacaaat ccgggaatgc ggatgtcggg
     8821 ctgcatgcac gctagcgtgc aaacgaccaa aatcattttt tgaatagtgc ttcatatctg
     8881 ggcggaggcc ggccttacgc cgtatcccac accccatgat caaacatgat tatgttattg
     8941 aaagacgatc tccacgcgac ggttctgcgg ctcgcgtacg ccggggccgg ttgggacgag
     9001 cagatgggta tcgccgaacc cctgcacggt gatctcggat tccggcacac catcggcgac
     9061 caattgcctt tcgacggcct cggcgcgacg cacggaaagg ccctggttgt aggaaggcgt
     9121 gccagtggta tcggtgtagc cgttgacatc gatggtcgtc acactctggg ttttgctgtc
     9181 cgtcgccgct tgcgcgatga tctgcgtggc gcggggcgta aggtcggctt tgtcccagtc
     9241 gaaaaagacg agataggtct tggccggtgc tggcgcggga gccgcgacag gtattggcgc
     9301 catcggcggc gggggtgggg gcgcgctgcc gaagcggaaa ctcatgccaa tgaccgggcc
     9361 gtaggcggtc agctccaatg ctcgcttggg tgcaccaggc gtatcgagcg gaccgtggtt
     9421 acgttccgtg tcgagggctc gaaacccggc atccacatcg aaccaactgc tgacggcata
     9481 agaaagtatg gcggatgcgc cccagcccca ggatccattt tggacaccca ttccctgcac
     9541 catcgcggta agttccagcc gccagcgtgg cgcaggaacg aagtcgatcc gcgtgccaag
     9601 ccatggttgt atgaaatcgc cgctatggcc gaccgcgcct gtcagatttc cttcaccctg
     9661 caatctttcc caatgcgtga agtaggagaa gccgacacgc gcgtcgacag atgtcggaac
     9721 cgaaaagaca ttgccgctgt aaacctgata accaaagccc ggtgcgatgc gaacataaga
     9781 cgcgtccaaa tgaacgcggt ttaggctgcc atcaggctca acggacaacg tcttgctagc
     9841 aaaagcatcg acatattgca ggtcaacttc agcagacaaa ggaccgtatc gcaaaatgct
     9901 atcgcccatg aaagaaaaat gtagcgatga ggccagagtg ctaagggatg gcacagggct
     9961 gccgaaactg ccagttcgac gatcttctat ggccgaatgt gcaaaagcga ttgacccgct
    10021 agtggctggc agccacaaat agggggagat ctcgacctgc agtcgatatt ggccatcgtc
    10081 agtatagcca tcatggttgg tgaaatattg cgcatacgcc ggcttcatgg ccaggcacaa
    10141 cgttagcgcc gaaagcgaaa ggaggccaac tgaacggaat ctcattttgg ttctccttaa
    10201 attttgctgc aaagttttgc cagaaacaaa tcagctacta tgcatctgct ccgctggtat
    10261 agatcaacgt tagggtgttt ctgttcattg atgtcattat ggccccggct gaatccgcgt
    10321 gatcttgcat ccctgaagtc ccatgccagc catcaacccg cgttctccaa aaggaatggc
    10381 atagacatcc tgcgtcagcg tgctgctggt cacgctggcc gctttacctt cgtccagcac
    10441 caccacactc ggaccggcgc cgattgacca gccatcgctg gtactcaagt aattcaccgc
    10501 ggcatcattc atgaaaaaca aggcgtagct gaaagattcc acccctgcct gcaacccgta
    10561 ggaagcggcg gaaatgttat aataagcagt cgccgcgccg ttttgataga aagtaccatc
    10621 gccagtctcg gcgccgatga ggaaaccggc tttcatgata ttggggaaga ccagaatacc
    10681 cttcgcccta gtggcgagaa ccgccgtgtt tggctcaagc gcgtaaaggt tggcaagcgc
    10741 cttgttggat gcggcgacca gcgccgcggc ggacgcggcc cgtgcccacc cggcggacaa
    10801 gaatgtcagc ccgccagtgg ataacagggc aagcgtggtt ttacggcggg tgatcatgga
    10861 gacacctcca aagtctgaac aaatcctgag gcggtgcggt tacccgtcac cgcctcttta
    10921 gccctcttac tggctgacca cgttgttgtg gtgcgcctgt tgcagcttct gtatgtccgc
    10981 cgctgaaagc tgcggccggt cgatctttag gttcaaattc aggcacggtg acacaaagag
    11041 aattaccggt gcgcgccacc accggcgtcc tggagttggc gcaggacctc atcgagattg
    11101 aaggaggctg gcttctggcg cggcgggaac gctatgaatt cttggatctg ctgtgcgacc
    11161 aaagcctgca tctcatagag caggaaggca tggtcgaaga tccaatccca ataagtgttc
    11221 gagttctcgt ccgcacgctc aaaggggtcg cgccgcaaat tgaacatctt aggtagccgc
    11281 agctttacga acggctcggc ccaacacatc atctgcttgg cgcgctgctc ttgcaat
//
LOCUS       DASQCV010000635         3078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2126318, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000635 DASQCV010000000
VERSION     DASQCV010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3078
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2126318"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1737
                     /locus_tag="VEQ16_09900"
     CDS             <1..1737
                     /locus_tag="VEQ16_09900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HYP64192.1"
                     /translation="PLSQILPALRALMRMDEVWLAMLATAVGVAGGLGVVIINGATAW
                     MHRFLFALPPGQGLSESPSLDPTRAILVPLLGGLVLGLSMSALAKLRPRNLVDPIEAN
                     ALYGGRMSLRDSLIVSLQTLWSNGVGASVGLEAGYAQFGAGVASWVGQKLRLRRNDLR
                     VLVGCGAASAIGGAFNAPLCGAFYGIELIIGVYSIATLPFVVLAALAGTLTVQIAGMA
                     SPPLIVTLPTDVPHDAYGLILIEGFACGLAGIVIMRGVTAIEALFRRSGIPLWARPLI
                     GGLVVGALGCLTPKAMSSGHSALHAYINVSFPFVIVLGIFVAKAVASAFSIGAGFRGG
                     LFFASLFLGAIFGKVFAGIVGIMPFVTPMPSGLHAVVGMSGLAAAIVGGPMTMTFLAL
                     ESTENFAVTMAVLAAAIAATITVRRLFGYSFATWRFHLRGEQIRSAVDVGWLKTLTVG
                     RMMRPVAAAVRAKSSLQAFRQDVPLGAAQRAVVTDEEGRYAGIAYPAEAAVLAEDRTV
                     ESILHLQDQFLLPGMSVKEALAAFEAAQADALVVLDGPGTRQVLGVLTEQYALRRYNE
                     ELDRRRREMAGE"
     gene            2121..>3078
                     /locus_tag="VEQ16_09905"
     CDS             2121..>3078
                     /locus_tag="VEQ16_09905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64193.1"
                     /translation="MSGTGDVTFGGSGYFPGMVTISASSLFGSLGSSSVNDLIKTFLT
                     NVTDGVTTSGINFANWDLPASAVLAGESVTGSTTNRVDQYADMTTGGGTTSGSAAPAT
                     VGSSSQDVLMQFSGNVTLAGNSGTQTLVIGDSTNADYTVTDAAAGTMFLAGGANSVTL
                     YNTSGSTNESIYSAGNDTINLHGSGSAVVSIYGNGTVIDQDVNASVVAAGSASVGLHW
                     ENVNSGGTLHFVNNSSVAATIYIGNQGSQFASTRVTADGGAGGGFFVGGSSGQNSLVG
                     GSGVVTLLGAGAGDFLEAQSSIGTNVLGQGVGLETLVATSTTG"
BASE COUNT          499 a          912 c          988 g          679 t
ORIGIN      
        1 cccctctccc agatcttgcc ggcgctgcgc gcgctgatgc ggatggacga ggtctggctg
       61 gcgatgctgg ccaccgccgt tggggtggcg ggcgggctgg gcgtggtgat catcaatggc
      121 gctacggcct ggatgcatag attcctgttc gccttgccgc cggggcaggg gctttccgag
      181 tcgccgtcgc tcgacccgac gcgcgccata ctggtgccgc tgctgggcgg gctggttctg
      241 gggctatcca tgtcggccct ggccaagttg cgcccgcgta atctggtcga cccgattgag
      301 gccaatgctt tgtatggcgg gcgcatgtcg ttgcgcgatt cgctcatcgt gtcgctgcag
      361 acgctctggt ccaacggcgt cggcgcctcg gtggggctgg aggcgggcta tgcccagttc
      421 ggcgcgggcg tggcctcctg ggttggacag aaattgcggc tgcggcgcaa tgatctgcgt
      481 gtgctggtgg ggtgcggcgc ggcatccgcc attggcggcg ccttcaacgc tccgctttgt
      541 ggcgcgttct acggcatcga gctgatcatc ggcgtctatt ccatcgccac tttgcctttc
      601 gttgttctgg ctgccctggc cggcacgctg acggtgcaaa ttgccggcat ggcctcgccg
      661 ccgctcatcg tcaccttgcc cacggatgtg ccgcatgacg cctatggtct catcctcatc
      721 gagggctttg cctgcgggct ggctggcatc gtcatcatgc gcggcgtcac cgccatcgag
      781 gctttgttcc ggcggtccgg catcccgctc tgggcgcggc cgctgatcgg cgggctggtg
      841 gtgggggcgc taggctgcct gacgccgaaa gcgatgtcct ccggccattc ggcgctgcac
      901 gcttatatta atgtttcttt tccgttcgtt atcgtgctgg gcatcttcgt ggccaaggcg
      961 gtggcctcgg ccttctccat cggtgctggc ttccgcggcg gcctgttttt cgcctcgctg
     1021 ttcctcggcg ccatattcgg caaggtgttc gccggcattg tcggcatcat gcccttcgtc
     1081 acgcccatgc cgtccgggct ccacgccgtg gtgggcatga gcgggctcgc cgccgccatt
     1141 gtcggcgggc cgatgaccat gaccttcctt gccctggaga gcacggagaa tttcgccgtc
     1201 accatggcgg tgctggccgc ggccattgcc gccaccatca ccgtgcgccg gctgttcggc
     1261 tatagcttcg ccacctggcg cttccatttg cgtggcgagc agatccgctc ggccgtggat
     1321 gtcggctggc tgaagaccct gacggtgggg cggatgatgc ggcccgtcgc ggcggcggtg
     1381 cgtgccaaat ccagccttca ggcgttccgc caggacgtgc cgctgggggc ggcgcagcgc
     1441 gcggtggtga cagacgagga ggggcgctat gccggcatcg cctaccccgc ggaggcggcg
     1501 gtcctggcgg aggacaggac ggtcgaatcg atcctgcatc tgcaggacca gttcctcctg
     1561 cccggcatga gtgtgaagga ggcgctggcc gccttcgagg ccgcccaggc cgatgcgctg
     1621 gtggtgctcg acgggcccgg cacccgccaa gtgctggggg tgctcacgga gcaatatgcg
     1681 ctgcggcgat acaacgaaga gttggataga cggcgccggg agatggccgg agagtagtaa
     1741 tggcacctga tttgttacca gaatgacatt aatgcccgag gttgatgtaa cgtatttttg
     1801 attggtaaac gtcttttaat gaaaaactgt gtaaaatttt aggctggtga ctaaaaccca
     1861 agaaaaaagc aggcttcatc gcctaaattg tgatttagga tgcgaaatcg tctcaaaaat
     1921 ttgtttgttt tttataaaaa agtcaaaaaa aatctataaa ataatacaat tcaaattatg
     1981 tgaagcataa ctccgtatat ctgccatgca gacgccattt ctgaagacgg ctttgggttt
     2041 ttgctaatct cttttttctt gattccactg cagtgcaacg gtaaggccga cggaacaggc
     2101 ggaatcaagg ggtgcttcaa atgagtggga cgggcgatgt aacgtttggc ggttcgggtt
     2161 actttccggg catggtcacc atttcggcgt cgtcgctctt cggctcgctt ggctcaagct
     2221 ccgtcaacga ccttatcaag accttcctga ccaatgttac ggacggtgtg accaccagcg
     2281 gcatcaattt cgcgaactgg gatcttccgg ctagcgccgt gctggcgggc gaatcggtga
     2341 ccggcagcac caccaaccgg gtcgatcaat atgcggacat gaccacgggt ggcggcacca
     2401 cgtctggttc tgccgccccg gcgacggtcg gttcctccag ccaagacgtg ctcatgcagt
     2461 tctctggcaa cgtcaccctg gccggcaatt ccggcacgca gaccctggta atcggcgaca
     2521 gcaccaatgc cgattatacc gtgacggacg ctgccgcggg cacgatgttc ctggcgggcg
     2581 gcgccaactc ggtcactttg tacaacacat cgggcagcac caacgaatcc atctattccg
     2641 ctggcaatga cacaatcaac ctgcatggca gcggctctgc cgtcgtgtcg atctatggca
     2701 acggcactgt gatcgaccag gatgtcaatg cctccgtggt ggcggccggc agcgcgagtg
     2761 tcggcctgca ctgggagaac gtcaattccg gcggtacgct gcatttcgtc aataactctt
     2821 ccgttgccgc caccatctat atcggcaacc agggtagtca gttcgccagc accagggtca
     2881 cggccgatgg cggcgcgggt ggcggcttct tcgttggcgg ctcttcgggc caaaactctc
     2941 tggtcggtgg ctcgggcgtt gtcaccctcc tcggtgccgg tgcgggcgac ttcctggagg
     3001 ctcagtccag cattggcacg aatgttctgg ggcagggtgt tggcctcgaa acgctggtgg
     3061 cgacgtccac gaccggtt
//
LOCUS       DASQCV010000636         1628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2788835, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000636 DASQCV010000000
VERSION     DASQCV010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2788835"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1399
                     /locus_tag="VEQ16_09910"
     CDS             <1..1399
                     /locus_tag="VEQ16_09910"
                     /inference="COORDINATES: protein motif:HMM:NF015737.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004721 - phosphoprotein phosphatase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HYP64194.1"
                     /translation="CSSGKDRTGWVAAMLQSIAGMSSADIMANYLATDTYSAASINAA
                     AKINPAIGTILGVQAPDLQAGLNQIIASYGSLDNYLKEGLGMSQAEIYVLRAKMVYYA
                     VLPGQDGDPGNGANGAAFINALQNSSLSGHYTTFNYYLQSAIDAGTLGGVPAQIGGQV
                     IADTESYLTRLPLLTNSIIAPYTSGANLDAGQTKIWEANLAGVLSTDGNSNVASSNSR
                     SAGLLIGATHRINTQTSINGGVGYDWGTVSSAGGDAQVNAFLTTLGARYGFANLEHGP
                     FVSGGVNFDVVSTHDNRQLGGGIGGAYGNSNGEVYNGHVEFGSVLQSGAVLVTPQLGF
                     DVSYAELRGFTEQGNGVPLRFAPMSDTLPSVTASLEFAMPGKQAGEWSISPTATFGYT
                     RLLSSPIVVSHADFEGFGVSQLSAFNSRDLGTLAVDVNAQRGPLSLDAGVMGIVGSAN
                     SSTGISGRLAVTYRF"
BASE COUNT          306 a          522 c          503 g          297 t
ORIGIN      
        1 ctgttcctct ggtaaggacc gcaccggctg ggtggcggcc atgctgcaga gtatcgccgg
       61 catgtcatct gccgacatca tggccaatta tctcgccacc gacacctact cggctgcctc
      121 cattaacgcg gcggcaaaaa tcaatcccgc cataggcacc atcctgggcg tccaggcccc
      181 agatttgcag gccgggctca accagatcat cgccagctat ggctcgctcg ataactatct
      241 aaaggaaggc ctcggcatga gccaggctga gatctacgtg ctgcgcgcga agatggttta
      301 ttatgccgtg ctgcccgggc aggacggcga ccccggcaac ggcgcgaacg gcgccgcctt
      361 catcaatgcg ctgcagaact cctcgctgtc cggccactac acgacgttca attactacct
      421 gcaatccgcc atcgatgcag ggacgctggg cggcgtgccg gcacagatcg gcggccaggt
      481 gatcgcggac acggaatcct acctcacccg cctgcctctg ctcaccaaca gcatcatcgc
      541 gccttatacg agcggcgcca atttggatgc cggccagacc aagatctggg aagcaaacct
      601 cgccggcgtg ctctccaccg atggcaacag caatgtcgct tcttcgaaca gccgcagcgc
      661 cgggctgctg atcggcgcga cgcaccgcat caacacacag accagcatca atggcggcgt
      721 gggctatgat tggggcacgg tgagcagcgc gggcggcgat gcgcaggtga atgcgttcct
      781 caccaccttg ggcgcgcgct acgggtttgc gaacctggag catgggccgt tcgtctccgg
      841 cggggtcaat ttcgatgtgg tcagcacgca tgacaaccgc cagctcggcg gcggaattgg
      901 cggcgcatac ggcaacagca atggcgaggt gtataacggg catgttgaat tcggcagcgt
      961 cctccagtcc ggcgccgtgc ttgtcacgcc gcagctgggc ttcgatgttt cttatgccga
     1021 attgcgcggc ttcaccgagc agggcaatgg cgtaccgctg cgtttcgcac cgatgagcga
     1081 cacgctgccg agcgtcaccg ccagcctgga attcgccatg cctggcaagc aggctgggga
     1141 atggagcatc agccccacag cgaccttcgg ctatacgcgc ctgctgagca gcccgatcgt
     1201 ggtcagccat gccgattttg aagggtttgg cgtgagccag ctctcggcct tcaacagccg
     1261 cgatctcggg acgctcgccg tcgatgtcaa cgcccagcgc ggtccgctca gcctggatgc
     1321 cggcgtgatg ggcatagtgg gcagtgccaa tagcagcacc ggcatttccg gccggctggc
     1381 tgttacctac cgcttctaac accgcaaggg cgcgggcctt gggtccgcgt ccggcaagat
     1441 tttcatgacc agccactccg tgccgtgtat cgtcatggca aaaacggagg agcgagaatg
     1501 tcagcctatg ccacgcatga ggttctgaac cagccgccgc tgctcggcga tttcagtgcc
     1561 tggacgatgg atgcgccact gcgcgaggcg gttgccgctt ttggcgccgg ctgggcggag
     1621 caaaggct
//
LOCUS       DASQCV010000637         5797 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2126538, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000637 DASQCV010000000
VERSION     DASQCV010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5797)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5797)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5797
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2126538"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..169)
                     /locus_tag="VEQ16_09915"
     CDS             complement(<1..169)
                     /locus_tag="VEQ16_09915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HYP64195.1"
                     /translation="MASNNTGRVTQILGAVVDVQFEGTLPFIQNALETKIGERRLVLE
                     VAQEIGERTVRC"
     gene            complement(182..1057)
                     /locus_tag="VEQ16_09920"
     CDS             complement(182..1057)
                     /locus_tag="VEQ16_09920"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HYP64196.1"
                     /translation="MPSLKTLRNRINSVKSTQKITSAMKMVAAAKLRRAQAQAEAARP
                     YAVRMGEMLAALAASEAGNPNANPLLVGNGKSQTHLIVAVTADRGLAGAFNANVAKAV
                     RAEVKALQAQGKAVKIFALGRKGNETLRRDLKDLIIGTKNFVGRKSVGFAEAEAAAHE
                     LIRGFKAGEYDVVTMVFNRFHNVMVQRVTEQPLIPAAKPTANDNDTEHNYEVEPDDGS
                     LLDRLLPRNLAVQIYSALLENNAGFYASQMTAMDSATRNAGEMIKKLTLNYNRARQAN
                     ITKELIEIISGAEAV"
     gene            complement(1062..2594)
                     /gene="atpA"
                     /locus_tag="VEQ16_09925"
     CDS             complement(1062..2594)
                     /gene="atpA"
                     /locus_tag="VEQ16_09925"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HYP64197.1"
                     /translation="MEIRPAEISEILKRQIADFDTEANVAETGQVLSVGDGIARVFGL
                     ANVQAGELVDFPGAGIKGMALNLEADNVGVVIFGDDKSIREGDNVTRTGQIVDVPVGK
                     GLLGRVVDALGNPIDGKGPVLFSERRLVETKAPGIIPRKSVHEPMSTGIKAIDVLVPI
                     GRGQRELIIGDRQTGKTALIVDTIINQKAINATGDESKKLYCIYVAVGQKRSTVAQLV
                     RTLEEYGVLEYSIVVAATASDPAPMQYLAPYTGCAMGEFFRDNGMHALIGYDDLSKQA
                     VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDDKGAGSLTALPVIETQAGD
                     VSAYIPTNVISITDGQIFLETELFFKGVRPAINVGLSVSRVGSAAQIKAMKQVAGKIK
                     LDLAQYREMAAFAQFSSDLDPATQKLLARGARLTELLKQPQFKPLSTAEQVISVFSGT
                     RGYLDGLAVDKVQEFEATLLSSVNASAPEIVKAIEADQQIKPETEQKLIAFIENLLRT
                     FG"
     gene            complement(2596..3159)
                     /gene="atpH"
                     /locus_tag="VEQ16_09930"
     CDS             complement(2596..3159)
                     /gene="atpH"
                     /locus_tag="VEQ16_09930"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit delta"
                     /protein_id="HYP64198.1"
                     /translation="MADITGTGETGLPARYAAALYALAFERGVLNDVVAQMEALGRLI
                     AESPALKQLLANPLTDLAKAGPVLDEALKAQGFGELVRHFVGVVVTNRRLRDLPALIA
                     GFAAYAANKRGELPVIVTTAHRLSDLQRTQLLARLTEAGFGKVLLTERIDASLLGGMV
                     LQAGAKIFDTSLKSRLNRLNYSLKGAA"
     gene            complement(3287..3829)
                     /locus_tag="VEQ16_09935"
     CDS             complement(3287..3829)
                     /locus_tag="VEQ16_09935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2889 domain-containing protein"
                     /protein_id="HYP64199.1"
                     /translation="MPLKRSAPRKLLHLRDIALRGYEREDGLFDIEGHLTDTKTYSLG
                     TPERPGFAAGEPVHNMWLRLTVAPDFEIRAVETEMEGTPYDYCRGAGPNMQRIVGLRI
                     GKGFIKEAMARLGGAEGCTHLRELLQPLSTVAFQTINRGAPKLKSENGPSDPRMNNSC
                     YSYSDGSPVMQATLKAMAEN"
     gene            complement(3944..5041)
                     /locus_tag="VEQ16_09940"
     CDS             complement(3944..5041)
                     /locus_tag="VEQ16_09940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HYP64200.1"
                     /translation="MSEAVFGSFSGGPRRGPVSFFEFWPGWLFYAPVVLFWVLKSIRY
                     GSATLPSLANPLIAAGGICGESKNDILDLAGPQARPWVADYAAVTTLGHVDGADLQVA
                     LAAMAQAGLQFPVVAKPDMSCNGVGVRVVRNEAQLAAYLAAYPRATALQLQALVEYPG
                     EAGIFYIRHPGEARGRITSVTLKYPPEVVGDGRRSVRALIAANERLNAVSHLLLPKLG
                     AKAERVPEPGERVTLVFVGNHCRGSTFKDGMHIVTPALEARIDEIMRDVRDVYFSRID
                     LRYESMEALREGRGFKIIEFNGAASEATNIWDPEMALGRAYREQFFHYGEAFRIGAKI
                     RELGFKPIGLLNLARLWRRQKRLMAAYPAND"
     gene            complement(5038..5622)
                     /locus_tag="VEQ16_09945"
     CDS             complement(5038..5622)
                     /locus_tag="VEQ16_09945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007400372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HYP64201.1"
                     /translation="MHSLSLASLLADAGESWPLQAVIIIGGTFILEDAATLLAAMQVA
                     SGALGLEVALGALYAGIVLGDLGLYLLGFLSGQHAWARRLVPHHRRELGQEWVRTKVF
                     PLVVVSRFVPGLRLPTYTTLGFLRAPLVQFALAAIGATLVWTSGLFFISLRLGVLMLR
                     YLGIWRWAGLAVFLLVIIAVGRLASYAYNKRTNT"
BASE COUNT         1095 a         1913 c         1734 g         1055 t
ORIGIN      
        1 tgcagcgcac cgtgcgctca ccaatctcct gggccacttc cagcaccagc cggcgctcac
       61 caatcttggt ctcaagcgcg ttctgaatga aaggcagcgt gccctcgaac tgcacgtcga
      121 caacggcgcc cagaatttgc gtgacacggc cagtattgtt gcttgccatc tatctgatcc
      181 ctcaaacggc ttcggcgccg gaaataattt cgataagctc tttggtgatg ttcgcctgcc
      241 gggcgcgatt ataattcagc gtcagcttct tgatcatttc gcctgcatta cgcgtggcgc
      301 tgtccatggc ggtcatctgg ctggcataga agccagcatt attctccagc agagcggagt
      361 agatctgcac cgcgagattg cgcggcagca ggcggtcgag gagcgaaccg tcatccggtt
      421 ccacctcgta attatgttcg gtatcattgt cgttcgcggt cggcttcgcg gccgggatga
      481 gcggctgctc ggtcacgcgc tgtaccatga cattgtggaa acggttgaac accatcgtca
      541 ccacgtcata ttcgccggcc ttgaagccgc ggatcagctc atgcgccgcc gcttcggcct
      601 cggcaaagcc gacgctcttc ctgccgacga aattcttggt gccgataatc aggtccttca
      661 aatcgcggcg gagcgtctcg ttccccttgc ggccaagagc gaatatcttc acagccttgc
      721 cctgcgcctg cagcgccttc acctcggcgc gcacggcctt cgccacgttg gcgttgaagg
      781 cgccggcgag gccgcgatcc gccgtaacgg cgacgatcaa atgggtctgg ctcttgccat
      841 tgcccaccag gagcgggttc gcattcgggt tgcccgcttc cgatgcagcg agcgccgcca
      901 gcatctcgcc catgcgcacg gcatagggac gcgctgcctc agcttgcgcc tgggcgcggc
      961 gcagtttcgc cgccgccacc atcttcatgg cactcgtgat cttctgcgtc gatttgacgg
     1021 agttgatccg gttacgcagg gttttcaacg agggcatggt ttcacccgaa cgtgcgcagc
     1081 aggttctcga tgaaggcgat cagcttctgc tccgtctccg gcttgatctg ctggtcggct
     1141 tcgatggcct tgacgatctc aggcgcgctc gcgttgacgc tggaaagcag cgtggcctcg
     1201 aattcctgca ccttgtcgac cgccagccca tccagatagc cgcgcgtgcc agagaagacg
     1261 gagatgacct gctcggccgt ggagagcggc ttgaactgcg gctgcttcag cagctccgtc
     1321 aggcgcgcgc cgcgggccag cagcttctgg gttgccgggt cgaggtcgga ggagaactgc
     1381 gcgaaggccg ccatctcgcg gtactgcgcc aggtcgagct tgatcttgcc cgccacctgc
     1441 ttcatcgcct tgatctgcgc ggcggagccg acgcgcgaca cggacaggcc cacattaatg
     1501 gccggacgca cgcccttgaa gaacagctcc gtctccagga agatctggcc gtcggtgatg
     1561 gagatcacgt tggtcggaat gtaggccgac acgtcgcccg cctgcgtctc gatgactggc
     1621 agcgccgtca acgagcccgc gcccttgtcg tccgacattt tcgcggcgcg ttccagcagg
     1681 cgggagtgta gatagaagac gtcgcccgga taggcttcgc gtcccggcgg acggcgcagc
     1741 agcagcgaca tctggcggta ggcgacggcc tgcttggaga ggtcgtcata gccgatgagg
     1801 gcatgcatgc cgttatcgcg gaagaattcg cccatcgcgc agcccgtgta cggggccaga
     1861 tactgcatcg gcgccggatc ggaagcggtc gccgccacaa cgatggagta ttccagcacg
     1921 ccatattctt ccagcgtgcg caccagctgc gcgaccgtgg agcgcttctg gcccacggcg
     1981 acatagatgc aatagagctt cttgctctca tcgccagtgg cgttgatggc cttctggttg
     2041 atgatggtgt ccacgatcag cgcggtcttg ccggtctggc ggtcgccgat gatcaactcg
     2101 cgctggccgc gcccgatggg caccagcacg tcgatggcct tgatgccggt ggacatcggc
     2161 tcatgcacgg atttacgcgg aatgatgccc ggcgccttgg tctcgacaag gcggcgctcg
     2221 gagaacagca ccggcccctt gccgtcgatc gggttgccca gcgcgtccac gacgcggccg
     2281 agcagaccct tgcccaccgg cacgtcgacg atctgcccgg tacgggtgac attgtcgccc
     2341 tcgcggatgg acttgtcgtc gccgaagata acgacgccga cattgtcggc ttccaggttc
     2401 agcgccatgc ccttgatgcc ggcgccgggg aaatccacca gctcgcccgc ctgcacattg
     2461 gccaggccga agacacgggc aatgccgtca ccaacagaga gaacctggcc ggtctcggcc
     2521 acattggctt cggtgtcgaa atccgcgatc tgacgcttca gaatctcgga gatttcggct
     2581 gggcggatct ccatatcagg cagctccctt gagagaataa ttgagccggt taaggcgtga
     2641 cttcaaactc gtatcaaaaa ttttcgcgcc ggcctgcagc accatgccgc caagcaggct
     2701 ggcatcaatg cgctcggtga gcagcacttt cccaaagccg gcctcggtga ggcgggcgag
     2761 aagctgggtg cgctgcaggt cgctgaggcg gtgcgcggtg gtgacaatca ccggcagctc
     2821 gccgcgcttg ttggcggcat aggcggcaaa gccggcaatc agggcgggca ggtcgcgcag
     2881 gcggcggttg gtcaccacca cgcccacgaa atgccgcacc agctcgccga agccctgcgc
     2941 cttgagcgcc tcatccaata ccgggccggc cttggccagg tcggtgagcg ggttggccag
     3001 gagctgcttc agtgccggcg actcggcaat cagccggccc agcgcctcca tctgcgcgac
     3061 gacatcattg aggacgcccc gctcaaacgc cagcgcataa agggctgccg catagcgcgc
     3121 gggaagtccc gtctcgcctg tgcctgtgat atcggccaat atttttatcc cgtacttgcc
     3181 gtcgttttat gtgactacag ccccgccagg gggctcggcg ggggcagtaa catagggaat
     3241 tcaccacagc aaggccggaa attgctcgtt ttgtcccttg tcaggactaa ttctccgcca
     3301 tggctttcaa ggtggcttgc atcaccgggc tgccgtcgga atagctgtag caactattat
     3361 tcatgcgcgg gtccgacggc ccattctcgc tcttcagctt cggtgcgccg cgattgatgg
     3421 tctggaacgc cacggtggag agcggctgca gcaattcgcg caaatgcgtg cagccttccg
     3481 ccccgccgag ccgcgccatc gcctccttga taaagccctt gccgatgcgc aatcccacga
     3541 tgcgctgcat gttcggcccc gccccccggc aataatcata gggcgtgccc tccatctccg
     3601 tctccacggc acggatttcg aaatccggcg cgacggtcag gcgcagccac atattatgca
     3661 ccggctcccc ggccgcgaaa ccgggccgct cgggcgtacc gagggaatag gtcttcgtat
     3721 cggtcagatg gccctcgata tcgaacagcc catcctcccg ttcatagccg cgcagggcga
     3781 tgtcccgcag atgcagcaat tttcgcggcg ccgaacgctt cagcggcatt ttactcccct
     3841 ccaacccaat tcacccgctt cagggcgtga agattaaatt gaagtgaaag cttttgtact
     3901 gcaacttcag gggcgcacgg ctcccatgtt gcaggcgccc gcctcaatcg ttggccgggt
     3961 acgccgccat cagccgtttc tgccgccgcc agagccgggc gagattgagc agcccgatcg
     4021 gcttgaagcc cagttccctg atcttggcgc cgatcctgaa cgcctcgcca taatggaaaa
     4081 actgctcacg gtaggcccgg cccaacgcca tctccgggtc ccagatattg gtcgcctccg
     4141 aggccgcgcc gttgaattcg atgatcttga acccccgccc ctcgcgcaag gcttccatcg
     4201 attcgtagcg cagatcgatg cgggagaaat acacgtcgcg cacatcgcgc atgatctcat
     4261 cgatccgtgc ctccagcgcc ggggtaacga tatgcatccc atccttgaac gtggagccgc
     4321 ggcaatgatt gccgacgaac acgagcgtca cacgctcgcc cggctccggc acccgctccg
     4381 ccttggcgcc gagcttcggc agcagcaaat gcgagaccgc attcagccgc tcattcgccg
     4441 cgatcagcgc acgcacgctg cggcgcccgt cgccaaccac ctccggcggg tatttcagcg
     4501 tcacggaggt gatgcgcccg cgcgcctcgc cgggatgacg gatatagaaa atccccgcct
     4561 cgcccggata ttccaccagc gcctgcagct gcaacgccgt ggcgcgcgga taggcagcga
     4621 gataagcggc aagctgcgcc tcattgcgca ccacccgcac gccgacgcca ttgcagctca
     4681 tatccggctt ggcgaccacc gggaattgca gcccggcctg cgccatggcg gccagagcca
     4741 cctgcaggtc ggcgccatcg acatggccga gcgtcgtcac cgccgcataa tcggccaccc
     4801 agggccgcgc ctgcggcccc gccaggtcga gaatatcgtt tttggactca ccgcaaatcc
     4861 ccccggccgc gatcagcggg ttggcgagcg acggcagcgt ggcgctgcca tagcggatgg
     4921 atttgagaac ccagaacagc accaccgggg cataaaacaa ccaacctggc cagaattcga
     4981 aaaacgaaac cgggccgcgc cttggaccgc cggagaaaga gccgaagacc gcttcgctca
     5041 tgtattcgtc cttttattgt aggcgtaaga cgcgagccgc ccgaccgcga tgatgacgag
     5101 caggaatacc gcaagcccgg cccagcgcca aatgccgaga taacgcagca tcagcacgcc
     5161 gagtcgcaag gagataaaga acaacccgga cgtccacacc aaagtcgcgc caatggcggc
     5221 cagggcgaac tgcaccagcg gtgcgcgcag gaaccccagc gtcgtatatg taggcaggcg
     5281 cagccccggc acaaagcggc taacgacgac gagggggaag accttcgtgc gcacccattc
     5341 ctgccccagc tcgcgcctgt gatgcggcac cagccgccgc gcccaggcgt gctgcccgga
     5401 gagaaacccg agcagataga gcccgagatc gcccagcaca atgccagcat agagcgcgcc
     5461 cagcgccacc tccagcccca gcgcgccgct cgccacctgc atggcggcca gcaatgtggc
     5521 ggcgtcctcc aagatgaagg tgccgccgat gatgatcacg gcctggaggg gccacgattc
     5581 cccggcatcg gccagcaaac tggcaaggct caaactatgc atgcgccccg ctcatagagc
     5641 gggtttgccc cgacgccaaa tttatccaca aggcgcaact ctttgaaaaa ccgtaaattc
     5701 ggagaagaaa cggttttttc gctgcttttt tacaaaaaag cggcctgtat ccgcgcctta
     5761 ggtgccgctg ttatccgtca gcatggccag atggtcg
//
LOCUS       DASQCV010000638         3730 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2126679, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000638 DASQCV010000000
VERSION     DASQCV010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3730
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2126679"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..241
                     /locus_tag="VEQ16_09950"
     CDS             <1..241
                     /locus_tag="VEQ16_09950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009542738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycolate oxidase iron-sulfur subunit"
                     /protein_id="HYP64202.1"
                     /translation="GTYNILQPEIAGQLRDHKVANIESTAPEMIAAGNIGCIVQIGGG
                     TQIPIVHTVELLDWATGGPKPEALQKREAQRTATP"
     gene            complement(231..1742)
                     /gene="glpK"
                     /locus_tag="VEQ16_09955"
     CDS             complement(231..1742)
                     /gene="glpK"
                     /locus_tag="VEQ16_09955"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016292161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004370 - glycerol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HYP64203.1"
                     /translation="MTRYIGAIDQGTTSSRFIVFDERGNAISAAQKEHRQIYPQPGWV
                     EHDPMELLTNTQEVVGAALARANLTMEDLAAVGITNQRETTLLWDKATGRPLCNALVW
                     MDTRTDQLVHRFMHEGGQDRFRTRTGLPLATYFSGLKLLWILETIPGARAKAEAGEAL
                     FGTVDSWLAWNLTGGPQGGLHITDVTNASRTMLLNLESCAWDEDMLRVFSIPRACLPR
                     IVPSSAVYGEIVTNPLRGTLLAGMLGDQQAALVGQTCFAPGEAKNTYGTGSFLLMNTG
                     TVPVQSKAGLLTTLAYQFGEEKPHYALEGAIAITGALVQWLRDNLRLLDTAAQIEPLA
                     ASVPDNGDVYIVPAFSGLYAPYWKDDARGVIAGLTRFANRAHLARAALEATAYQVRDV
                     VEAMQEDSGISLAALKTDGGMVANHLLMQFQADILDVPVLRPKMVETTALGAAHAAGL
                     AVGYWRSMEELRQFWGVDKVWRPDMRPERRAHYYRSWKKAVQRSFAWVEDPKG"
     gene            complement(1878..3152)
                     /locus_tag="VEQ16_09960"
     CDS             complement(1878..3152)
                     /locus_tag="VEQ16_09960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007002042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HYP64204.1"
                     /translation="MARIFGIDFGTTNSVVAELSVDGSVTSRVFPQDGTLHDVFRTVL
                     CFWHEQGRGRAGLRHEAGPAAIETYLDDPLESRLIMSMKSYLAQRSFTQTNIFGRVFT
                     LEEMIALFLRALLGDEKNVRIVAGRPVRFAGEFADDDFGEARLRAAFAAAGLPDIETA
                     YEPEAAGYRFIRALDRPANVLVGDFGGGTSDFSVLRFTPGASVPIRTLANTGVGVAGD
                     SFDYRIIDNVVSPLLGKGDLYRVPMGSDMPVPIEYFTSFAHWHRLSLMRSPRVLRDIE
                     EVARMAHHPRKLRNLISLIKDESGYHLYQAVSRVKAELSHADNAKLTFEHEDFTLDQE
                     ISRTAFEGWITPELTKLEASVEAVLTEAQMLPEQIDRVFLTGGTSFVPAVRQLFLDRF
                     GAEKLMGGGEFVSVAEGLALIGRDRMVKAELQ"
     gene            3283..>3730
                     /locus_tag="VEQ16_09965"
     CDS             3283..>3730
                     /locus_tag="VEQ16_09965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004449339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP64205.1"
                     /translation="MIRLDNISKQNGSRLIFIEASAALQKGEKIGLVGPNGAGKSTLF
                     RLITGLEQPDEGHILIDKGVSVGLFSQDVGEMEGRSAVAEVMDGAGPVSAVAAELTAL
                     ETAMADPEKFDELDAILERFGEVQARFEELGGYALDAKAREVLHGLG"
BASE COUNT          717 a         1182 c         1144 g          687 t
ORIGIN      
        1 cggaacctac aatattctcc agccggaaat cgctgggcag ttgcgtgacc acaaagtggc
       61 caacatagaa agcaccgcac ccgagatgat cgccgctggc aatatcggct gcatcgtgca
      121 gatcggcggt ggaacgcaaa tccccatagt ccatacggtt gaattgctcg actgggcgac
      181 aggtggtccc aaacccgaag cgctgcaaaa acgcgaggcc cagcgaacgg ctacccctta
      241 gggtcttcca cccaggcgaa tgagcgttgc accgccttct tccaggatct gtagtaatgc
      301 gcgcgccgtt caggccgcat atcggggcgc cagaccttgt ccacgcccca gaactggcgc
      361 aactcctcca tgctgcgcca atatcccacc gccagtcccg cggcgtgggc tgcgccgagc
      421 gccgttgttt ccaccatttt cggccgcagt accggcacat ccagaatatc ggcctggaat
      481 tgcatcagca gatgattggc caccatgccg ccgtcggttt tcagggcggc aaggctgatg
      541 ccgctatcct cttgcatcgc ttccacaacg tcgcgcacct ggtatgccgt cgcttccagc
      601 gccgcccgcg ccagatgcgc cctgttggca aaacgcgtca gcccggcgat cacgccgcgc
      661 gcatcatcct tccaataagg cgcatacagg ccggagaagg cgggaacaat atagacatcg
      721 ccattatccg gtacgctcgc cgccaagggc tcgatttgcg ctgccgtgtc cagcagtctc
      781 agattatccc gcagccattg caccagcgcg ccggtgatgg cgatcgcccc ttccagcgca
      841 taatgcggct tttcctcgcc gaactgatag gcgagggtgg tcagcagtcc agccttagac
      901 tgcaccggca ccgtgccggt attcatcagc agaaaagagc cggtgccata agtattcttg
      961 gcctcgccgg gggcgaagca ggtctgtccg accagagccg cctgctggtc gcccagcatc
     1021 cccgcgagca gcgtgccacg cagcgggttg gtcacaatct ccccatacac cgcggaagag
     1081 ggcacgatgc gcggcaggca ggcgcgcggg atggaaaaga cgcgcagcat atcctcatcc
     1141 caagcgcagc tttccaggtt gagcagcatg gtgcggctgg cgttggtcac atccgttata
     1201 tgcaggccgc cttgcgggcc gcctgtcaga ttccaggcca gccagctatc cacggtgcca
     1261 aacagcgcct cgccggcttc agcttttgcg cgcgcgccgg ggatggtttc tagaatccag
     1321 agcagtttca agccagagaa ataggtcgca agcggcagcc cggttctggt gcggaagcga
     1381 tcctgtccgc cctcatgcat gaagcggtgg accagctggt cggtgcgcgt gtccatccag
     1441 acaagtgcgt tgcagagcgg ccggcccgtt gccttgtccc agagcaatgt cgtttcgcgc
     1501 tggttggtga tgcccacggc ggccagatcc tccatggtga ggttagcccg cgccagcgca
     1561 gctcctacca cctcctgtgt gttggtgagc agctccatcg gatcatgctc cacccagcca
     1621 ggttgggggt agatctgccg gtgctccttc tgcgcggcag agatcgcgtt gccgcgctcg
     1681 tcgaatacga tgaagcgcga gctggtcgtg ccctggtcga tggcgccgat atagcgggtc
     1741 atttttctgc tcctccctgc agtaggctgt acagcagtgc cccgttgtgt cggaggtagg
     1801 tccgattaag gcagccggtg tattatggcc ccagtctgcc acagatgggt ggtagtgact
     1861 tcacaaagct tcttttttta ttgaagctca gcctttacca tacggtcacg tccaatcagc
     1921 gccagtccct cggcaaccga gacgaactcg ccgccgccca tgagtttttc cgcgccgaaa
     1981 cggtcgagaa aaagctgccg taccgccggc acgaaggatg tgccgccggt taggaatacg
     2041 cggtcgatct gctcaggcag catctgcgcc tcggtcagca ccgcctccac actcgcctcc
     2101 agtttcgtga gttccggggt gatccagcct tcgaacgcgg tacggctaat ctcctggtcc
     2161 agcgtgaaat cttcgtgttc gaacgtgagt ttcgcgttgt ccgcgtgtga aagctcggcc
     2221 ttcacccggc tcaccgcttg gtagagatga tagccgctct catccttgat caggctgatc
     2281 agattgcgca gtttccgtgg atgatgcgcc atgcgcgcca cttcctcgat atcgcgcagc
     2341 acacgcgggc tgcgcatcaa cgacagccgg tgccaatgcg cgaaactggt gaaatattcg
     2401 atgggcaccg gcatgtcgct gcccatcggc acacggtaga gatcgccctt gcccagcagc
     2461 ggggacacaa cattatcgat gatccggtaa tcgaaactgt cgccggcgac gcctacgccg
     2521 gtattggcca gcgtgcggat gggcacagac gcgccgggcg tgaagcgcag cactgagaaa
     2581 tctgacgtgc cgccgccgaa atctcccacc agcacattcg ccggccggtc gagtgcgcgg
     2641 ataaaacggt agccggccgc ctccggctca taggcggttt cgatgtccgg cagcccggcg
     2701 gcggcgaagg cggcacgcag ccgcgcctcg ccgaaatcat catcggcgaa ctccccggca
     2761 aagcgcaccg gccgcccggc gacgatacgg acatttttct catccccgag caaggcgcga
     2821 aggaacaagg cgatcatctc ctccagtgtg aaaacccggc cgaaaatatt ggtctgggta
     2881 aaactgcgct gcgccagata actcttcatg gacatgatca gccggctctc cagcggatcg
     2941 tccaggtagg tctcaatcgc tgctggcccg gcctcgtggc gcagcccggc ccgcccccgc
     3001 ccctgctcgt gccagaagca gagcacggtg cggaatacgt catgcagcgt gccgtcctgg
     3061 gggaagaccc ggctggtcac gctgccatcc acgctcagct cggccaccac ggaattggtg
     3121 gtgccgaaat cgatgccgaa aatgcgtgcc atgaaccatc tcttgggggg attgcgcgga
     3181 gggagcaggc ttcaacccca tctggcggtc cggcgcaagg gtttgcggca tggccatatt
     3241 ggccttaaga gcctgccgcc gctaaccgcc cctcgaggaa ccatgattcg cctggacaat
     3301 atcagcaagc agaatggctc gcgcctgatc ttcatcgagg cttcggccgc cttgcagaaa
     3361 ggcgagaaaa tcggcctggt cgggcccaac ggggcgggca aatcgacctt gttcaggctg
     3421 atcaccgggc tggagcagcc tgatgaaggc catatcctca tcgataaggg ggtcagcgtc
     3481 gggctgttca gccaggatgt gggcgagatg gaggggcgca gcgccgtggc cgaggtgatg
     3541 gacggcgccg ggccggtaag cgctgtcgcg gccgagctga cggcgctgga aaccgccatg
     3601 gccgacccgg agaaattcga cgagctggat gccatactgg agcgcttcgg cgaggtgcag
     3661 gcgcgcttcg aggagctggg cggctatgcg ctggacgcaa aggcgcgcga ggtgctgcac
     3721 gggctcggct
//
LOCUS       DASQCV010000639         3030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1795672, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000639 DASQCV010000000
VERSION     DASQCV010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3030
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1795672"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..302
                     /locus_tag="VEQ16_09970"
     CDS             <1..302
                     /locus_tag="VEQ16_09970"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HYP64206.1"
                     /translation="HIRPGESLGAIGLITGMPYAATAIAETRMTVFKLDRESLAAAIE
                     AEPRLAHGLEGLARRSQAALRRDAATFADTKHAQPDMFLTGLRNFVNLLKSRESP"
     gene            422..631
                     /locus_tag="VEQ16_09975"
     CDS             422..631
                     /locus_tag="VEQ16_09975"
                     /inference="COORDINATES: protein motif:HMM:NF018464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015716 - organic phosphonate transport
                     [Evidence IEA];
                     GO_process: GO:0019634 - organic phosphonate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnG"
                     /protein_id="HYP64207.1"
                     /translation="MFEALYSRPVWLGLLARASGAEIAECLRAAPALPGFTRLRRPES
                     GMSMVRGRAGGGGGCCGRTAAGARL"
     gene            576..959
                     /locus_tag="VEQ16_09980"
     CDS             576..959
                     /locus_tag="VEQ16_09980"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP64208.1"
                     /translation="MRVAAEDVVAAPLLERGFDNDDARVRARDMLGRLGVAPRLHKLP
                     PVTFSGGEQQRVNLARAFACDWPVLLLDEPTASLDAANRDIVIALMREAKTRGTALVG
                     IFHDVAVRDAVADEMLVLEPVREEI"
     gene            956..2077
                     /locus_tag="VEQ16_09985"
     CDS             956..2077
                     /locus_tag="VEQ16_09985"
                     /EC_number="3.6.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0019700 - organic phosphonate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-ribose 1-methylphosphonate
                     5-triphosphate diphosphatase"
                     /protein_id="HYP64209.1"
                     /translation="MTILSNARMVLPDGVAHGALAIEDGVIASLTPAGEGLDLEGDYL
                     IPGLIDLHTDNLERQAQPRSSARWPSRSALLIHDAQCAVAGITTVFDALCLGDIGFEK
                     ERNKTFEHGYADLAALAALGALKTEHFLHLRCELPAPEMRPMLEGAIADQLVRLLSIM
                     DHSPGFGGQYIDIERYRRMRQAEGRSAAEVDDVIIELHENRDAHYEANRAWVLAEAAL
                     HGIPVASHDDRTEEEVARNAADGITISEFPVSLEAAKAARARGQKTIAGAPNIVRGGS
                     HSGNVSVLALIREGLLDALASDYVPAAMLEAAFVAANAGALPLHEAVALVSSGPAEIA
                     GLTDRGRIEAGLRADLVQVRLYGGHPVVRAVWRGGERIG"
     gene            2070..2735
                     /locus_tag="VEQ16_09990"
     CDS             2070..2735
                     /locus_tag="VEQ16_09990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1045 domain-containing protein"
                     /protein_id="HYP64210.1"
                     /translation="MAEPYRAAIYYVPAVSDPLWQAGCAWLGRDPETGVEMPRPAVPE
                     LAKLSADPGRYGFHATLKAPMQLRYGFSAFLEGVSEFASRQLAFALPPLVVRNIHGFL
                     ALCLGQDCQPMRELAAACVTELDGHRLVEAAEKQTARAAGRPARQREYIFRWGYPLVL
                     EEFRFHMTLTDKLADNPLLPAAEQYFALVAALPRQVNGLAVFVEDRKGAPFRLARRLR
                     FGP"
     gene            2732..>3030
                     /locus_tag="VEQ16_09995"
     CDS             2732..>3030
                     /locus_tag="VEQ16_09995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007435588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism
                     protein/1,5-bisphosphokinase (PRPP-forming) PhnN"
                     /protein_id="HYP64211.1"
                     /translation="MSGLKCGWLVLVVGPSGAGKDTVLRYAQARLAKERGIVFARRAI
                     TRPAEESEEHEPLTLSAFLDRRFALSWAAHGLHYGIPASIEPVLAAGGVVVANVSR"
BASE COUNT          455 a          853 c         1113 g          609 t
ORIGIN      
        1 ggcatataag gccgggggag agcctgggcg ccatcgggct gattacaggc atgccctatg
       61 cggcgacggc gattgccgag accaggatga cggttttcaa gctggaccgg gagtcgctgg
      121 cggcggccat cgaggccgag ccgcgtctgg cgcacgggct ggagggactg gccaggcgca
      181 gccaggcggc gttgcgccgg gatgccgcca ccttcgccga tacgaaacat gcccaaccgg
      241 acatgttcct caccggcctg cgcaatttcg tgaatctgct gaaaagccgg gaaagtccat
      301 gattggcggc acgctgtcat gagggattcg cgcggctgac ataaaagctt ctccaaactt
      361 atctagatat ctctgggtag cgcggtttac gcggctgcgc gttgaatata gatgtctaga
      421 tatgtttgag gccctttaca gccgtccggt ctggcttggt ctgcttgccc gcgccagtgg
      481 cgccgagatc gcggaatgcc tgcgggcggc gcccgcgctg cctggattta cccggttgcg
      541 caggccggag agcggcatgt ccatggtgcg cggccgtgcg ggtggcggcg gaggatgttg
      601 tggccgcacc gctgctggag cgcggctttg ataatgatga cgcgcgggtg cgggcgcggg
      661 acatgcttgg ccgcctcggc gtggcgccgc gcctgcataa actgccgccc gtcacgtttt
      721 ccggcggtga gcagcagcgc gtgaatctgg cgcgcgcctt tgcctgcgat tggcctgtgc
      781 tgctgctgga tgagccgacc gcctcgctcg atgccgcgaa ccgcgatatc gtcatcgcgc
      841 tgatgcgtga ggcgaaaacg cgcggcacgg ctctggtggg gatttttcac gatgttgccg
      901 ttcgggatgc ggtggcggac gaaatgctgg tgcttgaacc ggtcagggaa gagatatgac
      961 gatactcagc aatgcgcgaa tggttttgcc ggatggcgtg gcgcatgggg cgcttgccat
     1021 cgaggacggg gtgattgcca gccttacgcc tgcgggcgag gggctcgatc tggaagggga
     1081 ttatctgatc cctgggctga ttgatctgca cacggataat ctggagcgcc aggcgcagcc
     1141 gcgctccagt gcgcgctggc cttcgcgctc ggcgctgctg atccatgatg cgcaatgtgc
     1201 cgttgccggg attaccacgg tgttcgatgc gctgtgcctg ggcgatatcg gcttcgagaa
     1261 ggagcgcaac aagacgtttg agcatggcta tgccgatctt gcggcgctcg ccgcgctggg
     1321 ggcgctgaag accgaacatt ttctgcatct gcgctgcgag ctgcctgcgc cggagatgcg
     1381 gcccatgctg gaaggcgcca ttgccgacca gctggtgcgg ctgctttcca ttatggacca
     1441 cagcccgggc tttggcgggc aatatatcga tatcgaacgc tatcgccgca tgcgccaggc
     1501 ggagggccgg tctgccgccg aggtggatga tgtgatcatc gagctgcatg aaaaccgtga
     1561 tgcgcattat gaggcgaacc gtgcctgggt gctggccgag gcggcgcttc atgggattcc
     1621 cgtggcctcg catgatgacc gcacggaaga ggaagtggcg cgcaacgcgg cggatggcat
     1681 taccatttcg gaattccccg tctcgctgga agccgcaaag gcggcgcggg cgcgggggca
     1741 gaagaccatc gcaggggcgc cgaatattgt gcgcgggggc tcgcattctg gcaatgtctc
     1801 ggtgcttgcg ttgatccgcg aagggctact ggatgcgctg gcttcggact atgtgcccgc
     1861 cgcgatgctg gaggcggcct tcgttgcggc caatgcgggg gcgctgccct tgcatgaggc
     1921 ggtggcgctc gtaagctccg gcccggcgga gattgcgggg ttgacggatc gcggacggat
     1981 tgaggcgggg ctgcgggcgg atctggtgca ggttcggctc tatggcgggc atccggtggt
     2041 gcgcgcggtg tggcgcgggg gcgagcgcat tggctgagcc gtatcgcgcc gcgatctatt
     2101 acgtcccggc ggtgtccgat ccgctctggc aggcgggttg cgcctggctg gggcgggatc
     2161 cggaaaccgg tgtggagatg ccgcgcccgg cggtgccgga gttggcgaag ctgagcgcgg
     2221 atccaggccg ctatgggttc catgccacat tgaaggcgcc gatgcagctc cgatatggtt
     2281 tttcggcatt cctcgagggc gtttccgaat ttgcctcgcg gcagcttgct tttgcgctgc
     2341 cgcctttggt tgtgcgcaac attcacggct tcctggcctt gtgcctgggg caggattgcc
     2401 agcccatgcg ggaattggcg gccgcctgcg tgacagaatt ggatggccac cgcctggtcg
     2461 aagcggcgga aaaacagacg gcccgtgccg ccggacgtcc ggcgcggcag cgggagtata
     2521 tttttcgctg gggctatccg ctggtgctgg aggaattccg tttccacatg acgctgacgg
     2581 acaagctggc cgataatcct cttctgccgg cggctgagca atattttgcg cttgtcgccg
     2641 ctttgccccg ccaagtgaat ggtctggccg tgtttgtgga ggacaggaag ggggcgccgt
     2701 tccgcctcgc gcggcgtctg cggttcggcc catgagcggg cttaagtgcg ggtggctggt
     2761 cctcgtcgtt ggaccttccg gggcggggaa ggatacggtt ttgcgctatg cccaggcgcg
     2821 gttggccaag gagcgcggca tcgtgtttgc ccggcgtgcc attacgcgcc cggcggagga
     2881 gagcgaggag catgagccgc tcactttgtc cgcctttctg gaccggcgct ttgcgctgag
     2941 ctgggcggcg catgggctgc attacggtat tcccgccagc atagagcccg tgctggcggc
     3001 gggcggggtg gttgtcgcca atgtctcgcg
//
LOCUS       DASQCV010000640         1896 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_798529, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000640 DASQCV010000000
VERSION     DASQCV010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1896
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_798529"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..290
                     /locus_tag="VEQ16_10000"
     CDS             <1..290
                     /locus_tag="VEQ16_10000"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP64212.1"
                     /translation="RVEGLGMVTLEAASAGVPAVGSNLGGIRETIADGETGFLVPERD
                     SEALAARMGELLANEPLRRQMGEAARRRVEREFDITRQTARLEEMYDEVRA"
     gene            287..1027
                     /locus_tag="VEQ16_10005"
     CDS             287..1027
                     /locus_tag="VEQ16_10005"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HYP64213.1"
                     /translation="MRAVVVAHPDDEALWLSSALVAAQRVVFCFGDQFGDAGQKSAAR
                     RRAVAALDLPGLVSLELVESGTRKQVDWAHTHFTAAGIKISDPAGQARYEANFAALLD
                     GLRPLLAGCTEVYTHNPWGEYGHPEHVQVYRAVAALQAELGYKIWFSNYVSRLSWRLA
                     RHAGAEPCWADRVQTRPNGTLARRLFFTYLRHGAWTWPLAHRWPKREFFFSQPANSAE
                     WRPLTGERLLDVQRLRLWRLGNAELVLI"
     gene            complement(1024..>1896)
                     /locus_tag="VEQ16_10010"
     CDS             complement(1024..>1896)
                     /locus_tag="VEQ16_10010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HYP64214.1"
                     /translation="LIASPFRPRLRFHFPDIAPLLHFGLRSASANLFEQVFKNIDFLL
                     VGWFYGAAPLAVYRVAFDVAMEPAMAIGTIINRTAMPVFARAAAVPGELADALLWSLR
                     RLTVLNAPLMVGLILLAGPLMTLLHDAQGHSYQAAAVPLQILACAAILRITSQLITPV
                     LLATGQPGKAASVSAVTLGLLSTGIFAAGLYFPAHSGIVAVACVWLAAYPPLLAWGAF
                     YLSRHWQIQPVTLLRPFWFPAVGVASLLLLAFAGHALIRQPGPAVQIAIALVATALAY
                     AGLFWHTRRTQLAG"
BASE COUNT          357 a          501 c          740 g          298 t
ORIGIN      
        1 gacgggtcga ggggctgggc atggtgacat tggaggcggc ttctgccggc gtgcctgcag
       61 tgggctccaa tctgggtggc atacgagaga ccatcgccga tggggaaacc ggttttctgg
      121 ttcccgagcg cgactctgaa gctctagcgg cgcgcatggg ggaattactg gcgaatgaac
      181 cattacgccg tcagatgggc gaggcagcgc ggcggcgcgt ggaacgggag ttcgatatta
      241 cgcggcagac ggcgcggctt gaggagatgt atgatgaggt gcgggcgtga gggcggtggt
      301 cgtcgcgcat ccggatgatg aggctttatg gctgagttcc gccctggtgg cggcgcagcg
      361 cgtggtattt tgtttcggcg accagttcgg cgatgcgggc cagaaatcgg ccgcgcggcg
      421 gcgggcggtg gcggcgctgg atctgccggg gctggtgagc ctggagctgg tggagagcgg
      481 tacacgcaag caagtggatt gggcgcatac gcattttacc gcggcgggca tcaaaatttc
      541 cgatcctgcc ggacaggcac gctacgaggc gaattttgcc gcgttgctgg atgggctgcg
      601 gcctcttctg gcgggatgca cggaggttta tacgcataat ccctgggggg agtatgggca
      661 ccctgagcat gtgcaggtct atcgggccgt ggccgcgctg caggcagaac tgggctataa
      721 gatctggttt tccaattatg tgtcccgcct gagctggcgg ctggcgcgac acgccggagc
      781 agagccgtgc tgggcggacc gggtgcagac gaggccgaac gggactttgg cgcggcggct
      841 tttcttcacc tatctgcgcc atggcgcctg gacctggccg ctggcacatc gctggccaaa
      901 acgggagttt ttcttctccc agccggcgaa tagcgcagag tggcggccgc tgacgggcga
      961 gcggctgctg gatgtgcagc gcttgcggct atggcggctg gggaacgcgg agctggtgct
     1021 gatctagcca gccagctggg tacggcgcgt gtgccaaaac aagccagcat aggccagcgc
     1081 ggtggccacc agggcaatgg cgatctgcac ggccggacct ggctggcgga tgagggcgtg
     1141 accggcgaag gccagcagga gcagcgatgc cacgccgacg gcggggaacc aaaaaggacg
     1201 cagcagcgtg acgggctgga tttgccagtg ccggcttagg tagaacgccc cccaggctag
     1261 gagcggcgga taggcggcga gccagacaca ggcgaccgcg acgatgccgg aatgggccgg
     1321 gaaatagagc ccggcggcga aaatgccggt gcttaggagg ccaagtgtga cggcggagac
     1381 ggaagccgcc ttgccgggtt ggccagtggc gagcagcacc ggcgtgatga gctgcgaagt
     1441 gatgcgcaag atggcagcgc aagccagaat ctgcagcggc acggcggcag cctggtagct
     1501 atggccctgg gcgtcatgca gcagcgtcat caacgggccg gccaggagga tgagtccgac
     1561 catcagcggg gcgttgagca ctgttaggcg gcgcagggac cagagcagcg catcagcgag
     1621 ctcgccgggg acggcggcgg cgcgggcgaa taccggcatc gcggtacggt tgatgatcgt
     1681 gccgatagcc atggcgggtt ccatggcgac gtcgaaggca acacgataga cggcgagcgg
     1741 ggcggcgccg tagaaccagc caaccagcag gaaatcgata ttcttgaaaa cctgctcgaa
     1801 gagattggcc gaggcggagc gcaggccgaa atggagcagc ggcgcgatgt cggggaaatg
     1861 gaagcgcagg cgcggacgga acgggctggc aatgag
//
LOCUS       DASQCV010000641         5034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_469334, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000641 DASQCV010000000
VERSION     DASQCV010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5034
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469334"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..242)
                     /locus_tag="VEQ16_10015"
     CDS             complement(<1..242)
                     /locus_tag="VEQ16_10015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64215.1"
                     /translation="MNPIHGEPRDRFNSVYTSTKVNGIDFVELVAGHADQLRVHFINA
                     VQPLETLQAAITGGDSIPSVAVAASTAADWSQDSAGR"
     gene            complement(239..625)
                     /locus_tag="VEQ16_10020"
     CDS             complement(239..625)
                     /locus_tag="VEQ16_10020"
                     /inference="COORDINATES: protein motif:HMM:NF016829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HYP64216.1"
                     /translation="MTRNDIAFPFRIAAGSGQAAQASYQDHVDQLIRQVLLTDPGERV
                     NLPQFGAGLRRLLFAPISSSLAATTTIAVTQALTKWIPTQIKVLGVTVTTPLQNAALP
                     DGTVQITVQYQLVETRAPRQTVVLVS"
     gene            complement(622..954)
                     /locus_tag="VEQ16_10025"
     CDS             complement(622..954)
                     /locus_tag="VEQ16_10025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64217.1"
                     /translation="MSPPLLTAASQMMCPHGGTVTAAPSATKAVIDAPVLTMNDSFVV
                     AGCAFTLPGPVASPCVSVQWSAPSAHVSHGGAPALTAVSAGLCLAATQAPQGTVIVST
                     TQPKVQGS"
     gene            complement(951..1463)
                     /locus_tag="VEQ16_10030"
     CDS             complement(951..1463)
                     /locus_tag="VEQ16_10030"
                     /inference="COORDINATES: protein motif:HMM:NF016595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HYP64218.1"
                     /translation="MSESAQLQEILDRLRNRFYGKYRGTVVDVDASNMAVKATVPAVL
                     GLTPTGWCLPCVPYAGPQVGFCMLPDLGANVWIEFEGGDVSKPIWAGCFWLASDIPGS
                     ADAAVKSIITQAGTLAFDTNQSSITATGAQSQTVVLDAQGVTATAGSGSVAVASSGVT
                     INSGAMVITP"
     gene            complement(1460..2581)
                     /locus_tag="VEQ16_10035"
     CDS             complement(1460..2581)
                     /locus_tag="VEQ16_10035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64219.1"
                     /translation="MSGKFDIYVSGSPATDLSTTLAALEVEENLDMPGAFELTLPVKR
                     GTDSDIDTVSDPRLAPFSNIAVVAQGADGQAQCLIDGYVLSHKLHLDTGVVASTLKVW
                     GQDASWLMNVAETVKEWPNLTDGAIANSIFGTYGFTPDPGNLDNDSSAYTEQPHSLMQ
                     RTTDAQLLAMLARRSGKYARVFCTDTPGQRTGWFGMPDLSGNAVITLTLNDNAAATVD
                     AIDVEWDVMRPTSVSAYAALLSAAGPAGSDSNTDTGLSPLSTQDLPSFAGQTVSALLT
                     TVVDDAGALASRATAVLRDAQWFVNCRGVADAGRVGGILRVGSIVAIAAAGAMYSGNY
                     LVWSVRHHITAEAHKMEFRLVSNALGTPPAAGPLPGAPA"
     gene            complement(2586..2867)
                     /locus_tag="VEQ16_10040"
     CDS             complement(2586..2867)
                     /locus_tag="VEQ16_10040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64220.1"
                     /translation="MFSADSRYYKQSLYTATTASGQQVPAVTLPLPPQSVPLAGFYQR
                     PAAERLDLVAARFLNDPTWFWKLCDANNSPVPDGLAVQKLIGIPSGYGK"
     gene            complement(2879..3643)
                     /locus_tag="VEQ16_10045"
     CDS             complement(2879..3643)
                     /locus_tag="VEQ16_10045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64221.1"
                     /translation="MPGSYLRGAFVSFTETFPLPIPNVVIFQYNPETMTHTWTPAQTG
                     GAAATGAAAHAPASAAGGSTAQPADGASNPLAVTGPPGEAFSFTLMLDANDMIADGNA
                     ASVGLAKVSGVYTRLAALEMLLFPTDNSGGGLIGSISSALGITGGSTGPSTPIPAQQL
                     PTVLFIWGPGRILPVKLTSLTTTEKLFDNVLLNPIHAEVSVGLKVLTPQELQYVDGPL
                     GDLANTAYSVSKTLREALALANLANGVGDIIGMLPI"
     gene            complement(3647..3913)
                     /locus_tag="VEQ16_10050"
     CDS             complement(3647..3913)
                     /locus_tag="VEQ16_10050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64222.1"
                     /translation="MSGTAQKQALASIHIDRLTLEIPGFDPAQAGQLSRLVASHLAHD
                     TGWTGDMTLPRVAVTLSPAETSVEQIAWKIARAIFRARPPEEGR"
     gene            complement(3910..>5034)
                     /locus_tag="VEQ16_10055"
     CDS             complement(3910..>5034)
                     /locus_tag="VEQ16_10055"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP64223.1"
                     /translation="WRHGEQLATSGPAPDMLHGLSTLRAITPDAITRADALPVRLPKP
                     AIPARLAVWQALSTAPPPPQITSQRLMPGEIALLATAAPQGPAAMRLAMRRIAPPDSE
                     ILSRLDCPYDWEDLVVPPDIAGQLRDFAAQIELRWDVYENWGFGRLTHLGEGIAALFA
                     GPSGTGKTMAAQVMARKLDLDLYRVDLAGVINKYVGETEKRLRDVFAFAERAGVLLFF
                     DEADALFGSRMQVKDSHDRFANIEIDYLLQRIERFDGITILATNRKSEIDTAFLRRLR
                     FVVDFVPPGPAQRLAIWRKALPETAPDGTKLLDDIDWPLLAERMSLTGADIKSAALSA
                     AFLARREDGRIGMRHVLAAVQREMAKRGQVLRLRPAEAAQ"
BASE COUNT          845 a         1608 c         1670 g          911 t
ORIGIN      
        1 cgccccgcgc tgtcctgcga ccagtcggcc gccgtgcttg cggctaccgc gacggaaggg
       61 atggaatcgc ccccggtgat ggccgcctgc agcgtttcga gcggctgcac agcattgatg
      121 aaatgcaccc gaagctgatc cgcatgaccc gcaaccagct cgacgaaatc gatgccgttg
      181 accttcgtgc tggtatagac actgttgaac cggtcgcgcg gttcgccatg aatcgggttc
      241 atgacacgag caccacggtc tggcgcggag cccgggtttc aaccagctgg tattgcaccg
      301 tgatctgcac cgtaccgtcc ggcagggccg cgttctgcag cggtgtcgtc acggtcacac
      361 cgagcacctt gatctgcgtc gggatccact tcgtcagcgc ctgagtgacg gcaatggtgg
      421 tggtggcggc gagtgagctg ctgatagggg cgaacagcag ccggcgcagc ccggcgccga
      481 attgcggcag gttgacgcgc tctcccgggt cggtcagcaa cacctggcgg atcagctggt
      541 cgacatggtc ctgatagctc gcctgggccg cctggccgga gccggcggca atccgaaacg
      601 gaaaagcaat gtcattgcgg gtcatgagcc ctgcactttc ggctgggtgg tggagacgat
      661 gacagtgccc tgcggcgctt gtgtcgcggc caggcataat ccggcgctca ccgcggtcag
      721 ggccggcgcg ccaccatggc tgacatgcgc ggaaggggct gaccattgca cgctcacaca
      781 agggcttgcc actgggcccg gcagggtgaa ggcgcagccc gcgaccacga aactgtcgtt
      841 catggtcagc accggtgcgt cgatcacggc tttcgtggca cttggcgccg cggtcaccgt
      901 gccgccatgc gggcacatca tctggctggc ggcggtgagg aggggcgggc tcatggcgtg
      961 atcaccatcg cgccgctatt gatggtcacc ccagatgacg ccaccgcaac gctgcccgat
     1021 ccggcggtgg cggtcacgcc ctgggcgtcc agcaccacgg tctgactttg cgcgccagtc
     1081 gcggtgatgc tgctctgatt ggtgtcgaaa gcgagcgtac cggcctgggt gatgatggat
     1141 ttgacggcgg cgtcggcgct gcctggaata tcgctcgcga gccagaaaca gccggcccag
     1201 atgggtttcg acacatcgcc gccctcgaac tcgatccaga cattggcgcc gagatcgggc
     1261 agcatgcaga acccgacctg cggcccggcg tagggtacgc atggcaggca ccaacctgtg
     1321 ggcgtcagcc ccagcacggc cggcacagtc gccttcaccg ccatgttgct ggcatcaaca
     1381 tccaccactg tgccgcgata tttgccgtag aaacggttgc ggaggcgatc cagaatttcc
     1441 tgaagctggg cgctctcgct catgccggcg ctcctggcag gggcccggca gcaggtggcg
     1501 tgccgagggc gttgctgacg aggcggaatt ccattttatg cgcctcggca gtgatgtgat
     1561 ggcgcacgct ccagaccaga taattgccgg aatacatcgc cccggcggcg gcgatggcaa
     1621 cgatgctgcc aacgcgcaag ataccgccga cgcgcccggc atccgccaca ccgcggcagt
     1681 tcacgaacca ttgtgcatcg cgcaacaccg ctgtggcgcg gcttgccagc gcgcccgcat
     1741 cgtccaccac cgtcgtcagc agcgcgctca ccgtctgccc ggcaaagctt ggcaggtcct
     1801 gtgtgctgag cggcgacagt ccggtatcgg tattgctgtc gctgccggcg gggccggcag
     1861 cgctcaggag cgcggcatag gccgaaacgg aggtcggtcg catcacatcc cattccacat
     1921 cgatcgcatc gacggtcgcc gccgcattgt cattcagcgt caaggtgatc acggcgttgc
     1981 cggaaagatc aggcatgccg aaccatcccg tgcgttggcc cggtgtgtcc gtgcagaaga
     2041 cgcgcgcata tttgccgctg cgccgtgcca gcatggcgag cagttgggcg tcggtggtgc
     2101 gctgcatcag actgtgtggc tgttccgtat aggcggagct gtcattgtcg agattgcccg
     2161 gatcgggggt gaagccgtag gtgccgaata tgctgttggc gatggcgcca tcggtcaggt
     2221 tcggccactc cttcacagtc tccgcgacgt tcatcagcca ggaggcatcc tgcccccata
     2281 ctttcagcgt gctcgccacc acgccggtgt cgagatgcag tttatgcgaa agcacatagc
     2341 cgtcgatcag gcattgcgcc tgcccgtccg cgccttgtgc taccacggca atgttggaga
     2401 agggggcgag gcgcggatcg ctcaccgtat cgatgtcgga atccgtgccg cgcttcaccg
     2461 gcagggtcag ttcgaatgcg cccggcatgt cgagattctc ctcgacctcc agcgccgcca
     2521 gcgtggtgga gagatcggtg gccggcgaac cgctgacata gatgtcgaac ttgccgctca
     2581 tcttgttatt tgccgtagcc tgagggaatg ccgatcagtt tctgtaccgc gagcccgtcc
     2641 ggcaccgggc tgttgttggc gtcgcagagt ttccagaacc atgtggggtc gttgaggaag
     2701 cgtgccgcca ccaggtccag ccgctccgcc gctgggcgtt ggtagaatcc cgccagcggc
     2761 acgctctgcg gcggcagcgg caaggtgacg gctggcacct gttgcccgct tgccgtggtc
     2821 gcggtgtaga ggctttgctt gtagtagcgg ctatccgcgc tgaacatttt tcctcctttc
     2881 agatcggcag catgccgatg atgtcgccca cgccattggc gaggttggca agggcgagcg
     2941 cctcgcgcag cgttttcgaa acggaataag cggtgttggc gagatcgccg agcggaccat
     3001 ccacgtattg cagctcctgc ggcgtcagca ccttcagccc caccgagact tcggcatgga
     3061 tcgggttcaa cagcacattg tcgaagagtt tttccgtcgt cgtaagagat gtcagcttta
     3121 ccggcaggat gcgccccgga ccccagatga acagtaccgt cggcagttgc tgcgctggaa
     3181 tcggcgtgct cggccccgta ctgccgccag tgatgccgag cgccgaggag atcgagccaa
     3241 tgagcccgcc gccggaatta tcggtcggaa acagcagcat ctcgagtgcg gccagccgcg
     3301 tgtacacgcc gctgactttg gccagcccga cgctcgccgc attgccatcg gcgatcatgt
     3361 cattcgcatc gagcatcagg gtgaaggaga aggcttcgcc aggcggaccg gtgacagcga
     3421 gcgggttgga ggcgccgtct gcgggctgtg ccgtgctgcc gccggccgca ctcgccggcg
     3481 cgtgagcggc agcacccgtc gccgccgcgc cgccggtctg ggcgggcgtc caggtatgcg
     3541 tcatcgtttc cggattgtac tgaaagatca ccacattggg gatgggcagc ggaaatgtct
     3601 cggtgaagga gacgaaggcg ccgcgcagat aggagccggg cattttttac ctcccctctt
     3661 ccggaggccg ggcgcggaaa atggcgcggg caatcttcca ggcaatctgc tccacgcttg
     3721 tttccgccgg gctcagcgtt accgcgacgc gcggcagcgt catatcaccc gtccagccgg
     3781 tatcatgcgc gagatggctt gccacgagcc gcgaaagctg cccagcctgc gccgggtcga
     3841 atcctggaat ctccagtgtc agcctgtcga tatggatcga agcgagggcc tgtttctgtg
     3901 ccgtgccgct cattgtgccg cctccgccgg gcgcagccgc agcacctggc cgcgcttggc
     3961 catctcgcgc tgcacggcgg ccagcacgtg ccgcatgccg atcctcccgt cctcccgccg
     4021 ggcgagaaag gcggcactca gcgccgccga tttgatatcc gcacctgtca gactcatgcg
     4081 ctcggcgagc aggggccaat cgatgtcatc gagcagtttt gtgccatccg gcgccgtctc
     4141 gggcagcgcc ttgcgccaga tggcgagcct ttgcgccggg cccggcggca cgaaatccac
     4201 aacaaagcgt aagcggcgca aaaaggcggt gtcgatctcg ctcttgcggt tggttgccag
     4261 gatcgtgatg ccgtcgaatc gctcgatccg ctgcagcaga tagtcgatct cgatattggc
     4321 gaagcggtcg tggctgtcct tcacctgcat gcggctgccg aacagcgcgt ccgcctcgtc
     4381 gaagaacagc agtacgccgg cgcgttcggc gaaggcgaaa acgtcgcgca atctcttctc
     4441 ggtttcgccg acatatttgt tgatcacccc ggccagatcg acacggtaca gatcgagatc
     4501 gagcttgcgt gccatcacct gggcggccat tgtcttgccg gtgccgctcg gccccgcgaa
     4561 caaggccgcg atgccctcgc caagatgggt gaggcggccg aagccccagt tttcatagac
     4621 gtcccagcgc agctcgatct gcgccgcgaa atcgcgcaat tgcccggcga tgtcgggcgg
     4681 caccaccaga tcctcccagt cataggggca gtccagccgc gagaggattt cgctgtcggg
     4741 cggggcaatg cggcgcatgg ccaggcgcat ggccgccggc ccctgcggcg ccgccgtggc
     4801 gagcagcgcg atctcgcccg gcatcagccg ctggctggtg atctgcggtg gtggcggtgc
     4861 tgtgctcagg gcttgccaca cggccagccg cgccggaatt gccggcttgg gaagccgcac
     4921 cggaagcgca tcggcacggg tgatggcatc gggcgtgatg gcgcgcagcg tgctgagccc
     4981 atgcagcata tcgggcgcgg ggccgctggt ggcaagctgc tcgccatggc gcca
//
LOCUS       DASQCV010000642         1610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_967106, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000642 DASQCV010000000
VERSION     DASQCV010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_967106"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..434
                     /locus_tag="VEQ16_10060"
     CDS             <1..434
                     /locus_tag="VEQ16_10060"
                     /inference="COORDINATES: protein motif:HMM:NF019998.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HYP64224.1"
                     /translation="VILMRAGKIQQNDAPAALYERPETIFTARFIGSPPMNVLPAAML
                     ADRGALAASAPAQRDLAAMCFGIRPEALRIAAEGLPARVVAVEYLGGDSQIEARVGEE
                     IVLLRTGGTAAVAPGQHIHLTWAPREAHWFDASSGCRIART"
     gene            473..>1610
                     /locus_tag="VEQ16_10065"
     CDS             473..>1610
                     /locus_tag="VEQ16_10065"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP64225.1"
                     /translation="MIGSTALAAGTLAKPAIVRAATEISFYYPVAVGGPITKIIDGYA
                     ADFGKENPGISVRPIYAGTYQETIVKALIANKSGNPPVTCILLSTDMFSLIDEDAIVP
                     FDELAKSDAEKSWMGKFFPAFMENSRTGGKTWGIPFQRSTIVLYWNKEAFKEAGLDPQ
                     NPPKTWPELVAAAKKLTKTVNGKPQYGYGITGGGEFGNTIYRTLPLIWMNGGSILSDD
                     MKEVVVNQKPAVEAVEFYTGMLTKEKVSPPSTLQNDGLALRRLFIAGAIAMYQSGQFD
                     LGAIRKENPSLDFGSMPIPAPVGKKPAALLGGWHFIIPAAASNKDGAARLLAFLAEPG
                     NMGFYTDTFPARTSAMNLPRFQAPELAAFKEMLQYARPAPAHKNW"
BASE COUNT          309 a          522 c          502 g          277 t
ORIGIN      
        1 gcgtgattct catgcgcgca ggaaaaattc agcaaaacga tgcccccgct gccctttacg
       61 agcgtccgga aaccatcttc accgcgcgct tcattggatc gccgcccatg aatgtactgc
      121 ccgcggcgat gctggcggat cgcggcgcgc tggcagcctc cgcgcccgcc cagcgcgatc
      181 tcgccgccat gtgcttcggc attcgccctg aagcgttgcg gatcgccgcg gaaggcttgc
      241 ccgcccgcgt cgttgcggtc gaatatctcg gcggcgacag tcagatcgag gcgcgtgtgg
      301 gcgaggaaat cgtattgctg cggacagggg ggacggcagc cgttgcgccg gggcagcaca
      361 tccatctcac ctgggcgccg cgcgaggccc actggttcga cgcgtcatcg gggtgccgta
      421 tcgcgcgaac atgatctgga gcgggaggat aaacatggac aggcgacaat ttgtgatcgg
      481 ctcaactgcg ctggcggcgg gcacgctggc caagcccgcc atcgtgcgcg cagcaacgga
      541 gatctcgttc tattacccag tcgcggtggg cggcccgatc accaagatca tcgacggcta
      601 tgcggcggat ttcggtaagg agaatccggg catcagcgtc aggccgatct atgccgggac
      661 ctatcaggaa accatcgtca aggcgcttat cgccaataaa tccggcaacc cgccggtgac
      721 ctgcatactg ttgtcgaccg acatgttctc gctcattgac gaggacgcga tcgtgccgtt
      781 cgacgagctt gcgaagagcg acgccgaaaa gagctggatg gggaaattct tcccggcctt
      841 catggaaaac agccgcaccg gcggcaagac ctggggcatc ccgttccagc gctccaccat
      901 cgtgctctac tggaacaagg aggctttcaa ggaggcgggt ctcgatccgc aaaacccgcc
      961 gaagacctgg cccgagctcg tcgcggccgc aaagaagctc accaagaccg tgaacggcaa
     1021 gccccaatat ggctacggca tcacgggcgg gggcgagttc ggcaacacca tctatcgcac
     1081 cttgccgctc atctggatga atggcggctc gatcctctcc gacgacatga aggaggtcgt
     1141 ggtcaaccag aaaccggcgg tcgaggccgt cgagttctac acgggcatgc tgaccaagga
     1201 gaaggtgtct ccgccttcca ccttgcagaa tgacggcctc gccttgcggc gcctgttcat
     1261 cgccggcgct atcgccatgt atcaatccgg ccagttcgat ctcggcgcga tccggaagga
     1321 gaacccgtcg ctcgatttcg gcagcatgcc gatccccgcg cccgtgggga agaagcccgc
     1381 ggcgctgctg ggcggctggc acttcatcat tccggcggcg gcgagcaaca aggacggcgc
     1441 cgcgcgcctc ctcgccttcc tggcggagcc cggcaatatg ggtttctaca cggacacctt
     1501 cccggcccgg acctccgcga tgaatctccc gcgtttccag gcgccggagc tcgcggcctt
     1561 caaggaaatg ctccaatacg cgcggccagc tcctgcgcat aagaattggg
//
LOCUS       DASQCV010000643         2108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2955520, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000643 DASQCV010000000
VERSION     DASQCV010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2955520"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2045)
                     /locus_tag="VEQ16_10070"
     CDS             complement(<1..2045)
                     /locus_tag="VEQ16_10070"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP64226.1"
                     /translation="MNIFRRKRFESDMDAELRFHIAAYVDDLFRSGVPREEALRRARL
                     EFGALEATKDECRQAGGFQRIDELRADLHLTLRTLRQNPGFAAIAILSLALGIGANTA
                     VFSLMDVLLIRPLPVAHPDQLALLRLDADRYSFTYPLFRQVQDRNAVFSGIFASTYRR
                     VQVPEGADMLLIQAVYGSGEYFRTLGIAPVIGRIFGPDDDRPGGGADGPVAVISSGLW
                     SRKYGSSPAAIGQTMVVNSVVVTIVGVAPPGFFGTEVGNAPDIWLPLNLARQTGDNAA
                     CFDNPDCWFLRVIGRLRPDVSWDKAASNLRVISRPSMEATVKPGMRSDRKAKALARIV
                     EFEPGRSGYSGLRMRVKDPLAVLMALVALVLLIACANMAGLLTARASARWREVGMRLA
                     LGAGRGRLVRQFLTESLVLSAAGSAAGLLFSFWSTRLLIGVLSTADNPVRLDLRPDWR
                     VALFTTGTAIAAGILFGIWPALRSTRHGVAGILRERAHQLRASHQRSGFARHLLALQT
                     ALSVVLLAAAGLFAGTLVRLATLHPGFDPDHLTIVNVLNSRPPVIGQAAINLFGRLME
                     RARAIPGVESVTALSTMPLTGGGWDDFFAIPGRLDLSEEQRDADINTVGTSFSRTMGI
                     PLLEGREFNAGDTAQSEPVILISENAARRWFPNGGAIGARIRAESSGPQPRRIVGIVG
                     "
BASE COUNT          415 a          625 c          747 g          321 t
ORIGIN      
        1 cctactatac ctacgatccg ccggggttgg ggaccggaac tctccgcccg gatgcgagcg
       61 ccgatggctc cgccattggg aaaccagcgg cgcgcggcgt tctcgctgat cagaataaca
      121 ggctcggatt gcgccgtgtc ccccgcgttg aattcacggc cctccagcag gggaatgccc
      181 atggttctgc tgaagctggt gccgaccgta ttgatatcgg catcccgctg ttcttcggaa
      241 agatcgagcc ggccgggaat ggcgaagaaa tcgtcccatc ccccgccggt tagcggcatg
      301 gtggaaagcg ccgtaaccga ttcgacgccg gggatagcgc gcgcgcgttc catgagccgg
      361 ccgaacaggt tgatggcagc ctgtcctatg acgggcggac gggaattcag tacgttgacg
      421 atggtgaggt ggtcgggatc gaaaccgggg tggagagtgg caagccggac gagtgtgccg
      481 gcaaaaagcc cggcggcggc caacagcact accgaaagcg cagtctgcag ggcaagcagg
      541 tggcgggcga aaccggaccg ctggtgagac gcgcgtagct ggtgtgcgcg ctctcttagg
      601 atgccggcaa ccccgtggcg tgtggagcgc agggcgggcc agatgccaaa caggatgcca
      661 gccgcgatgg ccgtgcctgt cgtgaaaaga gcgacgcgcc agtcggggcg gaggtcgagg
      721 cggacgggat tatccgcggt ggaaagcacg ccgatgagga gccgcgtgga ccagaaggag
      781 aacaggagtc cggccgctga cccggccgcc gacaaaacca ggctttcggt gaggaattgg
      841 cgaactaagc ggccgcgacc cgcgccgagc gcaaggcgca ttcccacctc acgccagcgt
      901 gccgaggcgc gggctgtcag cagacccgcc atgttggcgc aggcgatgag aaggacgagg
      961 gcgaccagcg ccatgagtac ggcgagcgga tctttcactc gcatgcgcag cccgctgtag
     1021 cccgaccggc cgggttcgaa ttccacgatc cgcgccagag ccttggcttt gcgatcggag
     1081 cgcataccgg gttttacggt agcttccatg ctggggcgcg agatgacccg caggttggag
     1141 gcggctttgt cccaggagac gtccggccgc aggcggccta tcacacgcag gaaccagcag
     1201 tccgggttat cgaagcaagc ggcgttgtcg ccggtttggc gagcgaggtt gagtggcagc
     1261 caaatgtccg gcgcgttccc gacttccgta ccgaagaagc ctggcggcgc gacgccgacg
     1321 atggtcacca ccacgctgtt gaccaccatg gtttggccga ttgcggcggg actgctgcca
     1381 tacttgcgcg accagaggcc gctggagatg acggcaaccg gaccgtccgc gccgccgccc
     1441 gggcgatcgt cgtccggacc gaaaatgcgg ccgatgacgg gtgcgatgcc gagcgttcgg
     1501 aaatactcac cgctaccata gacggcctgg atcagcagca tatccgcgcc ttcaggcacc
     1561 tgcactctac ggtacgtcga ggcgaaaatg cccgaaaaga cggcgttgcg gtcctgcacc
     1621 tggcggaaaa gcggatatgt gaaggagtac cgatcggcgt cgagccgaag gagcgcaagt
     1681 tggtccggat gcgcgaccgg cagcggccgg atgagcagca catccataag gctgaagacc
     1741 gccgtgttgg cgccgatgcc gagagcaagg gaaagaatcg cgatggcggc gaagccgggg
     1801 ttctgacgga gggtgcgcag agtgaggtgc aggtcggcgc gcagttcgtc gatgcgctgg
     1861 aatcccccgg cctggcggca ttcgtccttg gtggcttcga gcgcgccgaa ttcgaggcgg
     1921 gcgcggcgca aggcctcctc gcgcggaacg ccggagcgga agaggtcatc tacataggcg
     1981 gcgatgtgga agcgcaactc ggcatccatg tcactttcga accgtttgcg gcggaagatg
     2041 ttcacaactc ctccgggacg gcgccaagca caccggcgat tacggccgag aagcgattcc
     2101 aggaatcg
//
LOCUS       DASQCV010000644         2198 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2955638, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000644 DASQCV010000000
VERSION     DASQCV010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2198)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2198)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2198
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2955638"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..458)
                     /locus_tag="VEQ16_10075"
     CDS             complement(<1..458)
                     /locus_tag="VEQ16_10075"
                     /inference="COORDINATES: protein motif:HMM:NF016184.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein tyrosine phosphatase family protein"
                     /protein_id="HYP64227.1"
                     /translation="MPGDPTDIHVWRRLDARLTTSGQPSEEQLAALQALGVTHVVNLG
                     LHTHEKALPDEAGSVRALGMAYVHIPVAFDNPTDADFAQFRATMQALEGRTVHVHCIA
                     NLRVSAFMYRYRREILPEPEARAEMEHLWRPGGVWARFIGDEEGQSLPHR"
     regulatory      complement(476..558)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01750"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="ZMP/ZTP riboswitches appear to regulate genes
                     involved in one-carbon metabolism; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="5-aminoimidazole-4-carboxamide
                     ribonucleotide (ZMP)/
                     5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl
                     5'-triphosphate (ZMT)"
                     /db_xref="RFAM:RF01750"
     gene            721..1581
                     /gene="folD"
                     /locus_tag="VEQ16_10080"
     CDS             721..1581
                     /gene="folD"
                     /locus_tag="VEQ16_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HYP64228.1"
                     /translation="MAEIIDGKAFAAKLRDAITAEVATLPYKPGLAVVLVGDDAASKV
                     YVGSKEKQTVEVGMRSFAHRLPAETTQADLLALVRQLNADPAVHGILVQLPLPKHLNA
                     DEIIANISPDKDVDGLTVTNAGRLAAGLPGLVPCTPLGCLLLLQDVIPDLTGLNAVVI
                     GRSNLVGKPIAQLLLQQNCTVTMAHSRTRDLAALCRSADILVAAVGKPEMVKGDWVKP
                     GAVVIDVGINRVPAGTEGKTKLVGDVAYAEAAQIAGKITPVPGGVGPMTIACLLRNTL
                     TAAKRLETAQ"
     gene            1795..>2198
                     /locus_tag="VEQ16_10085"
     CDS             1795..>2198
                     /locus_tag="VEQ16_10085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYP64229.1"
                     /translation="MPEQITEPYTTGSSAAAVSDLTLEQAIGVQVRQLRRRVGITVSE
                     LAASAGLSGGMLSKIENGQISPSLASLQALATALNVPITTFFSTFEEKRDCSFVKAGT
                     GVIIERRGTKSGHQYSLLGHALGGNVVVEPYL"
BASE COUNT          438 a          677 c          687 g          396 t
ORIGIN      
        1 taacggtggg gcagggactg cccttcctcg tcgccgataa accgcgccca tacgccgccg
       61 ggacgccaga ggtgctccat ctccgcacgc gcctccggct ccggaaggat ctcgcgtcga
      121 taacgataca taaaagccga aacccgcaga tttgcgatgc aatgcacatg caccgtccgc
      181 ccctccagcg cctgcatcgt ggcgcggaat tgcgcgaaat ccgcatcggt cgggttgtcg
      241 aacgcgacgg ggatatggac atacgccatc cccagtgccc gcacgctccc ggcctcgtcg
      301 ggcaaagctt tctcatgcgt atgcaggccg agattcacga catgcgtgac cccgagcgcc
      361 tgcagcgcgg caagctgctc ctcgctcggc tggccggacg tcgtcaggcg ggcatcgagc
      421 cgccgccata catgaatatc ggtcggatcg ccgggcatga cacatctcca tggtggaagg
      481 atgcccaggc gagcggcggt gcaaaaatcc gcgctccacg gtggtgctcc acctgactcg
      541 ccagttgcgc ggacggggcc atcatggccc ggaaaagcca ggctgcaaag ctatcatgac
      601 ggcaagagca tggatttttt acagcatctg caataatcag agcgcgccgt ccggcgtcat
      661 cttgtttatt cctttaaggt actttaattt actttaggga aatttttagg agcaaaaatc
      721 ttggcagaga tcatcgacgg caaggctttc gcggcaaagc tccgggacgc catcacggcg
      781 gaagtcgcca cgctgcccta taagcccggc ctcgccgtgg tgctggtggg ggatgacgcg
      841 gcctcgaaag tctatgtcgg cagcaaggag aagcagacgg tggaggtggg catgcgctcc
      901 ttcgcacacc gtctgccggc cgagacaacg caggccgatc tgctggcgct ggtgcgacag
      961 ctcaatgccg atccggcggt gcatggcatt cttgtgcagc tgcctctgcc gaagcatctc
     1021 aatgccgacg aaatcatcgc caacatctcg ccggacaagg atgtggacgg gctgaccgtg
     1081 accaatgccg ggcggctcgc cgccgggctg ccggggctgg tgccctgcac gccgctgggc
     1141 tgcctgctcc tcctgcaaga tgtaattccc gacctgacag ggttgaatgc ggtggtgatc
     1201 ggccgctcca acctggtggg caagcccatt gcgcagcttc tgctgcagca gaattgcacc
     1261 gtcaccatgg cgcattcccg cacccgcgac ctcgccgccc tgtgccgcag tgcggacatc
     1321 ctcgttgctg ccgtgggcaa gccggagatg gtgaaggggg attgggtcaa gccgggtgct
     1381 gtggtcatcg atgtcggcat caatcgagtt ccggccggaa cggaaggcaa aaccaagctg
     1441 gttggcgatg tggcttatgc agaagccgcc caaatcgcgg gcaaaatcac ccctgtgccg
     1501 ggcggggtgg ggcccatgac cattgcttgc ctgctgcgca acacgctgac agccgccaaa
     1561 cgcctggaaa ctgcgcagtg agggtggctc ctgcgtgatc cggcggcgaa gctgcctaaa
     1621 caatgtcgtg atactgtaaa caaggctaga aatttcaact tccgcggcat agaatttatg
     1681 tcaggagggc tgatagagcc gatgcggacg caggggaaaa cggggcaaca agcccgaatg
     1741 atcaaagcca gcctgccaga cgtccaagct gaagcaggag gaacggaggc tggattgccg
     1801 gagcagatca cagaacctta taccaccggc agtagtgccg ccgccgtgtc cgatctgaca
     1861 ctggagcagg ccatcggtgt gcaggtgcgc cagctgcgcc gccgtgtcgg catcaccgtg
     1921 tccgagcttg ccgcctcggc cggactctcg ggcgggatgc tgtcgaagat cgagaatggg
     1981 caaatctcgc cctcactcgc ctcgctgcag gcgctggcga cggcgctcaa tgtgcccatc
     2041 accaccttct tctccacctt cgaggaaaag cgcgactgct ctttcgtgaa ggcgggcacg
     2101 ggcgtcatta tcgagcgccg cggcaccaag tccggccacc aatattcgct gctgggtcac
     2161 gcgctgggcg gcaatgtggt ggtggagccc tatctcat
//
LOCUS       DASQCV010000645         1695 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1631677, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000645 DASQCV010000000
VERSION     DASQCV010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1631677"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(252..512)
                     /locus_tag="VEQ16_10090"
     CDS             complement(252..512)
                     /locus_tag="VEQ16_10090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009539961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HYP64230.1"
                     /translation="MNILYWLVFGLIAGAIAKFLMPGKAPGGIIMTIVLGIVGAVVGG
                     FIGTHLLNLGDISEFNLRSMALAVGGAILVLVVYGLLTRARA"
     gene            complement(742..>1695)
                     /locus_tag="VEQ16_10095"
     CDS             complement(742..>1695)
                     /locus_tag="VEQ16_10095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64231.1"
                     /translation="PGGVAAHGSRAGAAVGPGGAVAAGSRAGAAVGPGGAVAAGSRAG
                     AAVGPGGAVAAGSRAGVAVGPYGAAAAGGRGVVARGGGTYAAGTRFVSASDLRGQGAY
                     VRNSFNSYNAFTPGWNRRYPGAWLAGGWVAGSAWSAANWGACASYIGYAADTSPIYYN
                     YGDNVTYQDNSVYYGDQVIATQDDYAEQAVQIADSGRNAQPPADEKWQALGVFAMVKG
                     DEQTSNDIFQFALNKEGVLRGNYYNAASDSTQPVYGSLDNKAQRVAWSIGDKKDPVYE
                     TGLYNLTQDETTMLVHQGKERTEQYKLFRVEQQEEKKEPDK"
BASE COUNT          286 a          550 c          516 g          343 t
ORIGIN      
        1 accgagaaga atcagaacaa tccccaggac gaggtaccac ccccagtttc ggcggacgcc
       61 ttccagtccc accagcagcg gattcatgct catggcttca gctcctttac aactcacggc
      121 cgcgcggcgg gcttgcagcc cgccgcgcat ttacgtgatc atggaattct gcgaacagtc
      181 ttaattcgcc atagcacatg cccgccgcta atcgtttttc atgcggacga tgcgccgtac
      241 ttttcggcag ctcaggcccg ggccctggtc agcagcccgt agacgaccaa aacaagaatc
      301 gctccgccca ctgctagcgc catgctgcgc aaattgaact ctgaaatatc tcctaagttg
      361 agcagatgag tgccgatgaa cccaccgacc acggctccca cgatgcccag gacaatcgtc
      421 atgatgatcc cgcccggtgc ttttccaggc atcaaaaact tggcgatcgc accggcgatc
      481 aagccgaaca ccagccagta cagaatattc atcgtcaacc tcccgttcag ttagaacttt
      541 gaatgcgccc tggtgagcac gagcggctcg gccctcaagt cggcgccacg ttgcgaatat
      601 ggcgtctcca agtttggaat ctggatcgcc ttttttttga gcgttcacac ccgggcgatg
      661 cgaggttggt tttgatgttt ggcctcctta ttcgctcatt tgaattggtc catttcacct
      721 tttgcttgag cgagcgctgg ctcacttgtc cggttccttc ttctcctcct gctgctcgac
      781 gcggaacagc ttgtattgct cggtgcgctc cttgccctgg tgcaccaaca tggttgtttc
      841 atcctgcgtc aggttgtaca ggccggtctc gtagactggg tcctttttgt cgccaatgga
      901 ccaggcgacg cgttgcgcct tgttgtcgag cgagccgtag actggctgag tcgaatccga
      961 ggcggcattg tagtagttgc cgcgcagcac gccttccttg ttgagggcga actggaagat
     1021 gtcgttggag gtttgctcgt cccccttgac catggcgaaa acgccgaggg cctgccattt
     1081 ttcatcggcg ggcggctggg cgttccggcc gctgtcggcg atctgcaccg cctgctcggc
     1141 atagtcgtcc tgcgtggcga tgacttggtc gccgtagtag acgctgttgt cctgataggt
     1201 cacgttgtcg ccgtagttgt agtagatcgg cgacgtgtcc gcggcgtagc cgatgtagct
     1261 ggcacaagcg ccccagttgg cggcggacca ggccgagccg gccacccagc cgccggcgag
     1321 ccaggcgccg ggataacggc gattccaccc tggggtgaag gcgttgtagg aattgaagct
     1381 gttgcggacg taggcgccct ggccgcgcag atcggaggcg gagacgaagc gggtgccggc
     1441 ggcatatgtc ccgccgccgc gcgcaacgac gccacgcccg ccggccgccg cggcgccgta
     1501 aggtccgacg gcgacgccgg cccggctgcc agcggccact gcgccacccg gtccgacagc
     1561 agcgccggcc cggctgccag cggccacggc gccgcctggt ccgacggcgg cgccggcccg
     1621 gctgccagcg gccacggcgc cacctggtcc gacggcggcg ccggctctgc tgccatgggc
     1681 cgcgactccg ccggg
//
LOCUS       DASQCV010000646         2492 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_301055, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000646 DASQCV010000000
VERSION     DASQCV010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2492
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301055"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1609
                     /locus_tag="VEQ16_10100"
     CDS             <1..1609
                     /locus_tag="VEQ16_10100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HYP64232.1"
                     /translation="HTVPYGDRSGTTIEPLLTTQWYCNAYVLAQPAIKAVEEGRTKFV
                     PQQWENTFFAWLRDIQPWCISRQLWWGHRIPAWYDEAGKVYVARTEEEARAQAGGAAL
                     TQDEDVLDTWFSSALWPFSTLGWPEQTPELQKYYPTDTLVTGFDIIFFWVARMMMMGI
                     HFMGDVPFRTVYIHGLVRDEKGQKMSKSKGNVLDPLTLIDEYGADALRYSVAAAAGQG
                     RDVKLGAKIVENNRAFVTKIWNAARFLEMNGVKPNPAFKPEEAKLPLCRWILERTSDT
                     CGWATAALDNFQTSVYGLTCYHFIWDEFCDWFIELAKPGFSTEDAQEIRDTAAYVLNV
                     LLRLLHPLMPFVTEELWDHFGYGEAFSLISAPWPKPFLIDTYAMEAIKEIDWVIALIT
                     EIRSVRSEMNVPPSQKSPVLLQDAAPETLARAERWFEALSRMARVSEIGPLTGPAPKN
                     AAQAVLGEATIILPLEGLIDLDAERKRLAGALAKAQGELTKVTAKLANADFTSRAPEA
                     VLDEHREREEGFGSEVKRLMAALERIS"
     gene            1618..>2492
                     /locus_tag="VEQ16_10105"
     CDS             1618..>2492
                     /locus_tag="VEQ16_10105"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HYP64233.1"
                     /translation="MRILLVNHEFTITGASTVFWRLARHLKARGHELGLYPCNPEDGP
                     MKPRFEALGIAILGQAVVAEYDLVIANTVCAGGVVIQAGSFTPVIWFLHETEIGLQII
                     LQTPALAEAFRTAAAVVYQTSHQAEMYRSFTYQLDPRKFAVIPNGIEPVPEHLPSVTE
                     KGRALRIVQVGSVEPRKRPGDLIRAVVRSGIDADCVICGKFFVLDEEAQALVDARPGQ
                     FHFTGEVEPDEALAWMRSGDIYALVSASESQPVSVLEAAAMGKALLLTSLPSYAGAYT
                     HGRNCLMAPAGHVEL"
BASE COUNT          458 a          729 c          799 g          506 t
ORIGIN      
        1 ccataccgtg ccttatggcg accgttccgg caccaccatc gagccgcttc tcaccacgca
       61 atggtattgc aacgcctatg tgctggccca gccggccatc aaggcggtgg aggaaggccg
      121 caccaaattc gtgccgcagc aatgggagaa cacctttttc gcctggctgc gcgacatcca
      181 gccctggtgc atctcgcgcc agctctggtg ggggcaccgc atcccggcct ggtatgacga
      241 ggcgggcaag gtctatgtgg cgcgcaccga ggaagaggcg cgcgcccagg ccggaggtgc
      301 cgcgctgacc caggacgagg acgtgctgga tacctggttc tcctccgcgc tctggccctt
      361 ctccactttg ggctggcccg agcagacgcc ggagctgcag aaatattacc cgaccgatac
      421 gctggtgaca ggcttcgaca tcatcttctt ctgggtcgcc cggatgatga tgatgggcat
      481 ccatttcatg ggcgatgttc ccttccgcac cgtctatatc cacgggctgg tgcgcgacga
      541 gaagggacag aaaatgtcca agtcgaaggg caatgtgctc gatccgttga ccctgatcga
      601 cgaatatggc gcggacgcgc tgcgctattc cgtggcggcg gcggcggggc aggggcgcga
      661 tgtgaagctc ggcgcgaaaa tcgtcgagaa taaccgggct tttgtcacga agatatggaa
      721 tgcggcgcgc ttcctggaga tgaacggggt gaagccgaac ccggctttca agccggaaga
      781 ggcaaaattg ccgctctgcc gctggattct tgagcgcact agtgacactt gtggttgggc
      841 gacggcagcc ttggataact ttcaaaccag cgtttacggt ttgacttgtt atcattttat
      901 ttgggacgaa ttctgtgatt ggttcataga attggccaag cccggtttca gtacagaaga
      961 tgcgcaggaa atacgtgata ccgcagctta tgttctgaat gtattgctgc ggcttttgca
     1021 tcctcttatg ccgtttgtga cggaagagtt gtgggatcat tttggctatg gtgaagcatt
     1081 ttcgctgatc tcggcgccgt ggccaaagcc atttctcatt gatacttatg cgatggaggc
     1141 tatcaaagaa attgactggg tgatcgctct catcaccgaa atccgctccg tgcgctcgga
     1201 gatgaatgtg ccgccttcgc aaaaatcccc tgtgctgctg caggatgcgg cgccggagac
     1261 gctggcgcgg gcggagcgct ggttcgaggc cctctcgcgc atggcccgcg tgtccgaaat
     1321 cggcccgctc acaggccccg cgccgaagaa tgcggcgcag gccgtgctgg gcgaggccac
     1381 gatcattctg ccgctggaag ggctgattga cctggacgcc gagcggaagc gcctggccgg
     1441 ggcgctggcc aaggcgcaag gcgagctgac gaaggtgacc gccaagctag ccaacgccga
     1501 tttcacctcc cgcgcgccgg aagccgtgct ggacgagcac cgcgagcgcg aggagggttt
     1561 tggttctgag gtaaaacgtc tgatggcggc actcgaacgg atttcctgaa ccgctcgatg
     1621 cgcatcctcc tggtcaatca cgaattcacc atcactggcg cgagcacggt attctggcgc
     1681 ctggcgcggc atctcaaagc gcgcggccat gagcttggcc tctatccctg caacccggaa
     1741 gacgggccga tgaagccgcg cttcgaagcg ctcggcatcg ccattctcgg gcaggcggtg
     1801 gtggctgagt atgatctcgt gatcgccaat acggtctgcg cggggggcgt ggtgatccag
     1861 gcggggagct tcacgccggt catctggttt ctgcatgaaa cggaaatcgg gctgcagatc
     1921 attctgcaaa cgccggcact ggcggaggcg ttccgtaccg ccgcagcggt ggtctaccag
     1981 accagccatc aggcggagat gtaccgctcc ttcacctatc agctcgaccc gcgcaaattc
     2041 gccgtcatcc ccaatggcat cgagcctgtt cccgagcatc tcccgtctgt cacggaaaag
     2101 ggcagggcgc tgcgcatcgt ccaggtgggg tccgtggagc cgcgcaagcg tccgggtgac
     2161 ctcatccgcg ccgtggtgcg cagcggtatc gatgcggatt gcgtgatctg cggcaaattc
     2221 ttcgtgctgg atgaggaggc tcaggcgctg gttgatgcgc ggccggggca attccatttt
     2281 accggcgagg tggagcccga tgaagcgctc gcctggatgc gctccggtga catttatgcc
     2341 ctggtttccg cgagtgaatc ccagcccgtt tcggtgctgg aggccgccgc catgggcaag
     2401 gctctgctgc tgaccagcct gccctcctat gcgggagcat atacccatgg ccgcaactgc
     2461 ctcatggcgc cggccgggca tgtcgagctg tt
//
LOCUS       DASQCV010000647         4393 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2293893, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000647 DASQCV010000000
VERSION     DASQCV010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4393
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2293893"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VEQ16_10110"
     CDS             complement(<1..269)
                     /locus_tag="VEQ16_10110"
                     /inference="COORDINATES: protein motif:HMM:NF014816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HYP64234.1"
                     /translation="MIELYGMFSPNVRKVGIMLEELGLAYKLHHIAVFRGDQFEPSFL
                     ALNPLGKVPVLIDHERGGGQPIFESGAILIYLAETYGAFLPASGPA"
     gene            complement(333..1730)
                     /gene="fumC"
                     /locus_tag="VEQ16_10115"
     CDS             complement(333..1730)
                     /gene="fumC"
                     /locus_tag="VEQ16_10115"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HYP64235.1"
                     /translation="MKTRTEHDALGDVEVPAARLWGAQTQRSLENFVIGRRNYIWGRG
                     VIRAFGILKKSAAMANQELGQLSAEKARLIETAAQEVIDGKWDEEFPLVVFQTGSGTQ
                     SNMNANEVIANRAIQLAGGVLGSKKPINPNDDVNHSQSSNDTFPTAMHIAAAEALNSQ
                     LLPAMERLAGIFGAKAEVFADVVMTGRTHLQDATPVTLGQVISGWLAQLEAAQDNILA
                     TLPGLYQLAIGGTAVGTGLNAHPEFGARAAFHIARETGLPFRTADNKFAALSAHDAVV
                     AASGAVRVLAGATMKIANDVRWYASGPRTGIGELLIPENEPGSSIMPGKINPTQCEAL
                     TMVAVQVFGLDHAVAFAGSQGNFQLNVFKPVMLHDFLDAVSLLAEALESFSTHCAEGI
                     EPARGKIAENLARNLMLVTALNPHIGYETSAKIALKAHREGLTLRDSALALGVAPADF
                     DDWVNPEAMTRPLDV"
     gene            complement(1926..2210)
                     /locus_tag="VEQ16_10120"
     CDS             complement(1926..2210)
                     /locus_tag="VEQ16_10120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019015750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64236.1"
                     /translation="MEFTPEKRRNAPEDSLWAVVAIIGRVIRIAEIFPNRTAALRDQA
                     WREAQVRAYASFLERTGQVSPRYIIRPIRRTDLPRRWKPLPALGFLNGNL"
     gene            complement(2254..3006)
                     /locus_tag="VEQ16_10125"
     CDS             complement(2254..3006)
                     /locus_tag="VEQ16_10125"
                     /inference="COORDINATES: protein motif:HMM:NF015748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WecB/TagA/CpsF family glycosyltransferase"
                     /protein_id="HYP64237.1"
                     /translation="MGTMNQPIIQLLGIDFCNIGIDTAVERLLARPEGARLSYVVTPN
                     ADHIERLLRIPGLRPIYRRALFCLLDSTLVSHVARHLGLATPPVVPGADLTEALLPHL
                     SGKRVAVIGMDEPDFSKLVQRFPEISFIHYKPPMRLLHDVAAFNRTRDFVIDTQAAFT
                     FFAVGSPVQEMLAYAASGENQAVGVGLCIGSSLSFAAGTVKRAPLWMRRAGLEWIQRL
                     AHNPRRLAGRYLVSDPLVLLALSWTALREKFH"
     gene            complement(2994..4211)
                     /locus_tag="VEQ16_10130"
     CDS             complement(2994..4211)
                     /locus_tag="VEQ16_10130"
                     /inference="COORDINATES: protein motif:HMM:NF021589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HYP64238.1"
                     /translation="MHQPVRRKTIFRLAVFVLLLLPLPAGAQLLDELLPPAIPGYGQR
                     FSVIAQHRQFAPGATGWNFGSITAAPSLSASAGYDSAPGGSSASPTLQTSPSLLLTDP
                     VAGFGLYGEANFSTYPANHSQDTKTALIAAGERINPPRQTVMISAAYLHGAVTGFAFD
                     TQEITRPIPFDLQDVRVSDRIASGLFTLTPDFSFTRYVFSGMSAVANRVQPRAALTIA
                     YVPGGPLSALLRAGTTQLDYSDASQDAGIYELLAGLQDQADGLWTISLLAGAASRQPR
                     QGASLTTPVLEARADWMPTMLDEISLAASREIDDPDAISATPYTRSSLKLLLNHQLLE
                     NVTINTLADFATANYIHTNLQEFLATAKISVQWQVSSALTVEAIYCFNTRQSNALRAA
                     NEHVVTAGLTWAL"
BASE COUNT          868 a         1208 c         1515 g          802 t
ORIGIN      
        1 gccgggccgg aggcgggcag gaaggcgccg taggtttcgg cgagatagat gaggatggcg
       61 ccggactcga aaatcggctg gccgccgccg cgctcatggt cgataagcac cggcaccttg
      121 cccagtggat tgagggccag gaaggagggc tcgaactgat cgccccggaa cacggcgata
      181 tggtgcagct tgtaggccag ccccaattct tcgagcatta tgccgacctt gcgcacattc
      241 gggctgaaca tgccgtaaag ctcgatcatt ttctgcttcc cccgccgctt ttgacagcga
      301 ggagactacc cagggccaga atttgtcaac gcttaaacat caagcggcct ggtcatggct
      361 tcggggttca cccagtcatc gaaatcggcc ggggcgacgc cgagggccag ggcagagtca
      421 cgcaaggtca gaccttcgcg atgcgccttg agggcgattt tggcggatgt ctcgtagccg
      481 atatgcgggt tgagggcggt gacgagcatg agattcctgg cgagattctc agcgattttt
      541 ccgcgcgcgg gttcgatgcc ctcggcgcaa tgggtggaga atgactccag cgcctcggcc
      601 aggagcgaaa cagcgtcgag gaagtcgtgc agcatcaccg gcttgaagac gttgagctgg
      661 aaattgccct ggctgccagc gaaggcgacg gcatggtcga gcccgaacac ctgaacagcg
      721 accatggtga gcgcctcgca ttgggtcggg ttgatcttgc cgggcatgat ggaggagccg
      781 ggctcgtttt cggggatcag cagctcgccg atgccggtgc gcgggccgga ggcataccag
      841 cgcacgtcat tggcgatctt catggtggca cctgcgagaa cgcggacagc gccagaggcg
      901 gcgaccacgg cgtcatgcgc cgagagggcg gcgaatttat tgtcggccgt gcggaaaggc
      961 aggccggttt cgcgcgcgat atggaaggcg gcgcgggcgc cgaattcagg gtgggcgttg
     1021 agcccggtgc cgacggccgt gccgccgatg gcgagctggt agagacccgg cagggtagcg
     1081 aggatattgt cctgtgccgc ctcaagctgg gccagccagc cggagatgac ctggccgagc
     1141 gtgacgggcg tcgcatcctg cagatgggtg cggccggtca tcaccacatc cgcgaaaacc
     1201 tcggccttgg caccgaaaat gccggccagc cgttccatcg cgggaagaag ctggctgttc
     1261 agcgcctcgg cggcggcgat gtgcatagcg gtggggaaag tgtcgttgga ggactggctg
     1321 tgattgacgt cgtcattcgg gttgatgggc ttcttgctgc ccagcacgcc gcccgcgagc
     1381 tggatggcac ggttggcgat gacttcgttg gcgttcatgt tgctctgggt gccggagccg
     1441 gtctggaaca cgacgagcgg aaactcctcg tcccatttgc cgtcgatgac ctcctgcgca
     1501 gcggtttcga tgaggcgggc cttttcggcg gatagctggc ccagctcctg gttggccatg
     1561 gcggcggatt tcttgaggat gccgaaggcg cggatgaccc ccctgcccca gatgtaattg
     1621 cgcctgccta tgacgaaatt ttccagactg cgctgggttt gcgcgcccca gaggcgtgcg
     1681 gcggggactt cgacgtcgcc aagggcgtcg tgttcggtgc gggttttcat aagggaaaga
     1741 tagggccgct tttttgaaaa aaagtggttt tctgctcctg gggtccgagt ttttgactcc
     1801 atgggaagcc caggcgtccc atggagtcaa aaactcgtag ctcaagtaat gggggtccgg
     1861 ggcctcaggc cccggcgggt cgtcacgccg aaggcgtgca ttcgcacgac ggcagagccc
     1921 tggccttaaa gatttccgtt aaggaacccc aacgccggca gcggtttcca gcgtcgcggc
     1981 aaatccgtcc gccgtatagg ccggatgata tagcgcggcg agacctgccc tgtgcgctcc
     2041 aagaaggaag cataagcgcg tacctgcgcc tcgcgccaag cctggtcgcg cagggcagcc
     2101 gtccggttgg ggaagatttc ggcaatacgg atgacgcggc cgatgatggc gacgacggcc
     2161 cagagcgaat cttctggggc gtttctgcgc ttctcaggcg tgaattccac cgtgcaccct
     2221 ccggcagcca ctataacgcg gcggctggaa aagtcagtgg aatttttccc gcaatgccgt
     2281 ccaagacaga gctagcagca ccagcgggtc ggagacgaga tagcgcccag ccaggcggcg
     2341 cgggttgtga gccagccgct ggatccattc cagcccggcg cggcgcatcc agagcggggc
     2401 gcgtttgacc gtgcctgcgg caaaggacag ggacgagcca atgcacagcc ccacgcccac
     2461 ggcctgattc tcaccgctcg cggcataggc cagcatttcc tgcactggcg aaccaacagc
     2521 gaaaaaggtg aaggcggcct gtgtgtcgat gacgaagtca cgcgtgcggt tgaaggccgc
     2581 aacatcatgc agcagccgca tcggcggctt gtaatggatg aaggatatct ctggaaaacg
     2641 ctggacgagc ttgctgaaat ctggctcatc cataccgata acggcgacac gcttgccgct
     2701 tagatggggg agcagcgcct cggtgaggtc ggcgccagga acaacgggcg gcgtggccag
     2761 gccgagatgg cgcgcgacat gggagacgag agtggaatcc agcagacaaa acagcgcacg
     2821 ccggtagatg gggcgcaggc cgggaatgcg gagcaaccgt tcgatatggt cagcattagg
     2881 agtgacgaca taggacaaac gcgcgccttc cggccgggcg agcaagcgct cgacagcggt
     2941 atcgatgcca atattgcaga aatcgatgcc cagaagctgg atgatcggtt gattcatagt
     3001 gcccatgtca ggcccgccgt gaccacatgc tcattggcgg ctctgagcgc gttggactga
     3061 cgtgtgttga aacaatagat agcctccacc gtcagggcag atgaaacctg ccactgtacg
     3121 ctgattttag cagttgccaa aaactcctgt agatttgtgt gaatataatt ggctgtcgca
     3181 aaatctgcta acgtattaat ggtaacattt tcgagaagtt ggtgatttaa caacaatttt
     3241 agggaagagc gcgtataggg cgtggcggag atggcgtcgg gatcgtcaat ttcccggctt
     3301 gccgccaggg atatctcatc gagcattgtc ggcatccaat ccgctcgcgc ttcgagcacg
     3361 ggtgtggtga ggctagcacc ttggcgcggc tggcggctgg cggcgccggc cagaagcgag
     3421 atggtccaga gcccgtccgc ctggtcctgc agcccggcga gcaattcgta aatgccagca
     3481 tcctggctgg catcgctgta atcgagctgg gtggtgccgg cgcgcagcaa ggcggaaagc
     3541 gggccgcccg gcacataggc gatggtgagc gccgctcgcg gctgaacgcg gttggctacc
     3601 gcggacatgc ccgagaagac atagcgggtg aagctgaagt ccggcgtgag agtgaagagg
     3661 cctgaggcga tcctgtcgct gacgcgcaca tcctggaggt cgaacggaat gggacgggtg
     3721 atctcctgcg tatcaaaggc gaagccggtg accgcgccgt gcagataggc cgcggagatc
     3781 atgaccgtct ggcgtggcgg gttgatacgc tcgccggcgg caatgagggc ggttttcgta
     3841 tcttggctgt gattggcggg ataggtggaa aagttcgcct ccccgtacag accgaagccc
     3901 gccacagggt cggttagcaa caggctgggg ctggtttgca gcgtaggcga agcgctggag
     3961 ccgccgggcg cggaatcata tccagccgag gcagagaggc tgggcgctgc ggtgatgctg
     4021 ccgaaattcc aacccgtcgc gccgggggca aattgccggt gctgagcgat gacgctgaat
     4081 ctctggccat agccgggaat ggcggggggc agcagctcat cgagcagctg ggcgccggcc
     4141 ggcaggggca gcaagagcag aacgaatact gccaggcgga aaattgtttt gcggcgcacc
     4201 ggctggtgca tagcactaac cttaggttat aagtccacta taaaactatc taaggttaca
     4261 attttgcgtg agtggcggcc ggatatcgaa caggcgaaag ggctggcgat cttgctggtc
     4321 gtgttcggcc atctggtggc gcgccaggac ccggaagggg tgcattggta cgagccgctg
     4381 cgccgcgccg tct
//
LOCUS       DASQCV010000648         1919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2956195, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000648 DASQCV010000000
VERSION     DASQCV010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2956195"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(356..1258)
                     /locus_tag="VEQ16_10135"
     CDS             complement(356..1258)
                     /locus_tag="VEQ16_10135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019461100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2189 domain-containing protein"
                     /protein_id="HYP64239.1"
                     /translation="MATYHSNVSSVQPVEEAEPVIRTISLSDLQEALRLGWEDFKAVP
                     SHAIILCAIYPVLGLILARAVLGYAVIPLLFPLAAGFALLGPFAALGLYELSRRRERG
                     EQPSAWDALDVLQSPSFGAMLGLGTLLFALFVTWVATAQAIYIAVFGYQGPASASDFV
                     QRVLTTPQGWWLIVVGCGVGFLFALVALCISVVSFPLMLDRHATAGEAMVTSMRVAAK
                     NPVTIAAWGLIVAVLLVVGSLPFFLGLAVVIPLLGHATWHLYRKAVAIDPNARPIPPR
                     PPHVRKPAADFPANLFPWKRSDDT"
     gene            complement(1637..>1919)
                     /locus_tag="VEQ16_10140"
     CDS             complement(1637..>1919)
                     /locus_tag="VEQ16_10140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64240.1"
                     /translation="SLCAATALSRIGATSTVRAGAADAGAADDDALDDDGAVDDGAAD
                     DGVLAAGPPGTVAPGAAPPLAGVAAAWPKIPLMIFPKTLIDCSHDYEIV"
BASE COUNT          402 a          617 c          611 g          289 t
ORIGIN      
        1 ggcctcgttc ttgaactcgc caagccaggc ttcgaaattg ccggtaccgc aggacgccgc
       61 gaacgccggc aagccgggca gcgtcagggc agtggcaagg atgatgtatt tcaggagacg
      121 aacggtcatc aaaagtacca gcggcaagaa cgactcaaca aatgaccacg gctactctca
      181 gcaccgacca cggcgagaga caaggccaac ctctcacggc atggaacgcg tggcgagtgc
      241 gccataatca ctttgcgggg aagtgcggcg cgcggaaccg ccggtttctt cgcgcccacc
      301 ccgcactggg atggcggggt ggggtgtatg cttccttctc tcttgaagcg gcggcctaag
      361 tgtcgtcgct gcgcttccac gggaacaaat tggcgggaaa atccgcggcc ggcttccgca
      421 catgcggcgg gcgcggcggg atcggacgtg cattcggatc gatcgcgacc gccttgcgat
      481 agagatgcca ggtggcgtgg ccaagcagcg gaatgaccac ggcgagcccc aggaaaaacg
      541 gcagcgagcc cacgaccagc agcaccgcca cgatcaggcc ccaggctgcg atcgtgaccg
      601 gatttttcgc cgccacgcgc atcgaagtga ccatggcctc gcccgccgtg gcatggcggt
      661 cgagcatgag ggggaatgag accacgctga tgcacagcgc caccagagcg aacagaaagc
      721 cgacgccgca gccgaccacg atcagccacc atccctgcgg cgtggtgagc acccgctgga
      781 cgaaatccga agcgctggcc gggccttgat agccgaacac cgcgatatag atcgcctgcg
      841 cggtcgcgac ccaagtgacg aacaacgcaa acaacaaggt gccaagcccg agcatggcgc
      901 caaaggaggg cgactgcagc acgtcgagcg catcccaagc ggatggttgc tcgccgcgtt
      961 cacggcgcct gctcaattcg taaagaccga gcgcggcgaa gggtccgagc aaggcgaagc
     1021 cggcggccag cgggaacagc agcggaatca cggcgtagcc aagcactgcg cgcgccagga
     1081 tcaacccgag gaccggatag atcgcgcaga ggatgatggc atggctcgga acggccttga
     1141 aatcctccca gccgagccga agcgcctcct gcagatcgga gaggctgatg gtgcggatga
     1201 caggttcagc ctcttccacc ggctgaacgc tggagacatt gctgtgatac gtggccatgg
     1261 ccgtaactcc cttgactccc ttgccgcggc ggccgtttct tgccgcgccg ggcgagggcg
     1321 caaacggcca tctgccgaat tgatcacgat catggccgga tgcgaagcct gtttgccgaa
     1381 acctgtctgc cgaaactgtt tgccatgccg cgaaccgagg aatcagcata ctcctaaagc
     1441 ccgcgatcgt cgctcacgcc tgggtgaaaa aatgatgccg cagcgcaaac ggcgaggcgt
     1501 cattccgctg tcatcgtctc ggccaggctg tcttcgagtc attggccggc gttggcaagt
     1561 gcaggcggga cagctaaatt ccgccgcgcc gccgcccttt gcgccgccgc gataaatggg
     1621 aacctgtcca gtcctttcaa acgatctcgt aatcatggga gcaatcgatg agtgtctttg
     1681 gaaaaatcat gagcgggatt ttcggccatg ctgccgccac gcccgcaagc ggcggcgccg
     1741 cgcccggcgc aacggttccc ggcgggcccg ccgcaagcac accatcatcc gctgcgccat
     1801 cgtcaaccgc gccatcatcg tcgagcgcat catcgtctgc ggcgcccgca tcggccgcgc
     1861 cggcgcggac ggtcgaggtc gcgccgatcc tcgacaaggc ggttgccgcg cataaggag
//
LOCUS       DASQCV010000649         6670 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2128680, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000649 DASQCV010000000
VERSION     DASQCV010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6670
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2128680"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..547)
                     /gene="cysD"
                     /locus_tag="VEQ16_10145"
     CDS             complement(<1..547)
                     /gene="cysD"
                     /locus_tag="VEQ16_10145"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020592479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HYP64241.1"
                     /translation="MDAVTDTVTLTHLQRLEAESIHIMREVVAETEKPVMLYSVGKDS
                     AVMLHLARKAFYPSPPPFPLLHVDTTWKFKAMYELRDRMAKESGMELLVYQNPEAKAK
                     GINPFDHGPLHTDMWKTEGLKQALDLYGFDAAFGGARRDEEKSRAKERIFSFRSANHR
                     WDPKNQRPELWNLYNARKAKGE"
     gene            complement(853..1755)
                     /gene="lpxC"
                     /locus_tag="VEQ16_10150"
     CDS             complement(853..1755)
                     /gene="lpxC"
                     /locus_tag="VEQ16_10150"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HYP64242.1"
                     /translation="MTAPAPRCTLKAAISAVGRGLHSGADVTMALKPAGVGAGISFRR
                     TDLGLDIPARFDHVADTRLCTVLAEGEARVGTVEHLMAALLAAGIDDVIVEVDAPELP
                     VFDGSAAPFLFLIESAGVVEHGGLRAQLEILRPVRIEQNGAFAELRPHHDGGAGFDVS
                     LSIEFAAEAIGAQAYHFHLSAEGFAEEIAAARTFTQLGEIEALHKAGLAKGGSLANAI
                     VVDGAKVMNPEGLRFADEFVRHKLLDVLGDLALAGVPISGRFIGGRTGHALNNQLLCA
                     LFADQGNYRLVTGLVAAPEQLTAA"
     gene            complement(1892..2782)
                     /locus_tag="VEQ16_10155"
     CDS             complement(1892..2782)
                     /locus_tag="VEQ16_10155"
                     /inference="COORDINATES: protein motif:HMM:NF036967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel"
                     /protein_id="HYP64243.1"
                     /translation="MKTPRHRRKQSPLPLSAEALRRIERRGVTRHGLQDLYYNLMTMP
                     VPALFGVLAGYFLFTIMLSAIILHFTGGLGGNTHGSFGDAFFFSVQTLSTTGYGDIYP
                     VTMTANIIASVGMVLGQLNTAIAIGVLFARLSRPRPRVLFSNVLVTREVNGVRRIMFR
                     VGNERRSEISAAHISVVLISDEDDGDGGIMRHLLPLRLERDFSPVFSLSWLVIHEITE
                     DSPLWGRDHEVMARKGNVLVCSLTGTDDAINVSVSARHVYGAEDVRAGHRFVDVISRG
                     ENGEMSIDYSRFHDTVHCST"
     gene            2882..3202
                     /locus_tag="VEQ16_10160"
     CDS             2882..3202
                     /locus_tag="VEQ16_10160"
                     /inference="COORDINATES: protein motif:HMM:NF014019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HYP64244.1"
                     /translation="MIVVTTENIANHRVRETLGQVFGVVVRSRGLGGNLMAGLRSIVG
                     GEIVEYTRMLEEARRHAIDRMVENAKLMGANGIIMLRFDSSEMGQTMSEIVAYGTAVI
                     LEPV"
     gene            3202..3492
                     /locus_tag="VEQ16_10165"
     CDS             3202..3492
                     /locus_tag="VEQ16_10165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64245.1"
                     /translation="MLRTIVLSLGVLLMVAGVLGITVGDGRATLLPLIFGVLLLIGTV
                     FEPYYKRNQTAAPNGGFIATGERFFDPTQGGVVEVWYNEKSGERRYILTEAK"
     gene            complement(3630..5174)
                     /gene="ftsZ"
                     /locus_tag="VEQ16_10170"
     CDS             complement(3630..5174)
                     /gene="ftsZ"
                     /locus_tag="VEQ16_10170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019091236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HYP64246.1"
                     /translation="MVLHLSIDKPTHTDFTPRITVFGVGGGGCNAVNNMIQLNLPGVD
                     FVVANTDAQQLQRSLAEKRIQLGPHLTQGNGAGGRPDVGKLSADEAAEELARHLENTH
                     MVFITAGMGGGTGTGAAPVIARMARERDILTVGVVTKPFAFEGKRRMRAAEEGIIEMQ
                     AYVDTLIVIPNQNLFKVANERTGWKEAFEMADNVLYMGVRGITDLMVMPGMVNLDFAD
                     VRSVMREMGKAMMGTGEAEGDDRAIRAAEAAISNPLLEDTNMKGARGLLINITGSSDV
                     TLFEIDQAANRVKEEVDADANIMFGMSMDETMGGRLRVSVVATGIDSMPQAMPSLKVV
                     NGGEPVQFPSAVSGQSVSQQGATQAPAARQAGYVPEPPAVPLVSKAYIDRGHEIALGA
                     QEAVAAPAAVVAATAEMVAQIVQPAPTAAQAQHAPRTASRPASPAAVAPTPVRVPEAP
                     KTGGSIFKSVFGFGASKQAAPAHAHHRQEPAIQAEPQAEARPAVRPAQIDEVGLEIPA
                     FLRRGP"
     gene            complement(5223..6527)
                     /gene="ftsA"
                     /locus_tag="VEQ16_10175"
     CDS             complement(5223..6527)
                     /gene="ftsA"
                     /locus_tag="VEQ16_10175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HYP64247.1"
                     /translation="MNSMTRRPPVLDGITRPDEPVRNRTIRSGPFGVLDIGSSKITCM
                     IGRGESDGRLRCLGFGWQKSRGIKSGGIVDLDEAEKAIRAAVGAAEDQADTRLKSVLV
                     NLSCGAPESRLFNVQWPVDGRAVTADDIRRVVREARHRASADGRAVIHALPLSFATDE
                     TAGVTDPRGLFCDILTAQLHVVDAGNTALRTLAACLARCELDIAALVSAPLASGLASL
                     VGDERELGATLIDMGGGTTTMAVFSEGQILHTAQLPVGGHHVTTDIAKGLSTSIAHAE
                     RLKALYGNCHGSPDDQRELLPVPLVGEAEHQIAQMPRSHLIGCIRPRLEEIFEMVKDR
                     LEMAGLGREGASRVVLTGGASQLGGVRELASQILERQVRLGRPGPVIGLPDSASGPGF
                     ATLVGLLAFATGDGQTMHDIDFDAERGQSWFGKIVDFLKNRV"
BASE COUNT         1368 a         2143 c         1944 g         1215 t
ORIGIN      
        1 tctcgccctt ggccttgcgc gcattataga gattccacag ctccggacgc tgattcttag
       61 ggtcccagcg atggttggcg gatcggaacg agaagatgcg ctccttggcg cgggacttct
      121 cttcatcccg gcgcgctcca ccgaaggcgg cgtcgaaacc gtaaagatcg agcgcctgct
      181 tgagaccttc cgtcttccac atgtcggtgt gcagcgggcc gtgatcgaac gggttgatgc
      241 ctttggcctt ggcttccggg ttctggtaga cgagcaactc catgccgctc tctttcgcca
      301 tgcggtcgcg caactcgtac atggccttga acttccacgt ggtatccacg tgcagcagcg
      361 ggaaaggagg cggggacgga taaaatgcct tgcgcgccag gtgcagcatc accgcggaat
      421 ccttgcccac ggaatagagc atcaccggct tctccgtctc ggcgacgacc tcacgcataa
      481 tatggatcga ttcagcctcc agacgctgca aatgcgtcag tgtcaccgta tcagtcacgg
      541 catccattca acccgtctcc ttacccaaca cttcaactta cgctggataa tccagcatgc
      601 atggggggtt tctttgcatg gcgtatgtgg acaagcaaac ataaaagaca caccaaaacg
      661 gccaaaacat cacgtacaag ccatggaact atgggtctga ggggatatgg agcaaaaaat
      721 ttgacgtgaa ccccctgatt caggtcactg ttttgtatgt ctatttattt accatagatt
      781 aaatagaata tattcccaag aatatctgga gcgcattcat tgcagccccg atcaagccgt
      841 ggaaagcgcc tgtcaggcgg cggtcagctg ctcaggcgcg gcgacaagcc ccgtaaccag
      901 ccggtaattg ccctggtcgg cgaacaaggc gcacagcaat tggttgttca gcgcatggcc
      961 ggtacggcca ccaataaagc ggccggaaat gggtacgccg gccaaagcca gatcccccag
     1021 aacgtcgagc agtttatggc gaacgaactc atccgcgaag cgcagcccct cggggttcat
     1081 caccttggca ccgtcgacga cgatggcatt ggcaagcgag ccgcccttgg ccagcccggc
     1141 cttgtgcaaa gcctcgatct cgccaagctg ggtaaaggtg cgggccgcgg cgatctcttc
     1201 cgcaaaccct tcggccgaga gatggaaatg ataggcctgg gcaccaatgg cttcggccgc
     1261 gaattcgatg gagagcgaaa catcgaaccc tgccccgcca tcatgatgcg ggcgcaattc
     1321 ggcgaaggca ccattctgct caatccgcac cggacgcaga atttccagct gcgcgcgcag
     1381 gccgccatgc tcaaccacgc cggcgctctc gattagaaac aggaagggcg cggccgagcc
     1441 gtcgaacacc ggcagttccg gcgcatccac ttcgacgatc acatcgtcaa tgccggccgc
     1501 cagcagggcc gccatcagat gctccaccgt gccgacgcgg gcctcgcctt ccgccagaac
     1561 ggtgcataaa cgcgtatcgg ccacatggtc gaagcgcgcg ggaatatcga gcccgagatc
     1621 ggtacggcgg aaggaaatcc ccgcccccac gccggccggc ttcagcgcca tggtcacatc
     1681 cgcgccgcta tgcaagccgc gtccgacagc cgaaatcgcc gctttcaacg tacaccgggg
     1741 ggcgggagcg gtcatggcca agctgtatct ttcacgcagg gacgacatgt agactccggc
     1801 ttattaaccg agccttatat atcccgcccg gcggagcccc cgccagtcaa tcattatttc
     1861 tgattatgtc gccacaagta tctgatttta cttaagtgct gcagtgcacc gtatcgtgaa
     1921 aacggctata atcgatgctc atctcgccat tctcgccgcg tgagatcaca tcgacaaaac
     1981 ggtgcccagc acgcacatcc tcggcgccat agacatgccg ggcggagacg gagacattga
     2041 tcgcatcatc cgtgccagtg agtgagcaga ccagaacatt gcccttgcgg gccatcacct
     2101 catggtccct accccagagc ggactgtctt cggtgatttc atgtatcacc agccaggaga
     2161 gggaaaacac cggcgagaaa tcgcgctcca gccgcaaagg cagcaagtgg cgcatgatgc
     2221 caccatcgcc atcatcctcg tcactgatca gcaccacgct gatatgggcc gcagagattt
     2281 cactgcgcct ctcattgcca acccggaaca tgatccgcct tacaccgttc acctcgcgcg
     2341 tcaccagcac attgctgaac aaaacacgcg ggcgcggccg cgagagacgc gcgaacagca
     2401 caccgatggc aatcgcggta ttgagctggc cgagcaccat gccgacagag gcgatgatat
     2461 tggcagtcat tgtgacagga taaatatcgc catagccggt ggtggaaagg gtctgcaccg
     2521 agaagaaaaa cgcatcgccg aaactgccat gcgtgttgcc gcccaggcca cccgtaaaat
     2581 gcaggatgat ggcggacagc atgatggtga agaggaaata gccggccaac accccgaaca
     2641 gggccgggac cggcatggtc atgaggttat aatataaatc ctgcagcccg tgccgcgtaa
     2701 cgccccgccg ctcgatccgg cgcaaagcct cggcggaaag cggtagaggc gactgtttcc
     2761 tgcggtggcg cggtgttttc atggtgcgat cctgccaaag cggaaccagc cccacaagca
     2821 gcacggccat tgcggcgcgt caacagaaat gctctgctgc ggcttgcgga gggaactaca
     2881 catgattgtc gtgacgacgg aaaatatcgc caatcaccgt gtcagggaaa cgctcggcca
     2941 ggttttcggc gtcgttgtac gctcgcgcgg cctgggcggc aatctcatgg cggggctacg
     3001 ctcgatcgtg ggcggcgaga tcgtggaata tacccgtatg ttagaagagg cacgccgcca
     3061 tgccatagac cgcatggtag agaacgccaa gctgatgggg gccaatggca tcatcatgct
     3121 acgcttcgac agttcggaaa tgggacaaac catgagcgag attgtcgcct atggcacggc
     3181 ggtgattttg gagcctgtgt gatgttgcga accattgttc tgtctcttgg cgttctgctg
     3241 atggtcgcgg gtgttctggg catcaccgtg ggcgacggac gggctacgct cttgccgctg
     3301 attttcggcg tgctgctgct catcggcacg gtgttcgagc cttattacaa gcgcaaccag
     3361 actgctgcgc ccaatggcgg gtttatcgcc acgggcgagc ggttttttga tccgacccag
     3421 ggtggtgtgg tcgaggtatg gtataatgag aagagcggtg aacggcgcta catcctaact
     3481 gaagcgaagt aagaggctgc ttttttgtaa taaagcggcg taaaaaactt tcgcgctttg
     3541 ggccgttgct tttggcgcca tagggcaccc ccacgcacaa aaaaggccct gcattgcagg
     3601 gcctttttta aatcaacagc gtggaaacct tacggcccgc ggcgcaagaa ggccggaatt
     3661 tccagcccca cctcgtcaat ctgcgccggg cgcacggccg gacgcgcctc agcctgcggc
     3721 tcggcctgga tggccggctc ctggcgatga tgcgcatggg ccggcgctgc ctgcttgctg
     3781 gcgccaaagc caaacactga cttgaagatg ctgccaccag tcttgggcgc ttccggcaca
     3841 cgcaccggcg tgggcgccac ggcagccggg ctggcagggc gcgaagccgt acgtggcgcg
     3901 tgctgggcct gcgcagcggt cggggcgggc tggacaatct gcgccaccat ctcggcagtg
     3961 gcggcaacaa ccgcagcagg cgccgcaaca gcctcctgcg cgccgagcgc gatttcatgc
     4021 ccgcggtcga tataggcctt cgagaccagc ggcactgccg gcggctccgg cacgtaaccg
     4081 gcttggcgcg ccgccggcgc ctgggtggcg ccctgctggc tcacgctctg gcccgacaca
     4141 gccgagggaa actgcaccgg ctcgccacca ttcaccacct tcaggctcgg catagcctgc
     4201 ggcatggaat cgatgcccgt cgccaccacg gacacgcgca ggcgcccgcc catggtctcg
     4261 tccatcgaca tgccgaacat gatgttggca tcggcatcga cctcttcctt cacacggttc
     4321 gccgcctggt cgatctcgaa cagcgtcaca tcggagctgc cggtgatgtt gatgagcagc
     4381 ccacgcgcgc ccttcatgtt ggtgtcttcg agcagcgggt tggaaatcgc cgcctcggcc
     4441 gcgcggatgg cgcggtcatc gccctcagcc tcgcccgtgc ccatcatagc cttgcccatc
     4501 tcgcgcatca cgctgcgcac gtcggcaaag tccaggttca ccatgccggg catcaccatc
     4561 aggtcggtaa tgccgcgcac gcccatatag agcacgttat cggccatctc gaacgcctct
     4621 ttccagccgg tgcgctcatt ggcgaccttg aagagattct ggttcgggat gacgatcagc
     4681 gtatccacat aggcctgcat ctcgatgatg ccttcctccg cggcgcgcat gcggcgcttg
     4741 ccctcgaagg cgaaaggctt ggtgacgacg ccaacggtga gaatgtcacg ctcacgcgcc
     4801 atgcgcgcga tgaccggcgc cgcccccgtg ccggtgccgc cgcccatgcc agcggtgatg
     4861 aacaccatat gcgtgttctc gagatgccgc gccagctctt ccgccgcctc atcggccgaa
     4921 agcttgccga cgtccggccg cccgccggcg ccattgccct gcgtcagatg cggcccaagc
     4981 tgaatccgct tttccgccaa gctgcgctgc agctgctgtg catccgtatt cgcaacgacg
     5041 aaatcaacgc caggcagatt caactgaatc atgttgttga cggcattgca accaccaccg
     5101 ccgacaccga acaccgtgat gcgcggggtg aagtccgtgt gcgtgggttt gtctatcgac
     5161 aggtgcaaaa ccattatttt ctctcctcag ccgataccgg taaagaacgc tccgatttca
     5221 tgtcaaacac gatttttcag aaaatcgacg attttgccga accagctctg gccgcgctcg
     5281 gcgtcgaaat cgatatcatg catggtctgg ccatcgccgg tggcaaaggc gagcagcccg
     5341 accagcgtgg cgaaaccagg gccggatgct gaatccggca ggccgatgac cggaccgggc
     5401 cgccccagcc gcacctgccg ctccagaatc tgcgaggcca gctctcgcac gccgcccagc
     5461 tgcgaagcac cgcccgtgag caccacccgc gaggcccctt cccgcccaag acccgccatc
     5521 tccagccggt ccttcaccat ctcgaagatt tcctcaagcc gcgggcggat gcagccgatg
     5581 agatgcgagc gcggcatctg cgcgatctga tgttccgcct ccccaaccag cggcaccggc
     5641 agcaattcac gctggtcatc cggcgaacca tggcaattgc cgtaaagcgc cttcaaccgc
     5701 tccgcatgcg caatggaggt ggagaggccc ttggcgatgt ccgtggtgac gtgatgcccg
     5761 cccaccggca actgcgccgt gtgcagaatc tgcccttcgg aaaacaccgc catggtcgtg
     5821 gtgccgccac ccatatctat aagagtagca cccagctcgc gctcatcgcc caccaggctg
     5881 gccagcccgg atgccaatgg cgcagagaca agggccgcaa tgtccagctc gcagcgggca
     5941 agacaggccg ccaatgtgcg cagagccgta ttgccagcat ccacaacatg cagctgcgcg
     6001 gtaagaatat cgcagaacag gccacgcgga tcagtgacac ccgccgtctc gtcagtggca
     6061 aaactcaaag gcaaagcgtg gatcacggcg cggccatccg cactcgcgcg atggcgtgct
     6121 tcccgcacga cgcggcgtat gtcatcagcc gtcacggcgc gcccatccac cggccattgc
     6181 acattgaaca agcgggattc tggcgcgccg cacgagagat tgaccagcac cgatttcagc
     6241 cgcgtatcgg cctggtcctc cgcagccccc accgcggcgc ggatcgcctt ctccgcctca
     6301 tccaggtcga caatgccgcc ggatttgatg ccccggctct tctgccagcc aaagccaagg
     6361 caacgcagcc ggccgtcgga ctccccgcgc cctatcatgc aggtgatttt cgacgaaccg
     6421 atatccagca cgccgaacgg tccggagcgg atggtacggt tccgtaccgg ctcatccggc
     6481 ctggtgatac cgtcaagaac gggcgggcgg cgcgtcatgc tattcatggg caggctccgt
     6541 cttcttagcc tccgccttct tgcccggcgc cgtcttggcg tctgccgggg gcgcgggcgg
     6601 ggcatagggg cgtatcacca gacgtccaga ctggcgcaga tcaatattct ccaccgggcg
     6661 gtcgagcagt
//
LOCUS       DASQCV010000650         1737 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2294053, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000650 DASQCV010000000
VERSION     DASQCV010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2294053"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1479)
                     /locus_tag="VEQ16_10180"
     CDS             complement(<1..1479)
                     /locus_tag="VEQ16_10180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HYP64248.1"
                     /translation="MPILPPLPALAAGHGRAVLMGADGTLAPVKPGNVAKQLGGQKAL
                     VVHGPATLNRLGNPVIELLDILELFAFVCPAQSLAPTPAGVARALELEVPGSLEEAAA
                     SLAEMAEILLARLAAGKDTPLNRDAAGLAARMGSQGWGWAPYVLAALGQPAARPDGMA
                     MRLWKRLPKWEETAPRPPPSSFPVTPAQARARLATLLGEGAEQRPAQADYASAATEAF
                     APRALEDHPHAVIAEAGTGTGKTMGYLAPASIWAEQNKGAVWISTFTRHLQRQIEQEA
                     RRLPSGTKIVLRKGRENYLCLLNFEDAASVDRYAVPLGLIARWAMVSADGDLFGGDLP
                     GWFAELFGNALLSSIADRRGECIHAACPHFSVCVIERVIRNAREAELVIANHALVMAQ
                     AVWGGLDDDYVPTRYVFDEGHHIFDAADSAFSVELSGSAMAELRRWLLGAEGARSRAR
                     GLAKRLEDVIAGDQRAIDLVQVVREGAKSLPAPMFSMRLDPEL"
     gene            complement(1553..>1737)
                     /locus_tag="VEQ16_10185"
     CDS             complement(1553..>1737)
                     /locus_tag="VEQ16_10185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64249.1"
                     /translation="LSAFRACATGVNTGGFVEDNYLDLLPADAASQAWRISCGTDGAM
                     VEAIAERLGALGLPRI"
BASE COUNT          325 a          685 c          478 g          249 t
ORIGIN      
        1 caactccggg tccagccgca tggaaaacat cggcgccggc agagattttg cgccctcgcg
       61 caccacctgc accaaatcga tggcgcgctg gtcgccggca atcacatcct ccagccgctt
      121 cgccagccca cgcgcccgcg agcgcgcccc ttccgccccc agcagccagc gccgcaactc
      181 cgccatggcc gagccagaca attccacgga aaacgcggaa tccgccgcgt cgaaaatatg
      241 gtgcccctca tcgaacacat agcgcgtggg cacataatca tcatccagcc cgccccacac
      301 cgcctgcgcc atcaccagcg catggttggc aatcaccagc tccgcctcac gcgcattgcg
      361 aatcacgcgc tcgatcacgc acacggaaaa atgtgggcat gccgcatgaa tgcactcgcc
      421 gcgcctatcc gcaatggaag acagcaaggc attaccaaac aattccgcaa accaccccgg
      481 cagatcgccg ccgaacagat caccatccgc gcttaccatc gcccatcgcg caatcagccc
      541 cagcggcacg gcatagcggt ccacgctggc cgcatcttca aaattcagca ggcaaagata
      601 attctcccgc cccttgcgca gcacaatctt cgtccccgaa ggcagccgcc gcgcctcctg
      661 ctcaatctgc cgctgcaaat gccgggtaaa cgtggaaatc cacaccgcgc ccttgttctg
      721 ctccgcccat atggaggccg gggccagata ccccatcgtc ttccccgtgc ccgtccccgc
      781 ctcggcgatg acggcatgcg gatggtcctc cagcgcgcgc ggcgcaaagg cctccgtcgc
      841 ggccgaggca taatccgcct gcgccggccg ctgctccgcg ccctcgccca gcagcgtggc
      901 caaccgcgcc cgcgcctgag ccggcgttac agggaaagac gaaggtggcg ggcgcggcgc
      961 cgtctcctcc catttcggca gacgcttcca tagccgcatg gccatgccat ccggccgcgc
     1021 cgccggctgg ccgagggccg ccagcacata aggcgcccag ccccagccct ggctccccat
     1081 ccgcgccgcc agtcccgccg catcacggtt gagcggcgta tccttgcccg ccgccagccg
     1141 cgccagcaga atctccgcca tctccgccag actggccgcc gcctcctcca aactccccgg
     1201 cacctccagc tccagcgccc gcgccacccc ggcgggcgtg ggggcgaggc tctgcgccgg
     1261 gcagacaaag gcgaaaagtt ccagaatatc cagcagctcg ataaccggat tacccagcct
     1321 gttgagcgtc gccggcccat gcaccaccag cgccttctgg ccgcccagct gcttggccac
     1381 gttccccggc ttcaccggcg ccagcgtgcc atccgcgccc atcagcacgg cgcggccatg
     1441 accggcagca agcgcgggca gaggcgggag aatcggcatc ctgctgtttt atacgggcac
     1501 gttcacggtt tgtcttgccc cggcgccgtt ttttgcaccc tgcggacgct acctagatac
     1561 gcggcagccc caaggctccg agccgctccg cgatggcctc caccatggcc ccgtccgtgc
     1621 cacaggaaat gcgccaggct tggctggccg cgtcagcggg gagaaggtcg agataattat
     1681 cctcgacaaa tccaccggta ttcacccccg tggcgcaggc gcggaaagcg gaaagcg
//
LOCUS       DASQCV010000651         1607 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2956481, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000651 DASQCV010000000
VERSION     DASQCV010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2956481"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..403
                     /locus_tag="VEQ16_10190"
     CDS             <1..403
                     /locus_tag="VEQ16_10190"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYP64250.1"
                     /translation="CHVGGVLGYGAYAGKKDEVHAAWRASMAELATCPNVSVKLGGML
                     NRGAALNFRELPAPPNSEAWAAAWRPYVETCIELFGADRCNFESNFPVDKMGTGYAVL
                     WNAFKRITAGCSQSEKLALYSGTAKQLYHLG"
     gene            580..>1607
                     /locus_tag="VEQ16_10195"
     CDS             580..>1607
                     /locus_tag="VEQ16_10195"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYP64251.1"
                     /translation="MKFSFSSEQEEFRSNLRRFLTDRSPTKEVRRLMQTDDGYERDGW
                     RAINAELGLTAVRIPEAYGGQGFGFGEQCIVLEEMGRALLCAPFFGTAVLAAGAILNA
                     GTEAKKQALLPGIAAGETIATLAWVEDNGRWDVEGTALTATTMGGGSVLNGHKTYVVD
                     GHTADLIVVLARAPQGLSLFTVDGNAAGLIRRSLKSMDPTRKFARLEFDGVAAQPLGA
                     AGGAAVPFARTMIEAAVCLANEMVGGADRLREDALAYSMMRMQFGKPIASFQSMKHKQ
                     ADMLLEVELAKSAAYYAAASLDDGDDNAVANAHLAKACAGDTYMQTAIHAVQIHGGIG
                     FTWDNDTHL"
BASE COUNT          291 a          471 c          536 g          309 t
ORIGIN      
        1 gtgccatgtc ggcggcgtgc tcggctacgg cgcctatgcc ggcaagaagg acgaggttca
       61 tgccgcgtgg cgggccagca tggcggaatt ggccacgtgc ccgaacgtct ctgttaagct
      121 gggcggcatg ctgaaccgcg gcgccgcgct caacttccgc gaacttccgg cgccgccgaa
      181 ttccgaagcc tgggccgcgg cctggcggcc ctatgtcgag acctgcatcg agttgttcgg
      241 tgcggatcgc tgcaatttcg aaagcaattt tccggtcgac aagatgggca ctggctacgc
      301 ggtattgtgg aacgcgttca agcgcatcac cgccggatgc tctcagagcg aaaagctcgc
      361 cctctacagc ggcacggcca aacagcttta ccacctcggc tgatgaatat cgattttcgt
      421 ggtgcgtcgc gctctgggca agatcgagta ggaggctggt gtcgcatggc tgcgcgagaa
      481 acgcgctgcg gccgatccgc tgcgttatgc cggtgtcccc agatctggcg gtaagcagcg
      541 gccccgattt tagctctgac acgcagagag gagcgctccg tgaagttcag tttttcaagc
      601 gagcaggagg agttccggtc caacctgcgc cgcttcttga cagaccgttc gccgaccaag
      661 gaagtgcggc gattgatgca aactgacgat ggctatgaac gcgacggctg gcgggcgatc
      721 aacgccgaac tcggcctgac tgcggtccgt atcccggaag cctatggtgg ccagggtttc
      781 ggttttggtg aacagtgcat agtgctggag gaaatggggc gcgccctgct ttgcgcgcca
      841 ttctttggga cggcggtgct ggccgctggt gccatcctga atgccgggac cgaggcgaag
      901 aagcaggcgc tgctgccggg gatcgccgca ggcgagacga tcgcgactct tgcctgggtg
      961 gaggacaatg ggcgctggga cgtcgagggc acggcgctta ccgcgaccac catgggcggc
     1021 gggtccgtgc tgaacgggca taagacctat gtggttgacg gccacaccgc cgacctgatc
     1081 gtcgtactgg cgcgtgcgcc ccaaggcctg tcgctgttca ccgttgatgg caacgcggct
     1141 ggtctgattc gccgctccct gaaatccatg gacccgacac ggaaattcgc acgcctggag
     1201 tttgatggcg tggcggcgca gccacttggt gcggccggcg gtgccgcggt cccgttcgcc
     1261 cgcacgatga ttgaggccgc agtctgcctg gccaacgaaa tggtcggcgg cgcggaccgg
     1321 ctgcgcgagg atgcgctggc ctattcgatg atgcgcatgc aattcggcaa gcccatcgct
     1381 tcgttccagt cgatgaagca taagcaggcc gatatgctac tcgaggtcga actggccaag
     1441 tcggccgcct attacgctgc tgcctcattg gatgatgggg atgataacgc ggtagccaac
     1501 gcgcatctcg ccaaagcttg tgctggcgat acgtatatgc aaaccgccat tcatgcggtg
     1561 cagatccatg gcggcatcgg gttcacctgg gacaatgaca cgcatct
//
LOCUS       DASQCV010000652         4890 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3287366, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000652 DASQCV010000000
VERSION     DASQCV010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4890
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3287366"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..302)
                     /locus_tag="VEQ16_10200"
     CDS             complement(<1..302)
                     /locus_tag="VEQ16_10200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64252.1"
                     /translation="MLAAIGFLAVAFAVNDLFAATETTVLRRQRAGLMSAALTGALAQ
                     TSLIAAAPYGVVALDQALAGIVTLSFIAIPAQFWPVICRIREGQMKIVNRRLLNRTR"
     gene            complement(443..853)
                     /gene="acpS"
                     /locus_tag="VEQ16_10205"
     CDS             complement(443..853)
                     /gene="acpS"
                     /locus_tag="VEQ16_10205"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HYP64253.1"
                     /translation="MILGLGSDICDIRRIERALERHGERFTQRVFSEVERARAEKRAG
                     QAASSYAKRFAAKEACAKALGTGFRDGVFLSDLRVVNLPSGQPTLSLHGAALERLRAM
                     TPAGYEARVYLSLTDEYPYAYAQVIISAEPLAAG"
     gene            complement(850..3114)
                     /locus_tag="VEQ16_10210"
     CDS             complement(850..3114)
                     /locus_tag="VEQ16_10210"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HYP64254.1"
                     /translation="MRTGCLELSLSYAPEGVGGGTGKFHPELAPLLSRVAAYDPKADP
                     AFIDDAYDAAMQAHEGQKRDNGEAYITHPLAVANILAGYRLDVASIVTAILHDTVEDT
                     SFTLNEVRTRFGPEVAGLVDGVTKLTRLELQSDRTKQAENFRKLVLAMSKDIRVLIVK
                     LADRLHNMRTIGAISAAHKRQRIARETMDIYAPLAERIGMEAVKTELLTRSFAEIDPE
                     AYESIQARLNFLRGQGADVIEEVRQELTKVCLDAGVKTADIAGREKSPYSIWQKMQRR
                     NVAFEQLSDIMAFRIIVPTRGDCYVALGAIHAAYPVIAGRFKDYISTPKANGYQSLHT
                     GVTLRQPRNQKIEIQIRTPEMQAVAENGVAAHWLYKQDDASASDVKKFRWVQDLLEIL
                     ENSAAPDEFLENTKLELYQDQVFCFTPKGQLIQLPRGATSVDFAYAVHSQIGDTCVGA
                     RINGRLMPLRYELQNGDQVEILTARGGTPSPQWERFVVTGKARARIRRFLAQQMRDQH
                     RDAGKSLLAKAFRQDGVDGSEKVLEPIAKQFKQASVDDLYVAVATGIVGPKDVVHAAY
                     PELRGGGAPRMLPAFIGTGLSARSPRNNILRAESNMPVTGLVAGMDVHYAGCCHPLPG
                     DKIVGIVTTGKGVTIHAKDCTTLDGFAATPERFIDVDWDNAAIARMEPKNSKFVGRIS
                     VIASNSPNALANLTNAVSQQGGAIANLKITHRQQDFFETIVDVEVRDTRHLNQVIAGL
                     RGAASIAQVERAKA"
     gene            complement(3120..3527)
                     /gene="rpoZ"
                     /locus_tag="VEQ16_10215"
     CDS             complement(3120..3527)
                     /gene="rpoZ"
                     /locus_tag="VEQ16_10215"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HYP64255.1"
                     /translation="MARVTVEDCVLKVPNRFELVLLAAQRARNISRGEQLTIDRDNDK
                     NPVVALREIADETVGLPDLEADLVKSLSRVPEPEPVDEEVIDLIPTEQNIFGLQDVSA
                     EEEAAAMAAEAEEMSPEDIQAAIEAELGGKSRR"
     gene            complement(3677..4180)
                     /gene="folK"
                     /locus_tag="VEQ16_10220"
     CDS             complement(3677..4180)
                     /gene="folK"
                     /locus_tag="VEQ16_10220"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HYP64256.1"
                     /translation="MILVAIGANLPGPDGVSARESCAEAAEAVRAIEGLEFVALSPWY
                     RTRPIPAASQPDYCNGMIRLEGDIAPDALLARLQEIEGRFGRARGEVNAARTLDLDII
                     DLNGIIRAVPDPILPHPRAHLRAFVLRPLLDVAPGWRHPVLRQSIATLLAELPPQGIT
                     PWADEEL"
     gene            4307..4885
                     /locus_tag="VEQ16_10225"
     CDS             4307..4885
                     /locus_tag="VEQ16_10225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010667773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HYP64257.1"
                     /translation="MIRFSTQERTALFIDGANLYAATRSLSFDIDYRRLLEFFGTKTN
                     LLRAYYYSALLETEDYSPLKPLTDWLAYNGYSLVTKPAKEFTDAMGRRRIKGNMDIEL
                     AIDMLELTPHMDHAILFSGDSDFRRLVEAVQRKGVRVSVVSTIKTSPPMIADELRRQA
                     DQYIELADIAPEFTRKPSDSRPRTPNRDDDFA"
BASE COUNT          980 a         1574 c         1419 g          917 t
ORIGIN      
        1 cgcgtccggt tgagcaaacg gcgattgacg attttcatct gcccctcacg gatgcgacag
       61 atgacgggcc agaactgcgc cggaatcgca atgaaagaca gagtgacaat gcccgccagc
      121 gcctggtcga gcgccacaac gccataaggt gctgcggcaa tcagactcgt ctgcgccagc
      181 gcgccggtga gtgccgcgct catcagcccc gcgcgctggc gccgcagcac cgtcgtctcc
      241 gttgcggcaa ataaatcatt cacggcaaac gccaccgcca gaaagccaat ggccgccaac
      301 atatccggga tcaccattaa cgagatcatg ccgcccaccc caaaagactt caaaggcggg
      361 ctgccaaaga aactgctttc agaaaaccga tccgcaataa ctaattaaca gcccgtttcc
      421 tttgcaggat gaagcaacaa acttaaccgg cagctaacgg ctccgcggaa ataatcacct
      481 gcgcataggc gtaaggatac tcatccgtca gtgacaaata cacgcgcgcc tcataccccg
      541 ccggcgtcat ggcgcgcagc cgctccaacg ccgccccatg caacgacaag gtcggctgcc
      601 cggacggcaa attcaccacc cgcaaatcgg acaaaaacac cccatcccga aaccccgtgc
      661 ccaaggcctt ggcacaagcc tccttggccg caaaacgctt ggcataactc gacgccgcct
      721 gccccgcccg cttctcagcc cgcgcccgct caacctccga aaacacccgc tgcgtgaacc
      781 gctccccatg ccgctccaac gcccgctcaa tgcggcgaat atcgcaaatg tcggaaccga
      841 gcccgaggat catgccttgg cccgttccac ctgcgcgatg ctcgccgccc cgcgcaggcc
      901 ggcgatgacc tggttgaggt ggcgcgtgtc gcgaacctcg acatcgacga tggtttcgaa
      961 gaaatcctgc tggcgatggg tgattttgag attggcgata gccccgccct gctgcgagac
     1021 ggcgttggtg agattggcca gggcgttcgg gctgttgctg gcgatgacgc tgatgcggcc
     1081 gacgaatttg ctgttcttgg gctccatgcg ggcgatggcg gcattgtccc aatcgacatc
     1141 gataaaacgt tcaggcgtgg cggcgaaacc atcgagcgtc gtgcagtcct tggcatggat
     1201 ggtcacgccc ttgccggtgg tgacgatgcc gacgatcttg tcgcccggca gcggatggca
     1261 acagccggca tagtgcacat ccatgccggc gacgagcccg gtgaccggca tgttgctttc
     1321 ggcgcggagg atattattgc gcggtgaacg tgcggagagg ccagtgccga tgaaggccgg
     1381 cagcatacgc ggcgcaccgc cgccgcgcag ctcagggtac gcagcgtgga cgacatcctt
     1441 cggcccgaca atgcccgtgg cgacggcgac atagagatca tccacactgg cctgcttgaa
     1501 ttgcttggca atgggctcaa gcactttttc ggagccgtcc acgccatcct ggcggaaggc
     1561 tttggcaagc agcgacttgc cagcatcgcg gtgctggtcg cgcatttgct gcgcgaggaa
     1621 gcggcggatg cgggcgcgcg ccttgccggt aacaacaaac cgctcccatt gcgggctcgg
     1681 cgtgccgcca cgggcagtaa gaatttccac ctggtcgcca ttctgcaact catagcgcag
     1741 cggcatgagg cggccattga tgcgcgcgcc gacgcaggta tcaccaatct ggctatgcac
     1801 agcataggcg aaatcgactg aggtggcacc gcgcggcagc tggatgagct ggcccttcgg
     1861 cgtgaagcag aacacctggt cctggtagag ctcgagcttg gtgttttcca gaaactcgtc
     1921 gggtgccgcc gagttttcga gaatttccag aagatcctgc acccagcgga atttcttcac
     1981 gtcagaggca gaggcgtcat cctgtttgta tagccaatgc gcggccacac cgttttccgc
     2041 caccgcctgc atctccggcg tgcggatctg aatctcgatt ttctgattcc gcggctgccg
     2101 cagagtcacg cccgtgtgca gggactgata accattcgct ttcggcgtcg agatataatc
     2161 cttgaagcgc ccggcaatga ctgggtaagc agcgtggatg gcgccgagtg ccacatagca
     2221 atcgccgcgc gtcggcacga tgatgcggaa ggccatgatg tccgaaagct gctcgaacgc
     2281 cacgttgcgg cgctgcatct tctgccagat ggaataaggc gatttctcgc gcccggcgat
     2341 gtccgccgtt ttcaccccgg catcgaggca cactttcgtc agctcctgac gcacctcttc
     2401 gataacatca gcaccctgtc cgcgcaaaaa attgagacga gcctggatcg attcataagc
     2461 ctccggatcg atctccgcga aggagcgcgt cagcagctct gtcttcaccg cctccatgcc
     2521 gatgcgttcg gcgagcggcg cgtagatgtc catcgtttcg cgcgcgatgc gctggcgctt
     2581 atgcgcagcc gagatggcgc cgatggtgcg catattatgc agccggtcgg ccagcttcac
     2641 gatgagcacg cggatatcct tgctcatcgc cagcaccagc ttgcggaaat tctccgcctg
     2701 cttggtgcgg tcggactgca attccagccg cgtcaacttg gttacgccat ccaccagccc
     2761 ggccacttcg gggccaaagc gggtgcgcac ctcgttcagc gtgaaggagg tatcctccac
     2821 cgtgtcatgg aggatggcgg tgacgatgga ggccacatcc agccggtagc cggccaggat
     2881 attggccacc gcgagagggt gggtgatgta tgcttcgcca ttatcgcgct tctggccctc
     2941 atgggcctgc atcgcggcgt cataggcatc gtcgataaaa gccgggtcgg ccttggggtc
     3001 gtaagccgct acgcgggaca acagcggcgc cagctccggg tggaatttac ccgtgccacc
     3061 ccccacccct tcgggtgcat aggacaggct caactccagg cagcctgtcc gcatggcgcc
     3121 tacctgcggg acttgccgcc gagctcagcc tcgatcgccg cctggatatc ctccggcgac
     3181 atttcctcgg cctcggcggc catggcagca gcttcttcct cggcggacac gtcctgcagg
     3241 ccgaagatat tctgctcagt cgggatcagg tcgatcactt cctcgtccac cggctcgggc
     3301 tcgggcacgc gggacaggga cttcaccagg tcggcttcca gatccggcag gcccaccgtt
     3361 tcgtcggcga tctcgcgcag ggcgacgacg gggttcttat cattgtcgcg gtcgatggtc
     3421 agctgctcgc cacggctgat attgcgggcg cgctgcgcgg ccagcagaac cagctcaaag
     3481 cggttcggca ccttcaaaac gcagtcttca acagtgacgc gagccatacg ggaaacgctc
     3541 cggaaaaaga aaattgaaga attgccttac cctgcggcct gatccgatgc aagtcttctc
     3601 attttatggc agccttgtcc gccccgccaa gcacctcaaa accggcacat tttgctcctc
     3661 ggggcggcca aacggcctat agctcctcat ccgcccaagg cgtaatcccc tgcggcggca
     3721 attcggccag cagcgtggca atgctctggc gcagcaccgg atggcgccag ccgggcgcca
     3781 cgtccagcag cgggcgcagc acgaaggcgc gcaaatgcgc cctaggatgt ggcaatattg
     3841 ggtcgggcac cgcgcgaatg atgccgttga ggtcgataat gtcgagatca agcgtgcgcg
     3901 ccgcgttaac ctcgccacgg gcgcggccaa atcgaccctc gatctcctgc aaccgggcca
     3961 gcagcgcatc cggcgcgata tccccctcca acctgatcat gccgttgcag taatcgggct
     4021 gactggcggc aggaatgggg cgggtgcggt accagggcga aagggcgacg aattcgagcc
     4081 cctctatggc gcgcacggcc tcagcggctt ccgcgcagct ttcccttgcg ctgacgccgt
     4141 ccggacccgg cagattggcg ccaatggcaa caaggatcat ttgctgctat gcctgcgcac
     4201 gattcccaga accatcacat tgctggacac aacgccgcca gattctaaca ttgaaccctc
     4261 tcttgtgtag gctttttaac tttttctcgg ccggaagaaa ccccccatga tccgattttc
     4321 gacccaggaa cgcacggcgc tcttcattga cggcgccaat ctttatgcgg caacacgcag
     4381 tctttccttc gatattgact accgcaggtt gctggaattt ttcggcacaa aaacaaattt
     4441 actgcgcgcc tattactact ccgcactgct cgagaccgag gattattcgc cgctgaagcc
     4501 tctaacagac tggctcgcct ataacggcta ttcgctggtc acgaagccgg ccaaggagtt
     4561 caccgacgcg atgggcaggc gccggatcaa gggcaatatg gatatcgagc tggccatcga
     4621 catgctcgaa ctcaccccgc atatggatca tgccattctg ttctcgggcg attccgattt
     4681 ccgccggctg gtcgaggcgg tgcaacgcaa gggtgtgcgt gtttccgttg tctcgacgat
     4741 caagacaagc ccgcccatga tcgcagatga gctgcgccgc caggcggatc aatatataga
     4801 acttgccgac atcgccccgg aattcacccg caagccaagc gactcgcgcc cccgcacgcc
     4861 gaaccgggac gatgatttcg catgatgccg
//
LOCUS       DASQCV010000653         2391 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2625768, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000653 DASQCV010000000
VERSION     DASQCV010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2391
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2625768"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..471)
                     /locus_tag="VEQ16_10230"
     CDS             complement(<1..471)
                     /locus_tag="VEQ16_10230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HYP64258.1"
                     /translation="MKLPETMRCVTVPQPGGPEAMRIETAPLPVPRDDEILIRVQAAG
                     VNRPDVQQRMGLYPPPPDASPLLGLEVAGEVVALGAMASGFFPGHKVTALCNGGGYAE
                     YVAVPAGQCLPWPEGYDSIRAGALPENFFTVWANVFDMAGLKPAESLLVHGGTSG"
     gene            546..1715
                     /locus_tag="VEQ16_10235"
     CDS             546..1715
                     /locus_tag="VEQ16_10235"
                     /inference="COORDINATES: protein motif:HMM:NF024850.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP64259.1"
                     /translation="MILSRRLALGLAGAAALAPAARAAKPAHEAGANESGASAAPAAF
                     TCGAALPLSGAAALQGDEALRGIQLAIDAVNAAGGIAGLPLTLVTADMPSPAEAGAVV
                     NGLITSSHAGMMFGSGDSALSLPATAAAELAQMPFIELTAPADGICTRGFKYLLRTGP
                     STQMAAQLAVQTLQARFAGRKLGLLYNSSVTGSAFAGALNAALGAAKLQLTLSVGYPE
                     GGADLHDEAGRLMRAGVEVLLHVAGPDGALAWGLATHGLNWQPKALIGYGAGYGYRQV
                     AAALPDAFTGAYVIAAPFYPDQAETVQAAYLARYGTAPRAADSLTAYAGAKLVFDTLG
                     GVDGDAGKLLGALRQAHLPAGAMANGFAVQFDHNGQNTGAYVTLQQWRGGVLAPV"
     gene            1882..>2391
                     /locus_tag="VEQ16_10240"
     CDS             1882..>2391
                     /locus_tag="VEQ16_10240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II transmembrane
                     domain-containing protein"
                     /protein_id="HYP64260.1"
                     /translation="MTSILMLMGHAALAQTAAPDPTAAANAYANAPHNWQLWFPVAGS
                     PMQAKIDWLMQYVLWIMTAVVAFVGVLMVYVILRFRASVNKVPSQRTHNTLVEVVWIV
                     VPVLVLAVIIVPSINLIYYQADDSNPYMTVTVTGHQWYWEYNYNSVPGLDYTSYMIPD
                     DKIQPGQIRR"
BASE COUNT          386 a          758 c          816 g          431 t
ORIGIN      
        1 gcccgaggta ccgccatgca cgagcaggct ttccgccggc ttcagcccgg ccatgtcgaa
       61 aacattggcc cagacggtga aaaaattctc cggcagcgcg ccggcgcgga tggaatcata
      121 accctccggc cagggcaggc actgacccgc cggcacggcc acatactcgg catagccgcc
      181 gccattgcag agggccgtca ccttgtggcc gggaaagaag ccgctggcca tggcacccag
      241 cgccaccacc tcgcccgcca cttccagccc caggagcggg ctggcatcgg gcgggggcgg
      301 gtacagcccc atgcgttgct gcacatccgg ccggttgacc cccgcagcct gcacgcggat
      361 gaggatttcg tcgtcccgtg gcaccggcag gggggcggtt tcgatccgca tcgcctccgg
      421 gccgcctggt tggggcacgg tgacgcagcg catggtctcg gggagtttca tggcgcgcag
      481 actcctctcc tggcggggta gcgtcaagcc ttgccgagtc agaccaacgg tgcgaggaga
      541 ccggcatgat tttatcccgc cgcctggcgc tggggctggc cggggctgcc gctctggcgc
      601 ccgccgctcg cgctgccaaa cctgcccatg aagctggcgc caatgagtcc ggcgcgagtg
      661 ccgctccggc tgcgttcacc tgcggcgcgg cgctgccgct ttcaggcgcc gcggccttgc
      721 agggcgacga ggcgctgcgt ggcatccagc tggcgatcga cgcggtgaat gcggccggtg
      781 gcattgccgg gctgccgctc accctggtca ctgccgacat gccctcgccg gcggaggcgg
      841 gtgctgtggt gaatgggttg atcacctcca gccatgccgg gatgatgttc ggcagcgggg
      901 attcggcctt gtcccttccg gccacggcgg cggccgagct ggcgcagatg cccttcatcg
      961 agctgaccgc cccggccgat ggcatctgca cgcgcggctt caaatatttg ctccgtaccg
     1021 ggccgtccac gcagatggcg gcgcaattgg cggtacagac actgcaggcg cggttcgctg
     1081 ggcgcaaatt ggggctcctt tataatagca gtgtcaccgg cagcgccttc gccggggcgc
     1141 tgaacgcggc gttgggcgct gcgaaactgc agctgacctt gtccgtgggc tatccggaag
     1201 gcggcgcgga tttgcatgac gaggcagggc ggctgatgcg cgcgggggtg gaagtgctgc
     1261 tgcatgtcgc cgggccggat ggcgcgctgg cctgggggct ggcgacgcat gggttaaact
     1321 ggcagcccaa ggcgctcatc ggctatggcg cgggctatgg ctatcgccag gtggcggcgg
     1381 cgctgcctga tgcttttacc ggggcctatg tcatcgccgc ccccttctat cccgaccagg
     1441 cggaaacggt gcaagccgcc tatttggccc gctacggcac ggccccgcgc gcggcggaca
     1501 gtctcaccgc ctatgccggc gcgaagctgg tattcgatac gctgggcggc gtggatggcg
     1561 atgccgggaa gctgctcggc gcgctgcgcc aggcccatct gccggcaggc gccatggcca
     1621 acggattcgc cgtgcaattt gaccataatg gccagaatac aggggcttat gtgacattac
     1681 agcaatggcg cggcggggtt ctggcgccgg tttagacaac aggcggggca aacggcaggg
     1741 atttgagcgt aaccggcgca caccgcttga tcttggcttt ccccgcttct atcactggct
     1801 ttatgaacaa gggccgatga cacggcccgg cagaagcggg aaacaagagg catgatgcgg
     1861 cgtttaggat cggtgttggg tgtgacctct attctgatgc tgatggggca cgccgctttg
     1921 gcgcaaacgg cggcgcccga ccccacggcg gcggcgaacg cctatgccaa cgcgccgcat
     1981 aactggcagc tctggtttcc ggtggcgggc tcgccgatgc aggccaagat cgactggctg
     2041 atgcaatatg tgctctggat catgaccgcg gtggtcgcct tcgtcggcgt gctcatggtc
     2101 tatgtcatcc tccgcttccg cgcctcggtg aacaaggtgc cgagccagcg gacgcataat
     2161 acgctggtcg aggtggtctg gatcgtcgtg ccggtgctgg tcctggccgt gatcatcgtg
     2221 ccatcgatca acctgatcta ttatcaggct gatgattcca acccctatat gacggtcacg
     2281 gtaacgggcc atcaatggta ctgggaatat aattataatt ccgtgccggg gctcgattat
     2341 acgagctaca tgatccccga cgacaagatc cagccgggcc agatccgccg c
//
LOCUS       DASQCV010000654         1884 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_635944, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000654 DASQCV010000000
VERSION     DASQCV010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1884)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1884)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1884
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_635944"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(181..1425)
                     /locus_tag="VEQ16_10245"
     CDS             complement(181..1425)
                     /locus_tag="VEQ16_10245"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HYP64261.1"
                     /translation="MNRQQWYAGIDWATESHHVFLTDGSGRKIGEKIFKHSGAGLAEM
                     AAWLMAASQAKEPGHIQIAIEVTHGPVVETLIERGFTVHAINPKQMDRFRDRFTLAGA
                     KDDSRDAEVMASALRTDPRCFRLLAAPDPVIAELREWSRIAEDLSAERNRLTNRFRQQ
                     LWRYFPAMLELESDLGAEWFLDLWEAAPTPCKAARIRETAAAKILKRHRIRRFAAGHV
                     VAVLRTAPVQVAAGTVKAACAHTETLIARIRLVNAQIKEAQRHLDALTARLIPTEDSE
                     AGQQKQHDVEILASLPGVGRIVLATLLAEAWDALLRRDYAALRSLTGVAPVTKRSGKS
                     CIVIRRQACHDRLANAMYHWARIAVQYDAKSKAKYTALRGRGHSHGRALRSVADRLLN
                     VACAMLKAGTLFDPSLKTQNAS"
BASE COUNT          354 a          600 c          575 g          355 t
ORIGIN      
        1 cccgccttgc acatcggcca ggaaaaagtt tacggcgtcc agccggtgat tgaggctccc
       61 atagcatagg tacccgcgca aatgccgcca ctcagctgac tttcgaatat cctaaaaaag
      121 caggccgccg gcttgagttg cagccagcct ctggcccagg gcgggactcc ccaccattta
      181 tcaagaggca ttttgggttt tcagtgaggg atcgaacagg gtgccggcct tgagcatggc
      241 gcaggccacg ttgaggaggc gatcggcaac cgatcgcaag gcacggccat ggctatgacc
      301 acggccgcgc aaggcggtgt acttagcctt gctcttcgca tcgtactgca cagcgatccg
      361 cgcccaatgg tacatggcgt tggcgagccg gtcatggcag gcttgcctcc ggatgacgat
      421 gcagctcttg ccggagcgct tggtcacggg cgcgactcct gtcaggctgc gcaaggcggc
      481 gtaatcgcgc cgcagcaagg catcccaagc ctctgcaagc agcgtggcga ggacgatcct
      541 tcccactccc ggcaaggatg cgaggatttc cacgtcatgc tgcttttgct gcccggcctc
      601 agaatcctct gtggggatga gcctggctgt cagcgcatcg aggtggcgtt gggcttcctt
      661 gatctgggcg tttaccaggc ggatgcgtgc aatgagcgtc tcggtatggg cgcaggccgc
      721 tttaacggtt ccggcggcaa cttgcaccgg cgccgtacgc agcacagcta ccacatggcc
      781 ggcggcgaag cgccggatac gatggcgctt cagtatcttg gcggctgccg tctcgcggat
      841 acgggccgct ttgcaaggcg ttggcgcagc ttcccacaga tcgaggaacc actcggcgcc
      901 aaggtcgctt tccaattcca gcatggcggg aaaatagcgc caaagctgct gccgaaaccg
      961 gttggtgagg cggttgcgct cggcgctaag gtcctcggca atccgcgacc actcccgcag
     1021 ttcggcgatg accggatcgg gcgccgccag cagccggaag cagcgcggat cggtacgcag
     1081 ggccgaggcc atgacctcgg cgtcgcggct gtcatccttt gcgcccgcca aggtgaagcg
     1141 gtcgcggaag cgatccatct gtttcggatt gatggcgtgc accgtaaagc cgcgctcgat
     1201 cagcgtctcg accaccgggc catgcgtcac ttcgatggca atctggatat gtcctggctc
     1261 tttggcctgg ctcgctgcca tgagccaggc cgccatctcc gccaagcccg caccgctatg
     1321 cttgaagatt ttctcgccga ttttgcggcc actaccgtct gtcagaaaca catgatggct
     1381 ctcagtcgcc caatcgatgc cggcgtacca ctgttgtctg ttcatccgtt ttccccgcct
     1441 gaaattgcga gccgccgcca ccattgccgg tccctgtact ggcgctcgga aagcaagtca
     1501 caggtccggc gcggactccc cacggggcat cgattgcggc caatccagcg gggcgcacat
     1561 cccgcccagg tgatcaagtc acaaggacca attggctgct cctgctggac cggctcggtt
     1621 cgtgaaggtt acgctgattt gcgccgccgc cggccgctct acgttccgct acgcttcact
     1681 tcgcgcgccc ggcgccgagc ctttacgaac cgcccgggaa aggtacaggg acccaagcca
     1741 tggccgccag ggaaatcggg gcaaagaaat acatcgtcaa actgagcgaa gcagaacgcc
     1801 atcatttgca ggccttgatc aacaagggaa aaagctccgc caagcggctt ttgaaagccc
     1861 ggatcctgct caaggccgat gccg
//
LOCUS       DASQCV010000655         3068 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_302146, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000655 DASQCV010000000
VERSION     DASQCV010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3068
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_302146"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..592
                     /locus_tag="VEQ16_10250"
     CDS             <1..592
                     /locus_tag="VEQ16_10250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007421895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HYP64262.1"
                     /translation="GTSFAVPALLLHAFPGWFVGIAFAAIAIGALVPAAIMAIASANI
                     FTRDIWTQFVHSPGHHTETVAAKLFALVMVVGAVLFILYMPATYAVQFQLLGGMWIIQ
                     TFPSVAFSVFTRFFNGWALFIGWAVGILSATWLAYLNHFTVSVWPFHVLGYTLPSYIA
                     FATVLLNALVAVVLSPVINAIASDRGTDETAVADYG"
     gene            complement(631..840)
                     /locus_tag="VEQ16_10255"
     CDS             complement(631..840)
                     /locus_tag="VEQ16_10255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64263.1"
                     /translation="MTPDGQFVEPPKPSILTWLLRLAMFGLTLGLIVALFWTLVLVVP
                     LLILAGIVGFFLFRPRVTWINTRRF"
     gene            complement(902..1783)
                     /locus_tag="VEQ16_10260"
     CDS             complement(902..1783)
                     /locus_tag="VEQ16_10260"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HYP64264.1"
                     /translation="MNDVMVDRGVIEVESLPFWTGPIKIWPLEGGITNRNYGVQNAEG
                     QRFAVRLGADRPEHGVMRFNEQAAARAAARAGISPKIFYTAPGVMVSRLLPGRSLKPD
                     EVQRPENLLRIAALLRRCHTTMGPFLQGPLLAFWVFHIIRSYAHGLREGRIADHLPRL
                     LEANDLLESRIGKAEIVFCHNDLLAANLFDDGARLWLLDWDYAGFNCALFDLANLSSN
                     NNFYPQEDEDLLQAYFGRKFERDEYDIFQAFKCASLLREVLWSATSEQSPSIAFDYAR
                     YTDDYMVRFDNAFSALN"
     gene            1939..>3068
                     /locus_tag="VEQ16_10265"
     CDS             1939..>3068
                     /locus_tag="VEQ16_10265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019013200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HYP64265.1"
                     /translation="MPADDLFGPPPEAEQSPAGPRPLAERLRPQSLAEIVGQPHLLGP
                     EGSLTGMLQRRSLASLILWGPPGVGKTTIARLLAAQAGLQFRQISAVFSGVADLKKVF
                     DEAQRLRRAGRTTLLFVDEIHRFNRAQQDAFLPVVEAGTIVLVGATTENPSFALNGAL
                     LSRCQVFVLRRLDDAAMEQLLTRAEVDMERDLPLTAGARATLRAMADGDGRALLNMAE
                     QLFALPPDSVLDEAALGELLSRRAALYDRDREEHYNLISALHKSMRGSDADAALYWLA
                     RMLAGGEDPRYIARRITRFASEDIGLADPQALPQALAAWDAYERLGSPEGEICIAQAV
                     LYLATAPKSNAAYKALGAANRAARETGSLMPPMHILNAPTKL"
BASE COUNT          540 a          964 c          985 g          579 t
ORIGIN      
        1 cggcacgagc tttgccgtgc cggcgctgct gctgcacgcc ttccccggat ggttcgtggg
       61 catcgccttc gccgccattg ccatcggcgc gctggtgccg gcggccatca tggccatcgc
      121 ctcggccaat atttttaccc gcgatatctg gacgcaattc gtgcatagcc cgggccatca
      181 taccgagacg gtggcggcga aactcttcgc gctggtgatg gtggtcggcg cggtgctgtt
      241 catcctctat atgcccgcga cctatgccgt gcagttccag ctgctcggcg gcatgtggat
      301 cattcagacg tttccctctg tggctttctc ggtgttcacc cgcttcttca atggctgggc
      361 gttgttcatc ggctgggccg tgggcatttt atccgccacc tggctggcct acctcaacca
      421 tttcaccgtg tcggtctggc cgttccatgt gctgggttat acgctgccga gctatatcgc
      481 gttcgcgacc gtgcttctga atgcgctggt ggcggtggtg ctgagcccgg tgatcaatgc
      541 gatcgccagc gaccgtggga cggatgagac ggctgtggcg gattacggct gagcagtact
      601 taacaaaaaa cggcgccctt cttgcttctc ttaaaaacgg cgcgtgttga tccaagtgac
      661 gcgcgggcgg aacaggaaga aacctacaat gccggccagg atcaacagtg gcaccaccag
      721 caccagggtc caaaacaaag caactatgag gcccagcgtc aggccgaaca tcgctagccg
      781 cagcaaccat gttaaaatgc tgggcttcgg cggttcgaca aactgcccgt ccggcgtcat
      841 gtcaatgacc ggaccctgtg actcttccat gaaacctata taggcgcggg gcgccccggc
      901 ttcaattcag cgcggaaaac gcattgtcga agcgaaccat gtaatcgtcc gtatagcgcg
      961 cataatcgaa ggcgatgctt ggcgactgct cggacgttgc gctccacagc acttcgcgca
     1021 acagcgaggc gcatttgaag gcctggaaaa tatcatactc gtcgcgctcg aatttgcggc
     1081 cgaaataggc ctggagcagg tcctcatctt cctgcggata gaaattatta ttggaggaaa
     1141 gattggcgag atcgaacaga gcgcagttga aaccggcata atcccagtcg agcagccaga
     1201 ggcgggcgcc gtcatcgaac aaattcgcgg ccagcagatc gttatggcag aacacgatct
     1261 cggccttgcc gatgcggctt tccagcaggt cgttggcttc cagcaggcgc ggcagatggt
     1321 cggcgatgcg gccctcgcgc agcccgtgcg cgtaggagcg gatgatgtgg aacacccaga
     1381 aggccagcag cggcccctgc aggaagggtc ccatggtggt atggcagcgg cgcagcaagg
     1441 cggcgatgcg cagcaggttt tccgggcgct gcacctcgtc cggcttcagg ctgcggcctg
     1501 gcagcaggcg gctcaccatc acgccggggg cggtgtagaa gattttgggc gaaatgccgg
     1561 cgcgcgccgc cgcgcgagcg gcggcctgct cgttgaagcg catcacgcca tgctcgggac
     1621 ggtccgcgcc caggcgcacg gcgaagcgct ggccttctgc attctgcacg ccataattgc
     1681 ggttggtgat gccgccttcg agaggccaga tcttgatcgg ccccgtccag aacggcagcg
     1741 actcaacttc tatgacgccg cgatcgacca tcacatcatt cacgtcagtc caccccgatg
     1801 aagccctgta tgcacaatat atcaatagaa gaccctgggg aaactggaaa tagcaccccg
     1861 gtccctctgc ttttggcgca atcttggtcc ggtttccgcc ccgtggcaag cgcggggcga
     1921 tgcggctagt atgcggcgat gcccgctgac gatctcttcg gcccgccgcc agaggcggaa
     1981 caatctcccg ctggcccgcg gcctttggcc gaaaggctgc ggccgcaatc cctggccgag
     2041 attgtcggcc agccgcatct gctagggccg gaaggcagcc tcacgggaat gttacaacgc
     2101 cgctccttgg cctcgctcat attgtggggc ccgccggggg tgggcaagac caccatcgcg
     2161 cggctgctgg cggcgcaggc ggggctgcaa ttccggcaga tttccgccgt tttctccggc
     2221 gtggcggatt tgaagaaagt gttcgacgag gcgcagaggc tgcgccgggc cgggcggacg
     2281 actttgctgt tcgtggacga aatccaccgc ttcaaccgcg cccagcagga tgcgtttctg
     2341 cccgtggtgg aggccggcac catcgtgctg gtgggggcga cgacggaaaa cccctccttc
     2401 gccctgaatg gcgcgttgct gtcgcgctgc caggtttttg tcctgcgccg gctggacgac
     2461 gcggcgatgg agcaactgct cacccgcgcc gaggtggata tggagcggga tctgccgctg
     2521 acggcgggtg cgcgggccac gctgcgggcc atggccgatg gcgacgggcg ggcgctgctt
     2581 aacatggccg agcagctttt cgccctgccg ccggacagcg tactggacga ggcggcgctg
     2641 ggcgagctgc tctcccgccg cgcagctttg tatgaccgcg accgcgagga gcattacaac
     2701 ctcatctctg ccttgcataa atccatgcgc ggctcggatg ccgatgctgc gctctattgg
     2761 ctggcgcgta tgctcgctgg cggcgaggac ccgcgctaca tagcccgccg catcacccgc
     2821 ttcgcctcgg aggatatcgg gctggccgac ccgcaggctt tgccccaggc tttggccgcc
     2881 tgggacgcct atgagcggct cggctcgccg gagggggaga tttgcatcgc ccaggccgtg
     2941 ctctatctgg ccacggcgcc caagagcaac gccgcctaca aggcgctggg cgcggccaac
     3001 cgcgcggcgc gcgagacggg cagcctgatg ccgcccatgc atatcctcaa cgcgccgacc
     3061 aagctgat
//
LOCUS       DASQCV010000656         1885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2461216, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000656 DASQCV010000000
VERSION     DASQCV010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2461216"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(258..1589)
                     /locus_tag="VEQ16_10270"
     CDS             complement(258..1589)
                     /locus_tag="VEQ16_10270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_057144789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HYP64266.1"
                     /translation="MRQKRLLQASLFDGFANHETGRELKAMSEWLDGHRELLDLVAGD
                     LCRRRVKDVGRHGLPAESTLRCGLLKQHRQLSYEELAFHLEDSASFRTFARLPMAWTP
                     KKSVLQKTIGAIRAETWEAINQTLLGGARRQRVEDGAVARFDSTVAAALIHEPSDSSL
                     LWDAVRVMVRLLKEADSLLGGAAIAWRDRRRAAKKRARAIQFIRGQPKRVQLYRELIA
                     ITRATVAGLRQAEARLAKQEAPQTVLWRAKASHYRPLIERIIAQSERRVLKGEQVPAG
                     EKLVSLFEPHADIIVKGGRDTSYGHKLNLVTGRSGLVLDIVIEAGNPADSERLLPMLE
                     RHIAFYGQPPRQAAADGGYASQANLDKAKACGVSDMAFHKKCGLRIEDMVKSRWVYRK
                     LRNFRAGIEAGISCLKRAYGLARCTWRGLEHFKAYVWSSVVAYNLALFARL"
BASE COUNT          356 a          597 c          552 g          380 t
ORIGIN      
        1 tggcctgtcc ctgccgaaaa gactctgcgg aaattcgaac tttaggcggc tagctagttt
       61 gcgtccataa acgcctgttt ctcttatggt ttaggcgttc accattgcgc gattggcgcc
      121 cttttgatgg agcgggaggc gacggagcga gtccaaaacc gttcggaatg accggcggcg
      181 agcgcctcag acaaaatgtg ggtttccagc ttactgccgg tttgcctgga actggcggcg
      241 tcgaagcttc aagcggccta aaggcgggcg aacagggcga ggttataggc cacaaccgag
      301 gaccagacgt aggccttgaa gtgctcaagc ccgcgccaag tgcagcgggc aagcccgtag
      361 gcgcgtttca gacaagaaat gcccgcctcg atgccggcgc ggaaattacg gagcttgcgg
      421 tagacccaac ggcttttcac catgtcttcg atgcgaaggc cgcacttctt atggaaggcc
      481 atgtcgctga cgccgcaggc cttcgccttg tcgagattgg cctggctcgc atagcctcca
      541 tcggcggccg cctgccgcgg cggctgtccg taaaaggcga tatgacgctc cagcatgggc
      601 agcagccgct cgctatcggc cggattgccc gcttcgatca caatgtcgag gaccaagccg
      661 ctcctgcctg tgacgaggtt gagcttatgg ccgtaactgg tatcgcgacc gcctttgacg
      721 atgatatcgg cgtgcggctc gaacaggctg acgagtttct cgccggctgg aacttgttcg
      781 cccttcagca cccgccgctc gctctgtgca atgatccgtt cgatgagcgg ccggtaatgg
      841 ctggccttgg cccgccaaag cacagtttgt ggggcctcct gctttgccag ccgcgcctcc
      901 gcctggcgaa ggccggctac cgtcgcgcgc gtgattgcga tcagctcgcg atagagctga
      961 acccgtttgg gctggccgcg aataaactgg atggcgcgcg cccgtttctt ggccgcacga
     1021 cggcgatcgc gccaggcaat agcggcgccg ccaagcaagc tatccgcttc cttcagcagc
     1081 cggaccatca cccgcacggc gtcccaaagc aggctgctgt cgcttggctc gtgaatgagc
     1141 gccgcggcaa ccgtgctgtc gaaccgcgcg acggcgccgt cttccaccct ttgccgcctt
     1201 gcgccgccga gcagcgtctg gttgatcgcc tcccacgttt cggcccggat ggcgccgatg
     1261 gttttttgga gcacagactt tttcggggtc cacgccatgg gcaggcgcgc aaaggtccga
     1321 aacgacgccg aatcctccag atggaacgcc agttcctcgt aactcaactg gcgatgctgc
     1381 ttgagaagcc cgcaacgcag cgtcgattcc gccggcaaac catgccggcc gacgtctttc
     1441 acccggcgcc ggcacagatc tcccgccacc aaatcgagca gctcgcgatg gccatcaagc
     1501 cactcagaca tcgctttcag ctcccggccg gtctcgtgat tggcgaaacc atcgaatagg
     1561 ctcgcttgca gaaggcgttt ttggcgcatt tgtgagttcc cccggcaaac gcttttcttg
     1621 agaatcaagg gtttaccgtc agaggctgca caaatccggc cggacgcgcc ttaagaaaag
     1681 gctgaaatac actagtttat tcaatagctt atgccttcat ggacgcaaac tagctaatct
     1741 cacacatcag ctggaagcgg tgcgtcgccc tttttatgcg tcgccctttt tatattgaga
     1801 cccaagcgct ccagcaccct gtatcaccgg ggaccacccc tgggcctggc ctccaccgtg
     1861 gccgtcatgc ccgcaacgag cggga
//
LOCUS       DASQCV010000657         2985 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1798623, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000657 DASQCV010000000
VERSION     DASQCV010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2985
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1798623"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..818)
                     /locus_tag="VEQ16_10275"
     CDS             complement(<1..818)
                     /locus_tag="VEQ16_10275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HYP64267.1"
                     /translation="MAISSKHPETLALHAGWRSDSNTHAVAVPVYQTTSYQFDSPEHA
                     ANLFALKEFGNIYTRIMNPTTDVLEQRLAALEGGVGALALASGQAASAFSVQNLARAG
                     DNVVASTDLYGGTWNLFANTLKDQGLEVRFVDPADPHAFANATDARTRAYYAETLPNP
                     KLRLFPIAEVAEIGRKQGIPLIMDNTAAPLLVRPFEHGAAVVMYSTTKYIGGHGTSIG
                     GAIIDGGNFDWAAFPERQPLLNTPDPSYHGAVWTEAVKPLGPIAYIIRARVVLLR"
     gene            complement(878..1669)
                     /gene="hpnK"
                     /locus_tag="VEQ16_10280"
     CDS             complement(878..1669)
                     /gene="hpnK"
                     /locus_tag="VEQ16_10280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010515488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hopanoid biosynthesis-associated protein HpnK"
                     /protein_id="HYP64268.1"
                     /translation="MREVIFSADDFGLSPAVNEAVEIAHLQGRLSQASLMVAAPAADD
                     AVARAKTMPGLDVGLHLVLVDGDSLLGHEKLPAITGPDGRFSTDQAALGVKYFFSPAA
                     RRELRAEIEAQFATFAATGLTLHHADAHKHFLLHPTIASMMIEVGKRYGLKRLRVPAE
                     PPAVMKALGETVSFADRALYAWTRLLRLQARGLELPDQVFGLKWSGHMTRERIERLLP
                     LLPEGRTEIYTHPATRRDEMLVRLMPDYEHVAEFEALLQPGFNSP"
     gene            complement(1727..2191)
                     /locus_tag="VEQ16_10285"
     CDS             complement(1727..2191)
                     /locus_tag="VEQ16_10285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1178 family protein"
                     /protein_id="HYP64269.1"
                     /translation="MIHYQLRCAAGHEFDGWFKNSDGFETQAAAGFVSCPSCGSTDVL
                     RALMTPGIPRKGRALVPAEAQEPAPEPASLPAAGGVMPDAVRAALRKLREEVEKNCDY
                     VGTDFAEEARRIHHGETAPRGIYGESTDEEAEELAEEGISFARIPWAPRNDS"
     gene            complement(2188..2445)
                     /gene="grxC"
                     /locus_tag="VEQ16_10290"
     CDS             complement(2188..2445)
                     /gene="grxC"
                     /locus_tag="VEQ16_10290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019461162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HYP64270.1"
                     /translation="MAEIEIFTQPYCPYCARAVALLTDKGAAFKEINAPHGTPERKEA
                     IARSGGRTTVPQIFIDGAAIGGCDDLMALEAAGRLDLLLAA"
     gene            complement(2473..>2985)
                     /locus_tag="VEQ16_10295"
     CDS             complement(2473..>2985)
                     /locus_tag="VEQ16_10295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HYP64271.1"
                     /translation="RAALRYDETAKRMLLMLKYDDRTEAVNGLAELMRRPGEPLLQAA
                     NILVPVPLHPSRLRARRYNQAALLAIQLARLTGRPLGLDMLARRRATAPLEGLDRAAR
                     QAELDGAIEVRPDAQLQDKRVLLIDDVMTSGATANECARVLLAAGARRVDVLTAARVA
                     DPRFEGLALA"
BASE COUNT          563 a         1045 c          868 g          509 t
ORIGIN      
        1 cgcagcagca ccacgcgcgc gcggataata tacgcaatcg gcccgagtgg cttcaccgcc
       61 tccgtccata ccgcgccatg ataggacgga tctggcgtat tcagcagcgg ctggcgctca
      121 ggaaacgccg cccagtcgaa attgccgcca tcgatgatcg ccccgccaat ggaggtgcca
      181 tggccgccaa tatatttcgt ggtcgaatac atcaccaccg cggcgccatg ctcgaagggc
      241 cgcaccagca gcggcgccgc ggtattgtcc atgatgagcg gtatgccctg cttgcgcccg
      301 atctccgcca cctcggcaat agggaacagc ctcagcttcg ggtttggcag cgtctccgca
      361 taataagcgc gcgtccgcgc atcggtggcg ttggcaaagg catgcggatc cgccggatcg
      421 acaaaccgca cctccagccc ttggtccttc agcgtattcg cgaacagatt ccacgtcccg
      481 ccataaagat cggtcgaggc gaccacgtta tcccccgccc gcgccagatt ctgcacagag
      541 aaggccgaag ccgcctgacc agaagccaaa gcgagcgccc ccacgccccc ttccagcgcc
      601 gccagtctct gctccagcac atcggtggtg gggttcatga tgcgggtata gatgttcccg
      661 aattccttca gcgcgaacaa attggccgca tgttcaggac tgtcgaactg ataggaggtg
      721 gtctgataga ccggtaccgc caccgcgtgc gtgttggaat ccgagcgcca gccagcgtgc
      781 aaggcgaggg tttcggggtg cttcgatgag atggccatgg tcgcgtccct ggttgttgtg
      841 gacgcagcat ggcacgggtt tttattccct acaagtccta tggagaatta aaacctggtt
      901 gcaacaaagc ctcgaattcc gcgacatgct cataatccgg catcagccgc accagcatct
      961 cgtcccgcct cgttgcggga tgggtataaa tctccgtccg cccttccggc agcaagggca
     1021 gcagccgctc gatccgctcg cgggtcatat gccctgacca ttttagcccg aaaacctggt
     1081 ccggcagctc cagcccgcgc gcctgcaggc gcagcagccg cgtccaggcg taaagcgccc
     1141 ggtctgcaaa actcacggtc tcgcctaaag ctttcatcac cgcaggaggc tccgcgggca
     1201 cgcgcagccg cttcagcccg tagcgtttgc ccacctcgat catcatcgag gcaatcgtcg
     1261 gatgcagcag aaaatgctta tgcgcgtccg catggtgcag cgtcagcccc gtagcggcga
     1321 aagtggcgaa ttgcgcctcg atctccgccc gcaattcccg ccgcgctgcc ggcgagaaaa
     1381 aatatttaac acccagcgcg gcctgatcag tggagaaacg cccatcgggc ccggtaatcg
     1441 ccggcagctt ctcatgcccc agcagcgaat ccccatccac cagcaccaga tgcagcccga
     1501 catcgagccc cggcatcgtt ttcgcccgtg ccacggcgtc gtctgccgcg ggtgctgcca
     1561 ccatcaagct cgcctggctc agccgcccct gaagatgcgc aatctccacc gcctcattca
     1621 cggcggggct caggccaaaa tcatcggcgg agaaaatcac ttcacgcatc ggcgcgctca
     1681 gctgtcgtgc gaaagcacgc attcaacaat ttgcgaaagc gcgcgctcag ctatcattgc
     1741 gcggcgccca gggaatgcgc gcgaaggaaa tcccctcttc cgccagctcc tcggcctcct
     1801 catcggtgct ctcgccatag atgccgcgcg gcgctgtttc gccatgatgg atgcgcctgg
     1861 cctcctcggc gaaatcggtg ccgacatagt cgcaattctt ctccacctct tcgcggagtt
     1921 ttcgtaacgc cgcgcgcacc gcatccggca tcacgccgcc ggccgcgggc aggctcgccg
     1981 gctcgggcgc cggttcctgt gcttctgccg gcaccagcgc gcgccctttc cgcggaatgc
     2041 ccggcgtcat cagcgcacga agcacatcgg tgctgccgca ggacgggcag gagacgaatc
     2101 ccgccgccgc ctgggtctcg aacccgtcgc tattcttgaa ccagccgtca aactcatgcc
     2161 cggcggcgca gcggagctga taatggatca tgccgccagc agcaggtcga gccggcccgc
     2221 cgcctccaac gccatcagat cgtcgcaccc gccaatcgcg gcgccatcga taaaaatctg
     2281 cggcacagtg gtgcgtccgc cggagcgcgc aatcgcctcc ttgcgttcag gcgtgccatg
     2341 cggcgcgttg atttccttga acgcggcgcc cttgtccgtc agcagcgcga cggcccgggc
     2401 gcaatagggg cagtagggct gggtaaaaat ctcaatctcg gccattcctc agcaattagc
     2461 cgaggcacgc aactatgcaa gagccagtcc ctcaaatcgc ggatcagcca cgcgcgcagc
     2521 agtgagcaca tccacccgcc gcgcgcccgc cgcgagcaac acccgggcac attcattggc
     2581 ggtggcaccg gaggtcatca catcgtcgat cagcagcacg cgcttatcct gcaattgcgc
     2641 gtccggccgc acctcgatgg ccccatccaa ctcggcttgg cgggcggcgc ggtccagccc
     2701 ctccaacggg gcggtggcac ggcggcgggc cagcatatcc aaccccaaag gccggccggt
     2761 gaggcgcgcc agctggatgg caagcagcgc cgcctggtta tagcgccgcg cccgcagccg
     2821 gctgggatgc aatggcaccg gcaccaaaat attggccgcc tgcagcagtg gctcgccggg
     2881 ccggcgcatc aactcagcga gcccgttcac cgcctcggtg cggtcgtcat atttcagcat
     2941 cagcagcatg cgcttcgccg tctcgtcata gcgcaaggcg gcgcg
//
LOCUS       DASQCV010000658         2413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1300674, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000658 DASQCV010000000
VERSION     DASQCV010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2413
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1300674"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(148..963)
                     /locus_tag="VEQ16_10300"
     CDS             complement(148..963)
                     /locus_tag="VEQ16_10300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011632660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HYP64272.1"
                     /translation="MKALDGIVQDEALQRDDSWTVAGRKFSSRLVVGTGKYKDLPTTA
                     AAIEASGAEMVTVAVRRVNLSDRNTPMLQDYVSPQRYTYLPNTAGCFTADEAVRTLRL
                     AREAGGWNLVKLEVLGPAPTLYPDMAATLLAAEALIKDGFEVMVYCSDDPIAAKRLED
                     MGCVAIMPLGAPIGSGLGVQNPLMIQMIIEQSKVPVLVDAGVGTAYDATFAMELGCDA
                     VLVNSAIALANDPILMARAMKAGVEAGRLAYRAGRIPRKGFASASTPMTGLIS"
     gene            complement(960..1181)
                     /gene="thiS"
                     /locus_tag="VEQ16_10305"
     CDS             complement(960..1181)
                     /gene="thiS"
                     /locus_tag="VEQ16_10305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HYP64273.1"
                     /translation="MSNIVEQISLTVNGDSIQVEAGLTLAQLIAQLELDTRKVAVERN
                     LEIVPRSTYAAVRLESGDRLEIVHFIGGG"
     gene            1277..1738
                     /gene="aroQ"
                     /locus_tag="VEQ16_10310"
     CDS             1277..1738
                     /gene="aroQ"
                     /locus_tag="VEQ16_10310"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010514708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HYP64274.1"
                     /translation="MAAPLILVLNGPNLNMLGTREPEIYGSHTLDDLETLCAETAEGL
                     GLAIECRQTNLEGELITWVQEARERAAGVIINPAGYSHTSIALMDALLALDIPVIEVH
                     LSNIHRREEFRHHSYVSRAATGVICGLGIAGYRLALISLSDILEELEEDDQ"
     gene            1735..2193
                     /gene="accB"
                     /locus_tag="VEQ16_10315"
     CDS             1735..2193
                     /gene="accB"
                     /locus_tag="VEQ16_10315"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HYP64275.1"
                     /translation="MSLSFDPKTLAELAALLNETGLSEIELAEGDRKVRLARILAPVT
                     IPVAAPVAAAPAAAPAAAAPAAPAAADPAKHPGAIKSPMVGVAYLSAEPGAPPYVSVG
                     QSVEAGATLLLVEAMKTFNQIKAPRAGVVRQMLVTSGQPVEFDEPLLIVE"
     gene            2195..>2413
                     /locus_tag="VEQ16_10320"
     CDS             2195..>2413
                     /locus_tag="VEQ16_10320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014247331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HYP64276.1"
                     /translation="MFQKILIANRGEIALRVLRACRELGIASVAVHSTADADAMHVRL
                     ADESVCIGPALARESYLNMPAIISAALIT"
BASE COUNT          442 a          851 c          698 g          422 t
ORIGIN      
        1 ccagttcata gccgctccag gccagaggcg gcatggcgga ggcaatcatc gcgccggtgt
       61 caccccagga cgcgtcaaac ccttcataga ccaggtaggg agcgaggaaa ttggcgaaca
      121 gctcagggcc tgcgcgccaa aattttatca gcttatcaac cccgtcattg gggttgacgc
      181 gctggcgaag ccctttctcg gaatgcgccc ggcccggtag gcaagccgcc cggcctccac
      241 ccccgccttc atggcgcggg ccatcagaat cgggtcattg gccaaggcga tggcgctgtt
      301 aaccagcacc gcgtcgcagc ccagctccat ggcgaaagtg gcgtcatagg ccgtgcccac
      361 cccggcatcg accagcacgg gcaccttgct ctgctcgatg atcatctgga tcattaacgg
      421 gttctgcacg ccgagcccgg agccgatggg cgcgcccagc ggcatgatgg cgacgcagcc
      481 catatcctcc aggcgcttgg cggcaatcgg gtcatcggag caatagacca tcacttcgaa
      541 tccgtccttg atcagggctt cagccgccag caatgtcgcc gccatgtccg gatataacgt
      601 aggcgccggc ccgagcactt caagcttcac caggttccag ccacccgcct cgcgcgccag
      661 gcgcagggtg cggaccgcct cgtcagcggt gaagcagccg gcggtatttg gcaaataagt
      721 gtaacgctgg gggctcacat aatcctgcag catcggcgtg ttgcggtcgg acagattcac
      781 gcgccgcacc gccaccgtca ccatttccgc gccggaggcc tcgatggccg ccgcggtcgt
      841 gggcaaatcc ttgtatttgc ccgtgccgac gacaaggcgg gacgaaaatt tgcgccccgc
      901 cacggtccag gaatcgtccc gctgcaacgc ctcgtcctgc acaatcccgt ccaacgcctt
      961 caacccccac caatgaaatg cacgatttcc agcctgtcgc cggattccag ccgcaccgcc
     1021 gcataggtgg aacgcggcac gatttccaga ttccgctcca ccgccacctt gcgcgtatcc
     1081 agctccagct gggcgatgag ctgggccaga gtcagccccg cctcgacctg aatcgagtcg
     1141 ccattcacgg tcagactgat ctgttcaaca atattgctca tatgccgcat tatcgggccg
     1201 ggcctgccgc ctcgcaaggc cgttatcccc acaaaagttt gtcgattacg attccgctat
     1261 gctaggcgga cgcatcatgg ccgcacccct catcctcgtc ctcaacggac cgaacctcaa
     1321 catgctcggc acgcgtgaac ctgagatata tggctcacac acgctggacg atctggaaac
     1381 gctctgcgcc gagaccgccg aggggctggg cctggccata gaatgccgcc agaccaatct
     1441 ggaaggcgag ctgatcacct gggtgcagga ggcacgcgag cgcgccgccg gggtcatcat
     1501 caacccggcg ggctattccc acacctccat cgcgctgatg gacgcgctgc tggcgctcga
     1561 tatcccggtc atcgaggtgc atctctccaa catccatagg cgcgaggaat tccgccacca
     1621 ctcctatgtg tcgcgcgcgg caacgggcgt tatttgcggt ctcggcattg cgggctatag
     1681 gctggcgctg atttcactgt ccgacattct ggaagaactg gaagaagacg atcaatgagc
     1741 ctttccttcg accccaagac cctggccgag ctcgccgccc tgctgaacga gaccggcctc
     1801 tctgagatcg aactggccga aggcgaccgc aaggtgcggc tggcccgcat tcttgctcct
     1861 gtcaccatcc ccgtcgccgc ccccgtggct gccgcgcccg ccgccgcccc ggctgctgcc
     1921 gcgcccgcgg cgccggccgc cgccgacccc gcgaaacatc ccggcgccat caagagcccg
     1981 atggtcggtg tcgcctatct ctccgccgag cccggcgccc cgccttatgt gtccgtgggc
     2041 caaagcgtgg aggccggcgc caccttgctg ctggtggaag ccatgaagac cttcaaccag
     2101 atcaaggccc cgcgcgcggg cgtggtgcgg cagatgctcg tcacttccgg ccagccggtg
     2161 gaattcgacg agccgctgct gatcgtcgag taacatgttc cagaagatcc tcatcgccaa
     2221 ccgcggcgag attgcactgc gcgtcctgcg cgcctgccgt gagctgggca ttgcctccgt
     2281 ggccgtccat tccactgccg atgccgacgc catgcatgtg cgcctggccg acgaaagcgt
     2341 gtgcatcggc cccgcgctgg cgcgcgaatc ctatctcaac atgccggcca tcatctcagc
     2401 ggcactgatc acc
//
LOCUS       DASQCV010000659         2799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_637019, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000659 DASQCV010000000
VERSION     DASQCV010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_637019"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(68..868)
                     /gene="lpxA"
                     /locus_tag="VEQ16_10325"
     CDS             complement(68..868)
                     /gene="lpxA"
                     /locus_tag="VEQ16_10325"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HYP64277.1"
                     /translation="MSNFIHPTAIIEPGAEFGLGVKIGPFCTVGKNVMLEDGVELVSH
                     VAIDGRTRVGAGAQIFPFATIGLEPQDLKYKGEDTETVIGPRTKIREHASIHRGTVTG
                     TGITRIGADCLLMATVHVAHDCIVGDGVIISNNVALGGHVEVGERAIIGGNAALLQFV
                     RVGAGAMVGGLTGVTRDVIPYARVFGTRAELLGLNLIGLKRRGLEKAQLHEVNNAYKF
                     LFCGAGVFADRVAELMARNEDPYIREILDFIATPSKHGILTNVAGEEE"
     gene            complement(975..1460)
                     /gene="fabZ"
                     /locus_tag="VEQ16_10330"
     CDS             complement(975..1460)
                     /gene="fabZ"
                     /locus_tag="VEQ16_10330"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014240160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HYP64278.1"
                     /translation="MNESADLPPVDIALIETKQILTMIPHRYPFLLVDRLIDVRKDHS
                     ATGIKNVTMNEPFFQGHFPGHPVMPGVLIVEAMAQTAAGLVIATLGPEAGIPVVYFMS
                     IENAKFRKPVTPGDTLHLTLTKERRRGQVWRFDGVARVDGTAVAEASITAMIMDQVKP
                     V"
     gene            complement(1463..2512)
                     /gene="lpxD"
                     /locus_tag="VEQ16_10335"
     CDS             complement(1463..2512)
                     /gene="lpxD"
                     /locus_tag="VEQ16_10335"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HYP64279.1"
                     /translation="MQEAAKPGDPRFFTRTGPHSLAAIAALLGCEVAAGERYISGAAP
                     LQSAGPEDVSFLDNKRYAPLLAETKAGAVILHPDFAGRVPEGCIALPTQEPYVGWARV
                     LTLFFPFPEPLPGVHPSAVIDPSAELDPTVQVGANAVIGAGAKIGAGTSIGPLSFVGP
                     GVVIGADCRIHAQVTLSHAILGDHVTLYPGARIGQDGFGFAISKAGFTPVPQLGRVLI
                     GDGAEIGANSTIDRGSVQDTVIGPGVHVDNLVQLGHNVNVGANSVIVAQAGVSGSTQI
                     GPGVMIAAQAGLTGHLNIGAGARIGAQSGVMQDVPAGEEVLGAPAQNVKSFFREVITL
                     RKLAQGGRKEPKTGN"
     gene            complement(2515..>2799)
                     /locus_tag="VEQ16_10340"
     CDS             complement(2515..>2799)
                     /locus_tag="VEQ16_10340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HYP64280.1"
                     /translation="QTKFQEKNQAIQNAGQAALGQIEAELIGIIRQEAQAHGMNLILH
                     REQVVLNVAAFDLTDETAKELNQLLPSVKVPPSVVTPGMAITPPPQDQGQ"
BASE COUNT          539 a          950 c          790 g          520 t
ORIGIN      
        1 acagctactt ttttgaaaaa aagcagcaaa aaactttcgc tcctgggggc actgggccgg
       61 cccggattta ttcttcctcg cccgcgacat tggtgagaat cccatgtttg ctcggcgtcg
      121 caatgaaatc cagaatttcc ctgatatagg ggtcttcatt acgcgccata agctccgcca
      181 cgcggtcggc gaacactccc gccccgcaga agaggaattt ataggcgtta ttcacctcgt
      241 gtaattgcgc tttctcaagt ccgcggcgtt tcagcccgat cagattgagc cccaacagct
      301 cggcgcgcgt accgaatacg cgagcatagg gaatcacatc gcgcgtcacg ccggtgagcc
      361 cgcccaccat ggccccagca cccacacgca cgaattgcag caacgccgca ttgccgccga
      421 taatagcgcg ctcccccacc tccacatgcc cgccgagcgc gacattgttg gagatgataa
      481 cgccatcgcc gacgatacag tcatgcgcga catggaccgt cgccatcagc aagcaatccg
      541 cgccgatccg ggtgatgccg gtgccagtga cggtgccgcg atgaatcgag gcatgctcgc
      601 ggattttcgt ccgcggcccg atcaccgtct ccgtatcctc gcccttatat ttgaggtcct
      661 gcggctccag cccgatcgtg gcgaagggga aaatctgtgc ccccgcccct acccgcgtgc
      721 gcccatcgat agcgacatga gagacgagtt ccaccccatc ctccagcatc acatttttgc
      781 cgacagtgca gaacgggccg attttgacgc ccaggccgaa ttcggccccg ggctcgatga
      841 tcgcggtggg gtggatgaaa ttgctcaagc tggtccctgt taatctttcc gccccgctct
      901 acgcggcacg gcggtggcgg ccaagtcaat cattgtttcc gaatgtgtct tcggaagaga
      961 ctgattgtaa aagattagac gggcttcacc tggtccatga tcatggcggt gatcgaggct
     1021 tccgccaccg ccgtgccatc gactcgcgcc acgccgtcaa agcgccaaac ctggccgcgg
     1081 cggcgctcct tggtcagggt cagatgcagc gtgtcacccg gcgtcaccgg cttgcggaat
     1141 ttcgcattct cgatggacat gaaatacacc accggaatcc ccgcctccgg cccgagagtc
     1201 gcaatcacca gcccggccgc cgtctgcgcc atggcctcca cgatcagcac acccggcatc
     1261 accggatggc cggggaaatg accctggaag aaaggctcgt tcatcgtcac gttcttgatg
     1321 cccgtggcgg aatgatcctt ccgcacatcg attagccggt ccaccaagag gaacggataa
     1381 cggtgcggga tcatggtcag gatctgcttg gtctcgatca gcgcaatatc gaccgggggc
     1441 aaatcagcac tctcgttcat cgtcagttcc ctgtttttgg ttccttgcgg ccaccctggg
     1501 ccagtttccg gagggtgatc acctcacgga agaaactctt cacattctgc gccggcgcgc
     1561 ccagcacttc ctcgcccgcc ggcacatcct gcatcacacc cgattgcgcg cctatgcgcg
     1621 ccccggcgcc gatattgaga tgcccggtca gccctgcctg cgccgcgatc atcacgcccg
     1681 gcccaatctg ggtcgaaccc gaaacgcccg cctgcgccac aataacgctg ttggcgccga
     1741 cattcacgtt atgtccgagt tgcacgagat tatcgacatg cacgcccggt ccgatcaccg
     1801 tatcctggac cgagccgcga tcgatggtgc tattcgcccc aatctccgcg ccatcgccga
     1861 tcagcacgcg gcccaattgc ggcaccggtg tgaagccggc tttggaaatg gcaaagccaa
     1921 acccgtcctg gccgatgcgc gcgcccggat acagcgtaac atgatcgcca agaatggcat
     1981 ggctcagcgt cacctgcgca tgaatgcggc aatccgcgcc aatgaccacg ccggggccga
     2041 caaagctcaa cggcccgatg ctcgtccccg ccccaatttt tgcacccgcg ccgatcacgg
     2101 cattggcccc cacttgcacg gtcgggtcca gttcagccga aggatcaatc accgcgctgg
     2161 gatgcacccc cggcagaggc tcgggaaacg ggaaaaacag cgtcagcacc cgcgcccagc
     2221 ccacataagg ctcctgcgtc ggcagcgcga tgcacccctc cggcacgcgc ccggcaaaat
     2281 caggatgcag gatcaccgcc ccggccttgg tctcggccag gagcggggca tagcgcttat
     2341 tatcgaggaa actcacatcc tccggcccgg cgctctgcag cggcgccgcg cccgagatat
     2401 accgctcgcc cgccgccacc tcgcagccca gcagggcggc gatggcggca agactatgcg
     2461 gcccggtgcg cgtgaagaaa cgcggatcac cgggtttggc agcctcttgc atgcttactg
     2521 gccttggtcc tgcggcggcg gggtgatggc catgccaggg gtgacgacgg aaggcggcac
     2581 cttcacgctc ggcagaagtt ggttcagctc cttcgccgtc tcgtcggtca ggtcgaaggc
     2641 ggcgacattc agcaccacct gctcgcgatg caggatcagg ttcatgccat gggcctgcgc
     2701 ctcctggcgg atgatgccaa tcagctcagc ctcaatctgc cccagggcgg cttggccggc
     2761 attctggatg gcctggttct tctcctggaa cttggtctg
//
LOCUS       DASQCV010000660         1816 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2627317, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000660 DASQCV010000000
VERSION     DASQCV010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2627317"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..802)
                     /locus_tag="VEQ16_10345"
     CDS             complement(<1..802)
                     /locus_tag="VEQ16_10345"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYP64281.1"
                     /translation="MSETILPLNGLKIVAHVSGVGAAYAARMLSTLGASCILLEGPEG
                     SPLRGEPPFLPGGKISALFAYLAAGMRSQIIDLSDNDGRAALGALLSTSDIFIDDTPV
                     VDRAALGLDDAAIAARHPALVHVSVLPFGAVGPKADWKAEDIQVQHASGEGYLLPNGL
                     SVEMFPDRPPVKIHGHFGAMQGGIAAALGALSALWARPECGGQYVDISCQDAMLSVGA
                     FAIQRLGDGSVEHRVERSFRYGGVIPCADGYVELLTLEQRQWDGLVKLL"
     gene            complement(952..>1816)
                     /locus_tag="VEQ16_10350"
     CDS             complement(952..>1816)
                     /locus_tag="VEQ16_10350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64282.1"
                     /translation="IRPGDRITAIERVVGVDVKQSEFSGTLVLQYVEASYANQRGELV
                     ARALGTCTRHERKAAREAGKYSDIKTHEYKPEEFDRIDAAILNEEKNIRGGNVRYWEE
                     VQEGEELPEIVRGPLSLMDTMGFLVGCGRGHTHGVIFKNAVKHPGHFFRNPEAGGGIE
                     YTGIGHHRESTAKEVGVPGVYDYGPQRSAWMASLVTNWMGDAAFLKRVRTQMRRFNTM
                     GDCTWARGKVTRKYVKDGHALVDIEIKGENQRGELTTPGLATVILPSLDPKIPVFFDG
                     RNLDLELPVVR"
BASE COUNT          374 a          612 c          507 g          323 t
ORIGIN      
        1 ccagcaattt caccagtcca tcccattgcc gctgctcgag cgtcagcagc tcgacatagc
       61 catcagcgca ggggatgacg ccaccatagc ggaaactgcg ctccactcga tgctcgaccg
      121 agccatcgcc caggcgctgt atggcgaagg cgcccacgga gagcatcgca tcctggcagg
      181 aaatatcgac atattgcccg ccgcattcgg gccgcgccca aagcgccgag agcgcgccca
      241 gggccgcggc aatgccgccc tgcatcgcgc caaaatggcc atgaattttc accggcggcc
      301 ggtccggaaa catctcaacg gatagaccat tcggcagaag atagccttcg ccgctggcat
      361 gctgcacctg aatatcctca gctttccaat cggcctttgg gccgacggcg ccgaagggca
      421 gcaccgacac atgcacaagt gccggatggc gcgcggctat cgccgcatca tcaaggccca
      481 acgccgcgcg atccacaacc ggcgtgtcgt cgataaagat atcactcgtg gacagcagcg
      541 cgcccaatgc ggcgcgccca tcattatccg acaaatcgat gatctgacta cgcatgcccg
      601 cggcgagata agcgaacaga gcagaaattt ttccacccgg cagaaaaggc ggctcacctc
      661 gcaaaggcga accctcaggc ccttccagca aaatacagct cgcacccagc gtggagagca
      721 tgcgcgccgc ataggcagca cctacgccgg atacatgggc cacgattttg aggccgttca
      781 aaggcaggat cgtttcactc atgggctgca ttgctctccc tcccctcttc aggaaaggaa
      841 ccagtttagc aattgaacga ggtccgccct tgcgggcggc gcctcacctt aaagccccgc
      901 acccccgccc gatttcatgc aagcgggagc gagaaccatt atccgatgcc cttagcggac
      961 gaccggcagc tcgagatcga gattgcggcc atcaaagaag accgggatct tcggatcgag
     1021 cgacggcagg atcaccgtgg ccaggcccgg cgtggtcagc tcaccgcgct ggttctcgcc
     1081 cttgatctcg atatccacca gggcgtgacc gtccttcaca tacttgcgcg tcaccttgcc
     1141 gcgcgcccag gtgcagtcgc ccatcgtgtt gaagcggcgc atctgggtac ggacgcgctt
     1201 gaggaaggcc gcatcgccca tccagttggt aacgaggctc gccatccagg cggagcgctg
     1261 cgggccgtaa tcatacacac ccggcacccc cacttccttg gcggtggatt cgcggtgatg
     1321 gccaataccg gtatattcga tgccgccacc cgcttccggg ttacggaaga aatgcccagg
     1381 atgcttcacg gcattcttga agatgacgcc atgcgtatgg ccgcggccgc aaccgacgag
     1441 gaagcccatc gtgtccatca gcgagagcgg gccacgcacg atttccggca gctcctcgcc
     1501 ttcctgcacc tcttcccaat agcgcacatt gccgccacga atattcttct cctcattgag
     1561 aatcgcggcg tcgatgcggt cgaattcttc cggcttgtac tcatgcgtct tgatgtcgct
     1621 atacttgccg gcttcgcgcg ccgccttacg ctcatggcgc gtgcaggtgc cgagcgcacg
     1681 ggcgacgagt tcaccgcgct ggttggcata gctcgcctcg acatattgca gcaccagcgt
     1741 gccggagaat tcgctctgct tcacatccac gccgaccaca cgctcgatcg ccgtaatgcg
     1801 gtcgccgggg cggata
//
LOCUS       DASQCV010000661         1599 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2462385, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000661 DASQCV010000000
VERSION     DASQCV010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2462385"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..690)
                     /locus_tag="VEQ16_10355"
     CDS             complement(<1..690)
                     /locus_tag="VEQ16_10355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020593798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HYP64283.1"
                     /translation="MDSGPIIQDVSDRVRSIELAWIPMPDGRRLAARLWLPIDAEQRP
                     VPAVLEYIPYRRRDGTRLRDEETHSWVAAQGYACARVDIAGSGDSDGLLLDEYLKQEQ
                     DDAIEIIAWLAAQPWCSGEVGMIGISWGGFNGLQVAARRPPALKAVISIASTVDRYAD
                     DVHFMGGCLLADNMDWGAAFFTYAALPPDPLMVGEAWRRQWLARLEALRPFPPLWLAH
                     QRRDDFWRHGSV"
     gene            complement(701..1342)
                     /gene="betI"
                     /locus_tag="VEQ16_10360"
     CDS             complement(701..1342)
                     /gene="betI"
                     /locus_tag="VEQ16_10360"
                     /inference="COORDINATES: protein motif:HMM:NF001978.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator BetI"
                     /protein_id="HYP64284.1"
                     /translation="MVNARLRSFRRNELIEATIAAISKGGLQDTTLATIGRHAGLSPA
                     LVNHYFDGKEALLEATMRRLMRNLGEDIARRLPAAPTPLARLHAVIDGCFSRRHFLPD
                     SMGAWLTFWLEVRRDPRFARLQRVLNRRFESNIMFALRQLVAEPLAEDIFLGLTALID
                     GFWWAYAIDAKRIQPARARRLCRDYLSSRLPPPKARRRAAKPAALRRTAKARS"
BASE COUNT          263 a          525 c          571 g          240 t
ORIGIN      
        1 gacggagcca tgacgccaga aatcatcgcg ccgctgatgg gccagccaaa gtggtgggaa
       61 ggggcgcagc gcctcgagcc gggcgagcca ttggcggcgc caggcttcgc cgaccatcag
      121 gggatcgggc ggcagcgcgg cataggtgaa gaaggccgcc ccccaatcca tgttgtcggc
      181 caagaggcag ccgcccatga aatgcacatc atcggcatag cggtcgacgg tcgaggcgat
      241 ggagatcacc gccttcaggg ccggcggacg gcgcgccgcc acctgcagcc cgttgaagcc
      301 gccccaggag atgccgatca tcccgacttc cccgctgcac cagggctgcg cggccagcca
      361 ggcgatgatc tcgatggcgt cgtcctgctc ctgcttcaga tattcgtcga gcagcagccc
      421 gtcggaatct ccgcttcccg cgatgtcgac ccgggcgcag gcatagccct gggccgcgac
      481 ccaggaatgg gtctcctcat cccggagacg ggtgccgtcg cgccggcgat aggggatgta
      541 ttccaggacc gccggcaccg gcctctgctc ggcatcgatc ggcagccaga gccgcgccgc
      601 caggcgcctt ccatccggca tggggatcca ggcgagctcg atgctgcgga cgcggtcgga
      661 gacgtcctgg atgatcgggc ccgaatccat gtgcgccgcc tcagctccgg gccttcgcgg
      721 tccgccgcag ggcggccggt ttcgccgccc tccgtcgggc cttgggcggg ggaagccggc
      781 tcgagagata gtcgcggcag aggcgccgcg cgcgggccgg ctggatccgc ttcgcatcga
      841 tggcataggc ccaccagaag ccgtcgatga gggccgtgag cccgaggaag atgtcctccg
      901 ccaaaggctc ggcgacgagc tggcgcagcg cgaacatgat gttggattcg aagcgccggt
      961 tgagcacccg ctgcagccgg gcgaagcgcg ggtcgcggcg cacctcgagc cagaaggtga
     1021 gccaggctcc catggaatcg ggcaggaaat gccggcgcga gaagcagcca tcgatgacgg
     1081 catggaggcg cgcaagcggc gtcggcgcgg cgggcaggcg ccgggcgata tcctccccga
     1141 gattgcgcat gaggcggcgc atggtcgcct ccagcagcgc ctccttgccg tcgaaatagt
     1201 ggttcaccag ggccggcgac aagccggcat ggcgcccgat ggtggcgagg gtcgtatcct
     1261 gcagcccgcc cttggagatg gcggcgatcg tggcctcgat cagctcgttg cggcggaagc
     1321 tgcgaagccg cgcgttcacc atgaatgacg ccccccgaat gacgcccctc ttgactcccg
     1381 gcgctgctcc tgccgagaga tttattgttc gattgaacaa tccgctgttt acgctgtcaa
     1441 cgtgcttgcg tcatagtccc tgccgggacg gggaggagtg cgggtgatgg gcgagaaaga
     1501 ggctccggcg caggtctggc gtggcgactg gctgtttccg acggagatcc gcttcggcgc
     1561 cggccgtctc gtggagctga gcaaggcctg ccgccgcct
//
LOCUS       DASQCV010000662         1851 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2296507, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000662 DASQCV010000000
VERSION     DASQCV010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2296507"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            289..453
                     /locus_tag="VEQ16_10365"
     CDS             289..453
                     /locus_tag="VEQ16_10365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64285.1"
                     /translation="MPANMLKIEAELRHAVIDRLIAASLNEGKPAREATLERWRALNN
                     KPSLPDGAGA"
     gene            complement(507..1184)
                     /gene="msrA"
                     /locus_tag="VEQ16_10370"
     CDS             complement(507..1184)
                     /gene="msrA"
                     /locus_tag="VEQ16_10370"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HYP64286.1"
                     /translation="MRRLSGICLGLALLARASGAEAAPAPAFDPPVTAPQEVAILSGG
                     CFWGMQGVFEHVKGVRQVLAGYTGGAADTAQYEMVSTGSTGHAESVRIVFDPHVISYG
                     KLLQIFVTVAADPTQLNYQGPDQGTQYRSEIWYAPADQQQQIAQAYLAQLTQAKTFPA
                     PIVVRLDPAKPFYPAESYHQDFLVLHPDNPYIAYNDLPKLQALQAQFPQFYLAQPVRV
                     TAGAVGD"
     gene            1270..1680
                     /gene="msrB"
                     /locus_tag="VEQ16_10375"
     CDS             1270..1680
                     /gene="msrB"
                     /locus_tag="VEQ16_10375"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HYP64287.1"
                     /translation="MSTETKTEFPVTHTEEEWRRLLTPEQFAVLRGHGTERPGSCALN
                     YEKRAGSFSCAGCGQLLFVADKKFESGTGWPSFNTPVEGSVGTNLDRSHGMIRMEVHC
                     NRCGGHLGHVFEDGPPPTGLRYCINGVAMNFEPA"
BASE COUNT          388 a          586 c          547 g          330 t
ORIGIN      
        1 agccgcgcaa ccggccagac cggcaagccc gaaaccaaat gccaaaaatc ggaaaataac
       61 gtggcctgcc atacaaactc taaaaagaga cgagcttttt attgcgtata acaaaacata
      121 aatgaattgc tatggggtaa agaaggtttt ccacgacaaa tatgctgcaa cgccaaaatt
      181 taatgtcata atcgcttcaa gagctcgcct tattcatgcc tttgttgcgg ttcactgtca
      241 taagcatgga cggttcccgt ccagtccctt gtctgatgga gtgcctgaat gcccgcgaac
      301 atgctcaaga tcgaagctga attgcgccac gccgtcatcg accggctgat cgcggcaagc
      361 ctgaacgaag gcaagcccgc ccgcgaggcg acgctagagc gctggcgcgc cctcaacaac
      421 aagccgtctc tgccggacgg cgcgggcgcc taatcgcccc ccggcgccca gagggcgcct
      481 aatctcccac cgcgcccagc gggtgcctaa tctcccaccg cgcccgctgt caccctgacc
      541 ggctgggcca ggtaaaattg cggaaattgc gcctgcagcg cctgtaattt cggaagatcg
      601 ttataggcga tgtagggatt gtccggatgc aggacgagaa aatcctggtg gtaggactcg
      661 gccggataaa acggcttggc cgggtccagc cggacgacga tgggcgccgg gaaggttttt
      721 gcctgcgtca gctgcgccag ataggcctgg gcaatctgct gctgctggtc agccggcgcg
      781 taccagattt cggagcggta ctgcgtaccc tggtccggcc cctggtaatt gagctgcgtc
      841 gggtcggcgg cgactgtcac gaatatctgc aacaatttgc cgtagctgat gacatgcggg
      901 tcgaagacga tcctcaccga ctcggcatgg ccagtgctgc cggtggacac catctcatat
      961 tgcgccgtgt ccgccgcccc gcccgtatag ccggccagca cctggcgcac ccctttcaca
     1021 tgctcgaaca caccctgcat gccccagaaa cagccgcccg agaggatggc cacctcctgc
     1081 ggcgccgtca ctggcgggtc gaaagccggc gccggcgcgg cctctgcccc gcttgcccgc
     1141 gccaggagcg ccagccccag acaaatccct gaaagccgtc tcatcgaatc ctcactttga
     1201 tgccgtgtat ccagctcctt atatagggac gatccgccgc cgatgcgtgg gcagacaagg
     1261 gagaaaccta tgagtaccga gaccaagacc gaatttccgg tgacccatac cgaagaggaa
     1321 tggcgccgcc tgctgacgcc cgagcaattc gccgtgctgc gcgggcatgg cacggagcgg
     1381 ccgggcagct gcgcgctgaa ttacgagaag cgggccggca gcttctcctg cgccgggtgc
     1441 ggccagctcc tgttcgtcgc ggacaagaaa ttcgagagcg gcacgggctg gcccagcttc
     1501 aacacaccgg tggaaggctc cgtcggcacc aacctcgacc gcagccatgg catgatccgc
     1561 atggaggtgc attgcaaccg ttgcggcggc catctcggcc atgttttcga ggacggcccg
     1621 ccgcccaccg gcctgcgcta ttgcatcaat ggcgtggcga tgaatttcga gccggcctga
     1681 gcaataaaaa aaacctgccc tggtcgccca gggcaggttc gcaaaaatcc gtttgcgggg
     1741 gcgattagcc ctggatggcg acgatgccgt tcgagccggc gagcgtgtga accgcgccca
     1801 tctcctgcag tgtcaggccc ttcatcacga tattggtgcc atcggacagg g
//
LOCUS       DASQCV010000663         2372 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_473491, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000663 DASQCV010000000
VERSION     DASQCV010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473491"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..379
                     /locus_tag="VEQ16_10380"
     CDS             <1..379
                     /locus_tag="VEQ16_10380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015072199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0051304 - chromosome separation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HYP64288.1"
                     /translation="LDLLLENGLVTPKGRKESPGRPTLWGTTPAFLAQFGLNDLRDLP
                     KREELLIDPTGPALKEPEPVLTGRQEEPQEVPPPAPETLPAEPPQVPPPPAEAPEPAP
                     QEVPVPAPAPEPAPPEGGAETAP"
     gene            376..1050
                     /locus_tag="VEQ16_10385"
     CDS             376..1050
                     /locus_tag="VEQ16_10385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003839 - gamma-glutamylcyclotransferase
                     activity [Evidence IEA];
                     GO_function: GO:0061928 - glutathione specific
                     gamma-glutamylcyclotransferase activity [Evidence IEA];
                     GO_process: GO:0006751 - glutathione catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HYP64289.1"
                     /translation="MKITRDTLINGSLMAQHRRHADEHPDMRWRTEAEMALTLENMLA
                     QHPQDEDLWVFGYGSLIWNPAFDYAERRCALLRGWHRRFCLKLYSGRGTLDNPGLVLA
                     LDRGGACRGVAFRIAAGKVRQELNLLWQREMFGGSYNARWVKLVPARERHGEPFRALT
                     FVINHAHPRYMPELSVEQTAEFIASACGEWGSCREYLENTVAHLGELGVRDKNLNRIV
                     AALPKP"
     gene            1072..1530
                     /locus_tag="VEQ16_10390"
     CDS             1072..1530
                     /locus_tag="VEQ16_10390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatB"
                     /protein_id="HYP64290.1"
                     /translation="MFGFSWGEIGIIMAVALIAIGPKDLPVAIRTVTGLIKKARGLAA
                     EFQGHVDEMMREANVTDVVSDLKKATSVTRTIPADIAKTLGADGLISASIKDMDALMA
                     KAMTSTTTSAVPAEVVEEQVPNAPAFIPPEAARKAPVPAFIPPGTKRWGF"
     gene            1531..2325
                     /gene="tatC"
                     /locus_tag="VEQ16_10395"
     CDS             1531..2325
                     /gene="tatC"
                     /locus_tag="VEQ16_10395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HYP64291.1"
                     /translation="MTDSPVNDGDEINDKEMPLLEHLAELRVRLMWSAGTFILVFIAC
                     YHFAAQLYDFLAAPLAHALKARGEKPELIYTALFEAFFTYVKVAAFSAAFISFPMIAA
                     QIWLFVAPGLYKKEKRALLPFLIVTPILFFAGGAVAYYGFFPIMFKFFLSFQNTSPGA
                     DVQISLLAKVSDYLNTTMKVIFAFGLAFELPVLLTLLGRVGIISAAGLRKYRRYAIVG
                     CFIAAAVLAPPDVPSQLLMATLLWGLFEISVFAVRMVEPKLDQQNA"
BASE COUNT          415 a          814 c          723 g          420 t
ORIGIN      
        1 gctcgatttg ctgctggaaa acgggctggt cacgccgaaa ggccgcaagg aaagccccgg
       61 ccgccccacc ctgtggggca ccacccctgc cttcctggcg caatttgggc tcaacgatct
      121 gcgcgatctg cccaagcggg aggaattgct tatcgacccc accggcccgg ccctgaagga
      181 gcctgagccc gtgctcaccg gacggcagga agaaccgcag gaagtcccgc cgcccgcgcc
      241 ggaaacactg cctgcggaac cgccacaagt gccgcccccc cctgccgaag cgccggaacc
      301 ggcaccacag gaggtacccg ttcccgcgcc agcccccgag cctgccccgc cggagggagg
      361 tgcagaaacc gcgccatgaa gatcacgcgc gacaccctca tcaatggcag cctgatggcg
      421 cagcatcgcc gccatgccga cgagcacccg gacatgcgct ggcgcaccga ggcggagatg
      481 gcgctcaccc tcgaaaacat gcttgcccag cacccgcagg atgaggattt atgggtgttc
      541 ggctatggct cgctcatctg gaacccggcc ttcgattatg ctgagcggcg ctgcgccctc
      601 ttgcgcggct ggcacaggcg cttctgcttg aaactctatt cggggcgggg cacgctggat
      661 aatcccggtc tcgtgctggc gctggaccgc ggcggcgcct gccgcggtgt cgccttccgc
      721 atcgccgccg gcaaggtgcg ccaggagctc aatctgctct ggcagcgcga gatgttcggc
      781 ggctcctata atgcgcgctg ggtcaagctg gtgccggcca gggagcgcca tggcgagccc
      841 ttccgcgccc tcaccttcgt catcaaccac gcccatccgc gctatatgcc cgagctgtcc
      901 gtggagcaga ccgccgaatt catcgcctcc gcctgcggcg aatggggcag ctgccgcgaa
      961 tatctggaaa ataccgtggc gcacctgggc gagctcggcg tgcgggataa aaacctcaac
     1021 cgcattgtgg cggctttgcc gaagccgtga gagcctgcta agcccggcgc catgtttgga
     1081 ttttcgtggg gagagatcgg gatcatcatg gccgtggcgc tcatcgccat cggcccgaag
     1141 gacctgcccg ttgccatccg caccgtcacc ggcctgatca agaaggcgcg tggcctcgcc
     1201 gccgaattcc agggccatgt cgacgagatg atgcgcgagg ccaatgtcac cgacgtggtg
     1261 agcgacctga aaaaagccac cagcgtgacg cgcaccatcc ccgcagacat tgccaagacg
     1321 ctcggcgcgg acgggctcat cagcgcctcc atcaaggaca tggacgcgct gatggccaag
     1381 gcgatgacca gcaccaccac atccgccgtg ccggcggaag tggtggagga gcaggtgcca
     1441 aacgcccccg ccttcatccc gcccgaggcg gcgcgcaaag cccccgtgcc ggctttcatc
     1501 ccacccggca ccaagcgctg gggattttaa atgacggatt ctcccgtgaa tgacggcgac
     1561 gagatcaacg acaaggaaat gccgctgctt gagcatctgg ccgagctgcg cgtgcggctg
     1621 atgtggtcgg cgggcacgtt tatcctcgtc ttcatcgcct gctaccattt tgccgcgcag
     1681 ctttacgatt tcctggcggc cccgctggcg cacgcgctga aagcccgcgg cgagaagccg
     1741 gagcttatct acaccgctct gttcgaggcc ttcttcacct atgtgaaagt cgccgccttc
     1801 tctgccgcct tcatctcctt ccccatgatc gcggcgcaga tctggctgtt tgtggcgccg
     1861 ggcctgtaca agaaggaaaa gcgcgcgctg ctgcccttcc tcatcgtgac acccatcctg
     1921 ttcttcgccg gcggggcggt cgcctattat gggttcttcc ccataatgtt caaattcttc
     1981 ctctccttcc agaacacatc gccgggcgcg gatgtgcaga tctcgctgct ggccaaggtg
     2041 agcgactatc tcaacaccac catgaaggtg atcttcgcct tcggcctcgc cttcgagctg
     2101 ccggtgttgc tcacgctgct gggccgcgtc ggcatcatca gcgccgcggg cctgcgcaaa
     2161 taccggcgct acgccatcgt cggctgcttc atcgcggcgg cggtgctggc gccgccggat
     2221 gtgccgagtc aactcttgat ggccacgctg ctctggggcc tgttcgaaat ctccgtgttc
     2281 gccgtgcgca tggtggaacc caagctggat caacagaatg catgacatca aattggtccg
     2341 cgaggacgcg gcgggcttcg acgcggccct cg
//
LOCUS       DASQCV010000664         1501 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2296715, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000664 DASQCV010000000
VERSION     DASQCV010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2296715"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..292)
                     /locus_tag="VEQ16_10400"
     CDS             complement(<1..292)
                     /locus_tag="VEQ16_10400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HYP64292.1"
                     /translation="MKFSLSWLKTWLETDASLEQITTTLSAIGLEVEGVENKADTLKP
                     FVIAEILEATRHPNADKLQACRVSAGDAELSVVCGAPNARTGLKVVLAPVGAV"
     gene            complement(297..1349)
                     /gene="pheS"
                     /locus_tag="VEQ16_10405"
     CDS             complement(297..1349)
                     /gene="pheS"
                     /locus_tag="VEQ16_10405"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HYP64293.1"
                     /translation="MLGDELTNIRQTALPAIAAADAASLEELRVALMGKTGSVTQLLK
                     SLGAMEAEARKAAGAEINQLKSEITEALTARRLVLDEATLAQKLAAERLDVTQPPRQE
                     PAGAIHPLSRTMEEIAAIFSAMGFAIKEGPDIESDWNNFSALNIPSHHPARAMMDTFY
                     LTGGEVLRTHTSPVQIRTLLNEQPPIRIIVPGRTFRSDHDATHSPMFHQCEGLVIGED
                     ITLGHLKGCLTDFLSAYFDVPNLPVRLRSSYFPFTEPSMEVDIGWSKKTGEIGGGTDW
                     LEIGGSGMVHPNVLANCGIDPRKYQGFAFGVGLERLTMLKHGIADLRLFYESDVRWLR
                     HYGFSPLSPATLHEGF"
BASE COUNT          278 a          408 c          508 g          307 t
ORIGIN      
        1 tgacggcgcc gaccggggcg agcacgactt ttaatccggt gcgcgcattg ggggcgccgc
       61 acacaactga caattcagcg tcgccggcgg agacgcggca ggcctgaagt ttgtcggcat
      121 tggggtggcg cgtggcttcg aggatttcgg cgatgacgaa gggcttcagc gtgtcggcct
      181 tgttttccac gccttccact tccagcccga tggcggacaa agtggtggtg atctgctcca
      241 gcgacgcatc tgtctccagc caggtcttca gccatgagag agagaatttc atgggatcaa
      301 aaaccttcgt gcagggtggc gggagagagg ggcgaaaaac cgtaatggcg cagccagcgc
      361 acatcgctct catagaagag acgcagatcg gcaatgccgt gcttgagcat ggtcaggcgc
      421 tccagcccga cgccgaaggc aaagccctga tatttgcgcg ggtcgatgcc gcaattggcc
      481 agcacgttgg gatgcaccat gccggagccg ccgatttcca gccagtccgt gccgccgccg
      541 atttcgccgg ttttcttgct ccagccgata tcgacctcca tcgagggctc ggtgaagggg
      601 aaataggacg agcgcaggcg cacgggcagg ttgggcacgt cgaaataggc ggagaggaaa
      661 tcggtgaggc agcctttgag atggccgagt gttatgtcct cgccgatgac cagcccttcg
      721 cattgatgga acatcgggct gtgcgtggcg tcatggtcgg agcggaaggt gcggccgggg
      781 acgatgatgc ggatgggcgg ctgttcgttc aacagcgtgc ggatttgcac cggcgaggtg
      841 tgggttcgca gaacctcgcc ccctgttaga taaaatgtat ccatcatcgc acgtgctgga
      901 tgatggctcg gaatattaag ggcagagaaa ttattccagt ccgactcgat gtccggccct
      961 tccttgatgg cgaatcccat ggcgctgaag atcgctgcga tctcttccat tgtgcgggag
     1021 agcggatgga tggcaccggc aggttcctgg cggggcggct gggttacgtc gagccgctcg
     1081 gcggcgagtt tttgcgccag ggtggcctcg tccagcacaa ggcggcgggc ggtgagcgcc
     1141 tcggtgattt cgctcttgag ctggttgatc tcggcaccgg ctgccttgcg ggcctcggcc
     1201 tccatggcgc ccagtgattt cagaagctgc gtcacgctgc cggttttgcc catcagggcg
     1261 acgcgcagct cctctagcga agccgcatcg gctgccgcga tggcggggag tgcggtttgc
     1321 cgtatgttgg tcagctcatc gcccagcatg ttcgtcatct gtccttatat tcagtcccgg
     1381 tacttgaggg gcagggcaga catgggcggg ggtaaaatgt caagccgtgt ttggcggtcc
     1441 aaacatggcc aagtcatgac atcccaggca aggaggtgtt actaattatc aacaggcgcc
     1501 g
//
LOCUS       DASQCV010000665         3445 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1963702, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000665 DASQCV010000000
VERSION     DASQCV010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3445
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1963702"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..357)
                     /locus_tag="VEQ16_10410"
     CDS             complement(<1..357)
                     /locus_tag="VEQ16_10410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002363359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64294.1"
                     /translation="MPKSGRTYGQDILKGEYNGISGEGLGKRFRHSNAETRAAKAATP
                     GGGTGPNSAYLFKTEEGYKKGAEAQASGAGTSIFDPVLCELAYAWWCPPGGLVLDPFA
                     GGSVRGIVAAMMRRRYR"
     gene            complement(359..577)
                     /locus_tag="VEQ16_10415"
     CDS             complement(359..577)
                     /locus_tag="VEQ16_10415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64295.1"
                     /translation="MIEIVLTVCAIADPKNCHDERIPILKESITLLQCIMNAPGAIAD
                     TKRQWQIERPGWRIAGYLCREATAEKDA"
     gene            complement(689..2131)
                     /locus_tag="VEQ16_10420"
     CDS             complement(689..2131)
                     /locus_tag="VEQ16_10420"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HYP64296.1"
                     /translation="MKVELWPIERPKPYDKNPRKITERAIDKVAASIREFGFRQPLVC
                     DAKDTVIVGHKRLLGAKKLGLSRVPVTVAADLSPAQIKAYRLADNRTADETEWDDDLL
                     SQELADLDSMGWDLGLTGFDPIEISALRDPAGDPRETLAERFLVAPFSVLNAREGWWQ
                     ARKAAWIALGIESELGRGGNLLRMSDTILDPDGALGINPRARAAPAAALTPCEPAIHG
                     GEPIWLKRDDLFEFGGAIGGKARACAAIAQAAPPPKGLITAGSRASPQINIVAQIAKH
                     LGIPCRAHCPQGELSPELRAARAAGAEIVQHPGGRNSVITARARADAAARPGWREIPF
                     GMEHPAAIAQTAAQCANLPHAATRLVVPIGSGMTLAGILAGMQRFGFGFPILGIQCGA
                     DPARRLDRWAPPGWRAIVTIAKPPEDYHAECRAKAAGVELDWHYEAKCARFLKPGDCL
                     WIVGIRATQAPRLAAGAAQEAHLAPGAAGP"
     gene            complement(2128..2382)
                     /locus_tag="VEQ16_10425"
     CDS             complement(2128..2382)
                     /locus_tag="VEQ16_10425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64297.1"
                     /translation="MHFFPHRGHHPEWHFGPHAAIIIRLHPNDPRIANIYFVGPKGET
                     GSYADIPHRSMRPECLPLSAWLGHAMPPSSHWAYPEESSP"
BASE COUNT          493 a         1072 c         1215 g          665 t
ORIGIN      
        1 gcggtagcgg cggcgcatca tcgccgcgac gatgccgcga accgagccgc cggcgaaggg
       61 gtcgagcacc aggccgccgg gcgggcacca ccaagcgtaa gccagctcgc agagcaccgg
      121 gtcgaagatg ctggtgccag cgccggaagc ctgcgcctcc gcgccctttt tatacccttc
      181 ttccgttttg aaaagataag cgctattcgg cccggtgccg ccgcccggcg tcgccgcctt
      241 ggcggcccgc gtttcagcat tgctatggcg gaagcgcttg ccgagccctt cgccgctgat
      301 gccgttatat tcgcctttca agatgtcctg cccgtatgtg cgcccgcttt tcggcatgct
      361 aggcgtcctt ttccgcggtc gcctcgcggc agaggtagcc cgcgatgcgc cagcccggcc
      421 gctctatctg ccactggcgc ttggtgtcgg cgatcgcgcc gggcgcgttc atgatgcatt
      481 gaagcagggt gatgctctcc ttcaagatcg ggatgcgctc gtcatggcaa ttcttggggt
      541 cggcgatggc gcagactgtc agcacgattt cgatcatacc cagctcccgt cgtcgtcgat
      601 gtgcggcccc gcgggcggca ggtcgaaggc gcaatggtgg cgtcgcaaat tgccggccca
      661 gaacaaaatg tcgaagaaaa cccgcccctt atggtccggc ggcccccggc gcaagatgcg
      721 cttcttgtgc cgctcccgcg gccagtcttg gggcttgggt cgcccggatt ccgacgatcc
      781 agaggcagtc gcccggcttg aggaagcgcg cgcatttggc ttcatagtgc caatccaatt
      841 ctacgccggc cgctttagcg cggcattccg cgtggtagtc ctccggcggc tttgcgatgg
      901 tgactatagc gcgccagccg ggcggtgccc agcggtctag ccgccgagcc gggtccgccc
      961 cgcattggat cccaaggatc gggaagccga agccgaatcg ctgcatgccg gccaggatgc
     1021 ccgccagggt catgccgctg cctatgggca cgaccaagcg ggtcgcggcg tggggcaggt
     1081 tcgcgcattg cgccgcggtc tgggctatcg ccgcggggtg ctccatgccg aaggggatct
     1141 cgcgccagcc ggggcgggcc gcggcgtcgg cgcgggcgcg ggcggttatc accgagttgc
     1201 gcccgccggg gtgctggacg atttctgcgc ccgcggcgcg ggcggcgcgc agctccgggc
     1261 ttagctcgcc ttgcgggcag tgcgcccggc atgggattcc aaggtgcttg gctatctgcg
     1321 ccacgatgtt gatttgcggg ctggcgcggc tgcccgccgt gatgagtccc ttgggcggcg
     1381 gggcggcttg ggcgatggcg gcgcatgcgc gcgctttgcc gccgatcgcg ccgccgaatt
     1441 cgaacaagtc atcccgcttc agccaaatcg gctcgccgcc gtggatggcg ggctcgcaag
     1501 gggttagggc ggcggccggg gcggcgcggg cgcgggggtt gatccccagc gcgccgtccg
     1561 ggtccaggat ggtgtcgctc atgcgcagca agttgccgcc ccgccctaat tcgctttcga
     1621 tgcccaatgc gatccaagcc gccttccgcg cctgccacca cccctcgcgg gcgttgagga
     1681 cgctgaatgg cgcgaccagg aagcgctcgg ctagggtctc gcgggggtcg cccgccgggt
     1741 ccctaagcgc ggaaatctcg atcgggtcga agccggtcag ccccaagtcc cagcccatgg
     1801 agtccaggtc cgccagctct tgggatagga ggtcatcgtc ccattcggtt tcgtccgccg
     1861 tccggttgtc cgccagccgg tacgccttga tttgggcggg gctcaaatcc gcggcgacag
     1921 tcaccgggac tcggcttaat cccagctttt tagcccctaa aagccgttta tgtccgacga
     1981 ttaccgtgtc ttttgcgtcg caaaccaggg gctggcggaa gccgaactcg cggatgctgg
     2041 cggcaacttt gtcgatggcg cgttcggtga ttttgcgcgg gttcttgtcg taaggcttgg
     2101 gccgctcgat cggccacagc tcgaccttca tggggatgat tcttccgggt aagcccaatg
     2161 gctgcttggc ggcatggcgt ggcccagcca agcgcttagg ggcaggcatt cggggcgcat
     2221 gctgcggtgc ggaatgtcgg cgtagctgcc ggtttcgccc ttcgggccga cgaagtagat
     2281 gttcgcgatg cgggggtcat tggggtgaag ccggatgatg atggcggcgt gcggcccgaa
     2341 atgccattcg gggtggtgcc cgcggtgcgg gaagaagtgc acgaggtcgc cgattcgcgg
     2401 gagtcgtcca tggggcaagc ctgataaatc cggcggtatc ttgggcggct caggcccggg
     2461 gggcggcggg gggtgaatct ggcctatgcg gggatcgtcc atgtgtggaa tcggtgtgtg
     2521 gtgtcgtagt ttttgtgggg cgattgttgg attggtgggg gtgtggggta gttgtgaatg
     2581 gaggggtccg ggcgcgcctt tgccgctgag ccccaccctt acggggtccc gccctattgt
     2641 gactatcagg tcatgtgatg cctcgtcgca gcccgcgcgc ggcgcgccgc tcggctagct
     2701 tggcgttgtc catttggctt tctggctgac tggtcaggtc gccgcggctg tctgtcggcg
     2761 gtcagtctgt ctcccagtgc cggagcagtt gtctgactgt ccggcgcagc ccggcgcaag
     2821 tcggtctcca tggcggcaag cagccacccc atggtcggcg acccaagcgc cgaccagctc
     2881 tcgaccccac tatctaagcc attggctggg cttatatttt gcaccatgat ccgccttctt
     2941 ttttgctatg cgcaacgcgc aacgcaaccg gcaaaatgcc gcaccaacgg ggcggcgggg
     3001 ggagcgccaa atcgccgcat gcgaggacgg cgatttggcg ctgcgccgca agcagcttgc
     3061 aggcttgcgg caatcggatg gctgactctg gaccattccc caacgagact cggaggcaga
     3121 caggcgattg gacaccagga tagacacaaa tctgcttgct tggcaagcgg ggccgccgcc
     3181 gcgcccctag cgcatcctcg gacgggtgag ggttgattcg gacgcgacgg cttggcgcga
     3241 tcataggcgc gggccggccc gcgcgtcaag gcgggacgcc atggtccaaa gttctgcttg
     3301 ggaaccaacg gcttagccgc ggcatgcttg ctgggggaca gtcttcggtc ttcggtcttc
     3361 ggtctttggt ccaaaatcat tccccggaga gcggggatgg tcgcgcgcgc gcgatcgcgc
     3421 gcgaaggggg gcgcgtcttt tcggc
//
LOCUS       DASQCV010000666         2444 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_473545, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000666 DASQCV010000000
VERSION     DASQCV010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2444)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2444)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2444
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473545"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VEQ16_10430"
     CDS             complement(<1..293)
                     /locus_tag="VEQ16_10430"
                     /inference="COORDINATES: protein motif:HMM:NF013907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64298.1"
                     /translation="MDDRLILMGVIGKPHGVRGQVRVNVFAEGPEALETYTLTDRKGR
                     QFVLEWAHENVASLSLVTPAGQRRITDRNEAETLTNVELFAPRSALPETEEEE"
     gene            complement(309..656)
                     /gene="rpsP"
                     /locus_tag="VEQ16_10435"
     CDS             complement(309..656)
                     /gene="rpsP"
                     /locus_tag="VEQ16_10435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HYP64299.1"
                     /translation="MSVKIRLARGGAKKRPFYHIVIADANAPRDGKFIERVGTYNPML
                     PADHAERVTLKTERLAHWLSTGAQPTDRVARFLAKAELIKAPVRTEQTKQPQPKKKAQ
                     ERAAERAKAAAAA"
     gene            complement(716..2092)
                     /gene="ffh"
                     /locus_tag="VEQ16_10440"
     CDS             complement(716..2092)
                     /gene="ffh"
                     /locus_tag="VEQ16_10440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HYP64300.1"
                     /translation="MFDSLSGKFSDIFDRLRRRGSLSEADVNEALREIRLALLDADVA
                     LPVVKDFVAKVKEQAVGAEVLRSVSPGQMVVKIVNDALIEALGGMPVPLNLNAPAPIP
                     FLMVGLQGSGKTTSSAKIALRLKTRERKKVLLASLDTQRPAAQLQLEQLAQKAEIASL
                     PIIAGQTPLQIAQRAMDTARREVYDVVILDTAGRLSIDLALMEEVKSIRAAVNPAETL
                     LVVDAMTGQDAVTTATAFNDALAVTGIIMTRLDGDARGGAALSMRSVTGAPIKLAGMG
                     EKLDALDEFNPERIAGRILGMGDIVGLVEKAAANIDQQEAERLAKKMAKGKFDLEDYA
                     AQLKQISKMGSLSGIMGMLPGVGKIKQQLESANLETTVFKRHVAIIGSMTPSERRNPD
                     ILKASRKKRIASGSGTSVQEVNKLLKQFDDMSTMMKRMNKAGGAEAMMRQMQAAMGGM
                     KGGGRRPF"
BASE COUNT          429 a          817 c          740 g          458 t
ORIGIN      
        1 aactcttcct cctccgtctc cggcagcgcg gagcggggtg cgaaaagctc gacattagtc
       61 agggtctcgg cctcattacg gtcggtgatc cggcgctgac ccgcaggcgt gacgaggctg
      121 agcgaggcga cattctcatg cgcccactcc agcacgaact gccggccctt gcggtcggtc
      181 agcgtgtatg tttccagagc ctccggccct tcggcgaaaa cattcacgcg cacctggccg
      241 cgcacgccgt gcggtttgcc aatcacgccc atcaggatca accggtcgtc cacagcaccc
      301 tattctgatt aagcggccgc ggcggctttc gcgcgctcgg cggcacgctc ctgcgccttc
      361 ttcttcggct gcggctgctt ggtctgctca gtgcgcaccg gcgccttgat cagttcggcc
      421 ttggccagga agcgggcgac gcggtcggtc ggctgcgcgc cggtggagag ccaatgcgcc
      481 aggcgctcgg tcttcagcgt cacgcgctcg gcatggtcgg ccggcagcat cgggttatag
      541 gtgcccacgc gctcgatgaa cttgccatcg cgcggcgcgt tcgcgtcagc aatgacgata
      601 tgatagaacg ggcgcttctt ggcgccgccg cgggcgagac gaattttaac agacatagct
      661 actcctttga tttaactcga aaaccacaaa aactcacaaa attccacaaa acacctcaga
      721 agggccggcg tccgccgcct ttcatgcccc ccatggcggc ctgcatctgg cgcatcatcg
      781 cctccgcgcc gccggccttg ttcatgcgct tcatcatggt cgacatgtcg tcgaactgct
      841 tcagcaattt attcacctcc tgcacggagg tgcccgagcc ggaagcgatg cgcttcttgc
      901 ggctggcttt cagaatgtcc gggttgcgcc gctcggaagg cgtcatcgag ccgatgatgg
      961 cgacatggcg cttgaacacc gtcgtctcca gattggcgct ctcaagctgc tgcttgattt
     1021 tccccacgcc cggcagcatg cccatgatgc ccgagagcga gcccatcttc gaaatctgct
     1081 tcagctgggc agcgtaatct tccaggtcga acttgccctt cgccatcttc ttggcgagcc
     1141 tctcggcttc ctgctggtcg atattggccg cggccttctc caccagcccg acaatatcgc
     1201 ccatgcccag gatgcgcccg gcgatgcgct ccgggttgaa ttcatccagc gcgtccagct
     1261 tctcgcccat gccggcgagc ttgatgggcg cgccggtgac cgagcgcatg gagagcgccg
     1321 caccgccgcg cgcatcgcca tcgaggcgcg tcatgatgat gccggtgacg gcgagcgcgt
     1381 cattgaaggc ggtggcggtg gtgacggcgt cctggccggt catggcgtcc accaccagca
     1441 gcgtttccgc cgggttcacc gcggcgcgga tggatttcac ctcttccatc agcgcgaggt
     1501 cgatggagag acggccggcc gtgtcgagaa tgacgacgtc gtagacttcg cggcgggcgg
     1561 tatccatggc ccgctgcgcg atctgcaacg gcgtctggcc cgcgatgatg ggcagcgagg
     1621 cgatttcggc cttctgcgcc aactgttcca gctgcagctg cgcggcgggg cgctgtgtat
     1681 ccaggctcgc cagcagcact ttcttgcgct cgcgcgtctt gaggcgaagc gcgatcttgg
     1741 ccgagctggt cgtcttgccc gagccctgca acccgaccat cagaaaggga atcggcgccg
     1801 gagcgttgag gttcagcggc accggcatgc cgcccagggc ctcaatcagc gcgtcattga
     1861 cgatcttgac gaccatctgg ccgggcgaga cggagcgcag cacctcggcg ccgaccgcct
     1921 gctccttcac cttggcgacg aaatccttca ccaccggcag agcgacgtcg gcatcgagca
     1981 gcgccaggcg gatttcccgc agcgcttcgt tcacatcggc ttcggacaag ctcccgcggc
     2041 ggcggagccg gtcaaaaata tccgaaaatt tgcccgacag gctgtcgaac atgggctaaa
     2101 tatccttctc gcgcgccata ggcgcgacat aatctagcgc gccataggcg cgacacaacg
     2161 caaaacgcgc cgtggtgcga accctcgcag cacggcggtt gatgttgccg ggctcttgcg
     2221 cccaagccgg gggagagtca agcgcgcgcc acgccagcca tgtcaaatca gcccatgcca
     2281 aatcagccca tgccaaatca gcccatgtca aaccaaccag gagggaagat gccatgatcc
     2341 aggaggtttt ctgccagctg cgcccctata gcgcggcgaa ggcgatcgat ttctacaaag
     2401 ccgccttcgg tgccatcgag cgcttccggc tgaacgaagc cacc
//
LOCUS       DASQCV010000667         4713 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1964201, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000667 DASQCV010000000
VERSION     DASQCV010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4713
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1964201"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            158..670
                     /locus_tag="VEQ16_10445"
     CDS             158..670
                     /locus_tag="VEQ16_10445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64301.1"
                     /translation="MTRKLLTCAASFLFILVWGQSLPGQSAPLCDLRPASSWYTTITA
                     GDYRLLFDDDADLGASPQIEHAQHGNSFVTDTNSFRIAGPNGTCWASPEVGIVTMPVF
                     IANGRTLYIPTYSGSNAYLFAVDAPSCKTLWQSPGLDGGLPTRKPYGFFLPGVGRVFI
                     GADCLPRITP"
     gene            complement(679..1383)
                     /locus_tag="VEQ16_10450"
     CDS             complement(679..1383)
                     /locus_tag="VEQ16_10450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding SYLF domain-containing protein"
                     /protein_id="HYP64302.1"
                     /translation="MKRLLLAAALAMAPVSSALADTPQHLVDSSTLALEDLVDGTGGS
                     QVQYLLRHAKAVVICPNIFRGGFIFGGEGGACVMSGRSADGSWSYPALYSLGSGSFGL
                     QIGIQNAEVMMLIMTDGGLNALMNSQFKIGGDAGLTVATFGAGVNGSMSTALNADIIS
                     VSKSQGLYGGLTFAGSILSNDGNAQQQYYGQDLNARQIVVDGQGQNPGANPLRTLLGR
                     YSASQPAPAQAAQQAQ"
     gene            complement(1405..2070)
                     /locus_tag="VEQ16_10455"
     CDS             complement(1405..2070)
                     /locus_tag="VEQ16_10455"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HYP64303.1"
                     /translation="MHKFWFVRHALVHPAALATLYGTEDVPICDETMQAQGARYAALA
                     ARLPRPARFICTPLSRTQVTAGALFRAGYPEQTPLIDPAFIEQDFGALQGLPMASFDT
                     RHADERHPFWPIHAAETPPGGESFSHLITRVGQGMEALLESVSGENTIIVSHGGAIRA
                     ACAFALDLTPHQALCLQIDNISLTQIERNKRGWRVLSVNEHPSTQACEKAEARPARSV
                     NAA"
     gene            complement(2073..2879)
                     /locus_tag="VEQ16_10460"
     CDS             complement(2073..2879)
                     /locus_tag="VEQ16_10460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP64304.1"
                     /translation="MRSDMSARRIWGLIYRHACMYRRSWPRLAEIVYWPTLTMLIWGF
                     TSSYIVHAHAGPRALAAGALIGGVLLWEITLRSQMGVTVGFLEEIWSRNLGHLFVSPL
                     RPAELIGALLIVSVLRTVFGLFPATIIAYLLYYYDIFAPGLIMLVFFANLLVMGWWMA
                     LGIVSLLFRYGAGAEALAWTLAFGITPLACVYYPVASLPIWLQPFAQILPASYIFEGM
                     RAAIAGQAPHWGQLGFAIALNIAWMLASIAVFAGEFRRARVRGALISIGE"
     gene            complement(2887..3615)
                     /locus_tag="VEQ16_10465"
     CDS             complement(2887..3615)
                     /locus_tag="VEQ16_10465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007003785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYP64305.1"
                     /translation="MDVLLVESLSKRYAHTLAVDDISFTLAQGRILGLLGGNGAGKTT
                     TISMILGLLTPTTGRIEVLGHDMARDRFPALQRMNFSSPYIALPARLTVRENLEVYGH
                     LYSVKRLKSRIGELAEQFHLTALLNRPAGDLSSGQKTRVALAKSFINKPELLLLDEPT
                     ASLDPDMGDYVRTMLEEYQRETGAAILLASHNMAEVERLCDEVLMMKTGRIVDRGAPD
                     ALIARYGREDMEQVFLDIARSEAI"
     gene            3704..>4713
                     /gene="hemW"
                     /locus_tag="VEQ16_10470"
     CDS             3704..>4713
                     /gene="hemW"
                     /locus_tag="VEQ16_10470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HYP64306.1"
                     /translation="MDKLALYIHWPFCLAKCPYCDFNSHVRERIPQAEMLAALRAELA
                     WEAARLGRRRLSSIFFGGGTPSLMDPDSVTALIEDASRFFPPAPDVEITLEANPTSIE
                     AKKFAAYRQAGVNRVSIGVQSFNPAALKFLGRQHSADQARDAIQLAKSIFPRLSFDLI
                     YALPGQEEGSWREELNFALSLAADHLSLYQLTIEEGTKFATLYGRGDFALPDEELAAR
                     LYEATAEEAAKFGMAAYEISNYARPGAESRHNLAYWRYQDYAGIGPGAHGRVSLAGGL
                     TATCRHRAPEAWMELVEKQGHGTSETQRIEPPDQAREALLMGLRLAEGVELARFTART
                     GLG"
BASE COUNT          949 a         1459 c         1463 g          842 t
ORIGIN      
        1 ttcaacgcgc ggggcagggc tatctggtga ttgcgggatc gatcaacggc gcccatcaca
       61 aaggggaggg gttaggaatc gattatgcct gggcagctca cgaactgaat gaggtccaat
      121 tcttcgccat ccggctccct agcttggtaa gcagccaatg acgagaaaac ttctaacatg
      181 tgctgcttcg ttccttttta ttcttgtatg gggacaatct cttccgggcc agtctgcacc
      241 cctctgcgac cttcgcccag cctccagctg gtacaccacc atcacggcag gagattatag
      301 actgctgttc gatgatgacg ctgaccttgg cgcctcgccg caaatcgaac atgcgcagca
      361 cggaaattca ttcgtcaccg acactaattc cttccgcatc gccggaccaa acggcacatg
      421 ctgggcttct cccgaggtcg gtatcgtaac catgccggta ttcatcgcca acgggcgcac
      481 cctctatatc cccacctatt cggggagtaa cgcctatctc tttgccgtcg atgcgccaag
      541 ctgcaaaacg ctctggcaaa gccccggcct tgatggcggc ttgcccacac gcaagcccta
      601 tggttttttc ctgcccggcg tgggacgggt gtttatcggg gctgattgcc tgccccgcat
      661 cacaccctaa acagtccctt actgcgcctg ctgcgccgcc tgcgccggcg ccggctggct
      721 ggcgctatag cgccccagca gcgtgcgcaa cgggttggcg ccgggattct ggccctgccc
      781 atccaccacg atctgccgcg cattgagatc ctgcccataa tattgctgct gcgcattgcc
      841 gtcattggac aggatggagc ccgcgaaggt caggccgcca tacaggccct ggctcttgga
      901 gacgctgatg atatccgcat tcaacgccgt ggacatcgag ccgttcacgc ccgcgccaaa
      961 ggttgccacc gtgagcccgg catcgccgcc gatcttgaat tgcgagttca tcagcgcgtt
     1021 caacccgcca tcggtcatga tcagcatcat cacctcggca ttctggatgc cgatttgcag
     1081 gccgaaactg ccactgccga ggctatagag cgcgggatag gaccagctgc cgtcggcgga
     1141 gcggccggac atcacgcagg ccccgccctc cccgccaaaa atgaagccgc cgcgaaagat
     1201 gttggggcag atcaccacgg ctttcgcgtg gcgcaggaga tactgcacct ggctgccgcc
     1261 cgtgccgtcc accagatcct ccagcgccag cgtggaacta tcgaccagat gttgcggcgt
     1321 atccgccagg gcggaggaga caggtgccat agccagggca gccgcaagca gaagacgctt
     1381 cataacaaaa ctccttagat acattcaggc cgcatttacc gacctagctg gccgcgcctc
     1441 ggccttttca caagcctgcg tggatggatg ttcattgact gacaagacac gccagccccg
     1501 cttattccgt tcaatctggg tcaacgagat attatcgatc tgcaggcata aagcctggtg
     1561 cggagtcagg tccagcgcaa aagcgcaggc ggcgcgtata gccccgccat ggctaacgat
     1621 gatggtgttt tcgccggaca cgctctccag cagcgcctcc ataccctggc cgacgcgggt
     1681 gatgagatgc gaaaaactct cgccgccggg cggggtttcc gcggcatgga tgggccagaa
     1741 tggatgccgc tcatccgcgt gccttgtgtc gaaactcgcc atgggcaggc cttgcagcgc
     1801 gccgaaatcc tgctcgatga aagcggggtc gatcagcggc gtctgttcag gatacccggc
     1861 gcggaacagg gctccggccg tcacctgcgt gcgcgaaagc ggggtgcaga taaagcgcgc
     1921 cgggcgcggc agccttgccg ccagggccgc gtagcgcgcg ccttgcgcct gcattgtttc
     1981 atcgcagatg ggcacatcct cggtgccgta aagcgtggcc aaagctgccg gatgcaccaa
     2041 ggcgtggcgg acgaaccaga atttatgcat gctcactccc cgatgctgat cagcgcgcca
     2101 cggacgcgcg cgcggcggaa ttcaccagcg aaaacggcaa tggatgcgag catccaggcg
     2161 atgttgagcg cgatggcgaa gccaagctgc ccccaatgcg gcgcctgccc ggcgatggcg
     2221 gcgcgcatcc cttcgaaaat gtaagaggcc ggcaggattt gcgcgaaagg ctgcagccag
     2281 attggcaggg aagcgacggg ataatagacg caggccagcg gcgtgatgcc gaaagcgagc
     2341 gtccaggcca gagcctccgc ccccgcgccg tagcggaaca ggagcgaaac aatgccgagc
     2401 gccatccacc agcccatgac gagcaggttg gcgaagaaga ccagcatgat gaggccgggc
     2461 gcgaaaatat catagtaata gagcaggtag gcgatgattg tggcaggaaa caggccaaat
     2521 acagtgcgga ggacggaaac aatcagcaaa gcgccaatca attccgccgg gcgcagtgga
     2581 ctgacgaaaa gatgcccgag attgcgcgac cagatttcct ccagaaatcc gactgttacc
     2641 cccatctggc tgcgcaaagt gatctcccac agcagcaccc cgccgatgag cgcgccagcg
     2701 gccaaagcgc gtggcccggc atgggcatgg acgatataag aggaggtaaa gccccagatg
     2761 agcatggtga gcgtcggcca atagacgatt tcagccaaac gcggccagga gcgccggtac
     2821 atgcaggcat ggcggtagat aagcccccag atgcggcgcg cgctcatatc gcttcgcact
     2881 ctgcgctcat atcgcttcgc tccgggcaat atcgagaaat acctgctcca tatcctcccg
     2941 cccatagcgg gcgatgagcg cgtccggcgc gccacggtcg acgatgcggc ccgtcttcat
     3001 catcagcacc tcgtcgcaaa gccgctccac ctcggccatg ttgtgtgagg cgagcaagat
     3061 ggcagcaccc gtctcgcgct gatattcctc cagcatggtg cggacataat cgcccatatc
     3121 cgggtccagg ctggcggtgg gctcgtcgag caggagaagc tcgggcttgt tgatgaagga
     3181 tttagccagc gcgacgcggg ttttctgccc ggacgacaaa tcccccgcgg ggcgattgag
     3241 caaagcggtc aggtggaact gctcggccag ctcgccaatg cgcgatttca gccgcttcac
     3301 gctgtagaga tggccgtaaa cctcgagatt ttcccgcacg gtgaggcggg cgggcaaagc
     3361 gatatagggg gaggaaaaat tcatcctctg cagtgccgga aaccggtccc gcgccatgtc
     3421 gtgccccagc acctcgatgc gccccgtagt gggggtgagc aggccgagaa tcatggaaat
     3481 ggtcgtggtc ttgccggcgc cattgccgcc gagcaggccg aggattctgc cctgtgccag
     3541 cgtgaaggaa atatcatcca ccgccagcgt gtgggcgtag cgtttcgaaa gtgattcgac
     3601 cagaagcacg tccatacggc cgggataggc ggtaatgcgg cttcgcacca gggttgcggc
     3661 ctggaaattg ggcaattccg gccgggtgcg ctatgtgcgg ccggtggaca agctcgccct
     3721 ttacatccat tggcccttct gcctcgccaa atgcccctat tgcgacttca actcgcatgt
     3781 gcgggagcgg attccgcagg ccgaaatgct cgcggcgctg cgggcggagc tggcctggga
     3841 ggcggcgagg ctcgggaggc ggcggctcag ctccatcttc ttcggcggcg gcacgccgag
     3901 cctgatggac cctgacagcg tgacggcgct catcgaagat gcctcacgtt tcttccctcc
     3961 ggccccggac gtggaaataa ccctggaggc caacccgacc agcatcgagg cgaaaaaatt
     4021 cgccgcctac cgccaggccg gggtcaaccg cgtctccatc ggcgtgcaga gttttaatcc
     4081 ggccgccctg aaatttctcg gccggcagca ttcggcggat caggccaggg atgccatcca
     4141 attagcaaaa tctatctttc cgcggctttc gttcgatttg atttatgcat tgccggggca
     4201 ggaggagggc tcttggcgag aggagctgaa tttcgccctg tcactggcgg cggaccatct
     4261 ctcgctctac cagctcacca tcgaggaggg gacgaaattc gcgaccctct atgggcgcgg
     4321 ggattttgcg ctgccggatg aggagctggc ggcgcggctt tacgaggcga cggccgagga
     4381 ggcagcgaaa ttcgggatgg cggcctatga aatctccaat tatgcgcgtc cgggcgcgga
     4441 atcccggcat aatctggcct attggcgcta ccaggattac gccggcatcg gccctggggc
     4501 acatgggcgg gtaagcttgg ccggggggct gaccgccacc tgccgccacc gcgcgcccga
     4561 ggcctggatg gaactggtgg aaaaacaggg ccatggcact tccgaaaccc agcggatcga
     4621 gccgcccgac caggcgcgtg aggcgctctt gatggggttg cgtctggcag agggggtcga
     4681 gctggcccgt ttcaccgccc gcaccgggct ggg
//
LOCUS       DASQCV010000668         1811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2629086, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000668 DASQCV010000000
VERSION     DASQCV010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2629086"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1105
                     /gene="purB"
                     /locus_tag="VEQ16_10475"
     CDS             <1..1105
                     /gene="purB"
                     /locus_tag="VEQ16_10475"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012812894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HYP64307.1"
                     /translation="DVIAFLTWLAKRVGEESRFVHQGLTSSDVLDTCLAVQLVKATDL
                     LLADLDLVLAALKKRAEEHKYTLTIGRSHGIHAEPTSFGLKLAGHYAEFARNKQRLIA
                     ARAEIATCAISGAVGTFAHVDPRVEEYVAAKLGLAVEPVSTQVIPRDRHAAFFAALGV
                     IASGVERLATEVRHLQRSEVREAEEFFHAGQKGSSAMPHKRNPVLSENLCGLARLVRA
                     AVIPAMENVALWHERDISHSSVERGIAPDATVTLDFALVRLAGMIDKLTIYPEQMAAN
                     VESLGGVVHSGEVLLALTKAGISREDAYKIVQRNAMETWTRLGQAGAKNFRENLLADA
                     EVAGRVSEAAIDAAMSAERHHAHVDTIFKRVFG"
     gene            1207..>1811
                     /locus_tag="VEQ16_10480"
     CDS             1207..>1811
                     /locus_tag="VEQ16_10480"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HYP64308.1"
                     /translation="MLILPDLQTEIVSRCLAGNFGDEPSQGAHSLGTITLPDGARKPI
                     WLCHAADAVLLDDCGQTVLITRLHNPGRGKQALPGGLLDEVEGQVESSRAAALREAME
                     ETGIGADVLARAEITQLGHRRYARPFDIRCAWKGLIGLPVLKGDFFTVSTLGFRIKIA
                     GDLRDVALLAGDDATAVHVVSVTGLTSEQFAVPDHIEMIHEA"
BASE COUNT          309 a          546 c          629 g          327 t
ORIGIN      
        1 tgatgtgatc gcgtttctga cgtggctcgc caagcgcgtc ggcgaggaaa gccgcttcgt
       61 gcatcagggc ctcacctcgt ccgacgtgct ggatacctgc ctcgccgtgc agctggtgaa
      121 ggccacggac ctgctgctgg cggacctgga cctcgtgctg gcggcgctga agaagcgcgc
      181 ggaggagcat aaatacacgc tcaccattgg ccgcagccac ggcatccatg ccgagccgac
      241 cagcttcggc ctcaagctcg ccggccatta tgccgagttc gcccgcaaca aacagcgcct
      301 catcgcggcg cgggcggaga ttgccacctg cgccatctcc ggcgcggtgg gcactttcgc
      361 ccatgtggac ccgcgggtgg aggagtatgt ggccgcaaaa ctcggcctcg ccgtggagcc
      421 ggtctcgacc caggtgatcc cgcgcgaccg ccatgccgcc ttcttcgcgg cgctgggggt
      481 gattgcgagc ggcgtcgagc ggctggcgac ggaagtgcgg catctgcagc gctcggaagt
      541 gcgcgaggcg gaggaattct tccatgccgg gcagaagggc agctcggcca tgccgcataa
      601 gcgcaatccg gtgttgtcgg agaatttgtg cggcctcgcc cgcctggtgc gcgccgccgt
      661 cattccggcc atggagaatg tggctttgtg gcatgagcgc gacatctcgc actcttccgt
      721 cgagcgcggc atcgccccgg atgcgacggt aacgctggat ttcgccctgg tgcgcctggc
      781 ggggatgatc gacaagctga ccatctatcc ggaacagatg gcggcgaatg tggaatcgct
      841 cggcggggtg gtgcattcgg gcgaggtgct gctggcgctc accaaggccg ggatttcgcg
      901 cgaagacgcc tataaaatcg tgcagcgcaa tgccatggag acctggacga gactgggtca
      961 ggcgggggcg aaaaatttcc gcgaaaacct gctggcggac gcggaggtgg cggggcgcgt
     1021 ttcggaggcg gccatcgacg cggcgatgag cgccgagagg caccatgccc atgtggatac
     1081 catcttcaag cgcgtgtttg gctgagagac tgtttgacac gaagttgatc cggcctcgcg
     1141 ccgggtgaac tttgcttctc ggaagaatca ccctaacgtc acgcaatgga cattttgcgt
     1201 gatcacatgc tgattctgcc tgacctgcag acggagatcg tatcgcgctg cctggctggg
     1261 aatttcggtg acgagccaag ccagggcgcc cattcgctcg gaaccattac gttgccggat
     1321 ggggcgcgga aacccatctg gctgtgccat gccgccgatg cggtgctgct ggatgattgc
     1381 ggccagaccg tgctcatcac gcggctgcat aatcccgggc ggggcaagca ggcgctaccg
     1441 ggcggactgc tggacgaggt tgagggccaa gtggaatcct cccgcgccgc cgccctgcgc
     1501 gaggcgatgg aagagaccgg tatcggcgcc gatgtgctgg cgcgggcgga gatcacccag
     1561 ctcggccacc gccgctatgc gcggcccttc gacatacgct gcgcctggaa ggggctgatt
     1621 ggcctgccgg tgctgaaagg tgatttcttc accgtctcca ctctgggttt ccgcatcaag
     1681 atcgcggggg atttgcgcga cgtggcgctg ctggcgggcg acgatgccac ggcggtgcat
     1741 gtggtgtcag ttaccgggct gacgtcagag caattcgccg tgccggacca tatcgagatg
     1801 atccacgagg c
//
LOCUS       DASQCV010000669         1503 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_639719, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000669 DASQCV010000000
VERSION     DASQCV010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1503
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_639719"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            14..>1503
                     /locus_tag="VEQ16_10485"
     CDS             14..>1503
                     /locus_tag="VEQ16_10485"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HYP64309.1"
                     /translation="MTDERWQLAYAIYEAAAPLAEPERSQYVQAAAPDAEIAGKVLAM
                     LDEMEATADSAAFRESGRSEHPGASVPFMALSPGAKIGSYQVLECLGCGGMGEVYLAY
                     DPRLDRRVAIKLLPPHLAADAVARERLRREALAAAALDHPFICKIFEIGEDQGTLFMV
                     MEYISGETLYARLRAGLLPRSEALRIAAEVAEALEAAHAKPVVHRDLKPANVMLTSQG
                     RAKVMDFGLAKRLASGELKDISATAGDLPLTAAGEVAGTPEYMSPEQMTGAPLDHRSD
                     LFSFGIILCELLTGKHPFQRNSKVETMTAILRDSPDLAVTGNAGLSPGQIVLIRRLLA
                     KSPDERYQSIREVRDDLARLGSSSTAAAEPEEAVKPPIPLIGRDPERAELVRHLESAL
                     AGHGSLVLIGGEPGIGKTHLTRAILAEAARRGCFTAVGHCHEMEGAPPYVPFIEMLEH
                     AARVVPRETFRYALGSAAPEAAKLMPELRHMFPDIPPPLELPPEQQR"
BASE COUNT          270 a          466 c          491 g          276 t
ORIGIN      
        1 ggaggccggg gccgtgacgg acgaacgctg gcaactggca tacgcgatct acgaagcggc
       61 cgcccctctc gccgaaccgg agcggtcgca gtatgtccag gctgccgccc cggacgcgga
      121 aatcgccggc aaagtgctgg ccatgctgga cgaaatggag gctaccgccg attcggcggc
      181 ttttcgcgaa tccgggcgtt ctgagcatcc tggcgcctca gttccattta tggctctgag
      241 ccctggggcc aagatcggtt cttaccaggt cctcgagtgt ctcggctgcg gcggaatggg
      301 cgaggtctac ctggcttacg atccgcgtct ggatcggcgt gtcgctatca agcttctacc
      361 cccacatctc gccgccgatg ccgtggcccg cgagcgcctt cgccgcgaag ccctggcggc
      421 agcagcactt gaccatccgt ttatctgcaa gatcttcgaa attggtgagg accaagggac
      481 gctgtttatg gtcatggagt atatcagcgg cgagacgctg tacgctcgcc tgcgcgccgg
      541 gctgctgccg cggtctgagg ccctgcgaat cgccgccgag gtggcagagg cactggaggc
      601 ggcgcatgca aaacccgttg tgcatcgcga cttgaaaccg gccaacgtga tgctgacatc
      661 gcagggccgg gccaaagtga tggatttcgg actggccaag aggcttgcat caggcgaact
      721 caaggacatc agtgccacgg ctggtgacct gcctttgacg gccgcgggtg aggtggctgg
      781 tacgcctgag tacatgtcgc cggagcagat gacgggcgcg ccgctcgacc atcgctcaga
      841 tctgttctct ttcggcatca ttctctgtga actgctgacc ggcaagcatc cttttcaacg
      901 caactcgaag gtcgaaacga tgacagcgat tctgcgcgac tcacccgatt tggcggttac
      961 gggcaacgca ggattgtcgc caggacagat agtactgatc cgccggctgc tcgccaagtc
     1021 gccggacgag cgctatcagt cgatacgtga agttcgtgac gatctggcca ggctggggag
     1081 ttcatctacc gcagcggccg aaccggagga agcagtcaag ccgccaatcc ccttgattgg
     1141 ccgtgacccg gagcgggcag aactcgtgcg gcatcttgag agcgcgctcg ccggtcacgg
     1201 ttcgctggtg ctgatcggcg gagagcctgg tatcggtaag acgcacctta cgcgggcgat
     1261 cctcgctgag gccgcccggc ggggatgctt taccgcggtg ggacactgcc atgagatgga
     1321 aggcgccccg ccctatgtgc ccttcatcga gatgctcgaa cacgccgcgc gggtggtgcc
     1381 gcgggaaact ttccgctacg ccctcggtag cgcggcgccg gaagcggcca agctgatgcc
     1441 ggagctgcgg cacatgtttc ccgacatccc gccgccgctt gaactgccgc ccgaacagca
     1501 gcg
//
LOCUS       DASQCV010000670         2628 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1304277, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000670 DASQCV010000000
VERSION     DASQCV010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2628
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1304277"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..811
                     /locus_tag="VEQ16_10490"
     CDS             <1..811
                     /locus_tag="VEQ16_10490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010516316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP64310.1"
                     /translation="GATVFGAARDLAKARDAMTRVGEDRVQLVELDLASLASVRACAD
                     AMSKQGPLDLVIANAGLMGPPMSRTADGFETQFGTNHLGHFVLVNRLAPHINEGGRVV
                     VLASSAHHISDVDLDDPNFDHTQYTPYGGYGRSKTANVLFAVEFDRRHRERGIRAVAV
                     HPGGVATELGRYMDDETREAQRKALAGGPQNWSFVRKNAAQGASTSVWAGVYAPAHEV
                     GGRYCEDCHVSETLSGPAPNPMGPGVAAYALDLERAKALWAKSEEMVGEKF"
     gene            complement(973..1854)
                     /gene="mmsB"
                     /locus_tag="VEQ16_10495"
     CDS             complement(973..1854)
                     /gene="mmsB"
                     /locus_tag="VEQ16_10495"
                     /EC_number="1.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020593913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008442 - 3-hydroxyisobutyrate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006574 - valine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyisobutyrate dehydrogenase"
                     /protein_id="HYP64311.1"
                     /translation="MGEVIGFIGLGNMGLPMAGNLVKAGHKVQGFDVVPAANEAAAKA
                     GIAVVASAVEAVKDAAIVVTMLPNGKLVLDLFNSGILQAAGVGTLFIDSSTIDIDSAR
                     AANALAIAAGMRNLDAPVSGGVGGAAAGTLTFMVGGEENDFARARPVLELMGKKIVHC
                     GASGAGQAAKICNNMILGISMIAVGEAFVLAEKVGLSHQALYDVASTASGQCWSLTSY
                     CPVPGPVPTSPANNSYKPGFAAALMLKDLLLSQEAAASAGADTALGKHATEIYKKFVE
                     AGQGGVDFSGIINAIRE"
     gene            complement(1869..>2628)
                     /locus_tag="VEQ16_10500"
     CDS             complement(1869..>2628)
                     /locus_tag="VEQ16_10500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014415292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYP64312.1"
                     /translation="AGSDAAALRTRAVRDGDEYIVNGAKQFISGAGTAELYAVMVRTG
                     GEGPKGISTLLIEKDMKGVSFGANEYKMGWNAQPTRQVIFEDVRVPVANRLGDEGIGF
                     KIAMTGLDGGRINIAAASLGGAQTALDKAIAYLSERKAFGQPLGQFQALQFRIADMAT
                     ELEAARLLLWRAACALDAKAPEATKLCAMAKRFVTDVGFDVANQALQLLGGYGYLADY
                     GIEKIVRDLRVHQILEGTNEIMRVIIARGLLAPQ"
BASE COUNT          501 a          845 c          784 g          498 t
ORIGIN      
        1 cggggccacc gtgttcggcg cggcgcgcga tctcgccaag gcgcgggacg ccatgacgcg
       61 cgtgggcgag gatcgcgtgc aactggttga actggacctc gcctcgctcg cctccgtgcg
      121 cgcctgtgcc gatgctatgt ctaagcaagg tccgcttgac ctcgtcatcg ccaatgcggg
      181 cctgatgggc ccgccgatga gccgcacggc ggatgggttc gagacgcagt tcggtaccaa
      241 ccatctcggg catttcgtgc tcgtcaaccg gctggcgccg catatcaatg agggtgggcg
      301 cgtcgtggtg ctggcttctt ccgcgcacca tatttccgat gtcgatctcg acgacccgaa
      361 tttcgatcac acgcaatata cgccttatgg cggctatggc cgttccaaga ccgcgaacgt
      421 tctgtttgcg gtggaattcg accgccgcca tcgcgagcgc ggcattcgcg ccgtcgccgt
      481 gcatcctggt ggcgtggcaa ccgagctggg ccgctatatg gatgacgaaa cgcgcgaggc
      541 gcagcgcaaa gctttagcgg gcggaccgca gaattggagt tttgtgcgca agaacgcggc
      601 gcagggcgcc tccaccagcg tgtgggcggg cgtgtatgcg ccggctcacg aggtaggcgg
      661 gcgctattgt gaggattgcc atgtgagcga aacattgtcc ggcccagcac cgaacccgat
      721 ggggccgggg gtggcggctt atgcgctgga tctggagcgg gctaaggcgt tatgggcgaa
      781 gagtgaggag atggtgggag aaaagtttta agaaagaatg cgcctttttg aaaaaagata
      841 gtcactgctt cgcgctctcg aaccggtggc gcgcgctacg cagcccaaaa acttttataa
      901 cttaggcttg aggctgtgac tccatgggga gccacacacc caggtaatgg ggtccggggc
      961 agagccctgg ccttactccc taatcgcgtt aataatcccc gaaaaatcca cgcccccctg
     1021 cccggcctcc acaaatttct tgtagatttc cgtcgcatgt ttcccaagcg ccgtatcagc
     1081 gccggcggac gcggcagctt cctggctcag gagcaaatcc ttcagcatca gcgccgctgc
     1141 aaagcccggt ttatagctgt tattggcagg gctcgtaggc accggccccg gcacggggca
     1201 atagctggtg agcgaccagc attggcccga ggctgtcgaa gcgacatcgt acagagcctg
     1261 atgagagagc ccaacttttt ccgccagcac aaaggcctcg cccacggcga tcatggaaat
     1321 accgaggatc atattgttgc agattttcgc ggcctgcccg gcaccggagg caccacaatg
     1381 cacgattttt ttccccatca attccagcac cggcctggcg cgggcgaagt cattctcctc
     1441 cccccccacc atgaaggtca gcgtaccggc cgccgcccca ccgacgccac cagacacagg
     1501 cgcgtcgagg tttctcatgc cagcagcaat ggcgagcgca ttggcggcgc gagcgctgtc
     1561 aatgtcgatg gtggagctgt cgatgaacaa cgtaccgaca ccagccgcct gcagaatacc
     1621 gctattaaac aaatccagca ccagcttgcc gttgggcagc atggtgacga cgatggcggc
     1681 gtctttcacc gcctccacgg cgctggcaac caccgcaatg cccgccttcg cagccgcctc
     1741 gttggccgcc ggcaccacgt cgaaaccctg gaccttgtgc ccggccttca ccagattgcc
     1801 ggccatcggc agccccatat tgccgaggcc gataaaccca atcacttcac ccatgtttcc
     1861 acgctccctt attgcggcgc cagcaggccg cgcgcgatga tgacacgcat gatctcgttc
     1921 gtgccttcaa gaatttgatg cacgcgcaga tcgcgcacga ttttctcgat tccgtaatca
     1981 gccagatagc catagccgcc gagcagctgc agcgcctggt tggccacgtc aaatccaacg
     2041 tccgtaacaa aacgcttggc catggcgcaa agtttggtcg cttccggcgc cttggcgtcc
     2101 agcgcgcagg ccgcgcgcca aagcagcagg cgggcagctt ccagttccgt cgccatgtcc
     2161 gcgatgcgga attgcagcgc ctggaactgg ccgaggggct ggccgaaagc cttgcgctcg
     2221 ctgagatatg caatggcctt gtccagcgcc gtctgcgccc cgccgagcga ggcggcggca
     2281 atgttgatgc gcccgccatc aagcccggtc atggcgatct tgaagccgat tccctcatcg
     2341 ccaagccggt tcgccaccgg cacgcgtaca tcttcgaaaa tcacctggcg cgtcggctgc
     2401 gcgttccagc ccatcttgta ctcgttggcg ccgaaggaga cgcctttcat gtccttctcg
     2461 atgagcaacg tggaaatgcc tttcggtcct tccccgcccg tgcgcaccat cacggcatag
     2521 agctcagccg tgccggcgcc agagatgaat tgtttggcgc cgttgacaat atattcatcg
     2581 ccatcgcgca cggcgcgcgt acgcaaagcc gccgcgtcgg agcctgcc
//
LOCUS       DASQCV010000671         1852 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_475308, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000671 DASQCV010000000
VERSION     DASQCV010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475308"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..309
                     /locus_tag="VEQ16_10505"
     CDS             <1..309
                     /locus_tag="VEQ16_10505"
                     /inference="COORDINATES: protein motif:HMM:NF012457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HYP64313.1"
                     /translation="IFISENGFATVKDGKPGSGLEDDGRLAYLAANLQFLQKSIESGA
                     NVSGYFIWSLIDNFEWDAGMKYRFGLVDVDFKTLKRTPKQSYYWYSALVKGQAGLQTA
                     "
     gene            complement(346..1143)
                     /locus_tag="VEQ16_10510"
     CDS             complement(346..1143)
                     /locus_tag="VEQ16_10510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007398183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HYP64314.1"
                     /translation="MNLIEHLAIVPAYVVSGLLVGILVGMTGVGGGSLMTPLLVLMFG
                     FHPTTAVGTDLLFAAATKTVGTTIHSAGKTVDWQIVRRLATGSVPATILCLLLIAYFG
                     VTSKTVTSMISLTLGVALLLSAVMLLFKDLIVAGINRRFPDVGLHSPPFVTVLVGFIL
                     GILVSLSSVGAGALGTVALIILYPRLPIVRIVGSDIAHAVPLTLLAGLGHWYLGTINF
                     HLLESLLIGSIPGIIAGSYLARYSHDRVLKMCLGAILAVVGTRLLMK"
     gene            complement(1213..>1852)
                     /locus_tag="VEQ16_10515"
     CDS             complement(1213..>1852)
                     /locus_tag="VEQ16_10515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HYP64315.1"
                     /translation="FLKKRHGVDNVALSLIARPRPKQPLPKALSPEDAKEVAFDIGEA
                     SDSPAIQARDAALMTLLYGAGLRINEALSLNVGDMPAADDALRVTGKGNKQRIVPLLP
                     VVREAIAAWLRLHPNPGRGEPLFVGARGGRLNAGVAQKALRDFRRLANLPEHATPHAL
                     RHSFATHLLAGGADLRSIQELLGHASLSTTQRYTEVETSQLMEVWRRAHPRA"
BASE COUNT          371 a          543 c          641 g          297 t
ORIGIN      
        1 atcttcatct ccgaaaacgg ctttgccacc gtcaaggacg gcaaacccgg cagcggcctg
       61 gaagatgacg gccgcctcgc ctacctcgcc gccaatttgc aattcctgca gaaatccatc
      121 gagtccggcg ccaacgtctc cggctatttc atctggtctc tcatcgataa tttcgaatgg
      181 gacgccggca tgaaataccg cttcggcctc gtcgatgtgg atttcaaaac cctcaagcgc
      241 acgcccaaac aatcctatta ctggtacagc gccctggtga agggccaggc ggggctgcag
      301 acggcgtaag gctggggtca gaggcggagc ccctggctga gggcatcact tcatcagcaa
      361 cctcgtgccg acgacggcca ggatggcgcc aaggcacatt ttcaggacgc ggtcgtggga
      421 atagcgggcg aggtagctgc cggcgatgat gccgggaatg gagccgatga gtagcgactc
      481 gagcaggtgg aaattgatgg tgccgagata ccagtggccg agccctgcga gcagggtgag
      541 cggcacggcg tgggcgatgt cggagccgac gatgcgcacg atgggcaggc gcggataaag
      601 gatgatgagc gcgacggtgc caagcgcgcc agcgccgacg gaggagagcg agaccaggat
      661 tccgaggatg aagccgacca ggaccgtcac gaagggcgga ctgtgcagcc ccacatcggg
      721 aaaacggcga ttgatgcccg cgacgatcag gtccttgaac agcagcatga cggcgctgag
      781 gagcaacgcc acgcccaatg tcagcgagat catgcttgtc acggttttgc tggtcacgcc
      841 gaaatacgcg attagcagca ggcagaggat ggtggcgggc acggagccgg tggcgaggcg
      901 gcggacgatc tgccagtcga cggtcttccc ggcgctatgg atggtggtgc caacggtctt
      961 ggtggcggcg gcgaagagca ggtctgtacc caccgcagtg gtggggtgaa agccgaacat
     1021 caggaccagc aacggcgtca tcagcgagcc gccgccaacg cctgtcatgc caaccaggat
     1081 gccgaccagc aggccggaga cgacataagc gggcacaatg gcaagatgct ctatcagatt
     1141 cataggctcg gattacatgc ccccttctgg cggagcaatg gggggttacg cgcgcggatg
     1201 cgcactttaa gttcaagcgc gcggatgcgc gcgacgccat acctccatca attgtgaagt
     1261 ttccacttcg gtatagcgct gcgtggtgga gaggctggca tggccgagca attcctggat
     1321 ggaccggaga tccgcgccgc cggccagcag gtgggtggcg aaggaatggc gcaaagcgtg
     1381 cggcgtggcg tgctcgggca gattggcgag gcggcggaaa tcacgcagag ccttctgcgc
     1441 caccccggca ttaagccgcc cgccgcgcgc cccgacgaac aaaggctcgc cccggccggg
     1501 attggggtgc aggcgcagcc aggcggcgat ggcttcccgc accaccggca gcagcggcac
     1561 gatgcgctgt ttattgcctt tgcctgtcac gcgcagcgcg tcgtccgcgg ccggcatgtc
     1621 gccgacattc aggctcagcg cctcgttgat gcgcagcccg gcgccgtaga gcagcgtcat
     1681 cagcgcagcg tcgcgtgcct ggatggcggg cgagtcgctc gcctcgccga tatcgaaggc
     1741 gacttccttg gcgtcctcgg gcgagagagc cttcggcaga ggctgtttcg ggcgcgggcg
     1801 ggcgataagg gagagggcga cattgtccac gccgtgccgt ttcttgagaa ag
//
LOCUS       DASQCV010000672         3325 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_804203, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000672 DASQCV010000000
VERSION     DASQCV010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3325
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_804203"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(196..>3325)
                     /locus_tag="VEQ16_10520"
     CDS             complement(196..>3325)
                     /locus_tag="VEQ16_10520"
                     /inference="COORDINATES: protein motif:HMM:TIGR00915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HYP64316.1"
                     /translation="VLFVVLGLVSIGALPVAEYPQIVPPTIMVTTTDPGADAKTLVNT
                     VALPIEQQVNGVQGMLYMQSTNTSAGNYTLIVTFKVGTDLNFAQVLVQNRVSAALAQL
                     PKSVQAQGVVVQQKSTAILQFITLTSPKRTYDGLFLNNYAIINMQNELARLPGVGNVT
                     VFGTGEYAMRIWLDPRKMQQLAIMPSDVLNALREQNIAVPAGQVGGPPVSTPQAFQLT
                     VNVPSQLSDPSQFADIIVKSRGAASGTQGPTAASIVRIRDIGRVELGAVNYNTLSKFS
                     GAPSAAIAIYLTPDANALAVAASVRKTVARMAKTFPPDIAYAIPFDTTVFVSASIHEV
                     YKTLYEAGILVLIVILIFLQSFRATLVPATTIPVTIIGAFAAMAALGFSINLLTLFGL
                     VLAIGIVVDDAIVVVEGVTHKMETQGVDAKRGAIAAMKELTSPIVGITLVLMSVFIPA
                     GFMPGITGQMYAQFALVIAATALISAISALTLSPTQCALLLRPAKPGAKKNIVFRTFD
                     RFYYPLEAWYVRLIERMVSRAGFYTLCGLGLIVIAVYGLGRIPSAFIPLEDQGYMIMS
                     VQLPDSASIGRTNEVLASLSERVLKLPSVSSDLTISGSSLMDNSASLANAGIIYVMLK
                     PWAERGSKEGLLPVYKELNELAATEPEAKVVAVPPPPIQGLGQSGGFQGVLELRDGSF
                     DYTKLQYIADQLVRAGNAQSGLAGLFTTYRALAPQLIANIDRTKARGLDVEIGNVHDA
                     LQTFLGSSYVNLFTKYGQVFPVYVQAEPNARMTIDEVRNFTVRNNAGQMVPLGTLTDL
                     TPTFGPPIITLYNTYPAAMINGRAAAGYSSGQALDIVDDMAAHILPPGFGFEWTSTAF
                     QERLAAGATTIIFGLSLLLVYLVLAGQYESWITPITVLLAVPLALLGTVAVLTALGLA
                     NNIYTQIGLVLLIALAAKNAILVVEVAREERQLHGKSIIDAAVTAARIRFRPILMTSF
                     AFILGVMPLVFASGAGANSRKSIGIAVASGMLASTCIAVVFVPSFYVVLQRFNERYVT
                     KKKETSVELPAE"
BASE COUNT          662 a          983 c         1086 g          594 t
ORIGIN      
        1 ccagtgtggc gtgcaggggg ctgcggtcgg cggcgctgcg gggcagcacc gtggcttctg
       61 tattctggtc caagactggg tccatccgtg gcgtttatga ttggcggttt ttgacgcgcg
      121 ctttgctcat acgcggttgc ggggcgcgcg gctaggcgac ccccggttga cccagcctcg
      181 cgccgtgccc tggcgctact ccgccggcaa ttccaccgaa gtctccttct tcttcgtcac
      241 ataacgctca ttgaagcgct gcagcacgac atagaaggac ggcacgaaca ccaccgcgat
      301 gcaggtggac gccagcatgc cgctcgccac ggcgatgccg atggatttac gcgaattcgc
      361 ccccgccccg gaggcaaaaa ccagtggcat cacaccgagg ataaaagcga aggatgtcat
      421 cagaatcggc cggaagcgga tccgcgccgc ggtcaccgcg gcgtcgatga tcgacttgcc
      481 gtggagctgc cgctcctcgc gtgccacctc caccacgaga atcgcgttct tcgccgccag
      541 ggcgatgagc agcaccaggc cgatctgcgt atagatattg ttcgccagcc ccagggcagt
      601 gagcaccgcc accgtgccga gcagcgccag cggcacggcg agcagcacgg taatgggcgt
      661 gatccagctc tcatactggc cggccagcac gagatagacc agcagcagcg agaggccgaa
      721 gattatggtg gtggcaccgg cggccagccg ctcctgaaag gcggtactcg tccattcaaa
      781 gccgaaaccc ggcggcaata tatgtgccgc catgtcatcc acaatatcca atgcctggcc
      841 ggagctgtaa ccagcggccg cgcggccgtt gatcatggcg gcgggatagg tgttgtagag
      901 cgtgataatg ggcggaccga aggtgggcgt gaggtccgtc aatgtgccga gcggcaccat
      961 ctggcctgca ttgttgcgca ccgtgaaatt gcgcacctcg tcaatcgtca tgcgcgcatt
     1021 tggttcggcc tgcacataga cagggaaaac ctgaccatat ttggtgaaga gattcacata
     1081 ggacgagccg agaaaagtct gcagcgcatc atgcacattg ccgatctcga catcgaggcc
     1141 acgcgccttg gtgcggtcga tattggcgat aagctgcggc gccagggcgc gataggtggt
     1201 aaacagcccg gcgaggccgc tttgcgcatt gccggccctg acgagctggt cggcgatata
     1261 ttgcagcttc gtataatcga agctgccgtc acgcaattcc agcacgcctt ggaacccgcc
     1321 cgattggccg aggccctgga tcggcggcgg cggcaccgcc accaccttcg cttccggctc
     1381 ggtggccgcg agctcgttca gctccttata gacgggcagc agcccctcct tggacccacg
     1441 ctccgcccag ggcttgagca tcacatagat gatgccggca ttggccaggc tcgcgctgtt
     1501 atccatcagc gaggaaccgc tgatggtgag atcgctcgac acgcttggca atttgaggac
     1561 gcgttcgctg agggaggcga ggacctcatt ggtgcggccg atggaggcgg aatctggcag
     1621 ctgcacgctc atgatcatat agccctggtc ttcgagcgga atgaacgcgc tgggaatgcg
     1681 gccaaggcca taaacggcga tgacgataag gccgagcccg cacaaggtat aaaacccggc
     1741 gcggctgacc atgcgttcga taagccggac ataccaggcc tcgagcgggt aatagaatcg
     1801 gtcaaacgtg cggaagacga tattcttctt cgcccccggc ttggccggcc tgagcagcaa
     1861 ggcgcattgc gtggggctca gcgtgagcgc gctgatggcg ctgatgaggg ccgttgccgc
     1921 aatgaccagc gcgaattgcg catacatctg cccggtaatg cccggcatga agccggcggg
     1981 gatgaagacc gacatgagca cgagtgtgat gccgacgatc gggctggtca gctctttcat
     2041 cgccgcgatg gcgccacgct tggcgtcgac cccctgggtt tccatcttgt gggtcacgcc
     2101 ctcgaccacg acgatggcgt cgtccacgac gatgccgatg gcgagtacga ggccaaacaa
     2161 ggtgagcagg ttgatggaga agcccagcgc cgccatcgcc gcgaacgcgc cgatgatggt
     2221 cacgggaatg gtggtggcgg gcaccaaagt ggcgcggaaa ctctgcagga atatgaggat
     2281 gacgatcagc accaggatgc cagcctcgta cagggtttta taaacctcat ggatcgaggc
     2341 ggagacgaag accgtggtgt cgaacgggat ggcgtaggcg atatccgggg ggaaggtttt
     2401 cgccatgcgc gccaccgtct tgcgcaccga agccgccacg gccagcgcat tggcgtctgg
     2461 tgtcaggtag atggcgatgg ccgcggacgg cgcgccggag aatttggaca gcgtattata
     2521 attcaccgcg cccagctcca cccgcccaat atcgcggatg cgcacgatgc tggccgccgt
     2581 agggccctgc gtgccgctgg cggcaccgcg ggatttgacg atgatgtcag cgaattgcga
     2641 agggtcggag agctggctcg gcacattcac ggtgagctgg aaggcctgcg gtgtggaaac
     2701 gggcgggcca cccacctgcc cggcggggac ggcaatattc tgctcgcgca gcgcgttcag
     2761 cacgtccgag ggcatgatgg cgagctgctg catcttgcgc gggtcaagcc agatgcgcat
     2821 ggcatattcg ccggtgccga acaccgtgac attgcccacg cccggcaggc gcgccaactc
     2881 attctgcata ttgatgatgg cgtagttatt gaggaacagc ccatcatagg tccgcttggg
     2941 cgaggtgagg gtgatgaatt gtagaatggc ggttgatttc tgctgcacca ccacgccctg
     3001 cgcctgcacc gatttcggca gttgggcgag ggcggcagaa acgcgattct gcaccagcac
     3061 ctgggcgaaa ttcaaatccg tgccgacctt gaaggtgacg atgagcgtat aattgcccgc
     3121 gctggtgttg gtggattgca tatagagcat cccctgcaca ccattcacct gctgctcgat
     3181 gggcagcgcc accgtattca ccagcgtctt ggcatcggcg ccggggtcgg tggtggtgac
     3241 catgatggtg ggcgggacga tctgcggata ttccgcgacc ggcagcgcgc caatagaaac
     3301 cagcccgagc acgacaaaga gcacg
//
LOCUS       DASQCV010000673         1974 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2298808, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000673 DASQCV010000000
VERSION     DASQCV010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2298808"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..655
                     /locus_tag="VEQ16_10525"
     CDS             <1..655
                     /locus_tag="VEQ16_10525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HYP64317.1"
                     /translation="KFAAETLLDGAIFNSGQCCCGIERIYAHESVYDEFVEHAVNFVN
                     AYRLGNPIQQDTNLGPVVTAKAATNIRAQMDEAIAQGARPLIDAKRFDADKPGTAYLA
                     PQILVDVNHSMRFMTEETFGPNVGIMKVKGDEDAIRLMNDSSYGLTTAIFSRDLEAAE
                     SIGDRVATGTVFLNRCDALDPALPWVGTKDTGRGYTLSRWGYETLTRPKSYHLRLAE"
     gene            complement(742..1464)
                     /gene="phbB"
                     /locus_tag="VEQ16_10530"
     CDS             complement(742..1464)
                     /gene="phbB"
                     /locus_tag="VEQ16_10530"
                     /EC_number="1.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018454 - acetoacetyl-CoA reductase
                     activity [Evidence IEA];
                     GO_process: GO:0042619 - poly-hydroxybutyrate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetyl-CoA reductase"
                     /protein_id="HYP64318.1"
                     /translation="MSRVALVTGGTRGIGAAISIALKNAGRTVVASYAGNDEAATAFH
                     KQTGIEVKKFDACDYEKCAAAVKEIETAHGPIEILVNNAGITRDAVLGKMSRDMWDAV
                     IDTNLGSCFNLCKLAFDGMKAKKFGRIVNIGSINGQAGQYGQVNYAAAKSGIHGFTKA
                     LAQEGARFSITVNAIAPGYVDTDMVRAVPPDVLEKIIAKIPRGRLGTAEDIARGVVFL
                     TADEADFVTGSTLSINGGQHMY"
     gene            complement(1726..>1974)
                     /locus_tag="VEQ16_10535"
     CDS             complement(1726..>1974)
                     /locus_tag="VEQ16_10535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrB/QacA family drug resistance transporter"
                     /protein_id="HYP64319.1"
                     /translation="LLNPATQARLDGLQSYFAAHGMTDPAGAREQAIQALGGLVHLQA
                     SYFAYGDSFALLGAAMAGACISTFLLTPPKGPGAPGGH"
BASE COUNT          406 a          674 c          532 g          362 t
ORIGIN      
        1 gaaattcgcc gccgaaaccc tccttgacgg cgccatcttc aattccggcc aatgctgctg
       61 cggcatcgag cgcatctacg cgcatgagag cgtctatgac gaattcgtcg agcacgccgt
      121 caatttcgtc aacgcctacc ggctcggcaa ccccatccag caggacacca atctcggccc
      181 tgtcgtcacc gcgaaagccg ccaccaatat ccgcgcccag atggacgaag ccatcgccca
      241 aggtgcccgc cccctcatcg acgccaagcg cttcgacgcc gacaagcccg gcaccgccta
      301 tctcgcgccg caaatcctcg tcgacgtgaa ccactccatg cgcttcatga ccgaggaaac
      361 cttcggcccc aatgtcggca tcatgaaagt gaaaggcgac gaagacgcca tccgcctgat
      421 gaatgacagc agctacggcc tcactaccgc catcttcagc cgcgacctcg aagccgccga
      481 atccatcggc gaccgcgtcg ccaccggcac ggtcttcctc aaccgctgcg acgcgctcga
      541 ccccgccctc ccctgggtcg gcaccaagga caccggccgc ggctacactt tgtcccgctg
      601 gggctacgaa accctgaccc ggccgaagag ctaccacctg cgtttggcgg aataaggggc
      661 aaaggagagc aatgctccct ggccgttagg ctcgctgcaa gcaaaaccca gggcgcggca
      721 ccgccgcgcc ctgggcttca cttagtacat atgctggccg ccattgatgg agagggtgga
      781 gccggtcacg aaatcggcct cgtccgccgt gaggaacacc acgccgcgag caatatcctc
      841 ggcagtgccg aggcggccgc gggggatttt cgcgatgatc ttctccaaca catcgggcgg
      901 cacggcgcgc accatatcgg tatcgacata accaggcgcg atggcattca cggtgatgga
      961 gaagcgagcc ccctcctgcg ccagcgcctt tgtgaagcca tggatgcctg acttggcagc
     1021 ggcataattc acctggccat attgcccggc ctggccgttg atggagccga tattgacgat
     1081 acggccgaat ttcttggcct tcatgccatc gaaggcgagt ttgcaaagat tgaagcagga
     1141 gccaagattc gtgtcgatta ccgcgtccca catatcgcgg ctcatcttgc ccagcaccgc
     1201 atccctggtg ataccggcat tattcaccag aatttcgatg gggccgtgcg cggtctcgat
     1261 ctccttcacc gccgcggcgc atttctcgta gtcgcaggca tcaaatttct tcacctcgat
     1321 accggtttgc ttgtgaaacg ctgttgccgc ttcatcgttg ccggcatagc tcgccaccac
     1381 ggtccggccg gcatttttca gggcgatgct gatagcggcg ccgatgccgc gtgttccgcc
     1441 agtgaccagt gctactcggg acatttccgt tcctccagat tacgctagac gttagacgaa
     1501 ttatagagac gaagttctgc gccacgttat cgcggacctg ccaagactct ggcggccctg
     1561 tacgatcgta tccgaacaag ttttcacaac aaaatcaact gcgccaccat gctttgaatc
     1621 aaagattccc gtgcaatacg tggaattacg caaaactgtc gcaaagctga tcacgccagg
     1681 ggcttcacct cgcccggtgc cacgctggaa atccgggaga agcgcctaat gtccgcccgg
     1741 cgcccccggc cccttcggcg gcgtcaggag aaacgtgctg atgcacgctc ccgccatcgc
     1801 cgcccccagc aaggcaaagg aatcgccata ggcaaaatag ctcgcttgca gatgtacaag
     1861 cccccccagt gcctgaatgg cctgctcccg tgcccccgcc gggtccgtca tgccatgcgc
     1921 cgcgaaatag ctctgcagcc catccagccg cgcctgggtg gccgggttga gcag
//
LOCUS       DASQCV010000674         8271 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_306137, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000674 DASQCV010000000
VERSION     DASQCV010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 8271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8271
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_306137"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..265)
                     /locus_tag="VEQ16_10540"
     CDS             complement(<1..265)
                     /locus_tag="VEQ16_10540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64320.1"
                     /translation="MSVLACGLEVAALGGLWRRTLLRTAEGDDTRTDVFWLQGPSLFV
                     DLRQPPDRPDFSHVQGLDDLRREDCQWLARQQGFAGIFTQQDGI"
     gene            complement(262..1494)
                     /locus_tag="VEQ16_10545"
     CDS             complement(262..1494)
                     /locus_tag="VEQ16_10545"
                     /inference="COORDINATES: protein motif:HMM:NF013044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HYP64321.1"
                     /translation="MTIDLAALTADIAATAALPLPRARTLPKAAYTDEAFYRVEEQKL
                     FRAGWLCVAHVSELRQPGDYLALELLGEPLVVTRAEDGAVHVLSRVCPHRAMDIIPGS
                     DGFPRKGRAAHLLCPYHVWSFELDGRLRGCAHMQQAEDFAKADWPLTALRSGVWNGFV
                     FVNFDGAAPPLAECYGPLDGTLAPWNIAEMEAVISMDWECDFNWKVMVENWMESYHHI
                     GAHSTTLNPIMPGQYTWSEPEQPHYVHAHLPYTPKLKAEAAAAQARGETLPGFPVIPG
                     LDEEQQAEWGLFVGHPFFMFLTMPDRLLWYRLLPLSAGRCRLQTMTLVGRAALNHPDL
                     PAMIEAETPLLRDFHLEDMVVNKAVQNGLNSAYAVRGRLSHLEEPVWLIQRYLAARLA
                     GSWPEQTDRKPYYGPRAA"
     gene            complement(1548..2507)
                     /locus_tag="VEQ16_10550"
     CDS             complement(1548..2507)
                     /locus_tag="VEQ16_10550"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYP64322.1"
                     /translation="MSRRASFTANLSDVDIRLLRLFSTVVECGGFATAEAQLQTGLST
                     ISKHVKELETRLGVKLCRRGRSGFALTPQGREVHLAAQQVFGALDHFRLRMNGIHTEI
                     VGELNLGIIDTLLTDPNFRLARVLATLKRRAPRVQVNISVDPPNHLEKALLDETLHAA
                     IVSVRQRLPGLDYRLLYSESNNLYCAETHPLYPRCPDDVPLEALADCELAGRTYAAQE
                     ESRLLLGTLPRTATANDVEGLALLVLTGRYIGYLPDHYVAATRFALPLRRVLPRRFGY
                     NVEMELATRSRAHHSPALVSFLTELALEFGLTAGAGSLEESVK"
     gene            2708..3718
                     /locus_tag="VEQ16_10555"
     CDS             2708..3718
                     /locus_tag="VEQ16_10555"
                     /inference="COORDINATES: protein motif:HMM:NF024772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HYP64323.1"
                     /translation="MTICFPLRRALLGAAAGLAMLAGDGGTALAATKINLGIVPWIGY
                     GPIYVAAAKGYFAAQGLDVNMVNFDDPAAIPPAVYSGQVNAGTETYDQVIGTNAKGWH
                     MKVVMPIDYSAGADAMVSTDDITSVSQLKGLKVAYAALTPSDFLLGYALKQVGLSKDD
                     ITSVNVPAEGVPGVMAGGSTKAGVTYEPSVTGIVKAEGGNKFHVLFSSKQAPGLITDV
                     LVVTPKTIKNDPAMITAFIKAFVQGEAYIKSNPDDAYAIVGKALGEGPADAKAQYAGV
                     VNPPLSEMPGVLAKSDKLPSFWASGPVIGGLLKSEGQITAIPAIEDTYDASFINAEAG
                     VK"
     gene            3715..4725
                     /locus_tag="VEQ16_10560"
     CDS             3715..4725
                     /locus_tag="VEQ16_10560"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HYP64324.1"
                     /translation="MSKAALFRYKGGLAPNAAAMGYMAVAYMAGLWLITAPPLLANIL
                     GTLLLAHGLVIAAYFIHDFAHGAIFTKTVHNDLGGKVCAWITGAGFASYAGLKEKHLR
                     HHADRLDVVTFSYRDFLQRQPRWVEKAVLAMEWAYIPAVELLMHGFVIVAQFTRFGEE
                     RKQRALVMLASRAVFFAILACIALKALFFYAVAYILFLHVLRFMDAFQHTFDVYESKS
                     LDAAPPELVRDRAYEQANTYSNLISVSHPILDLLTLNFAYHNAHHARPAVPWHDLPSL
                     HEKLYGPDRTQVLPASTLFTSWHKNRLRRVTDPDYGFVAPVGDRAAQFVGAVGVSFLT
                     AV"
     gene            4725..5501
                     /locus_tag="VEQ16_10565"
     CDS             4725..5501
                     /locus_tag="VEQ16_10565"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acyl homoserine lactonase family protein"
                     /protein_id="HYP64325.1"
                     /translation="MTQVKKFWPLLTGMHRYDKSVSTRHRNEGVMIDAPILAYLIETA
                     NGRILYDVGCDYSKLADPARRERFYGGLSFDPPVMRAEDRLPSRLAQLGLNPKDIDVV
                     FLGHLHFDHAGGLCEFSHADLHVHEKELEAAREPADEAYFGDDFKKVKNWRCACCDYD
                     LAPGVRAIETPGHTAGHMSMLIELPRGKPILLCGDAADLVENLEEEIAPGLCYRDDET
                     QALASIQWLKQLAQQTGAELWPNHDLTFFQAHNIFPQAMS"
     gene            5552..6307
                     /locus_tag="VEQ16_10570"
     CDS             5552..6307
                     /locus_tag="VEQ16_10570"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP64326.1"
                     /translation="MSKTSYRLVALASFLLLLGVWFGLTATGLIDPMFLPSPIDVAEQ
                     AWSWATTDNLLGNTGISIYRVMTGFALSAAMAVPLGLYIGAFMPVRAFFEPLMEFSRY
                     LPAVAFVPLVLLWAGIGEASKIALIWLGTFFQMVLMVSDDVSRVPMSQIEAARTLGAT
                     NAEVVHKVLLRSALPGIFDTLRLTLGFAWTYLVVAELVAANSGVGYAIMQAQRFLQTD
                     RIFVGIIVIGIIGLITDQSLRFVHRKLFPWARK"
     gene            6318..7127
                     /locus_tag="VEQ16_10575"
     CDS             6318..7127
                     /locus_tag="VEQ16_10575"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014197869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYP64327.1"
                     /translation="MSNLAVSQLSKRFDHFEALSEVNLSLESGEFVALVGASGCGKST
                     LLRIIGGLETKTTGTLCIDGRAITAPGRDRAMVFQDYSLYPWLSVRENVLFCRGLKAY
                     SKGQTEATIGDAMRRSNLLIELMGLARVRDASPAALSGGMRQRVAIARALMAQPDFLL
                     MDEPFGALDTQTREVMHDLILHVKETERCGILFVTHDVEEAVYLADRVVVLAPNPGHV
                     DSVWDISLPPRNQELKLTPAFLHYKREITQRIRATSGMVSDLSALQALTTA"
     gene            complement(7349..7627)
                     /locus_tag="VEQ16_10580"
     CDS             complement(7349..7627)
                     /locus_tag="VEQ16_10580"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HYP64328.1"
                     /translation="MSAGVSIVWFDHGEAPKPAEFHAANFPDSHIRRASHASDCPGGK
                     SGDVLIVELAVFGPVFVRLNGGPNFTPNEAVSFQVVTDDQAEADRSCH"
     gene            complement(7995..>8271)
                     /locus_tag="VEQ16_10585"
     CDS             complement(7995..>8271)
                     /locus_tag="VEQ16_10585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64329.1"
                     /translation="IAVLMMGGGKVTPITTVNVRHRTQSFPAAALAKPLVIAYPPDSW
                     TKIGMWRRANYLGGNAPRILHLKASTPHASITKISRFAINQFITQIH"
BASE COUNT         1616 a         2689 c         2361 g         1605 t
ORIGIN      
        1 aaatcccgtc ctgttgcgta aaaatgccgg caaacccctg ctggcgcgcg agccactggc
       61 aatcctcgcg acgcagatcg tccagccctt gcacatggga aaaatccggc cggtccggcg
      121 gctgccgcag atcgacaaag agcgacggcc cctgcagcca gaaaacatcc gtgcgcgtat
      181 catcgccttc cgccgtgcgc agcagcgtgc gccgccacag cccgcccaac gcggccacct
      241 ccagcccgca cgccagcacg ctcatgccgc gcgcgggccg taataaggtt ttcggtccgt
      301 ctgttccggc cagctcccgg ccagccgcgc cgccagataa cgctggatga gccagaccgg
      361 ctcttccaga tgcgagagcc gcccgcgcac cgcataggcg gaattcagcc cattctgcac
      421 ggccttgttc accaccatgt cctccaggtg gaaatcgcgc aaaagcggcg tctccgcctc
      481 gatcatcgcc ggcaggtccg gatgattcaa tgccgcgcgg cccaccaaag tcatggtctg
      541 caaccggcag cgcccggccg agagcggcag cagcctgtac cagagcagcc ggtccggcat
      601 ggtgaggaac atgaagaacg gatgcccgac aaacagcccc cattccgcct gctgctcctc
      661 atccaggccg ggaatcaccg gaaagccggg cagcgtctcg ccgcgcgcct gcgccgccgc
      721 cgcttccgct ttcagcttcg gtgtataagg cagatgcgca tgcacataat gcggctgctc
      781 cggctcgctc caggtatatt gcccgggcat gatcgggttc agcgtggtgc tgtgcgcgcc
      841 gatatgatgg taggattcca tccagttctc caccatcact ttccagttga agtcacactc
      901 ccaatccatg gagataacgg cttccatctc cgcaatgttc cagggcgcca gcgtgccgtc
      961 cagcggccca taacattccg ccaacggtgg cgccgcgcca tcgaaattga cgaacacaaa
     1021 cccgttccac acgccgctgc ggagcgcagt gagcggccaa tcggctttgg caaaatcctc
     1081 cgcctgctgc atatgcgcgc agccgcgcaa ccgcccatcc agctcgaacg accagacatg
     1141 gtaagggcag agcagatgag cagcacggcc cttgcgcgga aacccgtccg agccgggaat
     1201 gatatccatc gcccggtgcg gacacacacg cgacagcaca tgcaccgcgc catcctccgc
     1261 gcgcgtcacc accagaggct cgcccagcaa ttccagcgcc agataatcgc ccggctgccg
     1321 cagctcgctc acatgcgcga cacacagcca gccggcgcga aacaatttct gctcctcgac
     1381 ccggtaaaac gcctcgtccg tataggcggc cttcggcaag gtgcgggccc ggggcaaggg
     1441 cagtgcggcc gttgcggcga tgtcggcggt cagggcggcg agatcgattg tcatgaagcc
     1501 agcctagaaa cgcaccctgg cgcgaaaaaa ggcaaaacat ctccagttca cttgacgctt
     1561 tcttccagcg agccggcgcc agccgtcagc ccgaattcca gcgccagctc ggtgaggaag
     1621 ctgaccaaag ccggcgaatg atgcgcccgc gagcgcgtcg ccagctccat ttccacatta
     1681 tagccgaagc gccgcggcag caccctgcgc agcggcagag cgaagcgcgt ggccgccaca
     1741 taatggtctg gcagatagcc gatatagcgc ccggtcagca caagcagcgc cagcccctcc
     1801 acatcattgg ccgtggcggt gcgcggcagc gtgccgagca gcaggcgcga ttcctcctgc
     1861 gccgcgtagg tcctccccgc cagctcgcaa tccgccagcg cctccagcgg cacatcgtcc
     1921 gggcagcgcg gatagagcgg gtgcgtttcc gcgcaataga gattattgct ctcgctataa
     1981 agcagccggt aatcgagccc tggcagacgc tgccgtacgg acacgatggc ggcatgcagc
     2041 gtctcgtcca gcagcgcttt ttccagatga ttcggcgggt cgacggagat gttcacctgc
     2101 acgcgcgggg cgcggcgctt cagcgtcgcc agcacacggg cgaggcggaa attcgggtcg
     2161 gtgagtagcg tgtcgatgat gccgagattg agctcgccga caatctcggt atggatgccg
     2221 ttcatacgca gccggaaatg gtcaagcgcg ccgaacactt gctgcgccgc cagatgcact
     2281 tcgcgtccct gcggcgtaag cgcaaagccg gagcgcccgc gccggcataa ttttacaccc
     2341 agccgcgtct ccagctcctt cacatgcttg ctgatggtgg aaagcccggt ctgcagctgc
     2401 gcctccgccg tggcgaaacc gccgcattcc accaccgtgg agaacagccg cagcagccgg
     2461 atatcgacat cggagagatt ggcggtgaag gaggcgcgcc gggacatagt ttctggataa
     2521 ggaaagtaaa caggcaaagc aagcgatgtt tttgctcaat caccctggtt actcataaaa
     2581 tatgttcaca aaatcagcat aattgatgat cggactgcga tatttctgct gaaatttcgc
     2641 cattatgatt aaattttgtg ccgatttaaa gatgtcagcc atctgtagcc gccataagga
     2701 tgcaataatg acgatttgtt ttcccctgcg ccgcgctctg ctcggtgccg ccgccggcct
     2761 cgccatgctg gccggcgacg gcggcaccgc ccttgccgcc accaagatca atctcggcat
     2821 cgtgccctgg atcggctacg ggcccatcta tgtggccgcc gccaagggtt atttcgccgc
     2881 ccaggggctg gatgtgaaca tggtcaattt cgacgacccg gcggcgatcc cgccggccgt
     2941 ctattccggc caggtgaatg cgggtaccga gacctatgac caggtgatcg gcaccaacgc
     3001 caaaggctgg cacatgaaag tcgtgatgcc gatcgattat tccgccggcg ccgatgccat
     3061 ggtctcgacc gacgacatca cctccgtgtc ccagctcaag gggctgaagg tggcctatgc
     3121 cgcgctcacc ccgtcggact tcctgctcgg ctatgcgctg aagcaggttg gtctcagcaa
     3181 ggatgacatc acctccgtca acgtgccagc ggagggcgta ccgggcgtga tggcgggtgg
     3241 ttccactaag gccggtgtca cctatgagcc gagcgtcacc ggcatcgtga aagccgaggg
     3301 cggcaacaag ttccacgtac tgttctcctc caaacaggcg ccaggcctca tcactgacgt
     3361 tctggtcgtt acgccgaaga ccatcaagaa cgacccggcc atgatcaccg ccttcatcaa
     3421 ggcttttgtc cagggcgagg cgtacatcaa atccaacccg gacgacgcct atgccattgt
     3481 cggcaaagcg ctaggtgaag gtccggctga tgccaaggcg caatatgccg gcgtggtgaa
     3541 tccaccgctt tccgaaatgc ccggcgtgct ggcaaaatcc gacaagctgc cttccttttg
     3601 ggcctccggg cccgtgattg gcggattgct gaaatccgaa ggccagatca cggcaattcc
     3661 ggccatcgag gatacctacg atgccagctt catcaatgcg gaagccggtg tgaaatgagc
     3721 aaggcggcgc tgttccgtta caaaggcggg ctggcgccga atgccgccgc catgggctac
     3781 atggcggtgg cctatatggc ggggctgtgg ctcatcaccg cgccaccgct cctcgccaat
     3841 attttgggta cgctgctgct ggcgcatggg ctcgtcatcg ccgcttattt catccatgat
     3901 ttcgcccatg gcgccatctt tacgaaaacc gtgcataacg atctcggcgg caaggtttgc
     3961 gcctggatca ccggcgccgg cttcgcctcc tatgcgggcc tgaaggagaa acatctgcgt
     4021 caccatgccg accggctgga tgtggtgacc ttcagctatc gcgatttttt gcagcgccag
     4081 ccgcgctggg tggagaaagc ggtgctggcg atggaatggg cctacatccc cgccgttgaa
     4141 ttgctgatgc atggcttcgt catcgtcgcg caattcaccc ggttcggcga ggagcgcaag
     4201 cagcgcgcgc tggtcatgct cgcctcgcgc gccgtcttct tcgccattct cgcctgcatc
     4261 gcgttgaagg ctttgttctt ctatgcagtc gcctacatac tcttcctgca tgtgctgcgc
     4321 ttcatggatg ctttccaaca cacattcgat gtgtacgaat cgaagagcct cgacgccgcc
     4381 ccgcccgagc tggtgcgcga ccgcgcctat gagcaggcca acacctattc caacctcatc
     4441 tccgtctccc atcctatcct ggatctgctc accttgaact tcgcctatca caatgcccat
     4501 catgcccgcc ccgccgtgcc ctggcacgat ctgccgtccc tgcatgaaaa actctacggt
     4561 ccggatcgca cgcaggttct ccccgccagc acgctcttca cctcctggca caagaaccgg
     4621 ctgcgccgcg tcaccgatcc tgattacggc ttcgttgcgc ccgtaggcga ccgcgccgcg
     4681 caatttgtcg gcgccgtcgg cgtctccttc ctcacggcgg tctgatgacg caggtgaaaa
     4741 aattctggcc gctgctcacc ggcatgcatc gctacgacaa gagcgtctcc acgcgccacc
     4801 gcaatgaagg cgtcatgatc gatgcgccga tcctggctta cctcatcgaa accgcgaatg
     4861 gccgcattct ctacgatgtg ggctgcgatt attccaagct cgccgacccg gcccggcgcg
     4921 agcgtttcta cggcggcctc tctttcgacc cgccggtgat gcgcgcggaa gaccgcctgc
     4981 catcgcgtct ggcccagctc ggcctgaacc cgaaggacat cgatgtggtg ttcctcggcc
     5041 atctacattt cgaccatgcc ggcggcctct gcgaattttc ccatgccgat ctgcatgtgc
     5101 atgaaaagga gctggaagcg gcgcgcgagc cggccgacga agcctatttc ggcgatgatt
     5161 tcaagaaggt caaaaactgg cgctgtgcgt gctgtgatta tgatctggcg cccggtgtgc
     5221 gcgccatcga gaccccaggc cataccgccg ggcatatgtc catgctcata gagctgccgc
     5281 ggggcaagcc catcctgctc tgcggcgatg ccgccgatct cgtcgagaat cttgaagagg
     5341 agatcgcgcc gggactttgc tatcgcgatg acgagacgca ggccctcgcc tcgatacagt
     5401 ggttgaaaca attggcgcag cagacaggag cggagctatg gccgaaccac gatctgacat
     5461 tcttccaggc gcacaacatc ttcccgcaag caatgtcgta acgccgccag cccaggccac
     5521 gcggccaaaa ttatggaccg tccgcggcac catgagcaag accagctaca ggctggtggc
     5581 actcgcctcc ttcctgctcc tgctcggtgt ctggttcggc ctcaccgcca ctgggcttat
     5641 cgacccgatg tttctgccca gtcccatcga tgtcgccgag caggcctgga gctgggccac
     5701 caccgataat ctgctcggca ataccggcat ctccatctac cgcgtcatga ccggcttcgc
     5761 gctctccgcg gccatggccg tgccgctcgg cctctatatc ggcgccttca tgccggtgcg
     5821 cgcctttttc gagcctttga tggaattctc gcgctatcta cccgctgtcg ctttcgtgcc
     5881 gttggtgctg ctctgggccg gcatcggcga ggcttcgaaa atcgccctca tctggctcgg
     5941 cactttcttc cagatggtgc tgatggtgtc tgacgatgtc tcgcgcgtgc cgatgtcgca
     6001 gatcgaggcg gcgcgcactt tgggcgccac caatgcggaa gtggtgcaca aagtgctact
     6061 gcgctcggcc ttgcccggca ttttcgatac gctgcgcctc accctcggct ttgcctggac
     6121 atatctcgtg gtggccgagc tggtcgcggc caattccggt gtcggttatg ccatcatgca
     6181 ggcgcagcgc ttcctgcaga cggaccgcat cttcgtcggc atcatcgtca tcggcatcat
     6241 cggcctcatc accgatcaga gcctgcgctt cgtccaccgc aaacttttcc cctgggcccg
     6301 caaataagga ggcggatatg agcaacttgg ccgtttccca actctcgaag cgctttgacc
     6361 atttcgaggc gctcagcgag gtcaacctgt ccctggagag cggcgagttc gtcgcactgg
     6421 tcggcgcctc gggctgcggc aaatccacac tcctgcgcat catcggcggg ctggagacaa
     6481 aaacaaccgg cacgctctgc atcgacgggc gagcgatcac cgcacccggc cgcgaccgtg
     6541 ctatggtgtt tcaagactac agcctctacc cttggctcag cgtgagggag aatgtcctct
     6601 tctgccgcgg cctgaaagcc tacagcaaag gccaaaccga agccaccatc ggcgatgcca
     6661 tgcgccggtc caatctgctc atcgaactga tgggcctggc ccgcgtgcgc gatgccagcc
     6721 ccgccgccct gtccggcggt atgcgccagc gcgtcgccat cgcccgcgcc ctcatggcgc
     6781 agccggactt cctcctcatg gacgagccct tcggcgcgct ggacacacaa acacgcgagg
     6841 tgatgcatga cctgatcttg catgtgaagg agaccgagcg ctgcggcatc cttttcgtca
     6901 cccatgatgt ggaagaggcc gtctatcttg ccgaccgtgt ggtagtgctc gcccccaatc
     6961 ccggccatgt cgacagcgtc tgggatattt cgcttccacc acgcaaccaa gagctgaagc
     7021 taacccctgc gtttttgcat tataagcgcg agatcaccca acgcatccgc gccacctcgg
     7081 gcatggtgag cgacctttcc gccctgcagg cactgaccac cgcctgacgg tggccgttct
     7141 ccaccggatt atggtggcag attaaagcgg tgtgccgatc ataagttgct cggtggaatg
     7201 gaaaccatca ccggtacctg tgcgaagtcc tgaacttgtg tggcttggga atagactgcg
     7261 catctaagct ggacgcgccg gcagaaaaca gaatcaacaa catcagcacc agccaagcgc
     7321 tcataattct attcctttca aaatatgatc aatgacagga gcggtcggct tccgcttggt
     7381 catcggtcac cacctgaaaa ctcaccgcct cgttgggcgt aaagttgggg ccgccattca
     7441 ggcggacaaa aaccggacca aacacggcga gctcgacgat cagcacatcg cctgatttac
     7501 cgccagggca atcggatgcg tgcgatgcgc gcctgatatg gctgtccgga aaattggctg
     7561 catggaattc cgctggcttt ggcgcctcgc catggtcgaa ccacacgatg ctaacccccg
     7621 cactcaaacc gcttaaacgg cgtgggttgg tgcgagtcga accctcgccc accgatggcc
     7681 gtgcactgct tttgctcctc acaaatgccg gacgcgagag gctcgctgct gcggttccta
     7741 tctggcggga cacccatatg gagattgaac gccgtctcga cggcctctat ccgaataccc
     7801 tgcgtagagc acttatcctg ctcttcagtg gctagccaag cacggcttga tggatgatca
     7861 tgttaccctc ttttgcagat gagggccgca tgagcgaaat tagcggcact gtaaatatgc
     7921 aaaagatgcg ccgactgatc caggtatttt caactttgtg gtcggcgagg aactaacacg
     7981 cagagtgtgt ggagtcagtg gatttgagta ataaactggt taattgcaaa gcgtgagatt
     8041 ttcgtgatcg acgcgtgcgg ggtactggcc ttcaagtgaa gaatgcgcgg ggcattacct
     8101 ccgaggtagt tggcgcgccg ccacattcct attttagtcc acgagtcagg aggataggct
     8161 atgaccaatg gcttggcgag tgcggcggcg ggaaatgact gcgtgcgatg ccgtacattc
     8221 accgtggtaa tcggggtaac cttgcctccc cccatcatca gcacggctat g
//
LOCUS       DASQCV010000675         2470 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3127056, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000675 DASQCV010000000
VERSION     DASQCV010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2470
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3127056"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..336
                     /locus_tag="VEQ16_10590"
     CDS             <1..336
                     /locus_tag="VEQ16_10590"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HYP64330.1"
                     /translation="GCWLMWNAPGMIFKALSDPTRRTLFERLCQEGEQTVASLTARAG
                     ISQPAVSKHLGQLKQAGLVRDRHEGRQTHYCAQPGALAPLIDWTSQMAGFWEARFDDL
                     EILLKRMDQ"
     gene            333..743
                     /locus_tag="VEQ16_10595"
     CDS             333..743
                     /locus_tag="VEQ16_10595"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HYP64331.1"
                     /translation="MNDSQTAARSVVIERDIPYPPEKIWRALTQPHLIEAWLMKNDFA
                     PAPGHRFTLRGDWGSVDCQVLTVEPGKALSYSWDAMGLESVVTWTLTPTSTGTRLRME
                     QAGFRPDQEQAFQGAKFGWQRFFEALEQVLARPD"
     gene            785..1561
                     /locus_tag="VEQ16_10600"
     CDS             785..1561
                     /locus_tag="VEQ16_10600"
                     /EC_number="1.13.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class III extradiol ring-cleavage dioxygenase"
                     /protein_id="HYP64332.1"
                     /translation="MLPTLFLSHGSPMTAIEDSPARRFLTQLGDELPRPEAILVASAH
                     WEAGAPALSAPPVNETIHDFYGFPPQLYALTYAPPPAPSLAARGAALLHSAGLAATVD
                     HHRGLDHGAWVPLLLAWPAHDIPVAQISIQTHLGAAHHLALGAALAPLRSENVLIIGS
                     GSFTHDLRRFRGATFDAPETPDVTAFSNWMDEKILSSDLDALADYRRQAPYAAAEHPT
                     EEHILPLHVAAGAAGAGAKAERLHRSVEFGFMRMDAYKFS"
     gene            complement(1626..>2470)
                     /locus_tag="VEQ16_10605"
     CDS             complement(1626..>2470)
                     /locus_tag="VEQ16_10605"
                     /inference="COORDINATES: protein motif:HMM:NF014801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HYP64333.1"
                     /translation="TVTQEAASRTGLIAGTPVICGSNDTTVECFGVGATTPGIGAIKL
                     ATAGVLYLVTQGPVVRPPISCYPHILPGLYYAATGTNSCASAHRWLRDLMFAEGGFTA
                     MDALAAATPRGARGLLFHPYLQGERAPYWDPHLRADFIGLTISHGKPEFARALYEGLS
                     FSIRDLLDAARAEGFVFSTIRLMGGGARSACWRQIIADVTGLTIERTEAADASFGAAL
                     LAGVGTGIFASHEEAIASCVRLAGTTAPEPDAQKFYNELFGIYKDAQAALAGLNHRLH
                     ALVT"
BASE COUNT          428 a          751 c          852 g          439 t
ORIGIN      
        1 ggttgttggt taatgtggaa cgcccccggc atgattttca aggccctctc cgacccgacg
       61 cggcggaccc tgttcgaacg cctctgccag gaaggggagc agacggtggc ttccctcacg
      121 gcgcgggccg gcatctcgca gcccgccgtc tcgaaacatc tcggccagct caaacaggct
      181 gggctggtgc gcgaccgcca tgaaggccgc caaacgcatt attgcgccca gcctggcgcc
      241 ctggccccgc tcatcgattg gacgagccag atggccggat tctgggaggc ccgcttcgac
      301 gatctcgaaa ttttgttgaa aaggatggac caatgaatga cagccagacc gcggcgcgtt
      361 ccgtcgtcat cgaacgcgac atcccctatc cgccggaaaa aatctggcgg gctttgacgc
      421 aaccgcatct catcgaggcg tggctgatga aaaatgattt tgcaccggcg cccggccacc
      481 gcttcacgct gcgtggcgac tggggttccg tcgattgcca ggttctgacg gtcgagccgg
      541 gcaaggcact ttcttacagt tgggatgcca tggggctgga gagcgtcgtg acctggaccc
      601 tgacgccgac aagcaccggg acgcgcctgc gcatggagca ggcggggttc cgcccggacc
      661 aggagcaggc attccagggc gcgaaattcg ggtggcagcg tttcttcgag gctttggagc
      721 aggttctggc gcggccggac tgagccatat tggcaggggc cggggatgag cccagatagg
      781 agccatgctg ccaaccttat tcctgagcca tggctcgccg atgaccgcga tcgaggacag
      841 cccggcgcgg cgttttttaa cccagctcgg cgatgagctg ccacgcccgg aggcgatatt
      901 ggtggcctcg gcgcattggg aggcaggggc gccggcgctt tcggcgccgc ccgttaatga
      961 gaccatccat gatttttatg ggttcccgcc ccagctctac gcgctgacct acgcgccgcc
     1021 gcccgcgccg tccctggcgg cgcgcggggc ggcgttgctg cacagcgcgg ggctggcggc
     1081 cacggtggac catcatcgcg ggctggacca tggtgcctgg gtgccgctgc tgctggcctg
     1141 gccggcgcat gatattccgg tggcgcagat ttccatccag acgcatctgg gtgcggcgca
     1201 tcatctggcg ctcggcgccg ccttggcgcc gctgcggagc gaaaacgtgc tgattatcgg
     1261 cagcggcagc ttcacccatg atttgcggcg tttccggggt gctacgttcg atgcgccgga
     1321 gacgccggac gtgaccgcat tctccaactg gatggatgaa aaaattctca gcagcgattt
     1381 agacgcgctg gccgattacc gccgccaggc gccctacgcc gcggcggaac atccgaccga
     1441 agagcatata ttgccgctgc atgtggccgc gggcgcggcc ggcgcgggcg cgaaagctga
     1501 gcgcctgcac cgctcggtcg agtttggttt catgcgcatg gatgcttata aattctcctg
     1561 accgcgggtg aaattttgcg gagattcgtt gcattgccgg cacgtcttgc gggcccgcac
     1621 attagctatg tgaccaacgc atgcagccgg tggttgagac cggccagggc cgcctgggcg
     1681 tctttgtaaa tcccgaataa ttcattgtag aatttttgag cgtctggctc cggtgcggtg
     1741 gtgccggcca ggcgcacgca gcttgcgatg gcctcttcat ggctcgcgaa aatgcctgtg
     1801 cccacgccgg ccagcagcgc cgcgccgaag gaggcatccg cggcttcagt gcgctcgatg
     1861 gtgaggccgg tgacatccgc gatgatctgg cgccagcagg cgctgcgcgc gccgccgccc
     1921 atgaggcgga tggtgctgaa cacgaaaccc tccgcgcgcg cggcatcgag caggtcgcgg
     1981 atggagaagg agaggccttc atacagagcg cgggcgaatt ccggcttgcc gtgggagatg
     2041 gtgaggccga tgaaatcggc gcgcagatgc gggtcccagt aaggcgcgcg ctcgccttgc
     2101 agataagggt ggaacaagag cccgcgcgcg ccgcgcggtg tggcggcggc gagcgcgtcc
     2161 atggccgtga acccgccttc agcgaacatc aaatcgcgca gccagcgatg cgcggaggcg
     2221 caagaattcg tgccggtggc ggcataatag aggccgggca ggatatgcgg gtagcaggag
     2281 atgggcgggc gcaccaccgg cccttgcgtg acgagataaa gcacgccggc ggtggcgagt
     2341 ttgatggcgc cgatgccggg cgtggtggcg ccaacaccga aacattcaac cgtggtgtcg
     2401 ttggagccgc atatcaccgg tgtgccggca ataagcccag tgcgtgaagc ggcttcttgc
     2461 gtgacggtgc
//
LOCUS       DASQCV010000676         2038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3127064, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000676 DASQCV010000000
VERSION     DASQCV010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3127064"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..875
                     /locus_tag="VEQ16_10610"
     CDS             <1..875
                     /locus_tag="VEQ16_10610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase family protein"
                     /protein_id="HYP64334.1"
                     /translation="PVLATEATLQPIRKFGFDAAILFSDILILPMALGQELRFTEGEG
                     PRLPPLQRAAELRLEKAPGIYAPVLQTVANLRAALPRETALIGFAGGPATVACYMLDG
                     EGGGGFPRIRQLAYENPGFVNDVINILTEATIIYLQGQMDAGADCLMLFESWAGIFPP
                     AQFRKLVIEPNRRIAAALKAKNPAAKIIGFPRLAGLMLGEYVRKTGIDAVGLDTVTGI
                     SHAAAACPENTIFQGNLDPLLLKLGGAAMEEAVQNLLASVRGRPHIFNLGHGITPDVP
                     EKNVARLMELIRGA"
     gene            875..1918
                     /gene="hemH"
                     /locus_tag="VEQ16_10615"
     CDS             875..1918
                     /gene="hemH"
                     /locus_tag="VEQ16_10615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HYP64335.1"
                     /translation="MRTAIILFNLGGPDGPDSIKKFRINLFSDKAIIRAPIFIRFWLA
                     RLIAASSAKSAAANYALMGGKSPLLAHTQAQARALEEALGSDYKAFPAMRYWHPFARE
                     VVRDVKAWNPDRILLLPLYPQFSTTTSGSSLNDWREAAANAGLAKPTTTLCCWHDDPA
                     YAAAMAALVDEKIAEAQNALPSAKIRILYSAHGLPESIVKAGDPYQAQIEVSAAAIQS
                     RLAQPEIEHLVCYQSRATPQKWLGPSTIEAIEQAGRDKAALAIVPIAFVSDHIETLVE
                     LDIENRHLAEACDVPGYFRVRAPNTDPAFIAALASIVRGAENPGLCRAGSPCPSLSCQ
                     DRKNCPWTSHHAA"
BASE COUNT          394 a          739 c          528 g          377 t
ORIGIN      
        1 atccggtcct ggccacggag gctacgctcc agcccatccg caaattcggc ttcgatgcgg
       61 caatcctgtt ctctgacatc cttatccttc ccatggcgct gggccaggag ctgcgcttta
      121 ccgagggcga gggcccgcgc ctgccgcctt tgcaacgcgc cgccgagctg cggctggaaa
      181 aggcccccgg catctatgcg ccggtgctgc agacagtcgc caatctacgc gccgccttgc
      241 ccagggagac tgccctcatc ggtttcgccg gcggtcccgc caccgtggcc tgctatatgc
      301 tggatggcga aggtggcggc ggcttccctc gcatcaggca gcttgcctat gaaaatcccg
      361 gtttcgtcaa tgatgtcatc aatatcctca ccgaagccac catcatttat ctgcaaggcc
      421 agatggatgc gggcgccgac tgcctgatgc tgttcgaaag ctgggccggc atttttcctc
      481 ccgcccagtt ccgcaaactg gtcatcgagc ccaaccgccg catcgccgcc gcgctgaagg
      541 ccaaaaatcc cgccgcaaaa atcatcggct tcccccgcct ggctggcctc atgctgggcg
      601 aatatgtgcg caagacaggc atcgacgccg tcgggctgga cacggtcacc ggcatctccc
      661 atgccgccgc cgcctgcccg gaaaacacca tcttccaggg caatctcgac ccgctcctcc
      721 tcaagctcgg cggcgcggcc atggaggagg cagtgcaaaa tctgctcgcc agcgtgagag
      781 gccggccgca tattttcaat ctcggccacg gtatcacgcc agacgtgccg gagaaaaacg
      841 tggcaaggct gatggagctc atccggggcg cgtgatgcgg acagccatca tcctgttcaa
      901 tcttggcggc ccggacggcc cggattccat caaaaaattc aggatcaatt tattttcaga
      961 caaggcgatc atccgcgccc ccatcttcat ccgcttctgg ctggccaggc ttatcgccgc
     1021 ctcatccgcc aaatccgccg ccgcaaatta cgccctgatg ggtggcaaat cccccctcct
     1081 ggcccatacc caggcccagg cccgcgcctt ggaagaagcc ctcggctcgg attacaaagc
     1141 ttttccggcc atgcgctact ggcacccctt tgcccgtgaa gtggtacggg acgtaaaagc
     1201 ctggaaccca gacaggattc tgctcctgcc cctctacccg caattttcca caaccacttc
     1261 cggctcctcg ctgaatgatt ggcgcgaggc agccgccaat gccggcctcg ccaaaccaac
     1321 caccacccta tgctgctggc atgacgaccc cgcctacgcc gccgccatgg ctgctttggt
     1381 ggatgaaaaa atcgccgaag cgcaaaacgc cctgcccagc gcgaaaatcc gcatccttta
     1441 ttccgcccat ggcctgcccg agagcatcgt gaaagccggc gatccctacc aggcccaaat
     1501 cgaagtgagc gccgccgcca tccaatcccg ccttgcacag ccggaaatcg agcatctggt
     1561 ctgctatcaa tcccgcgcca ccccgcaaaa atggctcggc cccagcacca tcgaggccat
     1621 cgaacaagcc gggcgcgaca aagccgcctt ggccatcgtc cccatcgcct tcgtctccga
     1681 ccatatcgaa acgctggtcg agctcgacat cgaaaaccgc catctggccg aggcctgtga
     1741 tgttcccggc tatttccgcg tccgcgcccc caataccgac cccgccttca tcgccgccct
     1801 cgcctccatt gtccggggtg cggaaaaccc aggcctctgc cgtgctgggt caccatgccc
     1861 ctccttatct tgtcaggacc gcaaaaactg cccatggacc tcccatcatg cggcctgaac
     1921 tgattatttt cgactgtgac ggcgtcctca tcgacagcga aggcgttgcc tccagcgtcg
     1981 tcgcggaaga tctcaccacc cttggctgga ccatggatgc cgccgaagcc atgcgcct
//
LOCUS       DASQCV010000677         2809 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1637216, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000677 DASQCV010000000
VERSION     DASQCV010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1637216"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..812)
                     /locus_tag="VEQ16_10620"
     CDS             complement(<1..812)
                     /locus_tag="VEQ16_10620"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HYP64336.1"
                     /translation="MGRLKRLDGVRGLLAVYVMLGHALPLTIAPGWAQALVRHGEAAV
                     DLFFALSGLVIAFSLARFSGFFRPFIAARMRRLLPAYLPVLAASIALGMLGDPLRGLP
                     WAGAPARDILSPALPAPLWPHILAHVALLHGIIPQPVLPYAYVTLLGPAWSLSTEWQF
                     YLLIGLVAPRHMGRFAIALLAAGAIWHALPFGPLFGRAFLPDAAPYFALGLASAAWLS
                     GQRRALLPCIAGAWAIGLAAGPGKSFTPLIWAILFLTQTESWGAPLQARWLQ"
     gene            complement(912..2414)
                     /locus_tag="VEQ16_10625"
     CDS             complement(912..2414)
                     /locus_tag="VEQ16_10625"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019461027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HYP64337.1"
                     /translation="MDQLAPSLIQSQAHRRAVVDLGSNSVRLVIYEGENRNPLQIFNE
                     KAVLRLAKGMTSTGRLDEAASTQAETVLHRYAAIARAMGATPFDVLATSAVRDAENGA
                     EFVQRLSTRLPEMRIKILSGAQEAELSAYGVLCGIPGADGILADLGGGSLELVRLDAG
                     RIGPAATMPVGVIRLADRAGEDLLKARAIVTEALEAVSFAAEAAGKDLYVSGGAFRAL
                     ARIHIAQTGYPLNMVHHYTIGREEARDLAGVVSEAGRKLIERMPGVPRRRIEDLPYAA
                     IILRRLLRATGASRVVFSANGLREGWFTRLLSEEIRAEDPLLAASRDLTRGVIRDSDL
                     PPALIAWTNPLFPAETPAQTRLRHAACWLSDIGSHEHPEYRAEQAFLRVLRQAGMALD
                     HHARAFLALTTALRYEAVPESPFLAPARTLLDMHATRRAETLGIALRLAYTLSAGTPH
                     LLAGTTLTLGNGRLILGLAAANGVFAGDAVLRRLDRLAQMLGVEAETELH"
     gene            complement(2482..>2809)
                     /locus_tag="VEQ16_10630"
     CDS             complement(2482..>2809)
                     /locus_tag="VEQ16_10630"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP64338.1"
                     /translation="FATLLAQPGMHGFLDERGGFLLLRIVLDEAEIITIGSIPRRQGI
                     ASSLLQQAIAAARTAAVQKIHLEVAEDNHPARALYTKHGFLPAGRRKSYYLNGADALT
                     LTLDLG"
BASE COUNT          512 a          778 c         1111 g          408 t
ORIGIN      
        1 aattgcagcc agcgtgcttg cagaggcgcg ccccaggatt cggtctgggt caggaacaga
       61 atggcccaga tgagcggcgt gaaagatttt cccgggcccg ccgcgaggcc gatggcccag
      121 gcaccggcga tacagggcag caaggcgcgg cgctgcccgg acagccaggc agcgctggcg
      181 aggcccagcg cgaaataggg ggcggcatcg ggcaggaagg cgcggccgaa gagcgggccg
      241 aagggcaggg cgtgccagat ggccccggca gcgagcaagg cgatggcaaa gcggcccata
      301 tggcgcggag cgacgagtcc gatgagcaga tagaattgcc attcggtgga gaggctccag
      361 gccggaccga gcagggtgac ataggcatag ggcagcacgg gctgcgggat gatgccgtgc
      421 aacagtgcga catgggccag gatatgtggc cagagtggcg cggggagggc gggggataga
      481 atgtcccgcg ccggggcgcc ggcccaaggg aggccacgca gcgggtcgcc cagcatgccc
      541 agggcgatgc tggcggcgag gacggggaga taggctggca gcaatcggcg catgcgtgcg
      601 gcgatgaagg ggcggaagaa gccactgaac cgggccaggg agaaggcgat gacgaggccg
      661 gagagggcga agaacaggtc aaccgcggcc tcgccatggc gaacgagggc ctgtgcccag
      721 cccggcgcga tggtgagcgg tagagcgtga ccaagcatga cgtaaaccgc cagcagcccg
      781 cgaacaccat ccaggcgttt aagtcgtccc atttaatcaa cttaaacggg aaaatcaagc
      841 ttggccagcg cctagagggt tgtgtggctt ctaccaaaat taatggggtt caggggcgga
      901 gcccctgggc ctcaatgcaa ctccgtctcc gcctccaccc ccagcatctg cgccagccgg
      961 tctagccggc gtagcacggc gtcgcccgcg aacacgccat tcgcggcggc gaggccgagt
     1021 atgagacggc cattgcccaa ggtgagggtg gtgccggcga gcagatgcgg cgtgccggcg
     1081 gagagggtgt aggcgaggcg gagcgcgatg cccaaggtct cggcgcggcg ggtggcgtgc
     1141 atatccagca atgtgcgggc cggggcgagg aagggggatt cggggacagc ttcgtagcgc
     1201 agcgccgtgg tgagggcgag gaaggcgcgg gcatgatggt cgagcgccat gccggcctgg
     1261 cgcagcacgc gcagaaaagc ctgctcggcg cgatattcgg gatgttcgtg gctgccaatg
     1321 tcggaaagcc agcaggcggc atggcgcagg cgcgtttgcg ctggcgtttc ggcggggaag
     1381 agtgggttgg tccacgcgat caaggctggg ggcaggtcgg agtcgcggat gacgccgcgg
     1441 gtgaggtcgc gcgacgcggc gagcagcggg tcttcggcgc ggatttcctc cgagagcagg
     1501 cgggtgaacc agccttcgcg cagcccgttg gcggagaaga cgacgcggga agcaccggtg
     1561 gcgcgcagca ggcggcggag aataatggcg gcgtagggca gatcctcgat gcggcggcgg
     1621 ggcacgccgg gcatgcgctc gatgagcttg cggccggcct cgctcaccac gccggcgagg
     1681 tcgcgcgctt cctcgcggcc gatggtgtag tgatgcacca tgttcagcgg gtagccggtc
     1741 tgggcgatat ggatgcgcgc cagggcgcgg aaggcgccgc cggagacata gaggtccttg
     1801 ccggcggcct cggcggcgaa ggaaacggct tcgagtgcct cggtgacgat ggcgcgggct
     1861 ttcagcaggt cctcgcccgc cctgtcggcc aggcggatga cgccgaccgg catggtggcg
     1921 gcggggccga tgcgcccggc atcgagccgc accaattcga gcgagccgcc gccgagatcg
     1981 gcgaggatgc cgtcggcgcc ggggatgccg catagcacgc cataggcaga gagttcggct
     2041 tcctgcgcgc cggagagaat tttgatccgc atctcgggca ggcgggtgga gaggcgctgc
     2101 acgaattccg cgccattctc ggcgtcacgg acggccgaag tggcgaggac atcgaagggc
     2161 gtggcgccca tggcgcgggc gatggcggca tagcggtgca gcacggtttc cgcctgggtg
     2221 ctggcggctt cgtcgagccg gccggtgctg gtcatgcctt tcgccaggcg cagcacggct
     2281 ttctcgttga aaatctgcag gggattgcgg ttttcacctt cgtaaatcac gaggcggacc
     2341 gagttggagc cgagatcgac aacggcgcgg cgatgcgcct gggactggat gagcgagggg
     2401 gcgagctggt ccatggtggt atgttccccg gattgaagag cgctcatagc taaagttccg
     2461 tgacagtcat ttaggggctg tttagccgag atcgagggtg agagtcagcg cgtcggcgcc
     2521 attcagataa tatgatttgc ggcggccggc agggagaaag ccgtgtttgg tgtagagggc
     2581 acgggcggga tggttatctt ccgcgacttc caggtgtatt ttctgcacgg cagcggtgcg
     2641 ggccgcggcg atggcctgtt gcaggagtga ggaggcgatg ccctggcggc gcggaatgct
     2701 gccgatggtg atgatttccg cctcgtccag aacgatgcgc aggagcagga atccgccgcg
     2761 ctcgtcgagg aagccatgca tgccgggctg ggcgagcaaa gtggcgaag
//
LOCUS       DASQCV010000678         1911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_973329, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000678 DASQCV010000000
VERSION     DASQCV010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1911
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_973329"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VEQ16_10635"
     CDS             <1..470
                     /locus_tag="VEQ16_10635"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014198727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S16 family serine protease"
                     /protein_id="HYP64339.1"
                     /translation="SLRGLVLPVGGIKEKVIAAHRAGIKRVMLPARNRKDFEDIPQEA
                     RRELEFIWLERVEEAIAAALRTSFRRACTRSRRFNPLTPGSSEAAGSRPEQISAQPIA
                     GMPSRERAAANNILLGSCSHTATLRRCIFSLRCSVITSTIPLFVKSAQPCAQR"
     gene            536..>1911
                     /locus_tag="VEQ16_10640"
     CDS             536..>1911
                     /locus_tag="VEQ16_10640"
                     /inference="COORDINATES: protein motif:HMM:NF042645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6600 domain-containing protein"
                     /protein_id="HYP64340.1"
                     /translation="MNAAASRSRTSLLFSRPLLAIMLATGTMASWPIIDGSNAPVLAQ
                     ASVSVEFRTALQPYGRWERHSHWGQVWVPENRPRGWRPYTVGHWAYTDDWGWYWVSDQ
                     VEDDWGWIVYHYGHWAFDGDLGWIWVPGDEWGPGWVAWRRGAEYIGWAPLAPDADVEV
                     IDQPNVWVFVRKHDFVAPRIADVIVPEREFANVIRDTVVVNRTVNLRDRRFAVNPGIE
                     PGIIAAAVGRPIHSFDVRPRVLAGTARIPGATEVRADQLGRAQERGQFRASVQQTQRE
                     IRPAANVGAPQPLGRGEQGRLGNNPPRLATQQGERGQPPATQGRVPQQGQAGERQQGA
                     PGGQNAQQPPLRPGTQGLNPREQRGQNPQAARPQEQRPQAQPQRQPLSTQGLNPREQR
                     GPNPQAARPQEQRQPQAQPQRQPPSTQGLAPREQRGPNPQTARPQPQPEPQPQRQPQA
                     QPPQAQRAP"
BASE COUNT          357 a          625 c          665 g          264 t
ORIGIN      
        1 tcagcctgcg cgggctggtg ctgccggtgg gcggaatcaa ggagaaggtc atcgccgcgc
       61 accgggccgg catcaagcgc gtgatgctgc cggcgcgcaa tcgcaaggac ttcgaggaca
      121 tcccgcagga agcgcgccgc gagctcgagt tcatctggct cgagcgcgtc gaggaggcga
      181 tcgccgcggc gctgaggaca agcttccggc gggcgtgcac gagaagccgg cgcttcaacc
      241 cgttgacgcc ggggtcgagt gaagcggcgg gatcgaggcc ggaacaaata tccgcgcagc
      301 caatcgcggg gatgccatcg cgcgagcgcg cagcggcaaa caatattctt ctaggaagct
      361 gctcgcacac agctacgttg cggcgctgta ttttttcgct gcgctgcagc gtgatcactt
      421 ccaccattcc actattcgtg aaatcggcac aaccgtgcgc tcaacggtga ggaacaacac
      481 cgctccgccg acgttatcgt taaggctgaa aatcaaaagc atggaggagc ggaatatgaa
      541 cgcagccgca agccgatccc gaacgtctct ccttttttcc cgcccgttgc tggcgatcat
      601 gctggccacc ggcacaatgg ccagctggcc gatcatcgac ggcagcaacg cgccggtgct
      661 ggcgcaggct tccgtctcgg tggaattccg caccgcgctg cagccgtacg gcagatggga
      721 gcgacattcg cactggggcc aagtctgggt gcctgaaaat cggccgcgcg gctggcgccc
      781 ctacacggtg gggcattggg cctatacgga cgactggggc tggtactggg tttccgatca
      841 agtggaggac gactggggct ggatcgtcta tcactatggc cattgggcat tcgatggcga
      901 tctgggatgg atctgggtcc cgggcgacga gtggggcccg ggttgggtgg cgtggcgtcg
      961 cggcgcggaa tatatcggct gggcgccgct ggcgccggac gcggacgttg aggtgattga
     1021 tcagccgaac gtgtgggtgt ttgtgcgcaa gcacgatttt gtggcaccgc gcatcgccga
     1081 tgtgatcgtt cctgagcgcg aatttgcaaa cgtaatccgc gatacggtgg tggtgaaccg
     1141 caccgtcaac ctgcgcgacc ggcgatttgc ggtgaatccg ggaatcgagc ccgggatcat
     1201 cgccgccgcc gtgggtcgcc cgatccactc cttcgatgtg cggccgcgcg tgctggccgg
     1261 cacggctcgc atcccgggcg caaccgaggt gcgggcggat cagcttgggc gggcgcagga
     1321 acgcgggcaa ttccgcgcgt cggtgcagca aacgcagcgc gagatcagac ccgcggcaaa
     1381 cgtcggcgcg ccgcagccgc tggggcgggg cgagcaaggt cgcctgggca ataatccgcc
     1441 gcgcctcgcc acgcagcagg gcgaacgcgg tcaaccgccc gcaacgcaag ggcgcgtccc
     1501 gcaacaaggt caggcgggcg agcggcagca aggcgcgcct ggcgggcaaa acgcgcaaca
     1561 accgccgtta cgcccgggca cgcagggtct gaacccacgc gagcagcgtg gtcagaaccc
     1621 gcaagccgcg cggccgcagg agcagcggcc gcaagcccag ccgcaacgcc agcccctgag
     1681 cacgcagggc ctgaacccgc gcgagcaacg cggcccgaat ccgcaagccg cgcggcccca
     1741 ggagcagcgg cagccgcaag cccagccgca acgccagcct ccgagcacgc agggtctggc
     1801 cccgcgcgag cagcgtggcc cgaatccgca aaccgcgcgg ccacagccac agccagagcc
     1861 gcagccgcag cggcaaccgc aagcccagcc gccgcaggca cagcgagctc c
//
LOCUS       DASQCV010000679         5968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2133595, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000679 DASQCV010000000
VERSION     DASQCV010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5968
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2133595"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..1326)
                     /gene="purD"
                     /locus_tag="VEQ16_10645"
     CDS             complement(58..1326)
                     /gene="purD"
                     /locus_tag="VEQ16_10645"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HYP64341.1"
                     /translation="MRVLIIGSGGREHALAWAIAQSPLLTKLFVAPGNPGTAEVAENV
                     PLRTNDIPGLVAFAKDQKIDLVVPGPEAPLVAGIADALAAVGIACCGPSAAAAQLEGS
                     KKFTKEVADGAGIPTAAWASFAHAEEAHDYIEAVGAPIVIKADGLAAGKGVVVAATPE
                     EAHDAVTAIMEDKVHGAAGSLVVIEECMVGEEISVFALCDGEEAVYFGVAADHKRVGE
                     GDTGPNTGGMGAIFSPPWATPEVVAQSMDRIVRPALREMAKRGTPFRGFLFAGLMVTE
                     QGPKLIEFNVRFGDPECETVLPMLASDLLPTLKAATDGTLKDVKLDWRDGSSATVVMC
                     AKGYPGAYATGSEIYGLEEAGQIEGVTIFHAGTMAEQNGILANGGRVLAVNGTGVDLR
                     TALGRAYAAIDTLDWEDGFCRRDIGRRALG"
     gene            1374..2852
                     /gene="xseA"
                     /locus_tag="VEQ16_10650"
     CDS             1374..2852
                     /gene="xseA"
                     /locus_tag="VEQ16_10650"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014105950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HYP64342.1"
                     /translation="MSEIGQNTPEYSVSELAGAVKRTLEGAFGRVRVRGEITEFKAYG
                     SGHQYFALKDEGAKIRAIIWKGVVPRVGLKAENGVEVIATGRLTSYPERSEYQLIVER
                     LEYAGAGALLARIEALRIKLQAEGLFERRRALPMLPKIIGVVTSAQGAVLQDIKTTIA
                     RRFPRPILLWPVPVQGEGAAERIAAAIEGFNNLPPDLPQPDVLIVARGGGSLEDLMAF
                     NDEAVVRAAAQSKIPLISAVGHETDTTLIDFAADRRAPTPTAAAEMAIPARAELLADL
                     AQRAARLEGAQARLLHLARAGLERAGAKLPDLPTMLGAARQRLDDRAERLALSLPNFL
                     SAKRGRVERLALRHTREIISSLRSRVAVQAQRLLVALPNFLRADGKRLDAASYRLTHP
                     GTEIALRRGRVEALAQRLSAPLSSQLSAARLRLDSVSARLESVSYERVLTRGFALVTT
                     AKGTPVTAAAKVTPGSALKLRFADGEVAVKAEKPTKQLDLGF"
     gene            complement(2879..3304)
                     /locus_tag="VEQ16_10655"
     CDS             complement(2879..3304)
                     /locus_tag="VEQ16_10655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HYP64343.1"
                     /translation="MTLTLDDAQSILNQAVLFAAAQKFKPLAIGVLDARGALKAFVAQ
                     DGTSLKRGEVALAKAQGALGLGMGSRALMKRAEQQPYFIAAATSAIGGALVPVPGGVL
                     IKSGSDIIGAVGISGETSDNDEAAALAGIAAAGFTGDGG"
     gene            3444..3878
                     /locus_tag="VEQ16_10660"
     CDS             3444..3878
                     /locus_tag="VEQ16_10660"
                     /inference="COORDINATES: protein motif:HMM:NF018777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EthD domain-containing protein"
                     /protein_id="HYP64344.1"
                     /translation="MYRVMFLLKRKPHLTHEQFRTHFERSHAPMALKFCGYLFSQYQR
                     HYTDTVYCGGDSRKPDSGYGAKPWNWDLLSVWTLPSEENFNEVIRIMQSPEVAHLFEE
                     DEDRFIDREATVMIPCSVEDMGILFNPKGTVFDTPTGVPSWD"
     gene            complement(3936..5492)
                     /locus_tag="VEQ16_10665"
     CDS             complement(3936..5492)
                     /locus_tag="VEQ16_10665"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HYP64345.1"
                     /translation="MPRVLIAEDNSANVLLIRDFCKDMDFEPMVVEDGRAVVEAVRSS
                     PPDVILMDIDAPIVDGLTATIEIRGLHNVGEQMMIIGLNSGSPAMAAACRIAGMNQIL
                     TKPLQPERLMAALRAARAPLNLQAAVSEEHQEETEIDELLARRVADIFGSIPAGTPCA
                     RLHYINAPKLAVQFGEDWPDVSSTIETVTRALIEQNIGDKAVYKKAGELDFILIAPGL
                     SRESCAAKCQAIAKEICRALADDEAGAKFHIRTVLFDANPVEAGEAPPDAATLAAQAR
                     RKNPDILPWTRLIFWPAWDVQKRKFPIHSVRVDRDETGAVLPEAEAAMREGELNKYYE
                     ALDLSAIADLVERLDGYDTLEQPKLLLLPLHLCTLEALTVMTRYLRYMEKIPKKIRER
                     LIIELHAVPPDMRAVQIAELQKPILPHCLHTMLVVPSSYNKFDVLKQISGQLVALKLP
                     ETVPDAMPDIAPLKLFSQRAKQTGLPLAVSMVNNRLLRDWGLTSCRYVVGPAVALPQM
                     ALGPHAKFIA"
     gene            complement(5628..>5968)
                     /locus_tag="VEQ16_10670"
     CDS             complement(5628..>5968)
                     /locus_tag="VEQ16_10670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007435888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HYP64346.1"
                     /translation="RTPAFTRFNVFLRDSFSCQYCDARRVTQELTFDHVIPRARGGRT
                     SWENVVTACGPCNLRKGSKMPRECGMIPRIEPRRPTSYELQETGRHFPPNYLHESWRD
                     FLYWDTELEG"
BASE COUNT         1115 a         2022 c         1768 g         1063 t
ORIGIN      
        1 cgcagaaaat cgccgccagg cggccgccag agcgcgtttt caaacagtct ctaagcgcta
       61 gcccagcgcc cggcgcccga tatcgcggcg gcagaacccg tcttcccagt ccagcgtatc
      121 aatggcggca taggcgcggc ccaaggcggt gcgcaaatcc acgccggtgc cattcaccgc
      181 cagcacgcgc ccgccattgg cgaggatgcc attctgctcc gccatggtgc cggcatggaa
      241 aatggtcacg ccttcgatct gcccggcttc ctccagcccg tagatctccg agccggtggc
      301 gtaggcgccg ggatagccct tggcgcacat caccaccgtg gccgagctgc catcgcgcca
      361 gtccagcttc acatccttca gcgtgccatc cgtcgccgcc ttcaaggtgg ggagcagatc
      421 gctcgccagc atcggcagca ccgtctcgca ttccgggtcg ccgaagcgga cattgaattc
      481 gatcagtttc ggtccctgct ccgtcaccat caacccggcg aaaaggaagc cgcggaacgg
      541 cgtgcctcgc ttggccatct cgcgcaaagc cgggcggacg atgcggtcca tgctctgcgc
      601 caccacctca ggcgtcgccc agggtggcga aaaaatcgcg cccatgccgc cggtattcgg
      661 gccggtatca ccctcgccca cgcgcttatg gtcggccgcc acaccgaaat agacggcctc
      721 ctcgccatcg cagagcgcga agacggaaat ctcctcgccc accatgcatt cctcgatgac
      781 aaccaggctt cccgccgcgc catgcacctt gtcctccatg atggcggtaa cggcgtcatg
      841 cgcctcttcc ggcgtggcgg cgacaaccac gcccttgccg gcggccagcc catccgcctt
      901 gatgacgatg ggcgcgccca ccgcctcgat ataatcatgc gcctcctcgg catgggcgaa
      961 actggcccag gcggcggtgg ggatgccggc gccgtcggca acttccttgg tgaatttctt
     1021 gctcccctcc aattgcgcgg cggcagcact gggcccacag caagcgatgc ccaccgccgc
     1081 aagcgcatcc gcgatgcccg ccactagagg cgcctcgggg cccggcacca cgaggtcgat
     1141 tttctggtcc ttggcaaagg caacgaggcc gggaatgtca ttggtgcgca gcggcacatt
     1201 ctccgccacc tcagccgtac cgggattgcc gggggcaaca aaaagcttcg tcagcaaggg
     1261 gctctgcgcg atggcccatg ccagcgcatg ctcgcggccg ccggaaccga tgatgagaac
     1321 gcgcataaga ccccctttgt ggaacgcggc gcgctgtacc atactcggcc gccatgagtg
     1381 aaatcggcca gaacacccct gaatattccg tctccgagct ggcgggcgcg gtcaagcgca
     1441 cgctggaggg cgccttcggc cgcgtccggg tgcgcggcga gatcactgag ttcaaggcct
     1501 atggctccgg ccaccaatat tttgccctga aggatgaggg cgcgaaaatc cgcgccatca
     1561 tctggaaagg ggtggtcccc cgcgtcgggc tcaaggcgga aaacggcgtg gaggtgatcg
     1621 ccaccggccg cctcacctcc tatccggaac gctccgagta ccagctcatc gtcgaacgcc
     1681 tggaatatgc cggcgccggc gcgctgctgg cgcgcatcga ggcgctgcgg ataaaattgc
     1741 aggcggaagg gctgttcgag cgccgccgcg ccctgccgat gctcccgaaa atcatcggcg
     1801 tggtgacctc cgcccagggc gcggtgctgc aggacatcaa gaccaccatc gcgcgccgct
     1861 tcccgcgccc gatcctgctc tggccggtgc cggtgcaggg cgagggtgcc gccgagcgca
     1921 tcgccgccgc catcgagggc ttcaacaatt tgcccccgga cctgccgcaa ccggatgtgc
     1981 ttatcgtcgc gcgcggcggc ggcagcctgg aagaccttat ggccttcaac gacgaggccg
     2041 tggtgcgtgc agcggctcag agcaaaatcc cgctcatctc cgccgtcggt cacgaaacgg
     2101 acaccaccct catcgatttc gccgccgacc gccgcgcccc caccccgacc gccgccgccg
     2161 aaatggccat ccccgcccgc gccgagcttt tggccgacct cgcccagcgc gcggcgcggc
     2221 tggagggagc gcaagcgcgg ctgctgcatc tggcccgcgc cggactggag cgggccgggg
     2281 caaaactgcc cgacctgccc accatgctcg gcgccgcccg ccagcgcctg gacgaccgcg
     2341 ccgaacgcct ggccctgtcg ctgcccaatt ttctatccgc caagcgcggg cgagtggagc
     2401 gtctggcgct ccgccacacg cgcgagatca tttcttcgct ccgcagccgc gtcgccgtgc
     2461 aggcgcaacg gctgctggtg gccctgccca atttcttgcg cgccgacggc aaaaggctgg
     2521 atgccgccag ctaccgcctc acccatccgg gcacggaaat cgccctccgg cgcggccggg
     2581 tggaagcgct ggcccagcgc ctgtccgcgc ccctgtccag ccagctcagc gccgcgcggc
     2641 tgcggctgga ctcggtctcc gcccggctgg agagtgtgag ctatgagcgc gtgctgacgc
     2701 gcggtttcgc gttggtgaca acagccaagg gcacgcccgt aacggcggcg gcaaaagtga
     2761 caccaggcag cgcgctaaaa ctgcgttttg ccgatggcga agtggcggtg aaagcggaga
     2821 agccgaccaa acaacttgat ctcgggttct gactcctcgt tgcgttcagt aaaaggtttc
     2881 agcccccatc tcccgtaaac cccgccgccg caatccccgc cagcgccgct gcctcgtcat
     2941 tatccgacgt ctcacctgaa atccccaccg cgccgatgat gtcgctcccg gatttgatca
     3001 gcaccccgcc cggcaccggc accagcgcgc cgcctatggc cgatgtggcg gcggcgatga
     3061 aataaggctg ttgctcggcc cgcttcatca aagcacgcga gcccatgccc agcccgagcg
     3121 cgccctgtgc cttcgccagt gccacctctc cccgtttcaa cgacgtcccg tcctgcgcca
     3181 cgaacgcctt caacgccccg cgcgcatcga gcacgccgat ggccagcggc ttgaattttt
     3241 gcgccgccgc gaaaagcacg gcctggttga ggatactctg cgcgtcgtcg agggtcaggg
     3301 tcatgaagtc cgcctccaat gcgtgatgcg gatatctgac cagatcgtac caggcctttc
     3361 aagaaaatat gtcccccgga caccgggctt gacggcgctc agcgcccgtc ctgacatatc
     3421 cgcaaaccag aaaggagacg gccatgtaca gggtaatgtt cctcctcaag cgcaaaccgc
     3481 atctgaccca cgagcagttc cgcacccatt tcgagcgctc ccatgcgccg atggcgctga
     3541 aattctgcgg ctatctcttc agtcagtatc agcgccatta taccgatacc gtctattgcg
     3601 gtggcgactc ccggaagccg gatagcggtt acggcgctaa accgtggaac tgggacctgc
     3661 tctcggtctg gaccctgcca tcggaagaga atttcaacga ggtgatccgt atcatgcagt
     3721 cgccggaggt cgcacatttg ttcgaggagg atgaggaccg ctttatcgac cgcgaggcaa
     3781 ccgtgatgat cccctgcagc gtcgaggata tgggcatcct gttcaatcca aagggcaccg
     3841 tgttcgacac gcccacgggc gtcccctcat gggattgaat gtctatccgc gcgcatgacg
     3901 attatgccgc gaatagcgaa acctgacagg ccaccctagg cgatgaattt cgcgtgcggc
     3961 cccagcgcca tttgcggcag ggcgacggcg ggacccacca catagcggca ggaggtcagc
     4021 ccccaatctc ggagcaggcg gttgttgacc atggaaacgg caagcggcaa gccggtctgc
     4081 ttggcgcgct ggctgaataa ttttaaaggc gctatgtccg gcatggcgtc aggcaccgtc
     4141 tcgggcagtt tcagcgcgac gagctggccg ctgatttgtt tcaacacgtc aaacttatta
     4201 tagctcgacg gcaccaccag catcgtatgc aggcaatgcg gaaggatggg cttctgcagt
     4261 tcggcaatct gcaccgctcg catatccggt ggcacggcgt gcaattcgat gatcagacgt
     4321 tcgcggattt tcttcgggat tttctccata tagcgtaaat agcgcgtcat gaccgtcagc
     4381 gcttcaagtg tgcacaaatg cagaggcagc aacagtaatt tcggctgttc caacgtgtcg
     4441 tacccatcca accgctccac caaatcggca atggcggaca gatcgagcgc ctcgtaatac
     4501 ttatttagct ccccctcccg catggccgct tcggcttccg gcagaacggc accagtctcg
     4561 tcacggtcga cgcggaccga atggatcggg aatttgcgct tttgcacgtc ccaggccggc
     4621 cagaatatga gcctggtcca tggcagaata tctggatttt tccgccgcgc ctgggcggca
     4681 agcgttgccg catccggcgg agcctctccc gcctctaccg ggttggcgtc aaacaagacg
     4741 gtccggatgt ggaatttcgc cccggcctca tcatctgcca aggcgcggca tatctccttg
     4801 gcgatggcct gacatttggc ggcgcaagac tcgcggctca gccctggcgc gataaggatg
     4861 aagtccagtt ccccggcttt cttgtacact gccttgtcgc cgatattctg ctcgatcagc
     4921 gcgcgtgtga cggtctcgat cgtcgaagag acatccggcc agtcctcgcc gaactgcacc
     4981 gccagttttg gcgcgttgat ataatgcagc cgggcgcagg gcgtgcccgc tgggatggag
     5041 ccaaatatat ccgcgacccg ccgcgccaga agctcgtcga tctccgtctc ttcctggtgc
     5101 tcttcggaca ctgccgcctg caaattcagc ggcgcgcgcg cggcacgcaa cgccgccatc
     5161 agccgttccg gctgcagcgg cttggtaaga atctgattca tcccggcaat cctgcaggcc
     5221 gccgccatgg ccggtgaacc actgttaagc ccgataatca tcatctgctc gccgacatta
     5281 tgcagcccgc gaatttcgat cgtcgccgtc agcccgtcga caatcggcgc atcgatatcc
     5341 ataaggatga cgtccggcgg gctcgagcgc acagcctcga ccacggcgcg cccatcctcg
     5401 acgaccatgg gttcgaaatc catgtctttg caaaaatcgc ggatcagcag gacgttggca
     5461 ctgttatctt cagcaatgag gacgcgaggc atgcgctctc aatagcagaa gggaaattgc
     5521 taatttatta agtggagaac aggcaaaacg accttttaaa ccggcctgcg tctgccattg
     5581 ccaccagaag caaacgcgct ttacgcgatc ttaggaaggg gtgcgcccta gccttccagt
     5641 tcggtatccc aatacaggaa atcccgccag ctctcatgca ggtaattggg cgggaaatgc
     5701 cggccggttt cctgcagctc atagctggtc gggcggcgcg gctcgatgcg cggaatcatg
     5761 ccgcattcgc gcggcatttt cgatcctttg cgcaaattac agggaccgca ggccgtcacc
     5821 acattctccc agctggtgcg gccgccgcgg gcgcgtggaa tcacatggtc gaaggtcagt
     5881 tcctgcgtca cgcgccgcgc gtcacaatat tggcagctga agctgtcgcg caaaaacaca
     5941 ttgaagcggg tgaaggccgg ggtgcgcg
//
LOCUS       DASQCV010000680         1577 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1140574, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000680 DASQCV010000000
VERSION     DASQCV010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1140574"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..576
                     /locus_tag="VEQ16_10675"
     CDS             <1..576
                     /locus_tag="VEQ16_10675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HYP64347.1"
                     /translation="LSALREKAARRLEKAIGTELPPLKLERARFVVERAMLPEQNWGP
                     RGADGIRFLIATNPGETPGALDKIASGGELSRLMLAMKVVLTAGGGVETLIFDEVDSG
                     IGGATAAAVGERLARVAEGVQVLVVTHSPQVAARGAAQLRVAKRVVGERAVTGVDVLD
                     DEARREEIARMLAGEVVTDAARQAAESLLAR"
     gene            573..>1577
                     /gene="ligA"
                     /locus_tag="VEQ16_10680"
     CDS             573..>1577
                     /gene="ligA"
                     /locus_tag="VEQ16_10680"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HYP64348.1"
                     /translation="MSEKEKLNEILARIEAANAAYHEHDEPEISDAEYDALRREAEAI
                     LAAHPEWREGAAALEQVGGKPASGFRKIRHRTPMLSLENVFAAEEFEEFWRSKKRFLG
                     AEGAWEFVAEPKIDGLSISITYEGRKLVRAATRGDGAEGEDVTANILTLHHVPHMLPE
                     DAPDFIEIRGEVYMTKADFLALNASQERQFANPRNAAAGSLRQLDAGITAKRKLSLFA
                     YAQGETSVPVAATHWEYLATLKHWGFTVNPLSKLIAEDKGEAFQAGIGEQRASLPYDI
                     DGVVYKLNDLALQRRLGFVGRAPRWACAWKFPAEKASTTVEDIEIQVGRTGALTPRAR
                     L"
BASE COUNT          292 a          416 c          606 g          263 t
ORIGIN      
        1 ctctccgcat tgcgcgagaa ggcggcacgg cggctggaga aagccatcgg cacggaattg
       61 ccgccgctga agctggagcg ggcccgattc gtggtggagc gcgccatgct gccggagcag
      121 aattgggggc cacgcggggc ggacgggata cggtttttga tcgccaccaa ccccggcgag
      181 acgccggggg cgctggacaa gatcgcctcg ggcggcgagc tatcgcgttt gatgctggcc
      241 atgaaagtgg tgttgaccgc cggcggcggc gtagaaacgc tgattttcga tgaggtggat
      301 agcggcatag gcggcgccac cgcggcggcg gtgggcgagc gcctggcccg cgtggcggaa
      361 ggcgtgcagg tgctggtggt gacgcatagc ccgcaagtgg cggcgcgggg ggcagcgcaa
      421 ttgcgcgtgg ccaagcgcgt ggtgggcgag cgcgccgtga cgggcgtgga cgtgctggat
      481 gacgaggcgc ggcgggaaga aatcgcgcgc atgctggccg gcgaggtggt gacggatgcc
      541 gcgcggcaag cggctgagag tttgctggcg agatgagcga aaaagagaaa ttgaacgaga
      601 ttctcgcgcg catcgaggcg gccaatgcgg cgtatcatga gcacgacgag ccggagattt
      661 ccgacgccga atatgacgcg ctgcgccgtg aggccgaggc gattctcgcc gcgcatccgg
      721 aatggcgcga gggggcggcg gcgctggagc aggtgggggg gaagccggct tcggggttta
      781 gaaagatacg gcaccgcacg ccgatgctgt cgctggagaa tgtttttgcg gccgaggaat
      841 tcgaggaatt ctggcggagc aagaaacggt ttctgggggc cgaaggagcg tgggaattcg
      901 tcgccgagcc gaagatcgat gggctgtcca tctcgatcac ctatgaaggg cgtaagctgg
      961 tgcgcgcggc gacgcgtggg gatggcgccg agggcgagga tgtgaccgcg aacattctca
     1021 ccttgcatca tgtgccgcac atgctgccgg aggatgcacc ggatttcatc gaaatccgtg
     1081 gcgaggttta tatgaccaag gcggattttc tggcgttgaa tgccagccag gagcggcaat
     1141 tcgccaatcc gcgcaatgcg gcggcaggga gtttgcgcca gctcgatgcc ggcatcacgg
     1201 caaagcggaa actctcgctt tttgcctatg cgcaaggtga aacgtccgtg cccgtggcgg
     1261 cgacgcattg ggagtatctg gcgacgctga aacactgggg ctttacggtg aatccgctct
     1321 ccaagctgat tgccgaggat aagggcgagg ccttccaggc cggcatcggt gagcagcgcg
     1381 cttcgttgcc ctatgacatc gatggggtgg tgtacaagct caatgatctg gcgctgcagc
     1441 gccggctggg gtttgtcggc cgcgcgccgc gctgggcctg cgcgtggaaa ttccctgcgg
     1501 aaaaagccag caccacagtg gaggatattg aaattcaggt ggggcgtacc ggggcactga
     1561 cgccacgcgc ccggctg
//
LOCUS       DASQCV010000681         3158 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1471438, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000681 DASQCV010000000
VERSION     DASQCV010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3158)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3158)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3158
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1471438"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            57..1007
                     /locus_tag="VEQ16_10685"
     CDS             57..1007
                     /locus_tag="VEQ16_10685"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HYP64349.1"
                     /translation="MAEERPRKNVRPFIILALVLAAIAAAFGIYGWHNSFFATTDDAQ
                     IDGNLYTISAQISGRVALVAVQDNEHVKAGQLLVQLDDRDQRVALLKAEAGLAQAKAD
                     LAQDQAQVQESAANVTDAQNDYDRFRTVNPNATTAQQIDAATEAIEAAKAKLASAQAA
                     VQSGQANVAAAGAALADAQLQLSYTQITAPAAGHVAVRTVREGNVVAPGTAMMALVGD
                     DVWVTANYKETQLPGIRIGAPAMVSVDAVPGVTFKAKVDSIQYGTGAVFSLLPAQNAT
                     GNYIKVIQRVPVKLVFTGDSVRNYLLAPGMSVEPAIRVKP"
     gene            1004..2521
                     /locus_tag="VEQ16_10690"
     CDS             1004..2521
                     /locus_tag="VEQ16_10690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HYP64350.1"
                     /translation="MNPALPRSPAGPYNPWAVAVMVALAPLMEVMDTTIANVSLPHIA
                     GSLGVSQSESTWVLTSYLVSNSIVLPISGWLANVLGRKFFFQLCTVLFVGASVLCAVS
                     TSLDMLVVARVLQGLGGGGLAPVAQSMMADSFVEHKRPQVFALFGFTVIVAPATGPVL
                     GGWLTEAFSWHWIFLINLPVGLIAFTLTSIFVSEPLIMRQERAALLKSGGFTLDYAGL
                     ALVAIGFAALQMFLDKFEVDDGFASHFILTSFCIAVVALSFLMLWEWQHPHPVMNVRL
                     LFTRNFGICCFVSFMISFCFLSSTQLLPQMAQTVLGYTSQTSGLSLALGGITTLTFMP
                     IAAFVTGRIIAPRYLMAAGLLQMGVALISDSHFSPYMSFGQLTWARMLQVFAMPFIFV
                     PMGASSFIGINPKLFGDAAALSNQMRNIGGSMGISFATTMLTWRDQFHHARLAESINP
                     YRVLPVNMSLAQLDQQVQFQASFISYLDVFHILGILALVVWPIALLLNHPPQRAR"
     gene            2534..>3158
                     /locus_tag="VEQ16_10695"
     CDS             2534..>3158
                     /locus_tag="VEQ16_10695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HYP64351.1"
                     /translation="MSLANPLAAYRRLALLTTSCAALALSGCMVGPDFVPPHAAVPST
                     FTEDNAVGGTYVSGDSVNPQWWTSFNDPTLTRLEALAVAQNLDLQIATERLLEAEAQA
                     QIEGAVLYPSLSGAASYTREYPSKEGIFGLFGSAAGTSTNAGSLANGSSSATGGGGIS
                     VSTGAIDLYQYGLQAQYDLDLWGKNRRAVEAAIAHARSSEEARRASLL"
BASE COUNT          516 a         1030 c          934 g          678 t
ORIGIN      
        1 cgtgaatccg gcacatgcag gtccggtatg gatgccagga cgataaggag cgcagggtgg
       61 ctgaggagag accgcgtaag aatgtgcggc cgttcattat attggcgctg gtcctagctg
      121 ccatcgccgc cgccttcggc atctatggct ggcataatag ttttttcgcc accactgacg
      181 atgcccagat cgacggcaat ctttacacca tctcggcgca gatcagcggc cgtgtggcgc
      241 ttgtggcagt gcaggacaat gagcatgtca aggctggaca gctcctggtg caactggatg
      301 accgcgacca gcgcgttgcc ctgctgaagg ccgaagccgg cctggctcag gccaaggcgg
      361 atctcgccca ggaccaggcg caggtgcagg agagcgcggc aaatgtgacc gacgcgcaga
      421 atgattatga ccgtttccgc acggtcaatc cgaatgccac cacggcgcag cagatcgacg
      481 cggcgaccga ggccatcgag gcggccaagg ccaagcttgc ctccgcccag gcggccgtgc
      541 agagcggcca ggcgaatgtc gccgctgccg gcgccgcttt ggctgatgcc cagctgcagc
      601 tttcctatac gcagatcacc gcgcccgccg ccggccacgt ggcggtgcgc acggtcaggg
      661 agggcaatgt cgttgccccc ggcacagcca tgatggcttt ggtgggcgac gatgtctggg
      721 ttaccgccaa ttacaaggag acgcagcttc ctggcatccg catcggcgcg ccggccatgg
      781 tcagcgtcga cgcagtgccg ggcgtcacct tcaaggccaa agtggattcc atccagtacg
      841 gcacgggggc ggtcttctcg ctgctgccgg cgcagaatgc gacgggtaac tacatcaagg
      901 tgatccagcg cgtgccggtg aaactcgtct ttaccggcga cagcgtccgg aattacctgc
      961 tcgctccggg catgtcggtc gagcccgcta tccgggtcaa accttgaacc cggcgctgcc
     1021 ccgttcccca gccggtccct ataacccctg ggccgtggcg gtgatggtag cgttggcccc
     1081 gctgatggag gtgatggaca ccaccatcgc caacgtttcg ctgccgcata tcgccggctc
     1141 gctaggggta agccagagcg agagcacctg ggtgctgacg agttatctcg taagcaattc
     1201 catcgttttg cccatctccg gctggctcgc caatgtgctc gggcgcaaat tcttcttcca
     1261 gctctgtacg gtgctgttcg tcggcgcctc cgtgctgtgc gcggtgtcca cttcgctgga
     1321 catgctggtg gtcgcccgtg tgctgcaagg gcttggggga ggggggctgg ccccggtcgc
     1381 gcaatccatg atggcggaca gcttcgtcga gcataagcgt ccgcaagttt ttgctttgtt
     1441 cggtttcacc gtcatcgtcg cgcccgccac cggcccggtg ctgggcggct ggctcaccga
     1501 ggccttctcc tggcactgga tcttcctcat taatctgccg gtcgggctca tcgccttcac
     1561 cctcaccagc atttttgtct ccgagcccct gattatgcgc caggagcgcg ccgcgctgct
     1621 caagagtggc ggtttcacgc tggattatgc cgggctcgct ctggtcgcca tcggcttcgc
     1681 cgccctgcag atgttcctcg ataaattcga ggtggatgac ggtttcgcct cccatttcat
     1741 cctcaccagc ttctgcatcg ccgtggtggc gctctccttt ctcatgctgt gggaatggca
     1801 gcacccgcat ccggtgatga atgtgcgcct gctgtttacg cggaatttcg gcatttgctg
     1861 tttcgtcagc ttcatgatca gcttctgctt cctctcctcc acccagctct tgccgcaaat
     1921 ggcgcagacg gttctgggct atacctcgca gacatccggc ctctctttgg cgctgggcgg
     1981 gatcacgact ctgaccttca tgcccatcgc cgctttcgtc accggccgca tcatcgcgcc
     2041 gcgctatctc atggcggcgg ggctcctcca gatgggcgtt gcgctcatat cagactccca
     2101 tttttcgcct tacatgagct tcgggcaact cacttgggca cgcatgttgc aggtcttcgc
     2161 catgcccttc attttcgtgc cgatgggagc cagctccttc atcggcatca acccaaaatt
     2221 gtttggcgac gccgcggctt tgtccaacca gatgcgcaat attggcggtt ccatgggcat
     2281 ttccttcgcc acgaccatgc tcacctggcg cgaccaattt catcacgcgc gcctcgccga
     2341 aagcatcaat ccgtaccggg ttttgcccgt gaatatgtcc ttggcgcaac tcgaccagca
     2401 ggttcagttc caggccagtt tcatcagcta ccttgacgta tttcatatac ttgggattct
     2461 cgccctcgtg gtttggccca ttgcgttgct tttaaatcat cccccgcagc gggcccgtta
     2521 acggagtttc accgtgtccc ttgccaatcc tctggccgct tatcgccgtc ttgccttgct
     2581 caccacctcc tgcgccgcgc tggccctctc gggctgcatg gtggggccgg atttcgtgcc
     2641 cccgcatgcc gccgtgccaa gtacctttac ggaagacaac gcggtgggcg gtacctatgt
     2701 ctcgggcgat tcggtcaacc cgcaatggtg gaccagcttc aacgacccca cgctgaccag
     2761 gctcgaggca cttgccgtgg cgcagaatct cgatttgcag atcgcgacgg agcgcctgct
     2821 ggaagccgag gcgcaggcgc agattgaggg cgcggtgctc tatcccagcc taagcggcgc
     2881 cgcctcctac acgcgtgaat acccgtccaa ggaaggtatt ttcggcctgt tcggcagtgc
     2941 tgcgggaacc agcaccaatg ccggctcgct cgccaatggc agctccagtg ccacgggcgg
     3001 cggcggtatc agcgtctcca ccggcgccat cgatctctac cagtacgggc tgcaggcgca
     3061 gtatgatctc gatctctggg gcaagaaccg ccgtgccgtc gaggccgcta tcgcccatgc
     3121 ccgctcctcg gaagaagcgc gccgcgcctc gctgctca
//
LOCUS       DASQCV010000682         2789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1966508, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000682 DASQCV010000000
VERSION     DASQCV010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2789
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1966508"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VEQ16_10700"
     CDS             complement(<1..248)
                     /locus_tag="VEQ16_10700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64352.1"
                     /translation="MPSSRQETGKHTTGKLISLEVARFLAALMVTLEHLSNTIPDLGL
                     GHALIATPVSAAVLFFFTLSGFVIHNAHARDAGKPSRLP"
     gene            complement(315..1703)
                     /locus_tag="VEQ16_10705"
     CDS             complement(315..1703)
                     /locus_tag="VEQ16_10705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019644247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY family carbohydrate kinase"
                     /protein_id="HYP64353.1"
                     /translation="MRIAAIDQGTTSTRVLLLEESGARIVHTLRHAQHHRQPGWVEHD
                     GEELLRNVRACLDAAGPVDAIGLANQGESCLAWDAETGAPLSPVIVWQDNRTAAWLED
                     LRDAAPEVMDRAGLPLDAYFSASKFAWILRENPQAGAALAAGRLRLGTTDAFFLDRLT
                     GVFATDVTTASRTSLMNLVTRQWDEELCRIFGVPMQTLPEIRESAGDFGTINNVPVRA
                     ALVDQQAALYGHGCRAKGDAKITFGTGAFALAVTGQQIVRAPEQGLLPTIAWSRGGAA
                     FYAVDGGVYDAGAAVEWGQRIGLYPGFEALQMFEHPPAISRGLVFVPALSGLACPHWD
                     RSGAALFLGMDAGTSKQDMSQALLEGIALRTAEVVAAMAERVPLKPRISVDGGLTRSP
                     YFVQFLADVLERELIVPDFDELTAFGCALMAAGIEVRRPGAERVVQPQDSNAAKWRAR
                     FAEAVQRAKGWR"
     gene            complement(1700..>2789)
                     /locus_tag="VEQ16_10710"
     CDS             complement(1700..>2789)
                     /locus_tag="VEQ16_10710"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP64354.1"
                     /translation="GGVPRHCGHPPFGLREFGRILAGPAYAKRLSAAAEAAGAKILTR
                     HSVVRLNPGGVLDVATPDGMQELRALRVLLATGARETPRSARLIGGDRPLGVLNTGAL
                     QAHIYLQETTPFRRPVVVGTELVSLSALATCRRHGIRPVAMLEAGRRLVARRPFSLFP
                     RLLRIPLHYGAEIEEICGNARVESVRLRDGREIECDGVLLTGKFVPESTLARMGHLAV
                     DSGSNGPVVDQYGRCSDSAYFAAGNVLRGIETAGWSFREGTAIADYIADDLCGGLPGA
                     DNAVEIICGEGLKYAVPQSLARVSKLRGLMQLRVVEPARGQLRVRAGDNVLYRTWVSA
                     LPERRVLLDLEQIRLPQDVSQITVELVP"
BASE COUNT          501 a          907 c          938 g          443 t
ORIGIN      
        1 ggcaggcgcg agggcttacc ggcatcgcgt gcatgggcgt tatggatgac gaagccagag
       61 agggtgaaga agaagagcac cgcggcgctg actggggtgg cgatgagggc gtggccaaga
      121 ccgagatcgg gaatggtgtt ggagagatgt tccagcgtca ccattagggc ggcgagaaag
      181 cgggcaacct ccaggctgat gagcttgccg gtggtgtgtt tgccggtctc ctggcggctg
      241 gatggcaagc ttttgtctcc ctgtgtgtgg cgcgaggcgt catgcgatca atcttccgca
      301 gatgcaaccc gcctctaccg ccagcctttg gcccgctgca ccgcctccgc aaaccgcgcc
      361 cgccattttg ccgcgttgct gtcttgcggc tgcaccacgc gctcggcgcc gggccgccgc
      421 acctcgatgc cagcggccat cagggcgcag ccgaaggcgg tcagctcgtc gaaatcgggc
      481 acgatcaatt cgcgctccag cacatccgcc aggaattgca cgaaataggg gctgcgggtc
      541 agcccgccat cgacggagat gcgtggcttg agcggcacgc gctccgccat ggcggccacc
      601 acttcggcgg tgcgcagcgc gatgccttcc agcaaggcct gtgacatgtc ctgcttcgag
      661 gtgccggcat ccatgccgag gaacaaagct gcccccgagc ggtcccaatg cgggcaggcg
      721 aggccggaga gggcagggac gaagacaagg ccgcgcgata tggctggcgg atgctcgaac
      781 atctgcagcg cctcgaaacc gggatagagc ccgatgcgct ggccccattc cacggcggcg
      841 ccggcgtcat acacgccacc atccaccgca taaaacgccg cgccgccgcg cgaccaggcg
      901 atggtgggga gcaggccttg ttccggggcg cggacgattt gctgtcctgt cactgccagg
      961 gcgaaggcgc cagtgccgaa ggtgatcttg gcgtcaccct tggcgcggca gccatggcca
     1021 tataaggccg cctgctggtc caccaaagcg gcacgcacgg gcacattatt gatggtgccg
     1081 aaatcgccgg cggactctcg gatttcgggg agggtctgca taggcacgcc gaaaatccgg
     1141 cataattcct cgtcccattg gcgggtgacg agattcatca gggaggtgcg tgaggcggtg
     1201 gtcacgtcgg tcgcgaacac ccccgtcagc cggtcgagga agaacgcatc ggtggtacca
     1261 aggcgtagcc tgcctgccgc cagggccgcg ccggcttgcg ggttttcacg cagaatccag
     1321 gcgaatttcg aggcggaaaa ataggcgtcc agcggcaggc cggcgcggtc cattacctcg
     1381 ggggcggcat cgcgcagatc ttcgagccag gcggcggtgc ggttatcctg ccagacaatc
     1441 acgggggaga gcggcgcgcc cgtttccgcg tcccaggcca agcagctctc gccctggttg
     1501 gcgaggccga tggcgtccac cggccccgcc gcatccaggc aggcccgcac attgcgcagt
     1561 aattcttctc cgtcatgctc cacccagccg ggctggcgat gatgctgggc atggcgcagc
     1621 gtgtgcacga tgcgtgcgcc ggactcttca agtagcaata cgcgggtgct ggtggtgcct
     1681 tggtcgatcg ccgcgatcct catggcacca actccacggt aatttgcgaa acatcctgcg
     1741 gcagcctgat ctgttccaga tcgagcagca cgcgccgctc aggcaaagcg gagacccagg
     1801 tgcggtacag aacgttgtcg cccgcgcgca cgcgcaattg cccgcgcgcg ggttctacca
     1861 cgcgcagctg cataagcccg cgcaatttac tcacccgcgc caggctctgc ggcacggcat
     1921 atttgagccc ctcgccgcag atgatttcca ccgcattgtc cgcgccgggt aggccgccgc
     1981 agagatcgtc ggcgatataa tccgcgattg ccgtgccttc gcggaaactc cagccggctg
     2041 tctcgatgcc gcgcagcacg ttgccggcgg cgaaataggc gctgtccgag cagcggccat
     2101 attggtccac cactgggccg ttactgccgg aatccaccgc cagatgcccc atgcgcgcga
     2161 gcgtcgattc aggaacaaat ttaccggtaa gcagcacgcc gtcgcactca atctcgcgcc
     2221 catcgcgcag ccgcacggat tccacccgtg cgttgccgca aatttcctcg atctcggcgc
     2281 cgtaatgcag gggaatacgc aggaggcgcg gaaacaaaga gaaaggacgg cgcgcgacca
     2341 ggcggcgtcc ggcctccagc atcgccacgg ggcggatgcc atggcggcgg caggtggcca
     2401 aagcggaaag cgagaccagc tcggtgccta ccacaaccgg gcggcggaac ggcgttgtct
     2461 cctgcagata gatatgggcc tgcagcgcgc cggtattgag cacgccaagc ggccgatcgc
     2521 cgccgatcag ccgggcggaa cgcggcgtct cgcgcgcgcc ggtggcgagc agcacgcgca
     2581 gggcacgcag ctcctgcatc ccgtccggcg tggccacatc cagcacgccg cctgggttga
     2641 gccgcaccac gctatggcgt gtcaggattt ttgctcctgc cgcttcggcc gcggctgata
     2701 gacgtttggc ataggctggg ccggcgagga tgcggccaaa ttcgcgcagg ccgaaaggcg
     2761 gatggccgca atggcgcggc acgccgccc
//
LOCUS       DASQCV010000683         2124 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_805520, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000683 DASQCV010000000
VERSION     DASQCV010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_805520"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2124
                     /locus_tag="VEQ16_10715"
     CDS             <1..>2124
                     /locus_tag="VEQ16_10715"
                     /inference="COORDINATES: protein motif:HMM:NF026220.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YCF48-related protein"
                     /protein_id="HYP64355.1"
                     /translation="SAELKRNYSDAPLRAICFVDRNEGWAAGDDGVVWHTIDGGNSWD
                     RQKTGVTGSLRAIHFLNPFTGWIVGREELPNGGGSTGVILHTSDGGLKWTRLAINVLP
                     GQHAVKFFDDRTGIVAGEGADAFGSGVFETIDGGRSWRPIPGPRQPGWLTADFTDPRT
                     GATAGAWSSLAILRDSVFGKSDIDTLGGRSILGLRIYGQHAAAVGQGGLLLISRDSAG
                     TRWSYATPKCLSRESLSNCDFNAVCVLGEQIWVTGRPGSIVLHSADYGKTWECFHTGQ
                     NLPLHAIYFTDIKTGWAVGEFGTILGTEDGGRTWRIQQCAGERSAHRAAVVFLHASPE
                     TLPLEALASLGGDEGYLAAAVRVTAADPTAAPLKRAADPQRWAEAVRRAGGAAGECLW
                     QFPLAQYQANLPAKELMAAWDKLHDGHAAEMLLRQLVLSLRIWQPDVVVTDPSGSDDS
                     LVDVAVREAFVRAADPNAFPEQLEQLGLKPCTAKKLYGLAANGVKLPEQVVMDGTLPL
                     RRCGDTPRDIAAEAFGLLLDNPVTMPNSRVFHLRESRLSDAGHHTHLMQGIVLANGGP
                     ARREFPALTETDLAGIEERVKGGQARRNMEALANPNFAALGGAERVIGQLGAMLKSLP
                     VDHAAAGAFALASGYARSGQWDLAREAFILLVDRYPSAPQALDAYRWLARYASSSEAR
                     RRYEMGQFQIVTHADFSITPGKGSE"
BASE COUNT          368 a          679 c          713 g          364 t
ORIGIN      
        1 cagtgccgaa ttaaagagga actattcaga cgcgccgctg cgagcgatct gtttcgtcga
       61 tcgcaacgaa ggttgggcag ccggcgacga cggcgtggtc tggcacacca tcgacggcgg
      121 gaatagttgg gatcggcaga aaacgggcgt caccggctcg ttgcgcgcaa tccactttct
      181 gaaccccttc acgggctgga tcgtgggtcg ggaagagctg cccaatgggg gcgggagcac
      241 cggagtcatt cttcacacga gcgatggcgg cttgaagtgg acccggctgg ccatcaatgt
      301 cctgcctggc cagcacgcgg tgaagttttt cgatgatcgc accggcattg tagcgggcga
      361 aggagccgat gccttcggca gcggcgtgtt cgaaaccatc gatggcgggc gaagctggcg
      421 gccgatcccc ggcccgcggc aacccggctg gttgaccgcg gacttcaccg atccccgaac
      481 cggcgccacg gccggcgcct ggagcagtct ggcgattctg cgcgacagcg tattcggcaa
      541 gtccgacatc gacaccttgg gtggccgcag catcctcggg ctgcgcatct atggccagca
      601 tgccgcggcc gtcggccaag gcggcctgct gctcatcagc cgcgacagcg ccggaacacg
      661 ctggagttac gccacgccca agtgtttgtc gcgcgagtcg ttatcgaact gcgatttcaa
      721 cgccgtttgc gtgctgggcg agcagatctg ggtgaccggc cggccaggtt cgatcgtcct
      781 gcacagcgct gactatggca agacctggga gtgtttccac accggccaga atttgccgct
      841 gcacgcaatt tacttcaccg acatcaagac cggctgggcg gtgggcgaat tcggcacgat
      901 tctcggcacc gaagacggcg ggcgcacctg gcgaattcaa caatgcgccg gcgaacgcag
      961 cgcgcacagg gccgcggttg tcttcctgca tgcgtcgccc gagacactgc cgctggaagc
     1021 gctggcttcg ctcggcggcg atgaaggcta ccttgccgcg gccgttcgcg tgaccgccgc
     1081 ggatcccact gcagcgccgc tgaagcgcgc ggccgatccg cagcgctggg ccgaggctgt
     1141 tcgccgggcg ggcggcgcgg ccggcgagtg tctctggcag ttcccgctgg cgcagtatca
     1201 ggcaaatctg ccggccaagg aactcatggc tgcctgggac aaactacacg acgggcacgc
     1261 ggccgagatg ctgctgcgcc agcttgtgtt gagcctgcgc atctggcaac cggatgttgt
     1321 cgtgaccgat ccatcgggca gtgatgattc gctcgtggac gtggcagtgc gcgaagcctt
     1381 tgtccgcgcg gctgatccga atgcatttcc ggagcagctc gaacagctcg ggctcaagcc
     1441 atgcaccgcc aaaaagctct atggccttgc tgccaacggg gtcaagctgc ccgagcaggt
     1501 ggtgatggat ggcaccctgc cattgcgccg ctgcggcgac acgccgcgcg acatcgcggc
     1561 cgaggcattc ggcctgctgc tagacaaccc ggttacaatg ccgaattcgc gcgtttttca
     1621 cctgcgcgag tcgcgcctgt ccgacgccgg ccatcacacg cacttgatgc agggaattgt
     1681 gttggccaac gggggaccgg cgcgccgtga atttcccgcg ctcacggaga ccgatctcgc
     1741 cggcattgag gagcgcgtaa agggcgggca agcccgacgc aacatggagg cgctggcaaa
     1801 cccgaatttc gcggcgctcg gcggggccga gcgcgtgatc ggtcagcttg gcgccatgct
     1861 caaatcgctc ccggtggatc acgcggcggc cggcgcgttc gcgctagcca gcggttacgc
     1921 ccgatccggt cagtgggacc tggcgcgcga ggcgttcatc ctgctcgtgg atcgctatcc
     1981 ttcggccccg caggcgctcg acgcctaccg ctggctcgcg cgctacgcca gcagcagcga
     2041 ggcgcggcga cgctatgaaa tgggccagtt tcagatcgtc acgcatgccg acttttcgat
     2101 cacgcctggc aagggcagcg aaaa
//
LOCUS       DASQCV010000684         1883 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_477078, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000684 DASQCV010000000
VERSION     DASQCV010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477078"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..345
                     /locus_tag="VEQ16_10720"
     CDS             <1..345
                     /locus_tag="VEQ16_10720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HYP64356.1"
                     /translation="MVDLNDVYMTFFLPTAQAGRVAIGANVRLVLDAFPQFVIPAKVT
                     FVANVAQFTPKTVETADERQKLMFRIRAHIDEALLQKNITQVKTGLPGMAYVQLDPQA
                     HWPSRLQGQLLQ"
     gene            342..>1883
                     /locus_tag="VEQ16_10725"
     CDS             342..>1883
                     /locus_tag="VEQ16_10725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014199210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP64357.1"
                     /translation="MSGVSPAPVVRLEAAGLSYGKTRALDGVTLEIPSGCMVGLIGPD
                     GVGKSSMLSLIAGARAVREGRIEVLGGDIADAQHRERILPRIAYMPQGLGKNLYPTLS
                     VFENIDFFGRLFGQDKAEREMRITGLLRATGLDPFPHRPAGKLSGGMKQKVSLCGALI
                     HDPDLLILDEPTTGVDPLSRRQFWELIDDIRGGRPGMSVMVATAYMEEAERFDWLVAM
                     DAGKILATGTPAELLARTGAPNLDAAFIALLPEERRRGHEVLKIPPRLEMTDATPAIE
                     AEHLTMRFGDFTAVDNVSFRIGRGEIFGFLGSNGCGKTTTMKMLTGLLPASEGIAKLF
                     GREVDPRDIEVRRHIGYMSQAFSLYGELTVRQNLDLHARLFAMAEAKIPGRVAEMAQR
                     FDLEGVMDTLPDSLPLGVRQRLSLAVAMIHAPEILILDEPTSGVDPVARDGFWQILSD
                     LSRQDHVTIFVSTHFMNEADLCDRISLMHAGKVLISAPPTDIVKHYGTATLEEAFIDC
                     LREAIG"
BASE COUNT          325 a          568 c          647 g          343 t
ORIGIN      
        1 atggtcgacc tcaacgatgt gtacatgacc ttcttcctgc ctaccgcgca ggcgggacgg
       61 gtggcgatcg gcgccaatgt ccggctggtg ctggatgcgt tcccgcaatt cgtgatcccg
      121 gcgaaggtca ccttcgtcgc caatgtcgcg caattcacgc ccaagacggt ggaaaccgcc
      181 gatgagcggc agaagctgat gttccgcatc agggcgcata tcgacgaggc attgctgcag
      241 aaaaatatca cccaggtgaa gaccggcctg cccggcatgg cctatgtgca gctcgacccg
      301 caggcgcact ggccctcgcg cctgcagggg caattgctgc aatgagcggg gtgagcccgg
      361 cgccggttgt gagacttgaa gcggcggggc tctcctatgg caagaccagg gcgctggatg
      421 gggtgacgtt ggagataccc tccggctgca tggtcgggct catcggcccg gacggggtgg
      481 gcaaatccag catgctctcg ctcatcgccg gggccagggc ggtacgcgag gggcgcatcg
      541 aagtgctggg cggcgatatt gccgatgccc agcaccggga gcgcatcctt ccgcgcatcg
      601 cctatatgcc gcaagggctg gggaagaatc tgtaccccac gctgtccgtg ttcgagaata
      661 tcgatttctt cgggcgcctg tttggccagg acaaggcgga gcgggagatg cgcattaccg
      721 ggctgctgcg ggccaccggg cttgacccct tcccgcaccg cccggcgggc aagctttcgg
      781 gcgggatgaa gcagaaagtc agcctatgcg gcgcgcttat ccatgacccg gacctgctga
      841 tcctcgacga gccgaccacg ggcgtggacc cgctttcgcg ccggcaattc tgggagctga
      901 tcgacgatat ccgcggcggg cggccgggca tgagcgtgat ggtggccacc gcctatatgg
      961 aggaggcgga gcggttcgac tggctcgtgg ccatggatgc gggcaagatt ctcgccaccg
     1021 gcacgccggc ggaattgctg gcgcggaccg gggcgccgaa tctggatgcg gccttcatcg
     1081 cccttctgcc ggaggaacgg cggcgcgggc atgaggtgct aaagattccg ccgcgcctgg
     1141 agatgacgga tgcgacgccc gccatcgagg ccgaacacct gaccatgcgg ttcggcgatt
     1201 tcaccgcggt ggataatgtg agcttccgta tcgggcgcgg cgagattttc ggctttctcg
     1261 gctccaatgg ctgcggcaag acgacgacga tgaagatgct caccgggctg ctgccggcga
     1321 gcgagggcat cgccaaatta ttcggccgcg aagtggaccc gcgcgacatc gaggtgcggc
     1381 gccatatcgg ctatatgtcg caggccttct cgctgtatgg cgagctgacg gtgcggcaga
     1441 atctcgatct gcatgcacgg ctcttcgcca tggcggaggc gaaaattccc ggccgcgtcg
     1501 cggagatggc gcaacgcttc gaccttgagg gcgtgatgga cacgctgccg gacagtttgc
     1561 cgctcggcgt gcggcagcgg ctttcgctgg ccgtggcgat gatccatgcg ccggaaatcc
     1621 tcatcctgga tgagccgacc tcgggcgtgg acccggtggc gcgggacggg ttctggcaga
     1681 ttttgtccga tctctcgcgc caggaccatg tcaccatctt cgtctccacc catttcatga
     1741 acgaggcgga tttatgcgac cgcatctcgc tgatgcatgc gggcaaggtg ctgatcagcg
     1801 cgccacccac ggatattgtg aagcattatg gcacggcgac gctggaggag gccttcatcg
     1861 attgcctgcg cgaggccatc ggc
//
LOCUS       DASQCV010000685         1618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2134905, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000685 DASQCV010000000
VERSION     DASQCV010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2134905"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VEQ16_10730"
     CDS             <1..375
                     /locus_tag="VEQ16_10730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014240892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP64358.1"
                     /translation="ALGLNTLTTSLMLRRSSVEAQLMLGATRWDAAAPVTRDALRSAL
                     MPTINSMSATGLVSLPGMMTGQILSGVPPVEAVKYQILVMFLIAGGTGFGAVAAVLGG
                     VYRLTDARHRLRLDRLTAAQPI"
     gene            complement(420..956)
                     /locus_tag="VEQ16_10735"
     CDS             complement(420..956)
                     /locus_tag="VEQ16_10735"
                     /inference="COORDINATES: protein motif:HMM:NF014471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HYP64359.1"
                     /translation="MKPPSGLLALTLHLAIVSSISFGGFPTVLPDVRAFVVTMHGWVT
                     DQDFTNIFAMAQAIPGPNMILMMGLIGWKVWGLAGALAASTATFTPPCAIYFSAFRLM
                     DRFHEAHWQRVLRSALIPVTTGLIIASGIVMAQAADVTWGAFAMTGAAAVVMLTTRLN
                     PLWLLAAGGALGGLGLLA"
     gene            complement(985..1515)
                     /locus_tag="VEQ16_10740"
     CDS             complement(985..1515)
                     /locus_tag="VEQ16_10740"
                     /inference="COORDINATES: protein motif:HMM:NF014471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015109 - chromate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015703 - chromate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HYP64360.1"
                     /translation="MKSAVLPLQQPIPAPLGAIAKTFLTVSVFGFGGGIVWARRIAVE
                     QRGWLSDAEFLDIVSLCQFLPGPNIIGIAVCTGTKLRGALGALAAIAGFLVVPWSVGL
                     AFGVLCLRYAQAPLLRHVLGGVSAAAAGLLIATGLRLLLPHRRRPFVIGLAVLTLALW
                     PSAACRYRLSCSRCCR"
BASE COUNT          352 a          496 c          526 g          244 t
ORIGIN      
        1 gccctcgggc ttaacacgct gacgacaagc ctcatgctcc gccgttccag cgtggaggcg
       61 caactcatgc taggcgccac gcgatgggac gccgcggctc cggtaacacg cgatgcgctg
      121 cgcagtgcgc tgatgccgac catcaattcg atgtccgcta ctggtctggt gtctctgccc
      181 gggatgatga cggggcagat cctgagcgga gtacccccgg tagaggcggt caaataccag
      241 atcctggtca tgtttctgat cgcgggtggt accggtttcg gggcggttgc cgcggtcctt
      301 ggcggcgtct accgtctgac cgatgcgcgg caccggcttc gtctcgatcg tttgacggcg
      361 gcgcagccta tttagccgat gccgcatatc acggcgaggc cagaccagga tcaggtgcct
      421 tacgccagaa gaccgaggcc gcccaaggcg ccgccggccg ccagaagcca aagcgggttg
      481 aggcgggtcg tcagcataac aaccgcggcg gcgccggtca ttgcgaaagc cccccatgta
      541 acatcagcgg cctgtgccat tacgatgccg ctcgcaataa tcaaaccggt ggtgacagga
      601 atgagcgcgg accgcagcac gcgttgccag tgcgcttcat gaaagcgatc catcagccga
      661 aaagcggaga aataaattgc gcacggcggg gtgaaggtcg cggtggaggc agcaagcgcg
      721 ccggctagtc cccacacctt ccatccgatg agccccatca tcaggatcat gtttgggcca
      781 gggatcgcct gcgccatggc gaagatgttc gtgaaatcct gatccgtgac ccagccatgc
      841 atggtgacga caaacgcacg cacatcgggc agcacggttg gaaagccgcc gaaactgatc
      901 gaggagacga tcgcgagatg aagcgtcagc gccagaagac cggagggcgg tttcatgatc
      961 ggcgcgccgc gaaaagcgcg atgcttagcg gcaacagcgc gagcaggaca atcggtagcg
     1021 gcaggcggct gaaggccata gggccagagt tagtacagcc aggccaatca cgaatggccg
     1081 gcggcgatgt ggcaggagga gtcgcaaccc ggtcgcgatc agaagaccgg ccgcagcagc
     1141 ggaaaccccg ccgaggacat ggcgaagcag tggcgcttgc gcatagcgaa ggcacagcac
     1201 gccaaacgcc aaacccacgc tccagggcac cacaagaaac cccgcgatcg cggcgagcgc
     1261 ccctagcgcg ccgcgcagtt tcgtgccggt gcagaccgcg atcccaatga tattcggccc
     1321 cggcaggaac tggcacaggc tgacgatatc gaggaattcc gcgtcgctga gccagccccg
     1381 ctgttcaacg gcgatgcgcc gggcccagac gatcccgccg ccaaagccaa aaaccgatac
     1441 cgtcaaaaat gttttggcga tggcgccgag tggcgccggg atgggctgct gcagcgggag
     1501 aacggctgac ttcacttagc agcttgttcg acgcgatggg gagagacttt cgacaactcg
     1561 cgttgggccg gcgccacctc cttgtgtgag aaacgctcat aaagagccgg caggacaa
//
LOCUS       DASQCV010000686         2354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1638865, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000686 DASQCV010000000
VERSION     DASQCV010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1638865"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..971
                     /locus_tag="VEQ16_10745"
     CDS             <1..971
                     /locus_tag="VEQ16_10745"
                     /inference="COORDINATES: protein motif:HMM:NF012903.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HYP64361.1"
                     /translation="VYGTNVNATSAALTLAASAAKITAGSAGKFTTATPLAVTGADGG
                     QANVTVTKAQESAASLATAINNVSGTTGVQAQATTSITLALGTAGAGAGYSFSIQAGK
                     GSGGAASGIGTKQTITASSAAQIVSQINGKSSTSGIVAALNTTSGQITLTQTGGYNIN
                     ITGTSSGSLKTIGGTASTIKSGAGTASAVIQGQVQFQASGAFAVGNAGNIGLSITSSL
                     TSLSSINVATTAGANTAINVVKYALGALNNQGGQLGAVQQALTANVNNLNATTQNLTT
                     ALGVVQDANIPAVSNQLTEAQIQAQSGVAALKSSTQLQQSYLSLLP"
     gene            1031..>2354
                     /gene="fliD"
                     /locus_tag="VEQ16_10750"
     CDS             1031..>2354
                     /gene="fliD"
                     /locus_tag="VEQ16_10750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HYP64362.1"
                     /translation="MTSVSALGSSQISSEIATVEARLQAPVTSLKTQITSEQADISAW
                     GAISGAMSSLSQALSNIKNVSAINSRNVSTSDNTKATATASNSAATGTYNLTSISLAK
                     TQEIYSNLLGSGAATLSGGAGNLVFTSGGKSETISIGSGSLTLNGVAAAINKAGDGVV
                     ASVIGTSAGARLVMTSSATGSAAAFTVSGTGALTQFDYNPSSAHTGEILAQTAANASV
                     TLNGIPITSATNTLGSAIAGVTIALAGSGNAVVSVSSSPTNLSSSVEAVATSLNAAIS
                     TIAKETKYVPASTSSSGSSSSTAQAGPLLGNFSATSLKNELATSVSELVASGVSAGAV
                     GLSVDSAGTVSFNVTSFANEYSQHPTAVQNLVSDLYTKLNGITEGAIGAASGSANGVH
                     TAATTGFISAATTSLNGLVSSIDSQITQIEKQNAAQLKILEQQYTTAES"
BASE COUNT          478 a          872 c          646 g          358 t
ORIGIN      
        1 ccgtatatgg caccaacgtt aacgccacct ccgcggcgct cactttggcg gcctcagcgg
       61 ccaagatcac tgccggttcc gccggcaaat tcaccaccgc cacccctctc gccgtcaccg
      121 gcgccgatgg cggccaagcc aatgtgaccg tcaccaaagc acaggaatcc gccgcctcgc
      181 tggccacggc catcaataac gtgtccggca cgacgggcgt acaggcccag gccaccacga
      241 gcataacgct ggccctcggc acggcgggcg cgggcgcggg ctattcgttt agcatccagg
      301 ccggcaaggg ctcgggcggc gccgcgtctg gcatcggcac caagcagacc atcaccgcct
      361 cctccgcggc gcagatcgtt agccagatca atggcaagtc ctcgaccagc ggcatcgtcg
      421 ccgcgctgaa caccacctcc ggccagatca cgctgacgca gactgggggc tacaacatca
      481 acatcaccgg cacgagctcc ggctcgctga agacgatcgg cggcacggcg agcaccatca
      541 agtccggcgc cggcacggct tcggcggtca tccagggcca ggtgcagttc caggcctctg
      601 gcgccttcgc cgtgggcaat gccggcaata tcggcctgtc catcacgtcc agcctgacct
      661 cgctctcctc catcaacgtc gccaccacgg cgggtgccaa tacggccatc aatgtggtga
      721 aatacgcgct cggcgcgctc aacaaccagg gcggccagct cggcgcggtg cagcaggcgc
      781 tgacggcgaa cgtcaacaac cttaatgcca cgacccagaa cctcaccacc gcgctcggcg
      841 tggtgcagga cgccaacatc cccgcggtca gcaaccagct caccgaggcg cagatccagg
      901 cgcagtccgg tgttgcggcg ctgaaatcct cgacccagct gcagcagagc tatctctcgc
      961 tgctgccgta atctttgcgg tcccaggccg ggctccgccc cggcctgggc caaattagaa
     1021 aggttttgcc atgacaagcg tcagcgccct cggctcatcc caaatctcgt ccgaaatcgc
     1081 cacggttgaa gcacgcttgc aggcccccgt tacgtccctc aaaacgcaga tcaccagcga
     1141 acaggccgat atttccgcct ggggtgccat cagcggtgcc atgtcctcgc tgtcgcaggc
     1201 gctctccaac atcaagaacg tctccgccat caacagccgg aacgtctcca cctccgacaa
     1261 taccaaggcc accgccacgg ccagcaacag cgccgccacc ggcacctata atctcaccag
     1321 catttccctg gcgaaaacac aggagattta ttccaatctg ctcggctccg gcgccgccac
     1381 gctgtcgggc ggggcgggta atctggtctt cacgagcggc ggcaagagcg aaacaatctc
     1441 catcggctcc ggcagtctta ccctcaatgg cgttgccgcc gccatcaaca aggcggggga
     1501 cggagtagta gccagcgtca tcggtacctc ggcgggcgcc aggctggtga tgaccagcag
     1561 cgccacgggc agcgccgccg ccttcaccgt gtccggcacg ggcgcgctca cgcaattcga
     1621 ctataacccc tcttccgcgc atacgggtga aattttggcc cagacagctg ccaacgcctc
     1681 ggtcacgctc aacggcattc ccatcaccag tgccaccaac acgctcggca gcgccatcgc
     1741 cggcgtcacc atcgcactgg ccggttcggg caatgccgtg gtctccgtgt cctcctcgcc
     1801 caccaacctg tccagctcgg tggaggcggt ggccaccagc cttaatgccg ccatctccac
     1861 catcgccaag gaaaccaaat atgtaccggc cagcaccagc agctcgggct ccagctccag
     1921 caccgcccag gccggcccgc ttctgggcaa tttctccgcc acgtcgctga aaaacgagtt
     1981 ggcgacctcc gtcagcgaac tggtcgccag cggcgtctcg gccggggcgg tggggctctc
     2041 cgtcgacagc gccggcacgg tctccttcaa cgtcaccagc ttcgccaatg aatattcaca
     2101 gcaccccacg gcggtgcaga atctggtcag tgatctctac accaagctca atggcatcac
     2161 cgaaggcgcc atcggggcgg ccagcggctc cgccaacggc gtgcataccg cagccaccac
     2221 cggcttcatc agcgccgcca caacctcgct caacgggctc gtcagctcca tcgacagcca
     2281 gatcacgcag atcgagaaac aaaacgccgc acagctgaaa attctcgaac agcaatacac
     2341 aacggcggaa agca
//
LOCUS       DASQCV010000687         2174 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1638878, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000687 DASQCV010000000
VERSION     DASQCV010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2174
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1638878"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VEQ16_10755"
     CDS             complement(<1..232)
                     /locus_tag="VEQ16_10755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011347515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64363.1"
                     /translation="MNDQVNDPPPKPAGRRSVPASYFGIVLGLAGLGNAWRVAHRVWQ
                     LPGAVGEVILAAASLIWLALTAAYIAKWFVARQ"
     gene            340..795
                     /locus_tag="VEQ16_10760"
     CDS             340..795
                     /locus_tag="VEQ16_10760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HYP64364.1"
                     /translation="MSETVTVILRQAQNYHFETEFGGGLPAYATDEPAPLGTGLGPSP
                     TQMLLTAVGSCMSSSFHFAMSKFHEAPGQIVTKAAAAVGRNENNRLRVLSIDVAISFA
                     MPAASIGHMERIAGQFEQFCTVGASVAQGIPIHVTVTDGEGKIVKDGPV"
     gene            872..1951
                     /locus_tag="VEQ16_10765"
     CDS             872..1951
                     /locus_tag="VEQ16_10765"
                     /inference="COORDINATES: protein motif:HMM:NF027890.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HYP64365.1"
                     /translation="MALPRKWKLPHIPPFIWRLGSFLLAAFILVVFITQWNRWEGSAR
                     FQSTNDAYLQANLTPLSAQIAGYVREVPVQDFDHVTAGQLIVLIDEAPYQAALAQARA
                     SAAGARAQLETVRAQHPLLQANLRAAEAVVAATTATLAQSGRDVARQQRLFNGGSSSQ
                     ADLEKIKTVNAQLTAQLAQNRAQADAVARQIDLLSAQEDQARASLAAAEAAVQIAQID
                     LGYTHITAPNDGQISTRQVLPGQFIAPGTQVTTLAGLPLVWVTANYKETQLTNVRVGN
                     KATITVDTFPGRTLRGHVVAISPASGAEFALLPPDNATGNFTKIVQRIAVKIAIDDAD
                     GLEDLLRPGMSVVPSIDTHSQVGQP"
     gene            1948..>2174
                     /locus_tag="VEQ16_10770"
     CDS             1948..>2174
                     /locus_tag="VEQ16_10770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64366.1"
                     /translation="MSEATGNGTDDAPPVSVPPEAPIPWLGLTAVLLGTFISTLTGRL
                     STFGLADIRGAVHAGFDDGAWITTAFTVAQM"
BASE COUNT          400 a          731 c          696 g          347 t
ORIGIN      
        1 cctgccgggc gacgaaccat ttggcgatat aggcggcagt gagggcgagc cagatgaggg
       61 acgcggcggc gaggatcacc tcgcccacgg cgcccggcaa ctgccagacg cgatgcgcca
      121 cgcgccacgc attgccaagc ccggccagcc ccagcacgat gccgaaatag gaggcaggaa
      181 cgctacgccg cccggccggt tttggcggcg gatcattcac ctgatcattc atggaacgtc
      241 cctggcgggt ggtttccttc gcgtggcgga ctcactaaac cagcggacag ggagcgcgca
      301 acgaaattgc gtcctcctga gcatcaggag cgtccatcca tgtcggaaac cgtgaccgtc
      361 attttgcgcc aggcgcagaa ttatcatttt gaaaccgagt tcggcggcgg gctgcccgct
      421 tacgccactg acgaaccggc gccgcttggc acggggctcg gcccctcgcc cacgcagatg
      481 ctactgaccg cggtcggatc ctgcatgtca tcgagcttcc atttcgccat gagcaagttc
      541 catgaggcgc cggggcagat cgtcaccaag gcggcagcgg ccgtcgggcg gaacgagaat
      601 aaccggctgc gtgtcctctc catcgatgtg gccatcagct ttgccatgcc tgctgccagc
      661 atcggccata tggagcgcat tgccgggcag ttcgagcaat tctgcacggt gggcgcctct
      721 gtggcgcaag gcatccccat ccatgtgacc gtcacggacg gcgaagggaa gatcgtgaaa
      781 gacgggccgg tgtaatggaa acggccgccg cttgcaccgc aggccaagcg gcggcagatt
      841 aaccccaagc atgcaacggg gagcctgggg aatggcgttg ccgcgcaaat ggaaattgcc
      901 gcatattccg cctttcatat ggcgcctggg gagtttcctg ctcgccgcct tcatccttgt
      961 cgtcttcatc acacaatgga accgctggga gggttcggcc cgcttccaga gtaccaatga
     1021 cgcctatctg caggccaacc tgacgccgtt gagcgcgcag atcgccggct atgtgcggga
     1081 ggtgccggtg caggattttg accatgtgac agccgggcag ctgatcgtgc tcatcgacga
     1141 ggcgccctac caggccgctt tggcccaggc gcgggccagc gccgcgggcg cgcgggcgca
     1201 gctggaaacc gtgcgggcgc aacacccgct gctgcaggcc aatctgcgcg ccgccgaagc
     1261 agtggtggcc gccaccaccg ccacattggc acagagcggg cgcgacgtgg cgcgccagca
     1321 gcgtctgttc aacggcggct cctcctcgca ggcggatctt gaaaagatca agaccgtgaa
     1381 cgcccagctc accgcgcagc tggcgcagaa ccgcgcccag gccgacgcgg tggcacggca
     1441 aatcgatctt ttgagcgcgc aggaggatca ggcgcgcgcc tcgctggcgg cagcggaagc
     1501 ggcggtgcag atcgcgcaga tcgatctcgg ctatactcac atcaccgcgc ccaatgacgg
     1561 gcagatcagc acgcgtcagg tcttgcccgg ccagttcatc gcccctggca cgcaagtgac
     1621 caccctcgcc ggcctgccgc tggtctgggt caccgccaat tacaaggaaa cgcagctcac
     1681 caatgtgcgg gtcggcaaca aggccaccat cacggtcgac accttccccg gccgcacgct
     1741 gcgcggccat gtggtggcca tctcgccggc ctcgggcgcg gaattcgcgc tgctgccgcc
     1801 ggataatgcg acaggcaact tcaccaaaat cgtgcagcgc atcgcggtga aaatcgccat
     1861 cgacgatgct gacgggctgg aggatttgct gcggccgggc atgtcggtgg tccccagcat
     1921 cgacacgcat tcgcaggtgg ggcagccatg agcgaagcga cggggaacgg cacggacgac
     1981 gcgccgcccg tctccgtgcc accagaggcg cccatcccgt ggctggggct caccgccgta
     2041 ttgctgggca ccttcatctc caccctcacc ggccgcctct ccacctttgg cctcgccgat
     2101 atacgcggcg cggtccatgc cgggttcgac gacggcgcct ggatcaccac cgccttcacc
     2161 gtggcgcaga tgca
//
LOCUS       DASQCV010000688         6287 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2467133, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000688 DASQCV010000000
VERSION     DASQCV010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 6287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6287
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2467133"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1579
                     /gene="infB"
                     /locus_tag="VEQ16_10775"
     CDS             <1..1579
                     /gene="infB"
                     /locus_tag="VEQ16_10775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012224611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HYP64367.1"
                     /translation="RRVADSDVEIGLEGEADTEANLLSRPPVVTIMGHVDHGKTSLLD
                     AMRHANVAAGEAGGITQHIGAYQITTPSGALITFLDTPGHEAFTAMRARGAAATDIVV
                     LVVAADDGVMPQTIEAIKHAQAANVPIIVAINKIDRPGADPNRVRNELLQYEIVVEEM
                     GGETMDVEVSALKKLGLDKLEEAILLQAEVLELRANPNRTAEGAIIESRLDRGRGPVA
                     TVLVQKGTLNQGDIVVAGAQWGRVRAMLDDKGQNVKEALPSAPVEILGLSGAPTAGEP
                     FVVVENEQRAREIVEYRAQKLRDRHAAAQTAGLGTMEERLARIQAGAQKEVALVVKAD
                     VQGSAEAIGVVVGKVGNEEVRVRVIYSGVGQITESDVQLAKASDAIIVGFNVRANVQA
                     RDLAHREGVDIRYFSIIYEVADDVEKLVKGKLAPIHREKFLGYAEIRQVFNITKTGKV
                     AGCYVTEGLVKRGCGVRLLRDNVVIHQGELSQLKRFKDDVKEVARGYECGLSFAGFQD
                     LREGDVVECYETEIVAA"
     gene            1554..1988
                     /gene="rbfA"
                     /locus_tag="VEQ16_10780"
     CDS             1554..1988
                     /gene="rbfA"
                     /locus_tag="VEQ16_10780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007397081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HYP64368.1"
                     /translation="MKPRSSRPDTAGPSQRQLRVGEEIRHILADLLLRTEFHDPVLAR
                     EHITVSEVRMSPDLKHALVFATVLGHKDIAPLLPALKRVAPYLRAQMGPKLGLRVTPE
                     LKFVADAALDEATKINEILHRPEVERDLKHESPPGPETPDRH"
     gene            1989..2942
                     /locus_tag="VEQ16_10785"
     CDS             1989..2942
                     /locus_tag="VEQ16_10785"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HYP64369.1"
                     /translation="MTKLIASPKCAAGLLKAGKLVAFGTETVYGLGADACNGEAVAGI
                     YTAKGRPSFNPLICHFADGETAFRYVTPTPLAEKLAQKFWPGPLTLVLNRAPDCPVSQ
                     LAGAGLPTLAVRVPDHPMALDLLREFGGPVAAPSANRSGRISPTTAAHVLAQLEGRIA
                     AVLDSGPCAVGLESTILDLSGPSPVLLRPGGVSVEQLEAEIGPIARAEAVSHAPVAPG
                     MLLSHYAPRLPVRLNAASVDEDEALLAFGPPLPGSALVFQLSEHKNLREAAARLFEAL
                     HWLDEEGQKLGAAGIAAQPIPAHGLGLAINDRLNRAAAPRD"
     gene            2998..3819
                     /locus_tag="VEQ16_10790"
     CDS             2998..3819
                     /locus_tag="VEQ16_10790"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYP64370.1"
                     /translation="MRFCLALLTLLLLATKASAKDFYFTASDGARLHYTETGPANAPA
                     LVFVPGWTMPGWIFAPQLEAFRAHYRVVLFDPRGQGSSEITGSGYNPERRGQDIAELV
                     ARIPGKVVVVGWSLGVLDTLAWIHEDGTSPKLAGLVLIDNSVGENPPPAPFAGPYRPA
                     PTMAEFVEGMFHTYRSPEYLARLTAACTRLPAPYAQALLRYPVPRSYWKEAILSTDVP
                     VLYVVRPHLEGQAENLQLDRPNTTIAVFPKAGHALFVDEPDRFDELMQQFLNNNV"
     gene            3831..6263
                     /locus_tag="VEQ16_10795"
     CDS             3831..6263
                     /locus_tag="VEQ16_10795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64371.1"
                     /translation="MPLFLVSAAAVGLETALTRYFALANWSDYGYWVISIVMVGFAFA
                     GVTLALAEGFFTRHAKLLLAALPAALTLSAALGYAAVILNPFNPLALQNQATWLPQLR
                     NIGLYYLALLPFFYLTGLFISLCFSAATTRLGKVYAADMLGAAAGTVLVLGLMFLLPA
                     FALTAWLLPLLALAALFTTPYRKGAALAALLALGLGEALLAFGPQAEISQYKPIYPPL
                     HTPSAKILATLHSPRGEYMLLDDFTERVNTDISNDSAMLGYPSPPLSYGLYRDGIRIA
                     SLPRPGAVSNGYAPGALDALPYTLRPQARALLIGTSGGFKADEVLALGAAHVDALETE
                     PMLYRAIRQGFGPAPALAPSPRLRIFDDNPRSAVRSGQHYDVIDIASDALDSAPANVY
                     AFSAQAFAADLDALTPGGVLSVPVSIQDFPAYALRLLATMREAYRLRGIDDAGPYLIL
                     YRSAWNARLLASNQPFSAADIKAAAKWTDDRSFDVSYYQGFDPVAARDNLYNDLPAVS
                     FANGTADENAMDDSIADEAAGILAGQPTVSAQAFDLRPVTDDRPAFYAILRLNQLSLL
                     LARLQILPQAEIGALVNLAVLAQAVVIAALVLLVPLAAPKRERSNFPVPRPALYFSAL
                     AIGYMFLEIFSIERVSLLLNDRATAFSVVLSVLLAFSGLGSFLSGRFAAQPSRAVAGA
                     FALIAAWGAVMMFAAGPACLAGGALPYGLRILLVVLALAPVSLAMGMPFPLGLERVRA
                     QKFFLPWAWGLNGALSVVAPPLANLLLRNIGLHAVLGGAILLYAVAALCFPVPEGKTN
                     WLPVLRRSAAVD"
BASE COUNT          990 a         2215 c         1937 g         1145 t
ORIGIN      
        1 ccgccgcgtg gcggattccg acgttgaaat cggcctggaa ggcgaggcgg atacggaagc
       61 caacctgctg tcgcgtccgc cggttgtcac catcatgggc catgtcgacc acggcaagac
      121 cagcctgctg gacgccatgc gccacgccaa tgtggccgcg ggcgaggccg gcggcatcac
      181 ccagcatatc ggcgcctatc agatcaccac cccctccggc gcgctgatca ccttcctcga
      241 cacgcctggc catgaggcct tcaccgccat gcgcgcccgc ggcgccgccg cgacggacat
      301 cgtggtgctg gtggtcgccg ccgatgacgg cgtgatgccg caaaccatcg aggccatcaa
      361 acacgcccag gccgccaacg tgcccatcat cgtggcgatc aataagatcg accgccccgg
      421 cgccgacccc aaccgcgtcc gcaacgagct gctccagtac gagatcgtgg tggaagagat
      481 gggcggcgag acgatggatg tggaagtctc cgcgctgaag aagctcggcc tggacaagct
      541 ggaagaagcc atcctgctgc aggccgaggt gctggagctg cgcgccaacc ccaaccgcac
      601 ggcggaaggt gccatcatcg aaagccgtct cgaccgtggc cgcggcccgg tggcgaccgt
      661 gctcgtgcag aaaggcacgc tgaaccaggg cgacatcgtg gtggccggcg cccagtgggg
      721 ccgtgtgcgc gccatgctgg acgacaaggg ccagaacgtg aaggaggcgc tgccctccgc
      781 cccggtggaa attctcggcc tctccggcgc gcccacggcg ggcgaaccct tcgtggtcgt
      841 ggagaacgag cagcgcgccc gcgagatcgt ggagtatcgc gctcagaaac tgcgcgaccg
      901 ccacgcggcg gcgcaaaccg caggactcgg caccatggaa gagcggctcg cccgcatcca
      961 ggccggcgcg cagaaggaag tggcgctcgt cgtcaaggcg gacgtgcaag gctcggccga
     1021 ggcaatcggc gtggtggtcg gcaaggtcgg caacgaagag gtgcgcgtgc gcgtcatcta
     1081 ttccggtgtc ggccagatta ccgagagcga cgtgcagctg gcgaaagcct ccgacgccat
     1141 catcgtcggc ttcaatgtcc gcgccaacgt gcaggcgcgc gacctcgccc accgcgaggg
     1201 tgtggatatt cgctatttct cgatcatcta cgaagtcgcg gacgatgtgg agaagctggt
     1261 caagggcaag ctcgccccca tccatcgcga gaaattcctc ggctacgcgg aaatccgcca
     1321 ggtcttcaac atcaccaaga ccggcaaggt cgcgggttgt tacgttaccg aagggctggt
     1381 caagcgcggt tgcggcgtgc gtctgctgcg cgacaatgtc gtcatccatc agggcgagct
     1441 gtcgcagctc aagcgcttca aggatgacgt gaaggaagtg gcgcgcggtt acgaatgcgg
     1501 cctgtccttc gccggcttcc aggatctgcg cgaaggcgac gtggtggagt gctatgaaac
     1561 cgagatcgtc gcggcctgat acggcgggcc cctcgcagcg ccagctgcgg gtgggtgagg
     1621 aaatccgcca catcctggct gatcttctgc tgcgcactga gtttcacgac ccggtgctgg
     1681 cgcgcgagca tatcaccgtg tccgaggtgc gcatgtcgcc ggacctcaag catgcgctcg
     1741 tcttcgccac cgtgctgggg cacaaggaca tcgcgccgct tctgccggcg ctgaagcgcg
     1801 tggcacccta tctgcgcgcg cagatggggc ccaagctggg gttgcgcgtg acgccggagc
     1861 tgaaattcgt tgctgatgcg gcgttggatg aggcgacgaa gatcaacgag attttgcata
     1921 ggcccgaagt cgagagggac cttaagcatg agtctccccc aggtcctgaa accccggacc
     1981 gccattaatt gacgaagctc attgcgagcc caaaatgcgc ggccgggttg ctcaaggcgg
     2041 gcaagctcgt cgcgttcggt accgaaactg tctacggcct cggcgccgat gcctgtaacg
     2101 gcgaggccgt cgccggcatc tacaccgcca agggccgccc cagcttcaac ccgctcatct
     2161 gccatttcgc ggacggtgag accgccttcc gctacgtcac ccccacgccc ctcgccgaaa
     2221 aactggcgca aaaattctgg cctggcccgc tcacgctggt gctcaaccgg gcgccggact
     2281 gccctgtctc gcagttagct ggagcagggc tgccaacgct tgccgtgcgc gtgccagacc
     2341 acccgatggc gctggacttg ctgcgggaat tcggcggccc cgtcgctgcc ccttccgcca
     2401 accgttccgg ccgtatctcc cccacaaccg ccgcccatgt gctggcgcag ctcgaaggcc
     2461 gcatcgccgc ggtgctggat tccggcccct gcgcggtcgg gctggaatcc accatcctcg
     2521 acctctccgg ccccagcccc gtcctgctcc gccccggcgg ggtgagcgtc gaacaactgg
     2581 aagcggaaat cggccccatc gcccgcgccg aagccgtgag ccatgccccc gtcgcgcccg
     2641 gcatgctgct ctcccactat gccccccgcc tgcccgtgcg gctcaacgcc gccagcgtgg
     2701 acgaggacga agcgttgctc gccttcggcc cgcctctgcc gggatcggcc ctggttttcc
     2761 agctctccga gcacaaaaac ctgcgcgagg ccgccgcgcg cctgttcgaa gccttgcact
     2821 ggctcgacga agagggacaa aaacttgggg cagccggtat cgccgcccag cccatcccgg
     2881 cccatgggct aggcctcgcc atcaacgacc ggctcaaccg cgctgccgcg ccccgggatt
     2941 gatgaagggg attaaattaa tttgacaggg cgtcgtccgc ccggcgcaaa ttgccccatg
     3001 cgtttctgcc tcgctctgct gaccttgctg ctgcttgcca ccaaggccag cgcgaaggat
     3061 ttttatttca ctgcctcgga cggcgcgcgg ctgcattaca ccgaaaccgg ccccgccaac
     3121 gcgcccgccc tcgtctttgt gcccggctgg accatgccgg gctggatttt cgcgccgcag
     3181 ctcgaagcct tccgcgccca ttaccgcgtc gtgctgttcg acccgcgcgg ccagggcagc
     3241 tcggaaatca ccggcagcgg ctacaacccg gagcggcgcg gccaggacat tgccgagctg
     3301 gtggccagaa ttccgggcaa ggtggtcgtc gtcggctggt cactcggcgt actggacact
     3361 ctcgcctgga tccatgagga cggcaccagc cccaagctgg ccgggctcgt gctcatcgat
     3421 aattccgtgg gcgagaaccc gccaccggcg cctttcgccg gcccgtaccg tccagccccg
     3481 accatggcgg aattcgtcga gggcatgttc cacacctacc gcagcccgga atatctggcg
     3541 cgcctcaccg ccgcctgcac ccgcctgccc gccccctacg cccaggcctt gctgcgctac
     3601 cccgtgccgc gcagctattg gaaggaggcc atcctctcca ccgacgtgcc agtgctctac
     3661 gtggtgcggc cgcatcttga aggccaggcg gagaatctgc agctcgaccg ccccaacaca
     3721 actattgcgg tatttcccaa agcaggccat gccctgttcg tcgatgagcc ggacaggttt
     3781 gatgagctga tgcagcaatt cctgaacaac aacgtgtagc catgagggcc ttgccgcttt
     3841 tcctggtgtc cgccgccgcg gtcgggctgg aaacggcgct gacgcgctat ttcgccctcg
     3901 cgaactggtc cgactatggc tattgggtca tctccatcgt catggtcggc ttcgccttcg
     3961 ccggcgtcac cttggccctg gccgaggggt tcttcacccg ccacgcgaag ctcttgctgg
     4021 cggcgctgcc ggcggcgctc accttgagcg cggctctggg atatgcggcc gtcatcctca
     4081 acccgttcaa cccgctggcg ctgcagaacc aggccacctg gctgccgcag ctgcgcaata
     4141 tcgggctgta ttacctggct ttgctgccgt ttttctatct caccggcctg ttcatctcgc
     4201 tctgcttcag cgccgccacc acgcggctcg gcaaggtcta tgcggcggac atgctgggtg
     4261 ccgcggcggg cacggtgctg gtgctggggc tgatgttcct gctcccggcc ttcgccctca
     4321 ccgcctggct gctgcctttg ctggcgctgg ccgccttgtt caccacgcct taccgcaagg
     4381 gcgccgcgct ggcggccttg ctggcactgg ggctgggcga ggctttgctc gccttcggcc
     4441 cgcaggccga aatcagccag tacaagccca tctacccgcc cttgcacacg cccagcgcca
     4501 aaatcctcgc cacgctgcac agcccgcgcg gtgaatacat gctgctggat gatttcaccg
     4561 agcgggttaa caccgatatt tccaatgatt ccgccatgct cggctatccc agcccgccgc
     4621 tgagctatgg gctgtaccgg gacggcatcc gcatcgccag cctgccccgg cccggcgcgg
     4681 tgtccaatgg ctatgcgccc ggcgcgctgg acgccctgcc ctacacgctg cgcccgcagg
     4741 cccgcgcttt gctcatcggc acctccggcg gcttcaaggc ggacgaagtt ctcgctttgg
     4801 gcgccgcgca tgtggacgcg ctggagaccg agcccatgct ctaccgcgcc atccgccaag
     4861 gcttcggccc cgcgccggcg ctcgcaccca gcccgcgttt gcgaattttc gatgacaatc
     4921 cgcgcagtgc cgtgcgcagc gggcagcatt acgatgtcat cgacatcgcc tcggacgcgc
     4981 tcgattccgc ccccgccaat gtctatgcct tctcggccca agccttcgcc gccgacctcg
     5041 atgcgctcac cccgggcggc gtgctgtccg tgcccgtctc catccaggat ttccccgcct
     5101 acgcgctgcg cctgctggcg acgatgcgcg aggcctaccg gctgcgcggc atcgacgatg
     5161 ccgggccata tctcatcctc tatcgctcgg cgtggaatgc gcggctcctg gccagcaacc
     5221 agcccttctc cgcggcggac atcaaggcgg ccgccaaatg gaccgacgac cgctccttcg
     5281 atgtctccta ctatcagggt tttgaccccg tggcggcgag ggacaatctt tacaacgact
     5341 tgccggccgt ctccttcgcc aacggcacgg cggacgaaaa tgcgatggat gattccatcg
     5401 ccgacgaggc cgccggcata ttggcgggcc agcccaccgt ctcggcccag gccttcgatc
     5461 tgcgcccggt gacggatgac cgccccgcct tctacgccat tctgcgcctc aaccagctct
     5521 cgctgctgct ggcgcggctg cagatcctgc cgcaggccga gatcggcgca ttggtcaatc
     5581 tcgccgtact ggcccaggcg gtggttatcg ccgccctcgt cctgctggtg ccgctcgcgg
     5641 caccgaagcg cgagcgcagc aactttccgg tcccgcgccc ggcgctttat ttctccgctt
     5701 tggcgatcgg ctacatgttt ctcgaaatct tctcaatcga gcgtgtgagc ctcttactga
     5761 acgaccgtgc cacggctttt tccgtggtgc tttccgtgct tttggccttt tccggcctgg
     5821 gcagttttct ctccggccgc ttcgccgccc agcccagccg tgccgtggcc ggggcttttg
     5881 ctctcatcgc cgcctggggc gcggtgatga tgttcgccgc cggccctgcc tgcctggcgg
     5941 gcggggcgct gccttatggc ctgcgtatcc tcctggttgt gctggctttg gcgccggtca
     6001 gcctcgccat gggaatgcct ttcccactgg ggctggagcg tgtacgggcg cagaaattct
     6061 tcctgccctg ggcctgggga ctgaatggcg cgctctcggt tgtagcgccc cccttggcga
     6121 acttattgct gcgcaatatt gggcttcatg cagttttagg cggtgcaatt ctgctttatg
     6181 ctgtagccgc actttgcttc cccgtgcctg aaggaaaaac aaattggctc cccgttttga
     6241 gacgctcagc cgccgtggat tgattgccgg gctcaccgcc agcgcca
//
LOCUS       DASQCV010000689         1788 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2963059, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000689 DASQCV010000000
VERSION     DASQCV010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1788
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2963059"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            174..1082
                     /locus_tag="VEQ16_10800"
     CDS             174..1082
                     /locus_tag="VEQ16_10800"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HYP64372.1"
                     /translation="MNAVTPPRPVAQTVYRSVFISDTHLGTRGCRAEFLASFLKSMTC
                     ENLYLVGDIIDGWRLKRSWFWDKYHDKVLRRVLKFARNGTNVVYVPGNHDEMLRKYLM
                     LGIEVCGVKIQMEAEHVTADGKRLLVTHGDLFDSVVRHARVLALLGDWAYTAALELNR
                     WFNMVRTRLGYPYWSLSAWLKLQVKEAVKAIDRFETALADDAKARGFDGVVCGHIHHA
                     EMRMVNGVLYLNDGDWVESCTALVEHMDGRLELIDWVARNKLSMLAKPAAKMKPADST
                     AIQTVSAEISALQRSLDPTSALPAGF"
     gene            1138..>1788
                     /locus_tag="VEQ16_10805"
     CDS             1138..>1788
                     /locus_tag="VEQ16_10805"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014246946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP64373.1"
                     /translation="MPQVNGVVRTLRTVADEMRAMGKIVEVVGPDRFRTVPMPSYPEI
                     RLAIFARRKLGKIIEEFRPDALHIATEGPLGMAARSYAKRHNVAFTTAFHTRFAEYLK
                     ARTGIPEFLSYIWLRRFHAAGAAVMVATQSLREELTARGFRNVRPWSRGVDLDSFHPE
                     PREDFPYPRPIFAYVGRVAVEKNLRAFLELDLPGSKLVVGDGPQRKALEKDFPAVHF"
BASE COUNT          339 a          624 c          478 g          347 t
ORIGIN      
        1 attccgcaaa tctccggccc cttacgctta aatttcacgc aaagcaccct aaccgtgacg
       61 ccataatgac gctttcgtga cgcaggcatg acaatcatct ttcgccaaat tccagtgcac
      121 gtcacagaat tttaactttc accggcgcga aacttgagat tattcgatcc gttatgaacg
      181 cagtgacgcc gccccgtccc gtagcccaga ctgtctaccg cagcgttttc atctcggaca
      241 cgcatctggg gacacgcggc tgccgcgccg aattcctcgc cagcttcctc aaatccatga
      301 cctgcgagaa tctctatctc gtcggcgaca ttattgatgg ctggcgcctg aaacgttcct
      361 ggttctggga caaatatcac gacaaggtcc tccgccgcgt gctgaaattc gcccgcaacg
      421 gcaccaacgt tgtctatgta cccggcaatc acgacgaaat gctgcgcaaa tatctcatgc
      481 tcggcatcga ggtatgcggc gtcaaaatcc agatggaggc cgagcacgtc accgccgacg
      541 gcaagcgcct cctcgtcacc catggcgatc tgttcgacag cgtcgtccgc catgcccgcg
      601 tcctcgccct cctgggcgac tgggcctaca ccgccgcgct ggagctgaac cgctggttca
      661 acatggtccg cacccgcctc ggctacccct attggtcgct ctccgcctgg ctcaagctgc
      721 aggtgaagga ggccgtgaag gccatcgacc gtttcgagac cgccctcgcc gacgacgcca
      781 aggcgcgcgg gttcgacggc gtggtctgcg gccatatcca ccatgccgaa atgcgcatgg
      841 tcaacggcgt gctctatctc aacgatggcg actgggtgga aagctgcacc gccctggtcg
      901 agcatatgga tggccgcctc gaactcatcg actgggtggc gcgcaacaag ctctccatgc
      961 tggccaagcc cgccgccaag atgaagccgg cggattccac cgccatccag accgtctccg
     1021 cggaaatctc cgccctgcag cgctcgctag accctaccag tgctttacca gcgggattct
     1081 gagcaactgc ctccctttca tggactaagc cgcatcctca tcgtcacaga tgcctggatg
     1141 ccgcaggtga acggggtcgt ccgcactctg cgcaccgtcg ccgacgaaat gcgcgccatg
     1201 ggcaaaatcg tcgaagtggt ggggcccgac cgtttccgca ccgtgcccat gccgagctac
     1261 ccggaaatcc gcctcgccat attcgcccgc cgcaagcttg gtaaaatcat cgaagagttt
     1321 cgccccgacg cgctgcatat cgccaccgaa ggcccgctcg gcatggcggc gcgctcttac
     1381 gccaagcgcc acaacgtcgc ctttaccacg gcattccaca cgcgcttcgc cgagtacctg
     1441 aaagcccgca ccggcattcc tgagttcctc tcctatatct ggctgcgccg cttccatgcc
     1501 gccggcgctg cggtgatggt cgccacccag tctttgcgcg aggagctgac ggcacgcggc
     1561 ttcaggaatg tccgcccctg gtcgcgcggg gtcgatctgg attcatttca tccagagccg
     1621 cgcgaggatt tcccctatcc gcgccccatc ttcgcctatg tcggccgcgt cgccgtggag
     1681 aaaaacctgc gcgccttcct ggagctggac cttcccggct ccaagctggt ggtgggcgac
     1741 ggcccccagc gcaaggcgct cgaaaaagat ttcccagccg tgcatttc
//
LOCUS       DASQCV010000690         1688 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1307070, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000690 DASQCV010000000
VERSION     DASQCV010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1688
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1307070"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..509)
                     /locus_tag="VEQ16_10810"
     CDS             complement(<1..509)
                     /locus_tag="VEQ16_10810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64374.1"
                     /translation="MLGLLPAPAAAFTEIEVRQDHDGAGPSHIFYLHDSVVAVVDPLD
                     GTISAYADTHGMPVRTTKMPVGFRPWRLVRLPSSVAIISEDGRSRIEVARDQTAWPRD
                     FALSEHHPSDAAYRVVPLVRTSAGISLQPIRGAGALPIRAIGPYYVASARELERFGDG
                     RRYVLWKEY"
     gene            925..>1688
                     /locus_tag="VEQ16_10815"
     CDS             925..>1688
                     /locus_tag="VEQ16_10815"
                     /inference="COORDINATES: protein motif:HMM:NF018597.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extensin family protein"
                     /protein_id="HYP64375.1"
                     /translation="MMRVILRGAFPVPALAIALAGCAGMWFAEREPWRRDAELACLQS
                     GAVKEGPTVTIVKAINGPGVCGADYPLQVAAIGGSARLGFADEVVPPPGGDTPDHPHP
                     ARAQLSSLMQAAPYKAGASISTAGAYPPSDPGGRRAPTPAAVTPAATLACPMVSMLDR
                     FVSDKVQPAALRWFGQRVVEIKQISAYSCRGMNGDPYAGISEHAFGNALDMAAFTFAD
                     GRKITVKDGWHGAPAEQGFLRDIQSAACEMFTTVLAP"
BASE COUNT          285 a          555 c          542 g          306 t
ORIGIN      
        1 aagtattcct tccagagcac gtagcgccgc ccgtcgccaa agcgctcaag ctcgcgcgcg
       61 cttgcgacgt agtagggccc gatggcgcgg atcggcagcg cgcccgctcc ccggattggc
      121 tggagcgaga tgccggcaga ggtgcgcacc agcggcacga cccggtaggc tgcatcgctg
      181 gggtgatgtt cgctcagcgc aaagtcacgc ggccaagccg tttggtcgcg cgccacctcg
      241 atgcgcgagc ggccgtcctc ggaaataatt gcaacgctgc tgggcaggcg taccagacgc
      301 caaggacgaa atccgaccgg cattttggtg gtgcgcaccg gcatgccgtg cgtatccgca
      361 taggcggaga tggtgccgtc cagcggatca accaccgcca ccacactatc gtgcaggtaa
      421 aagatatggc tcggcccagc gccgtcatga tcctggcgca cttcgatctc ggtgaatgcc
      481 gccgcgggtg ccgggagcag ccccagcaaa cacattaacc ccagcgctgc cgatctgatg
      541 ttcatcaaat aaaaccaagc ccgcgcttcc ccgggattga aacgcgttcg cggtgttatt
      601 gttggacgcg tgtcggcggc gggcgccaat gcctcccgcc gaccacgctc gccccccacc
      661 caccccggct gggaaccgcc acgtttggca gcgaatacgc tcaatttgtg acgcactcgg
      721 ggggcggcgt cctgtttggc gaaaacatcc gtctcagctc actgcgctac cacctagccc
      781 ttggccggtt gccgtagctt tgccttgatg ggtagattta acgcgggtgc ggacgcaggc
      841 gaaatgcact gttgcggcgc gtcgtacgga cacgggggta ggcctatatc atctgttaat
      901 aggattgcgc gcattgtgat cggcatgatg cgggtcattt tgcgcggtgc ctttccggtg
      961 ccggccctcg cgattgcgct cgccggctgc gctggcatgt ggttcgccga acgtgaacca
     1021 tggcgccgcg atgccgagct tgcctgccta cagtcgggcg ccgtgaaaga aggtccgacc
     1081 gttaccattg tgaaggcaat caacgggcca ggcgtctgcg gcgctgacta tccgctccag
     1141 gtcgctgcga ttggcgggtc ggcgcggctc ggcttcgccg atgaggtggt gccgccgccg
     1201 ggtggcgaca cgccggatca tccgcatcca gcgcgggctc agctttcctc ccttatgcag
     1261 gccgcgccct acaaggcagg cgcctcaatt tcgacagccg gtgcctatcc gccctccgac
     1321 cctggcggcc ggagagcccc tacgccggca gcagtgacac cggccgccac gcttgcctgt
     1381 ccgatggtgt cgatgctcga tcgcttcgtg agcgataagg tgcagcccgc ggcgctgcga
     1441 tggttcggcc agcgggtggt cgagatcaaa cagatttccg cgtattcctg ccgcggcatg
     1501 aacggcgatc cctacgccgg catttccgag cacgccttcg gcaacgccct cgatatggcg
     1561 gctttcacat tcgccgacgg ccgtaagatc accgtgaagg acggctggca cggcgccccc
     1621 gcggagcagg gcttcctgcg cgacatccaa agcgcggcgt gcgagatgtt taccacggtg
     1681 ctggcgcc
//
LOCUS       DASQCV010000691         3260 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2467579, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000691 DASQCV010000000
VERSION     DASQCV010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3260
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2467579"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..946)
                     /locus_tag="VEQ16_10820"
     CDS             complement(65..946)
                     /locus_tag="VEQ16_10820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64376.1"
                     /translation="MIVRPFTIISGLAFVLSGAMMFVVKHQSQMLDAQLSGVNQATQQ
                     DEQSIRVLQAQWALEADPSRLASLAAQFTGLQPMKPGQLVTMASLGNSLPPPGAKPPG
                     SNPEDPVPVMPQLAAAQPAPAAVPAAATTPAQAVATVAARAPAPVPLTAPTSVQTAAA
                     APVAPPASAQAVPAPVVRTVAAVPALKPAAPAHVASVSEIAPVAPVPHHHVAPGRLAR
                     ESVPVHHVVPPRHEGGSSVYLADVSAPVHAAPVGVSSAVAPMGAPVMSVRAVAAPAPA
                     PIDDGGSMLGMAQGSSQ"
     gene            complement(943..1878)
                     /gene="rsmH"
                     /locus_tag="VEQ16_10825"
     CDS             complement(943..1878)
                     /gene="rsmH"
                     /locus_tag="VEQ16_10825"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HYP64377.1"
                     /translation="MSEFSHISVLRDEAVSMLKPRDGGLYLDGTFGGGGYTKAILDSA
                     NCRVIAIDRDPAAVARAQDFTARYPNRFAICEGRISAVSAMMESRSVTALDGAVFDLG
                     VSSYQIDDPARGFSFRHDGPLNMQMGGSVKNAAQLVNLCPESELADILYEYGEEKAAR
                     KIAKAIVLRRKAQKFETTSDLAGVIRSVVRPDKSGIDPATRSFQALRIAVNEELTDIE
                     AALSQAASLLAPGGRLVVVSFHSLEDRIVKKFFAAACGRAPAASRHDPAGFSKAEKPR
                     FTLLTRGAVAPGEAEMRANPRARSAKLRAMERLAA"
     gene            complement(1875..2321)
                     /locus_tag="VEQ16_10830"
     CDS             complement(1875..2321)
                     /locus_tag="VEQ16_10830"
                     /inference="COORDINATES: protein motif:HMM:NF014439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HYP64378.1"
                     /translation="MKQLFGTHENRLDAKGRVSVPAAFRNAWKDVPEMTIVLRPSLIA
                     GCVEGWPLPNYAKYEEELAAMAETDPNRQGWATKIYSDAVELELDGQGRIMIPDHLVA
                     EAGLAETVCFLGRGTHFHIWAPEAAKAFLEATRALAPKLTFGAPTA"
     gene            complement(2532..2922)
                     /gene="rnpB"
                     /locus_tag="VEQ16_10835"
     ncRNA           complement(2532..2922)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VEQ16_10835"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(2947..>3260)
                     /locus_tag="VEQ16_10840"
     CDS             complement(2947..>3260)
                     /locus_tag="VEQ16_10840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HYP64379.1"
                     /translation="RHPIPARNVVAHSDIAPNRKQDPGELFDWPGLAAAGIGVWTEDF
                     RESRDFWGDLAAIGYDVALPREDVIRAFQRHFLPQNLSGEADSATARRAAALRALVDP
                     D"
BASE COUNT          568 a         1161 c          958 g          573 t
ORIGIN      
        1 ccgccgcgtg caggcgcccc tttgcgcctt tgcggcggct tgtcgcccgg cttcaacgtc
       61 aatgtcactg actgctgcct tgcgccatgc ccagcatcga gccgccatca tcgatcggcg
      121 cgggcgccgg tgccgccacg gcacgcacgg acatcaccgg cgcgcccatg ggcgccacgg
      181 cggacgacac gcccaccgga gcggcatgca ctggcgcgga cacatcggcc agatagaccg
      241 aggagccacc ttcatggcgc ggcggcacaa cgtgatgcac cggcaccgac tcacgggcca
      301 gacgccccgg cgcgacatgg tgatgcggca cgggcgcaac gggcgcgatc tcggagaccg
      361 aggccacatg cgctggcgcg gcaggtttca aggctggcac agcggcgacg gtacgcacca
      421 ccggcgcggg aaccgcttgg gctgatgcag gcggtgccac aggtgcagcg gcagctgtct
      481 gcaccgatgt cggcgcagtg aggggcacag gtgcgggagc gcgcgccgcc accgtggcca
      541 cggcctgggc cggggtcgtg gccgccgccg gcaccgcggc aggtgcaggc tgggccgctg
      601 caagttgcgg catcaccggc accggatctt ccgggttgct acccggcggc ttggcgcccg
      661 gtgggggcag actgttaccc aatgacgcca tcgtcaccag ctgccccggc ttcatcggct
      721 gcagcccggt aaattgggcg gccaatgacg ccaggcgcga cgggtccgcc tccagcgccc
      781 attgcgcctg cagcacgcgg atgctctgct catcctgctg cgtcgcctgg ttcacaccgg
      841 aaagctgcgc atccagcatc tggctctgat gcttgaccac gaacatcatc gcccctgaga
      901 gcacgaaggc gaggccggaa atgatggtga agggacggac gatcatgcgg cgagcctttc
      961 catggcgcgc agcttcgcgc tccgtgcgcg cgggttggcc cgcatctccg cctcgccagg
     1021 cgccaccgcg ccgcgggtga gaagcgtaaa gcgaggcttt tcggccttgc tgaaacctgc
     1081 cgggtcatgg cgcgaggccg ccggcgcccg cccgcaggcg gcggcgaaga atttcttgac
     1141 gatccggtct tccagcgaat ggaagctgac caccaccagc cgcccgcccg gcgccagcaa
     1201 ggacgcggcc tggctcagcg ccgcctcgat atcggtcagc tcctcattca ccgcaatgcg
     1261 cagcgcctgg aaacttctgg ttgccgggtc gatgcccgat ttatccggtc tcacaacact
     1321 ccgtatcacg ccggccagat ccgacgtcgt ctcgaatttc tgcgccttgc gccgcaggac
     1381 gatggctttc gcaatcttcc gcgcggcttt ctcttcgcca tattcatata aaatatcggc
     1441 aagttcggat tcggggcaaa gattaacgag ttgcgccgca ttcttcacac taccgcccat
     1501 ctgcatgttc agcgggccgt catggcggaa cgagaagcca cgcgcaggat catcgatttg
     1561 gtacgaagat acaccaagat cgaacacagc cccatccaga gccgttacgc tccgcgactc
     1621 catcatggcc gaaacagcgc tgatcctacc ttcacaaatc gcgaatcggt tcgggtaacg
     1681 cgcggtaaaa tcctgcgccc gcgccaccgc cgccgggtcg cggtctatgg caatcacgcg
     1741 gcaatttgcc gagtcgagaa tcgccttcgt ataaccgcca ccgccgaacg tgccatcgag
     1801 atacagcccg ccatcgcgcg gtttcagcat ggaaaccgcc tcgtcgcgga gaacggaaat
     1861 atgtgaaaat tcgctcatgc cgtcggcgct ccgaaggtga gcttcggcgc cagtgcacgc
     1921 gtggcctcca ggaacgcctt cgcggcttcc ggcgcccaga tatgaaaatg cgtgccgcgc
     1981 cccaggaagc acacggtctc ggccagcccc gcctcggcca cgagatggtc cgggatcatg
     2041 atgcgcccct gcccgtccag ctccagctcc accgcgtccg aatagatttt cgtcgcccag
     2101 ccctgccggt ttgggtcggt ctcggccatg gcggccagct cttcctcgta tttggcgtaa
     2161 ttgggcagcg gccagccttc cacgcagccg gcaatcagcg aggggcgcag cacgatcgtc
     2221 atctccggca catccttcca cgcattacgg aacgcggccg ggacggacac ccgccccttc
     2281 gcatccagcc tgttctcatg cgtgccaaag agctgcttca tcgtggcgtt ttgctcatgc
     2341 ctttccgtgg tttggcgtcg tttaattccc catttcatgg gaaatcatgg gttttctccc
     2401 cctaccatgt cataacccgc cgcgtcaaag agaatcggcc ccaaaaccgc cccgagtcgc
     2461 cgcgaatctc cctggcgaat cctcacggtt tcgccaccct cgttcacact ttgttcgaag
     2521 tgcagaggca aatatccaga cggcctgtaa gccgggttct gtccacgccc taagacgctg
     2581 gacggccatt cctctgggac ggatgtcacc acccgcctct agcaaccaac ccgggcggca
     2641 agccggaaat cgccctacgc ccatggtttc ccacggcgcc ggccgcccct attcggtttt
     2701 gctcccggtg gggtttgccc tgccctccct gttaccagcg aggcggtgcg ctcttaccgc
     2761 accgtttcac ccttgccctg ggcgaaccca aggcggtttg ttttctgtgg cactgtccct
     2821 ggggtcgccc ccgccggccg ttagccggca ccgtatttcc gtggagcccg gactttcctc
     2881 cagcaggatt ctactcccgc cagcggccgt ccaaccgtct ggattcctgc tccctacccc
     2941 ctggggtcag tccgggtcaa ccagcgcccg caatgccgcc gctcgccgcg cggttgcgga
     3001 atccgcctca ccactcagat tttgcggcaa aaaatgcctc tggaaggcgc ggataacgtc
     3061 ctcgcgcggc aacgccacat cataacctat cgccgcaaga tccccccaaa aatcacggga
     3121 ttcgcgaaaa tcctccgtcc acaccccaat ccccgccgcc gccagcccgg gccagtcgaa
     3181 cagctccccc ggatcctgct tgcggttcgg cgcaatatcc gaatgcgcca ccacattgcg
     3241 cgccggaatg ggatgccggt
//
LOCUS       DASQCV010000692         4169 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_642795, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000692 DASQCV010000000
VERSION     DASQCV010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4169
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_642795"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1401
                     /locus_tag="VEQ16_10845"
     CDS             <1..1401
                     /locus_tag="VEQ16_10845"
                     /inference="COORDINATES: protein motif:HMM:NF012982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008138 - protein
                     tyrosine/serine/threonine phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dual specificity protein phosphatase family
                     protein"
                     /protein_id="HYP64380.1"
                     /translation="APEPELEPETIEPEPLPEPEVTEFEINAAAPEPVLENAESQHEE
                     LAREPEAAMAEPVAVEPEMIAEPEPVLESMDYAADAGPEAESQHEEPDHGPALTTPEP
                     DIIEAIAEPAFEAASGLVSEPEPALEPLHEIVAAEPAGTEPGILEATAKPELSFETVA
                     AEVLEPAAHEAEPIAVAANPEPVLDGEPAPLGEPIEEESVLYDEAEPVEAPVRFAPST
                     SAPLTIEMEHVSFAAPVQDENLDESPFLDELPTINLSANMIQSVPLPPRAAAAQMSAP
                     AADPRRFEDAAVMRHPGQGGPGPRGFVWIETGRLAATPMPGLAAPIEQDLDMLKDAGV
                     TMLITLTEQDFPQNLLVRHGLRNLHFPIADQKAPSTGDTDMLVTQMRDLLGQGEILAV
                     HCLAGLGRTGTILAAYMVREQGLSAQAALNQIRHFNRQFVQTDDQEDFLMEYEVQQEQ
                     IQLRNRATGSGAKLLK"
     gene            complement(1469..1690)
                     /locus_tag="VEQ16_10850"
     CDS             complement(1469..1690)
                     /locus_tag="VEQ16_10850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64381.1"
                     /translation="MARLRNSTGATLSLDNGQSFRVVPGAGRTTATTWLPRDRLEVCR
                     VAGSKFSMTNLSRPRPTTIQALRQNNSTM"
     gene            complement(1801..2523)
                     /locus_tag="VEQ16_10855"
     CDS             complement(1801..2523)
                     /locus_tag="VEQ16_10855"
                     /EC_number="2.3.1.286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019644980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0017136 - NAD-dependent histone
                     deacetylase activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacylase"
                     /protein_id="HYP64382.1"
                     /translation="MRQGNLVILTGAGISAESGISTFRDAGGLWETHRFEDLASPAGF
                     ARDPALVHRFYNLRRAQLREVRPNTAHLALAALERAWGARGDFLLVTQNVDDLHERAG
                     SRQMLHMHGELRKLRCGSCNAVSCWEDEAGTDTSCPACSAAGAMRPDIVWFGEMPYCM
                     ERIGAALAQADIFCAIGTSGLVYPAAGFVSQVGCNGRGCELYEINPQPAGRGIYDHVI
                     AAPATLGVPALLDRLGIKGEMP"
     gene            2743..>4169
                     /locus_tag="VEQ16_10860"
     CDS             2743..>4169
                     /locus_tag="VEQ16_10860"
                     /inference="COORDINATES: protein motif:HMM:NF016513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HYP64383.1"
                     /translation="MPKPDELLFALKTFAGAMVAMYFSLWLGLENPYWSMATAFIVAQ
                     PFAGATRSKALYRFCGTLLGGTAAVALVPNLVNAPVLLSLALALWIGMCLYLALLDRS
                     PRSYTFMLAGYTAGIIGFPAVTAPAHIFNTALTRVEEISIGIACTTMVATIFFPRPIA
                     PVLARRITSWVSPAREWAVAALAGEEESAPAVAARRRLAFEATDAAMMISLLGHDTSH
                     MQSSVRFVTRLRLYVISLMPVLTSIGDRVAQLKRLGGITPELNTLLADVTAWMHQGSP
                     EEPNALLGQISAIEHKVYDWAGLLRASLCVRLEELVRIAHHSRVIRRHVLEGDKAPDN
                     PVIEAEYVAVMAETHDHKLALLSALSAAAALLVLCLFWIETGWPAGAGAAVIATVGCS
                     FFAAQDDPAPAIVQMLRNSIIVIIGVAIYNFIILPRVYSFTELVLVLAPAGIIIGVLV
                     ARPATFGTGMLLGAFGSSQLALENV"
BASE COUNT          735 a         1482 c         1238 g          714 t
ORIGIN      
        1 gcacccgagc ccgagttgga accggaaacc atcgagccgg agcccctgcc ggaacccgaa
       61 gtaaccgaat tcgaaatcaa cgccgccgcg ccggagcccg tccttgagaa cgccgaatct
      121 cagcatgagg agctggcccg cgagcccgaa gccgctatgg ctgaacccgt ggccgttgag
      181 cctgagatga ttgccgagcc ggagccggtt ctggaaagca tggattacgc tgcggacgcc
      241 ggaccggaag cagagtccca gcatgaagaa ccggaccacg ggcccgcact caccacaccg
      301 gagcctgaca tcattgaagc catcgccgaa cccgcgtttg aagcggcgtc cgggttggtc
      361 tccgagcccg aacccgcgct ggaacctttg cacgaaattg tggcagcaga gcctgcgggc
      421 accgagcccg gcatccttga agccacggcc aaacccgagc tctcattcga aacggtagcg
      481 gcggaggtcc tagagcccgc cgcccatgag gcggagccta tcgccgttgc ggcgaaccct
      541 gaaccggttc tggatggcga gcccgcgcct ctgggggagc ccatagaaga ggagtccgtc
      601 ctctatgacg aggccgagcc ggtcgaagcg ccggtgcgtt ttgcgccgtc aacctccgcg
      661 ccgctgacca tcgaaatgga gcacgtctcc ttcgccgcgc ccgtgcagga cgaaaatctg
      721 gacgagtctc ccttcctcga tgagctgccg accatcaatc tcagcgccaa catgatccag
      781 tccgttccgc tgccgccgcg cgcggccgcg gcgcagatgt ccgccccggc ggccgatcca
      841 cggcgcttcg aggatgccgc cgtcatgcgc catcccggcc agggcggccc cggcccgcgc
      901 ggcttcgttt ggatcgagac cgggcgcctc gccgccaccc ccatgcccgg cctcgccgcg
      961 cccatcgagc aggacctgga catgcttaag gatgcgggcg tcacaatgct catcaccctc
     1021 actgagcagg attttccgca gaacctcctg gtcaggcacg gcctgcggaa cctgcatttc
     1081 cccatcgccg accagaaagc tccgtccaca ggcgatacgg atatgctggt cacccagatg
     1141 cgcgacttac tggggcaggg cgagattctg gccgtgcatt gcctggccgg gctggggcgc
     1201 accggcacca tcctggcagc ctatatggtc agggagcagg ggctctccgc ccaggcggcg
     1261 ctcaaccaga tccgccattt caaccggcaa ttcgtgcaga ccgacgacca ggaggatttc
     1321 ctcatggaat acgaggtaca gcaggaacag atccaactcc gcaaccgcgc caccggcagc
     1381 ggcgccaagc tgctcaaata agactcaaat aagaacagga ccaggcaaga acggcaccgg
     1441 gggcctccat gcccccgccc agtccagctt acatcgtgct attattttgc cgtagcgcct
     1501 ggatggtggt cggcctcggc cgggacagat tcgtcatgct gaacttgctc cctgcgacgc
     1561 ggcatacttc gagcctgtcc cgcggcagcc atgtggtggc agtcgtccgc cccgcccccg
     1621 gcaccacccg gaagctctgc ccgttatcca ggctaagagt cgcccccgtg ctgttacgca
     1681 gcctggccat ggaacaatcc gtgcccgctg tctgcggggt tgccggcgca ggcggggtct
     1741 gcgccattgc cacgggcgcg gcccacgccg cgagacagaa cgcagccagc aaagtgtttt
     1801 tcatggcatc tctcccttga tacccagccg gtccagcagc gccggcacgc ccagagtggc
     1861 cggtgcggca atgacatggt cataaatgcc gcgtccggcc ggttgtgggt tgatttcata
     1921 taattcgcag ccgcgcccat tacagcccac ctgcgagaca aaaccggcgg cgggatagac
     1981 caggccggac gtgccgatgg cgcaaaaaat atccgcctgg gccagcgcgg cgccgatcct
     2041 ctccatgcaa tatggcatct cgccaaacca gacgatgtcc ggccgcatgg cccccgccgc
     2101 gctgcaggcg gggcaggatg tgtccgtgcc ggcctcgtcc tcccagcacg acaccgcatt
     2161 acagctaccg cagcgcaatt tgcgcaactc accatgcata tgcagcatct gccggctgcc
     2221 cgcccgttca tgcagatcat ccacattctg cgtcaccagc aggaaatcgc cccgcgcccc
     2281 ccaagcccgc tccagcgccg ccagcgccag atgcgctgtg ttgggccgca cctcgcgcag
     2341 ctgcgcccgg cggaggttat aaaagcgatg caccagcgcc ggatcgcgcg cgaaacccgc
     2401 gggcgaagcc aggtcctcga aacggtgcgt ctcccacagc ccgcccgcat cgcggaaggt
     2461 ggaaatgcct gactcggcgg aaatgcccgc cccggtgaga atgacgagat tgccctgccg
     2521 catgcctgcc tccgggcaaa ccatgcgcca gcgtgacgta cgcggcaaag cgtttcatcc
     2581 tgggacggac caaagtgccg caggctgaac ttatttgtcc cggcaattgc aatccagcgc
     2641 gccacacccg acctatgccc tgacggtcct gccggggcgg acagtcctgg cataccgaaa
     2701 cttgtctggt actctgaccc attatcctgc ttttccatcg ccatgcccaa gccggacgag
     2761 cttctgtttg cgttgaaaac cttcgcgggc gcgatggtgg cgatgtattt ctcgctctgg
     2821 ctcgggctcg agaatcccta ctggtccatg gccacagcct tcatcgtggc acagcctttc
     2881 gctggggcca cacgctcgaa agctctctac cggttctgcg gcacgctgct cggcggcacg
     2941 gcggcggtgg ctctggtgcc caatctggtc aacgccccgg tgctgctcag cctcgccttg
     3001 gcactatgga tcggcatgtg cctctatctg gcgctgctcg accgctcgcc ccgctcctac
     3061 accttcatgc tggcgggcta tacggccggc atcatcggct ttcccgctgt taccgcgccg
     3121 gcacatatct tcaacaccgc cctgacccgg gtggaggaaa tctccatcgg catcgcctgc
     3181 accacaatgg tggccaccat cttcttcccg cgccccatcg ccccggtgct ggcgcggcgc
     3241 atcaccagct gggttagccc ggcacgggaa tgggctgtag ctgccttggc tggcgaggag
     3301 gaaagcgccc cggccgtggc ggcgcggcgg cgcctggctt tcgaggccac cgacgcggcg
     3361 atgatgatct ccctgctcgg gcatgacacc tcgcacatgc aatcctcagt gcgcttcgtc
     3421 actaggctgc gcctctatgt catcagcctg atgccggtgc tcacctccat cggcgaccgc
     3481 gtggcgcagc tgaaacgcct cggcggcatc acgcccgaac tcaacaccct gctcgccgat
     3541 gttaccgcct ggatgcacca gggcagcccc gaggaaccca atgcgctgct cgggcagatc
     3601 agcgccatcg agcacaaggt ctatgactgg gctggcctgc tgcgcgcctc gctctgcgtg
     3661 cggctggagg agctggtgcg catcgcgcat cattcccgcg tcatacgccg ccatgtgctg
     3721 gagggcgaca aggcgccgga taacccggtc atcgaggcgg aatatgtggc ggtgatggcc
     3781 gaaacgcacg accataagct ggccctgctc tccgctctat ccgccgccgc cgcgctgctc
     3841 gtgctctgcc tgttctggat cgagacgggc tggcctgccg gcgccggggc ggccgtcatc
     3901 gccaccgtgg gctgttcctt tttcgccgcg caggacgacc cggccccggc aatcgtgcag
     3961 atgctgcgca actccatcat cgtcatcatc ggcgtcgcca tctataactt catcatcttg
     4021 ccacgcgtct acagcttcac cgaactcgtc ctcgtcctgg ctccggccgg catcatcatc
     4081 ggcgtgctcg tcgcccgccc cgcgacattc ggcaccggca tgctgctggg cgccttcggc
     4141 tcctcccagc tcgcgctgga aaatgtctt
//
LOCUS       DASQCV010000693         2452 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_478542, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000693 DASQCV010000000
VERSION     DASQCV010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2452)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2452)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2452
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478542"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..741)
                     /locus_tag="VEQ16_10865"
     CDS             complement(<1..741)
                     /locus_tag="VEQ16_10865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008890576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HYP64384.1"
                     /translation="MTALSSLIDPSSDAFKTNAAHNEALAATLREIVAKAALGGPASA
                     REKHVARGKLLPRDRVHRLLDPGSPFLEIGALAANGMYGDEAPGAGIICGAGRVSGRE
                     CMIVANDPTVKGGAYFPITVKKHLRAQEIAQENRLPCIYLVDSGGANLPHQAEVFPDR
                     DHFGRIFFNQAQMSALGIAQIACVMGSCTAGGAYVPAMSDESVIVRNQGTIFLAGPPL
                     VKAATGEVISAEELGGAETHGRKSGVVDH"
     gene            complement(1056..1820)
                     /locus_tag="VEQ16_10870"
     CDS             complement(1056..1820)
                     /locus_tag="VEQ16_10870"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012812992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HYP64385.1"
                     /translation="MNMLAEIEAAPLQNLTEEKKAAVEVRGLTREFGTNSVLRGLDLT
                     LRAGEFSVLLGRSGSGKSTLLRTLAGLDPVVEGSVTMPASRAVVFQEPRLLPWKRVWQ
                     NVTLGLKLADARKRAEEALAEVGLGHRLNAWPLTLSGGEAQRAALARALVRAPQLLLL
                     DEPFAALDALTRMRMQSLVAALWQAHQPAVLLVTHDVDEAVLLADRILLLENGRIALD
                     LTVDLPRPRRHDAPGFNTLRARLLDALGVKEDGSAN"
     gene            complement(1823..>2452)
                     /locus_tag="VEQ16_10875"
     CDS             complement(1823..>2452)
                     /locus_tag="VEQ16_10875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007005537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYP64386.1"
                     /translation="VTGQLGPNLLISLQRVAIGLSAGVATGAALGLTASLSRAGEDAI
                     DATVQMARTLPHLALIPLMILWFGIGEMPKVILIALGALFPIYLNLFSAVRGTDRKLI
                     EAASTLGLSRAETIFHVILPSALPSFLVGLRQALGASWISLVVAEQINASSGIGYLVM
                     NARDFLRTDIIFDGLLVYALLGLATDQLVRWLERHLLAWRPSIITAKGI"
BASE COUNT          459 a          792 c          803 g          398 t
ORIGIN      
        1 atggtcgacc acgccggatt tgcggccatg ggtttcggcg ccgcccagct cctcggcgga
       61 aattacttcg cccgtcgccg ccttcaccag aggcgggccg gcgaggaaga tggtgccctg
      121 gttgcgcacg atgacgctct catcggacat ggccgggaca taggcgccgc ccgcggtgca
      181 gctgcccatc acgcaggcga tttgcgcgat gccgagtgcc gacatctgcg cttggttgaa
      241 gaagatgcgg ccgaaatggt cccggtccgg aaacacttcg gcctggtgcg gcaggttggc
      301 gccgccgcta tccaccagat agatgcaggg caggcggttt tcctgcgcaa tctcctgcgc
      361 gcgtagatgt tttttcacag ttatcgggaa ataggcgccg cccttcaccg tcgggtcgtt
      421 ggcgacgatc atgcattcgc ggcccgagac gcgcccggcg ccgcagatga tgccggcgcc
      481 cggcgcctcg tctccataca tgccgttggc ggccagcgcg ccgatttcga ggaacggcga
      541 gccagggtcg agcagccggt gcacgcggtc gcgtggcagc agcttgccgc gtgccacatg
      601 tttttcgcgc gcagaggccg ggccgccgag cgccgccttg gcgacaatct cgcgtaaggt
      661 agcggccaga gcctcgttat gcgcggcatt ggtcttaaac gcgtcgctgg acgggtcgat
      721 gagagaggac aaagccgtca tgcgcggcct cgcatcaggc ggcaaggcac ggcccgccgg
      781 gatttaatga acatttcctc tgaccatcca gctaaatgat tgtgcaagaa caagacgcgt
      841 tttattagaa caataagaaa ggggcaaggc caccctgcgg cggattgtgc agggagatgg
      901 ttgaggccgg gttttgtgct tgtaaagggg cgcttcacct ggacgctgat tcagcctgcc
      961 gccgggcgtg gatggttagg tctggacgca ggaacaggcg cgcgccagtc gaaccaagga
     1021 ataattgttc aattgggttg tgacggcccc tggcgttagt tggcggagcc gtcttccttc
     1081 acgcccagcg catccagcag ccgggcgcgc agcgtgttga accccggcgc gtcatggcgg
     1141 cgcgggcgcg gcagatcgac cgttaggtcc agcgcgatcc gtccgttttc cagcagcaaa
     1201 atccggtccg ccagcagcac ggcctcgtcc acatcatgcg tgacaagcag caccgccggc
     1261 tgatgcgcct gccacaaagc agcgacgagc gattgcatgc gcatccgcgt cagcgcgtcc
     1321 aaagcggcaa atggctcgtc caggagcagc aattgcggcg cccgcaccag ggcacgggcc
     1381 agggcagcgc gctgcgcctc gccgcccgag agggtgagcg gccaggcatt cagcctgtgg
     1441 ccgagcccca cttccgccag agcctcttcc gcacgcttgc gggcatcggc cagcttcagt
     1501 cccaaagtca cattctgcca gacccgcttc catggcagca ggcgcggctc ctggaacacc
     1561 accgcgcgcg aggccggcat ggttacgctg ccctccacca ccgggtccag ccccgccagc
     1621 gtgcgcagca gcgtggattt gcccgagccg gaacgcccca gcaggacgga aaactcgccg
     1681 gcgcgcaagg tgaggtccag cccgcgcaat acggaattgg tgccgaattc gcgcgtcagg
     1741 ccgcgcacct cgacagccgc cttcttctcc tcggtcaggt tttgcaacgg agccgcctcg
     1801 atttccgcca gcatgttcat gctcaaatcc ctttcgcggt gatgatggaa gggcgccagg
     1861 cgagcagatg ccgttccagc cagcgcacca gctggtccgt ggcgaggccg agcagcgcat
     1921 agaccagcag cccgtcgaag atgatgtccg tgcgcagaaa atcgcgcgca ttcatcacca
     1981 gatagccgat gcccgatgag gcattgatct gctccgccac caccaggctg atccaggatg
     2041 cccccagcgc ctggcgcagc ccgaccagga agctgggcag cgccgaaggc aggatgacat
     2101 gaaagatggt ttccgcgcgc gagagaccaa gcgtggaagc cgcctcgatg agcttgcggt
     2161 ccgtgccgcg cacggcggag aacaggttga gatagatcgg gaacaatgcg cccagcgcga
     2221 tgagaataac cttcggcatc tcgccgatgc cgaaccacaa aatcatcagt gggatgagcg
     2281 ccagatgcgg caatgtgcgg gccatctgca ccgtcgcgtc gatggcatcc tcgccggcgc
     2341 gcgacaggct ggcggtgagc ccaagcgcgg cgccggtggc gacacccgcg ctgagcccga
     2401 tggccacgcg ctgcagcgag atgagcaaat taggcccgag ctgcccggtg ac
//
LOCUS       DASQCV010000694         1543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_976133, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000694 DASQCV010000000
VERSION     DASQCV010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_976133"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1382
                     /locus_tag="VEQ16_10880"
     CDS             <1..1382
                     /locus_tag="VEQ16_10880"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HYP64387.1"
                     /translation="TLGKLMLGAFLLAGGVAGDIYGRRRVLVLGALGMVGASLLAANA
                     QTGTMLLAARALDGLASAAIAPMALALIASAFSPTEQARVIGLFLGLSGLGAALGPLG
                     AALMVQAQGWRAGFLLPAVVAALGGLGVFLFASGNGTKTEGRRLDGIGALTCAAGLLG
                     LVFGIIEINQVGLLHPRVFQSLALGVGALLAFVWWERRVRDPLLDVRLFGNRTVSVAV
                     IAGLLAALVIGGAVLPLLYFLRTVQNLGPISAIVRLMPLMVAAAAFAPVAGALTTQIG
                     PRKVVTAGLVLMAAGSGLLSSLTPETPYAQVLLALALLGIGDIAVITPVADVILGAVP
                     RERTGSAAAVNGAAMQIGGALGTAVLSSVLIFVTRAVYYQRLEPSGLSRQEIAAATET
                     LRRSIQKAAESGQAIPQTVQTQFADAYRHAFSVGAGGVFACSALVCLLGAALVWFGLR
                     SPGFRGCRR"
BASE COUNT          233 a          477 c          507 g          326 t
ORIGIN      
        1 tcacccttgg caagttgatg ctcggcgcct tcctgctggc cggcggcgtt gcgggcgaca
       61 tctatggcag gcgccgcgtg ctggtactag gcgccctcgg catggtcggt gcatccttgc
      121 tcgcggcgaa tgcgcagacg ggcaccatgc tcctggcggc gcgtgccctg gatggtctgg
      181 ccagcgccgc catcgcgccc atggccctcg cgttaatcgc cagtgcattc agcccaacag
      241 agcaagcccg ggtcatcggg ctctttctcg ggctgtcggg actcggcgct gctctcgggc
      301 cactcggtgc ggccctgatg gtgcaagcgc agggttggcg agccggcttt ctattgcctg
      361 ctgtggtagc agcgctaggt ggtttagggg tgtttctgtt tgcctccggt aacggcacaa
      421 aaactgaagg acgacggctg gatggtatcg gcgcgctcac ctgtgctgct ggcctcctcg
      481 ggttggtgtt cgggatcatt gagattaacc aggtcggcct gctgcatccg cgggtattcc
      541 aatccctcgc ccttggcgtc ggcgccttgc ttgccttcgt ctggtgggaa cggcgggtca
      601 gggatccgct actggacgtc aggctctttg gtaatcgcac tgtctcggtg gccgtcatcg
      661 ctggattgtt ggcggcactg gtcatcggcg gcgccgtttt gccgttgctc tatttcctgc
      721 gaaccgtgca aaaccttggc ccgatctcag cgattgtgcg gcttatgccg ctgatggttg
      781 ctgccgcggc gttcgcgccc gtggcggggg cattaacgac tcaaatcgga ccgagaaagg
      841 tcgttacggc tgggctggtg cttatggccg ccggtagcgg cttgctcagt tcgctgaccc
      901 cggaaacgcc ttacgcgcaa gtgctgctgg cgctggcact gttaggcatc ggcgacatcg
      961 ccgtcatcac gcccgttgcc gacgtcatcc ttggcgcggt gccgagggag cggacgggca
     1021 gtgccgcagc ggtcaacgga gccgccatgc aaatcggcgg agccctggga acggcggtgc
     1081 tcagcagcgt acttatattt gtcacgcgcg cggtatatta ccagcggctg gagccgagcg
     1141 gcctgtcgcg gcaggagatc gccgccgcga cagaaacctt gcgccgatcc atccagaaag
     1201 cggcagagag cggccaagcc atccctcaga cggtacaaac ccaatttgcc gatgcctacc
     1261 gccacgcgtt ctcggtaggc gccggagggg tgttcgcctg ctccgcgctt gtttgcctcc
     1321 tcggtgcggc gctcgtttgg ttcggcttaa ggtcgccagg atttcggggt tgtcgccgct
     1381 gacaatgttg gtcataaaat ttcagattag tttcaccacc tcttgcggaa ctctcaggcg
     1441 agccctgatc gtcccgaagc atgaggaact cgcccccaca aaggaggcat tgcccgccag
     1501 cgcatgaacc cgcctgccgc cagcgacgag gtgccgccga gag
//
LOCUS       DASQCV010000695         3246 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_309056, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000695 DASQCV010000000
VERSION     DASQCV010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3246
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309056"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(72..899)
                     /locus_tag="VEQ16_10885"
     CDS             complement(72..899)
                     /locus_tag="VEQ16_10885"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025082.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HYP64388.1"
                     /translation="MSRPFRAVIGMMQRDEDTRLEAWILYHANLFGFDALYIFDNGSV
                     SPATLAVLRKYQARGVHVDGRHSGTAGFHQKGILISQLFQQLEGDPGIRFFIPLDCDE
                     FLVLHDGESNLTATPAAIFGALESLLGNPHLLVTPSAYSNILGRPGHFFPPYQHHKLF
                     FTEGCVRSMSEGFHRAQSRKLNEERETQFALLHFHHRPFADMVNHSRRKLAHFVDVTN
                     PEALAQYQGAGNHVVRYLTMPPEDYGAMFPQESGIHLPWFIPLCKSLNVGEAFFESI"
     gene            complement(900..2225)
                     /locus_tag="VEQ16_10890"
     CDS             complement(900..2225)
                     /locus_tag="VEQ16_10890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/sulfonate/bicarbonate ABC transporter
                     ATP-binding protein"
                     /protein_id="HYP64389.1"
                     /translation="MDQTFTQPLVSIRNCRQAYHKEASADLVVLDDVDLTLHEGEIVA
                     LLGRSGSGKSTLLRIVSGLLKPTAGEVKWRGQDLKGPAEGVAMVFQSFALFPWLTVQE
                     NVELGLEALGVKKDERDERSEDAIDLIGLGGYDTAYPKELSGGMRQRVGLARALVVHP
                     DLLLMDEPFSALDVLTAETLRTDLIDLWMEKKLPLKSILIVTHNIEEAVLMADRILVF
                     SSNPGRVAHELKVPFPHPRNRFDPAFRQMVDDIYGIMTRRAPKEVQAPATAAPTGFAT
                     PLYPVSTNLMAGLLETLSGPPYHGRADLPALAAALQFEVDELLPLGETLQLLGFARLE
                     EGDIFLTDTGRKFVDAETEQRQEIFSEQLRAHVPLVNAIRSVIDQRSNHRAPALRFRD
                     ELEDHMSPEYAEETLRAVITWGRYAEIFEYDEEAQQFSLEEEDEEDEAE"
     gene            complement(2232..>3246)
                     /locus_tag="VEQ16_10895"
     CDS             complement(2232..>3246)
                     /locus_tag="VEQ16_10895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HYP64390.1"
                     /translation="AIFYAILTMLVVIFLYDQLLFRPLVAWSGKFRFETTATLSGPEP
                     WMLKLLRRTALFQEIGDRIGAVLRSIASLRLALPAKYQVDENAEPSKLIDGLWFAVIG
                     LIALYAGWRIIEFVSATLHWRDLGTAVLMGAFTMIRVIVLMAIAALIWVPIGVWIGLR
                     PKATRVAQPIAQFLAAFPANLLFPPFVVVIVALHLTPDIWLTPLMVLGTQWYILFNVI
                     AGAAAFPGDMKEAVANFHIKGVLWWRKVMIPGILPYFITGAITASGGAWNASIVAEVA
                     SWGNDNLTAHGLGAYIAQATNNGDTPRVVLGVVVMSCFVITFNRILWRPLYDYATRRT
                     TLG"
BASE COUNT          648 a          945 c         1077 g          576 t
ORIGIN      
        1 cgtggtgctg tggcgcgcgc tggaggatgt gcccttgcgc ggctgcgctg acataaggga
       61 ggcgctggca ctcagattga ctcgaaaaat gcctcaccaa cattcaggct tttgcagagc
      121 ggtatgaacc agggcagatg gatgccgctc tcttgcggga acatagcgcc gtaatcctcc
      181 ggcggcatcg tcaagtagcg gacgacatgg ttgccagcgc cctgatactg ggccagtgcc
      241 tccggattcg tgacatcgac gaaatgcgcc agtttgcgcc tggaatgatt taccatatcg
      301 gcaaaagggc ggtggtggaa atgcagaagc gcgaattgag tttcgcgctc ctcgttgagc
      361 ttgcgcgact gagctctgtg gaagccttcc gacatgctgc gtacacagcc ttcggtgaag
      421 aacaatttgt gatgctgata cggcgggaag aaatggcccg gccggccgag gatatttgaa
      481 taggcgctgg gtgttaccaa tagatgcggg ttgcccaaca gcgattccag cgcgccgaaa
      541 atagcagcgg gggttgccgt aaggttgctc tccccgtcat gcagcacgag gaactcatcg
      601 cagtcgagcg ggatgaagaa acggattccc ggatcgcctt ccagctgctg gaagagttgc
      661 gagatcagaa tacctttctg gtgaaatccc gccgtgcccg aatgccttcc atcaacatgc
      721 acgccgcgcg cctggtattt tcgcagcacc gccagcgtgg ccggcgagac cgagccgtta
      781 tcgaaaatat acagtgcatc gaagccgaac agattcgcat ggtacaaaat ccacgcttcg
      841 agccgtgtgt cctcatcgcg ctgcatcatg ccgatgacag cgcggaacgg cctgctcacc
      901 tattccgctt catcctcctc atcctcttcc tcaaggctga attgctgcgc ctcctcgtca
      961 tattcgaaga tttcggcgta gcggccccag gtgatgacgg cgcgcagcgt ctcctcggca
     1021 tattcggggg acatatggtc ctccagctcg tcgcggaagc gcaatgccgg cgcgcgatga
     1081 ttggagcgct ggtcgatgac gctgcggatg gcgttcacca gcggcacatg ggcgcgcagc
     1141 tgctctgaga aaatctcctg gcgctgttcg gtttcggcat cgacgaattt gcggccggtg
     1201 tcggtgagga agatgtcgcc ttcctccagc cgcgcgaagc cgagcagctg caatgtttcg
     1261 ccgagcggca gcagctcgtc cacctcgaat tgcagcgcgg cggcgagggc cggaaggtcg
     1321 gcgcggccat ggtaaggcgg gccggagagg gtctccagaa ggccggccat gaggttggtg
     1381 ctgaccggat aaagcggcgt ggcgaagccg gtgggcgcgg cggtggcggg agcctgcacc
     1441 tccttcggcg cgcggcgggt cataatgccg tagatatcgt ccaccatctg gcggaaggcg
     1501 gggtcgaaac ggttgcgcgg atgcgggaag ggcactttca gctcatgcgc cacgcggccg
     1561 ggattggagg agaagacgag gatgcggtcc gccatcagca ccgcttcctc gatgttgtgc
     1621 gtgacaatga ggatggattt gagcggcagc ttcttttcca tccacaaatc gatgaggtcg
     1681 gtgcgcagcg tctccgccgt cagcacgtcg agcgcggaga agggctcgtc catcagcaaa
     1741 agatcgggat gcacgacgag ggcgcgggcc aggccgacgc gctggcgcat gccgccggac
     1801 agctccttcg gataggccgt gtcgtagccg ccgaggccga tgaggtcgat ggcgtcttcc
     1861 gaacgttcat cgcgctcatc cttcttcacg ccgagcgctt ccagccccag ctccacattc
     1921 tcctgcacgg tgagccaggg gaacagcgca aaactctgga acaccatggc cacgccctca
     1981 gccgggcctt tcaggtcctg gccgcgccat ttcacctcgc ccgcggtcgg cttcagcagg
     2041 ccggagacga tgcgcagcag cgtcgatttt ccggagccgg aacggccgag cagggcgacg
     2101 atctcgcctt catgcagtgt cagatcgaca tcgtcgagca cgacgagatc cgcgctggcc
     2161 tccttatggt aggcctggcg gcaattgcgg atggaaacca aaggctgggt gaaggtctgg
     2221 tccatggcga attaccctag cgtggtgcgg cgcgtggcgt agtcatagag cggacgccac
     2281 aggatgcggt tgaaggtgat gacgaagcag gacatcacca ccacgccgag cacaacgcgc
     2341 ggcgtgtcgc cattattggt ggcctgggcg atataggcgc cgagcccgtg ggcggtaaga
     2401 ttgtcattgc cccagcttgc cacctcggcg acgatggagg cattccaggc gccgccggag
     2461 gcggtgatgg cgccggtgat gaaatagggc aggatgccgg ggatcatcac tttccgccac
     2521 cacagcacac ccttgatgtg gaaattcgcc acggcctcct tcatgtcgcc ggggaaggcg
     2581 gcggcgccgg cgatgacgtt gaacaggatg taccactgtg tccccagcac catcagcggc
     2641 gtcaaccaga tgtcgggggt caggtgcaga gcaacgatca ccaccacgaa gggcgggaac
     2701 agcagattag ccgggaaggc agcgaggaat tgcgcgatgg gctgggccac gcgcgtcgct
     2761 ttcgggcgca gcccgatcca cacgccgatc ggcacccaga taagcgcggc gatggccatc
     2821 agcacgatga cgcggatcat ggtgaacgcg cccatcagca ccgccgtgcc gagatcgcgc
     2881 caatgcagcg tggcggaaac gaactcgata atgcgccagc cggcatagag cgcgatgagc
     2941 ccgatgacgg cgaaccagag gccgtcgatg agttttgacg gctcggcatt ctcatcgact
     3001 tgatatttcg caggcagcgc caggcgcagg ctggcgatgc tgcgcagcac cgcgccgatg
     3061 cggtcgccga tttcctggaa caaggccgtg cggcgcagca gcttcagcat ccagggctcg
     3121 gggccggaga gggtcgcggt ggtctcgaaa cggaatttgc cggaccaggc cacgagcggg
     3181 cggaatagca gctggtcata gaggaagatg accacgagca tggtgaggat ggcgtagaag
     3241 atcgca
//
LOCUS       DASQCV010000696         1602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1142827, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000696 DASQCV010000000
VERSION     DASQCV010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1142827"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(550..>1602)
                     /locus_tag="VEQ16_10900"
     CDS             complement(550..>1602)
                     /locus_tag="VEQ16_10900"
                     /inference="COORDINATES: protein motif:HMM:NF044477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HYP64391.1"
                     /translation="GAVRLREIFLKDDPPRPQQLHQMQEYIQQKLAGAVVRLGHGRWD
                     RAIATSATASTVASAIARTPRSQRDAIDRLRISTAQVRRLYEKVSVRNLAARRKITGI
                     GPRRAEIIVPGVAVLLQFLHEFRLPAIYYSRAGVRDGVIADLAARKVGAELARLTREQ
                     RREVESMGRRYGVALDHARKVADIANLLFTAIQPLHQLPPECGKALEAAAYLHDVGHF
                     VSDASHHKHSWYVVSNSDLAGFTERERLLIAGLCRYHRKSLPSPEHGAYQALSAEERR
                     ILMLLIPLLRLADNLDRGREQRINEVHCRLRDGAVVLQVRAQGDIDLEQWAAERTAEA
                     FQLVYDRAISVTKVRD"
BASE COUNT          269 a          512 c          524 g          297 t
ORIGIN      
        1 tgccactcgg ccgatttcgg ctccttgggg aggagttcgc ggccccgggc aaaaaaagct
       61 gagaccaggc cgggcaggcg ccgccgcgca ttcggcgcgg ctcctgccgc ctcgtcccag
      121 ttgaggtgat tcggtttacc catcgcctat aagtccagcc ggtttcgcca tttccgcgag
      181 aagccctggt gcttccacgc tcggatttcc cgctccagcc gacggcacgc ctggcggcgc
      241 tcgtcctgaa ggcttgccac ccatctcgtc cgaggcgata cgccagcctg gcccatgagc
      301 tcgagagtga tatccagatc gcgcaccacg ccggccgatt ccctcagttt accgagccgg
      361 tgacggattc gttttggggc gttgcccgga taaaattggg cgaagacccg caggcagccg
      421 ctcagccgcc ggatcgagac ccgcagatcg tgaatcgatt ccgggtctgc cgattgagcg
      481 gcccgagtta actggtaggc gagacgtcgc agcagaatgg ctgtgtgcag ccgggcgtat
      541 tctcgcatat cagtcgcgga ctttggtcac cgaaatcgcc cggtcgtaga ccaattgaaa
      601 cgcttcggcc gtgcgttcgg ccgcccattg ttcgagatcg atatctccct gggcccggac
      661 ctgcagcact acggcgccat cgcgcagccg gcagtgcact tcgtttatgc gctgctcccg
      721 gccgcggtcc aggttatccg ccagcctcaa caaggggatt aatagcatca gaatgcgtct
      781 ctcttcggcg ctaagggcct ggtaggcccc gtgttccggg ctggggaggg acttccggtg
      841 gtagcggcag agccccgcga tgagcaggcg ctcccgttcc gtgaagccgg ccaggtctga
      901 attggacacg acgtaccagg agtgcttgtg gtggctggcg tcgcttacga agtggccgac
      961 atcgtgcaga taggccgcgg cctcgagcgc tttcccgcac tcgggaggca gctggtgaag
     1021 gggctggatg gcggtgaaca ggaggttggc gatatccgcc accttgcgag catggtccag
     1081 cgccacgccg tagcggcgtc ccatgctttc cacctcgcgg cgctgctccc gcgtcagccg
     1141 ggccagttcg gcgccgacct tacgggcggc cagatccgcg ataaccccgt cgcggactcc
     1201 ggcccgcgag taatagatgg cgggaagccg gaattcgtgc aagaactgga gcagcacggc
     1261 gacgccggga acgatgattt cggcgcgtcg cggcccgatc ccggtgatct tccgccgcgc
     1321 cgccagatta cgaaccgata ccttttcgta gagccggcga acctgggccg tggaaatgcg
     1381 caaccggtcg atggcatccc gttgcgaacg cggagtccgg gctatggcgc tggccaccgt
     1441 ggatgcggtg gcggaggtgg cgatcgcgcg gtcccatctt ccgtgaccga gccgaacgac
     1501 agcgcccgcc aacttttgtt ggatgtactc ctgcatctga tgcagttgct ggggccgagg
     1561 gggatcgtct ttcaaaaaga tctcgcgcag cctcacggcg cc
//
LOCUS       DASQCV010000697         1566 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_976527, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000697 DASQCV010000000
VERSION     DASQCV010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_976527"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..335
                     /locus_tag="VEQ16_10905"
     CDS             <1..335
                     /locus_tag="VEQ16_10905"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HYP64392.1"
                     /translation="CDVDYTREMAIIAKHEDGRTMGVARLVRNDTDGRSAEFAVLVEP
                     AAKGLGLGTVLMHAIIEWGRAKGVEEIAGQILSDNAPMLAFIRRLGFTLCRLADEPEI
                     LEAKLPLT"
     gene            complement(394..1152)
                     /locus_tag="VEQ16_10910"
     CDS             complement(394..1152)
                     /locus_tag="VEQ16_10910"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP64393.1"
                     /translation="MMQSTPFDLTGKTALVTGGGRGIGAGIARVLANAGANVVIADID
                     LASAQSQAAALHEGCGAARIDLADENSIAQGCAETIARFGVPWLLVNNAALLDRELLL
                     DATSDQWDRTLAVNARGPYLMSRDIARAMVAQGGGGRIVNIASASIFGSITFGHAAYA
                     SSKAALLGLTRASALELASHGITVNLVLPGGVATQGAINARGPAPQGPACRPPPLGLC
                     EPEDIGHAVLFFASPAAARITNQAVAVDGGWSVT"
     gene            1281..>1566
                     /locus_tag="VEQ16_10915"
     CDS             1281..>1566
                     /locus_tag="VEQ16_10915"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP64394.1"
                     /translation="MNFTDWAAIVATKARYCRCLDAKDWEGYADCFTEDFRLMTPPEG
                     NNHDGREAALRYIRSCVETSKTVHHVHNPEISFDSEDSATVIWAMQDRNTW"
BASE COUNT          272 a          463 c          560 g          271 t
ORIGIN      
        1 tgtgcgatgt ggattacaca cgcgagatgg cgattatcgc caagcatgag gatggccgca
       61 ccatgggcgt ggcccgcctc gtgcgcaacg atacggacgg gcgctcggcc gaattcgccg
      121 tgctggtgga gccggcggcg aaggggctgg ggctgggcac ggtgctgatg cacgccatca
      181 tcgagtgggg ccgcgcgaag ggtgtggagg aaatcgccgg tcagattctc tccgacaacg
      241 cccccatgct cgccttcatc cggcggctcg gtttcaccct gtgccgcctt gccgatgagc
      301 cggagatcct ggaggccaaa ttgccgctca cctgacgggc gaggccggga ttaacaaatt
      361 tttcttgttg atttggccta attgataagc cggtcaggtg accgaccatc ccccatccac
      421 ggcgacggcc tgattggtga tgcgcgccgc cgcgggcgag gcgaagaaaa ggacggcgtg
      481 accgatatct tccggctcgc acaagccgag cggcggggga cggcaggccg ggccttgcgg
      541 cgccgggccc cttgcgttga tggcgccttg tgtggcgacg ccgccgggca ggacgaggtt
      601 gacggtgatg ccatgcgagg ccagttcgag cgcgctggcg cgggtgagcc ccagcagcgc
      661 ggccttcgag ctggcatagg cggcatggcc aaaggtaatg gagccgaaaa tggaggcgga
      721 ggcgatgttg acgatgcgcc cgccgccgcc ttgcgccacc atggcgcggg cgatgtcccg
      781 gctcatcaga taagggccgc gggcattcac ggcgagcgtg cggtcccatt ggtccgaagt
      841 tgcgtccagc agcagctcgc ggtcgagcag ggcagcgtta ttgaccagca gccagggtac
      901 gccgaagcgg gcgatggttt cggcgcagcc ctgcgctatg gaattttcgt cggcgaggtc
      961 gatccgcgcc gcgccgcatc cttcgtgcag cgcggcggct tggctttgcg cgctggcgag
     1021 atcgatgtcg gcgataacga cattggcgcc ggcattggcc aggacgcggg cgatgccggc
     1081 gccgatgccg cgcccgccgc cggtgacgag ggcggttttt ccggtgaggt cgaacggcgt
     1141 gctttgcatc attctctggc gctccctatc ccgccgcata ggttgccgtc atgcgaggcg
     1201 acactaccat atgggagtgt ggccggtgcg gccaggggcg taagccgggc aaaatcacag
     1261 cgccggggga gggagcaaaa atgaatttca cggactgggc cgccatcgtg gccaccaagg
     1321 cccgctattg ccgctgcctc gatgccaagg actgggaagg ttatgcggat tgtttcaccg
     1381 aggatttccg gctgatgacg ccgcccgagg gcaataatca tgacgggcgc gaggcggcct
     1441 tgcgttatat ccgctcctgc gtggagacct cgaagacggt gcatcatgtg cataatcccg
     1501 agatcagctt cgacagcgag gacagcgcga ccgtgatctg ggccatgcag gaccgcaata
     1561 catgga
//
LOCUS       DASQCV010000698         4576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1143232, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000698 DASQCV010000000
VERSION     DASQCV010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4576
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1143232"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(17..1750)
                     /locus_tag="VEQ16_10920"
     CDS             complement(17..1750)
                     /locus_tag="VEQ16_10920"
                     /inference="COORDINATES: protein motif:HMM:NF013086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP64395.1"
                     /translation="MAETYDVIVVGSGAAGLSAALRASALGLKVLIVEKAHKYGGTSA
                     TSGGVAWIPNHGLGGSNDTREEALTYLDAVIQGPVNRERLEAYVDTGRDMLGFLGSLG
                     VNFIPMPWPDYFAELPGSRTDRSLVMPMWDGRKLGAKFPLVREQFPRFKLFNRYAMNL
                     EETFTIAARAKGWKRMLVNVISRYWLDQSTRKVTKRDRWFTSGNAVIGPLLEQLSAKT
                     VEIRLETKLEELLVEGGKVTGVRVTRYGTSHEISARHGVILCAGGFEWNQQLRDRFFP
                     VKTSIWWTSTPQGANTGDALLAAESIGAATEHTEEGWWAPTMIMPSVSASNFEEVHQA
                     VFDVGRPSSVCVNRNGDRFVNESCSYDRFGVGMVEDQKKTGANLPCWLIFDSVFRAKF
                     TAGGFLPSAVMPDKSIPVDWWDHYIFKSDTVAELAKKLQLNPAKIENVVKRMNEYAAK
                     GEDPEFGRGSTIYDQAFGDPTCKPNPALGPIVKPPFYAIPIHLGDLGTKGGLKADAKA
                     RVLDGNDQPIPGLFAAGNAAGSPFGLNYPGAGGTIGPAMVFGYVAANDIAARTRNQPT
                     SGKRPKVTAAE"
     gene            complement(1773..>4576)
                     /locus_tag="VEQ16_10925"
     CDS             complement(1773..>4576)
                     /locus_tag="VEQ16_10925"
                     /inference="COORDINATES: protein motif:HMM:NF009588.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="indolepyruvate ferredoxin oxidoreductase family
                     protein"
                     /protein_id="HYP64396.1"
                     /translation="SSVLLPEISVIRPEWSGAALNLRRGLPPLVQESLVLNERLPAAI
                     LFARANGLNRALIAPAQPKLTIVTSGKSYLDVRQALHDLGLDEARCGSLGIGLVKLGM
                     TWPLDQEFIRAACGGARALLVVEEKRPVIEDQLASALYGLAIRPEILGKRDDQGHVLF
                     PADGVLDAVQVRHALLRQMARLGIEDSEVTRRATLLASFEEAAPPPAAIRPAFFCSGC
                     PHNSSTNIPDGSIALGATGCHGLAAFMPERRTMNVVGMGAEGLAWVGAKNFVETKHVF
                     ANMGDGTYTHSGILAIRAALSAKANVTFKILYNDAVAMTGGQPMEGNISVPMIIKELQ
                     AEGVSPVVLVSDAPEQHKDAGVRVLHRDHLDELQRELREVEGVSAIVYEQTCANEKRR
                     RRKRGDYPDPDLRLFINQAVCEGCGDCSRQSNCVSVTPLETEFGRKRAIDQSNCNKDY
                     SCIKGFCPSFVSLRGAKPAKRATDMRELDALIAKLPAPGVVDVKDSYAMLVTGIGGTG
                     VLTVGAILGMAAHMEGKAAKVLDMTGMAQKGGGVMSHVRFSDSAENIPSARLGAGQAD
                     LLVACDLIVASGPDVVKTLRPDTCVAANADVVPTGEFQTRPDLDLTPALFMNAIEQRI
                     GKDNVALLQANALAAKLLGDTIFTNLMMVGFVAQKGLLPVGLDSIEEAVRLNGTAVKQ
                     NLQALALGRLAAANPDALLAFAKLAGTGQPQTLDEMLVSRAAHLTAYQNEAYAKQYSD
                     FMGDIAARLQGRATDASPFLLQVANQLARLMAYKDEYEVARLYSLPSFREELSRQFGG
                     DFKLAINLAPPLLARKRDAKTGRPRKMEFGAWVFSVLKLLSGMKGLRGTALDPFGYTA
                     ERRMERALIKDYRDMVLRLVERMTAANLAEATEIAGAAHLIAGYGPVKEDGVKAYRER
                     ISALLASYEQPHAMAAAAE"
BASE COUNT          842 a         1435 c         1410 g          889 t
ORIGIN      
        1 agggggcttt cggcggctac tccgccgccg tcaccttcgg ccgcttacct gaggtcggct
       61 ggttgcgggt gcgggcggcg atgtcgttgg cggcgacata gccgaacacc atggccgggc
      121 cgatggtgcc gcccgcacca ggataattta acccgaacgg gctgcccgct gcattgccgg
      181 cggcgaacag gccggggata ggctggtcat ttccatccag cacgcgcgcc ttggcatctg
      241 ccttcagccc gcctttggtg ccgagatcgc caagatggat gggaatggcg tagaaggggg
      301 gcttcacgat gggtcccaaa gccgggttgg gcttgcaggt ggggtcgccg aaggcctggt
      361 cgtaaatggt gctgccacgg ccgaattctg gatcttcgcc cttggctgca tattcgttca
      421 tgcgcttcac gacattttcg atcttggccg gattaagctg caattttttt gccagctccg
      481 ccaccgtgtc ggacttgaag atataatggt cccaccaatc gaccgggatg gatttgtccg
      541 gcatcacggc agacggcagg aagccacccg cggtgaattt ggcacggaac acggagtcaa
      601 aaatcagcca gcagggcagg ttggcgccgg tctttttctg gtcttcgacc atcccgacgc
      661 cgaaacggtc ataagagcag ctttcattca caaagcggtc gccatttcgg ttgacacaca
      721 cgctggaagg ccgtccgaca tcgaacacag cttggtgcac ctcctcgaaa ttcgaggcgg
      781 agacgctggg catgatcatg gtcggcgccc accagccttc ctcagtatgt tccgtggcgg
      841 caccgatgga ttctgccgcc agcagcgcat cgccggtatt cgccccctgc ggcgtgctgg
      901 tccaccagat ggaggttttc acggggaaaa accgatcgcg caattgctgg ttccactcga
      961 acccgccggc gcagaggatg acgccatggc gcgcggaaat ctcgtgggac gtgccgtagc
     1021 gggtgacgcg cacgccggtc accttgccgc cctccacgag cagttcctcc agcttcgttt
     1081 ccagccggat ttctacagtc ttcgcggaga gttgttcgag caacgggccg atgacggcgt
     1141 tgcccgaggt gaaccagcgg tcgcgttttg tgaccttgcg tgtagactgg tcgagccaat
     1201 agcgcgagat gacattcacc agcatgcgct tccagccctt cgcgcgcgcc gcgatggtga
     1261 aggtctcttc cagattcatt gcataacgat tgaagagttt gaaacgtgga aattgctcgc
     1321 gtacgagtgg gaatttcgcg ccgagtttgc gcccgtccca catcggcatc accagcgagc
     1381 ggtcggtgcg cgagccaggc agctcggcga aataatccgg ccagggcatg gggatgaaat
     1441 tgacgccgag cgagccgagg aagcccagca tgtcgcggcc cgtatccaca taggcctcaa
     1501 gacgctcgcg attgaccggg ccctggatga cggcatcgag ataggtcagc gcctcctcgc
     1561 gcgtatcgtt actgccgccg agcccatgat tgggaatcca ggcaacgccg ccggaggtgg
     1621 ccgaggtgcc gccatattta tgcgccttct cgacgatgag caccttcagc cctagcgccg
     1681 atgcccgcaa tgccgcgctc aagccggcag cgcccgatcc caccacgatc acgtcatatg
     1741 tctcggccat ttttgctccc cttgtttttg ttctactcgg ctgctgccgc catcgcgtgg
     1801 ggctgttcgt agcttgccag cagagcagaa atccgttccc gataggcttt tactccgtct
     1861 tccttcacgg gcccatagcc ggcgatgaga tgcgcagcac cggctatttc ggtggcctca
     1921 gccagattag ctgcggtcat gcgttcgaca aggcgtagga ccatgtcgcg atagtcttta
     1981 atcagcgcgc gctccatgcg ccgttcggcg gtatagccga aaggatcaag cgccgtgccg
     2041 cgcaatcctt tcatgccgct cagcagcttc aatacagaaa acacccaggc gccaaattcc
     2101 attttccgcg gccgaccggt tttggcgtcg cgcttgcgcg ccagcaaagg cggggcgagg
     2161 ttgatggcga gtttgaaatc gccgccgaat tgcctcgaca actcttcgcg gaaactgggc
     2221 aggctgtaga ggcgcgcgac ttcgtattcg tccttatagg ccataagccg ggcgagctgg
     2281 ttggccacct gcagcaggaa gggcgacgca tccgtggcgc gcccctgcag gcgcgccgcg
     2341 atgtcgccca tgaaatcgct atattgtttt gcgtaagctt cattctggta ggcggtgaga
     2401 tgcgccgcgc ggctgaccag catctcatcc agcgtctgtg gttgacctgt gccggcgagc
     2461 ttggcgaaag ccagcagtgc atccgggttc gccgccgcta gacgccccag cgccagtgct
     2521 tgcaaattct gtttcaccgc cgtgccgttg agccgcacgg cctcctcgat ggagtctagc
     2581 cccaccggca gcagcccttt ctgcgccacg aaaccgacca tcatgaggtt ggtgaaaatc
     2641 gtgtcaccca gcaatttcgc cgccagcgca ttggcctgta gcagtgccac gttgtccttg
     2701 ccgatgcgct gctcgatggc gttcatgaag agggcagggg tgaggtcgag atccgggcgg
     2761 gtctggaact cgccggtcgg taccacatcc gcgttggcgg ccacacacgt atccgggcgc
     2821 aaggttttca ctacgtcagg cccggaggcg acgatgaggt cgcacgccac cagcagatcc
     2881 gcctggccgg cgccgagccg cgcggagggg atgttctcgg ccgagtcact gaagcgcaca
     2941 tggctcatca ccccgccgcc cttctgtgcc atgccggtca tgtccagcac tttcgccgct
     3001 ttaccttcca tatgcgcggc catgccgagg atagcaccga ccgtcagcac gcctgtgccg
     3061 ccgatgccgg tgacgagcat ggcgtagctg tccttcacat ccaccacgcc aggtgctggc
     3121 agttttgcaa tcagcgcatc cagctcgcgc atatccgtgg cgcgctttgc cggcttggcg
     3181 ccgcgtaacg agacgaagga cgggcagaat cccttgatgc agctataatc cttgttgcag
     3241 ttggactggt cgatggcgcg cttgcggccg aactcggttt ccaacggcgt gacggagacg
     3301 caattggact ggcgcgagca atcaccgcag ccttcgcaca cggcctggtt gatgaagagg
     3361 cgcagatccg ggtctggata atcgccgcgc ttgcggcggc ggcgcttctc attggcgcag
     3421 gtctgctcat agacgatggc ggacacgcct tcgacctcac gcaattcgcg ctgcagctcg
     3481 tcgagatggt cgcgatgcag cacacgcacg ccggcatcct tatgctgttc cggcgcgtcg
     3541 ctcaccagca ccacaggcga aaccccttcc gcctgtagtt ccttgatgat catgggaacg
     3601 gaaatattcc cctccatcgg ctgcccgcct gtcatggcca cggcatcatt atagaggatc
     3661 ttgaacgtga cgttagcctt ggccgaaagt gctgcgcgga tggcgagaat gccggaatgg
     3721 gtgtaggtgc cgtcacccat attcgcgaaa acatgttttg tttccacgaa attcttcgcc
     3781 ccgacccagg ccagcccttc cgcgcccatg ccgaccacat tcatcgtgcg ccgttccggc
     3841 atgaaggcgg cgagcccatg gcagccggtg gcgccgaggg cgatgctgcc gtcgggaatg
     3901 ttggtgctgg aattatgcgg gcagccggag cagaagaaag ccgggcggat ggcggcaggc
     3961 ggaggtgcgg cttcttcaaa actggcgagg agcgtggcgc ggcgtgtcac ctcgctatcc
     4021 tctatgccga gccgtgccat ctggcgcagc aaagcgtgtc gtacttgcac ggcatccagc
     4081 acgccgtcgg cggggaacag cacgtgcccc tgatcgtcgc gcttgccgag aatttccgga
     4141 cgtatggcga gcccgtacag agcactggca agctggtcct cgatgaccgg gcgcttttcc
     4201 tccacaacca gcagcgcgcg cgccccgcca cacgcagcac gaataaactc ctggtccagc
     4261 ggccaggtca tcccgagctt caccagcccg atccccagag aaccgcagcg cgcctcgtcc
     4321 aacccgagat cgtgcagcgc ctggcgcaca tcgagatagg atttgcccga tgtgacgatg
     4381 gtgagtttcg gctgcgcggg cgcgatgagc gcgcggttga gcccattggc gcgcgcgaac
     4441 aagatcgctg caggcaggcg ctcattcagc accagcgatt cctgcaccag aggcggcagg
     4501 ccgcgacgca gattcagcgc ggcaccagac cattctggcc tgatcacgga aatctccggc
     4561 agcagcaccg aagagg
//
LOCUS       DASQCV010000699         3464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2964443, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000699 DASQCV010000000
VERSION     DASQCV010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3464
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2964443"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..202
                     /locus_tag="VEQ16_10930"
     CDS             <1..202
                     /locus_tag="VEQ16_10930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FLgD tudor-like domain-containing protein"
                     /protein_id="HYP64397.1"
                     /translation="GGTAGTSYSYDVTATDSSGGNVSVTPYSVYTVEGVNLSSGTPTL
                     NVAGSATTLPVSSVQTILGAAS"
     gene            199..1419
                     /locus_tag="VEQ16_10935"
     CDS             199..1419
                     /locus_tag="VEQ16_10935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HYP64398.1"
                     /translation="MTLQTALSGLLGAQTGLNTVSNDLANASTTAFKSQTALFQDVFP
                     ADAHNVPGIGTATEGISSDLTQGNLTATGNPLDAAIQGNGYFIISNNGSQQYTRDGAF
                     QLNSTTGQLETLNGNTVLGYSGTGGGNLGPITINTGAMPANATGKLGVTLDLNSGDAQ
                     IPGTTIFSTANPASYDETTSVVTYDSLGNANRVQLYLVQNQPAVPGTTPNWSVYAQPE
                     LANGTAAGPSSLVTTLNFTSSGVLSSGGTPPAYNINWGNGAANSNINFNFTGTTLAAQ
                     NFAVAGLTNDGYAPGSYSGTSIDSSGNIVSTYSNNQTLTDGTLALANFLNPEGLTSMT
                     GNIYAANTSSGQPVVSTPGKGLAGTLSGGNLEASNASTSSLLVSLIQYQQAYQANTSV
                     IQTEQQDGQRLSQI"
     gene            1423..2169
                     /locus_tag="VEQ16_10940"
     CDS             1423..2169
                     /locus_tag="VEQ16_10940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein"
                     /protein_id="HYP64399.1"
                     /translation="MQTDSLYTGMAGLQSITARMQAVAGNLANAQTPGYAALQAITQP
                     DFYDGSNAPAGADAAALNNGPDTAQSAPRETGDPMNVALSGDAWLQVQTANGNALTRD
                     GSLAISSTGLLTDSSGNPVLDTNGQPISLPSLTKLEIGSDGTVSGVAASDPTGPARQY
                     GQIALIATPSGTLTPLSGTLYQPPSGAALIPSTNGALHQGYLNESNVDTTQSMMELIS
                     DSRSYQMQTDMMKSQSTASTDLNTLVAQGG"
     gene            2290..3084
                     /gene="flgG"
                     /locus_tag="VEQ16_10945"
     CDS             2290..3084
                     /gene="flgG"
                     /locus_tag="VEQ16_10945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009426 - bacterial-type flagellum basal
                     body, distal rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HYP64400.1"
                     /translation="MNLALDTIATGLSASQTMMDTIADNLSNVNTTGFKSETPEFQTL
                     LYQDGIQPGANSTGQTVYPSGLELGTGVKVASIKDTLTQGTLTSTGNPLDLAINGSGY
                     FQVLLPSGQTVYTRDGAFQLNSSGQLVTSSGYQVLPNVTVPSNATSVTIGTDGTVSVT
                     LPGSSSATQVGQIQLASFVNPQGLQPLGGNLFASTTSSGAAVAGAPQSNGLGSVNQSY
                     LESSNVDVVQAMVNMISAERAYQLGTQVASAIDNQLNYLAQAAAGA"
     gene            3081..>3464
                     /locus_tag="VEQ16_10950"
     CDS             3081..>3464
                     /locus_tag="VEQ16_10950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009427 - bacterial-type flagellum basal
                     body, distal rod, L ring [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HYP64401.1"
                     /translation="MRISPALAVLFLASCATKAPGPPALVQPAPFPVDVRPPEEAQNG
                     SVFPASTSGSLYEPRRDWRVGDLVTIDIVTSSTANNTDNAALKRTGAISNSMTSFMGI
                     PMSFGHINGGSLSPSIDASSDQEYAG"
BASE COUNT          710 a         1138 c          986 g          630 t
ORIGIN      
        1 cggcggcacc gcgggcacga gctacagcta tgacgtgacg gccacggaca gcagcggcgg
       61 caatgtcagc gtcacgccgt acagcgtcta tacggtggag ggcgtcaatc tctccagcgg
      121 cacgcccacg ctcaatgtgg ccggctccgc aaccacgctt cccgtttcct ctgttcaaac
      181 tatccttgga gctgcatcat gactttgcaa acagccctat ccggcctgct cggcgcgcaa
      241 accggcctca acaccgtgtc caatgatctg gccaatgcca gcactacggc cttcaagagc
      301 cagacggcct tgttccagga tgtgttcccg gccgatgcgc acaatgtgcc gggcattggc
      361 acggcgacgg aggggatctc ctcggacctg acgcagggta acctcaccgc cacgggcaac
      421 ccgctcgatg ccgcgattca aggcaatggt tattttatca tttccaataa cggctcgcag
      481 caatatacgc gcgacggcgc gtttcagctc aattccacca cgggtcagct ggagacgctg
      541 aatggtaaca cggtgctggg ctatagcggc acgggcggcg gcaatcttgg gcccattact
      601 atcaataccg gcgccatgcc ggcgaacgcg acggggaagc tgggcgtcac gctcgatctc
      661 aattccggcg atgcgcagat tcccgggacg acgatattct ccacggccaa ccccgccagc
      721 tatgatgaga cgacctcggt tgttacctac gattcgctgg gcaacgccaa ccgcgtccag
      781 ctttatctcg tgcagaatca gcccgccgtc ccgggcacta cgccgaactg gagcgtctat
      841 gcgcagcccg agctcgccaa tggcacggcg gcgggcccgt cctcgcttgt caccacgctc
      901 aatttcacca gctccggtgt gctcagctca ggcggcacac cgccggccta caacatcaac
      961 tggggcaatg gcgcagcgaa ttccaatatc aatttcaatt tcacaggcac cacgctggca
     1021 gcgcagaatt tcgccgtagc cggactgacc aatgatggtt atgcccccgg cagctatagt
     1081 ggcacgagta tcgatagttc cggcaatatc gtctccacct attccaacaa ccagaccctg
     1141 accgacggca cgctggcgct ggcgaatttc ctcaatcctg aagggctgac gtcgatgact
     1201 ggcaatatct acgccgcaaa caccagttcc ggccagcctg tggttagcac gcccggcaag
     1261 gggctcgccg gtacgctctc gggcggcaat ctggaagcct ccaacgcctc gacctcctcg
     1321 ctgctcgttt cgttgatcca gtatcagcag gcctatcagg ccaacacatc cgttattcag
     1381 acggaacagc aggacggcca gcgcctgtcg cagatttaag ccatgcaaac tgattcactc
     1441 tataccggca tggccgggct gcagtccatc accgcaagaa tgcaggcggt ggccggcaat
     1501 ctcgccaatg cgcagacacc gggctacgcc gctttgcagg ccatcacgca gcccgatttc
     1561 tatgatggca gcaacgcgcc ggcgggcgcc gatgccgcgg cactcaataa tgggccggac
     1621 acggcgcaaa gcgcgccgcg cgagacgggt gacccgatga acgtggcgct gagcggcgat
     1681 gcctggctgc aggtgcagac ggccaatggc aatgccctga cacgcgacgg atcgctggcc
     1741 atttcatcca ccgggctgct cacggattcc tccggcaatc cggtgctcga tacaaatggc
     1801 cagcccatta gcctgccgtc tttgacgaag ctcgaaatcg ggtcggacgg cacggtctcg
     1861 ggtgtcgcgg cctctgaccc caccggcccg gcgcggcaat atgggcagat cgccctcatt
     1921 gccacgccat ccggcacact gacgccatta tccggcacgc tctaccagcc gccctcgggc
     1981 gccgcgctta tcccctccac caatggcgcg ctgcatcagg gctatctgaa tgaaagcaat
     2041 gtcgacacga cgcaaagcat gatggagctg atcagtgaca gccgctctta ccaaatgcag
     2101 acggacatga tgaaaagcca aagcacggcc tcaacagatt tgaacacgct ggtggcgcaa
     2161 ggtggatgat gtgttggcgc ggtaaaggcg ccatgaatgg aatgggtaga gataactctg
     2221 ccgccacaag cataaagcgg cgcgacaaca aagtttttat gggatcgcgc ttcactatgg
     2281 agcaaaaaga tgaatttggc acttgatacg attgcgacgg ggctgtcggc gagccagacg
     2341 atgatggaca cgatcgccga taatctctcc aacgtgaata cgaccgggtt caagtcggag
     2401 acgccggaat ttcagaccct gctttaccag gacggtatcc agcccggtgc caactccacg
     2461 ggccagacgg tctatccctc cggtttggag ctgggcacgg gcgtgaaagt ggcctccatc
     2521 aaggacacgc tcacgcaagg cacgctgacc agtacgggca acccgctcga tctcgccatc
     2581 aacggcagcg gctatttcca ggttctgctg ccttcgggcc agacggtcta tacgcgtgac
     2641 ggcgcgttcc agctcaattc ttccggccag ctcgtcacct cctcgggcta tcaggtgctg
     2701 ccgaatgtga cggttccgtc caacgccacc tcggtgacca tcggcacgga cggcacggtt
     2761 tccgtcacgc tgcccggctc ctccagcgcc acgcaggtcg ggcagatcca gctcgccagc
     2821 ttcgtcaatc cacaagggtt gcagccgctg ggcgggaatc tttttgcctc caccacctct
     2881 tcgggcgcgg ccgtggcggg cgcaccgcag agcaacgggc ttggctcggt caatcagagc
     2941 tatttggaat cgtccaatgt cgatgtggtg caggccatgg tcaacatgat ttccgccgaa
     3001 cgtgcctatc agcttggcac gcaggtggcc agcgccatcg acaaccagct caactacctc
     3061 gcccaggccg ccgccggcgc atgaggatct ctcccgccct cgccgtgctg tttctggcca
     3121 gctgcgccac caaggcgccg ggtccgccag ctctggtgca gccggcgccc tttccagtgg
     3181 atgtgcgccc gcccgaggag gcgcaaaatg gctcggtttt tcctgcctcc acctccggct
     3241 cgctctacga gccgcggcga gactggcgcg tgggcgatct cgtcaccatc gacatcgtga
     3301 ccagcagcac ggcgaataat accgataacg cagccctgaa acgcacgggt gcgatcagca
     3361 attccatgac cagcttcatg ggtatcccga tgagcttcgg ccatatcaat ggcggcagcc
     3421 tctcgcccag catcgatgcg agttccgacc aggaatatgc cggc
//
LOCUS       DASQCV010000700         2615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2137033, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000700 DASQCV010000000
VERSION     DASQCV010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2615
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2137033"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..363)
                     /gene="coaE"
                     /locus_tag="VEQ16_10955"
     CDS             complement(<1..363)
                     /gene="coaE"
                     /locus_tag="VEQ16_10955"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012040291.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HYP64402.1"
                     /translation="MMIIGLTGGIGMGKSTVAAMFAAHGIPAFNADDAVHELQAKDGA
                     AIPAIDAAFPGVIHDGVLDRAALRALVLADREKMKMLETIMHPLVRGKQAEFMAQAKE
                     QARRAVLLDIPLLFESNAA"
     gene            complement(360..1184)
                     /locus_tag="VEQ16_10960"
     CDS             complement(360..1184)
                     /locus_tag="VEQ16_10960"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HYP64403.1"
                     /translation="MRLLTGSARLAGVIGWPVAHSRSPRIHGTWLNRHGIDGAYVPLP
                     VAPENFAEAVNGLAKAGFAGANVTIPHKEAAFAVCSRVEDFARRAGAVNTLVFTPDSI
                     EGRNTDGYGFIANLRAHGVNPVAGPVLILGAGGAARAIAAALQDEGAEVTICNRSHDR
                     AVALAASLPPARVLPWGAREAALSDFALLVNTTSLGMVHNPPLEMSLERAAAGMAVAD
                     IVYAPLETSLLAEAAARGLKAVEGLGMLLHQAVPGFAAWFGVTPQVDEELYRIVAA"
     gene            complement(1091..1741)
                     /locus_tag="VEQ16_10965"
     CDS             complement(1091..1741)
                     /locus_tag="VEQ16_10965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64404.1"
                     /translation="MLPLNLLRRSRLAFVWAVLFTVLLAVASLAAFGREAWVGFVTFT
                     SPAMTNVLLTGKPPEFAGGLISVFAMVKPFIGVHPALAVQAGVSLACVLAGIFTREAT
                     VLLVLSVLASPYLHTYDLVGAALAVALLVEDRLARGFFPGEPVLFFLVWFGPGLLPWM
                     PQYAHLAPLLLVLLLASAWRRGGVAPCDFLPAQPGSPGSSAGRSPIPAPPESTAHG"
     gene            complement(1729..2307)
                     /locus_tag="VEQ16_10970"
     CDS             complement(1729..2307)
                     /locus_tag="VEQ16_10970"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase 87 family protein"
                     /protein_id="HYP64405.1"
                     /translation="MAEKSQFQTRLKLAVILAICMIPAACEAAAIIWGQRHGFTGKAL
                     RDGLDLWAGGFLLLHGQAPILFDHMAYQSFLQGLYGHLPYHLWSYPPSYGLMAAAFGW
                     LPPWGAVLSFDIVTLALLAAVLRLAGKSWWFVTAICVAPATLENALEHQNAALMTALL
                     GGGVLLLEARPRLAGALIGLATIKPSSGWCCR"
     gene            2354..>2615
                     /locus_tag="VEQ16_10975"
     CDS             2354..>2615
                     /locus_tag="VEQ16_10975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012224761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYP64406.1"
                     /translation="MISALMPNYARANIAFTHGQGAWLVAEDGRRYLDFGAGIATSSL
                     GHGHKHLTTAIAEQAAKVIHVSNLYRVPQAERLAGRYVAASFA"
BASE COUNT          525 a          981 c          732 g          377 t
ORIGIN      
        1 cgccgcgttg gattcgaaca gcagcggaat atccagcaac accgcccgcc gcgcctgttc
       61 ttttgcctgc gccatgaatt ccgcctgctt cccgcgcacc agcggatgca tgatcgtctc
      121 gagcattttc atcttctcgc ggtccgccag caccaaagcg cgcaaggcgg cgcggtcgag
      181 cacgccatca tgaatcacgc cgggaaatgc cgcatcaatc gccggaatgg ccgcgccgtc
      241 tttcgcctgc aattcatgca cggcgtcatc cgcattgaag gccggaatcc catgcgccgc
      301 gaacatcgcc gccacggtgg atttccccat gccgatgccc cccgtgaggc cgataatcat
      361 catgccgcaa caatccggta gagttcctca tccacctgtg gcgtcacccc gaaccaggcg
      421 gcaaaacccg gcacggcctg gtgcagcaac atccccaacc cctccaccgc cttcagcccg
      481 cgcgcggcgg cctccgccag caaagaggtt tccaaaggcg catacacaat atccgccacc
      541 gccatccccg ccgccgcccg ctccaggctc atctccagcg gcgggttatg caccatgcct
      601 aaagaggtcg tattcaccag cagcgcgaag tcgctcagcg ccgcctcacg cgctccccag
      661 ggcagcaccc gtgccggcgg caaggaagcg gccagcgcga cggcccggtc gtgcgagcgg
      721 ttgcagatcg tcacttccgc gccctcatcc tgcagtgccg ccgcaatggc ccgcgccgcg
      781 ccgcccgcgc ccagaattag caccggcccg gccaccggat tcaccccatg cgcgcgcaga
      841 ttggcgataa acccgtaccc atccgtattg cgcccctcta tgctgtccgg cgtgaaaacc
      901 agcgtattca cagccccggc ccggcgcgcg aaatcctcca cgcggctgca cacggcaaag
      961 gcagcctcct tgtgcgggat ggtcacattt gctccggcaa acccggcttt cgccagcccg
     1021 ttcaccgctt cggcaaaatt ctcaggcgcc accggcagcg gcacataagc gccgtcaatc
     1081 ccatggcggt tcagccatgt gccgtggatt cggggggagc gggaatgggc gaccggccag
     1141 ccgatgaccc cggcgagccg ggctgagccg gtaagaagtc gcatggcgcc acaccaccac
     1201 ggcgccacgc gcttgccaag agcagcacca acagcagcgg cgccagatgc gcatattgcg
     1261 gcatccaggg cagcagcccc ggcccgaacc agacgaggaa gaacagcact ggctcgccag
     1321 ggaaaaatcc gcgcgccagt ctgtcctcca ccagcagcgc cacggcgagt gccgccccca
     1381 ccaggtcgta agtgtgcaaa taagggctcg ccagaaccga cagcaccagc agtaccgtgg
     1441 cctcgcgcgt aaaaatcccc gccagcacgc aggccaggct cacccccgcc tgcaccgcca
     1501 gtgccggatg cacgccgatg aacggcttca ccatcgcaaa aacgctgatc agcccgcccg
     1561 cgaattccgg cggcttgccg gtcagcagca cattggtcat ggccgggctg gtgaacgtaa
     1621 caaaccccac ccaagcctcc cgcccgaacg ccgccaagga agccaccgcc agcagcaccg
     1681 taaacaaaac cgcccaaaca aaagccagcc gcgagcgccg cagcaaattc agcggcagca
     1741 ccagcccgag ctgggcttga tggtcgccag cccgatcagc gcccccgcca gccgcggccg
     1801 cgcttccagg agcagcacgc caccgccgag caacgccgtc atcagcgccg cattctgatg
     1861 ctccagcgcg ttctccagcg tcgccggcgc cacgcatatc gccgtcacga accaccagct
     1921 ctttcccgcc agccgcagca ccgccgccag caacgccagc gtgacaatgt cgaaactgag
     1981 caccgccccc cagggcggca gccagccaaa cgccgccgcc atcagcccgt agctcggcgg
     2041 atagctccac aaatgatagg gcaggtgccc ataaagcccc tgcagaaagg actggtaggc
     2101 catatggtcg aacaggatcg gcgcttgccc gtgcaggagc aaaaacccgc ccgcccatag
     2161 atccagcccg tcccgcagcg ctttgccggt aaagccatga cgctgccccc aaatgatggc
     2221 cgctgcctcg cacgcggccg gaatcatgca gatggccagg atcacggcca gcttgagacg
     2281 ggtctggaat tgactttttt cggccatatg cgctttattc cgggctttcg ttccgcgctt
     2341 tgaaagcata ttcatgatct ccgcgctaat gccgaattac gcccgcgcca atatcgcctt
     2401 cacccatggc cagggagcct ggctggtggc ggaagacggc cgacgctatc tcgatttcgg
     2461 cgctggcatc gccacctcct cgctgggcca tgggcataag cacctcacca cggcgattgc
     2521 cgagcaggcg gccaaggtga ttcatgtgtc caacctgtac cgcgtgccgc aggccgagcg
     2581 cctggccggg cgctacgtgg cggccagctt cgcgg
//
LOCUS       DASQCV010000701         1685 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1641364, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000701 DASQCV010000000
VERSION     DASQCV010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1685
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1641364"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1102)
                     /locus_tag="VEQ16_10980"
     CDS             complement(<1..1102)
                     /locus_tag="VEQ16_10980"
                     /inference="COORDINATES: protein motif:HMM:NF012789.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HYP64407.1"
                     /translation="MTAIDLANEEQRKASNPLVSTFTAASAGSGKTKLLTDRLLRLML
                     GGARPEKILCLTYTKAAAAEMRIRLNARLGKWVVLPREALEAELRALDVVPDAKTLGL
                     ARKIFADVLDLPGGMRIETIHAFCQSLLRRFPLEAELSPHFEVADDEKAALRLREARE
                     AALADAEARGAIEALAGEIDEQSFARLTQEFCASPEAALLSGSAPAVAALQRAALGAN
                     EGECADIIAQAVMVPGEAELREMFLRIAYQGTASGQARAQFWLDWLAQPPEERGKNWE
                     EWAVSFFTTAGEPRKMGPICGKALRAVEEEIDAVIGRERDRIRIVQERVKTARLAALN
                     EAAVTLLLPILAAERGAKQMAAQLSYGDLISYT"
     gene            complement(1089..>1685)
                     /locus_tag="VEQ16_10985"
     CDS             complement(1089..>1685)
                     /locus_tag="VEQ16_10985"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HYP64408.1"
                     /translation="PRAALDHWWAARLARIAEWVVALEQSRRAELGVPQALAHEQTGE
                     MVFPGGFVLRGRADRIERAADGGISLIDYKTGTVPSAAAVEAGIAPQLPLEAVMAEAG
                     MFGEEFFAAVTELAYMRLSGRADAGEETRLFKSKPEKLRAAVERAGAALQDLFDRFAD
                     ERTAYLAAPHPSRVNIYDAFAGISRRAEWAGEDQDDGD"
BASE COUNT          288 a          681 c          448 g          268 t
ORIGIN      
        1 ccgtatacga aattaaatcg ccataggaaa gctgcgccgc catctgcttc gcgccccgct
       61 ccgccgccag gatcggcagc agcagcgtca ccgccgcctc attcagcgcc gccagccgcg
      121 ccgtcttcac ccgctcctgc acaatgcgga tgcggtcgcg ctcgcgcccg atcaccgcat
      181 cgatctcctc ctccaccgcg cgcagcgcct tgccgcaaat cggtcccatc ttgcgcggtt
      241 caccagcggt ggtgaagaag gatacagccc attcctccca attcttgccg cgctcctccg
      301 gcggctgtgc cagccagtcc agccagaatt gggcgcgcgc ttgcccgctt gccgtgccct
      361 gataagcgat gcgcaagaac atctcgcgca attccgcctc gcccggcacc atcaccgcct
      421 gcgcaatgat atccgcgcac tctccttcgt tcgcccccag cgccgcgcgc tgcagcgccg
      481 ccacggccgg cgcggagccc gagagcagcg cagcctcggg gctcgcgcaa aactcctgcg
      541 tcagccgcgc aaaactctgc tcgtcaatct cccccgccag cgcctctata gccccgcgcg
      601 cctccgcatc cgccaaagcc gcctcgcgcg cctcgcgcag gcgcaaagcc gccttctcat
      661 catccgccac ctcgaaatgc ggcgaaagct ccgcttccag cggaaagcgc cgcagcagag
      721 actggcagaa ggcatggatc gtctcgatcc gcatcccacc cggcagatcc agcacatcgg
      781 cgaaaatctt gcgtgccagc cccagcgtct tcgcatccgg caccacatcc agcgcgcgca
      841 gctccgcctc cagcgcctcg cgcggcagca ccacccattt gcccagccgc gcattcagcc
      901 ttatgcgcat ctccgccgcc gccgccttgg tgtaggtgag gcagagtatc ttctccggcc
      961 gcgccccgcc cagcatcagc cgcagcagcc tgtccgtcag cagcttggtc ttgccgctcc
     1021 ccgccgaggc cgccgtaaag gtggagacca gcggattgga tgccttgcgc tgctcctcat
     1081 tggccaggtc aatcgccgtc atcttggtcc tcgcccgccc attccgcccg gcgcgagatg
     1141 ccggcaaatg catcatatat attcacccgc gagggatgcg gcgccgccag ataagccgtg
     1201 cgctcatcgg caaatctgtc aaacagatcc tgcaaggccg cccccgcgcg ttccaccgcg
     1261 gcccgcaact tctcaggctt gctcttgaat aaacgcgtct cctcacccgc atcggcgcgg
     1321 ccggagaggc gcatataggc cagctccgtc acggcggcga aaaattcctc gccgaacatg
     1381 cccgcctccg ccatcaccgc ctccaacggc aattgcggcg cgatgcccgc ctctacggct
     1441 gcggccgacg gtaccgttcc cgtcttgtaa tcaatcagcg agatgccgcc atcggccgcg
     1501 cgctctatcc tatcggcacg gccgcgcagc acgaacccgc cgggaaacac catctccccc
     1561 gtctgctcat gcgccaaagc ctgcggcacg cccaactcgg cgcggcgcga ttgttccagc
     1621 gccaccaccc attcggcgat gcgcgccagc cgcgccgccc accaatggtc caaagccgcg
     1681 cgtgg
//
LOCUS       DASQCV010000702         2954 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1641747, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000702 DASQCV010000000
VERSION     DASQCV010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2954
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1641747"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..188)
                     /locus_tag="VEQ16_10990"
     CDS             complement(<1..188)
                     /locus_tag="VEQ16_10990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase"
                     /protein_id="HYP64409.1"
                     /translation="MNSKYRKQLPGTGLDYFDAREAVEAIAPGAYDGLPYTSRVLAEN
                     LVRRCEPALLTDALKQLI"
     gene            complement(185..883)
                     /locus_tag="VEQ16_10995"
     CDS             complement(185..883)
                     /locus_tag="VEQ16_10995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HYP64410.1"
                     /translation="MQKTQILPNGAAGEGETLTDHALRQLQSAIVKGDIAPGSKISEP
                     ELARAYGISRGPLREALHRLEGQKLLVRVPHVGARVVSLSRQELSELYEIRESLEGLA
                     CRLAAAHMAPEQVEALRAVLREHERDEAFQAGRGYYLQEGDYDFHYRIVQGSGSKMLI
                     RLLCDELYQLARMYRIQHSTTPNRPGQAFAEHHRILDAIADGDGELAEMLMRRHIRTS
                     RLNIERQIPQETDK"
     gene            complement(1029..1253)
                     /locus_tag="VEQ16_11000"
     CDS             complement(1029..1253)
                     /locus_tag="VEQ16_11000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64411.1"
                     /translation="MRTWKQLFVVAGLLLAASSLSACYYDPYWGGGPDWHHGGDYDDH
                     DHGDHGYGDHDYGDHGPGGPGHGWGPGGGY"
     gene            complement(1408..1782)
                     /locus_tag="VEQ16_11005"
     CDS             complement(1408..1782)
                     /locus_tag="VEQ16_11005"
                     /inference="COORDINATES: protein motif:HMM:NF039485.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidB family protein"
                     /protein_id="HYP64412.1"
                     /translation="MGLFDSLTNLAGGLLGGEGGGSPAAQLAGPVMAALQQNGINGVG
                     DLVQQFQQGGFAEHAASWVGNGQNQPIEASAIQQVLGQPVLADLAAKFGVDPQQASSL
                     LAQHLPDIISHLTPGGQVPAQS"
     gene            2075..2545
                     /locus_tag="VEQ16_11010"
     CDS             2075..2545
                     /locus_tag="VEQ16_11010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64413.1"
                     /translation="MLKSLTLAATLAIFGILAVTPPVYAQTASTGVTLTCKDGSTWTG
                     KSTQGACAHHGGVAPTQSSASTAPGTGMGMAPAAGTGMSSGMSSGMSSGMSSGMSSTP
                     ASGGGAGKVWVNTSSKVYHCPGDKYYGKTKQGEYMMESAAVAAGDKPAMGKSCK"
     gene            2612..2869
                     /locus_tag="VEQ16_11015"
     CDS             2612..2869
                     /locus_tag="VEQ16_11015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009539961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HYP64414.1"
                     /translation="MGIISWLILGLIAGFIGSKIVNKSGEGFFLDIILGIIGAFVGGF
                     IFHLLGFAGVTGLNLWSMLVAVIGAIVVLFAYHMITGNKTA"
BASE COUNT          591 a          982 c          836 g          545 t
ORIGIN      
        1 tcgatgagct gcttcaacgc atcggtgagc aacgcgggtt cgcagcggcg caccagattc
       61 tcggcgagca cacgcgaggt gtaaggcagc ccgtcatagg cgccgggcgc aatcgcctcc
      121 acggcttcgc gcgcgtcgaa ataatccagg ccggtgccgg gaagctgctt gcgatattta
      181 ctattcattt gtctgtttcc tgtggaattt gccgttcgat attgaggcgg gaggttcgga
      241 tatgccggcg catcagcatc tccgccaact cgccatcgcc atccgcgatg gcatcgagaa
      301 tgcggtgatg ttcggcgaaa gcctggccgg gacggttcgg cgtggtggaa tgctggatgc
      361 ggtacatgcg ggcgagctgg taaagctcat cgcagagcag gcggatgagc atcttgctcc
      421 cgctgccctg aacgatccgg taatggaaat cgtaatcgcc ttcctgcaaa taatagccgc
      481 gtccggcctg aaacgcttcg tcgcgctcat gctcgcgcaa aaccgcgcgc agcgcctcca
      541 cctgttcggg cgccatgtgc gcggccgcca ggcggcaagc cagcccttca agcgattccc
      601 gtatctcata cagctcgctc aactcctgcc ggctcaacga gaccacgcgc gcgcccacat
      661 gcggcacacg gaccagcaat ttctgcccct ccagccggtg cagcgcctcg cgcagcgggc
      721 cgcggctgat gccataggcg cgtgccagct ccggctcgga aatcttgctc cccggcgcga
      781 tatcgccctt cacgatggcg gattggagct gccgcaaagc atggtcggta agggtctcgc
      841 cctctccggc ggcgccattc ggcaatatct gggttttctg catagtgttg acagtcgccc
      901 tgcgtttccg cgataaactg gtggattttt agtcctccag cagataactg tcaacaatag
      961 ctgccatgtg gcggcatagc gggcatacag aaacggagct gatgggcccc gtttcccgct
     1021 tatgccgttt agtaaccgcc gcctggcccc cagccatgcc ccggcccgcc tgggccatgg
     1081 tcaccatagt catgatcacc atagccatgg tcgccatggt catgatcatc gtaatcgccg
     1141 ccatgatgcc agtcagggcc gccgccccaa taggggtcgt aataacaggc ggacagggag
     1201 ctggcggcca gcaaaagccc cgccaccaca aagagttgtt tccaggttcg catcagccac
     1261 tcctattcaa cctgaggagt ggcgagacaa ccatcgaaat gcggccaaag aacggacaaa
     1321 atataacaaa atcagggccg caccgcgcac atgcccgccc tcgccgggcc atccgcccgg
     1381 taccagcctc cgcgcggctg gcggcgttca gctttgcgcg ggcacctgcc cacccggcgt
     1441 cagatggctg ataatatccg gcaaatgctg cgccagcagg ctgctcgcct gctgcgggtc
     1501 cacgccgaat ttcgcggcga ggtcggccag caccggctgc cccagaacct gctggatcgc
     1561 gctcgcctca atcggctgat tttgcccatt accgacccag gaagcggcat gctcggcaaa
     1621 gccaccctgc tggaattgct gtaccagatc accgacgcca ttgatcccgt tctgctgcag
     1681 cgccgccatc accggcccag ccagctgcgc cgccgggctg ccgccgcctt cgccacccag
     1741 aagcccgccc gcgagattgg tcaaactatc gaagagtccc atcccaatat cccccattcg
     1801 atgctagcgg cggaagacta agccggatga cgcgcggcca acagggcgta acgcccgcca
     1861 cattgccaat tcaacataaa ttcatgaagt taccagcttc cggcaagaga ccaagccccc
     1921 cgcctttgct atgtaagaag ctggcggaac acagattttt tcagtatcat atgcccaacg
     1981 gtctgctcgc tcatcatctg cccgcgtcct gtgaaaccgc ctccacgtgc tcagcgcccc
     2041 ggtcactcac cagtaaaatt ttcaggagac caaaatgcta aaatccctga ctctcgcggc
     2101 caccctcgcc attttcggca tcctcgccgt cacgccgccc gtctacgcgc aaaccgccag
     2161 cacgggcgtt accctcacct gcaaagacgg ctcaacctgg accggcaagt ccacccaggg
     2221 cgcctgcgcg caccatggcg gcgtcgcccc gacgcaaagc agcgccagca ccgcacccgg
     2281 caccggaatg ggcatggccc ctgccgccgg caccggtatg agttccggta tgagttccgg
     2341 catgagttct ggcatgagtt ctggcatgag ctccaccccg gcgtctggcg gcggggctgg
     2401 caaggtttgg gtcaacacct cgtccaaagt ctatcactgc ccgggcgaca aatattacgg
     2461 caagaccaag caaggcgaat acatgatgga atccgccgca gtcgccgcgg gggacaagcc
     2521 cgccatgggc aaatcctgca agtaacggcg acagggagcg ggcaatggcc gctccctgcc
     2581 ttcacgcaga accagatcac ggagatccga tatgggtatc atttcctggc tgatccttgg
     2641 actgattgcc ggcttcatcg gcagcaagat cgtgaataaa agcggggaag gcttcttcct
     2701 cgacatcatc ctcggcatca tcggcgcctt cgtcggcggc ttcatattcc atctgctcgg
     2761 tttcgcgggc gtcactggcc tcaatctctg gagcatgctg gtcgcggtca tcggcgccat
     2821 cgtcgtgttg tttgcctacc acatgataac tggcaacaag acggcctgag gagacagcgc
     2881 ggacaggact tagcgtccgg catggcggcg ccttcgcgcg ccattttccc gggaaaatgg
     2941 cgcgcgaagg cgcc
//
LOCUS       DASQCV010000703         2243 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2303708, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000703 DASQCV010000000
VERSION     DASQCV010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2243)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2243)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2303708"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..720
                     /locus_tag="VEQ16_11020"
     CDS             <1..720
                     /locus_tag="VEQ16_11020"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010395161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HYP64415.1"
                     /translation="FGIANSALFTVVTTDASCGAVNNVHDSLTPLGGLVPLVNIELGE
                     VIFGGVGSGLYGMLLFAVLAVFIAGLMVGRTPEYLGKKIEQKEVKMMMLAVLVLAFSI
                     LGFAAAGSNLNAGTSALTNHGPHGLSEILYAYSSAVGNNGSAFAGLSANTPFWNTTLG
                     FAMLFGRFLMMIPLLAAAGSLAQKKPVPVSAGTFPTHGPLFVVLLVGVVLIIGALTFF
                     PVLSLGPVVEHFLMHQGRLWS"
     gene            722..>2243
                     /gene="kdpB"
                     /locus_tag="VEQ16_11025"
     CDS             722..>2243
                     /gene="kdpB"
                     /locus_tag="VEQ16_11025"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011384315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HYP64416.1"
                     /translation="MATATTTPPAVPDDVTSLIPKKAPRARPLLDPPIVKRAIADSVR
                     KLNPRTMMKNPVMFVVEVGAAVTTVLTVRDNLAGAGVAGFTFQITLWLWFTVLFANFA
                     EAMAEGRGKAQADTLRKTKTETTARRIRNGTAEIVAATGLRAGDVVLVEPNEIIPGDG
                     DVIEGISTVDESAITGESAPVIRESGGDRSAVTGGTRVLSDWIKIRITSNPGETFLDR
                     MIALVEGAERQKTPNEIALNIVIAGLTLVFLLAVVTLQPFAIYSVATSGSGTAPSVTV
                     LISLLVCLIPTTIGGLLSAIGIAGMDRVMQHNVLAMSGKAVEAAGDVNTLLLDKTGTI
                     TLGNRQAVEFIPVGGVAEEELADAAQLSSLADETPEGRSIVVLAKQKYQMRGREVAEH
                     EARFIPFTAQTRMSGVDLDGRRIRKGATDSVVEFVQEHGGTAPVEVTDITERISRSGG
                     TPLVVADRDRTLGVIHLKDVVKGGMRERFHQLRAMGIRTVMITGDNPLTAAAIAAEA"
BASE COUNT          399 a          720 c          707 g          417 t
ORIGIN      
        1 ttcggcattg ccaattccgc gctcttcacc gtggtgacca ccgacgccag ttgcggcgcc
       61 gtcaataacg tgcacgacag cctcacgccg ttgggcggcc tggtgccgct ggtcaacatt
      121 gagctgggcg aggtgatctt cggcggcgtc ggctcgggct tgtacgggat gctgctgttc
      181 gctgtgctgg ccgtgttcat cgccggattg atggtcggcc gcactcccga gtatctcggc
      241 aaaaagatcg agcagaagga agtcaagatg atgatgctgg cggtgctggt gctggctttc
      301 agcattctcg gcttcgcggc tgcgggatcc aacctgaacg ccggaaccag cgccttgacc
      361 aatcacggcc cgcacggcct ttcggagatt ttgtacgctt acagcagcgc cgtgggcaac
      421 aacggcagcg cgtttgccgg cctcagcgcc aacacgccgt tctggaatac cacgctggga
      481 ttcgcgatgc tgttcggccg ttttctgatg atgatcccct tgctggcggc ggccggcagc
      541 ctggcgcaga agaagccggt gcccgtctcg gccggaacct ttcccaccca cggtcccctg
      601 ttcgtggtcc tgctggtggg cgtggtgctg attattggcg cgctgacgtt ctttccagtg
      661 ctttcgctag ggcccgttgt ggaacacttc ctgatgcacc agggaaggct gtggagctaa
      721 tatggcaacc gcgaccacaa ctccgcctgc ggtaccagat gacgttacat cgctgatccc
      781 caagaaggcg ccgcgggcgc gtccactgct cgatccgccc atcgtcaagc gcgccattgc
      841 ggactcggtc cgcaagctga atccgcgcac catgatgaag aatccggtga tgttcgtggt
      901 ggaggtcggc gcggccgtca ccaccgtact cacggtgcgg gacaatttgg cgggcgcggg
      961 cgtcgccggt ttcaccttcc agatcacctt atggctctgg ttcaccgtgc tgttcgccaa
     1021 cttcgccgaa gccatggcgg agggccgtgg caaggctcag gcagacacgc tgcgcaagac
     1081 gaaaaccgaa accacggcgc gccgtatccg caacggaacc gctgagattg tcgcggccac
     1141 cgggcttcgc gccggcgacg tggtgctggt cgagcccaac gaaatcatcc ccggagatgg
     1201 cgatgtgatc gaaggcatct ctaccgtcga cgagtcggcc atcaccggtg agagcgcccc
     1261 cgtcatccgc gaatcgggcg gcgaccgcag cgccgtcacg ggaggcacca gagttctttc
     1321 ggactggatc aaaattcgca ttacctccaa cccgggtgag actttcctcg accgcatgat
     1381 cgcgctcgtg gaaggcgccg agcgccaaaa gacgcccaac gagatcgcgc tgaacatcgt
     1441 cattgccggc ctgaccctgg ttttcctgct ggcggtagta acgctccagc ctttcgctat
     1501 ttacagcgtg gcaaccagcg gcagcgggac cgctccttcg gttacggtcc tgatctcgct
     1561 gctggtttgc ctgattccga ccaccatcgg cggcctgctc tccgccatcg gcatcgcggg
     1621 catggaccgg gtgatgcagc acaacgtgct cgccatgagc ggcaaggcag tcgaggccgc
     1681 tggggatgtt aacacccttc tgctcgacaa aaccggcacc atcacgctcg gcaaccgcca
     1741 ggcggtcgag ttcattcctg tgggaggcgt ggcggaagaa gagctggccg atgcggcgca
     1801 gctctccagc ctcgctgacg aaacgccgga aggccgctcc attgtggttc ttgccaagca
     1861 gaaataccag atgcgcgggc gcgaggtggc ggaacacgag gcgcgcttca ttcccttcac
     1921 cgcgcaaacg cgaatgagcg gcgtcgatct ggacggccgc cgcatccgca agggcgctac
     1981 cgactccgtg gtcgagtttg ttcaggaaca tggcgggacg gcgccagtcg aggtgaccga
     2041 tatcacggag cgcatctcgc gctcgggcgg cacgccgctg gtagtcgccg accgagaccg
     2101 cacgctgggc gtcatacacc tcaaggatgt cgtcaagggc ggcatgcgcg agcgcttcca
     2161 ccagcttcgc gccatgggca tacgcaccgt gatgatcacc ggcgataatc cgctcaccgc
     2221 cgccgccatt gccgcggaag ccg
//
LOCUS       DASQCV010000704         1616 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_978849, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000704 DASQCV010000000
VERSION     DASQCV010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_978849"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(331..1071)
                     /gene="istB"
                     /locus_tag="VEQ16_11030"
     CDS             complement(331..1071)
                     /gene="istB"
                     /locus_tag="VEQ16_11030"
                     /inference="COORDINATES: protein motif:HMM:NF013828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element helper ATPase IstB"
                     /protein_id="HYP64417.1"
                     /translation="MNLIELERSLRQLRLGGMAAVLETRLRQAQAETMAPIDLISCLV
                     SDELTRRADRLLERRRKHAGFRDPDRTLDNFDFTFNPKMNRSLVFDLATGTFIGKRED
                     ALFLGPGGTGKSHLAQAIGQCAIQQGYKVLYRETHILLDELAEAVAEGTRREYMESVS
                     TVPLLIIDDFGMRKLPLTAAEDLLEIIMRRYERCSTLLTSNRPVEDWGKLLGDVAAVS
                     AMLDRLLHHGHLLKRGPRSWRTKTAATS"
     gene            complement(1068..>1616)
                     /locus_tag="VEQ16_11035"
     CDS             complement(1068..>1616)
                     /locus_tag="VEQ16_11035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="HYP64418.1"
                     /translation="RTVHLDGCVEVEAAYYGAPPGWISRRVQVQWDDHHVRLLNPHTG
                     ELLREHLRHARGGHRIKEEDRPKQTPLTTQQLLRRAEVAGPHLGTLCQTLYRAEGEAA
                     VRRILGLLALAKKYGAASADDACAMALESGVCTYRFVRRYLERHLQLPLSLRQVDPLI
                     RQLTLYRDFIETRTQNHQEKEP"
BASE COUNT          289 a          474 c          540 g          313 t
ORIGIN      
        1 cagtgcgtgt taaacctcgg tggacacctg aaacccggcc atagatggcc acttcaaaac
       61 cggcctacgg gaccgaccca gaacaccttt acttatacat tgtcagcgtt gattgtgcca
      121 acattttttg gcgacgcggc ggcgagtcgc ttatactgac ttcacctggg cggaggatac
      181 ggcaacgcag ggatgcgacc ggagcgccga cccagcggcc ggaatggcgg ggcggcgata
      241 gccgccccag tccgcagcca ttctggcggg aatgcggtaa atcccgggag cgcgagggca
      301 gagccctcgc atcaaaagag ccaaccttcc ttatgatgtg gccgcggtct tggtgcgcca
      361 gctccgggga ccgcgcttga gcaggtgacc gtgatgcagc aggcgatcga gcatggcgct
      421 gaccgcggcg acatcgccga ggagtttgcc ccagtcttcg accgggcgat tcgaggtcag
      481 cagagtactg cagcgctcgt accggcgcat gatgatttcc aacagatctt cggccgcggt
      541 aagcggcagc ttgcgcattc caaagtcgtc gatgatcagc aatggcacgg tggaaactga
      601 ttccatgtac tctcggcgtg tgccttcggc gacggcctcc gccagttcat ccagcaggat
      661 gtgcgtttcg cgatacagca ccttgtagcc ttgctgaatg gcgcactggc caatcgcctg
      721 cgccaagtgg ctcttgccgg tgccccctgg tcccagaaac agggcgtcct cgcgtttgcc
      781 gatgaaggtt ccggtggcca ggtcgaagac caggctgcgg ttcatcttcg ggttgaacgt
      841 gaagtcgaaa ttatcaaggg tgcgatcggg gtcgcggaat ccggcgtgct ttcggcggcg
      901 ctccagcaat cgatcggcgc ggcgagtgag ttcgtcagaa acgaggcacg agatcagatc
      961 gatgggcgcc atggtttccg cctgcgcctg gcggagccgg gtttccagca cggcggccat
     1021 accgccgagc cgcagttgac gcagcgatcg ttccagttcg atgagattca tggttccttc
     1081 tcctggtggt tttgcgttcg agtttcgatg aagtcgcggt agagcgtgag ctggcggatg
     1141 aggggatcga cttgccgcag gctcaggggc agttggagat gtcgttccaa gtagcggcgg
     1201 acgaagcggt aggtacagac gccgctttcc agggccatgg cgcaggcatc atcggccgaa
     1261 gcggcgccgt acttcttggc cagcgcgagc aagcccagaa tgcggcgcac ggcagcctct
     1321 ccctcggcgc gatagagggt ttggcacagc gttccgaggt gtggcccggc gacttcggcg
     1381 cggcgcagca gttgttgggt ggtgagcggc gtctgtttgg ggcggtcttc ctctttaata
     1441 cggtggccgc cgcgcgcgtg tcgcaggtgc tcccgaagca gttctcccgt gtgcggattc
     1501 aacagacgaa catggtggtc atcccactgc acctggaccc gccggctgat ccaacccggc
     1561 ggcgcgccgt agtaagcggc ctcgacttcc acgcagccgt ccaggtggac ggtgcg
//
LOCUS       DASQCV010000705         2758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3297857, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000705 DASQCV010000000
VERSION     DASQCV010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3297857"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..819
                     /locus_tag="VEQ16_11040"
     CDS             <1..819
                     /locus_tag="VEQ16_11040"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HYP64419.1"
                     /translation="ESPSYTGAMACAEAAGLQIVPVPADANGVRPDLLEDAFRRTSAR
                     LFYGQPNHANPTGATLPEERRRAVLDILTRYGALMIEDDWAHDFHLDTPSPLPPLAAR
                     DANGHIIYVRSLTKCAAPSLRVGVICARGPAFERLHNARLADDFFVPGPLQETAIQLV
                     TAPSWPRHLKALRAALRERRDALAAAVTRYFGPAALPPELPGGLHLWVRLPNGVSDEA
                     LAQKAASAGILISAGSHWFPAEPPAAYVRLGFANIDPEQAGQALAGLARLASGL"
     gene            complement(808..1260)
                     /locus_tag="VEQ16_11045"
     CDS             complement(808..1260)
                     /locus_tag="VEQ16_11045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64420.1"
                     /translation="MSDKRHARPEGGDDPFIEALARLIIPMGMPPIAARMQGYIMLRP
                     EPVSLDELVAGLKVSKSSASVAARLLERYGILRCYTERGTKRVRYGVTERCAGFLQEQ
                     TESIGAMAKLLQGTAAARPDAPAVARLADMGAFYARVHAALAAALSEA"
     gene            1444..2610
                     /locus_tag="VEQ16_11050"
     CDS             1444..2610
                     /locus_tag="VEQ16_11050"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HYP64421.1"
                     /translation="MLDAAAIISEAENRAGVADTDQALRVNLARLTAALNEEARLPPR
                     GEENARNSLLTRTVDRLEGLKFVTEFPEIAEERIAAPVFLTGLPRSGTTYFQYLFDRD
                     ERFRLIRTWETLSPNPPPGFDPISVIRRKEEEEARRNALRPKVENFDAMHLIDRDGPD
                     ECHAFLEQSYAAAGLNNLFRVPGYFDFLLDELDFTQAYAIHKRQLQLLQWRMAPPRWA
                     LKYPNHLLAIGNILDIYPDAHFVMTHRDPVQTLASISKLSLKLRESRYDSPLDPHEVG
                     RQMLHFVQRHIDRIMEASAGPHEARITHIDYYRLLADPVAAMRAAHAGLGLESPPAMH
                     EAVAEWQRKNPKNARGANDYTLEQFGLNDQEVAEQFSPYMRRFDIPRERDGLAR"
     gene            2635..>2758
                     /locus_tag="VEQ16_11055"
     CDS             2635..>2758
                     /locus_tag="VEQ16_11055"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP64422.1"
                     /translation="MNNTDIARVALVTGAARGLGRAIAEALAKQGVSLLLVDILA"
BASE COUNT          475 a         1054 c          769 g          460 t
ORIGIN      
        1 gaaagcccgt cctataccgg cgccatggcg tgcgccgagg ccgccgggct gcaaatcgtc
       61 cccgtccccg ccgatgcgaa tggcgtgcgc ccggacctgc tggaagatgc cttccgccgc
      121 accagcgcgc gcctcttcta cggccagccc aaccacgcca accccaccgg cgccaccttg
      181 ccggaagagc gccgccgcgc cgtgctggat attctcaccc gctacggcgc gctgatgatc
      241 gaggatgact gggcgcacga cttccatctc gacacgccat cccccctgcc gccgctcgcc
      301 gcgcgggatg cgaacggcca catcatctat gtccgctccc tcaccaaatg cgccgccccg
      361 tctttacgcg tcggcgtcat ctgcgcccgt ggcccggcct tcgagcgcct gcataacgcc
      421 cgcctcgccg atgatttttt tgtgcccggc ccgctgcagg aaaccgccat ccagctcgtc
      481 accgcgccct cctggccgcg ccatttgaaa gccctgcgcg ccgccttgcg cgagcgccgg
      541 gacgctctgg ccgccgccgt cacgcgctat ttcggccccg ccgccttgcc ccccgaattg
      601 cccgggggcc tgcatctttg ggtgcgcctg cccaacggcg tttcggacga agccctggcg
      661 cagaaagccg cctccgcggg catattgatc agcgccggct cgcactggtt cccggccgag
      721 ccgcccgccg cctatgtccg tctcggcttc gccaatatcg acccggaaca ggccggccag
      781 gcccttgccg gcctcgcccg cctcgcctca ggcctctgag agcgccgccg ccagcgcggc
      841 atgaacgcgg gcataaaacg cccccatatc cgcgagcctt gccaccgccg gcgcgtccgg
      901 ccgcgccgcc gccgtgccct gcagcaattt cgccatggcg ccaatggact ccgtctgctc
      961 ctgcagaaat cccgcgcagc gctccgtcac gccgtaacgc acgcgcttcg tcccgcgctc
     1021 ggtataacag cgcaggatgc cataacgctc cagcagcctt gccgcgaccg aggcgctgct
     1081 cttgctcacc ttcagcccgg ccaccagctc atccaaactc accggctcgg gcctcagcat
     1141 gatatagccc tgcatcctcg ccgcgatcgg cggcatcccc atcgggatga tcagccgtgc
     1201 cagcgcctcg atgaacggat cgtcgccccc ttcagggcgt gcgtggcgct tgtcactcat
     1261 cacccgtcct gtggaacaaa aaatgctgca ccggagcgcc atacaggggc gcttcgtgac
     1321 ctgccaagcg ctttgtcgcc acccgcccgc tttgacatat tcgacatcca tcgaatatgc
     1381 tcgggccccg aaggaaaaat caagctggcg gccgcttggc cccggcacaa ggggaacgtc
     1441 aaggtgctgg acgccgccgc catcatatcg gaagccgaaa accgcgccgg cgtggccgat
     1501 accgaccagg cgctgcgtgt gaatctcgcg cgtctcaccg ccgccctcaa tgaggaagcc
     1561 cgcctgccgc cgcgcggcga ggaaaatgcc cgcaactcgc tgctcacccg caccgtggat
     1621 cggctggaag ggctgaaatt cgtcacggaa tttcccgaaa tcgccgagga gcgcattgcc
     1681 gctccggtct tcctcaccgg cttgccacgc tccggcacca cctatttcca atatctgttc
     1741 gaccgcgatg agcgcttccg cctcatccgc acctgggaga cgctttcccc caacccgccg
     1801 cccggcttcg accccatctc cgtcatccgc cgcaaggagg aagaggaggc ccgccgcaat
     1861 gcgttgcgcc cgaaggtgga gaatttcgac gccatgcatc tcatagacag agacgggccg
     1921 gatgaatgcc acgccttcct tgagcagagc tatgccgccg ccgggctgaa taatctcttc
     1981 cgcgtgcccg gctatttcga tttcctgctg gacgagctcg atttcaccca ggcctacgcc
     2041 atccacaagc gccagcttca gcttctgcaa tggcgcatgg cgccgccgcg ctgggcgctc
     2101 aaatatccca accatctgct cgctatcggc aatattctcg acatctaccc ggacgcgcat
     2161 ttcgtcatga cccaccgtga cccggtgcag acgctggcct ccatctccaa gctctcgctg
     2221 aaattgcgcg aaagccgcta cgattcaccg ctcgacccgc acgaggtcgg acgccagatg
     2281 ctgcatttcg tgcagcgcca catcgaccgc atcatggaag ccagtgccgg cccccatgaa
     2341 gcgcgcatca cccatatcga ttattaccgc ctgctcgccg accccgttgc cgccatgcgc
     2401 gcggcccatg cagggctcgg gctggaatcg cctccagcca tgcacgaggc ggtggccgaa
     2461 tggcagcgca agaacccgaa aaacgcgcgc ggcgccaatg attacacgct cgaacaattc
     2521 gggctcaacg accaggaggt ggcggagcaa ttctccccct atatgcgccg cttcgacatt
     2581 ccccgcgagc gcgacggcct cgcccgctaa aatcaaaatt cctgaggagc catcatgaac
     2641 aacacggaca tagcgcgcgt tgccctcgtc accggcgctg cgcgcggcct gggccgggcc
     2701 attgccgagg ccctggcgaa gcagggggtg tcgctcctcc tggtggatat cctggccg
//
LOCUS       DASQCV010000706         4372 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1145889, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000706 DASQCV010000000
VERSION     DASQCV010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4372
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1145889"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..249
                     /locus_tag="VEQ16_11060"
     CDS             <1..249
                     /locus_tag="VEQ16_11060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64423.1"
                     /translation="TMMVIGAVGNLTVNSLELLGKSAAVRGWYSGTAADSEDTLLFSE
                     LNKISSMNEIFPLENAQAAYDHMMSGKARFRVVLKVNE"
     gene            complement(299..712)
                     /locus_tag="VEQ16_11065"
     CDS             complement(299..712)
                     /locus_tag="VEQ16_11065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014241320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HYP64424.1"
                     /translation="MRITRIGSQPSGKGSADYFTGTVRIDPLFQAGSPARAGGANVTF
                     EPGARTAWHTHPLGQTLIVTAGCGRVQLEGGPVQIIRPGDVVWIAPHERHWHGAAPTT
                     AMTHIAIQEQLHGSAVTWLEHVTDAEYEAAAQEPA"
     gene            904..1821
                     /locus_tag="VEQ16_11070"
     CDS             904..1821
                     /locus_tag="VEQ16_11070"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HYP64425.1"
                     /translation="MPVNPQFSMILPMLPQAIAMSRAIAEGKMAPLDIQPGMMGPVTK
                     VAHVEDRALETAEGLVPLRIYTPRTDAKLPLVLFFHGGGFVSGDVNTHDELTRQLALA
                     ADAVVLSVSYRLAPAHPFPAALHDCLAALEWGVAHAAEIGADASRLAVAGDSAGGNLA
                     AVVAQYLRDKGGVKLAAQLLIYPSTDFSGAPTGSMLESGEGFYISREDMEYYHESYIG
                     GADAGDPYISPLKAKTLADLPPAFVLTAQYDPLRDQGQAYAKRLAEEGVPVEFVNYED
                     AIHGFLSFPVPLGKEAIEHCGVWLKARLG"
     gene            complement(1882..2943)
                     /gene="selD"
                     /locus_tag="VEQ16_11075"
     CDS             complement(1882..2943)
                     /gene="selD"
                     /locus_tag="VEQ16_11075"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019462831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0016260 - selenocysteine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HYP64426.1"
                     /translation="MADAEPRLTSLAHGGGCGCKLSPAVLRELLSGMPLANAFPDLLV
                     GIETGDDAAVYKVNDNQAVVATTDFFMPIVDDPFDFGRIAAANALSDIYAMGGKPILA
                     LAILGMPLGKISPERVRAILEGGASVCAEAGIPVAGGHSIDSPEPIYGLAVVGLVNPD
                     RVLRNNGAQAGDALLLSKPLGVGIISAALKAGKLDEAQERALYGALVGATTRLNAVGH
                     ELAELPAVHAVTDVTGFGLLGHGLEICRGSKLAARISFGDLPLLPFIADLARIPYRTG
                     AAVRNWGSYGEEVELAPGLEEWQRDIMADPQTSGGLLVAVAPEGAEAALAQLRAAGFA
                     QAAMIGRLEEGGSRIFAGV"
     gene            3031..>4372
                     /gene="selA"
                     /locus_tag="VEQ16_11080"
     CDS             3031..>4372
                     /gene="selA"
                     /locus_tag="VEQ16_11080"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004125 - L-seryl-tRNA(Sec) selenium
                     transferase activity [Evidence IEA];
                     GO_process: GO:0016260 - selenocysteine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HYP64427.1"
                     /translation="MPEDENLFRSLPQLQKLLELPAAEALCAAYGRAAVTSALRDGLA
                     GLRAEIGAGAVTEVPDALALLARAELQLAARQRRGLRRAINATGIVLHTNLGRAPLAE
                     EAIEAVADVAAGYCNLEFDLSSGKRGSRTQALEPLLRELTGAEAALAVNNGAAAILLV
                     LSALSAGAEVIVSRGELVEIGGGFRVPDVIRQGGARLVEVGATNKTRLEDYRAAITPE
                     TRVLLKVHQSNFRTIGFTAEASMEELAGLAHECSLLLVADLGSGLLHETPGSAERTLG
                     QVLAVGADIVTCSGDKLLGGPQAGLILGKAAALDKIRKHPLLRAVRLDKMSLAALEAT
                     LLLHRDRPERVPVYAMLHQTNADLRQRAEQLLELLGSGALERTEAFAGGGSLPEERIE
                     SWAVALTPPQGAAAASVALRGGTPAVIGRISEGRLLLDMLAVSDAEIPVLAARLR"
BASE COUNT          747 a         1290 c         1544 g          791 t
ORIGIN      
        1 acgatgatgg tgattggcgc agttggtaat ctcacggtca attcgctgga gcttctgggc
       61 aagagcgcgg cagtgcgtgg ctggtattcc ggcacggcgg cggattcgga agatacgctg
      121 ctgttcagcg aactgaacaa gatcagctct atgaatgaga tttttccgct ggaaaatgcc
      181 caggccgcct atgaccacat gatgagcggc aaggcccgct tccgcgtggt gctgaaggtg
      241 aacgaataaa attttttatt cttttttggg aataagatgc agcgtcagcc gggcggcatc
      301 aggcgggctc ctgcgccgcg gcttcatatt ccgcatccgt gacatgctcg agccaggtga
      361 cggcgctgcc atggagctgc tcctggatgg cgatatgggt catggcggtg gtgggcgcgg
      421 cgccatgcca atggcgctca tgcggcgcga tccagaccac gtcgcccgga cggatgatct
      481 gcaccggccc gccttccaac tgtacgcgcc cgcagccggc ggtgacaatg agcgtctgac
      541 ccagcggatg ggtatgccag gcggtgcggg caccgggctc gaaggtgaca ttggcgccgc
      601 cggcgcgagc cgggctgccg gcctggaaca gcgggtcgat gcggaccgtg cccgtgaaat
      661 aatccgccga gcctttgccg gacggttgtg aaccgattct ggtaatgcgc atggtgatcc
      721 cctcgttcgc tatggcgcgc ttgatgtagg ccgctccggc cggcagtttt agtggggttg
      781 ccggactagg gcttataagc accattcatg aataggccgg ggctggtttt gcgggaattt
      841 gtgaattagg cttgtttcag gtccgctctt tatgtccggc aagagaacga aaaggggaga
      901 agcatgcctg tcaatccgca attttctatg atcctgccga tgctgccgca ggccattgca
      961 atgtcgcgcg ccatcgcaga gggaaagatg gcgcctttgg acattcagcc gggcatgatg
     1021 gggccggtga cgaaggtggc gcatgtggag gacagggcac tggagacggc ggaggggctg
     1081 gtgcccttgc gcatttacac gccgcgcacg gatgcgaagc tgccgctggt gctgtttttt
     1141 catggcggcg gcttcgtttc gggtgatgtg aacacgcatg acgagctgac gcgtcagctg
     1201 gctctggcag cggatgcggt ggtgctgtcc gtgtcctaca ggctggcgcc ggcacatcct
     1261 ttcccggcgg cgctgcatga ctgcctcgcg gcgctggagt ggggtgtggc acatgcggcg
     1321 gagattggcg ccgatgcgtc ccgccttgcc gtggcggggg acagtgcggg cggcaatttg
     1381 gccgctgtgg tggcgcaata tctgcgcgac aaaggcgggg taaaactggc ggcgcagctg
     1441 ctcatttatc cgagcaccga tttttccggg gcgcccacgg gctcgatgct ggagagcggc
     1501 gaggggtttt atatcagccg ggaagatatg gaatattatc atgagagcta tattggcggg
     1561 gcggatgccg gcgacccgta tatctcgccc ctgaaagcga aaacgctggc ggatttaccg
     1621 ccggccttcg tgctgacggc acaatatgac ccgttgcgtg accaggggca ggcttatgcg
     1681 aagcgtctgg cggaagaggg cgtgccggtt gagttcgtga attacgagga tgcgatccat
     1741 ggttttctct ccttccctgt gccgctgggg aaggaggcga ttgagcattg cggggtttgg
     1801 ttgaaggcgc ggttgggtta gggttttcac ttcgccctgt tcgaggctgc caccctggtc
     1861 aaggccgagg tgaggccagc ctcaaacccc ggcaaaaatc cgcgaccccc cttcttccag
     1921 ccggccgatc atcgccgcct gggcaaagcc ggcggcgcgc agttgcgcca gcgccgcttc
     1981 cgccccctcc ggtgccaccg caaccagcag cccgccgctg gtctgcgggt cggccatgat
     2041 gtcgcgctgc cactcctcaa ggccgggcgc gagctcaacc tcctcgccat agctgcccca
     2101 gttccgcacc gccgcgccag tgcggtaggg aatgcgggcc agatcggcaa tgaagggcag
     2161 caggggcaaa tcgccgaagc tgatgcgggc ggcgagtttc gagccgcggc agatttccag
     2221 cccatggccg agcaggccga agccggtgac atctgtcacc gcgtgcacag cgggcaattc
     2281 ggccagctca tgccccaccg cgttcagccg cgtggtggcg ccgacgagcg cgccataaag
     2341 tgcccgttcc tgcgcttcat ccagcttgcc cgccttcagc gcggcgctga tgatgccgac
     2401 gccgagcggc ttgctgagga gcagagcatc gcccgcctgc gcgccattat tgcgcagcac
     2461 gcggtcggga ttcaccagcc cgaccacggc aagcccgtag atgggctcag gcgaatcgat
     2521 ggaatggccg cccgccaccg gaatgcccgc ttccgcgcaa accgaggcgc cgccttccaa
     2581 tatggcgcgc acgcgttcgg gggagatctt gccaagcggc atgccgagaa tggccaaagc
     2641 taggatcggc ttgccgccca tggcatagat gtccgacagc gcattggctg cggcgatgcg
     2701 gccgaaatcg aacggatcat cgacgatcgg catgaagaaa tccgtggtcg ccaccacggc
     2761 ctgattgtca ttcaccttgt agacagcggc gtcgtccccg gtctcgatac cgaccagcag
     2821 gtcggggaaa gcattggcca gaggcatgcc ggacagcagc tcgcgcagca cggcggggga
     2881 gagtttgcag ccacagccgc cgccatgggc gagtgaggtc agcctgggtt ccgcatcggc
     2941 catggtttaa cgcccctcaa agctctattc tgttgcttca cacagcatta gcattcacgg
     3001 aacaagcaaa acagccccga ggaactgccc ttgccagagg acgaaaatct cttccgcagc
     3061 ctgccccagc tgcaaaaact gctcgaattg ccggcggcgg aggcgctatg cgcggcctat
     3121 ggccgggcgg ccgtgaccag cgcgctgcgt gacgggttgg ccggcctgcg ggcggagatc
     3181 ggcgccgggg cggtgacgga agtgcctgat gcgttggcgc tgctggcgcg ggcggagctg
     3241 caattggcgg cgcggcagcg gcgcgggctg cgccgggcca tcaatgccac cgggatcgtg
     3301 ttgcacacca atcttggccg cgcgccgctg gcggaggagg ccatagaggc ggtggcggat
     3361 gtggcggccg gctattgcaa tctggaattc gaccttagct ccggcaagcg cggttcgcgc
     3421 acccaggcgc tggaaccgct gctgcgcgag ctgaccggcg ccgaggcggc gctcgcggtg
     3481 aataatggcg ctgcggccat tctcctggtc ctcagcgcac tgagtgccgg cgcagaagtc
     3541 atcgtttcgc gcggggagct ggtggaaatc ggcggcggct ttcgcgtgcc ggacgtcatc
     3601 cgccagggcg gcgcgcggct ggtggaggtg ggggccacca acaagacgcg gctggaggat
     3661 tatcgcgccg ccatcacgcc ggagacgcgc gtgctactga aagtgcatca gagcaatttc
     3721 cgcaccatcg gctttacggc ggaggccagc atggaggagc tggccgggct ggcgcatgag
     3781 tgctcgctgc tgctggtggc ggacctcggc agcgggctgc tgcatgagac gcccggcagc
     3841 gccgagcgga cattggggca ggtgttggcg gtgggagcgg acatcgttac ctgcagtggc
     3901 gacaagctgc tgggcgggcc gcaggccggg ttgattctgg gcaaggcggc ggcgctggac
     3961 aaaatccgca agcatccttt gctgcgcgcg gtgcggctgg acaaaatgtc gctcgccgcc
     4021 ctggaggcaa ccttgctgct gcatcgcgac cggccggaac gtgtgccggt ctatgccatg
     4081 ctgcaccaga ccaatgcgga tttacggcag cgggcggagc agctgctgga gctgctgggc
     4141 agtggcgcgc tggagcggac ggaggctttt gccggtggcg gctccctgcc cgaggagaga
     4201 attgaaagct gggccgtggc actgaccccg ccgcagggtg ctgcggccgc gtccgtcgct
     4261 ctgcgtggcg gtaccccggc cgtaatcggc cgcattagcg agggacggct gctgctggat
     4321 atgctggcgg tgagtgacgc agaaatcccc gtgttggcgg cgcggctgcg gg
//
LOCUS       DASQCV010000707         3273 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1310960, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000707 DASQCV010000000
VERSION     DASQCV010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3273
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1310960"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..448)
                     /locus_tag="VEQ16_11085"
     CDS             complement(<1..448)
                     /locus_tag="VEQ16_11085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64428.1"
                     /translation="MPRPLTILAHSGYDTETVRTGLGAPQYSYHFVLMGFLPALEQLG
                     TVVRVRTPEEVDPLYDACLAKGEDCVFLCFAPPHLVPLTLRCPTIPVVAWEFSNIPCV
                     MWSEDPRSDWRLVFRHCGRAITLCQYTANVVREAMGSDYPVFVVPTA"
     gene            complement(698..1654)
                     /locus_tag="VEQ16_11090"
     CDS             complement(698..1654)
                     /locus_tag="VEQ16_11090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin family protein"
                     /protein_id="HYP64429.1"
                     /translation="MRDFSELSEREVLALAIGAEEEDSRIYLDLAERLREDFPASAHM
                     FIEMAEEESGHRHRLLDLYREKFGEHIPLIRRQDIRGFLTRKPVWQLPKPSIEDVRLL
                     AETMETETKRFYRMAASRTTDVSIRKLLGDLAEAEQEHEIRADEIVNKNLTAEARRGE
                     DAHARQLFVLQFIQPGLVGLMDGSVSTLAPIFAAAFSTHNTHAAFLVGAAAALGAGIS
                     MGFAEALSDDGSLTGRGAPLMRGLVTGAMTTVGGLGHTLPFLIPNLRIALIVAFCVVA
                     IELAAISWVRWRFMDTSPIRATLQVALGGALVFATGILIGAG"
     gene            1900..>3273
                     /locus_tag="VEQ16_11095"
     CDS             1900..>3273
                     /locus_tag="VEQ16_11095"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HYP64430.1"
                     /translation="MRCCALDVSALPLPENATLLDTQGNEATKLFNERKYAEAEALAQ
                     QVLDVAPNQRIALRVLFEIRKAQNKHEATTALGKRLSALPGPANLRAQANIQFAQYLV
                     AQGRHEDALPIAAAALKATPKDATAQHVMGVVLTETGSVLEGEAHYRKALKLLGASDG
                     LVLANLAWNLKLQGRLDEAAEIYDTALAIRPENKRGVGGQAQVEFGRGRRGKSVAVLD
                     AALARWSDDRTLRLLRAMADIAMRQPQAALDRLGPAEGLLAPEVLARAQAFAQLGQLP
                     DSVNAWATARRMQRELVYRPEPLLARASSYKAYFTADRVQVLPRARTGAHASDAKPGA
                     FTPVFLLGFARAGSSLLEQLLAQLPGFAAADEFAPIGELAGIIPRLAGTEAAYPEALD
                     DLLVGENLEQPDRLRALYETRRAKLGLVRPGVRFITDRGLTNFWHIGLIKLLYPEAPI
                     IHVLRHPY"
BASE COUNT          613 a          985 c         1082 g          593 t
ORIGIN      
        1 tcgcggtggg gacgacgaag actgggtaat cagaccccat agcctcgcgg acgacgttgg
       61 cggtgtactg gcacagcgtg atggcgcggc cgcaatggcg gaacaccagg cgccagtcgg
      121 agcgcgggtc ttcgctccac attacgcagg gaatgttgga gaattcccac gcgaccacgg
      181 gaatggtggg gcagcgcagg gtgaggggca ccagatgcgg cggcgcgaag cagaggaata
      241 cacaatcctc gcccttggcc aggcaagcat cgtagagcgg gtccacctct tccggtgtgc
      301 gcacccgcac caccgtgcca agctgctcga gcgccggcag aaaccccatc agcacaaaat
      361 gatagctata ttgcggcgca cccagaccgg tccgcacggt ctcggtgtcg tagcccgaat
      421 gtgcaaggat ggtcagaggc ctaggcaatg tgcgctaatc ccagactcag aatttcgatc
      481 cccattcctt gtttccgtct tttgctgtgt gagtccaact ctgagcacag aaatacattt
      541 tcccggatcg cgtcaattga ttcggcgaga gtaatgctgg cgccgtgagg ataacgccgt
      601 gccggtgcat atcggaaccg gcacgtttga acacgctttg attgtttaat attctttaat
      661 cttactactt atggttcagt atagcagtcg ccggggtcta tccagcgccg atgaggatgc
      721 cagtggcaaa caccagcgcg ccgccgaggg cgacctgcag cgtggcgcgg atgggggagg
      781 tgtccatgaa acgccagcgc acccaggaga tggcggccag ctcgatggcc accacgcaga
      841 aggcgacgat gagggctatg cgcagattgg gaatgaggaa gggcaatgtg tggccgagcc
      901 cgcccacagt cgtcatggcc ccagtgacga ggcctctcat gagaggcgcg ccccgcccgg
      961 taagcgagcc gtcatcggac aacgcctcgg cgaagcccat ggaaatgccg gcgccgagtg
     1021 ccgccgccgc acccaccagg aaagcggcat gggtgttgtg ggtggagaag gcggcggcga
     1081 aaatcggcgc caaagtggaa accgagccgt ccatgagccc gaccagcccg ggctggatga
     1141 attgcagcac gaaaagctgg cgggcatgcg catcctcgcc ccgcctggcc tcggcagtga
     1201 ggttcttgtt tacaatctcg tcggcgcgga tttcatgttc ctgctcggcc tcggcgaggt
     1261 cgccgagcag cttgcggatg gacacatccg tggtccgtga ggcggccatg cggtagaagc
     1321 gcttggtttc cgtctccatg gtttcggcga ggaggcgcac atcctcgatg ctgggtttgg
     1381 gcagctgcca gaccggcttg cgggtgagga agccgcgtat atcctggcgg cggatgagcg
     1441 ggatatgctc gccgaatttc tcgcggtaga gatcgagcag tctgtgccga tgcccgctct
     1501 cctcctcggc catctcgatg aacatatgcg cggaggcggg gaaatcctcg cgcaggcgtt
     1561 cagccaggtc gagatagatg cggctatcct cctcctccgc gccgatcgcc agagccagca
     1621 cctcgcgctc ggataattcg gaaaaatctc gcattgcagc atactccttg cccgcccgta
     1681 tctggtcccg cgggccggtc aggtcaagca aatcatatcc ttgtgagaat gagagttgtt
     1741 cgcgctaagc cttgggaaaa cagcgattta aggggggtag agggcgcgtt gccggaggtt
     1801 gcaaagcctg tattatgcgc cggcaaccaa cgggtaaaag cggtgactga gttgaaatta
     1861 aaaacaaacc cgtgcccgtg cggtagtggg ttgcgtgccg tgcggtgttg cgcgctggat
     1921 gtatccgccc tgccattgcc ggagaatgca accctgttgg acacgcaggg caacgaggcg
     1981 accaaactct tcaacgaacg gaaatatgcc gaggccgaag ccctggccca gcaagtgctg
     2041 gatgtggcgc cgaatcagcg cattgcgctg cgcgtgctgt tcgaaatccg caaggcgcag
     2101 aacaagcatg aggccacgac cgccttgggc aagcgcctct ccgccctgcc ggggccggcg
     2161 aatttgcggg cccaggccaa tatccaattc gcgcaatatc tggtggcgca aggacgccat
     2221 gaggacgccc tacccattgc cgcggccgcg ctgaaggcca ccccgaagga cgccacggcg
     2281 cagcacgtga tgggtgtggt gctgaccgag acaggttccg tattggaggg cgaggcgcat
     2341 taccgcaagg cgctgaaact gcttggcgcc agtgacgggc tggtgttggc caatctggcc
     2401 tggaatttga agctgcaggg ccggttggac gaggccgccg agatttacga cactgccttg
     2461 gccatccggc ctgaaaacaa gcgcggtgtg ggtgggcagg cacaggtgga atttggccgc
     2521 ggcaggcgcg gcaagtcggt ggcggtgctg gatgccgccc tggcgcggtg gagcgacgac
     2581 cgcacgctgc gcctgctgcg cgcgatggcg gatatcgcca tgcgccagcc ccaggcggct
     2641 ttggacaggc tgggtccggc ggaaggcctg ctggcgccgg aagtcctggc ccgcgcccag
     2701 gcctttgccc agctcggcca gttgcctgac tctgtgaatg cctgggcgac ggcgcggcgc
     2761 atgcagcgcg agctggtgta ccggcccgag ccgctgctgg cgcgtgcttc gtcctataaa
     2821 gcctatttca ccgccgaccg tgtgcaggtt ctgccccgcg cccggacggg cgctcatgca
     2881 tccgacgcca agcccggtgc tttcactcct gtcttcctgc tcggctttgc ccgcgcgggc
     2941 tccagcctgc tggagcaatt gctggcgcag cttccgggct tcgccgctgc tgatgaattt
     3001 gcgcccatcg gcgagctggc cggcatcatt ccgcgcctcg ccggcacaga ggccgcctat
     3061 ccggaggcgc tggatgatct gctggttggc gaaaatctgg aacagcctga ccggctgcgc
     3121 gccctctacg agaccaggcg cgcgaaactg gggctggtgc ggcccggcgt gcgtttcatc
     3181 accgaccgtg ggctgaccaa tttctggcat atcgggctga tcaagctgct ctatcccgag
     3241 gcgccgatca tccatgtgct gcgccaccct tat
//
LOCUS       DASQCV010000708         2181 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_811238, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000708 DASQCV010000000
VERSION     DASQCV010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_811238"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1263
                     /locus_tag="VEQ16_11100"
     CDS             <1..1263
                     /locus_tag="VEQ16_11100"
                     /inference="COORDINATES: protein motif:HMM:NF018716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1329 domain-containing protein"
                     /protein_id="HYP64431.1"
                     /translation="LGGERAGNADGSIPAWNGGLTGAALPEDQPVVRPVFAGEPPLYQ
                     VSQGNMAQYANLLSDGTQKMITQFGMSLKVYQTHRTAAAPQYVYDNTAKNVTRAVLDP
                     AGGRLGFTGAYGGPPFPIINISDPLVAGAQLIWNHLTAWNGSSYHTAFVPSYVMINGE
                     LILSGGGLVRFMYPYYQPDGSPDDFDGYYSKLHVYYAAPASDVGQEQLVWHSTNVNVD
                     PDIVWTLLNGQGRVRKAPNEAFDTPNPATNGIANMDESSVFYGNPSQYDWTYIGKKEM
                     LVPYNCNEMHQHSAQELMLAHFLNPDIVRWEKHRMWVVEATLHPGENNVNAKRRIYID
                     EDTWYALLGESYDAQGNMVKTYALYNECVPSLPGTTQQAEAAFNVVTGDYMLGGSVTY
                     PPFVADTFIGPQNPTFFEAEAMAASAAF"
     gene            1444..>2181
                     /locus_tag="VEQ16_11105"
     CDS             1444..>2181
                     /locus_tag="VEQ16_11105"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase 87 family protein"
                     /protein_id="HYP64432.1"
                     /translation="MLAGICAAAMVWFPVLTIMALPSVNYNEGWNAYRQWMALQGQKL
                     YGSPPGLWTTNYPFLSFHIVALLSGAKAHMVLAGRVLCFASLVAVSVLAGLIVCEETG
                     SRAAGGYARLCLFAWLGAFNGQGRAMNDPEMLSAACAMLGLYAYVKGQRFLGLAAVAF
                     AFSLFIKHDFIGFPLAVALHLAVSRQWRGLAVFVAVGIAVCGLLLALSYHLDGPYFFP
                     MFLQPRAYLWSNLVAEALHFLLHFAVAL"
BASE COUNT          380 a          602 c          708 g          491 t
ORIGIN      
        1 ctgggcggcg agcgcgccgg caatgcggat gggtccatcc cggcctggaa tggcgggctc
       61 accggggcgg ctttgccaga ggaccagccg gtggtgcggc cggtctttgc cggtgagccg
      121 ccgctctatc aggtgagcca aggcaatatg gcgcaatatg ccaatctgct ctcagacggc
      181 acgcagaaga tgatcacgca gttcgggatg agcctgaaag tgtaccagac ccaccgcacc
      241 gccgcggcgc cgcaatatgt gtacgacaat acggcgaaaa acgtgacgcg ggcggtgttg
      301 gacccggccg gcgggcggct cggctttacc ggcgcctatg gcgggccgcc ttttcccatc
      361 atcaacatat ccgacccgtt ggtggcgggg gcgcagctca tctggaacca cctgacggcg
      421 tggaacggct cgtcctatca taccgccttc gtgccgagct atgtgatgat caatggcgag
      481 ctcatcctct caggcggcgg gttggtgcgc ttcatgtacc cgtattacca gccggatggc
      541 tcgcctgatg atttcgatgg atattacagc aaacttcacg tctattacgc ggcgccggcg
      601 tccgatgtgg ggcaggagca gctggtgtgg catagcacca atgtgaatgt ggatcctgat
      661 atcgtatgga ctttgcttaa tggccagggg cgcgtgcgca aggcgccgaa cgaggcgttc
      721 gacacgccca accccgccac caacggcatc gccaacatgg atgaaagctc ggtcttctac
      781 ggcaaccctt cgcaatatga ctggacctat atcggcaaga aggaaatgct ggtgccgtat
      841 aattgcaacg agatgcacca gcacagcgcg caggagctga tgctggcgca tttcctcaac
      901 ccggacattg tgcgctggga aaagcaccgc atgtgggttg tggaggccac gctgcatccc
      961 ggcgagaaca acgtgaatgc gaagcggcgc atctatattg acgaggatac atggtacgcg
     1021 ctgctggggg aatcttatga cgcccagggc aacatggtga aaacctatgc gctgtacaat
     1081 gaatgtgtgc cctcgctgcc gggtacgacg cagcaggcgg aggcggcgtt caatgtggtg
     1141 acgggggatt atatgctggg cggctcggtg acctatccgc cgtttgttgc ggatacgttt
     1201 atcgggccgc aaaatccgac cttcttcgag gcggaggcta tggcggctag cgcggctttt
     1261 tgaggccagg gctctgccgt cgtgcgaagc acgccttcgg tgtgagacga cccaatgggg
     1321 cgccccccta tggagtcaca gcctctggct caagtagcaa tgcttcgtca cttgaacctc
     1381 tctgtgtgac ctactagcct cgcgcgcgtg acatcagaac gaaaattctg gatcgcggcc
     1441 atcatgttgg caggcatttg tgccgccgcc atggtctggt ttcccgtgct gaccatcatg
     1501 gcgctgccat cggtgaatta taacgaaggc tggaacgcct acaggcaatg gatggcgctg
     1561 caggggcaga agctttatgg cagcccgcct gggctgtgga cgacgaatta tccgtttctc
     1621 tccttccaca ttgtcgccct tctgagcggc gccaaggcgc atatggtgct ggcggggcgg
     1681 gtgctgtgtt ttgcctcgct tgtggcggta tcggtgcttg cgggcctcat cgtgtgcgag
     1741 gagacaggct cgcgtgcggc ggggggttat gccaggctgt gcttgtttgc ctggctcggg
     1801 gccttcaacg ggcaggggcg ggcgatgaat gatcccgaga tgctcagtgc cgcctgtgcc
     1861 atgctggggc tgtatgccta tgtgaaaggg cagcgttttt taggactggc tgccgtggct
     1921 tttgccttca gcctgttcat caagcatgat ttcatcggct ttccgctcgc cgtggcgctg
     1981 catctggcgg tgtcgcggca gtggcgcggg ctggctgtgt ttgtggctgt tggtatcgcg
     2041 gtttgcggcc tgttgctggc tttgtcgtat catctcgacg ggccgtattt tttcccgatg
     2101 ttcctgcagc cgcgcgccta tctctggtct aatctcgtgg cggaggcatt gcattttctg
     2161 ctgcattttg ccgttgcttt g
//
LOCUS       DASQCV010000709         1611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_313116, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000709 DASQCV010000000
VERSION     DASQCV010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_313116"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..749)
                     /locus_tag="VEQ16_11110"
     CDS             complement(<1..749)
                     /locus_tag="VEQ16_11110"
                     /inference="COORDINATES: protein motif:HMM:NF024968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HYP64433.1"
                     /translation="MRSLVWHWGRRGAGPIFAARLAEGIAAVPGQEVVLSLPEAAELL
                     ADPGAPYCAWREPTYGSRLGYLWQRLLNPMLGPRTRGHLLRLRPGVAICAMPALLDGR
                     MLAGLKALSIPYAVIVHDATAHPGEGLSFRAVGQRQTLRGARHVFCLSAHVEAALRRQ
                     GVGENGQGLTKLWHPPMGFAAELPPVSAQARPHLLHFGRLLPYKGLDLLADAMALLGP
                     ARDFELRICGEGPPSEALARLAAMPGVEVENR"
     gene            complement(746..>1611)
                     /locus_tag="VEQ16_11115"
     CDS             complement(746..>1611)
                     /locus_tag="VEQ16_11115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013641098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HYP64434.1"
                     /translation="LLRLPRGSLRGRRVIGFWAWELPAVPPIWAEGAKFVHEIWAPSR
                     FTAAALEKMVPGRVRVVPYPIAAVDLPAEGERADFGLPEGMVIVTTIFNLASSMARKN
                     PLGAIAAFKAAFGMRRDVLFVLKLSHVEAYAEDLALIRAAIGDAPNIRLFTETISEAR
                     LRGLIRASDVVLSLHRAEGFGLVPATAMLLGRAVVATGWSGNMDFMSAETAGLVPYQL
                     VPAEDPRGTYALAGAEWAEPDVEAAASLLRRLADDAAGRAAMAAAGRDYAKVRIGAEP
                     LLAALDAAGVA"
BASE COUNT          327 a          635 c          447 g          202 t
ORIGIN      
        1 cgattctcca cctccacccc cggcatagcc gcgagccgcg ccaaagcctc ggaaggaggg
       61 ccctcgccac agatgcgcaa ttcgaaatca cgcgccggcc ccagcaaggc catcgcatca
      121 gccagcaaat ccaacccctt atagggaagc agccggccaa aatgcagcag atgcggccgc
      181 gcctgcgccg aaacgggtgg cagttcggcg gcaaatccca tcggcggatg ccataatttc
      241 gtcagcccct gcccattttc gcccacgccc tggcggcgca gcgccgcctc cacatgcgcg
      301 ctgagacaga acacatgccg cgccccgcgc agcgtctggc gctggcccac ggcacggaaa
      361 ctcaagccct cgccaggatg tgccgtggcg tcatgcacaa tcaccgcata gggaatggac
      421 aacgccttca acccggccag catacgccca tcgagcagcg ccggcatggc gcagatggcg
      481 acaccgggcc gcaggcgcag caaatgcccc cgcgtccgcg gccccagcat agggttgagc
      541 agacgctgcc acaaataacc cagccggctc ccataggttg gctcacgcca ggcgcagtac
      601 ggcgcgccgg ggtcggccag caactcggcc gcttccggca aagagagcac aacctcctgc
      661 cccggcacgg cggcaatgcc ttcggccagc cgtgcggcga aaatgggccc agccccgcgc
      721 cgcccccaat gccaaaccag gctcctcatg ccacccccgc cgcatccagc gccgcaagca
      781 gcggctcggc gccgattcgc acttttgcat aatcccgccc cgccgccgcc atggccgcac
      841 gccccgccgc atcatccgcc agccggcgca gcaggctggc cgccgcctcc acatccggct
      901 cggcccattc cgcccccgcc agcgcatagg tgccgcgcgg gtcctccgcc ggcaccagct
      961 ggtacggcac cagtcccgcc gtctccgctg acatgaaatc catattcccc gaccagcccg
     1021 tcgccaccac ggcccggccc agcagcatcg ctgtcgccgg gacaagccca aacccttccg
     1081 cgcggtgcag cgacagcacc acatcgctgg cccgtatcaa cccgcgcaga cgtgcctcgg
     1141 aaatggtctc cgtaaagagc cggatattcg gcgcatcgcc tatggcagcg cggatcagcg
     1201 ccagatcctc cgcataggcc tcgacatgag aaagcttcag cacgaacaga acatcgcgcc
     1261 tcatcccaaa cgccgcctta aaagccgcaa tcgcacccag cggattcttg cgtgccatgg
     1321 aagatgcaag gttgaaaata gtggtgacga tgaccatccc ttccggcagg ccgaaatcgg
     1381 cccgttctcc ctccgccggc aaatccaccg cagcaattgg atacggcacc acccgcaccc
     1441 ggccaggcac cattttctcc agcgccgcgg cggtaaagcg cgagggcgcc cagatctcat
     1501 gcacgaattt ggcaccctcg gcccagatgg gcggcacggc aggcaattcc caggcccaga
     1561 agccgatcac acgccgcccg cgcaggctcc cgcgcggcag acgcaacaag g
//
LOCUS       DASQCV010000710         2420 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_811444, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000710 DASQCV010000000
VERSION     DASQCV010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2420
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_811444"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1782
                     /locus_tag="VEQ16_11120"
     CDS             <1..1782
                     /locus_tag="VEQ16_11120"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYP64435.1"
                     /translation="QEVMASRVDYVLAQMVAGDMEVGTTRTLFDLGGPSGIFPCRDGF
                     VYIWMSAPSHWDAIRQLLDDTAWMDDFPANWMERGLTPERIAICRQHITSWLRGMDKE
                     DAAAAAQKLGLTLAPVNNVSDLPRSAQLQHRGFFAEVEHPVQGRALYPTTPYKLSATP
                     ARIEQAAPLLGRHDESALRKRVTDTPTPQSQNRIIKRRGGPLEGVRVLELTKVWAGPC
                     VGKHLAYLGAEVIRVESLGSIDVTRSYGVDDINKAPGFQSVNPQKLSVQIDMKSTDGI
                     ALLKDLISQCDIVVENLRPGAIDRLGLGYEAVKAAHPSVIYVSMGMYGNDGPLAYQTG
                     YAPCFVALSGLSALVGYEGETPEGMNIRYADSSFGTAATYAALAALLHRQQTGEGQFI
                     DLSAVETMTSMIGDVFMDFSLNKCIAQCDGNRHPDMAPHGLYPCTEEDWISIAVPDDV
                     AWRALCKAMEQPALADDPRFHIFPARKANEAALDALLADWTRGRNARELAALLQAQGI
                     AAAKSANSLDLVADDHLWARGFYRYVTDGAGETKATVGPAWRLSDPADITDGAPRLGE
                     HNDYVFGDILRLPVSEQERLKQSGAIR"
     gene            1804..>2420
                     /locus_tag="VEQ16_11125"
     CDS             1804..>2420
                     /locus_tag="VEQ16_11125"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HYP64436.1"
                     /translation="MMTETVTCTLENGLCRLTLNRPEKLNALNLSMFEEMAHHLDRLD
                     YSAVSCLVLSGAGRSFCAGHDLDDLAAGDESGRAERIENGLVERLATLPFPVVASVRG
                     HCYTGGLELVLAADIILAAETARFADTHARFDLVPIWGLTQRLPRRVGMAKAKEIIFC
                     SRTYSGTEAAAMGLANFAVPEAELDAQTDALCADILANSARSNRE"
BASE COUNT          456 a          775 c          760 g          429 t
ORIGIN      
        1 caggaggtga tggcctcgcg cgtggattat gtgctcgcgc agatggtggc gggcgacatg
       61 gaggtgggca ccacccgcac gctcttcgac cttggcggcc cctccggcat tttcccgtgc
      121 cgcgacgggt ttgtttatat ctggatgtcc gcgccctcgc attgggacgc catccgccaa
      181 ttgctcgatg acacggcatg gatggatgat ttccccgcca actggatgga gcgcgggctg
      241 acgccggagc gcatcgccat ttgccgccag catatcacca gctggctgcg ggggatggac
      301 aaggaggatg ccgccgcggc cgcgcagaag cttgggctga cactggcgcc ggtgaataat
      361 gtcagcgatc tgccccgctc ggcgcaactg cagcatcgcg gcttcttcgc tgaggtggag
      421 catcccgtgc aggggcgcgc gctttatccg acgaccccgt ataaactcag cgccacgccg
      481 gcacgcatcg aacaagcggc gccgctgctg gggcggcatg atgagtctgc cctgcgcaaa
      541 cgggtaacgg atacaccgac gccgcagagc cagaacagaa tcatcaaacg ccgcggcggg
      601 cctctggaag gcgtgcgcgt tttggagctg acgaaagtct gggccgggcc atgcgtgggc
      661 aagcatcttg cctatctcgg cgcggaagtc atccgcgtgg aaagcctagg ctccatagac
      721 gtgacgcgct cttacggggt ggacgacatc aacaaggcgc cggggttcca gtcggtcaat
      781 ccacaaaaac tcagcgtgca gatcgatatg aaatcgaccg acggcatcgc gctcctgaaa
      841 gacctcatca gccaatgcga catcgtggtg gagaatctcc ggcccggcgc catcgaccgg
      901 ctcgggctcg gctatgaggc cgtaaaggcg gcgcatccca gcgtcattta tgtctcgatg
      961 ggcatgtacg gcaatgacgg accgttagcc tatcaaacgg gctatgctcc ctgcttcgtg
     1021 gcgctgagcg gcctctccgc cctggtgggc tatgaaggcg agacaccgga agggatgaat
     1081 atacgctatg ccgattccag cttcggcacc gccgccacct atgccgcgct cgcagcacta
     1141 ctgcaccgcc aacaaacggg cgaaggccag ttcatcgatc tctccgccgt cgaaaccatg
     1201 acgagcatga tcggcgatgt cttcatggat ttcagcctga acaaatgcat cgcgcaatgc
     1261 gacggcaacc gccatccgga catggcaccg cacgggcttt atccctgcac ggaggaagac
     1321 tggatcagca tcgccgtgcc tgatgacgtt gcctggcgcg cgttgtgcaa agcgatggag
     1381 cagcctgcat tggccgatga cccgcgtttc cacattttcc ccgcccgcaa ggcgaatgaa
     1441 gcggcgttgg acgcgctgct ggcggactgg acgcgcgggc gtaacgccag ggagcttgcc
     1501 gccctcctgc aagcccaagg catcgccgcc gccaagagcg ccaattcgct cgatctcgtc
     1561 gcggatgatc atctctgggc gcgcggcttc taccgctatg tcacggatgg cgcgggcgag
     1621 acgaaagcca cggtcggccc cgcctggcgc ctgagcgacc ctgccgatat caccgatggc
     1681 gcgccgcgcc tcggcgagca taatgattac gtgttcggtg acatactccg cctgccggtt
     1741 tcggagcagg agcggctgaa acagagcggc gccatacgct gattttcgaa atttcgagga
     1801 taaatgatga ccgaaactgt cacctgcacg ctcgagaacg gtctttgccg gctcaccctg
     1861 aaccggccgg agaaactcaa cgcgctgaat ctgtcaatgt tcgaggaaat ggcgcatcat
     1921 ctggaccggc tcgattacag cgctgtcagt tgcctggtgc tcagcggcgc cgggcgcagt
     1981 ttctgcgcgg ggcatgacct ggacgatctc gccgccggcg atgagagcgg ccgcgccgag
     2041 cgcatcgaga acggcctcgt cgagcggctc gccactttgc ccttccccgt cgtcgcctcc
     2101 gtacgcggcc attgctatac gggcgggctg gagctggtgc tggcggcgga catcatcctc
     2161 gccgccgaga cggcgcgctt tgccgatacc catgccagat tcgacctggt gccgatctgg
     2221 ggcctcaccc agcgcctgcc gcgccgtgtc ggcatggcca aggccaagga aataatcttc
     2281 tgttcgcgca cctattcggg cacggaggca gccgccatgg gactcgccaa tttcgccgtg
     2341 ccagaggcgg agctggacgc gcagaccgat gcgctctgcg ccgatattct cgccaacagc
     2401 gcccgctcca accgcgaaat
//
LOCUS       DASQCV010000711         4513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2140643, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000711 DASQCV010000000
VERSION     DASQCV010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4513
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2140643"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..342)
                     /gene="purH"
                     /locus_tag="VEQ16_11130"
     CDS             complement(<1..342)
                     /gene="purH"
                     /locus_tag="VEQ16_11130"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493611.1"
                     /note="involved in de novo purine biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HYP64437.1"
                     /translation="MSDIVPIRTALISASDKTGLIDFCRALEEHGIKILSTGGTAKAI
                     REAGIPVTDVSDHTGFPEILDGRVKTLVPQVHGGILGRRTVPEHVAQMNEHKIAPIDL
                     VAVNLYPFEATV"
     regulatory      complement(361..446)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01750"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="ZMP/ZTP riboswitches appear to regulate genes
                     involved in one-carbon metabolism; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="5-aminoimidazole-4-carboxamide
                     ribonucleotide (ZMP)/
                     5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl
                     5'-triphosphate (ZMT)"
                     /db_xref="RFAM:RF01750"
     gene            673..1371
                     /locus_tag="VEQ16_11135"
     CDS             673..1371
                     /locus_tag="VEQ16_11135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64438.1"
                     /translation="MIYFLHIPKTAGTSMRRLFTTGKSQDEIAYVYLPPDGWELEALY
                     AAPRRRIERLRLLFGHFHYGVDQHLKRPGQYLTCLRETASRLTSNYWQHVRGGFVGEM
                     GLLDYFNEWKPKDMDNYAVRLLAGLGHNAPFGGVTEAHLAQAMWNLRHGFAAFGLYEY
                     LPETVARFRQVLGLGHMAIGQDNVTPLSQRQERLPVAEVAALVRHNALDEALYAYAKT
                     LFLARGAGGEAAVA"
     gene            1441..1896
                     /locus_tag="VEQ16_11140"
     CDS             1441..1896
                     /locus_tag="VEQ16_11140"
                     /inference="COORDINATES: protein motif:HMM:NF016701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016846 - carbon-sulfur lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HYP64439.1"
                     /translation="MSAMGSCECGAVNYTLTGNADVYACHCLNCQTRTGSAFAEHAMI
                     HVSQFECRGATVAYERSVGGVASKEVFCRTCHTRIFNMTSALPELIILCAGTMAGSQP
                     LEPVAHIWAKRKQAWLSLPEGVPVFDESPTPEQFRVVLQAAQKRRSGES"
     gene            complement(1901..2659)
                     /locus_tag="VEQ16_11145"
     CDS             complement(1901..2659)
                     /locus_tag="VEQ16_11145"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007002605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004057 - arginyl-tRNA--protein
                     transferase activity [Evidence IEA];
                     GO_process: GO:0016598 - protein arginylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HYP64440.1"
                     /translation="MSFKPARRPHFFYTTAPLPCPYVPGRTERKVVTELSGVTAETLH
                     DKLSRGGFRRSHNIAYAPVCPSCNACVPIRIRATAFAPSRTQKRIWRANEDMAVQEMP
                     PRATAEQYQLFQTYQRQRHGEGDMATMSFYDYRAMVEDTPIETSVIEFRLPSGQLAGA
                     CLTDRLGDGLSAVYSFFDTGLNPRSLGTFAIMWLVSRAVELELPHVYLGYWVEESRKM
                     AYKAKFRPSEILRAGQWIPLEAAHTGAASLVTVG"
     gene            complement(2694..3143)
                     /locus_tag="VEQ16_11150"
     CDS             complement(2694..3143)
                     /locus_tag="VEQ16_11150"
                     /inference="COORDINATES: protein motif:HMM:NF018028.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HYP64441.1"
                     /translation="MSQTILPSDPSVSIGVLPRRFIALILDWILIGLLGWAAAFFIVI
                     FGILTLGVGWLFFHIMPAIPFAYYTLLIGGSGATPGQRAMGLTVRQDVGLAHPTLPQA
                     FVWSLLQAVSFVLACVPFLLMLLNPRHRAAHDILSGLTILRAGRIPY"
     gene            complement(3118..4275)
                     /locus_tag="VEQ16_11155"
     CDS             complement(3118..4275)
                     /locus_tag="VEQ16_11155"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 87 protein"
                     /protein_id="HYP64442.1"
                     /translation="MMSPAAPAKPRRVLFAAVLALCGTLNGLVLAYILVRHPFLNQDF
                     LGFWAYPRFTPLPDIYQPEAMMRFQQALYPGFGSFYPFTYPPDVLLLTGWLRALPYNA
                     ARAIWLLAGLCCFAAAGWAFLRRRAGVLALLASPAALLCIVLGQSSFFIGALLLGGLA
                     ALPRRPILAGLLFGLLTIKPQMGLLLPFLLLALGQWRAIAAATVTAALLVALSALVLP
                     AQLWRLWLASLPQIQHDYFSGSTNLNIMITPAANALHLGAPPHLALALQAACTLAAAI
                     CVWAAARRGTYQAAVAVLLAASFIAQPHAYAYDLVTLPAALMLGLRRAPALAQALGLV
                     LYIAPLLLFSPWAGYFCAAPFLAALLAVLTRLALQPPEGAISPHVANHPAL"
     gene            4373..>4513
                     /locus_tag="VEQ16_11160"
     CDS             4373..>4513
                     /locus_tag="VEQ16_11160"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HYP64443.1"
                     /translation="MAFVEFGNPAAPALVCVHGLTRNGRDFDALAEALEDRFHVICPD
                     LPG"
BASE COUNT          896 a         1216 c         1620 g          781 t
ORIGIN      
        1 gacggtggct tcgaacgggt agagattgac cgcgacgaga tcgatgggcg cgatcttgtg
       61 ctcgttcatc tgcgcgacgt gctcgggcac ggtgcggcgg ccgaggatgc cgccatgcac
      121 ttgcggcacg agggttttca cgcggccatc gaggatttcg gggaagccgg tatggtccga
      181 cacgtccgtg accgggatgc cggcctcgcg gatcgccttt gccgtgccgc cggtggagag
      241 gattttgatc ccatgctctt ccagggcgcg gcaaaaatcg atgaggccgg tcttgtcgga
      301 ggcggagatg agggcggtgc gaatgggcac gatgtcggac actggaaaaa ctcctatgct
      361 gatcggtgcc caggcgcgcg gcgaattttt ggtcctcccg cgctccccgg tggtgatcca
      421 cctttgcgcc agtcacgcgg aatggggcgc ggtttggcat ggcgggggcg gcgatgcaag
      481 gcggcgcgct cctgtacggc gcattgcgtg gcgcggcgag agcgagatta ttttgaatcc
      541 ggtgatattt caaaaaaagt actacgatct atacgtggga taatgtaaca gaatttagga
      601 atctaacaga aaattataac ttgagttaca atttgatgac aaagatttag ggaaactatg
      661 ctgtcataaa gtatgattta ctttctgcat atccccaaga cggctggcac ctcgatgcgg
      721 cgccttttta ccaccggcaa atcacaggat gagatcgcct atgtgtatct tccgcccgac
      781 gggtgggagc tggaggcgct ttatgccgcg ccgcggcggc gcatagagcg gctgcggctg
      841 ctgttcgggc atttccatta tggcgtggac cagcatttga agcggccggg gcaatatttg
      901 acctgcctgc gcgagacggc gtcgcgcctg acctccaatt actggcagca tgtgcggggc
      961 gggtttgtcg gcgaaatggg gctgctggat tatttcaatg aatggaagcc gaaggatatg
     1021 gataattacg ctgtacgcct gctcgccggg ctggggcata atgcgccgtt cggcggggtg
     1081 acggaggcgc atctggcgca ggccatgtgg aatctccggc atggattcgc ggcgtttggg
     1141 ctatatgaat atctgccgga aacggtggcg cgcttccgcc aggtgctggg gctgggacac
     1201 atggcgatcg ggcaggataa tgtaacgccg ctttcgcagc ggcaggagcg gcttccggtg
     1261 gcggaggtgg cggctttggt gcggcataac gcgctggatg aggcgcttta cgcctatgcc
     1321 aagacgctgt ttctggcgcg cggcgcgggg ggagaggcgg cggtggctta agccacgccc
     1381 ggcaatagcg cgggttgcac cgccatagta gggttgaagc catattatgg ggagcggtgc
     1441 atgtccgcga tgggaagctg tgaatgtgga gcggttaact atacactgac gggcaatgcc
     1501 gatgtctatg cttgtcattg cctcaattgc cagacgagga ccggcagtgc cttcgcggaa
     1561 catgcgatga tccatgtttc tcagttcgaa tgccgggggg ccaccgtcgc gtatgaacgt
     1621 agcgtgggcg gtgtggcgtc caaggaggtg ttttgccgca cctgccatac gcggattttc
     1681 aacatgacca gcgcgcttcc tgaattgatt atcctgtgcg ccggcaccat ggccgggagc
     1741 cagccgctgg agccggttgc gcatatctgg gccaagcgga aacaggcctg gctctctttg
     1801 cccgagggtg tgcctgtttt tgatgagtcg cccacgcctg aacagtttcg cgtagtgctt
     1861 caggccgcgc aaaagcgccg gtcaggcgaa agctgacggg ctagcctacc gttaccagcg
     1921 aggccgcgcc tgtgtgcgcg gcttccagcg ggatccattg cccggcgcgc agaatctcgc
     1981 tggggcggaa cttggctttg taggccatct tgcggctctc ctcgacccag tagccgagat
     2041 agacatgcgg cagttccagt tccaccgcgc ggctcaccag ccacatgatg gcgaaggtgc
     2101 cgagggagcg tgggttcagg ccggtatcga aaaatgagta gacggcggag aggccgtcgc
     2161 ccagccggtc tgtaagacag gcgccggcga gctggccgga gggcaggcgg aattcgatca
     2221 ccgaagtctc gatgggcgtg tcctccacca tggcgcggta atcgtagaaa ctcatcgtcg
     2281 ccatgtcgcc ctcgccatgg cgctggcgct gataggtctg gaacagctgg tactgctcgg
     2341 ccgtggcgcg gggcggcatt tcctgcacgg ccatgtcttc attggcgcgc cagatgcgct
     2401 tctgcgtgcg gctgggggcg aaggccgtgg cgcggatgcg gatgggcacg caggcattgc
     2461 agctggggca gaccggcgca taggcgatat tgtggctgcg gcggaaaccg ccgcgggaga
     2521 gcttgtcgtg cagtgtttcc gccgtcacgc cggagagttc ggtgacaact ttgcgctctg
     2581 tgcggcccgg cacatagggg cacggcaagg gggccgtggt gtagaagaaa tgcgggcggc
     2641 gggcgggctt gaagctcatt tctatctaat ctttgggtct ccgttccccc gcgtcaataa
     2701 ggaatccgtc ctgcgcgcag aatcgtaagg ccggagagga tatcatgcgc ggcgcggtga
     2761 cgcgggttga gcagcatcag caggaagggc acgcaggcaa ggacgaagct gaccgcctgc
     2821 agcaggctcc aaacgaaggc ctgcggcaaa gtagggtggg ccaagcctac atcctggcgg
     2881 acggtcagcc ccatggcgcg ctggccgggc gtggcgccgg agccgccgat gagtagcgtg
     2941 taataggcaa acgggatggc gggcatgatg tggaagaaaa gccagcccac gccgagggtc
     3001 aaaatcccga aaatgacgat gaagaaggcc gctgcccagc cgagcaggcc gatgaggatc
     3061 caatcgagaa tgagtgcgat gaagcggcgc ggcagcacgc cgatgctcac cgaaggatca
     3121 gagggcagga tggtttgcga catgaggcga tattgcgcct tccgggggct gcagcgcaag
     3181 ccgggtcagc acggcaagga gcgccgccag gaacggagcg gcgcaaaaat atccggccca
     3241 gggggagaac aggagcagcg gggcgatgta caggaccagc cccagcgcct gggccaaggc
     3301 gggggcgcgg cgcagcccga gcatcagtgc ggcgggtaga gtgacgaggt cgtaggcata
     3361 ggcgtgcggc tgggcaatga aggatgcggc gagcagcacc gcgacggcgg cctggtacgt
     3421 cccgcgccgc gccgcggccc agacgcaaat ggctgccgcg agggtgcagg ctgcttgtag
     3481 cgccaaggcg agatgcggcg gcgcgcccag atgcagcgca ttggccgcgg gggtgatcat
     3541 gatgttgaga ttggtgctgc cggaaaaata atcatgctgg atctgtggca gagaggcgag
     3601 ccagaggcgc cagagctgcg cgggcagcac cagggcggag agcgccacca acagcgcggc
     3661 ggtgacagtg gccgcggcaa tggcgcgcca ttgccccagc gccaggagca aaaacggtag
     3721 aagcagcccc atttgcggct tgatggtgag cagcccgaac agcaggcccg ccaggatggg
     3781 ccggcgcggc agggcggcga ggccgcccag cagcaacgcg ccgatgaaga aggaactttg
     3841 cccgagcacg atgcacagca aggcagccgg gctggcgagc agcgccagca cgccggcgcg
     3901 cctacgcaaa aacgcccagc cggcggcggc gaagcagcac aagcccgcta gcagccagat
     3961 ggctcgtgcc gcattgtagg gcagggcacg cagccagccg gtcaggagca gaacatcagg
     4021 cgggtaggtg aaaggataaa aactcccgaa gccgggataa agcgcctgct ggaagcgcat
     4081 catggcctct ggctggtaga tatccggcaa gggggtgaag cgcggatagg cccagaagcc
     4141 gagaaaatcc tggttaagga aagggtgacg aacgaggatg taagccagca ccagtccatt
     4201 cagcgtgccg cacagcgcca gcacggcggc aaaaaggaca cggcgaggct tggcgggggc
     4261 ggcgggagac atcatttaag cactagatga gcttatgatt cgggtcgatg ggggagagca
     4321 gatggcgcgt tctgggtcgg tgaactatct tctgggcacg cgcttttaca aaatggcctt
     4381 cgtcgaattc ggcaacccgg ccgcgccggc actggtgtgc gtgcatgggc tgacccgcaa
     4441 cgggcgggat ttcgatgcgc tggccgaggc gctggaggac aggtttcatg tcatctgccc
     4501 ggatctgccg ggg
//
LOCUS       DASQCV010000712         1987 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_151636, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000712 DASQCV010000000
VERSION     DASQCV010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1987
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151636"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..626)
                     /locus_tag="VEQ16_11165"
     CDS             complement(<1..626)
                     /locus_tag="VEQ16_11165"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP64444.1"
                     /translation="MSRLGYKVAIVTGGAQGLAAAAASALAKDGATLLITGQNDGEGE
                     EEAAALRANGLHAEYHHLVPADPLSWAALVDKVMRTHGHLDVLVNHAGAHISTTIEDA
                     SAAQLREVLDSDLVAPFLGLKAVIPAMRQSGGGSIINIAASPVVTVLPLYALYSAAKA
                     GLVSLTKNTAMHCHQRGYDIRVNAVHPGVHETPTLTANAIRSTRARNL"
     gene            complement(702..1073)
                     /locus_tag="VEQ16_11170"
     CDS             complement(702..1073)
                     /locus_tag="VEQ16_11170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64445.1"
                     /translation="MSAPRSNPLDHPEVRQASAWRYMAGFISTIVLMQAALYVTTHQQ
                     LPFAEYAFTIAWLALAALLSQAALLFGLDISRAQIWKSVSLVLTVPLFILAVGLSVWM
                     FQNLAARTMIMPNMPQPTLLQ"
     gene            complement(1073..1699)
                     /locus_tag="VEQ16_11175"
     CDS             complement(1073..1699)
                     /locus_tag="VEQ16_11175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HYP64446.1"
                     /translation="MAIQAPPGAGTRLFHPHFEGHDQISARTLGFWLYMLSDALIFTG
                     LFVAYAVLNNPMAAAAGPIAPQIVNQVEGLWQTYAVLGSVAAYSLGTVALKSGNKGGV
                     MLGIVLSILLALVFLYFEAHDLLGLLAAGNGPSRSGYLSAFFVLVATHGLHMVFGILW
                     MLVMLVQIPTLGFSANVVARLINLRMFWQFQATIWVLVYVYVYMIGAF"
     gene            complement(1701..>1987)
                     /locus_tag="VEQ16_11180"
     CDS             complement(1701..>1987)
                     /locus_tag="VEQ16_11180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit I"
                     /protein_id="HYP64447.1"
                     /translation="EAFEPIHMPSNTGIPFIIGMLAFTFGFGLIWRIWWLAGFSLLAI
                     ILAVIIRSFDKNLGYELQPEEIADMERNLSLAGIVAEQPARTPLTEAEAH"
BASE COUNT          391 a          554 c          720 g          322 t
ORIGIN      
        1 tgcaggttgc gcgccctggt ggaacggatg gcgttggccg tgagggttgg cgtctcatgc
       61 acgccgggat gcacggcgtt gacgcggata tcgtagccgc gctggtggca atgcatggcg
      121 gtattcttgg tgaggctgac gagcccggcc ttggcggcgc tgtagagcgc gtagagcggc
      181 agcaccgtaa cgacggggct ggcggcgata ttgatgatgg aaccgccgcc gctctgccgc
      241 atggcgggga tgacggcctt tagcccaagg aacggtgcga cgagatcgga gtccaggacc
      301 tcgcgcaatt gcgcggcgct ggcatcctcg atggtggtgg agatatgcgc gccggcgtga
      361 ttcaccagca cgtcgagatg gccatgggtg cgcatgacct tgtccaccaa agcggcccag
      421 ctgagcgggt ccgcggggac gagatggtga tattccgcgt gcagaccatt tgcgcgcagg
      481 gcggcagctt cttcttcgcc ttcgccgtca ttctggccgg tgatgagaag cgtggcgcca
      541 tctttggcga gcgcgctggc ggccgccgcg gccaggccct gcgcgccgcc tgttacgatt
      601 gccaccttat agccgagacg gctcattctg cctcctgtgc ttgcgcgggt tttgcctcat
      661 ggtcctatcc ggcagaggcg cgcccgcgca agcgggcaga atcactgcag cagggtcggc
      721 tgcggcatgt tgggcatgat catcgtgcgc gccgccaggt tctggaacat ccagacggag
      781 agcccgacag cgaggatgaa gagcggcaca gtgaggacca gggacacgct cttccagatt
      841 tgcgcgcggg aaatgtcgag cccgaagagc aaggccgcct gcgagagcag ggcggccaga
      901 gcgagccagg cgatggtgaa ggcatattcc gcgaagggca gttgctggtg cgtggtgacg
      961 tagagcgccg cctgcatcag cacgatcgtg gagatgaagc cggccatata gcgccaggcg
     1021 ctggcctggc gcacttccgg atggtcgagc gggttggaac ggggagcgga catcagaagg
     1081 ctccaatcat gtaaacatag acgtaaacga gaacccagat cgtggcctgg aactgccaga
     1141 acatgcgcag attgatcagg cgcgccacga cattggcgga gaagccgagc gtggggattt
     1201 gcaccagcat caccagcatc cagagaatgc cgaagaccat gtgcagcccg tgcgtggcga
     1261 caagcacgaa gaaggcggag agatagcccg agcgcgaggg gccgttgcct gccgcgagca
     1321 ggccgagcaa atcatgcgcc tcgaaataga ggaagacgag cgcgagcagg atggacagga
     1381 cgatgccgag catcaccccg cccttgttgc ccgatttcag ggccaccgtg ccaaggctgt
     1441 aggcggcgac ggagccgagc acggcatagg tctgccacag accttccact tggttgacga
     1501 tctgcggggc gatggggccg gcggcggccg ccatcgggtt gttgagcacc gcataggcga
     1561 cgaacaggcc ggtgaagatc agcgcgtccg agagcatata gagccagaag ccgagcgtgc
     1621 gcgcggagat ctggtcatgc ccttcgaaat gcgggtggaa caggcgcgtg ccggcgccgg
     1681 ggggggcttg gatggccatg ttaatgcgcc tccgcttcgg tgagaggggt ccgggctggc
     1741 tgctcggcga cgatgccggc caggctgaga ttgcgctcca tgtccgcgat ttcctccggc
     1801 tgcagctcat agccaagatt cttgtcgaac gagcggatga tgacggcgag aatgatggcg
     1861 aggagcgaga agcccgcgag ccaccagatg cgccagatga ggccgaaacc gaaggtgaag
     1921 gcgagcatgc cgatgatgaa gggaataccg gtattgctcg gcatatggat gggctcgaac
     1981 gcctcgg
//
LOCUS       DASQCV010000713         1615 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1973415, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000713 DASQCV010000000
VERSION     DASQCV010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1973415"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..410)
                     /locus_tag="VEQ16_11185"
     CDS             complement(<1..410)
                     /locus_tag="VEQ16_11185"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HYP64448.1"
                     /translation="MIKVMQGVRVLEVAQHTFVPAAGAILADWGADVIKIEHPVRGDT
                     MRGFVQIGGVKVDPKRNTLMEHPNRGKRSVGVDVSKQEGQQVIYELAKTADVFLTNYL
                     PAQRQKLKLDIEHIRAVNPRIIYARGSAYGDKGP"
     gene            572..1546
                     /locus_tag="VEQ16_11190"
     CDS             572..1546
                     /locus_tag="VEQ16_11190"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HYP64449.1"
                     /translation="MPDQAHPEYSLTRPHELTAEDFLRAATERFPVGRVIEARNLQAA
                     NATAMILDYERDFPVTGNWFSKNIHFFDMSLSRRPPGARGYFEEAFSDHRKLGKIFFL
                     PAGHRYRGEGGQGRQQSLSLFLRTHPGDEEEQMFGAAIVPVLPHCLNLESNVLHTLLG
                     CIAQEVTQPGFAASLQLEGLSITLLAETARFLHGLRQRNVRKGGLSPQRLRMIEERIR
                     DGDRSTSIAELAALCHLSPRQLVRAFRAETGETIGAFVQRMTMERAKTLLGSSDKPIG
                     EIAAELGFTSSAAFSTAFRRASGQYPRDYRTTRRIDEEARDVQSGIVA"
BASE COUNT          287 a          501 c          510 g          317 t
ORIGIN      
        1 tcgggcccct tgtcgccata ggcgctgcca cgggcataga tgatgcgcgg attgacggcg
       61 cggatatgct cgatgtccag cttcaacttc tggcgctggg cggggaggta gttggtgagg
      121 aatacgtcgg ccgtcttcgc cagctcatag ataacctgct ggccctcttg cttggacaca
      181 tccaccccga cgctgcgctt gccgcggttg gggtgctcca tcagcgtgtt gcgcttcggg
      241 tccactttga cgccgccgat ttgcacgaag ccgcgcatcg tatcgccgcg caccgggtgc
      301 tcgatcttga tcacgtccgc gccccaatcg gcgagaatgg cgccggcggc cggcacgaat
      361 gtgtgctgcg ccacttcaag aacgcgcacg ccctgcatca ccttgatcat ttcttgctcc
      421 ttcctccacc cgcaacttta gaagtccagc gggccggcgc aattatgccg ccgcgccata
      481 tttgcgcgtt tgcgccaatt tggcttgctt gacactgtct ctgcgcgcgc cccagaatgt
      541 caggcccgcg cggcgagaca aagataagac catgcccgac caagcccacc cggaatattc
      601 cctcaccagg ccgcatgagt tgacggcgga ggatttcttg cgcgccgcga cagagcggtt
      661 tccggtgggg cgcgtgatcg aagcgcgcaa tttgcaggcg gccaacgcca cggcgatgat
      721 cctggattat gagagggatt ttcccgtcac cggcaactgg ttctcgaaga atatccattt
      781 cttcgacatg agcctgtcgc gccggccgcc aggggcgcgc ggctatttcg aggaggcatt
      841 cagcgaccat cgcaagcttg gcaaaatctt cttcctgccc gccgggcacc gctatcgcgg
      901 cgagggcgga caagggcggc agcagagcct gtcgctgttt ctacgcaccc atcccggcga
      961 tgaggaggag cagatgttcg gcgccgcgat tgtgccggta ctgccgcatt gcctgaatct
     1021 cgaaagcaat gttttgcaca cgctgcttgg gtgtatcgcc caggaggtaa cgcagcccgg
     1081 ctttgcggct tcgttgcagc tggagggatt gagtatcacg ctgctggcgg aaaccgcgcg
     1141 gtttctgcac gggctgcggc agcggaatgt gcgcaagggc gggctgtcgc cgcagcggct
     1201 gcggatgatc gaggagcgca tacgcgatgg cgaccgctcc acctccatcg ccgagctggc
     1261 ggctttgtgc catttgagtc cgcgccagct ggtgcgcgcc ttccgtgctg aaaccggcga
     1321 gacgattggc gccttcgtgc aacgcatgac gatggagcgg gctaaaaccc tgctggggag
     1381 cagcgacaaa cccatcggcg agatcgcggc ggagctgggc tttaccagca gcgcggcgtt
     1441 ttccaccgcc ttccgccgcg cgagcgggca atatccacgt gattaccgga caacgcggcg
     1501 gattgatgag gaggcgcggg acgtgcagag cgggattgtg gcttagagtc ccttgcggca
     1561 accagcctca aagcgatttc gtttcaaaat caccatcgac aatcacctgc accgt
//
LOCUS       DASQCV010000714         1597 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2473458, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000714 DASQCV010000000
VERSION     DASQCV010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2473458"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1021)
                     /gene="dxr"
                     /locus_tag="VEQ16_11195"
     CDS             complement(<1..1021)
                     /gene="dxr"
                     /locus_tag="VEQ16_11195"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: protein motif:HMM:TIGR00243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HYP64450.1"
                     /translation="MKQLAILGSTGSIGRQCLSVVDQLEGQFGVVALAAGSNLDELTG
                     QIGRYRPELVSVGDSDRADQLANRLRERGIAPLPSIHHGGEGMLAVGTHRAAEIVVSA
                     AVGVVGLEATYEAVKLGKTIALSNKEVLVAAGELVMAAARRAGKELLPVDSEHNAVHQ
                     CLRGGKHAEVRRLVLTASGGPFRDTPINRLGNVTVEQALDHPNWRMGNRITVDSATMM
                     NKGFEVIEARWLFDMQPGQVDVVIHPQSTIHSMVEFVDGSVLAQLGATDMRMPIQYAL
                     TFPDRVASNGLALDWAKLKRLDFKKVSTRRYPCLRLAREALKKGGAWPCALNAADEVA
                     VGAFLQ"
     gene            complement(1068..>1597)
                     /locus_tag="VEQ16_11200"
     CDS             complement(1068..>1597)
                     /locus_tag="VEQ16_11200"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: protein motif:HMM:NF013327.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HYP64451.1"
                     /translation="TRRPMVEALPAAGISSSALLLVALPLTFAIRLHGVSETGPFLLL
                     FALVITWVGDSAAYFVGRTLGRHPFAPHLSPKKTWEGSAASFVGSLLAGLAMARWGAS
                     QIHPAQVLGMAAAGNVAGQMGDLLESAYKRSAGVKDSGALLPGHGGILDRIDALVLTF
                     PVVWYYWLWIYSPRA"
BASE COUNT          332 a          552 c          446 g          267 t
ORIGIN      
        1 gctgcaaaaa cgccccgacc gctacttcgt cggctgcgtt cagggcgcag ggccaagctc
       61 ctcccttttt caaggcttct cgggccaagc gcaggcaggg atatcggcgc gtggaaacct
      121 tcttaaagtc caggcgcttc agtttggccc aatccaaggc tagcccgtta gatgccaccc
      181 tatctggaaa ggttaacgca tattggatgg gcatgcgcat atcagttgcg ccgagctgcg
      241 ccagaaccga accgtccaca aactcaacca tggaatggat cgtagactgc ggatgaatca
      301 ccacgtccac ctggccgggc tgcatgtcga acagccaccg cgcctcaatc acctcgaaac
      361 ccttgttcat catggtggcg gagtccacgg taatgcgatt gcccattctc caattgggat
      421 gatcgagcgc ctgctccaca gtaacgttcc ctagccggtt gatcggcgta tcgcgaaaag
      481 gtccgcccga agccgtcagc accagccggc gcacctcggc atgcttcccg ccacgcaaac
      541 actgatgcac cgcgttgtgc tcgctgtcca cgggcaaaag ctctttgccc gcccgccgcg
      601 ccgcggccat caccagctcg ccggcggcca ccaaaacctc cttattggaa agcgcgatgg
      661 tctttccgag cttcaccgct tcgtaggtcg cttcgagccc caccaccccg accgccgcag
      721 aaaccacaat ctccgccgcc cggtgcgtgc cgacggccag catcccttca ccaccgtgat
      781 gaatcgaggg aagcggagca attcccctct cgcgcaagcg gttcgccagc tgatctgccc
      841 ggtccgagtc gccgaccgaa accagctccg ggcggtagcg cccgatctgc cccgtcagct
      901 cgtcgagatt gcttccggcc gccaaagcga ccacgccaaa ctgtccctcc agctggtcca
      961 ccacagagag acactggcgg ccaatcgaac ctgtcgaacc cagtatggcc agctgcttca
     1021 cggagcgtta aaccttattt taagactggt tgcgaaggcc caagtggcta ggcgcgcggc
     1081 gaatagatcc acagccaata ataccagaca accggaaagg tgaggaccag tgcgtcgatg
     1141 cgatcgagaa tcccgccatg gccgggcagc agcgccccgg agtccttcac tccggcgctg
     1201 cgtttgtagg cggactccag caggtcaccc atttgacccg caacattacc cgccgccgcc
     1261 atgcccagca cctgggccgg atggatttgg ctggcgcccc agcgcgccat ggccagtccg
     1321 gccagcagcg atccgacaaa gctcgccgcc gagccttccc acgttttttt cgggctgagg
     1381 tgtggcgcga agggatgccg tccgagtgtc cttccgacaa aataggcagc cgaatcgccc
     1441 acccaagtga tcaccagcgc aaaaagcagc aggaaggggc cggtctcgga aacaccgtgc
     1501 agccggatgg caaaggtgag cggcaaggca accagcagca gggcgctcga actgatgccc
     1561 gcggccggca gcgcctccac catcggccgc cgcgttg
//
LOCUS       DASQCV010000715         1793 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_152190, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000715 DASQCV010000000
VERSION     DASQCV010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1793)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1793)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1793
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_152190"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="VEQ16_11205"
     CDS             <1..254
                     /locus_tag="VEQ16_11205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008620224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c oxidase subunit II"
                     /protein_id="HYP64452.1"
                     /translation="EAWFKIDKDKPGLYRGQCAELCGRDHGFMPIVVDARSKEDFAAW
                     LKQKAAEQKEAAAATAPAGNPPAAAPTTVAAAASGAGSS"
     gene            312..>1793
                     /locus_tag="VEQ16_11210"
     CDS             312..>1793
                     /locus_tag="VEQ16_11210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012566003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 1"
                     /protein_id="HYP64453.1"
                     /translation="MAEVQTTASPHDEHDHKPHGWRRWVYATNHKDIGTMYLVFACIM
                     FFIGGGAAMLIRLELFSPGLQFFDPQFFNSLTTMHALIMIFGAIMPAWTGLANWMIPM
                     QVGAPDMALPRLNNLSFWILPFAFTLLLATFFVPGGAPAGGWTMYPPLILQTGAAFPM
                     LIFAVHLMGASSILGAINVIVTIINMRAPGITLLRMPLFVWTWLITAYLLIAVMPVLA
                     GAVTMLLTDHFFGTTFFTAAGGGDPVMFQHIFWFFGHPEVYILILPAFGIVSEVIPTF
                     SRKPLFGYEAMVYATASIAFLSFIVWAHHMFTVGMPLAAQLFFMLSTMLIAVPTGVKV
                     FNWTATMWKGSLSFEPPMLFALAFLFLFTIGGFSGLMLAIVPADYQYQDTYFVVAHFH
                     YVLVPGTIFGIMAGVYYWLPKWTGKMYDMTLAKWHFWLSAIFVNVLFFPQHFLGLAGM
                     PRRVPDYATQFADWNMVSSIGGFGFGLSQLLFPIIIIMCVRGGP"
BASE COUNT          273 a          611 c          532 g          377 t
ORIGIN      
        1 acgaggcgtg gttcaagatc gacaaggaca agccggggtt gtaccgcggg cagtgcgccg
       61 agctctgcgg gcgcgaccac ggcttcatgc cgatcgtcgt cgatgcccgc tccaaggagg
      121 acttcgccgc gtggctgaag cagaaggccg cggaacagaa ggaggcggct gccgcgaccg
      181 cgcccgccgg caacccacct gccgccgccc cgaccacagt cgccgcagcc gccagcggcg
      241 ctggctcatc gtgagcccgc agcgagcccc ccgccccgga aaccgaacgc cgcattcata
      301 gagagagcgt catggccgaa gtccagacca ctgcctcccc gcacgacgag cacgatcaca
      361 agccgcacgg ctggcggcgc tgggtatacg cgaccaacca caaggacatc ggcacgatgt
      421 acctggtgtt cgcctgcatc atgttcttca tcggcggtgg cgctgcgatg ctgatccgcc
      481 tcgagctctt cagcccgggg ctgcagttct tcgatccgca gttcttcaac tccctcacca
      541 cgatgcacgc actcatcatg atcttcggcg cgatcatgcc ggcgtggacc gggctcgcga
      601 actggatgat cccgatgcag gtgggcgcgc ccgacatggc cctgccgcgg ctcaacaatc
      661 tcagcttctg gatcctgccc tttgcgttca cgctgctgct cgccacgttc ttcgtgccgg
      721 gcggggcgcc ggcaggcggc tggaccatgt acccgccgct catcctgcag accggcgccg
      781 cgttcccgat gctgatcttc gccgtgcacc tgatgggcgc ctcctcgatc ctcggtgcca
      841 tcaacgtcat cgtcaccatc atcaacatgc gggcgccggg catcacgctg ctgcgcatgc
      901 cgctgttcgt gtggacctgg ctgatcaccg cctacctcct gatcgcggtg atgccggtgc
      961 ttgcgggcgc tgtgaccatg ctgctcaccg atcacttctt cggcaccacc ttcttcaccg
     1021 ccgccggcgg tggcgatccg gtgatgttcc agcatatctt ctggttcttc ggccatcccg
     1081 aggtgtacat cctcatcctg ccggccttcg gcatcgtctc ggaagtgatc ccgaccttct
     1141 cgcgcaagcc gttgtttggc tacgaagcca tggtgtacgc gaccgcctcg atcgccttct
     1201 tgtcgttcat cgtctgggcg catcacatgt tcacggtcgg catgccgtta gccgcgcagc
     1261 tgttcttcat gctctcgacc atgctgattg cggtgccgac cggcgtgaag gtgttcaact
     1321 ggacggccac catgtggaag gggtcgctgt cgttcgagcc cccgatgctg tttgcgctcg
     1381 cgttcctgtt tctgttcacc atcggcggct tctcgggact gatgctcgcc atcgtgccgg
     1441 cggattatca gtatcaggac acctatttcg tggtggcgca cttccactac gtgctggtgc
     1501 cggggaccat cttcggcatc atggccgggg tgtactactg gctgccgaaa tggaccggca
     1561 agatgtatga catgacactc gccaagtggc acttctggct gtcggcgatt ttcgtcaatg
     1621 tgctgttctt cccgcagcac ttcctcgggc tggccggcat gccgcggcgc gtccccgact
     1681 atgccacgca gtttgcggac tggaacatgg tctcctcgat cggaggcttt ggctttggcc
     1741 tctcgcagct gctgttcccg atcatcatca tcatgtgcgt gcgcggcgga cca
//
LOCUS       DASQCV010000716         2507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2638978, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000716 DASQCV010000000
VERSION     DASQCV010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2638978"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            164..1951
                     /gene="htpG"
                     /locus_tag="VEQ16_11215"
     CDS             164..1951
                     /gene="htpG"
                     /locus_tag="VEQ16_11215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HYP64454.1"
                     /translation="MTEETRNFGTEVGRLLDLVVHSLYSDREIFLRELVANAADATDK
                     RRFLSLSDEALALPENPAVKIAVDKTARSITIADCGIGMEKEELAENLGTIARSGTAA
                     FAARQLAEKKPEDKPSLIGQFGVGFYSAFMVADKVEVISRKAGHDEAWEWVSDGKGTY
                     TLKSAAREAAGTTVVLHVKQDAEEFLDAFRIKNIIRKWADHVALPIELQEEGKYEPVT
                     EGRALWRKPKSEVTAEEYTDFYRHTGHHFDEPWATIHWRAEGTLEFSALLFIPASKPF
                     FPVEERRESKVRLHVKRMFITDEAKLLPDWLSFVTGVVDTEDLPLNVSRELLQATPVL
                     DKIRKALLNRVLSELKSKAKEPENFKTFLENFGSVLKEGVYEDTGHAAEIAALLRFAS
                     TKEESTTLDEYVARMPEGQDEIYYLAGDAAHLKKSPQLEGFAEKGYEVLLLGDPIDAF
                     WPERLARYKEKKLTSVSQAGKLFEAGEVPAEMSALCEKLAASLGSKVSGVGVSARLKD
                     SPAMLAAAEGGPDLAMQRLLRRAGRPIFGPAPKLEINPGHRLVQALAGREDVTEAASL
                     LLDLARLQEGDLPEDPAAFVRHVAGAIAG"
     gene            2099..>2507
                     /locus_tag="VEQ16_11220"
     CDS             2099..>2507
                     /locus_tag="VEQ16_11220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64455.1"
                     /translation="MADNNTVKTADDAPKYWSEQGWMPGGVLREVDYASQSRGLDPSL
                     AGIKIVDCDTHVTEAPDLFTSRAPAKFKDRVPVVKRVDGVDRWFIGDRNFGSLGGNVI
                     RADNNKLLGRLAFPTIDEGHTGAYITKTRLQAMD"
BASE COUNT          489 a          767 c          829 g          422 t
ORIGIN      
        1 gtgagcactg ttgcttcgcg cactcgaacc ggtggcgtgc gctcgcaacc gcagaaaatc
       61 gccgccaggc ggccgccaga ggagagtttg cgaacagtct cttagccccc ttggagcggc
      121 ggtgcggctt gtttaaatac cggttgcaaa aagtgaggat ggcatgaccg aagaaacacg
      181 gaattttggc acggaagtgg ggcggctgct cgatctggtg gtgcattcgc tttattcgga
      241 ccgggagatt ttcctgcgcg agctggtggc caatgcggcc gatgccacgg ataagcgccg
      301 ttttctctcc ctttccgacg aggcgctggc tctgcccgag aacccggcgg tgaaaatcgc
      361 tgtggacaaa acggcgcgca gcatcaccat cgccgattgc ggcatcggca tggaaaagga
      421 ggagctggcg gagaatctgg gcaccatcgc ccgctccggc accgccgcct tcgccgcccg
      481 gcagctcgcc gagaaaaagc ccgaggacaa acccagcctg atcggccagt ttggcgtggg
      541 gttctattcc gccttcatgg tggcggataa ggtcgaggtc atctcccgca aggccgggca
      601 tgacgaggcg tgggaatggg tctccgacgg caagggcacc tacacgctca agagcgcggc
      661 gcgcgaggcc gccggcacca cggtggtgct gcatgtgaaa caggatgcgg aagagttcct
      721 ggatgcgttc cggatcaaga acatcatccg caaatgggcg gaccatgtgg cgttgccgat
      781 cgagcttcag gaagagggca aatatgagcc tgtcaccgag ggcagggcgc tctggcgcaa
      841 gccgaaatcc gaagtgacgg cggaggaata tacggatttc taccgccata ccgggcatca
      901 tttcgacgag ccctgggcga ccatccattg gcgcgccgag ggcacgctgg aattctccgc
      961 gctgctcttc atccccgctt cgaaaccgtt tttccccgtg gaggagaggc gggaatcgaa
     1021 agtgcggctg catgtgaagc gcatgttcat taccgacgag gcgaaattgc tgccggactg
     1081 gctctccttc gttacgggcg tggtggatac ggaagatctg cccctgaatg tgagccgcga
     1141 gctgctacag gcgacgccgg tgctggacaa gatccgcaag gcgctgctca accgtgtgct
     1201 gtccgagctg aaatccaagg ccaaggaacc ggaaaatttc aagacattcc ttgagaattt
     1261 cgggtcggtg ctgaaggaag gcgtgtatga ggataccggc catgccgccg agatcgccgc
     1321 cctgctgcgc tttgcctcca ccaaggagga gagcaccacg ctggatgagt atgtcgcccg
     1381 catgccggaa gggcaggacg agatttacta cctcgccggc gatgccgcgc atctgaaaaa
     1441 atcaccgcag ctcgaaggct tcgcggagaa gggctatgag gtgctgctgc tgggcgaccc
     1501 catcgacgcc ttctggccgg agcggctggc gcgctacaag gagaagaaac tcaccagcgt
     1561 gagccaggcc ggcaagctct tcgaggccgg cgaggtaccg gccgagatgt cggcgctgtg
     1621 cgagaagctc gccgcgtccc ttggcagcaa agtctccggt gtgggcgtgt ccgcgcggct
     1681 gaaggatagc cccgccatgc tggccgcggc cgaaggcggg ccggacctcg ccatgcagcg
     1741 cctgctgcgc cgcgccggcc gccccatttt cggcccggcg ccgaaactgg agatcaaccc
     1801 tggccacaga ctggtgcagg ccctggccgg acgcgaggac gtgaccgagg ctgcctcgct
     1861 gctgctcgat ctggcccggc tgcaggaagg cgacctgccc gaggacccgg ccgccttcgt
     1921 gcggcatgtg gcgggcgcca tcgcgggcta aaaatgacgg gcgccgggcc agcccggcgc
     1981 ccgttgtcag gcggatttga ttatcgcgta aaaaactggt aagttgtctg ttattaaacc
     2041 atgcgcgatt ggccagccct ttccgggcgg gaacaaccgg cagccggagg agtgtgatat
     2101 ggcagacaac aacaccgtca agacggcgga cgacgccccg aaatattggt ctgagcaggg
     2161 ctggatgccc ggcggcgtgc tgcgcgaggt ggactacgcc tcgcagtcgc gcgggctgga
     2221 cccctcgctc gccggcatca agatcgtcga ttgcgacacc cacgtcaccg aggccccgga
     2281 cctattcacc tcgcgcgccc cggccaagtt caaggaccgc gtgccggtgg tgaagcgcgt
     2341 cgacggcgtc gaccgctggt tcatcggcga ccgcaatttc ggctcgctcg gcggcaacgt
     2401 catccgcgcc gacaataaca agctgctcgg ccgccttgcc ttcccgacta tcgatgaggg
     2461 ccataccggc gcctacatca ccaagacccg cctgcaggcg atggacg
//
LOCUS       DASQCV010000717         2076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2307161, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000717 DASQCV010000000
VERSION     DASQCV010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2307161"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..137)
                     /locus_tag="VEQ16_11225"
     CDS             complement(<1..137)
                     /locus_tag="VEQ16_11225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis protein C"
                     /protein_id="HYP64456.1"
                     /translation="MISLLSNAELEAALREVGARHYHHLHPFHKLLHSGGLSQTQVQA
                     WA"
     gene            complement(134..1063)
                     /gene="pqqB"
                     /locus_tag="VEQ16_11230"
     CDS             complement(134..1063)
                     /gene="pqqB"
                     /locus_tag="VEQ16_11230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014249838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018189 - pyrroloquinoline quinone
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis protein
                     PqqB"
                     /protein_id="HYP64457.1"
                     /translation="MQVLVLGAAAGGGFPQWNCNCPGCRRGRGNDAAVRPRTQASLAI
                     SADGRRWALLNASPDLPHQLRVHAMLHPADDGSARHSPVSAVVLSGGDVDCIAGLLSL
                     RESQPLSIYAGDHVRAILGGNQIFRVLDHKIVNFWSLPMTQETKLRDAEGTELGLSVQ
                     AFAVPGKIPLYQETSDDLRDLASTSAVIGLSITGPQSKRLVYIPGCAEVTDAVLRQID
                     RADLLFFDGTLWQDDEMIRAGTGRKTGRRMGHMSISGEDGSMAALAGATVGKKIFIHI
                     NNTNPILCEDSPQAAAVRAAGWDIAFDGMEFRL"
     gene            complement(1457..>2076)
                     /locus_tag="VEQ16_11235"
     CDS             complement(1457..>2076)
                     /locus_tag="VEQ16_11235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64458.1"
                     /translation="AVKYPKKLQQLKDLWWSEAGRYNVLPLGATGSLFVEMLAERAKP
                     RQEVFHGPVQRIPESIAPDIKTRSHRATVSVEIPETGAEGVFYAMGGLSLYLKDGYVT
                     YHYNFAGIKHTVIRSSRKLPAGRTDIKLDVTPVGLGPGVPANVKLLFGEEEVGSGQVP
                     NTASFRFSIHETFNIGADLLTPVTSDYAVPFAFTGKIHRTIFDLR"
BASE COUNT          413 a          605 c          660 g          398 t
ORIGIN      
        1 gcccaggcct gcacctgcgt ttgcgacagc ccgccggaat gcagcaattt atggaacggg
       61 tgcagatgat ggtaatggcg cgctccaacc tcgcgcagcg cggcttccaa ttcggcgtta
      121 ctcagcaggc tgatcacagg cgaaactcca tgccgtcaaa ggcgatgtcc caacccgccg
      181 cgcgcacggc ggcggcctgc ggcgagtctt cacataaaat cgggttggtg ttgttgatat
      241 ggataaatat ctttttccca accgtcgcac cggcaagtgc tgccatgctg ccgtcttcgc
      301 cggagatgct catatgcccc atccgtctgc ccgtcttgcg gcctgtgccg gcgcggatca
      361 tctcgtcatc ctgccacaag gtgccgtcga aaaacagcag gtcggcacgg tcgatctgac
      421 gcaggaccgc gtccgttacc tcggcgcagc cgggaatata gacgagccgc ttgctttgcg
      481 ggccggtgat ggagaggccg atgactgcgc tcgtggaggc gaggtcgcgc agatcgtccg
      541 atgtttcctg ataaagcggg attttgccgg gcacggcaaa ggcctgcacg gagaggccca
      601 gctccgtgcc ctcagcgtcg cgcagcttcg tctcctgcgt catcggcaag gaccaaaaat
      661 tcacgatctt gtggtccagc acgcggaaaa tctggttgcc gccgagaatg gcgcggacat
      721 ggtcgccggc atagatggac aaaggttgcg actcacgcag agagagcagg ccggcgatgc
      781 aatccacatc gccgcccgaa aggacaaccg cgcttacggg cgaatggcgg gcggagccat
      841 catcggccgg gtgcaacatt gcatgcacac gcaattgatg tggcagatct ggactggcat
      901 tcagcagggc ccagcgcctg ccatcggcgc tgatagcgag cgaggcctgg gtacgcgggc
      961 gcacggctgc gtcattgcca cggccgcggc ggcatcccgg gcaattgcaa ttccattgcg
     1021 gaaagccacc accggctgcc gcgcctagca ccaaaacttg cattttataa cggaatcatc
     1081 ttgaaaatgg caccgtcgtg gtgatgacac gccttgcgat catgccgcag catatcgcgg
     1141 tgattgataa ccaatcaccg cgctgaacac aaaaatgcgc cgggaattaa cccgctggac
     1201 tgcctatttc cgggccgcgg aaatatagga gttgatttcg gcaccgatgc aaatttcggt
     1261 catcttgggt ttacgccaca taataccctt ctccggggtt tgagttcagc cattgccccc
     1321 gttgcaaccg gaggggcagt gtatagtggg ggatatgccc atgtcctgtc aaatgaaacg
     1381 gcgccgcctg atgagggcgg cgcctggcgc tcagccgagg tccggctggc acgggggacg
     1441 cgccatggcc tggtcctcag cgcaggtcga aaatggtgcg gtggatcttg ccggtgaaag
     1501 caaaaggcac agcgtagtct gaagtgaccg gggtgagcag gtcggcgccg atattgaagg
     1561 tctcgtggat ggagaagcgg aaggatgcgg tgttgggcac ctggccgctg ccgacctcct
     1621 cttcgccgaa cagcaatttg acgttggcgg gcacgcccgg tcctaagccc accggcgtga
     1681 catcgagctt gatgtccgtg cggccggcgg ggagcttgcg gctggaacgg atcaccgtgt
     1741 gttttatccc ggcaaaatta taatggtagg tgacatagcc atccttgaga tagaggctga
     1801 gcccgcccat ggcgtagaac acgccttccg cgcccgtttc gggaatctcc acactcaccg
     1861 tggcgcggtg cgagcgcgtt ttgatgtcgg gcgcaataga ttcggggatg cgctgcacgg
     1921 gcccgtggaa aacctcctgg cgtggcttgg cgcgttcggc cagcatttcg acgaagagcg
     1981 agccggtggc gccgagcggc aggacattgt agcgcccggc ctcggaccac cagagatcct
     2041 tcagctgctg caatttcttc gggtatttaa cggcga
//
LOCUS       DASQCV010000718         4242 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_648759, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000718 DASQCV010000000
VERSION     DASQCV010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4242
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_648759"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..492
                     /locus_tag="VEQ16_11240"
     CDS             <1..492
                     /locus_tag="VEQ16_11240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B C(17)-methyltransferase"
                     /protein_id="HYP64459.1"
                     /translation="DPGVFAMAASVFEVLEEAPEWQFLDVRVLPGITAMLAAAAKAGA
                     PLGHDFCAINLSDNLKPWALIEKRLRLAAQADFVMALYNPRSAARPDGFGRALAILRE
                     ECEPERLLIFARAVTTPQEQIQTVTLAAAEAEMADMRTIVLIGSRSTREVGRFVYTPR
                     GAS"
     gene            complement(468..1283)
                     /locus_tag="VEQ16_11245"
     CDS             complement(468..1283)
                     /locus_tag="VEQ16_11245"
                     /EC_number="1.3.1.106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008495612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016994 - precorrin-6A reductase activity
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-6A reductase"
                     /protein_id="HYP64460.1"
                     /translation="MRSWRVSPGHGKMPSMSAPQPKPVRVLLLGGTTEASRMARALAQ
                     AGINAVFSYAGRTDTPIPQPLPLRIGGFGGADGLAEYLRAEAITHVIDATHAFAVQMS
                     RNAVSACAQAGVKLLALERPAWVAGPEDEWRAVPDLAAAAAALPTAPARVFLAIGRQG
                     LNLFATRPEHFYLLRLVDPPAAPIPLPHKEILLQRGPFKLENDLALLRQHRIALVVTK
                     NAGGEGAWAKLEAARQLNLPVLMVERPVPPARKVVATPEEALRWLGHDAPLGV"
     gene            1274..2464
                     /gene="cbiE"
                     /locus_tag="VEQ16_11250"
     CDS             1274..2464
                     /gene="cbiE"
                     /locus_tag="VEQ16_11250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010668373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6y C5,15-methyltransferase
                     (decarboxylating) subunit CbiE"
                     /protein_id="HYP64461.1"
                     /translation="MSAPWLSIIGIGEDGLAGLSEEARMRLDGAEIIFGGPRHLALAG
                     AEERGQPWPVPFSIAPLLACHSRPVVALCSGDPFWHGAGSLLAEALGQGEWTAFPASS
                     SFSLAVARLGWRLEQVTCLGLHAAPFTRLRPHLTRGVRLICLLRGPDAAPAFAAYLCA
                     QGFGASRLWRLEALGGPHERIIQGTAEELAALPPGAWPVAMAVEAAGPLGLPRTPGLP
                     DEWFEHDGQITKRAIRALTLSVLAPRAGEHLWDVGTGSGSIAIEWLLAAPFSRASALE
                     ADPARAARARRNAENFGVEDRFTLHEQRAPDGLEKLPRPDAIFLGGGASEALLERLWA
                     LAPTGTRLVANAVTLESEALFTAWAAMKGGNLLRLELAEAAPLGRLRGWVPARPIMQW
                     SVTL"
     gene            2461..3243
                     /gene="cobM"
                     /locus_tag="VEQ16_11255"
     CDS             2461..3243
                     /gene="cobM"
                     /locus_tag="VEQ16_11255"
                     /EC_number="2.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006557187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0046026 - precorrin-4
                     C11-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-4 C(11)-methyltransferase"
                     /protein_id="HYP64462.1"
                     /translation="MTVHFIGAGPGAPDLLTLRGRDLIAASPVCLYAGSLIPEGVLAH
                     CPPGAKIINTAPLSLDDIIAEIQTADAQGLDVARLHSGDLSIWSAMGEQLQRLRALGI
                     AYDITPGVPSFAAAAASLGAELTLPGIAQSIVLTRTPGRASPMPSGESLAAFAATGAT
                     LALHLSIHKLPELVAALTPHYGADCPVAVAWRASWPDERILSGTLGNIEALMDEKIDR
                     TALILVGRVLGAEDFARSRLYAPDYDRRYRPTGATPRFPDPS"
     gene            3240..>4242
                     /locus_tag="VEQ16_11260"
     CDS             3240..>4242
                     /locus_tag="VEQ16_11260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006557188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042242 - cobyrinic acid a,c-diamide
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobyrinate a,c-diamide synthase"
                     /protein_id="HYP64463.1"
                     /translation="MSPPGLIIAAPASGAGKTLLTLGLARAWRQRGVHVQPFKCGPDY
                     IDPAFLAAAAGRPCFNLDSWAMAPGEISTLAQNATGADLALAEGSMGLFDGVARAGAS
                     GSGASADMASLLGWPVVLVLDTRGQAQSAAAVAAGFARFRENVKIAGVVLNRVASPRH
                     EKLLRAGMAQVDLPVFGALPRQDSVKVPERHLGLVQAAELPALEALLDNAAEIVSTHC
                     DMDALRAAANAAPSEASATSIRPPGQRIALAQDEAFSFIYPHLLAAWHAAGSEILPFS
                     PLGNEPPPDDADICWLPGGYPELHAGKIAAASHFRAGLRRFAETRPVHGECGGYMVLG
                     "
BASE COUNT          641 a         1512 c         1372 g          717 t
ORIGIN      
        1 gatcccggcg tgttcgccat ggcggcttcg gtgttcgagg tgctggagga agcgccggaa
       61 tggcagttcc tggacgtacg cgtgctgcct ggcatcaccg ccatgctggc ggcagcggcc
      121 aaagccggcg cgccgctcgg gcatgatttt tgcgccatca atctgtccga caatctcaag
      181 ccatgggcgc tcatcgaaaa acgtctgcgc ctggccgcgc aggccgattt cgtcatggca
      241 ctttacaacc cgcgctccgc cgcgcggccc gacgggtttg gccgcgcgct cgccatcttg
      301 cgcgaggaat gcgagccgga acggctgctg atttttgccc gcgccgtgac gacgccacag
      361 gagcaaatcc aaaccgtaac gttggcggct gcagaagcgg agatggcgga catgcgcacc
      421 atcgtgctga taggtagccg cagcacacgc gaggttgggc gcttcgtcta cacgccgaga
      481 ggcgcgtcat gaccgagcca gcgcaaagcc tcttccggtg tggcaacaac tttacgcgcc
      541 ggcgggacag ggcgctcaac catcagcacc ggcaaattca gctgccgtgc cgcttccagt
      601 ttggcccatg cgccctcgcc accggcattc ttggtgacga ccagtgcgat gcggtgctgg
      661 cgcaggagcg cgagatcgtt ctccagcttg aaaggaccgc gctggagcag aatctctttg
      721 tgcggcagtg gaatgggcgc ggcgggcgga tcgaccagcc ggagcagata aaaatgttcc
      781 ggccttgtgg cgaacaaatt caacccctgc cggccgatgg cgagaaacac cctggccggc
      841 gcagtgggca aggcagcggc cgcagcggcg aggtccggca cggcgcgcca ttcatcctca
      901 ggccccgcta cccaggccgg gcgctccagc gccagcaatt tcacgcccgc ctgggcgcag
      961 gcggaaacgg cgttgcggct catctgcacc gcgaaggcat gggtggcgtc gatgacatgg
     1021 gtgatggctt ctgcccgcaa atattccgcc agcccgtccg cgccgccgaa gccgccgatg
     1081 cgcaaaggca aaggctgcgg aatcggcgtg tccgtgcgcc ccgcatagga gaacacggca
     1141 ttaatccccg cctgcgccaa agcgcgcgcc atgcggctgg cttccgtggt gccgcccagc
     1201 agcaggacgc ggacaggctt gggttggggt gcggacatgg agggcatttt gccatggcca
     1261 ggcgagacac gccatgagcg caccctggct ctccatcatc ggcatcggcg aggacgggct
     1321 ggctggcctg tccgaagaag cacgcatgag gctggatggc gccgaaatca tcttcggcgg
     1381 cccccgccat ctggcgctcg caggcgcgga agagcgcgga cagccttggc cggtgccctt
     1441 ttccatcgcg ccgcttctcg cctgccattc gcgtcctgtt gtggccttat gctcgggcga
     1501 tccgttttgg cacggggcgg gcagcctgct cgcggaagcg ttggggcagg gggaatggac
     1561 ggccttcccc gcgtcttcga gcttctccct ggcggtggca cggctcggct ggcggctgga
     1621 gcaggtcacc tgcctggggc tgcatgcagc gcccttcacc cggctgcgtc ctcatctcac
     1681 gcgcggggtc cggctgattt gcttgctccg cggccctgac gccgcccctg ctttcgctgc
     1741 ttatctctgc gcacaaggtt ttggtgcctc acgcctatgg cgcctggaag cgctgggcgg
     1801 tccccatgag cgcatcatcc agggcacggc ggaagaactg gccgctctgc cgccaggcgc
     1861 ctggccggtg gccatggccg tggaggccgc cgggcctttg ggattgccgc gcacccctgg
     1921 cctgccggac gaatggttcg agcatgacgg gcagatcacc aaacgcgcca tccgtgccct
     1981 cactctgtcc gtcctcgcgc cccgcgccgg tgagcattta tgggatgtcg gcacgggcag
     2041 cggctccatc gccatcgaat ggctgctggc cgcccccttc agccgcgcca gcgcgttgga
     2101 agccgatccc gcccgcgccg cccgcgcccg gcgcaacgcg gaaaatttcg gcgtcgaaga
     2161 ccgtttcact ttgcacgaac agcgcgcccc ggacgggcta gaaaaattgc cgcggccgga
     2221 cgccatcttc ctcggcggcg gcgccagcga ggcgctgctg gaacggctct gggccctggc
     2281 gcctaccggt acccgccttg tggccaatgc tgttacgctg gaaagcgagg ctctgttcac
     2341 cgcctgggcc gccatgaagg gcggaaacct gctgcgcctg gaactcgccg aagccgcgcc
     2401 cctgggccgg ctgcgcggct gggtgccggc cagacccatc atgcaatgga gcgtgacgct
     2461 gtgaccgtgc atttcatcgg cgccggcccc ggcgcgccgg acctcctcac cctgcgcggc
     2521 cgagacctca tcgccgcctc gccggtctgc ctctacgccg gctccctcat ccccgaaggc
     2581 gtgctggcgc attgcccgcc gggcgccaaa atcatcaaca ccgcgccgct ctcgctcgat
     2641 gacatcatcg ctgaaatcca aacggccgat gcgcaaggcc tggacgtcgc ccggctccat
     2701 tccggcgatc tctccatctg gtccgccatg ggcgagcaac tgcagcggtt gcgcgccctc
     2761 ggcatcgcct acgacatcac ccccggcgtg ccgtccttcg ccgccgccgc cgccagcctg
     2821 ggcgcggagc tgactttgcc cggcatcgcg caatcgatcg tgctcacccg cacccccggc
     2881 cgcgcctcgc ccatgccttc gggcgaaagc ctcgccgcct tcgccgccac cggggcgacg
     2941 ctcgccttgc acctctccat ccacaaactg cccgaactgg tcgccgcgct caccccgcat
     3001 tacggggcgg attgcccagt ggcggtggcc tggcgcgcct cttggccgga tgagcgcatc
     3061 ctgagcggca cgctgggaaa tatcgaagcc ctgatggacg aaaaaatcga ccgcaccgcg
     3121 ctcattctgg tcgggcgcgt gctcggcgcg gaggatttcg cccgcagccg cctctacgcc
     3181 ccggattacg accgccgcta ccgccccacc ggcgccaccc cgcgcttccc ggacccttcg
     3241 tgagcccgcc cggcctcatc atcgccgccc ccgcctccgg cgctggcaag accctcctga
     3301 ccctcggcct cgcccgcgcc tggcgccagc gcggcgtgca cgtgcagccc ttcaaatgcg
     3361 ggccggatta tatcgacccc gccttcctcg ccgccgccgc cggccggccc tgcttcaatc
     3421 tcgatagctg ggccatggcg cccggcgaga tttctactct ggcgcaaaac gccacgggcg
     3481 ccgatctcgc attggcggaa ggctccatgg gtctgttcga cggcgtggcc cgcgcgggcg
     3541 ccagcggcag cggcgcctcg gcggacatgg cttcgttact cggctggcct gtcgtgctgg
     3601 tgctggatac gcgcggccag gcgcaaagcg cggcggcggt ggcggcgggg tttgcgcgct
     3661 tccgcgaaaa tgtaaaaatt gccggtgtgg tgttgaaccg tgtggcgagc cccaggcatg
     3721 aaaagctgct gcgcgccggc atggcgcaag tggatctacc tgtatttggc gccttgccgc
     3781 gccaggacag tgtcaaagtc ccggaacggc atctcggcct ggtgcaggca gcggagttgc
     3841 cggcgcttga agcgctgctc gacaatgccg cggagattgt cagcacccat tgcgacatgg
     3901 acgcgctgcg cgccgccgcc aatgcggctc cgtcagaggc ctccgctacc tccatccgcc
     3961 cgccaggaca gcgcatcgct ttggcgcaag acgaagcctt ttccttcatc tatcctcatc
     4021 tcctcgccgc atggcacgcc gccgggagcg agattttgcc cttttcgcct ttagggaacg
     4081 aaccgccgcc ggatgatgcc gatatttgct ggctgcccgg cggctatccc gaacttcatg
     4141 ccggcaaaat cgccgccgct tcgcattttc gcgccgggct gcgccgcttc gccgaaaccc
     4201 gccccgtgca tggcgaatgc ggtggttaca tggtgctggg cg
//
LOCUS       DASQCV010000719         2495 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1313410, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000719 DASQCV010000000
VERSION     DASQCV010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1313410"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..292)
                     /locus_tag="VEQ16_11265"
     CDS             complement(<1..292)
                     /locus_tag="VEQ16_11265"
                     /inference="COORDINATES: protein motif:HMM:NF022586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2889 domain-containing protein"
                     /protein_id="HYP64464.1"
                     /translation="MQPGYRRRILIEPAAGPGEIAGERRVTAELEDDYHRMVVTLTHK
                     DGAIIQVASEMKRSPWTLCPGAMAQLAETFTGVTLADVPKRGQKTANCTHLHD"
     gene            complement(298..1455)
                     /locus_tag="VEQ16_11270"
     CDS             complement(298..1455)
                     /locus_tag="VEQ16_11270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HYP64465.1"
                     /translation="MAAEAYITGIGQSQVGQKLTRHPLLLTMDAAREALADAGLTLAD
                     IDGISTYPGKMSGYLGFSPVGTEDLIDALHLKVRWYNGGMETSAQLGAIATAAAAVKA
                     GLARHVLCFRTVYEAAAMARPQDYPMNRAPRVDGGTQWTAPFNATSAVTWVAQYAMRH
                     VKKYGLKREQLAQISLTDRKNALLNPRALVREPLTLEQYMEARLIAEPMCLFDCDRFS
                     DASTVIIVSAGDALGDVKATPIRIAAAAYRSERHSWDQTEFMASYPTGAELWKNTDYK
                     PKDVDTVQLYDGFAFLTLTWLEGLGFCGVGEGGKFIEGGHRIALDGELPLNTFGGQIG
                     AGRLHGFGFAHESVVQLRGQGGERQIKGDPKVAVAASGGGPLASALLLARD"
     gene            complement(1459..1863)
                     /locus_tag="VEQ16_11275"
     CDS             complement(1459..1863)
                     /locus_tag="VEQ16_11275"
                     /inference="COORDINATES: protein motif:HMM:NF013920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold domain-containing protein"
                     /protein_id="HYP64466.1"
                     /translation="MSSSRPLPRLDPDNRFFWTSGEDGKLRFLQCQDCKSFLHPPRPI
                     CFNCLSENVAPAVVPGTGVVDTFTVNHQKWSPNMEVPFVIARVAIDGAPGVFLTTNII
                     DCPVDAVDIGDKVEVSFLQQDDVWLPLFKKVG"
     gene            complement(1872..>2495)
                     /locus_tag="VEQ16_11280"
     CDS             complement(1872..>2495)
                     /locus_tag="VEQ16_11280"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HYP64467.1"
                     /translation="ADAMRETLEARRKEPKDDLISLLWQSEIDGKPMTMELMEDYGVL
                     LFVAGLDTVINGIGYGIRHLALNPDFQNELRANPKLIPEAAEEILRRYTFTAPVRAVA
                     KDTELGGWQMKKDERVIIFLPGADLDSREFPNPEKFDMNRENKMHIAFGVGPHRCLGS
                     HLARVELQVVYEEILARLPVFRLDENKPAKFHAGNILAIDSLPIRWD"
BASE COUNT          446 a          764 c          804 g          481 t
ORIGIN      
        1 ggtcatgtag gtgggtgcaa ttggccgtct tctggccgcg cttggggaca tcggccagag
       61 tcacgcctgt aaaagtctcg gccagctggg ccatcgcgcc agggcaaagc gtccagggtg
      121 agcgcttcat ctcgctcgcc acctggatga ttgccccgtc cttgtgggtg agggtgacca
      181 ccatgcggtg atagtcatcc tccagctccg ccgtcacccg gcgttcaccg gcgatttcgc
      241 cggggcccgc tgcgggctcg atgaggatgc ggcggcgata gcccggctgc atggcgctta
      301 gtcccgcgcc agcagcagtg cggaggcgag cggcccgccg cccgaagccg ccacggccac
      361 tttcgggtcg cccttgatct gccgttcgcc gccctggccg cgcagctgca ccacggattc
      421 atgggcgaag ccgaatccgt gcaggcgccc ggcgccgatc tgcccgccga acgtgttcag
      481 cggcagctcg ccatccagcg cgatgcgatg tccgccctcg atgaatttgc caccttcgcc
      541 aacgccgcag aagcccaagc cttcgagcca ggtgagggtg aggaaggcga agccgtcata
      601 gagctgcacc gtatccacat ccttcggctt gtagtcggtg tttttccaaa gctccgcgcc
      661 ggtggggtag gaggccatga attccgtctg gtcccagcta tggcgttcgg agcggtaggc
      721 agcagccgcg atgcggatcg gcgtcgcctt cacatcgccc aaagcatcgc cggcggagac
      781 gatgatgacg gtcgaagcgt cggaaaaacg gtcgcaatcg aacaggcaca tcggctcggc
      841 gatgaggcgc gcttccatgt actgctccag cgtcagcggc tcgcgcacca aagcgcgcgg
      901 gttgagcagc gcgttcttgc ggtcggtgag ggatatctgc gccagttgct cgcgcttcag
      961 cccgtatttc ttcacatgcc gcatggcata ttgcgcgacc caggtgacgg cggaggtggc
     1021 gttgaagggc gcggtccatt gtgtgccgcc atccacgcgc ggggcgcggt tcatcgggta
     1081 gtcctgtggg cgcgccatgg cggcggcctc gtatacggtg cggaagcaga gcacatggcg
     1141 cgccagcccc gccttcaccg cggcagcggc cgtggcgatg gcgccgagct gcgcggaggt
     1201 ttccatgccg ccattatacc agcgcacttt cagatgcagc gcgtcgatga ggtcttccgt
     1261 gcccaccggc gaaaagccga gatagccgga cattttcccc ggataggtgg aaatgccgtc
     1321 aatatcggcg agcgtcaggc cggcatcggc caaagcctcg cgcgccgcat ccatggtcag
     1381 cagcagcggg tggcgggtca gcttctggcc gacctgcgac tggccgatgc cggtgatgta
     1441 agcttcagca gccatgattc agcccacctt cttgaacaga ggcagccaga catcatcctg
     1501 ctgcaggaac gagacttcca ctttgtcgcc gatatcgacc gcatccaccg ggcagtcgat
     1561 gatgttggtg gtgaggaaca cgccgggcgc gccatcgatg gcgacgcggg cgatgacgaa
     1621 cggaacctcc atattggggc tccatttctg gtgattgacc gtgaatgtat cgacgacccc
     1681 tgtgcccggc accaccgccg gcgctacatt ttcagaaagg cagttgaagc agatggggcg
     1741 cggcggatgc aggaagctct tgcaatcctg gcattgcagg aatcgcagtt tcccatcctc
     1801 cccgcttgtc cagaaaaacc ggttatccgg atcaagccgg ggcagaggtc gtgatgatga
     1861 cattgcttaa attaatccca acgtatcggt agtgaatcaa tggcgaggat gttgccggca
     1921 tggaatttcg ccggtttatt ttcgtccagc cggaagaccg gcaggcgggc gagaatttct
     1981 tcgtagacga cctgcaattc gacgcgcgcg agatgcgagc cgaggcagcg atgcgggccg
     2041 acaccgaacg cgatatgcat cttgttctcg cggttcatgt cgaatttttc cgggttcggg
     2101 aattcgcgcg aatccaggtc ggcgccgggc aggaagatga tcacccgctc gtctttcttc
     2161 atctgccagc cgcccagctc cgtatccttg gccacggcgc gcaccggtgc tgtgaaagtg
     2221 tagcggcgca ggatttcctc cgcggcctcg gggatgagtt tgggattggc gcgcagctcg
     2281 ttctggaaat cgggattcag cgcgagatgg cggatgccat agcctatgcc gttgatgacg
     2341 gtatccagcc cggcgacgaa gagcaaaacg ccgtaatcct ccatcagctc catcgtcatc
     2401 ggcttgccgt cgatttccga ctgccagagc aggctgatga gatcgtcctt cggttccttg
     2461 cggcgggcct caagggtttc gcgcatcgca tcggc
//
LOCUS       DASQCV010000720        10837 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1646247, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000720 DASQCV010000000
VERSION     DASQCV010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 10837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10837
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1646247"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..643)
                     /locus_tag="VEQ16_11285"
     CDS             complement(<1..643)
                     /locus_tag="VEQ16_11285"
                     /inference="COORDINATES: protein motif:HMM:NF012589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY family carbohydrate kinase"
                     /protein_id="HYP64468.1"
                     /translation="MQKYLLGIDLGAGSLKASIIDETGRLKGEAAHQVTTSIPRFGWS
                     EQSPSEWFAALCAAVPAALEAAALPASAIAGIGISAGAHIPVLTDEAGIVLRPAIMWN
                     DQRAAAEAAALNEKASAKIIASSLNRANPTWTLAMLAWLQANEPATMARAKRLYLAKD
                     YLRYCLTGTWETDFSDAIGALLADNETKNWSPALAGLINLDLSLLPPIVAPEHI"
     gene            690..1697
                     /locus_tag="VEQ16_11290"
     CDS             690..1697
                     /locus_tag="VEQ16_11290"
                     /inference="COORDINATES: protein motif:HMM:NF025587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate and iron-dependent oxygenase
                     domain-containing protein"
                     /protein_id="HYP64469.1"
                     /translation="MSQTIELDPALQAARLCVTQIPVIDVSPLRGAPGRAEMVEAIGR
                     ACREIGFFYAIGHGVAEARIAEVYAEAKRFFDLPVAEKEKIAIERSPCHRGWFRLGGE
                     NLDPAQQAEGDFKEGLKIGRDLPVTHERVLAGLPLHGPNQWADLPGWKGVMQGYYDEM
                     VALGRKMMGAFAEALGLEAGFFDPWLGVTMTTLGALHYPPQHGRITEARIGAGAHTDY
                     GCFTFLHQDAAGGLQVKRRDGLWIDAPPVVGSFVVNIGDMLERWTNGVFCSTPHRVVN
                     VSGADRYSLPFFFDPDFYAPVECLPTCLAPGEVPRFKPTTAGAHMLEKIAESFEYAQK
                     R"
     gene            1988..2272
                     /locus_tag="VEQ16_11295"
     CDS             1988..2272
                     /locus_tag="VEQ16_11295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64470.1"
                     /translation="MGRIASEWNDLEKIVRDKLSSRGLKTDELGVSGLLKTAYDQKYI
                     TREEYNSLLGLNAMRNLAMHGPSGEIDDKRTQDFLIMAEAIKTVLFITDR"
     gene            complement(2339..2791)
                     /locus_tag="VEQ16_11300"
     CDS             complement(2339..2791)
                     /locus_tag="VEQ16_11300"
                     /inference="COORDINATES: protein motif:HMM:NF016001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family deazaflavin-dependent
                     oxidoreductase"
                     /protein_id="HYP64471.1"
                     /translation="MSEQGQAGNRMPPRWVLQFLSKSHVFLNRATGGHAFNTFGGDEV
                     CFVTMRGAKSGRQVTLPLMYIPYKDGVLLVASQGGAPKNPLWYNNIFKHPEIEVRHRG
                     KLMKLRARLATTEEKPSLWPICDAAYAPYADYRARTSRDIPIFVCEAT"
     gene            complement(2921..3379)
                     /gene="msrB"
                     /locus_tag="VEQ16_11305"
     CDS             complement(2921..3379)
                     /gene="msrB"
                     /locus_tag="VEQ16_11305"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HYP64472.1"
                     /translation="MNRRFLLLLLASTVLAAPRRVLAAYEVTHTDAEWRKLLAPDVYN
                     ILRQAGTEPPFSSPLLNEKRPGTYKCAGCALPLFSSKTKYDSGEGWPSFYAPLPNAVL
                     TQDDNSLGMDRTEVHCRRCGGHLGHVFTDGPPPTGLRYCIDGLALTFAPA"
     gene            complement(3376..5373)
                     /locus_tag="VEQ16_11310"
     CDS             complement(3376..5373)
                     /locus_tag="VEQ16_11310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019016627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HYP64473.1"
                     /translation="MRNVLGEASSPYLLQHKDNPVHWQIWGQEALQAAQRLNRPILLS
                     IGYAACHWCHVMAHESFEDPGVAEIMNAHFVSIKVDREERPDIDQIYMTALHSIGEQG
                     GWPLTMALTPAGEPFWGGTYFPPTSRFGRPSFTQVLNALARAWREDQDSITRSSSAIT
                     EALAASAATIPGPVPRPETLDLIRSAYLRSQDWHQGGFSGAPKFPNIPIYRFLWQEAF
                     RTGDARAAEAVDLLLSRMSQGGIYDHLGGGYARYATDEAWLIPHFEKMLYDNALILEM
                     LALAHARAPNPLYTARARETVGWLTRDMAAEGAFAASEDADSEGEEGKFYTWTREEVA
                     GILGDGTEFFAAHYPLPAHGNWEEKIILERTAPFGAEDRLAPMRAKLLAVRSTRIRPG
                     RDDKILADWNALTIAALARASAVFNEPGWLTLAESVFDAILAQMGQPDGRIAHAMRHG
                     KISALGLLEDQAAMLRAALALYQATGNTARLDQGLRILAATEQNFADGTGAFFMSAAD
                     AADIFAPRARPVQDGPTPSGIGVMAKNYALLHHLTGSATYRAKAEAILSAYGGKPERL
                     GGAPLLLAATDTLENTACIVITGDARDLAATALAAPDPAIVVLQISGGEELPPDHPAH
                     GKPAGARAAYICRAGSCSLPVSTPDELRALLRPGPSSRSAP"
     gene            5431..5769
                     /locus_tag="VEQ16_11315"
     CDS             5431..5769
                     /locus_tag="VEQ16_11315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011630721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S) ferredoxin domain-containing protein"
                     /protein_id="HYP64474.1"
                     /translation="MGERLDSDPPLFFETHIFVCGNRRPDGHKRGCCASKGSEKIRDY
                     MKARVKELGIANVRVNQSGCLDRCELGPCAVFYTEGVWYRLDSFEAVDAVIQKHLIEG
                     GRVEELMLPD"
     gene            complement(5882..7300)
                     /locus_tag="VEQ16_11320"
     CDS             complement(5882..7300)
                     /locus_tag="VEQ16_11320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HYP64475.1"
                     /translation="MSTIIRSGERLKRDSLGLQQIIASTLANIAPAMSFFFGFGLIVS
                     GAGVGAPVTILVAMVVILFLTNTLAQFSRYRPSTGSFVTFIGMSFGPVAGAAASLFVV
                     TGYCIAASSVIVISGGWASQTLQVFLGIHVPWQLLSVIATGIVGLLVSRGVSLSTTWA
                     AIFFYFELILLLIGAVIMLVAHHGAMSWSPLLFSSVTGGWKGIGLGFPLAIYLFIGWE
                     NSAMLAEETTNPRRNVPRALITGTLSIGILYIFLAFATETAFNHNATAISNSSIPFVD
                     AFKASAAGLLIVAYLAGVTSIFSSLIGLTNAQARILFNSSREGLLPAFFGKIHPQHRT
                     PHTAMWTYIIVALLIVLFFGTFYAIDPVTLFGDTGTLGTIPVVVTYLITNLALPVYML
                     RYHRNEFNAVWHLIVPVLGTAAMLFPLYGLVEPGQPYPFNIYPYLSLGLLVLSLIYGF
                     ILSKRDPELVQRIGSYVADEEY"
     gene            complement(7383..10613)
                     /locus_tag="VEQ16_11325"
     CDS             complement(7383..10613)
                     /locus_tag="VEQ16_11325"
                     /EC_number="1.2.1.88"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003842 - 1-pyrroline-5-carboxylate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006562 - proline catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamate gamma-semialdehyde dehydrogenase"
                     /protein_id="HYP64476.1"
                     /translation="MSGTQNVIGTVEQAPLRRAISVACRLPEAECIAALLPAATLPPE
                     AQQAALAMAADLVQALRARQPSRLAALLHAYPLGSKEGQALMELAEALLRIPDLATRH
                     DLLRDKLVGRHWHANPELRLAASLAASPLWPLAAPIVRYAAVRAVREMANAFVLGETM
                     VEALPRIMAGFRYSYDMLGEAALTVEEADQYESAYESAISAARNGGTIYENDGVSIKL
                     SALHPRYCRTQRARVMAELLPRLTRLAQLARDRNIGLTIDAEEADRLDLSLDLLQALC
                     EADALSNWNGLGLAVQAYQKRAPAILDFCADLARGTGRRLMVRLVKGAYWDSEIKQAQ
                     ISGHADYPVFTRKAHTDISYLACARKLLEAGPLFFPQFATHNALTMAAIHAMAGEGDY
                     EFQCLHGMGEDLYEEWRKRAPIPCRIYAPVGPHARLLAYLSRRLLENGANGSFINQLH
                     DHSRPIPDILRDPVEATLAENAPGAPHPSIPLPRNLFGIARRNSAGLDLTDEPTIASL
                     ESNLTRDLPWPKIHEATPAILDAAFTAATSYKPPPPAARHAILLGAADAIAQHHETLL
                     NFLVREGAKTIPAALAELREAEDYCRYYAAQIKDWQKQTHIPLGPVICISPWNFPLAI
                     FLGQIAGAFAAGNAVLAKPAEETPSIAAYIVSILHQSDIPRDALHLIQGDGTVGATLA
                     ADPRTRGVVFTGSIAAARAIQETLSRRINPGGVPVPLIAETGGQNAMIADSSALPEQL
                     IADILFSAFDSAGQRCSALRLLCLQRELVPLVLPRLRAALRQLTTDNPALLATDLGPV
                     INAAAQAKILTHLESCRDAGYRITQGPAPARPNFVPPTIIEIPDLSCLREEIFGPVLH
                     VLSCRRAALPHLPRRINALGYGLTFGLHSRLESRTRQLAGAIHAGNIYVNRNIVGAVV
                     GVQPFGGEALSGTGPKAGGPLYVHRLLRTGPACWPLQGELPGPVGERNLYRLQPRRVL
                     CSAKTSLGHAAQLEAVKAAGARAVFRQDDDFSAVLLEGEAAEVQALAAALATRPGPLI
                     QIVALSSAALAAGALYNPAWLVHERSICVNSAAAGGNAALMAAITP"
BASE COUNT         2083 a         2885 c         3868 g         2001 t
ORIGIN      
        1 caatatgctc aggtgcgacg atgggcggca ggagcgaaag atcgagattg atgagcccgg
       61 ccaaagcagg cgaccagttt ttcgtttcgt tgtcggcgag cagcgcgccg atggcatcgg
      121 aaaaatccgt ctcccatgtg ccggtgaggc agtagcggag gtaatctttc gccagataga
      181 gccgcttcgc gcgcgccatg gtggcgggct cgttggcctg cagccaggcg agcatggcga
      241 gcgtccaggt ggggttggcg cgattgagag agctggcgat gatttttgcg cttgccttct
      301 cgttcagggc cgcggcctcg gcggcggcac gctggtcgtt ccacatgatg gcggggcgca
      361 gcacgatgcc ggcctcgtcc gtgagcacgg ggatatgcgc gcccgcggaa atgcctatgc
      421 cggcgatggc gctggccggg agggcggcgg cctcgagcgc cgcggggacg gcggcgcaga
      481 gggcggcaaa ccattcggag ggggattgct ctgaccagcc gaagcggggg atggaggtgg
      541 tgacttggtg cgcggcctca cccttgaggc ggccagtttc gtcgatgatg ctggccttca
      601 gactgccggc gccgagatca atgccgagga ggtatttttg caatgctttc ccctggaaag
      661 gtttccgccc ggaggttagc attgccgcca tgtcccagac catagagctt gaccccgctt
      721 tgcaggcggc acgtttgtgc gtgacgcaga tcccggtgat tgatgtttcg cccctgcgcg
      781 gcgcgccggg gcgggcggag atggtggagg cgattggccg ggcctgccgg gaaatcgggt
      841 ttttctacgc aataggccat ggcgtggcag aggcgcggat tgccgaggtt tatgccgagg
      901 cgaagcggtt ttttgatttg ccggtggcgg agaaggagaa gatcgccatc gagcgctcgc
      961 cctgccatcg cggctggttc cggctggggg gcgagaattt ggacccggcg cagcaggcgg
     1021 agggggattt caaggagggg ctgaaaatcg ggcgcgacct gccagtgacc cacgagcgcg
     1081 tgctggcggg gctgccgctg cacgggccga accagtgggc ggatttgccg ggctggaagg
     1141 gcgtgatgca gggctattat gacgagatgg tcgccttggg tcgcaagatg atgggcgcct
     1201 tcgccgaggc gctggggctg gaggcagggt ttttcgaccc ctggcttggt gtaaccatga
     1261 ccactttggg cgcgctgcat tatccgccgc agcatgggcg gattacggag gcgcggattg
     1321 gggccggggc gcatacggat tatggctgtt ttaccttcct gcaccaggat gcggctggcg
     1381 ggctgcaggt gaagcggcgg gatgggctgt ggattgacgc gccgcctgtg gtggggagtt
     1441 ttgtggtgaa tatcggcgac atgctggagc gctggacgaa tggggtgttc tgctccacgc
     1501 cgcaccgggt ggtgaatgtg tctggggcgg acaggtattc gctgccgttt ttctttgatc
     1561 ctgattttta tgcgccggtg gagtgtttgc cgacttgttt ggcgccgggg gaggtgcctc
     1621 ggttcaagcc gacgacggcg ggggcgcata tgctggagaa gattgcggag agttttgagt
     1681 acgcgcagaa gaggtagcag gatggaggct aaatatgaac gtactcgatt tcgttgcttc
     1741 agtcataaaa tcgttgattt gacctgctct cattttattc ctggtctttt tctttgccaa
     1801 acagattaag gatcttctct cgtcattaaa agaattctcc ctgtcaaaag acggattcgc
     1861 aggaaaattt gatcgtgcgc aaagagaaac agaaaagaat gtcatagctg cgaaaatcga
     1921 atccgctgcc attctcccgc cagcggcccg acacctgctt gatgaaaaag agcacccata
     1981 tggaaacgtg ggccggattg cttcagaatg gaatgattta gaaaagatag tgcgtgacaa
     2041 attgagtagc cgaggattga agactgatga attaggagtt tccggtcttc taaaaacggc
     2101 ctatgatcag aaatatatta caagagaaga atataactcg ctgttgggtc ttaatgcgat
     2161 gcgtaatctt gctatgcacg gtccatctgg tgaaatcgac gacaaaagaa cacaagactt
     2221 cctgataatg gccgaagcaa taaaaaccgt tctattcata acagatcgct agaccggctt
     2281 agattaaaaa tacgatcatg gctcgacata tggactgctg cgctacgctc catccatcct
     2341 acgtagcctc acagacgaat atcggaatgt cccgcgaggt gcgggcgcgg tagtcggcgt
     2401 agggcgcgta agcggcatcg catatcggcc ataaggaggg tttttcttcg gtcgttgcca
     2461 ggcgggcacg cagcttcatg agcttaccac ggtgccggac ttcgatctca ggatgtttga
     2521 aaatattgtt ataccagagc gggtttttgg gagctccgcc ttgcgatgcg acgaggagga
     2581 cgccgtcttt atatggtatg tacatcagtg ggagcgtgac ttggcgcccg gattttgcgc
     2641 cgcgcatggt gacaaaacag acctcatcac cgccaaatgt gttgaacgcg tggccgccgg
     2701 tggcgcggtt caagaacacg tgcgattttg aaaggaattg cagaacccag cggggtggca
     2761 tcctgttacc ggcttggcct tgctctgaca ttgctgcgct cctgctatgt agtgctgctt
     2821 agtcctgggc tggtagctgg gggctgcctt cttggattta aaggtactac cttgattatg
     2881 tttcgcaagc caatggcgtc atgctgcacc tgcgatgatt tcaagcgggc gcgaacgtca
     2941 acgccaaccc atcaatacag taccgcaacc ccgtcggcgg agggccgtcc gtgaagacat
     3001 ggccgagatg cccgccgcag cggcggcaat gcacttccgt ccggtccatg ccaagggaat
     3061 tatcgtcctg tgtcagcacg gcattgggca gaggcgcgta aaagctcggc cagccttcgc
     3121 cggaatcata tttggtcttg gaggagaaca gaggcagcgc gcagccggcg catttatagg
     3181 tgccggggcg tttttcattt agtagaggcg aggagaaagg cggttcggtg ccggcctggc
     3241 ggaggatgtt gtacacgtcc ggggccagca atttgcgcca ttcggcgtcc gtatgggtga
     3301 cctcgtaggc ggccagaacg cggcgcggcg cggcgaggac ggtgctggcg aggaggagga
     3361 gcagaaatcg gcggttcatg gggcactcct tgaggaaggg ccggggcgga gcaaggcgcg
     3421 caattcatcc ggcgtggaaa cgggcagcga gcagctgccg gcgcggcaga tataggcggc
     3481 gcgcgcgccg gctggtttgc cgtgggcggg atggtccggt ggcagttctt cgccgcccga
     3541 aatctgtagc accacgatgg cggggtctgg tgcggcgaga gccgtcgccg caaggtctcg
     3601 cgcatcgccg gtgatgacga tgcaggccgt attttccagc gtatccgtgg cggcgagcag
     3661 gagcggggcg ccgccgagcc gctcgggctt gccgccatag gcggagagga tggcttcggc
     3721 tttcgcgcga tatgttgcgc taccggtgag atggtgcagc agcgcgtaat tcttggccat
     3781 caccccgatg ccggacgggg tggggccgtc ctgcacgggg cgggcgcggg gggcaaaaat
     3841 atcggcggca tcggcggcgg acatgaagaa ggcgcctgtg ccatccgcga aattctgctc
     3901 cgtggcagcg aggatacgca ggccttggtc cagccgggcc gtgttgccgg tggcttggta
     3961 cagcgccaaa gcggcgcgga gcatggcggc ctggtcttcc agcaatccga gtgcggaaat
     4021 cttgccgtga cgcatggcgt gggcaatgcg tccgtccggt tggcccattt gcgcgagaat
     4081 ggcatcgaac accgactcgg ccagggtaag ccaaccgggc tcgttgaaga ccgcactggc
     4141 gcgggccagg gcggcgatgg tgagcgcatt ccagtcggcc agaatcttgt cgtcgcggcc
     4201 ggggcggatg cgtgtggacc gcacggcgag cagtttggca cgcatgggcg cgagccggtc
     4261 ctcggcgccg aagggtgcgg tgcgctcgag gatgattttc tcctcccaat tgccatgcgc
     4321 gggcaggggg taatgggcgg cgaaaaattc ggtgccgtcc ccgagaatcc cggcgacctc
     4381 ttcgcgggtc caggtgtaaa atttgccttc ctcaccttcc gagtcggcat cctcggaggc
     4441 ggcgaaggcg ccttccgctg ccatgtcgcg ggtcagccag cccactgtct cgcgggcgcg
     4501 ggcggtatag agcgggttgg gcgcgcgcgc atgggccagc gcgagcatct ccaggatgag
     4561 ggcgttgtcg taaagcattt tttcgaaatg cgggatgagc caggcctcgt ccgtggcgta
     4621 gcgggcatag ccgccgccga gatggtcgta aatcccgccc tgggacatac gggagaggag
     4681 cagatcaacc gcctccgcgg cgcgggcgtc gccggtgcga aaagcctcct gccagaggaa
     4741 gcggtagatg gggatgttgg ggaatttcgg cgcgccggaa aagccgccct ggtgccagtc
     4801 ctgggagcgt agataggcgg agcggatgag gtcgagcgtt tccgggcgcg ggacggggcc
     4861 ggggatggtg gcggcgctgg cggcgagcgc ctcggtgatg gcgctgctgg agcgcgtgat
     4921 gctgtcctgg tcctcgcgcc aggcgcgggc tagcgcattg agcacctggg tgaagctggg
     4981 ccggccgaag cgggaggtgg gcgggaaata ggtgccgccc cagaaaggct cgccggccgg
     5041 ggtgagggcc atggtgaggg gccagccgcc ctgctcgccg atgctgtgca gggcggtcat
     5101 gtagatctgg tcgatatccg ggcgctcttc gcggtccacc tttatggaga cgaaatgcgc
     5161 gttcatgatt tcggctacgc ctggatcctc gaagctttca tgggccatga cgtggcacca
     5221 atggcaggcg gcgtagccga tggagagcaa gatgggccgg ttgagccgtt gcgccgcctg
     5281 cagcgcctcc tggccccaga tttgccaatg aaccgggtta tccttgtgct gaagcagata
     5341 gggcgaggag gcctcaccca ggacattgcg cattttgcct tactcccctt tgcccgttta
     5401 aataggacgg actgctgagg agtaacagct ttgggtgaaa gactggacag cgatccgcca
     5461 ttgtttttcg agacgcatat tttcgtgtgc ggcaacaggc ggccggacgg gcataagcgc
     5521 ggctgctgtg cgagcaaagg cagcgagaag atccgcgact acatgaaggc gcgggtgaag
     5581 gagctgggca ttgccaatgt gcgggtgaac cagtcgggct gcctggaccg ctgcgagctg
     5641 gggccctgcg cggtgtttta taccgagggg gtgtggtacc ggctggattc gttcgaggct
     5701 gtggatgcgg tgatccagaa gcatctcatc gaggggggac gggttgagga gctgatgctg
     5761 cctgattgag gcggagccga ttatagcgtt ggattggcgg agccgattat agcgttggat
     5821 tggcggcgct ggttgcgccg ctggataggc ccgggcggcg caaccgcccg ggcctattgt
     5881 ttcagtactc ttcgtccgcc acgtaagaac cgatgcgctg caccagctcc ggatcgcgct
     5941 tggagaggat gaagccgtaa atcagcgaga gcaccagcag ccccaacgac agatacggat
     6001 agatgttgaa cgggtaaggc tggccgggct cgacgaggcc ataaagcggg aagagcatcg
     6061 ccgccgtgcc cagcaccggc acgatgagat gccagacggc gttgaactca ttgcggtgat
     6121 agcgaagcat atagacaggc agcgccaggt tcgtgatcag ataggtgacg accacgggaa
     6181 tggtgccgag cgtgccggta tcgccgaaca gggttaccgg atcgatggca tagaacgtgc
     6241 cgaagaagag cacgatgagc agcgccacga tgatgtaggt ccacatcgcg gtgtgcggcg
     6301 tgcggtgctg cgggtggatc ttgccgaaga aggccggcag tagcccctcg cgcgaggagt
     6361 tgaacaggat gcgcgcctgc gcgttggtca agccgatgag cgaggagaaa atgctggtca
     6421 cgccggcaag ataggcgacg atgagcagcc cggcggccga ggccttgaag gcgtcgacga
     6481 acgggatgga agagttggaa atggcggtgg cattgtggtt gaacgccgtc tccgtggcaa
     6541 aggccaggaa gatgtaaaga atgccgatgg agagcgtgcc agtgatgagg gcgcgcggca
     6601 cgttgcgccg gggattcgtg gtttcctcag ccagcatcgc ggaattttcc cagccgatga
     6661 acaaatagat ggcgagcggg aagccgaggc caatgccctt ccagccgccg gtgacggagg
     6721 agaagagcag tggcgaccag gacatggcgc cgtgatgcgc caccagcatg atgaccgcgc
     6781 cgatcaacag caagatcaat tcgaaataaa agaagatggc cgcccaggtg gtggagaggc
     6841 tgacgccgcg cgacaccagt agcccgacaa tgccggtggc gatgacgctg agaagctgcc
     6901 agggcacatg gatgccaagg aagacctgca aagtctgcga tgcccagccg cccgaaatga
     6961 cgatcaccga agaggcggcg atgcaatagc cggtgacgac gaagagcgag gcggcggcac
     7021 ccgcgaccgg gccgaaggac atgccgatga aggtgacgaa ggaaccggta gagggccggt
     7081 agcgggagaa ttgcgccagc gtgttggtga gaaacaaaat gaccaccatg gcgacgagga
     7141 tggtaactgg cgcccccact ccggcgccgg aaacgatgag gccgaaaccg aagaagaaac
     7201 tcatggccgg ggcgatgttg gccaaggtcg aggcaatgat ctgctgcagg ccgaggctgt
     7261 cgcgcttgag gcgctctccg ctccttatga tggtgctcat gctgtgtccc tgtttgttat
     7321 taggtttcct gccaacgtcg cggcgcgcga agggtctgcc ttttatgacg atccgtcaag
     7381 catcaaggcg tgatggccgc catgagggcg gcgttgccac cggctgcggc gctgttgacg
     7441 caaatgcttc gctcatgcac gagccaggcc gggttataga gcgcgcccgc cgccagtgcg
     7501 gcgctggaga gggcgacaat ctggatcagt gggccagggc gggtggcgag cgcggcggcg
     7561 agcgcctgta cctccgcggc ctcgccttcc aacaaaacgg ccgaaaaatc atcatcttgc
     7621 ctgaagacgg cgcgggcgcc ggcggctttt acggcctcca gttgggcagc gtggccgagg
     7681 ctggttttgg cactgcacaa aacacggcgc ggctgcagcc ggtagagatt gcgctcgcca
     7741 accgggcccg gcagctcgcc ctgcagcggc cagcaggccg ggccagtgcg cagcagccgg
     7801 tgcacataaa ggggcccgcc cgctttgggg ccggtaccgg aaagagcttc cccgccgaat
     7861 ggctgcaccc cgaccacggc ccccacaatg ttgcggttga catagatatt gccggcatgg
     7921 atggcgccgg caagctgccg cgtgcgtgac tcgagtcggc tatgcaggcc gaatgtgagc
     7981 ccatagccca gcgcgttgat gcgccgcggc aggtggggca gtgctgcccg gcggcagctg
     8041 agcacatgca gcacggggcc gaaaatctct tcgcgcaggc aggagagatc ggggatttcg
     8101 atgatggtgg gcggtacgaa attgggccgc gcgggtgctg gcccttgcgt gatgcgatag
     8161 cccgcgtcgc ggcaggactc taaatgggtg agaatttttg cctgtgccgc cgcgttgatg
     8221 accgggccga gatcggtggc gagcaaggcg gggttgtccg ttgtcaattg ccgcaaggcg
     8281 gcgcgcagcc ggggcagcac gagcgggacg agttcgcgct gcaggcagag caggcgcagc
     8341 gccgagcagc gttgcccggc ggaatcgaag gcggagaaca atatatcggc gatgagctgt
     8401 tcgggcaggg cggaggaatc ggcgatcatc gcattctgac cgccggtttc ggcaataagg
     8461 ggaaccggca cgccgcccgg gttgatgcgc cggctgagcg tttcctggat ggcgcgggcc
     8521 gccgcgatgc tgccggtgaa aacaacgccg cgcgtgcggg gatcggcggc cagagtggcg
     8581 ccaacggtgc catcaccctg gatgagatgc agggcgtcac ggggaatgtc tgactggtgt
     8641 aatatcgaaa caatataggc ggcgatggag ggcgtctcct ccgccggctt ggccagcacg
     8701 gcattaccgg cggcaaaagc gcccgcgatc tggccgagga aaatcgcgag cgggaaattc
     8761 caagggctga tgcagatgac agggccgagc gggatatggg tctgcttctg ccagtctttg
     8821 atctgcgccg cgtagtagcg gcaataatcc tcggcctcgc ggagttccgc cagcgcggcg
     8881 ggaatggttt tcgcaccttc ccggacgaga aaattcagca gcgtttcgtg gtgctgggcg
     8941 atggcgtccg ccgccccgag cagtatggcg tggcgcgcgg cgggtggcgg cggcttgtag
     9001 ctggtggcgg cagtgaaggc ggcatcaaga atggcaggcg tggcttcatg gattttgggc
     9061 cagggcagat cgcgcgtgag gttcgattcg aggctggcga tggtgggttc gtcggtgaga
     9121 tcgagcccgg cggaattccg ccgcgctatg ccaaatagat ttcgcgggag cggaatggag
     9181 ggatgcggtg cgcccggagc gttctcggcg agagtcgcct ctactgggtc gcgcagaata
     9241 tccggtatgg gacgggaatg atcatgcagc tggttgatga atgagccatt ggcaccattc
     9301 tccagcagac ggcgtgagag ataagccagc agcctggcat gagggccgac aggcgcatag
     9361 atgcggcatg gaatcggcgc gcgtttgcgc cattcctcgt acaaatcctc gcccatgcca
     9421 tgcaggcatt ggaattcata atccccttcg cccgccatgg cgtggatggc ggccatggtg
     9481 agggcgttat gggtggcgaa ttgcgggaaa aaaagaggtc cggcttcaag caatttgcgg
     9541 gcgcaggcga ggtaggagat gtctgtgtgc gccttgcggg tgaaaacagg atagtccgca
     9601 tggccggaaa tttgcgcctg cttgatttcg gaatcccaat aggcgccctt gacgagccgc
     9661 accatgaggc gccggccggt gccgcgcgcg agatcggcac aaaaatcaag aatagccggg
     9721 gcgcgctttt gataggcctg cacggcgagg ccgaggccgt tccagtttga taacgcatcg
     9781 gcctcacaca aggcctgcag cagatcgagc gagaggtcga gccggtccgc ctcctcggca
     9841 tcgatggtga ggccgatatt gcggtccctg gcgagttgcg cgaggcgggt caaacgcggc
     9901 agcagctccg ccatcacgcg tgcgcgctgg gtgcggcaat agcgcggatg cagggcggag
     9961 agtttgatgg aaacgccgtc attctcgtaa atcgttccac cgttcctggc ggcggatatg
    10021 gcggattcgt aagccgattc gtactgatcc gcctcttcta ctgtaagagc ggcttcgcca
    10081 agcatgtcgt aggagtaacg gaaacctgcc ataatgcgcg gcaaagcctc caccatagtt
    10141 tcgccgagca cgaaagcatt ggccatctcg cggacggcgc gcacggcggc gtaacggacg
    10201 atgggggctg caagcggcca gagcgggctg gcggccagag aggcggcgag gcgcaattcc
    10261 gggttggcgt gccaatggcg gccaacgagc ttgtcgcgca gcagatcatg gcgggtggca
    10321 agatccggaa tgcgcagcag agcttccgcc agctccatca gtgcttggcc ttccttgctg
    10381 cccaaaggat aggcgtggag tagcgcggcc agccggctgg gctggcgggc gcgcaaggcc
    10441 tgcaccaaat ccgccgccat tgccaaggcg gcctgctgcg cctcgggcgg cagcgtggcg
    10501 gcaggcagca gggcggcgat gcattccgcc tcgggcaggc ggcacgcaac cgagatggcg
    10561 cggcgtagtg gcgcctgctc gacggtccca attacgttct gcgtcccgct catggggtta
    10621 agttggggac ggcaaccgca aaaaaagagg ccgctttttg aaaattgcgg cgcaaaaaac
    10681 ttttgtaact taggctcccg gttttgcctc cacgggacgc ttaggcttcg gcgatcagtc
    10741 ggccgctttc ctggacgccg agagcttgca aagatttaag ggcggcattc agtccgcggc
    10801 tgagctgctg ggcgcggcgg ttggcagtga cggattt
//
LOCUS       DASQCV010000721         7485 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2639524, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000721 DASQCV010000000
VERSION     DASQCV010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 7485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7485
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2639524"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1742)
                     /gene="recQ"
                     /locus_tag="VEQ16_11330"
     CDS             complement(<1..1742)
                     /gene="recQ"
                     /locus_tag="VEQ16_11330"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HYP64477.1"
                     /translation="MDIGSPVTPHELLRSVFGLRGFRGRQEAVIGHVMAGGDAIVLMP
                     TGGGKSLCYQLPSLSRPGLGVVVSPLIALMRNQVASLRQLGVNAAALNSAISQEEKSQ
                     IWQDMRSGALDILYVAPERLMMPEFLEVLSRRQISLIAIDEAHCVSQWGHDFRKEYLM
                     LAELKERFPGVPRVALTATADVQTREEIRRRLALEGAEMFLSSFDRPNIRYNIAPKTS
                     PMRQLLAFLKTHEGESGIVYCLSRNAVEETAAALNNHDIRALPYHARLDADTRAKNQD
                     AFLAAEDGLVLVATIAFGMGIDKPDVRFVVHMDLPGSLEAFYQETGRAGRDGQPAETM
                     LLYGMQDLMLRKKMINDGEAPEEVKRVELAKMEALLGVCETAGCRRQAILGCFGETLP
                     EPCGNCDSCISPAETWDATVPARKALSAMLRTGQRFGVGHLTDVLLGVETDKIIRFGH
                     EKLPTFGVGKELDRKGWQSLFRQLAARGVVETDHENYGALVMTVAGRPILRGEEEVHL
                     RRDVKVRTSKRADRAFAAGGATALFELLRQERARIAKEQRVPAYVIFHDSTLSAIAEA
                     KPGSLAALAEVPGMG"
     gene            complement(1799..3733)
                     /gene="acs"
                     /locus_tag="VEQ16_11335"
     CDS             complement(1799..3733)
                     /gene="acs"
                     /locus_tag="VEQ16_11335"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HYP64478.1"
                     /translation="MSDAEIIPVKPEIAAHALVNKARYEDMYRRADSEPDRFWAEEAK
                     RIDWITPPTKIKNTSFSGDVSIKWFEDGTLNAAANCLDRHLNERGDQVAIIWEGDDPN
                     VSATVTYRELHEKVCRLANVLTAQGVRKGDVVTIYLPMVVEAAVALLACARIGAIHSV
                     VFGGFSPDSLANRIQDCGSIALITADEGRRGGRKVALKANADEALKTCPTVKTVLVVK
                     ITGGAVEMQPSRDISYEDACAAASPNHAALPMNAEDPLFILYTSGSTGKPKGVLHTTG
                     GYLVWASFTHQYVFDYHPGEIFWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYP
                     SSSRFWEVIDKHNVNIFYTAPTAIRALMRDGEGPVKKTSRKSLRILGTVGEPINPEAW
                     LWYDRVVGEHRCPIVDTWWQTETGGILITPLPGAIALKPGSATLPLPGVKPLLVDGEG
                     NELHGATEGNLCISDSWPGQMRTVYGDHPRFVQTYFSTFKGLYFTGDGARRDEDGYYW
                     ITGRVDDVINVSGHRMGTAEVESALVAHHAVAEAAVVGYPHDLKGQGIYAYVTLVADA
                     EPSEELRKELIAWVRREIGPIAAPDVIQWAPGLPKTRSGKIMRRILRKIAANETDSLG
                     DTSTLADPGVVKELVDNRAA"
     gene            4068..4271
                     /locus_tag="VEQ16_11340"
     CDS             4068..4271
                     /locus_tag="VEQ16_11340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010507660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HYP64479.1"
                     /translation="MATGTVKWFNTTKGYGFIVPQDGGKDVFVHITAVQSAGLRGLNE
                     GQKISYEVAMERGKAAAINLKTV"
     gene            4505..6136
                     /locus_tag="VEQ16_11345"
     CDS             4505..6136
                     /locus_tag="VEQ16_11345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HYP64480.1"
                     /translation="MPDFIPAPTAAGEILDKAVQKFGPLKALDFLGRRMDYAELGRLT
                     NAAAAGLQKLGVVKGTKVGLCLPNCPYSIIMYFAILKAGGTVVNFNPLYTLKEIETMV
                     REAELDMMVTTDVAVVFNNIGKLAAQGMFKRVIICPLSEMLPWAKGLAMRLFARKSLG
                     DVPDHAPYMQFRKLIAGQSVPTPVAVDPLHDMAVLQFTGGTTGTPKAAALSHANITVN
                     LQQSLLVMPGLKEGQERFLALLPFFHVFCMTAVMNLGLTIGAELILLPKLDIKQLMAT
                     LYKRKPTVVPGVPTLFTAISNAAEKSGKTDLSFIRLCISGGAALSAEVKDRFERISGS
                     HIMEGYGLSETSPVLCFTRLGQEKPGTVGPAVPGTTLEIRDPANPSILIPQGETGEIC
                     ARGPQVMLGYYKQPEETAFVFTDGAFRTGDVGYLDADGCLFIVDRLKDVIICGGFKVY
                     PRVIEEAAYQHPSVQDAVVIGLPDTYRGQTPKLYVTLRPGTTLTEDELIAFLKPNLNP
                     IEIPKKVEIRESLPKTMVGKFSKKELLAEEAQKSG"
     gene            6348..7295
                     /locus_tag="VEQ16_11350"
     CDS             6348..7295
                     /locus_tag="VEQ16_11350"
                     /inference="COORDINATES: protein motif:HMM:NF024946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HYP64481.1"
                     /translation="MLSVAFALAPCGVSRASDPLPGDAEAPPSNTNLLLYYNIFTNAG
                     VLEPPHGDGYAKDTRVSMNIQALRYIRTFNIAGMLSGVQVVQPYAIFLGDQVRGLPVM
                     PPSGGPGRVSLTHSNGFLQPSFGAFIFPIAHPATGTYFVTGFWFSPPIGQYNQNANLT
                     ITQNLWNGELEAGARTLLFGTPDSQYLGAELWGEGYIYGSNDDATLAGIGLPGPARLS
                     QQPTAEIRFYLPYQFYPATRAKFIPGIYQSFGGKQYYTLPNGSRIDAGTRTQETQLRF
                     MLSSFLSRHWQILLNGQFDVASHGAPLQRELELRVVAAF"
BASE COUNT         1466 a         2435 c         2178 g         1406 t
ORIGIN      
        1 cccattcccg gcacctccgc cagcgccgcc aggctgccgg gcttggcctc ggcgatggcc
       61 gaaagggtgg aatcatgaaa aatcacatag gccggcacac gctgctcctt ggcaatgcgc
      121 gcccgctcct gccgcagcaa ctcgaacaag gccgtcgccc cgcccgcggc aaaggcccgg
      181 tcagcccgct tggaggtgcg caccttcaca tcccggcgca gatgcacctc ctcctcgccc
      241 cgcaaaatgg gccgcccggc taccgtcatt accagcgcgc cgtaattctc atggtccgtc
      301 tccaccacgc cccgcgccgc cagctgccgg aaaagcgact gccagccctt acgatccaac
      361 tccttgccca cgccgaaagt gggcaatttt tcatggccaa aacggataat tttgtccgtc
      421 tccaccccca gcagcacatc cgtgagatgc cccacgccaa aacgctgccc cgtgcgcagc
      481 atggccgaga gtgccttgcg cgccggcacg gtcgcatccc aggtctcagc cgggctgata
      541 cagctgtcgc aattgccgca cggttcaggc agcgtctccc cgaaacagcc gagaatcgcc
      601 tggcgccggc accccgccgt ttcgcacacg ccgagcaaag cctccatctt cgccagttcg
      661 acgcgcttca cctcctccgg cgcctcgcca tcattgatca tcttcttgcg cagcatgagg
      721 tcctgcatgc catagagcag catcgtctcc gccggctgcc catcgcgccc ggcgcgcccg
      781 gtctcctggt aaaacgcctc caaactgccc ggcaaatcca tatgcaccac gaagcgcaca
      841 tccggcttgt cgatgcccat gccaaacgca atcgtcgcca ccagcaccaa cccatcctcc
      901 gcggccagaa acgcatcctg gttcttcgcc cgcgtgtccg catccagccg cgcatgataa
      961 ggcagcgccc gtatgtcatg attattcagc gccgccgccg tctcctccac cgcattgcgg
     1021 ctgaggcaat agacaatccc gctctccccc tcatgggttt tcaaaaacgc caaaagctgg
     1081 cgcatcggcg aggttttcgg cgcgatattg taacgtatat tcggccggtc gaagctggac
     1141 agaaacattt ctgctccctc cagcgccagc ctgcgccgta tctcctcgcg cgtctgcaca
     1201 tccgccgtcg ccgtcagcgc cacgcgcggc acaccaggaa accgctcctt cagctcggcc
     1261 agcatcagat attccttgcg gaaatcatgc ccccactggc tcacgcaatg cgcctcgtcg
     1321 atcgcgatca gcgaaatctg ccgccgcgac agcacctcca gaaattccgg catcatcagc
     1381 cgctccggcg ccacatacag aatatccagc gcgcccgagc gcatatcctg ccagatctgg
     1441 ctcttctcct cctggctgat cgccgaattc agcgccgccg cattcacccc cagctgacgc
     1501 aacgaagcca cctggttgcg catcaacgca atcaacgggg aaaccacaac ccccaacccc
     1561 ggccgggaca aggacggcag ctggtaacaa agcgacttgc ccccgcccgt cggcatgagc
     1621 acaatcgcgt cgcctcccgc catcacatgg ccaatcaccg cctcctgccg cccccggaag
     1681 ccgcgcaggc caaaaacgct gcgcaacaac tcatgcggcg tgacgggaga accaatgtcc
     1741 atgagggaca aggtagactg ccggggcgtt gtcagggaag ggggcaaagc cccctgcctc
     1801 acgcagcgcg gttgtcgacc agttccttga cgacaccggg gtcagccagc gtcgacgtat
     1861 cgccgaggct gtcggtttcg ttggcggcga ttttgcgcag gatacggcgc atgattttgc
     1921 ccgagcgtgt tttcggcaag cctggggccc attggatgac gtcaggcgca gcgatggggc
     1981 cgatttcgcg ccgcacccag gcgatgagtt ccttgcgcag ctcttcgctt ggttccgcat
     2041 cagcaacgag tgtgacatag gcgtagatgc cctggccttt caggtcgtgc gggtagccaa
     2101 ccacggcggc ctcagccact gcgtggtgag cgacgagggc ggattccacc tcggcggtac
     2161 ccatgcggtg gccagagacg ttgatgacat catcaacgcg gccggtgatc cagtagtaac
     2221 catcctcgtc gcggcgggca ccgtcgccgg tgaagtacag gcccttgaag gtggagaaat
     2281 aggtctgcac gaagcgagga tggtcgccat agacggtgcg catctgccct ggccagctgt
     2341 cggagatgca gagattgcct tccgtggcgc cgtgcagctc gttgccttcg ccatccacca
     2401 acagcggctt cacgcccggc agaggcaggg tggcggagcc gggtttgagc gcgatggcgc
     2461 cgggaagggg cgtgatgagg atgccgcccg tttccgtctg ccaccaagta tcgacgatgg
     2521 ggcagcgatg ctcgcccacc acgcggtcgt accagagcca ggcttcagga ttgatgggct
     2581 cgccgaccgt tccgagaatg cgcagggatt tgcgtgaggt tttcttcacc ggcccctcgc
     2641 cgtcgcgcat caaagcgcgg atggcggtgg gggcggtgta gaagatattc acattgtgct
     2701 tgtcgatgac ttcccagaag cgcgagctgg aggggtagtt gggcacgccc tcgaacatca
     2761 gcgtggtggc gccgttggcg agcgggccgt agacgatgta gctgtggccg gtcacccagc
     2821 ccacatcggc cgtgcaccaa aagatttcgc cgggatggta gtcgaacaca tattggtggg
     2881 tgaagctggc ccagaccagg tagccgccgg tggtgtgcag cacccccttg ggcttgccgg
     2941 tggaacccga ggtgtagagg atgaagagcg ggtcttccgc gttcatcggc agggcggcat
     3001 ggttgggcga ggcggcggca caggcatcct cgtaggagat gtcgcggctg ggctgcatct
     3061 ccaccgcacc gccggttatt ttcaccacga gaacggtctt caccgtgggg caggttttga
     3121 gtgcttcgtc ggcattggcc ttcagcgcca ccttgcggcc gccgcggcgg ccttcatcgg
     3181 cggtgataag ggcgatggag ccgcaatcct ggatgcggtt ggcgagtgaa tccggcgaga
     3241 agccgccgaa caccacggaa tggatggcgc cgatgcgggc gcaggccagc agggccacgg
     3301 cggcctccac caccatgggc agatagatgg tgacgacatc ccctttgcgc acgccttggg
     3361 cggtaagcac gttggcgagg cggcacactt tctcatgcag ttcacgatag gtgaccgtgg
     3421 ccgacacgtt cgggtcgtcg ccttcccaaa tgatggccac ctggtcgccg cgctcgttga
     3481 gatgccggtc gaggcagttg gcggcggcat tcagcgtgcc gtcctcgaac catttgatcg
     3541 agacatcgcc tgaaaaactg gtgttcttga ttttggtggg cggcgtgatc cagtcgatac
     3601 gtttggcctc ttcggcccag aatctgtcag gttcggagtc agcacgccgg tacatgtctt
     3661 catagcgtgc cttgttgacc agcgcatggg cggcgatctc cggcttaacc ggtatgattt
     3721 cggcatccga catgatgttc ctcctgattg attttggtaa tatgggcgga ttatgcccaa
     3781 atttcagttg cacagatagg gctgttcaat ctttgaccag gatcaaggcg gtacggctgc
     3841 gtgacggttc catgaagagg cccaagattt ttgctggatt ttgagacgct ttatcacgga
     3901 atcgttgaca attccgcatc tttctgcgcg agattttagg gcaatcggtg atggcatggc
     3961 ttggtctcgc gttccgccag gacgcacaag gcaccctgag agcggttgtc cccttcagcc
     4021 atatgctggc gggggccaaa tcatgttgag gagcgacgat agaaaatatg gcgaccggta
     4081 ccgtcaaatg gttcaataca accaagggct atggcttcat cgtgccgcag gatggcggca
     4141 aggatgtgtt cgtccacatt accgccgtgc agtcagccgg cttgcgcggg ctgaatgagg
     4201 ggcagaaaat ctcctacgag gtggctatgg agcgcggcaa ggccgccgcg atcaatctga
     4261 agactgtgtg accagcctgg gacagttcct ctgtcctata tctgtccgat ccaaggattt
     4321 cagggcacat atacgcgggg ccgcgatgag cggccccgta gtttttattg ccttcggcac
     4381 gtttccgggc tagcctaacg taaagggcag gaaccatacc atgcctgtac ccggccacgt
     4441 gcttaaaaga ttggtggcca aaagattggg agaaacgatg aacggcccga ctatgccagg
     4501 cgtgatgcct gactttatcc ccgcccccac tgccgcgggc gagattctgg acaaggcggt
     4561 gcaaaaattt ggccccctca aagccctcga tttcctggga cggcgcatgg actatgccga
     4621 actcggccgg ctgaccaacg ccgccgccgc cggcctgcaa aaactgggcg tggtgaaggg
     4681 caccaaagtg gggctatgcc tgcccaactg cccctattcc atcatcatgt atttcgccat
     4741 cctcaaggcc ggcggcaccg tggtgaattt caacccgctt tatacgctca aggaaattga
     4801 gacgatggtg cgggaggccg agctggacat gatggtgacg accgatgtcg ctgtggtgtt
     4861 caacaatatc ggtaagcttg cagcgcaggg catgttcaag cgcgtcatca tctgcccgct
     4921 ctcggagatg ctgccctggg ccaagggact cgccatgcgg ctattcgcgc gcaagagcct
     4981 cggcgatgtg ccggaccatg caccctatat gcagttccgc aagctgatcg cggggcaaag
     5041 cgtgccgacg ccggtggcgg tggacccgct gcacgacatg gcggtgctgc aatttaccgg
     5101 cggcaccacc ggcacgccca aggcggcggc gttgagccat gccaatatca cggtgaattt
     5161 gcaacaatct ctgctggtca tgccgggctt gaaggaagga caggagcggt tcctggcctt
     5221 gctgcccttt ttccatgtgt tctgcatgac ggcggtgatg aatctgggcc tcaccatcgg
     5281 cgccgagctg atcttgctgc ccaagctcga catcaagcaa ctcatggcca cgctctataa
     5341 gcgcaagccg accgtggtac cgggcgtgcc aaccttgttc accgccatca gcaacgcggc
     5401 ggagaagagc gggaagacgg atctcagctt catcaggctc tgcatttccg gcggggcggc
     5461 gctttcggct gaagtgaaag acaggttcga gcggatttcc gggagccata tcatggaagg
     5521 gtacggcctc agcgaaacct cgcccgtgct gtgctttacc cgcctggggc aggaaaagcc
     5581 gggcaccgtg gggccggccg tgcctggcac caccctcgaa atccgcgacc cggccaaccc
     5641 atccattctg ataccgcaag gagaaaccgg ggagatttgc gcgcgcgggc cgcaggtgat
     5701 gcttggctat tacaagcagc ccgaggaaac cgccttcgtc tttaccgacg gcgcgttccg
     5761 caccggcgat gtcggctatc tcgacgcgga tggctgcctg ttcatcgtcg accgcctgaa
     5821 ggacgtcatc atctgcggcg gcttcaaggt ctatccccgc gtcatcgagg aggcggccta
     5881 ccagcaccct tcggtgcagg acgctgtggt gatcggcctg ccggacacct atcgcggcca
     5941 gacgccgaag ctttacgtga cactgcgccc aggcaccacg ttgactgagg acgaactgat
     6001 cgccttcctg aagccaaacc tcaatcccat cgagattccc aagaaagtgg aaatccgcga
     6061 gagcctgcca aagacaatgg ttggcaaatt ctccaagaaa gaactcctcg ccgaagaggc
     6121 ccagaaatcg ggataagatg acaccccggc aggggagggt ttccccctgc accccgtcta
     6181 ggacggacaa gcatcgcgcg atctcactgt cagttttatt gacaataccc ggcacccgga
     6241 cgacataggc accaagcggc acataagccg ccaggaggtg gagtttgggt gtaatattgt
     6301 ggcgcgggcg cgcacgcaac gtgctcgcgg ctgtcttgtc gtctgtcttg ttatcagtcg
     6361 cattcgcgct ggcgccgtgc ggcgtctccc gcgcttccga ccctctgccc ggcgacgccg
     6421 aggcaccgcc gtccaacacc aacctcctgc tctactacaa catcttcacc aatgccggcg
     6481 tgctggagcc gccgcatggc gacggctatg ccaaagacac gcgtgtttcc atgaacatcc
     6541 aggcgctgcg ctatatccgc accttcaaca tcgccggcat gctgagcggg gtgcaggtgg
     6601 tgcagcctta cgccatcttc ctcggcgacc aggtgcgcgg cctgcccgtc atgccaccca
     6661 gcggcgggcc gggacgggtt tccctcaccc atagcaacgg tttcctgcag ccttcattcg
     6721 gcgctttcat cttccccatc gctcaccccg ccaccggcac ctatttcgtc acgggattct
     6781 ggttctcccc gcccatcggc cagtacaacc aaaatgccaa cctcacgatc acgcaaaatc
     6841 tatggaacgg cgagctcgaa gccggcgccc gcaccctgct gttcggcacg ccagacagcc
     6901 aatatctcgg cgccgagctt tggggcgaag gctacatcta cggcagcaac gacgacgcca
     6961 ccctggccgg catcggcctg cccggcccgg cgcgcctcag ccagcagccc accgccgaaa
     7021 tccggtttta tctcccttac cagttctacc ccgcgacaag ggccaaattc attccgggta
     7081 tctaccaatc attcggcggc aagcaatatt acaccctccc caatggcagc cgcatcgacg
     7141 ccggcacacg tacgcaagaa acgcaattgc gcttcatgct gtcgagcttc ctctcacggc
     7201 actggcaaat ccttctcaac ggccagttcg acgtggcatc ccacggcgcg ccgctgcaac
     7261 gcgagctgga actgcgcgta gtggctgcat tctaggtttc acctgtttcg cttctcaacg
     7321 atttaacgat ccagaaaccg cttgatcccc tgcaccgcct ccgccagccc cgagcggata
     7381 atcggcgctt cctcaggaaa cgccgaaaac aaacgcgacg gcacctgcct gttcagcagc
     7441 acgaacacac ccttgtcatc cgcgcgccgt atcaaccgcc cgaac
//
LOCUS       DASQCV010000722         3006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_649463, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000722 DASQCV010000000
VERSION     DASQCV010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3006
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_649463"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..551)
                     /locus_tag="VEQ16_11355"
     CDS             complement(<1..551)
                     /locus_tag="VEQ16_11355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010508315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbbBc protein"
                     /protein_id="HYP64482.1"
                     /translation="MADKRAVPGVKPYKNAAGGWGALRATALAVRAQMDLAEAPGLLL
                     RTNKPAGFDCPGCAWPDKAHSSTFQFCENGAKAVTWEATKKRTTPEFFAAHTVTELLG
                     WSDHKLEDEGRLTHPVAYDAASDKYQPLAWDDAFSRIGTALRALPDPNMAEFYTSGRA
                     SNEAAFLYQLFAREFGTNNFPDCS"
     gene            1054..2787
                     /locus_tag="VEQ16_11360"
     CDS             1054..2787
                     /locus_tag="VEQ16_11360"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HYP64483.1"
                     /translation="MAVPVYERILQLFEAEGINTLFGIPDPNFVHMFLAAERRGWTVV
                     APHHEAAAGFMAEAASRITGKPAVAIGTLGPGIANSAPAIQCALVENSPVIYLSGQRA
                     RVTEQRVRRGRIQFVKQMPLFENSVKYAASIEYADQTDEIIRQAIRAVMGGTPGPAYI
                     EYPSHVILEELDVPEPLSPARYRLVNQGADIDRVKEAADLIRAAKNPILLVGHAVHTT
                     RMGAAVKELALLMNCPVVQTSGGTSYIEGLEDRTFQYVFSNASIEAVTESDLCLALGT
                     ELGEPVHYGRHRYWVKNEAIRKWIYVEQDPTAIGVNRPIDVPLVGDLRGVVPQLVAAL
                     KDTPRAPAPGLAKFMKDGQAELDSLAAESLTKSDGHGNLPIHTSRFVVEATKAFPKDG
                     ILIRDGGATVIFQWTYSQCKPHDVIWNQNFGHIGTGLPYATGAMLADQAATGKKRPGM
                     LITSDSSFMFHIAELETAVRTNLPLVCVVGVDNQWGLEVGVYKRTFGQGTEETGTHWS
                     KDVRFDKVAEGFGCHGEYVTKVEDIRPAIERAYASGKVGVVHVVIDPKANSEEMPKYP
                     EFRTWYAEGTQ"
BASE COUNT          560 a          898 c          971 g          577 t
ORIGIN      
        1 gagcagtcgg gaaaattatt ggtgccgaat tcgcgcgcga agagctggta gaggaaggcg
       61 gcctcgttgg aggcgcggcc ggaggtgtag aattccgcca tgttcgggtc ggggagcgcg
      121 cgcagggcgg tgccgatgcg ggagaaggcg tcgtcccatg caagcggctg gtatttgtcg
      181 ctggcggcgt catacgccac cgggtgtgtc agccggcctt catcctccag cttgtggtcg
      241 ctccagccga gcagctccgt cacggtgtgt gcggcgaaaa attccggggt ggtgcgcttc
      301 ttcgtcgcct cccaagtgac agctttcgcg ccattctcgc agaactggaa ggtggagctg
      361 tgcgccttgt cgggccaggc gcagccgggg cagtcgaagc cggcgggctt gttggtgcgc
      421 agcaacaggc ccggcgcctc ggccaggtcc atctgcgcgc gcacggccag ggctgtggcc
      481 cgcaatgctc cccagccgcc cgcggcattc ttatagggtt tgacgccggg tacagcgcgc
      541 ttatcagcca ttggcgagat cctttatccg taaacaggcc atcctggcgg catgttcaag
      601 ggtaagattt catgctcctt gtgccatttc aaggcgcgct tctgcactcg ccagaggtcc
      661 ggacaatttg gactgcttat ccggaagccg cgcgagaatg gcggcggtgg tacagcaaag
      721 ccatgctgca ttgcggcaaa acctgaatgg aaatcatcgc caaagcggta cgccacggct
      781 cgaccgggag cggagttgag tctatagctt gccgcgctgg acaaatgtcc tgacaaattc
      841 accatatgcc tcaggtgcac gaccggaggc gaaagcgagg ggcagggaac gcgaaacttc
      901 gtgcagggca ttttttccgg cgcagaagcg gcgggagcca ataggtttgg tgtgaccatg
      961 attgtcaatc caaacgcctg ttgctcgctt acagatgagg ttggagccgt ccgctctggt
     1021 ctttagatta ttagagaaaa caaggagtta attatggcag tgccagtcta tgagcgtatc
     1081 ttgcagcttt tcgaggcgga agggatcaac actttgttcg gcatccccga tccgaacttc
     1141 gtgcatatgt tcctggcggc ggagcgtcgt ggctggaccg tcgttgcccc gcaccacgag
     1201 gccgctgccg gcttcatggc cgaggccgct tcgcgcatta ccggcaagcc ggctgttgcc
     1261 atcggcacgc tcgggccggg catcgccaac tccgccccgg ccatccagtg tgccttggtc
     1321 gaaaactcgc ccgtcatcta tctctccggc caacgcgccc gcgtgacgga gcagcgcgtg
     1381 cgccgcggcc gcatccagtt cgtcaagcag atgccgctgt tcgagaattc ggtgaaatac
     1441 gccgcctcga tcgaatatgc cgaccagacg gatgagatca tccgccaggc tatacgcgcc
     1501 gtcatgggcg ggaccccagg cccggcctat atcgagtacc cgtcacatgt gattctcgaa
     1561 gagctggacg tgccggagcc cctgtcgccc gcgcgctacc gcctcgtcaa ccagggcgcg
     1621 gatatcgacc gcgtcaagga agccgccgat ctcatccgcg ccgccaagaa cccgattctg
     1681 ctggtcggcc atgccgtgca caccacccgc atgggtgcgg cggtgaagga gctggcgctg
     1741 ctgatgaatt gcccggtggt gcagacctcc ggcggcacct cttacattga ggggttggaa
     1801 gaccgcacct tccagtacgt gttctccaac gcctccatcg aggcggtgac ggaatccgat
     1861 ctctgcctcg cgctcggcac cgagctgggc gagccggtgc attatggccg tcatcgctat
     1921 tgggtgaaga acgaagcgat ccgtaaatgg atctatgtgg agcaggaccc gactgcgatt
     1981 ggtgtgaatc gtcccattga cgtgccgctg gttggcgatc tgcgcggcgt ggtgccgcag
     2041 cttgtcgccg cgttgaagga cacgccgcgt gccccggcac cgggcctggc caagttcatg
     2101 aaggacggcc aggcggagct ggattcgctg gcggctgagt cgctcaccaa gagcgatggc
     2161 catggcaatc tgcccatcca tacctcgcgc ttcgtcgtgg aagccaccaa ggcgttcccc
     2221 aaggatggca tcctcatccg cgatggcggc gctacggtga tcttccagtg gacctactcg
     2281 cagtgcaagc cgcatgacgt gatctggaac cagaatttcg gtcatatcgg caccggcctg
     2341 ccctacgcca ccggcgccat gctggccgac caggccgcca ccggcaagaa gcgccccggt
     2401 atgctcatca cctcggacag ctccttcatg ttccacatcg ccgagctgga aacagccgtg
     2461 cgcaccaacc tgccgctcgt ctgcgtggtg ggcgtggaca accaatgggg cctggaagtg
     2521 ggcgtgtata agcgcacctt tggccagggc accgaagaga cgggcacgca ttggagcaag
     2581 gacgtgcgct tcgacaaggt tgccgaaggc ttcggctgcc atggcgagta tgtgaccaag
     2641 gtggaagata tccgcccggc catcgagcgt gcttacgcct ccggcaaggt cggcgtggtg
     2701 catgtcgtca tcgatccgaa ggcgaattcg gaggaaatgc cgaaatatcc ggaattccgc
     2761 acctggtacg ccgaaggcac ccagtgattt ctgatccccc cgggtggcaa tgcccggggg
     2821 ttttcttttg ggggaataaa atgttcagcg cagaaggggg ctgtgattgc cgcaaggtac
     2881 ggtaccggat gaaggccacg ccgatggtgg tgcattgctg ccattgccgc tggtgccagc
     2941 gcgagaccgg caccgcattc gcgttgaatg ccgtcatcga gagcgcgaat gtggagttgc
     3001 tgggcg
//
LOCUS       DASQCV010000723         2670 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1480118, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000723 DASQCV010000000
VERSION     DASQCV010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2670
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1480118"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..75)
                     /locus_tag="VEQ16_11365"
     CDS             complement(<1..75)
                     /locus_tag="VEQ16_11365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010514733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HYP64484.1"
                     /translation="MSITPERRTALIAEYATAANDTGSP"
     gene            complement(101..1024)
                     /gene="truB"
                     /locus_tag="VEQ16_11370"
     CDS             complement(101..1024)
                     /gene="truB"
                     /locus_tag="VEQ16_11370"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HYP64485.1"
                     /translation="MARQKKGRKLDGWIILDKPPGITSTQAVNRVKRALDAQKAGHGG
                     TLDPLATGILPIALGAATKTVPYVMDSTKIYHFTIRFGEARDTDDAEGEVTATSDARP
                     TDDEIRAALPAFRGNIMQIPPVFSAIKVEGERAYDLARDGRPPELPPRPAQIDRFELI
                     GRPDADHAEFEVQSGKGVYMRSLARDLSRACGTVGHIAVLRRLRVGPFLENMAVPLDI
                     FLDPAHTPATLAETLRPLSTALDDIPALALNAAEFHALSQGQAISLVDLMGRIPEAAS
                     PDNGLVRITAAGRVAALARLSDGWLKPERLF"
     gene            1320..2633
                     /locus_tag="VEQ16_11375"
     CDS             1320..2633
                     /locus_tag="VEQ16_11375"
                     /inference="COORDINATES: protein motif:HMM:NF025001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYP64486.1"
                     /translation="MPGSSLTLSEPADTQSAPAESIRTESTRTESTRTESIQAPGAYG
                     ASFARPAPPAPRPVKRDKFIGFVRDEASANVLHEALMGYLPNSNQVHVVDFRSAVAFL
                     GAMTTPEIVLVDLSGEDQPMNAIMELADVVEAGTVVLTIGDQPGLNFYRTLTKGLGIK
                     DYLLKPLARGDVERTFLPVIANMADEGANLRGGRTLAVAGTRGGVGTSTIATNLAWYL
                     ANEMHRHTLLLDGELSTGTMALNLDTQAASGLAMALQTPERVDQLLIERSIFEVGDRL
                     DVLAALEALDKSVDFTPEGAANLLGTLRGRYNYVVADAGARLEPLARELLFNAQQRVI
                     VMDPSMISIRNLERLMSLPGGSNQSTRVLLVLNHAGAPGGLSQHYMEQSMGLRFDAVI
                     PDLPRVVPRCNQLGNQAAALRGPFRNGIAALGNALAVMPQAAIVG"
BASE COUNT          461 a          823 c          910 g          476 t
ORIGIN      
        1 ggggctgcca gtatcgttgg cggcggtggc gtattcggcg atgagcgcgg tgcggcgctc
       61 cggcgtgatc gacatcggga tatcccttca aatcaaaacg ttaaaacaag cgctccggct
      121 tcagccaccc atcagagagt cgggccaagg ccgcaacgcg ccctgccgcc gtgatgcgca
      181 ccagcccgtt atcgggggag gctgcttccg gaatccgccc catcagatcg accaggctga
      241 tggcctggcc ttgggagagg gcgtggaact ctgcggcgtt cagggccagg gccgggatgt
      301 cgtccagcgc ggtcgagagc ggtcgcaaag tttcagcgag agttgcgggc gtatgcgccg
      361 ggtcgaggaa aatgtccaga gggacggcca tgttctccag gaagggcccc acgcgcaggc
      421 ggcgcagcac ggcgatatgg ccgaccgtgc cgcaggcgcg ggacaggtcg cgggcgagcg
      481 agcgcatgta tacgcccttg ccggactgga cctcgaattc ggcatggtca gcgtcggggc
      541 ggccgatcag ctcgaagcgg tcgatttggg ccgggcgggg cggcagctcg ggcgggcggc
      601 cgtcgcgggc gaggtcgtag gcgcgctcgc cctccacctt gatggcggag aagacgggcg
      661 ggatttgcat gatattgccg cggaacgccg gcagggcggc gcggatttcg tcgtcggtgg
      721 ggcgggcatc cgaggtggcg gtcacctcgc cttcggcatc atccgtatcc cgtgcctcgc
      781 cgaagcggat ggtgaaatgg taaattttgg tgctgtccat gacgtagggc acggttttcg
      841 tggcggcgcc cagggcgatg ggcaggatgc cggtggcgag cgggtccagc gtgccgccat
      901 ggcccgcttt ctgcgcgtcg agcgcgcgtt tcaccctgtt caccgcctgc gtgctggtga
      961 tgcccggtgg tttgtcgaga ataatccagc cgtccagttt gcggcctttt ttctgcctag
     1021 ccatgaagtt cctgaagaat cgaaataagg ggcgctgata ggccaggagg cgcggcgggg
     1081 acaaggcgtg tgtaaaaata tctggtctgc ttggccctag agactgtttc ataagtctac
     1141 tctggcggcc gtctaggggc gtttttctcc gcgccggtgc tcgaaaaaca cccctagccg
     1201 actcaccaga gcgacttctg aaacagtctc taatcgctaa cggggtatca accattcttt
     1261 ggtgaattgg gggagcccgg aaagaatccg gcggtgattt tcgcaagcga ggacctccca
     1321 tgccgggtag cagcctaacc ctttccgagc ctgccgatac gcagagcgct ccagctgaga
     1381 gcatacgaac tgagagcact cgaactgaga gcactcgaac tgagagcatc caggcgccgg
     1441 gggcctatgg cgcgagcttc gcccgcccgg cgccgccggc gccgcgtccc gtcaagcgcg
     1501 ataaattcat cggcttcgtc cgcgacgaag ccagcgccaa tgtgctgcat gaggcgctga
     1561 tggggtatct gcccaacagc aaccaggtgc atgtggtgga tttccgcagc gccgtcgcct
     1621 tcctgggtgc catgaccacg cccgaaatcg tgctggtgga cctctccggc gaggatcagc
     1681 ccatgaacgc catcatggag ctggccgatg tggtcgaggc cggcactgtg gtgctgacca
     1741 tcggcgacca gccggggctc aatttctacc gcaccctcac gaaggggctg ggcatcaagg
     1801 attatctgct caagccgctc gcgcgggggg acgtggaacg gaccttcctg ccggtcatcg
     1861 ctaatatggc cgatgaaggc gccaatctgc gcggcgggcg cacgctggcc gtggccggca
     1921 cgcgcggggg cgtgggcaca agcaccatcg ccaccaatct cgcctggtat ctcgccaacg
     1981 aaatgcaccg ccatacgctg ctgctggatg gcgaactctc caccggcacc atggcgctca
     2041 atctcgacac ccaagccgcc tcgggcttgg ccatggcgct gcagacgccg gagcgtgtgg
     2101 accagctact catcgagcgt tcaatctttg aggtgggcga caggctggac gtgctcgccg
     2161 cactggaagc cttggacaag agcgtcgatt ttaccccgga aggggcggcc aacctgctcg
     2221 gtaccctgcg cgggcgctat aattacgtgg tggccgatgc cggggcgcgg ctggagccgc
     2281 tggcgcgcga gctgctcttc aacgcgcagc agcgcgttat cgtgatggat ccgagcatga
     2341 tctccatccg caacctggaa cggctgatga gcctgccggg cggctccaac cagagcacgc
     2401 gcgtgttgct cgtgctcaac catgccgggg cgccgggcgg actgtcgcaa cattacatgg
     2461 aacaatccat ggggctgcgc ttcgacgccg tcatccccga cctgccgcgc gtggtgccgc
     2521 gctgcaacca gctcggcaac caggccgccg ctttgcgcgg ccccttccgc aacggcatcg
     2581 ccgccttggg caacgcgctg gcggtcatgc cgcaggctgc cattgttggt tgagtgtgtg
     2641 ctgcgactcg caggagggga tagccccctg
//
LOCUS       DASQCV010000724         1671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1314343, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000724 DASQCV010000000
VERSION     DASQCV010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1314343"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..975)
                     /locus_tag="VEQ16_11380"
     CDS             complement(100..975)
                     /locus_tag="VEQ16_11380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HYP64487.1"
                     /translation="MNNADFIKRFLVTSVALIVAAIVTWQLWDYYMLAPWTRDGRVRA
                     DVVALAPDVSGPVVQVFVHDNDAVKAGDPLFQIDPARFQLALAQAQASADRAKAAMED
                     AQHTAQRYESLSASAASAQTRESAGNQAREAEAEFALAQANLGVAQLNLDRTTVRATV
                     NGTITNFSMRPGDYVNTGTPVIAIVDMDSLYVDGYFEETKLRRIALGDRATIRLMQGG
                     PALTGHVTGLAAGIADNERIATSGTLLADVNPTFTWVRLAARVPVRIQLDHVPDGVRL
                     VAGMTATVAITPSRQ"
     gene            complement(984..1190)
                     /locus_tag="VEQ16_11385"
     CDS             complement(984..1190)
                     /locus_tag="VEQ16_11385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007438470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1656 domain-containing protein"
                     /protein_id="HYP64488.1"
                     /translation="MIGEIDIFGVLFPPLLIWVGVALLLSALLRRGLAWLGVYRFVWH
                     RPLFDLCLLVILTGLVSLGVTRFF"
     gene            complement(1187..>1671)
                     /locus_tag="VEQ16_11390"
     CDS             complement(1187..>1671)
                     /locus_tag="VEQ16_11390"
                     /inference="COORDINATES: protein motif:HMM:NF016513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HYP64489.1"
                     /translation="IRSVGAAWSAERLQRANWRDVAIAAAATHERGRLTGLMMDRLGL
                     MMPRLAAVASGADAAAAGAIKDLRIGLNMIALHRAHPLLPEAAKRPCEAVFASVAAHY
                     SGDARSPAPPDLCAAIDDTIRPLLANPVAYKQALMVLSGLRSILFPGQEPPVFFKEAA
                     "
BASE COUNT          297 a          523 c          606 g          245 t
ORIGIN      
        1 aatcagttgc tctaccgact gagctaggac ggcctgggcc tgaacgaggc ctgggcgggc
       61 gtattgcaca gctgccgcga gaaatccagc cctgggtgct cactgccggg acggggtgat
      121 ggccaccgtg gcggtcatgc ccgccaccag ccgcacaccg tccggcacat ggtcgagctg
      181 gatgcgcacg ggcacgcggg cggccaggcg cacccaggta aaggtggggt tcacatcagc
      241 cagcaatgtg ccggaggtgg cgatgcgctc attatcggca atgccggcgg ccaggccggt
      301 gacatggccg gtcagcgccg ggcctccctg catcagcctg atggtcgccc tgtcgccgag
      361 ggcgatgcgg cgcagcttgg tctcctcgaa atacccgtcc acatagagcg aatccatgtc
      421 gacgatggcg atgacgggcg tgccggtatt cacgtaatcg cctggccgca tggagaaatt
      481 ggtgatggtg ccgtttaccg tggcgcgcac cgtggtgcgg tcgagattga gctgggcgac
      541 gccgagattg gcctgggcga gggcaaattc agcctcggcc tcgcgtgcct ggttgccggc
      601 gctctcgcgc gtctgcgccg aggcggcgct ggcggagagg gattcatagc gctgggcggt
      661 gtgctgggcg tcctccatgg ccgccttggc gcggtcggct gaggcctggg cttgggccag
      721 cgccagctgg aagcgggctg ggtctatctg gaagagcggg tcgcccgctt tcaccgcatc
      781 attgtcatgc acgaagacct gcaccaccgg cccgcttacg tccggggcca gggccaccac
      841 gtcggcgcgc acgcggccgt cgcgggtcca gggcgcgagc atatagtaat cccagagctg
      901 ccaggtgacg atggcggcga cgatgagcgc gaccgaagtg acgaggaaac gtttgatgaa
      961 atcggcgttg ttcatgaaga ccctcaaaaa aaccttgtca cgccgaggct gacgagcccg
     1021 gtgaggatga ccagcagaca gagatcgaac aaaggccggt gccagacgaa gcggtacacg
     1081 ccaagccaag ccaagccccg gcgcagcaaa gcggagagca gcagcgcgac accaacccag
     1141 atgagcagag gcgggaagag cacgccgaag atatcgatct cgccgatcat gcggcctcct
     1201 tgaagaaaac aggcggctcc tgcccgggga agaggatgct gcgcaggccg gagaggacca
     1261 tgagcgcctg cttataggcc acagggttgg cgaggagcgg gcggatcgtg tcgtcgatgg
     1321 cggcgcacag gtccggcggt gcggggctgc gcgcatcgcc gctgtaatgc gccgcgacac
     1381 tggcgaacac cgcctcgcag ggccgcttgg cggcttccgg cagcagcggg tgggcgcggt
     1441 gcagcgcgat catgttgagc ccgatgcgca ggtccttgat cgcgccggcc gccgcggcgt
     1501 cggcgccgct agccacggcg gcgaggcgcg gcatcatcaa cccgagccgg tccatcatca
     1561 gcccggtcag gcgcccgcgt tcatgggtgg ccgccgcggc aatggcgaca tcgcgccaat
     1621 tggcccgctg caggcgctcg gcgctccagg ccgcgcccac ggagcggatg a
//
LOCUS       DASQCV010000725         2217 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1647387, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000725 DASQCV010000000
VERSION     DASQCV010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2217
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1647387"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..535
                     /locus_tag="VEQ16_11395"
     CDS             <1..535
                     /locus_tag="VEQ16_11395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019013052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HYP64490.1"
                     /translation="AQVRVELGTRTIFNLTGPMANPAFVKRQLMGVYDPVWLRPVAET
                     LAKLGAESAWVVHGGGLDELVLDGENHVASLRQGEIREFTLCAVDAGLPTVPLAALQG
                     GDAAENAAALLDVLQGARNGYRDTILFNAAAALMVAGAVGDLREGVARAAQALDSGAA
                     LRVLETLRAASQEVSLA"
     gene            532..1341
                     /gene="trpC"
                     /locus_tag="VEQ16_11400"
     CDS             532..1341
                     /gene="trpC"
                     /locus_tag="VEQ16_11400"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004425 - indole-3-glycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006568 - tryptophan metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HYP64491.1"
                     /translation="MNKMVVEDVLARICTDKRAEVAERKASLPLDELKAAARDADKPR
                     GFGRALMDASAAGRPALITEIKKASPSGGLIREDFAPAVLAQSYEEGGAACLSVLTDQ
                     KYFHGSAEDFQVARAAVRLPVLRKDFMLEPWQIYESRVLGADCILLIMAALEDQEARD
                     LEALARALDMDVLVEVHNEDELERALGLQTPLLGINNRNLKTMVTSLETTEMLSCLCP
                     PDRFLVSESGIKTNEDVKRLQKVCVQGFLVGESLMREPDVKAAVGRLLGTG"
     gene            1338..1808
                     /gene="moaC"
                     /locus_tag="VEQ16_11405"
     CDS             1338..1808
                     /gene="moaC"
                     /locus_tag="VEQ16_11405"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HYP64492.1"
                     /translation="MSRLTHISEDGAARMVDVSAKAETLREATAKGQVAMLPETLALI
                     KDGTAKKGDVLAVARVAGIMAAKRTSELIPLCHVLLLEAVTVAFDLQDSAVEITASVR
                     TKGRTGVEMEALTAVSVAALTIYDMLKAVDRGMRIEAVRLVQKSGGASGDFVQP"
     gene            1805..>2217
                     /locus_tag="VEQ16_11410"
     CDS             1805..>2217
                     /locus_tag="VEQ16_11410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdenumtransferase MoeA"
                     /protein_id="HYP64493.1"
                     /translation="MISVDEARGRILAALPPVGLEIVALALAHGRVLGRDVQARVAHP
                     PADVSAMDGYALRAVDAGTGARLCVIGEAPAGHPFAGRVGPGEAVRLFTGSFVPEGAD
                     TVLIQENAVAGQDGITVTEGAEAGRHIRKQGQDFAT"
BASE COUNT          367 a          556 c          873 g          421 t
ORIGIN      
        1 cgcgcaggtg cgggtggagc tgggcacgcg cacgattttc aatctcaccg ggccgatggc
       61 caatccagca ttcgtcaagc ggcaattgat gggtgtgtat gaccctgtct ggttgcggcc
      121 cgtggcggag accctggcca agctaggcgc ggagagcgcc tgggtggtgc atggcggcgg
      181 gctggatgag ctggttctgg acggagagaa tcacgtggct tccttgcgcc agggcgagat
      241 cagggagttc acgctgtgcg cggtggatgc cggtctgccg actgtgccgc tagcggccct
      301 gcagggcggc gacgcagcgg agaatgccgc ggccttgctg gatgttttgc agggcgcgcg
      361 caatggttat cgtgatacga tattgttcaa tgccgcggcg gcgctgatgg tggcgggtgc
      421 ggtaggtgat ttacgtgagg gggttgcgcg cgcggcgcag gcgctggata gcggcgccgc
      481 attgcgcgtg ctggaaacgc tgcgggcggc ctcgcaggag gtgagtctgg catgaataag
      541 atggtggttg aggatgttct cgccagaatc tgcaccgata agcgggcgga ggtggcggag
      601 cgcaaggcgt cgctgccgct cgatgaactg aaggcggcgg cacgcgatgc ggacaagccg
      661 cgtggctttg gccgcgcgct catggatgcg tcggcggcgg gacggccagc gctgataacc
      721 gagatcaaaa aagcctcgcc ttcgggcggg ttgatccggg aggatttcgc gccggcggtg
      781 ctggcgcaat cctatgaaga gggcggggcg gcctgccttt ccgtgctgac ggaccagaaa
      841 tattttcatg gatcggcgga ggattttcag gtggcgcgtg ctgccgtgcg gctgccggtg
      901 ctgcgcaagg atttcatgct cgagccatgg cagatttatg agagccgagt gctgggagcg
      961 gattgcatcc ttctcatcat ggcggcgctc gaagaccagg aggcgcgcga tctggaagcc
     1021 ctggcccggg cgctggacat ggacgtgctg gtcgaggtgc ataatgagga tgagctggag
     1081 cgcgccctgg ggctgcaaac gccattgctc ggcattaata accgcaatct gaaaaccatg
     1141 gtgacctcgt tggagacgac ggaaatgctc tcctgccttt gtccgccgga ccggtttctg
     1201 gtttcggaat ccggcatcaa gacgaatgag gatgtgaagc ggctgcagaa ggtgtgcgtg
     1261 cagggcttcc tcgtcggcga atcgttgatg cgcgagccgg atgtgaaggc ggcggtgggc
     1321 cgcctgctgg ggacaggttg agccggctca cccatatcag tgaggatggc gcggcgcgga
     1381 tggttgacgt gtccgccaag gcggagacgt tgcgcgaggc cacggccaag ggacaggtgg
     1441 cgatgctccc tgagacgctg gcgctgatca aggatgggac tgcgaaaaag ggcgatgtgc
     1501 tggcggtggc acgggttgct gggatcatgg cggccaagcg gacatcggag ctgatcccct
     1561 tgtgccatgt gctgctgctt gaagcggtga cggtggcgtt tgatttgcag gattcggcgg
     1621 tggagattac cgcttcagta cgtactaagg ggcgcacggg cgtggagatg gaggcgctga
     1681 ccgccgtgag cgttgcggcg ttgacgatct acgacatgct aaaggccgtt gaccgcggga
     1741 tgcgcatcga ggcggtgcgc ctggtgcaga aatccggcgg cgcctcgggc gatttcgtgc
     1801 agccatgatc agcgttgatg aggcgcgggg ccggattctt gcggcgctgc cgcccgtggg
     1861 gctggaaatt gtggccctgg cgctggcgca tgggcgcgtg ctggggcggg atgtgcaggc
     1921 gcgggtggcg catccgccgg cggatgtctc ggcgatggat ggttatgcgc tgcgcgcggt
     1981 agatgcgggg acgggtgcca ggttgtgcgt gattggcgag gcaccggcgg ggcatccttt
     2041 cgcgggacgc gtcgggccgg gcgaagcggt gcggctattt acgggcagct ttgtgcccga
     2101 gggcgccgat acggttctga ttcaggaaaa tgctgtggcg gggcaggacg gaatcaccgt
     2161 tacggaggga gctgaggctg ggcggcatat acgtaaacag gggcaggatt ttgccac
//
LOCUS       DASQCV010000726         3941 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_153700, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000726 DASQCV010000000
VERSION     DASQCV010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3941
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_153700"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1120)
                     /locus_tag="VEQ16_11415"
     CDS             complement(<1..1120)
                     /locus_tag="VEQ16_11415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64494.1"
                     /translation="MLLRRPDAVLHPQFWAEDGQVFYHDAYSLGWHSLLLPLGGYLNS
                     LCRVTALLTVAFPLSWGPWIFMVVAAVFQLLPVWLMLSPRMAVAIPSCNARLALVYFY
                     ALLPNSYEMNLILTNAKWHLALVAFMLLICRPAKGWGGRVLDGTLLALSGLDGPFSIL
                     LLPVAWLEVARRKQVTGNALILSAAAAVQLWLIMTSHASSHRLLTPLGASLPGLFHIL
                     TNQLFLGGLVGSRQMTAWMASPAISSDSFAGAVVLVGVSMVGVALWRGPAIYRYAALF
                     AGAMLFTALLTPVASALEPQWSALAKPPLGMRYFAVPTLLWFATGLVFLGLPGRLARV
                     PGMVIMLAAALGAGSNLRYPSFAADGFAARATAFQAAVP"
     gene            complement(1197..1973)
                     /locus_tag="VEQ16_11420"
     CDS             complement(1197..1973)
                     /locus_tag="VEQ16_11420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007004763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HYP64495.1"
                     /translation="MQNWVEGAHAALEASGAAIRPYFRAGLAADDKSDESPVTVADRK
                     AEEILRARLLEAFPDCGIIGEEFPPHRPDQKYVWVIDPIDGTRAFITGRTTFCTLLGL
                     LEDGVPVLGFIDQPITRERWWGGRGVPAAFTGPFGGRVGTRQDVTLADAEFSSTAPEM
                     FTPEQMARLDRLKGAAKRVYWGGDAYAYGLLALGQIDVVAECSLKPWDWAALGPVIEA
                     AGGVVSDWAGRPLRLGVTEGDVVAAANAGLHGKALAALYP"
     gene            complement(1973..2965)
                     /locus_tag="VEQ16_11425"
     CDS             complement(1973..2965)
                     /locus_tag="VEQ16_11425"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c family protein"
                     /protein_id="HYP64496.1"
                     /translation="MSNSDKDGLLVNKIAAGVLTAGLVFWAANRLAEIFVSSEAPKAP
                     VITLAALPSAAPVAAVAGGGLESIIPLLAGADVAKGQAFVEQQCASCHTVTKGGADGV
                     GPNLFGVVGGPMFAHPGFNYSDAAKGKAKGNWNYDNMNEWLADPAHFVPDTAMSYAGI
                     HNTQTRADVVAYLRTLADSPLPLPTPEEVKAATAAAAPQAAASAAPAAPAAPSIDTLF
                     ASADAAKGQSVFQEQCSACHTITKGGADGVGPNLFGIVGRKAFSAPGFAYSDAVKAKA
                     GQPWTGDSLSAWLQDPAAYAPGTRMSYGGLHNDQTRADLIVYLNKNSDAPAKLP"
     gene            3058..3795
                     /locus_tag="VEQ16_11430"
     CDS             3058..3795
                     /locus_tag="VEQ16_11430"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019084895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HYP64497.1"
                     /translation="MKPIILIPARLGSTRLPGKVLADIAGLPMIAHVLKRGQEAQLGP
                     VAVACGEAEVAEAVEKHGGIAVLTDPALPSGSDRIHAALNELDPTGRHDVIINLQGDL
                     PAISPSYLARVLRPLEQGYDIGTLVAPITSAEEAASPSVVKCVCAFAEGAQVAPALYF
                     SRNPVPSGEGPLWHHIGIYAYRREALGHFVELPPSALEQREKLEQLRALEAGMRIGAV
                     RVEEAPFGVDTPADLEHARQLLGAAKI"
     gene            3792..>3941
                     /locus_tag="VEQ16_11435"
     CDS             3792..>3941
                     /locus_tag="VEQ16_11435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014239405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase domain-containing
                     protein"
                     /protein_id="HYP64498.1"
                     /translation="MIIAFQGQAGAYSDLACRKAFPDAQTLPCETFEDAMAAVHDGQA
                     GLAMLP"
BASE COUNT          733 a         1369 c         1201 g          638 t
ORIGIN      
        1 ccggtacagc cgcctgaaac gccgtcgcgc gcgccgcgaa cccgtccgcg gcaaatgacg
       61 ggtagcgcaa attacttccc gccccgagtg ccgccgccag catgatcacc atgcccggca
      121 cgcgggccag ccgtcccggc agcccgagaa acacgagccc ggtggcaaac cacagcaatg
      181 tgggtactgc aaaatatcgc atgcccagag gcggtttggc caacgcgctc cattgcggct
      241 ccaatgcgga ggcgaccggc gtcagcaggg ccgtgaataa cattgcgccc gcgaatagcg
      301 ccgcataccg ataaatcgcc ggtccgcgcc agagcgctac cccgaccatc gatacgccca
      361 cgagcacgac cgctccggca aacgagtctg agctgatcgc cggcgaagcc atccaggccg
      421 tcatctgacg gctccccacc agcccgccca gaaacagctg gttggtaaga atgtgaaata
      481 atcccggtag actggcgccg agtggtgtga gcagtcggtg agacgaggcg tgggaggtca
      541 tgatcaacca caactgcacc gcagccgcgg ctgacaggat gagcgcgttg ccggtaacct
      601 gtttccgccg cgcaacctcc agccatgcca ccggcagaag caaaatcgaa aacggtccgt
      661 ccagccctga gagcgccagc aacgtcccat ccagcacacg gcctccccaa cccttcgccg
      721 gccggcagat gagcaacatg aaagccacca aggcgagatg ccatttcgca ttggtgagaa
      781 tcagattcat ttcataggaa ttgggcagta gcgcataaaa atacacgagc gccaagcgcg
      841 cattgcaact cggtattgcc actgccatgc ggggagacag catcagccag accggcaaaa
      901 gctgaaacac cgccgccacc accatgaata tccacggccc ccagctaagc ggaaacgcta
      961 cagtcagcag cgccgttacc cggcaaagcg agttgagata gccgcccaat ggcagaagaa
     1021 gactatgcca gcccaggcta taggcgtcgt gatagaacac ctgcccatcc tcggcccaaa
     1081 attgcgggtg cagcaccgca tcgggccggc gcagcagcat cagcagcgcg acgaggacca
     1141 gatgcggcca aatgcccagc ctcgatagtt tcagcttttt cccccgcctt tacacctcat
     1201 ggatacagtg ccgccaacgc cttcccatgc agccctgcat ttgccgcagc caccacatca
     1261 ccctcagtca cacccaaccg caacggcctt cctgcccaat cgctcacaac cccgccagcc
     1321 gcctcaatca ccggtcccag cgcggcccag tcccagggct tcaggctgca ttccgccacc
     1381 acatcgatct gccccagcgc cagcagcccg tacgcatagg catcgccgcc ccagtacacg
     1441 cgcttggcgg cacccttcag ccggtccagc cgggccatct gttcgggcgt aaacatctct
     1501 ggcgcggtgg aggaaaattc cgcgtcggcc agagtcacat cctgcctggt gccgacgcgc
     1561 ccgccgaacg ggccggtgaa ggcggccggc acgccgcgcc cgccccacca gcgctcgcgc
     1621 gtgataggct ggtcgatgaa gcccagcacc ggcacgccat cctccagcag ccccagtagg
     1681 gtgcagaagg tcgtgcggcc ggtgatgaag gcgcgcgtgc cgtcgatcgg gtcgatcacc
     1741 cacacatatt tttggtcagg ccggtgcggg ggaaattcct cgccaatgat gccgcaatcg
     1801 gggaaggctt ccagcagcct ggcgcgcagg atttcctccg ccttgcggtc cgccaccgtc
     1861 accgggcttt cgtcggattt gtcgtcggcc gccagacctg cgcggaaata gggccgtatc
     1921 gcggcgccgc tggcttccag cgccgcatgc gccccctcaa cccagttttg catcagggca
     1981 gcttggcggg cgcgtcggaa ttcttgttca gatagacaat caaatcggcc ctcgtctggt
     2041 cgttatgcag cccaccatag ctcatgcgcg tgccgggggc ataggcggct gggtcttgca
     2101 gccatgcgct caacgaatcc ccggtccagg gctggccggc cttggccttc accgcgtccg
     2161 aataggcaaa gccgggggcg gaaaacgcct tgcgcccgac gatcccgaac aggttaggcc
     2221 ccaccccgtc cgcgccgccc ttggtgatgg tgtggcaggc cgagcattgc tcctggaaca
     2281 cgctctgccc cttggccgca tcggcgctgg caaacagcgt gtcgatgctg ggcgcggcgg
     2341 gcgccgccgg ggccgcgctg gcggctgcct ggggcgccgc ggcggcagtt gcggccttca
     2401 cctcttccgg cgtgggcaag ggcagggggc tgtccgcgag ggtgcgcaga taggccacca
     2461 cgtccgcgcg cgtctgcgtg ttatggatgc cggcatagga catggcggtg tccggaacga
     2521 agtgggcggg gtcggccagc cattcgttca tattgtcgta attccagttg cccttggcct
     2581 tgcccttggc ggcgtcggaa taattgaagc cgggatgcgc gaacatcggc ccgccgacca
     2641 ccccgaacag attcggcccg accccgtccg ccccgccttt ggtgaccgtg tggcaggagg
     2701 cgcattgctg ctcgacaaaa gcctgtccct tggccacgtc ggcgcccgcc agcagcggaa
     2761 tgatggattc gagcccgccg cccgccacgg ccgccacggg cgcggcgctg ggaagcgccg
     2821 ccagcgtgat cacgggcgct ttcggcgctt cgctggaaac aaaaatctcg gccaggcggt
     2881 ttgccgccca gaatacgagc cccgcggtga gtacaccagc ggcgatcttg ttaacgagca
     2941 gaccgtcctt gtctgaattg ctcatccttc tccccgaagc tcttatgtgg cctagattgc
     3001 tttcgaccct atagcgattt aggcagacgc gacaagcagt acagagatct ttgccccttg
     3061 aagccgatta ttcttatccc cgcccgtcta gggtccaccc gtctgcccgg caaggtgctg
     3121 gccgatatcg ccggcctgcc gatgatcgcg catgtgttga aacgcggcca ggaggcgcag
     3181 ctcggccccg tcgccgtggc ctgcggcgag gcggaagtgg cggaagcggt tgaaaaacat
     3241 ggcggaatcg ccgtgctgac ggatccagcc ctgccctctg gctcggaccg catccatgcc
     3301 gcgctcaacg agctggaccc gaccgggcgg catgatgtga tcatcaatct ccagggtgac
     3361 ctgcccgcca tcagcccgtc ctacctcgcc cgcgtgctgc ggccgctgga gcagggctat
     3421 gatatcggca cgctggtcgc gcccatcacc agcgcggagg aggcggcaag cccctctgtg
     3481 gtgaaatgcg tctgcgcctt cgccgagggc gcgcaggtgg ccccggcgtt gtatttttcg
     3541 cgcaacccgg tgccctcggg cgaggggccg ctctggcacc atatcggcat ctatgcctac
     3601 cggcgcgagg cgcttggcca tttcgtcgag ctgccgccct ccgccctgga gcagcgcgag
     3661 aaattggagc agctgcgcgc gctggaggct ggcatgcgca tcggcgccgt gcgcgtggaa
     3721 gaagccccct tcggcgtgga cacgcctgcc gacctcgaac atgcccgcca gcttcttgga
     3781 gccgcaaaaa tatgatcatc gccttccagg gccaggccgg cgcctattcc gacctcgcct
     3841 gccgcaaagc ctttcccgat gcgcagaccc tgccctgcga gaccttcgag gacgccatgg
     3901 cggcggtgca tgacggccag gctggcctcg ccatgctgcc g
//
LOCUS       DASQCV010000727         2754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3302088, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000727 DASQCV010000000
VERSION     DASQCV010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2754
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3302088"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..420
                     /locus_tag="VEQ16_11440"
     CDS             100..420
                     /locus_tag="VEQ16_11440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HYP64499.1"
                     /translation="MIDLTDSAVNAVRTAMAGASGPVGGLRIMVETGGCAGYKYSMGL
                     VPDGNDDDEIVERDGIKLFVDPKSHNLLNGTTIDFVVALQGSGFTFNNPNANNSCSCG
                     KSFG"
     gene            430..723
                     /locus_tag="VEQ16_11445"
     CDS             430..723
                     /locus_tag="VEQ16_11445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HYP64500.1"
                     /translation="MFVEHENQFATAPAQEDHRRQLIEAAIEEIRPNLRRDGGDCVLL
                     GIEGRNVMVRLTGACMFCKLSGATLEGIQSRIVEKLGEFVRLVPVPGGVKAAH"
     gene            745..1917
                     /gene="nifS"
                     /locus_tag="VEQ16_11450"
     CDS             745..1917
                     /gene="nifS"
                     /locus_tag="VEQ16_11450"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase NifS"
                     /protein_id="HYP64501.1"
                     /translation="MQVYLDNNATTRTSAEAVAAMLPYFTEHFGNAASSHGFGAAVSP
                     ALRAARRQVQSLLGAAFEQEIMFCSGGTEANNSAIHAALAAQPGRDEIITSAVEHPAI
                     MRPLAWAQKTRGITVRYVPVDAQGRLDMAAYRAALGARTALVSFMWANNETGTIFPVS
                     ELAAMAHAAGALFHTDAVQAAGKIRLDVKDTHIDLLSISAHKLHGPKGIGALYIRKGT
                     KFQPLLLGGGQERGRRAGTENVPAIVGFGAAAAQVETGAWSRMAMLRDVFESRCRAAI
                     PATRVNGDIASRLPNTSNISFEDADGEAILHHLAAAGIAASLGSACSSGSMEPSHVLL
                     AMGVPLNALHGALRFSLSRETAAVEIDHLLALLPGIVARVRAQSPLWAERQSLNFA"
     gene            1929..>2754
                     /locus_tag="VEQ16_11455"
     CDS             1929..>2754
                     /locus_tag="VEQ16_11455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004274334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocitrate synthase"
                     /protein_id="HYP64502.1"
                     /translation="MPHYPIPVIFNDTTLRDGEQAPGIAFTLAEKLGIARALDEAGVD
                     EIEAGIPAMGESEVEAIMAVREIVRSASVIAWCRMSAADVQAARRTGVGRVNLSLPVS
                     DRQIRAKFGTGRADALSRLTRVVALARDAGLAVAVGCEDASRADMDFLLQVQEAAEAA
                     GAGRLRYADTLGVLDPFQTYELFQTLWANTDMELEFHGHDDLGLATANTLAALRGGAT
                     HASVCVLGLGERAGNAALEEVAAALAPVLGLGSNIDLTRLPALAATVARAAQRPIDA"
BASE COUNT          477 a          904 c          901 g          472 t
ORIGIN      
        1 ttgtcgtttt ccgatggcac ggcggttgca ttcaaccccg tgaaaccttg cctattgaaa
       61 ccacgtggct gacagctgcg ccagcgaatg gagtgaacca tgatcgactt gacggacagc
      121 gccgtgaatg cggtacggac ggcgatggcg ggagccagcg gcccggtcgg aggattgcgc
      181 atcatggtgg agaccggcgg ctgtgctggc tataaatatt ccatggggct ggtgcccgat
      241 ggcaatgacg atgatgagat cgtcgaacgc gatgggatca aactcttcgt cgatccaaag
      301 agccataatc tgctcaacgg caccacgatc gatttcgttg tggcgttgca aggctctggc
      361 ttcaccttca acaatcccaa cgccaacaac agctgctcct gcggcaaatc cttcggctag
      421 gaggaaacca tgtttgtcga gcatgagaat cagttcgcga cggcaccggc gcaggaggat
      481 catcgccgcc agctcattga ggctgcgatc gaggagatca ggcccaacct gcggcgcgat
      541 ggcggcgatt gcgtgctgct tggcatagag gggcgcaatg tgatggtgcg cctcaccggg
      601 gcctgcatgt tctgcaaact ctcgggcgcg acgctggagg gaatccagag ccgcatcgtc
      661 gaaaagcttg gcgagttcgt ccgcctcgtg ccggtgccgg gaggcgtcaa ggccgcgcat
      721 taaccgcccc ctcggagtgg cagcatgcaa gtctatctcg acaataacgc caccacccgc
      781 acctcggccg aggcggtcgc tgccatgctg ccctatttca ccgaacattt cggtaatgcc
      841 gcctccagcc acggcttcgg cgcggcggtg agccccgcgc tgcgcgccgc gcgccggcag
      901 gtccagtcct tgctgggcgc tgccttcgag caggagatca tgttctgctc gggcggaacg
      961 gaggcgaaca acagcgccat tcacgcggcg ctcgcagcgc agcccgggcg cgatgaaatc
     1021 atcaccagcg cggtggagca ccccgcgatc atgcgtccgc tggcctgggc gcaaaaaaca
     1081 cgcggcatca ccgtgcgcta tgttccggtg gacgctcaag ggcggctcga catggcggcc
     1141 tatcgcgccg cactaggggc ccgcaccgcg cttgtcagct tcatgtgggc aaataacgaa
     1201 accggcacga tatttcccgt gtccgagctt gccgccatgg cccacgcagc cggcgcgttg
     1261 ttccatacag atgccgtgca ggccgccggc aaaatccggc tcgacgtcaa ggacacacat
     1321 attgacctgc tctccatctc cgcgcacaag ctgcacggcc cgaaaggcat cggtgcgctc
     1381 tacatccgca aagggacaaa attccagcca ctgctgctgg gcggcgggca ggagcgcggc
     1441 cgccgcgccg gcacggaaaa tgtgccggcc atcgtcggtt tcggcgcggc cgcggcgcag
     1501 gtagaaaccg gcgcctggtc gcgcatggcg atgctgcggg atgttttcga atcccggtgc
     1561 cgcgccgcca tccctgctac ccgcgtcaat ggcgatatcg ccagccggct gcccaatacg
     1621 agcaacatct cgttcgagga cgcggacggt gaggccatct tacaccacct cgccgcggcc
     1681 ggcatcgccg cctcacttgg ctcagcctgc agttccggca gcatggagcc ctcgcacgtg
     1741 ctgctcgcca tgggtgtgcc gctcaacgcc ttgcatggcg ccctgcgctt ctcgctgtcg
     1801 cgcgaaacgg ccgcggtgga gatcgaccat ctgctggcac tcctgcccgg catcgtcgcg
     1861 cgggtgcggg cgcaatcacc gctctgggct gagcgccaga gcctgaattt cgcatgagga
     1921 gccttgtcat gccgcattac cccatccccg tcatcttcaa cgatacaacc ttgcgcgatg
     1981 gcgaacaggc gccgggcatc gccttcaccc tggcggaaaa gctcggcata gcccgtgcgc
     2041 tggacgaggc cggggtagat gagatcgagg ccgggatccc ggccatgggc gagagcgagg
     2101 tcgaggcgat catggctgtg cgcgagattg tgcgctcggc cagcgtgatc gcctggtgcc
     2161 gcatgagcgc agccgatgtg caggcggcgc gccgcaccgg ggttggtcgc gtcaacctct
     2221 ccctgccggt gtcggaccgc cagatccgcg ccaaatttgg caccggccgg gccgatgcgc
     2281 tgtcccggct gacccgcgtg gtggcattgg cccgcgatgc cgggctcgcc gttgcggtcg
     2341 gctgcgagga tgcgagccgg gccgatatgg atttcctgct gcaggtgcag gaagcggccg
     2401 aggcggccgg ggccggccgg ctacgctatg cagacacgct cggcgtgctc gacccgttcc
     2461 agacctatga gctgttccag acattatggg ccaataccga catggagctg gaattccacg
     2521 gccatgacga tctcggcctc gccaccgcca acacactcgc cgccctgcgc ggcggcgcca
     2581 cccatgccag tgtgtgcgtg ctgggcttgg gtgagcgcgc cggcaatgcc gcgctcgaag
     2641 aggtggctgc ggcgctagcg ccggtgctgg ggctcggctc gaatatcgac ctcactcgtc
     2701 ttcccgcgct ggcggcgacg gtggcgcggg ccgcgcaacg gcccatcgat gccg
//
LOCUS       DASQCV010000728         3585 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1150143, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000728 DASQCV010000000
VERSION     DASQCV010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3585
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1150143"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..554
                     /locus_tag="VEQ16_11460"
     CDS             <1..554
                     /locus_tag="VEQ16_11460"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004273393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HYP64503.1"
                     /translation="GGDQGQTSLGNGERVPKSSLRIAALGEVDEANAAIGMARLNCAG
                     PEDELLARLQNDLFDLGADLCMPIEEGKPALRINQAQIDWLEGQIDAATSELTPLNSF
                     ILPAGVPGAATLHLARAVVRRAERAVVHLTEAPDQKVNRLVLIYLNRLSDLLFVLARL
                     ANAGGQLDVLWVPQGQADQGRNG"
     gene            547..2238
                     /locus_tag="VEQ16_11465"
     CDS             547..2238
                     /locus_tag="VEQ16_11465"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase"
                     /protein_id="HYP64504.1"
                     /translation="MADGQAACGTGWRITPGFAAQGQAGQCGSFYALYDGTDFGAPGR
                     GLAAIIAQAHPEAGQLESAVRDAAQIAVHEFAEGYFGAQRTLSPRRAAAVALSSLNRW
                     LAGQMQGDAARHPPPVSLSALLFQHRRVAIVQIGVCQLFRQRGTGITPLIRPHLRLGA
                     GNRPARALGLEDDLAVGFEEDEAEPGDIFLLLAGAGMPELVYAALTPLADLPDAGVEA
                     LAARALAMLPGPGKSVMALRVDALPASDESDASAQLGELPIRPPPKEGDVWDGFAIGK
                     TLFHGRYTILKSAIDKNSGKEVALKIPLKSMLQDEVFAAGFMREAWIGATVRSACVAR
                     YIDVPLARRTSLYLAMQLYRGRTLEARLNHAPTVSLPEGVGIALKLCEAIQDLAAIQV
                     IHRDIKPDNVMLLDQRGGVVLLDLGLAYLPGIDAADATKPGGTIRYMAPELLRGSPAS
                     SRTEVYALGVTLYRMFSGGPYPFGQNEKLPLAKMRPDLPRWLGEIFARALAAKPEERF
                     ADAGELARALQAGLAEGQEAPLRARPKLITKLRLWQAATILFAGLSLVLAAKLIK"
     gene            2253..3095
                     /locus_tag="VEQ16_11470"
     CDS             2253..3095
                     /locus_tag="VEQ16_11470"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HYP64505.1"
                     /translation="MSDLHLEMERWRLSIPGWQDFRARHRDARGKHPLRGPLLSDIGD
                     IDLVLLAGDIHVGLRGIIYAEQLAAYFDAPVVYVAGNHEYYQQHIDLLLPALRSAAEH
                     SGGRVQFLDNDVASFNFGDQRVHVLGCTLWTDFALHGDVSAAMAFAAKHMNDYRLIRR
                     VTSFFRPENALARHERSRLWLRHNVARLRLEEPGAKIIALTHHAPHEAVLGRRNGRIA
                     PCYVSNLLPEYFAAPPDLWVHGHTHYRHDSVLEGVRVVSAPRGYIAHEGAAALAFQPG
                     ILEL"
     gene            3178..>3585
                     /locus_tag="VEQ16_11475"
     CDS             3178..>3585
                     /locus_tag="VEQ16_11475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HYP64506.1"
                     /translation="MRYSVFSVVTEALRGHTGWKPAWRKAAPAPHYDVVIIGGGGGGL
                     STAYHLARHHQVGRIAVLEKGWLGNGSIGRNTTIIRSNYLLPGNVPFYELSMKLWEGL
                     EQEINYNAMVSQRGIFNIYHNDTQRDSYARRGNS"
BASE COUNT          569 a         1066 c         1217 g          733 t
ORIGIN      
        1 gtggcggtga tcaagggcag acctcgctcg gcaatggcga gcgtgtgccc aaatcctcgc
       61 tgcgcatcgc tgctttgggc gaggtggacg aggccaacgc tgctatcggc atggcccggc
      121 tgaattgcgc ggggccggag gatgagctac tggcgcggct gcagaatgat ctgttcgatc
      181 tgggtgcgga tctctgcatg ccgatcgaag agggcaagcc agccttgcgc atcaaccagg
      241 cgcagatcga ctggctggaa gggcagattg acgcggcgac ttcggagctg acgccgctga
      301 attccttcat tttgccggct ggcgtgccgg gggcggcaac actgcatctg gcccgcgccg
      361 tggtgcgccg ggccgaacgc gctgtggtgc atcttaccga ggcgccggac cagaaggtga
      421 accggctggt gctgatctat ctcaaccggc tctcggacct gctgttcgtg cttgcccgtc
      481 tggccaatgc cggcgggcag ctcgatgtgc tgtgggtgcc ccaaggacaa gccgatcaag
      541 gccggaatgg ctgacggaca ggcggcttgc ggcacgggct ggcggattac tccgggcttt
      601 gccgcgcagg ggcaggctgg tcagtgcggc tcattctacg cgctttatga cggcacggat
      661 ttcggtgcgc cagggcgggg ccttgccgcc atcatcgccc aggcccatcc cgaggccggc
      721 cagctcgaga gcgcggtgcg ggatgccgcc cagattgccg tgcatgaatt tgccgagggc
      781 tatttcggcg cgcagcgcac cctctcgccg cgccgtgccg cggcagtggc tttatcctcg
      841 ctgaatcgct ggctggccgg gcagatgcag ggtgatgcgg cgcgtcatcc accgcctgtc
      901 tcgctttcgg ccttgctgtt tcagcaccgg cgcgttgcca tcgtgcagat tggcgtttgt
      961 cagcttttcc gccagcgcgg cacggggatt acgccgctta tccgtccgca tctgcgactg
     1021 ggtgcgggca accgcccggc ccgcgctctg gggttggagg atgacctcgc ggtcgggttt
     1081 gaggaggatg aggccgagcc gggcgatatt tttctcctcc tggccggggc ggggatgccg
     1141 gaactggttt atgcggcgtt gaccccgctg gcggacttgc ccgatgccgg ggtggaggcg
     1201 cttgctgccc gcgccttggc catgctgccc ggccccggca aatccgtgat ggcgctgcgg
     1261 gtggatgcgc tgcccgcttc cgatgagagc gatgcgagcg cgcagcttgg cgaactgccg
     1321 atccgcccgc cgcccaagga aggcgacgtg tgggatggtt tcgccatcgg gaagaccttg
     1381 ttccatggcc gctacaccat cctcaaatcc gccatcgaca aaaacagcgg caaagaggtg
     1441 gcgctgaaaa ttccgctaaa atccatgctg caggacgaag tgttcgcggc cggtttcatg
     1501 cgcgaggcct ggattggcgc taccgtgcgc agcgcctgcg tggcgcgtta tatcgatgtg
     1561 ccgctggcgc gccgcaccag cctttatctt gccatgcagc tttatcgcgg ccgcacgctg
     1621 gaggcgaggc tcaaccatgc gccgactgtg agccttccag aaggggtagg aatcgccttg
     1681 aaactttgcg aggcgatcca ggatttggcc gccatccagg tgatccatcg cgatatcaag
     1741 ccggacaatg tcatgctgct ggaccagcgc ggcggggtgg tgctgctcga tttgggcctc
     1801 gcttatctgc cgggcatcga tgccgcggac gcgaccaagc ccggcggcac catccgctat
     1861 atggcgccgg agctgctgcg cggcagcccg gcttcgagcc gcaccgaggt ttatgcgctg
     1921 ggcgtgacct tgtaccgcat gttttccggt ggtccgtatc cgtttgggca gaatgagaag
     1981 ctgcctctgg cgaagatgcg gcctgatctg ccgcgctggc tgggtgaaat atttgccagg
     2041 gcgctggccg cgaagcccga ggagcgtttt gccgatgccg gcgagcttgc ccgcgctttg
     2101 caggcggggc tggcggaagg gcaggaggcg cctctgcgcg cgcgcccgaa gctgattacc
     2161 aaattgcgtc tgtggcaggc agccactatc ttgtttgcgg ggctgagcct cgtgctggcg
     2221 gccaagctga taaaatgact cgcattctct atatgagcga tttgcacctg gagatggagc
     2281 gctggcgcct ttccattccg ggctggcagg atttccgggc gcgccaccgc gatgcgcgcg
     2341 ggaaacatcc gctgcgcgga ccgcttctct cggacatcgg cgatatcgac ctcgtgctgc
     2401 tcgccgggga tattcatgtc ggcctgcgcg gcatcatcta tgccgagcag ctggcggctt
     2461 atttcgatgc gccggtggtc tatgtggcgg gcaatcacga atattaccag cagcatatcg
     2521 atctgcttct gcccgctctg cgctccgccg ccgagcatag cggcgggcgc gtgcagtttc
     2581 ttgataatga tgtcgcctcc ttcaattttg gcgatcagcg cgtgcatgtg ctgggttgca
     2641 ctctatggac cgatttcgcg ctgcacggcg atgtgtccgc ggcgatggcg ttcgcggcaa
     2701 agcacatgaa tgattaccgg ctgatccgcc gtgtcacctc cttcttccgc ccggaaaacg
     2761 cgctggcgcg ccatgagcgc tcgcgcctgt ggctgcgcca taacgtggcc aggctgcggc
     2821 tggaggagcc gggcgcgaaa atcatcgcgc tgacccatca tgcgccgcat gaggcggtgc
     2881 tggggcggcg caatgggcgg atcgcgccgt gttacgtctc gaatctgcta cctgaatatt
     2941 ttgccgctcc gccggattta tgggtgcatg gccatacgca ttaccggcat gacagcgtgc
     3001 tggagggggt gcgcgtggtc tccgcgccgc gcggttatat tgcccatgag ggggcggcgg
     3061 ccctggcgtt tcagccaggt attttggagc tttaaccggc tgcccgcgca aagggtttga
     3121 caggataaaa attcttgtgc atcactctaa ttaactcaca ggaattttta catcccgatg
     3181 cgctactccg ttttttccgt ggtgacagag gctttgcgcg gccatacggg ctggaaaccg
     3241 gcctggcgca aggccgcgcc ggcgccgcat tatgatgtgg tgatcatcgg cggcggcggc
     3301 ggcgggctct ccacggcgta ccatctggcg cggcatcacc aggtggggcg cattgcggtg
     3361 ctggagaagg gctggctcgg gaatggctcg atcgggcgca ataccaccat catccgctcg
     3421 aattatctgc tgccggggaa tgtgccgttc tatgagctgt cgatgaagct ctgggagggg
     3481 ctggagcagg agatcaatta caacgcgatg gtctcgcagc gcgggatttt caatatctac
     3541 cataatgaca cgcagcgtga ttcctatgcg cggcgcggca attcg
//
LOCUS       DASQCV010000729         3095 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1314941, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000729 DASQCV010000000
VERSION     DASQCV010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3095
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1314941"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            164..919
                     /gene="moeB"
                     /locus_tag="VEQ16_11480"
     CDS             164..919
                     /gene="moeB"
                     /locus_tag="VEQ16_11480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HYP64507.1"
                     /translation="MEFNFSEDEIQRYARHILLRELGGTGQALIKEAKVLIVGAGGLG
                     SPLALYLAAAGVGTIGLVDEDVVELSNLQRQIAHGMSDIGRPKVSSAAESAARINPLV
                     RVVAHQERLAAANVAALVADYDIICDGTDNFATRFLLADACVAARKTLISAAVLRFEG
                     QLATFKPHEGGPCYRCLYPEPPPEGLVPACSEAGVLGAVTGVMGTLQATEVLKEITGV
                     GKSLAGYLLVWNALDAEFRKIRLKKDPQCPVCG"
     gene            967..1473
                     /locus_tag="VEQ16_11485"
     CDS             967..1473
                     /locus_tag="VEQ16_11485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HYP64508.1"
                     /translation="MPLLILPLLLGAAAPDPGQGPGPGIGAVTKLPVPRFVSLRSDQV
                     NFRAGPGFQYPVTWVYQRAGLPVEIIGEFDVWRQLLAPDGGTGWVHEATLRARRSFYI
                     TEPQAMLRGAPNPDASIAAYLNQGVSGELIRCDKGSDFCKVSIDHRTGYLARTDFWGV
                     FAGEAVSP"
     gene            1593..2039
                     /locus_tag="VEQ16_11490"
     CDS             1593..2039
                     /locus_tag="VEQ16_11490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003623715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GcrA family cell cycle regulator"
                     /protein_id="HYP64509.1"
                     /translation="MEWTDETIAKLRTLWAEGLSTAEIGRRLNISKNAVVGKAHRLNL
                     PSRPSPIRRAEGDATPRPAAPKRAQGPTLPPLAASMGAPVPTLRAIMPTPKYTMRATP
                     CCWPIGEPGKPSFHFCNASAVAGKPYCEEHAAIAYVRVRDRREDVA"
     gene            2294..2500
                     /locus_tag="VEQ16_11495"
     CDS             2294..2500
                     /locus_tag="VEQ16_11495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein"
                     /protein_id="HYP64510.1"
                     /translation="MLTGVVKWFNPGKGYGFIAPDEGGNDIFVHISAVQHAGLRKLNE
                     GERVRFALQQREGRVAAIGIERLH"
     gene            2753..>3095
                     /locus_tag="VEQ16_11500"
     CDS             2753..>3095
                     /locus_tag="VEQ16_11500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase family protein"
                     /protein_id="HYP64511.1"
                     /translation="MSEALAGLAATGGASLPLFGVRPAGLEALLARLPGAEAQAGLSG
                     FTAEAGQVLRLPEAALLGLGDGPALYGFGAAAAALPEGSVWHLTGDDFSYDDAALGFL
                     LGAYRYDRFKPR"
BASE COUNT          565 a          961 c          979 g          590 t
ORIGIN      
        1 ggcgccaccc atgcggatgg cattgatcag cttcatctct gcaacctaca aaccgccagg
       61 aaacgccccg gcgcatatgg cgactctatt acaaactgac acaccgcgtg aagtgctctc
      121 agcgcgtttg gccccgcgcc agacgcatat tataagtgag gcgatggaat ttaatttttc
      181 tgaagacgag atccagcgtt acgcccggca catactgctc cgcgagctgg ggggcaccgg
      241 ccaagccctt ataaaagaag caaaagtgct gatcgtaggg gctggcgggc tgggctcgcc
      301 gttggcgctg tatctggccg ccgccggggt gggcaccatc gggttggtgg atgaggatgt
      361 ggtcgagctc tccaacctgc agcggcagat cgcccatggg atgagcgata tcggccggcc
      421 gaaggtcagc tccgccgccg aatcggccgc gcgcatcaac ccgctggtgc gggtggtggc
      481 gcatcaggag cggctggcgg ccgccaatgt cgctgctctg gtggcggatt acgacattat
      541 ctgcgacggc accgataatt tcgccacgcg cttcctgctc gccgatgcct gcgtggcggc
      601 gcgcaagacg ctgatcagcg ccgccgtgct gcgcttcgag ggacagctcg ccaccttcaa
      661 gccgcatgaa ggtggaccgt gctatcgctg cctctacccc gagccgccgc cggaagggct
      721 ggtgccggcc tgttccgaag ccggcgtgct cggcgcggtg acaggcgtga tgggcacact
      781 gcaggccacc gaggtgctga aggaaattac cggcgtcggc aaatcgcttg ccggctattt
      841 gctggtgtgg aatgccttgg acgcggaatt ccgcaagatt cgcctgaaga aggacccgca
      901 atgccccgtc tgcggctgac gaaaagtagc aacctttttt gtaaaaaagg tggcgccaaa
      961 aaacttttgc cacttttgat cctgccgttg ctcctgggcg cggcggcgcc cgatccgggg
     1021 caagggccgg ggccaggcat tggcgccgtg accaagctgc ctgtgccgcg cttcgtctcg
     1081 ctgcgctcgg accaggtgaa tttccgtgct gggcccggtt ttcaataccc agttacctgg
     1141 gtctatcagc gcgccggact gccggtggag atcatcggcg agttcgatgt ctggcgccag
     1201 cttctggcgc ccgatggcgg cacaggctgg gtgcacgagg cgacgctgcg ggcacggcgc
     1261 agcttctaca tcaccgagcc ccaggccatg ctgcgcggcg cacccaatcc agatgcctct
     1321 atcgccgcct atctcaacca gggcgtcagc ggcgagctga tccgctgcga caagggctcg
     1381 gatttctgca aggtcagcat tgaccaccgc accggctatc tggcccgcac cgacttctgg
     1441 ggtgtgttcg ctggcgaggc agtttccccc tgaaaaaatt atttcagacc cggttgtcca
     1501 cagaaaagga ctcggaagcg gcctgctaga ggttgctgca atcgccggac ttgcctactg
     1561 tatatggtag attgcacgag gggagccaca atatggagtg gacagacgag acaattgcca
     1621 aactccgtac gctctgggcc gaagggctgt ccacagccga aattggccgc cgcttgaata
     1681 tttccaaaaa tgcagtggtc ggcaaggccc accggctgaa cctgccatcc cgtccgtcgc
     1741 ccatccgccg cgccgagggc gatgccaccc cgcgccccgc cgcgcccaag cgcgcccagg
     1801 gcccgaccct gccgccgctc gccgcctcga tgggcgcgcc ggtgccgact ttgcgcgcca
     1861 tcatgcccac gccgaaatat acgatgcgcg ccacgccttg ctgctggccg atcggcgaac
     1921 ccggcaagcc aagcttccat ttctgcaacg cttccgccgt ggccggaaaa ccttattgcg
     1981 aggagcacgc tgccatcgcc tatgtgcgcg tgcgcgaccg ccgcgaagac gtcgcttaag
     2041 gcgcttttta ccagcaatac ttaaggactt gtcatcccgc ggtgaaactc accgtttgtc
     2101 agcttcactg cgggagcgta agcgttgcgc tgcagcacat attttccatt gatcaggcct
     2161 cgccttctgg cctagacttc gcctgccggg gaaataccgg tgataataag acccacgcct
     2221 ggcaacacca ggtcaagaat aaggtgcgaa gatggaaacg atgcaggaca ataaaactcg
     2281 ctccgagaac gccgtgctga ccggcgtggt gaaatggttc aatccaggaa aaggttacgg
     2341 ctttattgcg cccgatgaag gcggcaacga tatttttgtc catatcagtg ccgtgcagca
     2401 tgccggcctg cgcaagttga atgaggggga gcgcgtgcgc ttcgccctgc agcagcgcga
     2461 aggccgtgtc gccgccatcg ggatcgagcg gctccactaa gcctccttac cccggcgcac
     2521 ctccccgaca ggccgcgcct gacccgcaag ggtgacgccg ggaatggata tatgcatgaa
     2581 agcacgggat gatgcctcat ccgcatcatc ctccagggtc ggcggcgtgt gccgccggcc
     2641 cttttttcgc gttggccggg ttaaaaattt gttgaccggc cggttctgtg ctcgccggtc
     2701 ataccgatgt acttttcagg tggtaaaata atcggatggc gtggagtcgg gcatgagcga
     2761 ggcgttggcg gggctggcgg caacaggcgg ggcgagccta cctttgttcg gcgtgcgccc
     2821 cgcggggctg gaagcgctgc tggcgcgcct gcccggggca gaagcccagg ccgggctgtc
     2881 gggcttcaca gccgaggctg gacaggttct gcgcctgccg gaggccgccc tgctggggct
     2941 gggtgatggc cccgccctat acggatttgg tgccgccgct gccgcactgc ctgagggcag
     3001 tgtgtggcat ctgaccgggg atgatttcag ctatgatgat gccgcgcttg gatttttgct
     3061 cggcgcctac cgttatgacc gcttcaagcc gcgct
//
LOCUS       DASQCV010000730         2163 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_316252, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000730 DASQCV010000000
VERSION     DASQCV010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316252"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1154)
                     /locus_tag="VEQ16_11505"
     CDS             complement(<1..1154)
                     /locus_tag="VEQ16_11505"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493858.1"
                     /note="This protein belongs to a clade of FMN-dependent
                     monooxygenases, within a broader family of
                     flavin-dependent oxidoreductases, the luciferase-like
                     monooxygenase (LMM) family, some of whose members use
                     coenzyme F420 rather than FMN; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NtaA/DmoA family FMN-dependent monooxygenase"
                     /protein_id="HYP64512.1"
                     /translation="MSGKKFHLGWFMNFTPDEWREPFAQGGQPWNGQFYIEMAKALER
                     ACFDYIMIEDKLMVSETYGGSREAGLRTGMMAPKHDPVPLAVAMGMATKHLGVIATMS
                     TLGYPPFLLARLASTVDSLTEGRFGWNVVTSAENLAAQNFGLDALPPREKRYAMAEEY
                     MEVVGKLFESWDEDAVVLDRAAGIYADHTKVRPINHAGDFFKVRGPLNTVRSPQGRPV
                     YVQAGASPRGRDFAAKHADSIVSVASGVEDMKKFRDDIRARAKAAGRDPDAIKILFCV
                     TPTVADSEAEAQAKHTRMLTAPHFIDDMLASLSAITDIDFAQYELDEPLPGKLTTNGE
                     QGTLDKFQQYGSGKTLRQLVIDGAGGIVSSVELIGTPDSVAARMGEVMQEV"
     gene            1397..2056
                     /locus_tag="VEQ16_11510"
     CDS             1397..2056
                     /locus_tag="VEQ16_11510"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HYP64513.1"
                     /translation="MTGTKSRTEPTEQGTGRQVRKRLAPAARAGHILTTALELFAARH
                     FSAVSMRDIAEACDINAGLIYYYYENKNELLRRALGHAIAELQRGYDIGQRQKLNPAE
                     ELSAWLRMHVPIAPMLIRMVKIMADYAASGVRDEATDRLILDFYAREQNFLEDCLMRG
                     MAQKLFRPLDVARTARAFSLQLDGIFYASQARGDERVAEDIANLCEIAEGPALRLMTE
                     K"
BASE COUNT          418 a          649 c          654 g          442 t
ORIGIN      
        1 acttcctgca tcacttcgcc catgcgcgcg gcaacggagt ccggcgtgcc gatcagctcg
       61 accgaggaga cgatgccgcc cgcgccgtct atgacgagct ggcgcaaggt cttgccgctg
      121 ccatattgct ggaacttgtc cagcgtgccc tgctcgccat tggtggtgag cttgccgggc
      181 agaggctcgt ccagctcata ttgcgcgaaa tcgatgtcgg tgatggcgga aagggaggcg
      241 agcatgtcgt cgatgaaatg cggcgcggtg agcatgcgcg tatgcttcgc ctgcgcctct
      301 gcctcggagt ccgccacggt cggcgtgacg cagaacagga tttttatcgc gtcaggatcg
      361 cgccccgccg cttttgcccg ggcgcggata tcgtcgcgga attttttcat gtcctcgaca
      421 ccgcttgcca cggaaacgat ggaatccgca tgtttcgccg cgaagtcgcg cccgcggggc
      481 gaagcgccgg cctgcacata gaccggccgt ccctgcggcg agcggacggt attgagcggc
      541 ccgcgcacct tgaagaaatc gcccgcatgg ttgatgggcc gcaccttggt atggtcggca
      601 tagatgccgg cggcgcggtc cagcaccacc gcgtcctcat cccagctttc aaataatttg
      661 cccactacct ccatatattc ttccgccatg gcgtagcgtt tttcacgcgg cggcagcgcg
      721 tccaggccga aattctgcgc ggcgagattc tcggcgcttg tcaccacatt ccagccgaag
      781 cgcccttccg tcagactgtc caccgtggac gccaggcgcg ccagcaggaa gggcgggtag
      841 ccgagcgtgg acatggtggc gatgacgcca agatgtttag ttgccatgcc catcgccacg
      901 gcgagcggca ccgggtcgtg cttgggtgcc atcatgccgg tgcgtaagcc cgcctcgcgt
      961 gaaccgccat aggtttcgga gaccatcagc ttgtcctcga tcatgatgta gtcgaaacaa
     1021 gctcgctcga gcgctttcgc catttcgata tagaattgcc cattccaggg ctgcccgcct
     1081 tgggcgaagg gctcgcgcca ttcgtcaggc gtaaaattca tgaaccagcc aaggtgaaat
     1141 ttcttgccgg acatcgctta tcttccgatc ccgttagagc cgcgcacacc cctccgcccc
     1201 aatgcgggcc gatggtttcg gcggcggccg tgcgccgcct tgcgcgttat taaacgatag
     1261 ttcaattatg ccggtcaagc agaacatgga gaaaaataga gcggtttttc gtatatatgg
     1321 actcaatctc ggcatttgaa atttaaatag gcagcggact gcaaataata taagcaaccg
     1381 gaattggaga tactttatga cgggcacgaa gtcgcggaca gagcccacgg agcagggcac
     1441 gggccgccag gtgcgcaagc gcttggcgcc ggccgcgcgc gccgggcata tattgaccac
     1501 cgccctggag ctgttcgccg cgcgccactt cagcgccgtc tcgatgcgtg acatcgccga
     1561 ggcctgtgat atcaatgccg ggctgattta ttactattac gaaaataaga acgagttgct
     1621 acgccgcgcc cttggtcacg ccatcgccga gttgcagcgc ggttatgata tcggccagcg
     1681 tcagaagctg aatccggcgg aggagttgtc cgcctggctg cgtatgcatg tgcccatcgc
     1741 gccaatgctt atccgcatgg tgaagatcat ggccgattat gccgcgtctg gcgtcaggga
     1801 tgaggcgacg gataggttga tcctcgattt ctacgcacgc gaacagaatt tcctggagga
     1861 ttgcctcatg cgcggcatgg cgcagaaatt attccggccg ctcgacgtgg cacgcacagc
     1921 ccgcgccttc agcctgcagc tcgatggtat tttctacgcc tcgcaggcgc gcggggatga
     1981 gcgcgtggcg gaggacattg ccaatctgtg cgagattgcc gaaggcccgg cactgcgctt
     2041 gatgactgaa aagtaatttt gcccggcgca tgaccgcgcc catatgcccg aagggatgga
     2101 ttctgttaca tttgcgcgcc ggtcccgcgc gccgtcacga ccacacaggc tgaaatttaa
     2161 aaa
//
LOCUS       DASQCV010000731         2573 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2640908, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000731 DASQCV010000000
VERSION     DASQCV010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2640908"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1294)
                     /locus_tag="VEQ16_11515"
     CDS             complement(<1..1294)
                     /locus_tag="VEQ16_11515"
                     /inference="COORDINATES: protein motif:HMM:NF024846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding protein"
                     /protein_id="HYP64514.1"
                     /translation="MSPPPLRVAVIGGGFCGAFFAAQLAHHSAVPLSISVIEPREQLG
                     GGVAYSSVDPAHRINVPASRMTLFPDTPDHFDRWFREAGGLAEDNEALWSDGHIYPRR
                     AVFGRYIAELVAARQKSRIHAPITHVRGRAIAANRHEQGYKVQLEAGGTVEADVLVLA
                     TSHPPPEVPALLADALGDNPRMIANPWAPEALESIQADAPVAIIGTGLTMADVVASLD
                     RRGHEGPITAFSRRGQLSRGHALAPMAPFTWFDATDLPHSTLALLREARRQIASAAAQ
                     GNPWQGVFDNIRANGQRLWQGLDMAERRRFLRHLRVYWDAHRYRVAPQVEAVVRRKRQ
                     EGTLTVQAAARRAVKATGGKITLTLQPRHKPGLMQIAARHVVVTTGPDHGTALARNPV
                     LASLAAQGLIRADHLALGLAVDARAQAVQAGGSSSPTLL"
     gene            1927..2508
                     /locus_tag="VEQ16_11520"
     CDS             1927..2508
                     /locus_tag="VEQ16_11520"
                     /inference="COORDINATES: protein motif:HMM:NF015799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ANTAR domain-containing protein"
                     /protein_id="HYP64515.1"
                     /translation="MRILLADSNAVRREALAAQLAALDAGFLVILLAADEPLNAGVER
                     LRPDVVLVDMARPDRDGLDSLALPGSAMPVVMFLDDGDPGFMREAISAGLSSYHGQNV
                     APDAAKLVMRLALAFFQRTQAAAARLQEVEEQAAMRQAVDAAKRLLMREERMSEPAAH
                     KFLQRRAMDQQKRMADVAAEFLAARGRQGTINE"
BASE COUNT          486 a          767 c          825 g          495 t
ORIGIN      
        1 ccagcaaagt cgggctgctg ctaccgccgg cctgtacggc ctgcgctctg gcatccactg
       61 ctagccccag cgccaaatga tcggcgcgaa taagtccctg cgcagccaaa ctggccagca
      121 ctggattacg ggcaagggcc gtgccgtggt ccggcccggt cgtcactacc acatgccttg
      181 ccgcaatttg catcaggcct ggcttgtggc gcggttgcag tgtcagtgtt attttccccc
      241 ccgttgcctt cacggcacgc cgcgcggctg cctgcacggt gagtgtgcct tcctgccgct
      301 tgcgccgtac cactgcctca acctgtggcg ccacccggta gcgatgcgca tcccagtaga
      361 cgcgcaagtg ccgcaggaag cggcgccgtt ccgccatatc cagcccctgc cacaggcgct
      421 gcccgttggc ccgtatattg tcgaacacac cctgccacgg attgccctgc gccgccgccg
      481 atgcaatctg gcgccgtgcc tcgcgcaaca gggcaagtgt gctatgcggc aggtccgtgg
      541 cgtcaaacca ggtaaaaggc gccatcggcg cgagggcatg accgcgcgaa agctgccccc
      601 ggcgcgagaa ggcagtgatg ggcccttcat gaccacgacg gtcaagcgag gccaccacat
      661 ccgccatggt cagccctgtg ccgatgatgg ccacaggcgc atccgcttga atgctctcga
      721 gtgcttccgg tgcccaggga ttggcgatca tgcgcgggtt gtcccccagc gcgtctgcca
      781 gcagggcggg tacctccggc ggcgggtggc tggtggccag cactaggaca tctgcctcca
      841 cagtgccgcc cgcctcgagt tgcaccttgt acccctgctc atgtctgttg gccgctatgg
      901 cgcggccgcg cacatgggtg atgggcgcat ggatgcggct cttctgccgc gctgcaacga
      961 gttccgcaat gtagcgcccg aacacagcac ggcgcgggta gatatgacca tcactccaca
     1021 acgcttcatt atcctccgcc agcccgcccg cttcgcggaa ccagcggtca aaatggtccg
     1081 gcgtatcggg aaacagggtc atgcggcttg ccggcacgtt gatccggtgc gctggatcaa
     1141 cggaggaata ggccaccccg ccgcccagct gctctcgtgg ttcgatcacc gagatggaaa
     1201 gcggtaccgc gctatggtgc gccaattgcg ccgcgaaaaa cgcgccacag aacccgccgc
     1261 caatcacggc gactcgtaat ggcggcggac tcatgctgac acagagggcg tcgctgaaaa
     1321 gaggacgcga tgccaagggg gcaatttctc gcgtctcatc aacgccactc tgccgagatt
     1381 tagtggttgg ggcacaatgt tagcgctgag atggcgtggc acttggatct caaggagatg
     1441 aagcggcggt ttactgacag gttgggcaaa ctgtgcgaag gacagagttt ttgccgcgct
     1501 ctgggcagag gtaaaatcag ttagcatggg cgagcggctt ttaacacaca aacaccacaa
     1561 tatccatagg atagattaat ataataaatt ggcgaaacgc cagtgccatc gtctttcatc
     1621 actgcggatc tcggcgctca tgaattttgt gtgccatgtt gccgcccttt gaccaggggg
     1681 cggaactcat cacctgtcga gactaggcag ttgtcttttc ggggtttgct tacacagaac
     1741 aaatcgaaat cagcccatag agtttttgac gtcggccatc aaaaagcctg acgacccaca
     1801 aggcagagtt tactgtggtg aaatcaagga aggtccgagt tcgtctcacg gataggcttg
     1861 gccgcaactt ggcaaggaag ttgctctgga cctggtcatg gatcgggtta tggagcgctg
     1921 gctgtcatga gaatcctgct tgcggattcc aatgcggtcc gccgcgaggc gctggctgcc
     1981 cagttggcgg cgttagatgc cggttttttg gtcattcttc tggccgcgga cgagcctctt
     2041 aatgccgggg tggaaaggct gcggccggat gtggtgctgg tggatatggc ccggccggac
     2101 cgtgacgggc tggacagcct ggccttgccg ggcagcgcga tgccggtggt gatgttcctg
     2161 gatgacgggg atccgggttt tatgcgcgag gcgatcagcg cgggcctcag ctcttatcat
     2221 gggcagaatg tggcgccgga tgcggcgaag ctggtgatgc gcctggcgct tgccttcttc
     2281 cagcgcaccc aggcggcggc ggcgcggctg caagaggtgg aggaacaggc ggcgatgcgc
     2341 caggctgtcg atgcggccaa acgcctgctg atgagggaag agcgcatgag cgagccggcc
     2401 gcgcataaat ttttacagcg ccgcgccatg gaccagcaga agcgcatggc cgacgtggca
     2461 gccgaatttc tggcggcgcg gggcagacag gggacgataa atgaatgaaa cgatccgcct
     2521 tgggctgctg cgcttgtgcg atgccgcgcc tgtcattctg gcacagcatg aga
//
LOCUS       DASQCV010000732         1542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_154155, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000732 DASQCV010000000
VERSION     DASQCV010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_154155"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..295
                     /locus_tag="VEQ16_11525"
     CDS             <1..295
                     /locus_tag="VEQ16_11525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64516.1"
                     /translation="HQEKITLRDITDGLSSTLMVVEAAIPVPWTKPEDLHYDANGPLP
                     RFYNHPSGGFNAALVNGSVIRIDPRTVSERTLRNAITINDGQPLGDDWPLGGP"
     gene            473..1542
                     /locus_tag="VEQ16_11530"
                     /pseudo
     CDS             473..1542
                     /locus_tag="VEQ16_11530"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
BASE COUNT          275 a          530 c          462 g          275 t
ORIGIN      
        1 gcaccaggag aaaatcaccc tccgcgatat cacggacggt ctttccagca cattgatggt
       61 ggttgaagca gccattcctg tcccctggac caagccggaa gacctccact acgatgccaa
      121 cgggccgttg cccaggttct acaatcatcc atccgggggc ttcaacgccg ctcttgtcaa
      181 cggctctgtc atccgcatcg atccccgaac cgtcagcgaa cgaacgctgc ggaatgccat
      241 caccatcaac gatggccagc cgttgggcga cgactggcct ttgggcggcc cctgagtccc
      301 gccaccattt tttcatggac aggctcgccg atttcgtgta acttcaagcc tgagcatgaa
      361 tattgtgctc tcttccaggg gggaaacgat gaaccttttc acaagcgtca agcaacaaca
      421 tttgctctcg cgccggcaac tgttgcaagc cggcggtgtc ggcgcactga ccatgggact
      481 gccggggacg gtggccgcaa gcgtcgatgc caatcgcggt ctgcgcaacg gggcggccga
      541 gaagtcctgc atcttcatcc tcctgtgtgg cggcccgagc catctggaca cctgggacct
      601 gaaacccgaa gcgcccgaag atatccgcgg cccctatcgg cccatcgcca ccacggttcc
      661 cggcatgcgc atcagcgagc tgaaccggcg gctgtccacc atgacccggc acttcagcct
      721 gatccgctcg atgacgcacg tgggcaacat cagcaaccat ttcgatgcca tgcaccatct
      781 gctgagcggc caggcggccg ccccggcgga ttcgccttac ctcggctcga tcatgtcccg
      841 cgtcaggcaa accgagcgca acatcgccaa ctacgtctgg ctcatccgct gcgtgggcga
      901 tccggttttt tgtgccccga acattggcag cggcggacac ctgggggccc agcacacgcc
      961 cctgttcgtc ggctcggcca ccaaccaccc ggccatgccc accttccgcg ctcccgatga
     1021 attgcagccg gccgtcactc tcgagcgctt gcggggacgc caacgatgac tgaatactgt
     1081 gagtgcggaa accagcgcca gcgaatccat ccgggcaacg cgggattggc aggacttgag
     1141 ccgccgggct ttcgagctgg ccagcggttc cggcgcccag caagttttcg agctgcaccg
     1201 cgagccgccg gccgtgcgcc agcgctacgg catgcatccc ctcggccaga acctgctcct
     1261 ggcacgccgg cttgtcgaag cgggcgtcgg cttcgtcacc gtcaatggct ggaccggccc
     1321 ggctcccgga gtcggcggcg gcggaccacc ggccagtagc tgggacatgc acggcagcga
     1381 aatgggcatg ggcaatgcct tcggcaacgg ctcctacggc atgggctggt gcctgccatg
     1441 cctggatgaa gggctctccg ccctgctcgt cgatctgcgc gagcgtggcc tattggagcg
     1501 cactctcgtg gtggtgatgg gcgggtttgg ccgcacgccg cg
//
LOCUS       DASQCV010000733         2209 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_814668, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000733 DASQCV010000000
VERSION     DASQCV010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2209
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_814668"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            143..460
                     /locus_tag="VEQ16_11535"
     CDS             143..460
                     /locus_tag="VEQ16_11535"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit K"
                     /protein_id="HYP64517.1"
                     /translation="MSAATLYGFCAAVLVGLGLFGLIAHPQPLRKILAFNLIGGGVFL
                     LFGAVARRGAAAGFGGDPVPQALVITGLVVAFAATALAVALLLRLMGQPVRRVRGRMD
                     SRG"
     gene            496..1971
                     /locus_tag="VEQ16_11540"
     CDS             496..1971
                     /locus_tag="VEQ16_11540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HYP64518.1"
                     /translation="MLAIVLPVAGALLSLALGGRHAERITLGLMPAGVAVALAIGATV
                     WRTHHVLQYFVGNWAPPLGVVLRADGLSAAMMIAAAVLVSGIGLFARNQFSNPPDAEA
                     RAPLVFWTLLPANWGALNAVFIGGDLFNLYVALELLTFAAVPLVSLDGRAETLVAALR
                     YLLFALLGSILYLLGAVLLYGAYGTLDIVLLSDRIHAGPVASAAVSLMTAGLLAKAAL
                     FPFHLWLPPAHAGAPAPASALLSGLVVKAPFFLVVRLWFDVMTRLPEPAAAQLLGALG
                     AAAIIFGSVLALRQARLKLLIAYSTVAQIGYLFLMFPLAINPETGHPWGNAAWTGGVL
                     QAISHAFAKAAMFMAAGLIAEALGHDRIAGLSGIGRALPITVFAFALGGLSLMGLPPS
                     GGFVAKAMLLTAAVAEGQWWWAVVVLAGGLLAGGYVFLVLARALADASEPVPPLAAIS
                     TGRQAVPVALALCAVLLGFVPLRPFELLQIGRPEMVIGGLR"
BASE COUNT          264 a          700 c          759 g          486 t
ORIGIN      
        1 gtttcgcgct ggccggggcc ttcttgggat accctgagtc tcatgccaag ctgctgatat
       61 tgataataga aataccggtg acgctggcga tcgcggcaac gctcgccctg ctggtggccg
      121 gcccgccgga gcgggcacag cgatgagcgc ggcgacactt tacggattct gcgcggccgt
      181 gctggttggc ctcggcctgt tcggcctgat cgcccacccg cagccgctgc gcaagatcct
      241 cgctttcaac ctgatcggcg gcggcgtgtt tctgctgttt ggagcggtcg cccgcagagg
      301 tgccgcggcg ggtttcggcg gcgacccggt gccgcaagca ttggtcatca ccggcctcgt
      361 cgtcgcgttc gcggcgactg cgctggccgt ggctttgctg ctgcggctga tggggcagcc
      421 agtcaggcgg gttcgcggtc ggatggatag ccgaggctga tgcccgattc tgcgacccct
      481 ggggggttcc tcctcgtgct ggccatcgtt ttgcccgtcg ctggcgcgct gctttcactg
      541 gcgctcggcg ggcggcatgc ggagcgcatc accctcggcc tgatgccggc tggggtcgcg
      601 gttgctctgg cgatcggcgc taccgtgtgg cgcacccacc atgtgttgca atactttgtc
      661 ggcaactggg ccccgccgct cggtgtcgtg ctccgcgccg atggtctatc cgcagcaatg
      721 atgatagccg cggcagtgct ggtctccggc atcgggctat ttgcaagaaa ccagttctcc
      781 aacccgccgg atgcagaagc tcgggcgccg ctggtgtttt ggacattgct gccggctaac
      841 tggggagcac taaatgcggt gttcattggc ggcgacctgt tcaaccttta tgtcgcactc
      901 gagctgttga cattcgccgc ggtgccgttg gtctcgctcg acggccgcgc cgagacgctc
      961 gttgccgcat tgcggtacct gctgttcgcg ttgttgggct cgatcctcta cctgctcggc
     1021 gccgtgctgc tttacggcgc ttacggcacc ctcgatatcg ttctgttatc cgaccgcatc
     1081 catgcgggcc cggtggcgtc ggccgcggtc tcgctgatga ccgcggggct gctggccaag
     1141 gcggcgctgt ttcccttcca cctgtggctg ccgccggccc atgccggcgc cccggccccg
     1201 gccagcgccc tattgtcggg gctggttgtc aaggcgccct tttttctggt tgtccggttg
     1261 tggttcgacg tcatgacgcg gttgccggag ccggcggcgg cgcagctgct cggcgcgctg
     1321 ggggcagccg cgatcatctt cggcagtgta ttggcgctgc gccaggcgcg gctgaagctg
     1381 ctgatcgcct attcgacggt ggcgcaaatc ggctatctgt ttttgatgtt tccactcgcg
     1441 atcaaccccg aaacaggtca tccgtggggc aatgcggcgt ggacgggcgg agtgcttcag
     1501 gcgatctccc atgccttcgc caaggctgcg atgttcatgg cggcgggact gatcgccgag
     1561 gcgctcgggc acgaccgcat cgccggtctc tccggcatcg ggcgagcgct gccgatcacc
     1621 gtcttcgcct tcgcgctcgg cggcctgtct ctgatgggcc tgccgccgag cggcggtttt
     1681 gtggcgaagg cgatgctgct gaccgcggcg gttgcggaag gccaatggtg gtgggccgtg
     1741 gtcgtcttgg cgggtggtct gctcgccggc ggctacgtat ttctggtgtt ggccagagca
     1801 ctggctgatg cgagcgagcc ggtgccgccg ctcgcagcca tatcgaccgg ccggcaggcg
     1861 gtcccggtgg cactggcgct atgcgcggtg ctgctcggct ttgtgccgtt gcggcctttc
     1921 gagctgctgc agatcggacg ccctgagatg gtgataggag ggctcaggtg aagctccgct
     1981 cgaagcccat ttcttcggat tgtgggctgc ggctgtgact cgcgcacaag ctttgctctt
     2041 gatagccttg gcagcacccc tcgctatgct gtttgcctgt gtgtcgcaaa ccgtcaaaga
     2101 tcgcatgccg tccctgttgg cgctggcacc ggcgcctgcc ttagtcgcgg cactgctggc
     2161 cccggcgggg acgaccttaa tcctgccaga accgccgttt cgcatgatg
//
LOCUS       DASQCV010000734         1917 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_650774, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000734 DASQCV010000000
VERSION     DASQCV010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_650774"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..261
                     /locus_tag="VEQ16_11545"
     CDS             <1..261
                     /locus_tag="VEQ16_11545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64519.1"
                     /translation="GGTVLVNNGTAGAPLGGVGVVMHNIQLTPAASGATAKPATPGAA
                     PSASPAPVTTAPAATAPAPKPVIPATPAPASAAAPSAAPATP"
     gene            272..1396
                     /gene="ispG"
                     /locus_tag="VEQ16_11550"
                     /gene_synonym="gcpE"
     CDS             272..1396
                     /gene="ispG"
                     /locus_tag="VEQ16_11550"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HYP64520.1"
                     /translation="MNYREYQQITRRKSRQISVGAVKVGGDAPISVQTMTNTLTHDVD
                     ATVAQILRAEKAGVDIVRVSCPDEESTAALKHIIKQVNVPIVADIHFHYKRGIEAAEA
                     GAACLRINPGNIGSPERVREVIKAARDHNCSMRIGVNAGSLEKHLLEKYGEPNPDALV
                     ESALEHAKILQDHDFHEFKISVKASDVFMAVAAYQQLAEQCDHPLHIGITEAGGKRAG
                     TVKSSIGLGSLLWAGIGDTMRVSLSAEPEEEVHVGWDILKSLGIRHRGVRVISCPSCA
                     RQGFNVIKTVETLESRLAHIEAPITLSIIGCVVNGPGEALMTDIGLTGGGNGRHMVYA
                     SGKTDHTISDEEMVEHLVGLVERKAAQIEAAKAAEKAAAE"
     gene            1468..>1917
                     /locus_tag="VEQ16_11555"
     CDS             1468..>1917
                     /locus_tag="VEQ16_11555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HYP64521.1"
                     /translation="MSNQLQPVRGTRDLLGEDMARFSHVVETARRVTGLYGFSEWQTP
                     IFEDTRVFSRTLGETSDVVTKEMYSFEDRGGDSITLRPEGTAGMCRALITNGLTQTLP
                     QKIFYAGPMFCYERPQKGRYRQFHQIGTELIGPATPLADAEIIAAGWQ"
BASE COUNT          358 a          560 c          657 g          342 t
ORIGIN      
        1 ggcggcacgg tgctggtgaa taacggcacg gccggtgcgc ctttgggcgg cgtgggcgtg
       61 gtgatgcata atatccagct gacccctgct gcttccggtg ccaccgcgaa accggccacg
      121 cctggggcgg cgccttctgc cagccccgcg cccgttacga cagccccggc ggccaccgcc
      181 ccggcgccca agccggtgat cccagccacg ccggctcccg cgtcggccgc cgccccgtct
      241 gccgctcctg ccacgccatg aggaccaagc gatgaattac cgcgaatacc agcagatcac
      301 ccgccgcaaa tcacgccaga tcagcgtcgg cgcggtgaaa gtgggcggtg acgcgccgat
      361 ttcggtgcag accatgacca acacgttgac gcatgatgtg gacgcgacgg tggcgcagat
      421 tctgcgtgcc gagaaagcgg gcgtggacat cgtacgcgtg agctgcccgg atgaggaaag
      481 cacggcggcg ctgaagcaca tcatcaagca ggtgaatgtg ccgatcgtgg ccgatattca
      541 tttccattat aagcgcggca tcgaggcggc tgaggcgggc gctgcgtgtc tgcgcatcaa
      601 tcccggcaat atcggcagcc cggagcgtgt gcgcgaagtc atcaaggcgg cgcgcgacca
      661 taattgctcg atgcgcatcg gcgtgaatgc cggcagcctg gagaagcatc tgctggaaaa
      721 atatggcgag cccaacccgg atgcgctggt ggaatccgct ttggagcatg cgaagatcct
      781 gcaggaccat gatttccacg aattcaagat ttccgtgaag gcgtcagatg ttttcatggc
      841 cgtggcggcg taccagcagc tcgcggaaca gtgcgaccat ccgcttcaca tcggcatcac
      901 cgaggcgggc ggaaagcgtg cgggaaccgt aaaatcgtcc atcgggctgg gctcgctgct
      961 ctgggccggg attggcgata cgatgcgcgt gtccctctcc gccgagcccg aggaagaggt
     1021 gcatgtgggt tgggatattc tgaaatcgct cggcatccgc catcgcggcg tgcgcgtgat
     1081 ttcctgcccc tcctgcgcgc gccagggttt caacgtgatc aagacggtgg agacgctgga
     1141 aagccggctc gcgcatatcg aggcgccgat caccctctcc atcattggct gcgtggtcaa
     1201 cgggccgggc gaggcgctga tgaccgatat cggcctgacc ggcggcggca atgggcggca
     1261 tatggtgtac gcctccggca agaccgacca cacgatttcc gatgaggaga tggtggagca
     1321 tctggtcggg ctggtggagc gcaaggcggc gcagatcgag gcggccaagg cggcggaaaa
     1381 agccgcggcc gagtagcttc gtctctggag attttatgtc cggagcgggt ggccgctccg
     1441 gatttttatt ttgatggtgt gataaatatg tcgaatcaat tgcagcctgt gcgcggcacg
     1501 cgtgatcttc tgggtgagga catggcgcgg ttttcccatg tggtggagac ggcgcgccgc
     1561 gtaacggggc tttatgggtt ttccgagtgg cagacgccga ttttcgagga tacgcgggtg
     1621 ttttcgcgca cgctgggcga gacctccgat gtggtgacga aggagatgta cagcttcgag
     1681 gatcgcggcg gggatagcat cacgctgcgg cccgagggca cggcggggat gtgccgcgcg
     1741 ctgattacca acgggctgac gcagacgctg ccgcagaaga ttttctatgc cggaccgatg
     1801 ttctgctatg agcgcccgca aaagggacgc taccggcaat tccaccagat cggcacggaa
     1861 ctgatcggac ccgcgacgcc gctggcggat gcggagatca tcgccgccgg ctggcag
//
LOCUS       DASQCV010000735         1995 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2641196, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000735 DASQCV010000000
VERSION     DASQCV010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1995
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2641196"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(275..>1995)
                     /locus_tag="VEQ16_11560"
     CDS             complement(275..>1995)
                     /locus_tag="VEQ16_11560"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HYP64522.1"
                     /translation="APVSVTPATPPKRREAMLNSTLDLAAGGTGWTPLRSQYSKPLYV
                     LMAISALVLLLACTNVANLLLARSTARGREFAIRLAIGAGRPRVMRQLLVESLLLSLL
                     GAALGLVVAQFGSRLLLGRVSQNIQLDVGLNLPVLGFAVAAAILTGVLFGLVPAFRST
                     AGGTGLALRTASAFGQSHGRLPWLLVTVQVALSLLLVIGAGLFTRTLYNLQTIDPGFR
                     HEGVLMVDLDGRRVVHGGAEAGARIAALFRDSLEAVSGLRGVSAAAVSNYTPISGGYW
                     SQAVQVKGQTASEEEIVFFGVSPGFFAALSIPLRAGRDFSMRDDGNAPPVAIVNEEFV
                     RRFIPGGRNPLGQVVSASDSRFWQTMEIVGLVANSRPYLLREPVRPCIYVPFFQQPAD
                     RIGYGTLEIKANGSLNAVSAEIARTLGRQLPGVPMRVRPFTAQVENSIRREVLMAQLA
                     EFFGVLALILAAVGLYGLLAYAVAQRTSEVGLRIALGAEPRAVARMLLVRGLRPVAAG
                     IPIGLTVAWWACRFVSGLLYGIRPFDAGSIAGAVALLTLVALAAGSVPARRAAKVDPM
                     VALRQD"
BASE COUNT          419 a          697 c          607 g          272 t
ORIGIN      
        1 aacgcgcagt gggctggggc tcctgtttcg gatgtgaggc ggctgctgag gaattatcct
       61 gagcaaccgc ccggctcacg cacaatccaa tcagaatccc aataacaacg gaaccgatga
      121 gaggaaagca ggcccggtga aaccgcacgg cggaactcct gacgtaccca tgagtctatc
      181 agttttcggc gaatccgggt ctggcagcgg agcacgactt gtcaggaaag ttccgggctg
      241 tccaattcac cgtgaacccg cactccctcc cagctcaatc ctgccggagc gcaaccatcg
      301 gatccacctt tgccgcacgg cgcgccggca ctgagcccgc cgccagcgct accaacgtca
      361 acagagctac cgccccggct atggaccccg catcgaaagg tcttattcca tatagcaagc
      421 cagagacgaa gcggcacgcc caccaggcga cggtcagacc aatcggaatt ccggcagcca
      481 ccggccgcaa cccgcgtacc agcaacatgc gggccacagc acggggctcg gcgccgaggg
      541 cgatccgaag gcccacctcg gaagtgcgct gtgccaccgc atacgcgagc aatccgtaca
      601 gccccaccgc ggcgaggatc agcgccagaa ccccgaaaaa ttcagccaat tgcgccatca
      661 gaacctcgcg ccggatcgag ttctccacct gcgcggtgaa tggccgcacc ctcatgggca
      721 ctccgggaag ctgtcgcccg agcgtccgcg cgatctccgc ggacacagcg ttcagcgaac
      781 cattcgcttt gatctcgagc gtgccgtatc cgatccgatc cgcgggctgc tggaagaacg
      841 gaacataaat gcaagggcgt accggctcgc gcaacaaata gggccgtgaa ttggccacca
      901 ggccgacgat ttccatggtc tgccagaagc gcgaatcgga ggccgaaacg acctgaccga
      961 gcgggttgcg gccgcccggg atgaaacgcc gcacaaactc ttcattcacg atcgcaaccg
     1021 ggggcgcgtt cccgtcgtcg cgcatcgaaa aatcccgtcc cgcccgcagc ggaatgctca
     1081 aggcggcgaa gaatccgggc gacacgccga agaatacgat ttcctcttcg gatgcggtct
     1141 gccctttgac ctgcacggcc tgcgaccagt atccgcccga gatcggcgtg tagttggaga
     1201 ctgcagcggc gctcacgccg cgcagcccgg acaccgcctc caggctgtcg cgaaacagcg
     1261 ccgcgatccg cgcgccggcc tccgcgccgc cgtgaaccac ccggcgcccg tcgaggtcga
     1321 ccatcagcac gccctcgtgg cggaagcccg gatcgatcgt ctgcaaattg tacagcgtgc
     1381 gggtgaacag gccggctccg atcaccagca ggagggacag cgccacctgc acggtaacca
     1441 gcagccatgg cagccggcca tgggactgcc cgaacgccga tgccgtccgc agcgccagac
     1501 ccgtgccccc ggcggtggag cgaaacgcgg gaacgagccc gaacaacact ccggtgagga
     1561 ttgcagccgc caccgcgaac cccagcacgg gcagattgag tccgacgtct agttggatat
     1621 tctgcgaaac cctcccgagg agcagccggc tgccgaactg cgcgaccacc aggccgagcg
     1681 ccgccccgag cagcgaaagc aacaggcttt cgaccagcag ctgtcgcatc acgcgcggac
     1741 ggccggcgcc aatggcgagg cgaatcgcga actcgcgccc ccgcgccgtg gagcgcgcca
     1801 gcagcaggtt cgccacgttg gtgcaggcga gcaacagcac cagggccgaa atcgccatca
     1861 gcacgtacag aggtttcgaa tattggctgc gcagcggagt ccatccggtg ccccctgcgg
     1921 ccaggtcgag tgtggaattg agcatcgcct cccgccgctt cggcggcgtt gcaggcgtga
     1981 ccgagaccgg cgcca
//
LOCUS       DASQCV010000736         1542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1150857, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000736 DASQCV010000000
VERSION     DASQCV010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1150857"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..250)
                     /locus_tag="VEQ16_11565"
     CDS             complement(<1..250)
                     /locus_tag="VEQ16_11565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP cone domain-containing protein"
                     /protein_id="HYP64523.1"
                     /translation="MRCPFCGESDTQVKDSRPTDDGSAIRRRRFCAGCGQRFTTVERV
                     QLRELMVLKTDGRRVAFDRDKLARSIRVALNKRPVDEER"
     gene            complement(260..1471)
                     /gene="glyA"
                     /locus_tag="VEQ16_11570"
     CDS             complement(260..1471)
                     /gene="glyA"
                     /locus_tag="VEQ16_11570"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HYP64524.1"
                     /translation="MNDQSFAPRLERFFAAPLAEVDPEIAACIQEELKREQDGIELIA
                     SENIVSAAVLAAQGSVFTNKYAEGYPGKRYYGGCFPSDLVENLAIERAQKIFGAGFVN
                     VQANSGSQANQSVFLALIQPGDTILGMSLAAGGHLTHGAAPNLSGKWFNAIQYGVRKE
                     DGLLDYEELERLAKEHKPKLIIAGGSAYPRFIDFPRIRAVADEVGAFFMVDMAHFAGL
                     VAAGIYPSPLPHAHVVTTTTHKTLRGPRGGMVLTNDEAIAKKINSATFPGLQGGPLMH
                     VIAAKAVAFGEALQPSFARYAQAVVDNAKALAETLAAEASLERAHITANKNAIPFDPA
                     KPAITSGIRLGTPAATTRGFGTAEFKDIGQMIGEVLDGLARSNDGGNTAAEEAVGVRV
                     KALCARFPIYR"
BASE COUNT          257 a          477 c          542 g          266 t
ORIGIN      
        1 ggcgctcctc atccaccgga cgcttgttca gcgctacgcg gatggaacgg gccagcttgt
       61 cgcggtcgaa ggcgacgcgg cggccatcgg tcttcagcac catcagctcg cgcagctgca
      121 cgcgctcgac cgtggtgaaa cgctgcccgc aaccggcgca gaagcggcgg cggcggatgg
      181 cgctgccatc atccgtggga cggctgtctt ttacctgggt atcggactcg ccacagaagg
      241 ggcagcgcat gcggccggct taccggtaga tggggaagcg ggcgcagagg gctttcaccc
      301 gcacgcccac cgcctcttcg gccgccgtgt tgccgccatc gttggaacgg gccaggccgt
      361 ccagcacttc gccgatcatc tggccgatgt ccttgaattc ggccgtgccg aagccgcgcg
      421 tggtggcggc cggggtgccg aggcggatgc cggaggtgat ggcgggcttg gccgggtcga
      481 acgggatggc gttcttattg gcggtgatat gggcgcgctc cagcgacgcc tcggcggcca
      541 gcgtctcggc cagcgccttg gcgttgtcga cgacggcttg tgcgtagcgt gcgaagctcg
      601 gttgcagtgc ctcgccaaac gccaccgcct tggcggcgat gacatgcatc agcgggccgc
      661 cctgcaggcc ggggaaggtc gccgagttga tcttcttggc gatggcctcg tcattggtga
      721 gcaccatgcc gccgcgcggg ccgcgcaggg tcttgtgcgt ggtggtggtc accacatggg
      781 cgtgcggcag cgggctggga tagatcccgg ccgcgacgag gccggcgaaa tgcgccatgt
      841 ccaccatgaa gaacgccccc acctcgtccg ccacggcgcg gatgcggggg aaatcgataa
      901 agcgcggata ggccgagccg ccggcgatga tgagcttggg cttatgctcc ttggcgaggc
      961 gctccagctc ctcataatcc aggaggccat cctccttgcg cacgccatac tggatggcgt
     1021 tgaaccattt gccggacagg ttgggcgcgg cgccatgggt gagatgcccg ccagcagcca
     1081 gcgacatgcc gagaatggtg tcaccgggtt ggatcaaggc caggaacacc gactggttgg
     1141 cctgggagcc ggaattggcc tgcacattga cgaagccggc gccgaaaatc ttctgcgcac
     1201 gctcgatggc gaggttttcc acgaggtccg aggggaagca accgccataa tagcgcttgc
     1261 cgggatagcc ctcagcgtac ttattggtga agaccgagcc ctgcgccgcc agcaccgcgg
     1321 cggagacgat attctcggac gcgatcagct cgataccatc ctgctcgcgc ttcaactctt
     1381 cctggataca ggccgcgatc tcagggtcga cctcggccag cggggcggcg aaaaaacgct
     1441 ccaggcgggg ggcaaaactc tggtcattca tggctgggtc tccgggttga ttttggcaag
     1501 gcggcgctca tggcggccac cttcaaatgg ggtggcgagg aa
//
LOCUS       DASQCV010000737         3259 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2144644, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000737 DASQCV010000000
VERSION     DASQCV010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3259
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2144644"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            57..602
                     /locus_tag="VEQ16_11575"
     CDS             57..602
                     /locus_tag="VEQ16_11575"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP64525.1"
                     /translation="MDAGQEKPKAFLAHEEIRACVARIARGEDRRDAALLRESFWSDA
                     ICDFGIFARNFNEYLAWVVPGAEAIIVTQHTLGQSHIELKDGAALVETHVTAYHRVDM
                     GTEQRDTVIGGRYLDRLEERDGEWRIARRVMLYDRFRDEGVSVDWGQGLMGMPFSAGH
                     FTGRAADDYSEAFFAARDAVS"
     gene            637..1185
                     /locus_tag="VEQ16_11580"
     CDS             637..1185
                     /locus_tag="VEQ16_11580"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP64526.1"
                     /translation="MDSEKLKKLERLLDEQEIRDCLTRFSRGMDRFDREIYLSAFHGD
                     AVMAAGPFVGSPADCYDWAIPMHEAGQVATHHNLLNCTIEIDGDVAHTETYYLFAGRN
                     RDESNWIAGGRYIDRLEKRDGVWRIAMRSNAIEWSGMVPTMPLPFHDVPDIQGNGAPA
                     RSKDDPSYRRPLVNLRAPKIPS"
     gene            1216..2133
                     /locus_tag="VEQ16_11585"
     CDS             1216..2133
                     /locus_tag="VEQ16_11585"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP64527.1"
                     /translation="MTERRFDGRVAVITGAGRGLGRAYALLLGSLGAKVVVNDIGAAM
                     SGTGADVGPADEVVREIKAAGGEAVANTDSVATAEGGKAIIQAALDHYGRIDILIHNA
                     GNVRYGALAEISNEDFRAVLDVHLLGAFNVVRPAFEPMCKANYGRIVLTSSIGGLYGM
                     NNTVNYAMSKAGMIGLNNVAAIEGAEHNVKCNAIVPGAVTRMADGLDTSFYPPMGPEL
                     VAPVVGWLAHESCSITGEMLVSIAGRVGRAYIVETEGVFQPSWSIDEVAERIDEIRDP
                     ANLWVLHPAEHGHMDHIKRSCEMARTAAE"
     gene            2287..2847
                     /locus_tag="VEQ16_11590"
     CDS             2287..2847
                     /locus_tag="VEQ16_11590"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP64528.1"
                     /translation="MTDTELEQLRRDVQYLKDRQAIYDCIALHARGHDRHDVDLLTAA
                     YHEDGVDEHGFAINPGPQYADWSNKVHSAGSSLHTHNITTHLCEIEGDVAHAESYVMV
                     ALLNLDGVSARIISGRYIDRLEKRDGVWRIAVRRSTVDVLLAGDASILKAPVFTAQGY
                     IKGTQDKSDLAYQRPVTLEETPAPRW"
     gene            complement(2813..>3259)
                     /locus_tag="VEQ16_11595"
     CDS             complement(2813..>3259)
                     /locus_tag="VEQ16_11595"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HYP64529.1"
                     /translation="CSLPLLLAGPADSPLPAGKKVPFSEAAKLPLVLPSHHLGLRAVI
                     NNAAMQAQLKLNLRMEADFTRLLKDLLVQGVGYSFLPACFCKRETASAQLQLWPVGTP
                     SLAMDVTLASRKNSQLTGPRIRAFETEIARIAAEHLTSAAPVSPPA"
BASE COUNT          607 a          837 c         1181 g          634 t
ORIGIN      
        1 tggcccaaag ggtatggagg ccggtcagtc aaagcaaaat cgcgggagag atgggggtgg
       61 acgcgggtca agaaaaaccc aaggcgtttt tggcgcatga ggagatcagg gcatgtgttg
      121 cccgtatcgc gcgcggggaa gacaggcggg atgcggcctt gctgcgcgaa tccttctggt
      181 ctgacgccat ttgcgatttc ggcatctttg ctcggaattt caatgaatat ctcgcctggg
      241 tggtgccggg ggcggaagcg atcatcgtga cgcagcacac gctcggccag agccatatcg
      301 agctcaagga cggcgcggcg ctggtggaaa cccatgtcac ggcctatcat cgtgtggata
      361 tgggaacaga gcagcgcgac accgtgattg gcgggcgcta tctcgaccgg ctggaagagc
      421 gcgacggcga atggcgcatc gcgcggcgcg tgatgctgta tgataggttc agggacgagg
      481 gtgtttcggt ggattggggg caggggttga tgggcatgcc cttttcggcc ggccatttca
      541 ccgggcgtgc cgccgatgat tacagcgagg cgtttttcgc ggcgcgggac gctgtttcgt
      601 aatcgcgcgg cgctgcggtt tgcttaaggt gaggccatgg attctgagaa attgaaaaaa
      661 ctggaacggt tgctggatga gcaggagata cgcgactgtt tgacgcgttt ctcgcgcggc
      721 atggatcggt tcgaccgcga gatttatctc tccgcctttc atggagatgc ggtgatggcg
      781 gcggggccgt tcgtcggcag cccggcggat tgctatgatt gggcgatacc gatgcatgag
      841 gcggggcagg tggcgacgca tcacaacctg ctcaattgca ccatcgagat cgatggcgat
      901 gtggcgcata cggaaaccta ttatctcttc gccgggcgca accgcgatga gagcaactgg
      961 attgccggcg ggcgctatat cgacaggctg gagaagcgtg atggcgtatg gcgcatcgcc
     1021 atgcgcagca atgccatcga atggtccggc atggtgccga ccatgcctct gcccttccat
     1081 gacgtgccgg atattcaggg caatggcgca cccgcgcgca gcaaggacga cccttcctac
     1141 cggcggccgc tggtgaactt gcgggcgccc aaaattccgt cttgataggc gcaacgaaaa
     1201 acgaggagag agtccatgac agaacgcaga tttgatggtc gcgtggcggt gattaccggg
     1261 gcgggtcgcg ggctgggccg ggcctatgcg ctgctgctgg gctcgctggg cgcaaaagtg
     1321 gtggtgaatg atatcggcgc cgccatgtcc ggcacgggtg ccgatgtggg gccggccgat
     1381 gaggtggtac gggagattaa agcggcgggc ggcgaggctg ttgccaacac agatagcgtg
     1441 gcgacggcgg agggcggcaa ggcgattatc caggcggcgc tcgaccatta cgggcgcatc
     1501 gatattctca tccataatgc tggcaatgtg cgttacggcg cgctggctga gatcagcaac
     1561 gaggatttcc gcgccgtgct cgatgtgcat ctgctgggtg ccttcaatgt ggtgcggccg
     1621 gccttcgagc cgatgtgcaa ggcgaattat gggcgcatcg tgctgacctc ctccattggc
     1681 gggctgtacg gcatgaacaa caccgtgaat tacgccatgt ccaaggcggg gatgatcggg
     1741 ctcaacaatg tcgccgccat tgagggcgcc gagcataatg tgaaatgcaa tgccatcgtg
     1801 cctggtgcag tgacgcgcat ggcggatggg ctggatactt ccttctaccc gccgatgggg
     1861 ccggagctgg tggcgcccgt ggtgggctgg ctggcgcatg aatcctgctc gattacgggt
     1921 gagatgctgg tatcgatcgc cgggcgcgtg gggcgggctt atattgtgga gacggagggc
     1981 gtgttccaac cctcctggag catcgacgag gtggcggagc ggatcgatga gatacgcgac
     2041 ccggccaatc tgtgggtgct gcacccggcc gagcatgggc atatggacca tatcaagcgc
     2101 tcctgcgaga tggcgcgcac cgctgccgag tagggcgtcc gccttgagcc gcctggatcg
     2161 gcgcggagat ggcgcagaaa tacgggataa aagatgcggg cgggcggtag ccggccgcct
     2221 atcgtgacgc gcataaggtt gagccgcacg agcaatattc ctacgtcaaa cgctgaggag
     2281 gacagaatga ccgatacgga attggagcaa ctccggcgcg atgtgcagta tctcaaggac
     2341 cggcaggcga tttatgattg catcgcgttg catgcgcgtg ggcatgaccg gcatgatgtg
     2401 gatctgctga cggccgccta tcatgaggat ggggtcgatg agcatgggtt cgccatcaat
     2461 cccgggccgc aatatgcgga ctggtccaac aaggtgcatt ccgccggttc gtcgctgcat
     2521 acgcataata tcaccacgca tctgtgcgag atcgagggcg atgtggcgca tgcggagagc
     2581 tatgtgatgg tggcgctgct caatctcgat ggtgtttcgg cgcggatcat cagcgggcgt
     2641 tatatcgacc ggttggagaa gcgcgacggg gtgtggcgga ttgcggtgcg gcgttcgacc
     2701 gtggatgtgt tgctggcggg tgatgcgtcg attctgaagg cgcctgtgtt taccgcgcag
     2761 ggttatatca agggcacgca ggataagagc gatcttgcct atcagcggcc ggttacgctg
     2821 gaggagacac cggcgccgcg ctggtgaggt gctctgccgc gatgcgcgcg atttcggtct
     2881 cgaaggcgcg gatgcgcggg ccggtgagct ggctgttctt gcgtgaggcg agggtgacgt
     2941 ccatcgccag gctgggcgtg ccgaccggcc agagttgcag ctgagcactg gcggtttcgc
     3001 gcttgcagaa gcaggcgggc aggaaggaat agccgacgcc ctgcacgagc agatctttca
     3061 gcagccgcgt gaaatccgcc tccatgcgga gattgagctt gagttgcgcc tgcatggccg
     3121 cgttgttgat gacggcgcgc aggccgagat gatgtgaggg cagtacgagc ggcagcttgg
     3181 ccgcttcgct gaaaggcact ttcttcccgg cgggcagggg gctgtcggcg gggccggcca
     3241 gcaggagggg caggctgca
//
LOCUS       DASQCV010000738         2364 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1648953, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000738 DASQCV010000000
VERSION     DASQCV010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2364
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1648953"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            351..>2364
                     /locus_tag="VEQ16_11600"
     CDS             351..>2364
                     /locus_tag="VEQ16_11600"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF020243.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP64530.1"
                     /translation="MLLYLPACPDARWEAAMLASARAAVQLRPPARFVVVHHGGGGAA
                     LARTVFLEARDLPVCVVDLPEGDSQAVERVVAEASAVRRYSEAHYDAGGVRHEPVWST
                     VSHQRKPLPLGPDDVLLATGGAKGIGAECAIEAARISGARLAILGTSAPEGNPNLERM
                     RAQGIRCEYIRADVTDGAAVAAAFDRVQRMLGPVTAILHCAGVNQPRSVAELDEAQFR
                     HTIAVKVAGLRHLLAAAGPSVKLAVAFGSIIARIGLPGEAHYAVANEWMARDFARWGE
                     EHPQCRTLTLEWSVWSGAGMGDRLGRLEALKRMGVSPISIEEGVRAFCDALSSDANGA
                     VIVAGRFGAQPTVQFDAPDLPLLRFLERTRVYYPGIELVCEADLSARNDPYLEDHVFE
                     GARLFPGVMALEAMAQAAMAAAGSATPPAFEQVRFARPIIVPPDSALTVRLAALVRQD
                     GAVEVALRSAETSFQTDHFRAVCRFGTGRPTMALNLHEDREPPQVDPVRDLYGGLLFQ
                     QGRFRRLRSYLRLHSTECIAETAEGEPRHWFHRHLPQKLTLGDPGLRDAAIHAGQACI
                     PHARVLPAGAAKIWADPPARAAGHRICARERSREGSSLIYDLEIQTLEGEPVECWSGL
                     EMRIVGPAEPPQRWPAALLAPYLERRIAETTGLDGVSVALRPNGIAR"
BASE COUNT          350 a          736 c          828 g          450 t
ORIGIN      
        1 tgcatctcaa ttccatcgca gtggctcaaa ttgccgctga agcggcgcgt caactgaaac
       61 tgccgcccct ggcagcgccg ctcgaatacg ccgggctgag catcggtgag ttggccggag
      121 cgttgatgga aatgagcacg gcggctccag gagacgattc cgtccatccg ccgggcgtgg
      181 ccgcgtgggt cagaaatttc cagacccgtc tggttccccg cgcgttggtt tcgagtccgg
      241 ctcagaatgc tccccgactg ggagcccagc ccgcggggcc aggagaatgg caattcttcg
      301 gagccgtctc ggaggagctg cgcgaggcgc cgctcccctc gggcggaggc gtgctgctgt
      361 acctgccggc ctgcccggac gcacgctggg aggccgcgat gctggcatcg gcccgcgcgg
      421 ctgtgcaact ccgacctcct gcgcgattcg tggtcgtcca ccacggtggt ggaggcgctg
      481 cgttagcccg caccgttttt cttgaagcgc gtgatctgcc tgtgtgtgtc gtagatttgc
      541 ccgaaggcga ctcccaggcg gtggagcgag ttgtggcgga ggcatccgcc gtgcgccgtt
      601 attccgaggc ccattacgat gccggcggcg tccgccatga gccggtgtgg tcaacggtca
      661 gtcaccagcg gaaaccattg ccgctgggac ctgacgatgt tttgctcgcg actggaggcg
      721 ccaaagggat tggcgcggag tgcgccatcg aggccgcccg catcagcggc gcgcggctgg
      781 cgatcctcgg cacgtcggcg ccggaaggga acccgaatct ggagcgcatg cgcgcgcagg
      841 ggatccgctg cgaatacatt cgcgcggatg tgaccgatgg ggcggcggtc gccgccgctt
      901 ttgatcgggt gcagcgcatg ctgggtccgg tcaccgccat tttgcattgc gccggagtca
      961 accagccgcg ctccgtggcg gagttggacg aggcccaatt ccggcatacg attgccgtga
     1021 aagtggcggg gctgcgccat ctgctggctg ccgccggccc cagtgtcaaa ttggcggtgg
     1081 cgttcggttc catcatcgct cgcatcggcc tgcctggcga ggcgcactac gctgtggcca
     1141 acgaatggat ggcgcgcgat ttcgcgcgct ggggcgaaga gcatccgcag tgccgcacgc
     1201 tgacgctgga atggtcggtg tggtccggcg ccggcatggg cgaccgtttg gggcgcctgg
     1261 aggcattgaa acgcatgggc gtttcgccca tctccatcga agagggcgtg cgggcttttt
     1321 gcgatgctct aagctcggat gccaatggcg ccgtgattgt cgccggccgg ttcggagcgc
     1381 aacccaccgt tcaattcgac gcgcccgatt tgccgctgct ccgcttcctg gagcgtaccc
     1441 gcgtgtatta tcccggcatc gagctggtgt gcgaggcgga tctgtcggcg cgcaacgacc
     1501 cgtacctgga agatcatgtg ttcgagggag cccgcctttt tccgggcgtg atggcgctgg
     1561 aagccatggc gcaggcggct atggcggccg cgggttcggc aacgcctcct gctttcgagc
     1621 aagtgcgatt cgcgcgcccc attatcgtgc cgccggatag cgccttgact gtacgcctgg
     1681 ctgcgttggt tcggcaggat ggcgcggtgg aggttgccct gcgcagcgcc gagacttcgt
     1741 tccaaactga tcatttccgc gctgtttgcc ggttcgggac tggccggccg acaatggcgc
     1801 tgaatctgca tgaggaccgg gaacctccgc aggtcgatcc tgtccgggat ctgtatggcg
     1861 ggctgctctt tcaacagggc cgattccgcc ggctgcgctc ttacctccgc ctgcactcta
     1921 ccgagtgcat cgccgaaaca gccgagggcg agccgcggca ctggttccat cgtcatctgc
     1981 ctcagaagtt aacgctgggc gacccggggc tccgcgatgc ggcaattcac gcgggtcagg
     2041 cttgcattcc ccacgcgcgg gtgctgcctg ccggagccgc gaagatttgg gcagacccgc
     2101 cggctagagc tgcggggcat cgcatctgtg cccgcgaacg gtcccgcgag ggtagctcgc
     2161 tgatttacga tctggagatc cagactttgg aaggcgaacc ggtggaatgc tggagcggct
     2221 tggaaatgcg cattgtgggt ccggccgagc cgccccagcg ctggcccgca gctttgctcg
     2281 ctccatacct ggagcgccgg attgcggaga cgactgggct cgacggcgtg tcggtcgcgt
     2341 tgcgcccgaa tgggatcgcg aggg
//
LOCUS       DASQCV010000739         1885 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_487469, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000739 DASQCV010000000
VERSION     DASQCV010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487469"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(289..1152)
                     /locus_tag="VEQ16_11605"
     CDS             complement(289..1152)
                     /locus_tag="VEQ16_11605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012224363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HYP64531.1"
                     /translation="MSAKDQPKRLGRGLAALLGDAAVPQTASAPGVQQLSVDVLEPSP
                     FQPRQEMDEEALQELADSIAQRGILQPLLVRPTPGRPDHYQIIAGERRWRAAQRVSVH
                     EVPVLVRPLTDSDAMAAGLVENLQREDLNAIEEAEGYKRLLEEFSLSQDKLGEAVGKS
                     RAHIGNIIRLLKLPEPVRAMLRQGQLSAGHARALLTHPDPVKAAKEVVKRDLSVRQTE
                     ALAAGAARPAKPAQASAIRADADIEALASSLSERLGLKVQIKFNGKSGSVTFNYANLD
                     QLDSLLARLNG"
     gene            complement(1149..>1885)
                     /locus_tag="VEQ16_11610"
     CDS             complement(1149..>1885)
                     /locus_tag="VEQ16_11610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HYP64532.1"
                     /translation="KTTTAINLAAALAVGGLKILLIDIDPQGNASTGLGIGHDARQGG
                     SYALLANETTLTAAIRPTGVENLTIVPAVPDLIGADLEFGQEERREFLLRDALAKDCP
                     ADIIFIDCPPGLGLLTLNGLVAADAVLVPLQAEFFALEGISQLMRTIDMVKQSLNPAL
                     QMEGIVLTMTDKRNNLSEQVTADVRGYFGAKVFETAIPRNIRITEAPSHGIPVLLYDF
                     RSTGAQAYLALAAEFLRRAKARKVMA"
BASE COUNT          304 a          507 c          720 g          354 t
ORIGIN      
        1 gaggcggcgg attcatcgag cgcggtgatc tcggcctgcc tggagttcat ctcaagatta
       61 taggagagat agagcgccgt ggccgtgccg gcggccatga ggatgagcgc gatgaggcag
      121 agcagcatga actgccagga gatggagagt cggccaagca ggcgggacat gataagctcc
      181 gtgcatccac cgcggaaatg cggcgatgcc agggctttta agggccggtg gataatgtcc
      241 cgttaatgcg gctctatggc cggcaaaggc gatgcttcac gtgaagcatc acccgttgag
      301 ccgggcgagc agggaatcca gctggtccag attggcataa ttgaaagtga cgctgccgct
      361 cttgccgttg aatttgatct gcaccttcag gccgagccgc tcggacaggc tgctggcgag
      421 ggcttcgatg tcggcatcgg cgcggatggc gctggcctgg gccggtttgg cggggcgggc
      481 ggcccctgct gcgagggctt cggtctggcg cacggagagg tcgcgcttga cgacctcttt
      541 tgcggctttc accgggtccg gatgggtgag cagagcgcgg gcatggccgg cggagagctg
      601 gccctggcgc agcatggcgc ggaccggctc cggcagcttg agcaggcgga tgatgttgcc
      661 gatatgggcg cgggatttgc cgaccgcttc gccgagcttg tcctggctca ggctgaattc
      721 ctccagcagg cgcttatagc cctcggcttc ctcgatggcg ttgaggtctt cgcgctgcag
      781 gttttcgacc aggccggcgg ccatggcgtc gctgtcggtc agggggcgga cgagaaccgg
      841 gacctcatgc acggaaacgc gctgggcggc gcgccagcgg cgctcgccgg cgatgatctg
      901 ataatggtca ggccggccag gggtggggcg gaccaggagc ggctgcagga tgccgcgctg
      961 ggcgatggaa tccgccagtt cctgcagggc ttcctcgtcc atttcctggc gcggctggaa
     1021 ggggctgggc tccagcacat cgacggagag ttgctgtacg ccgggagcgg aggcggtttg
     1081 cggcacggcg gcgtcgccga gcagggcggc gaggccgcgg cccagacgct tgggttggtc
     1141 ttttgcgctc atgccatcac cttccttgct tttgcccgcc gcagaaattc cgccgccagc
     1201 gccaggtagg cctgggcgcc ggtggagcgg aaatcataaa gcaggacggg gatgccgtgg
     1261 ctaggggcct cggtgatgcg gatgttacgg gggatggcgg tttcgaacac tttcgcgccg
     1321 aaatagccgc gcacatcggc ggtgacctgt tcggagagat tattgcgttt gtccgtcatg
     1381 gtcaggacga tgccttccat ctgcaaggcg ggattcaggc tttgtttcac catatcgatg
     1441 gtgcgcatga gctgggagat gccttccagg gcgaagaatt cggcctggag cgggacgagg
     1501 acggcatctg ccgcgacgag gccgttcagg gtgagcaggc cgaggccggg cgggcaatcg
     1561 atgaagatga tgtcggccgg gcagtccttg gccagggcgt cgcggagcag aaattcgcgg
     1621 cgttcttctt ggccgaattc aagatcggcg ccaatgaggt cggggacggc ggggacgatg
     1681 gtgaggtttt caacaccggt tggccggatg gcggcggtga gggtggtttc gttggcgagc
     1741 agtgcgtagc tgccgccctg gcgggcgtca tggccgatgc caagcccggt gctggcattg
     1801 ccctgcgggt cgatatcgat gagcaggatt ttgaggcccc cgacggcgag ggcggcggcg
     1861 agattgatgg cggtggtggt cttgc
//
LOCUS       DASQCV010000740         2304 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1814452, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000740 DASQCV010000000
VERSION     DASQCV010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1814452"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..485)
                     /locus_tag="VEQ16_11615"
     CDS             complement(<1..485)
                     /locus_tag="VEQ16_11615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64533.1"
                     /translation="MHPDQVDFQQLKERVSIEQVLSHYDLRLKPAGSGTLRGPCPLPT
                     HTSRASTDSFSVQLGRNVWSCHSASCMAARQGRVGGNVLDLVAALERCSLRQAGMCLQ
                     NWFGAAASRLAPMHHAPATPDLTNPPLRFRLHNIDCEHPYLTQRGISLATAHTFGVGL
                     YS"
     gene            complement(510..1475)
                     /locus_tag="VEQ16_11620"
     CDS             complement(510..1475)
                     /locus_tag="VEQ16_11620"
                     /inference="COORDINATES: protein motif:HMM:NF024872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HYP64534.1"
                     /translation="MNPPTVASLAQLLSQQPADPPAGWIEPGLLPPQGILFVGGEPKI
                     GKSLLVANLALALAAGTDRVGFTVPAARRVLVCQFELPVPQFVSRLAAMRCTLGAAAD
                     ENLLVDTRAAGHLLSAPQGLQHFWHAARQAAAEVIVLDPLYSAHDQDENDTRAMAALC
                     QSLLRLRDASKAALIVVHHTRKSIGREEIGSAFRGSSALHAVGDSYLLLRRPAANRAA
                     LELRFQFRYAPPLAPQLLHLEPHSLWFSAAGPAVASHALRHKVEPQDVTQALADLGER
                     ARYSQLRDHLIERTASSKRTAQLAIREARRKGDIVPDNRQYRLPR"
     gene            complement(1472..2227)
                     /gene="istB"
                     /locus_tag="VEQ16_11625"
     CDS             complement(1472..2227)
                     /gene="istB"
                     /locus_tag="VEQ16_11625"
                     /inference="COORDINATES: protein motif:HMM:NF013828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element helper ATPase IstB"
                     /protein_id="HYP64535.1"
                     /translation="MNPNLADQLQNIGLRALPAALDDFVARATKARWSPRQVLEQLAQ
                     AEIAEHSRRSLERRLRFSGIKKFRPMADFEWNWPTKIERDIIERALTLDFLPEARNLV
                     LLGTNGLGKTMIAKNICHAAILAGSSVLFRTAPALLEDLQRQGPEGRRHKLSMYANAG
                     LLCVDEVGYLSFDDKAADLLYEVINRRYERKSLILTTNRHFKEWNEVFPNATCIATLL
                     DRLLHHADVTVIEGKSYRLRESEQEAVVRRRKK"
BASE COUNT          435 a          679 c          767 g          423 t
ORIGIN      
        1 gaatagagtc ctacaccgaa ggtgtgggct gtggccagag agattccgcg ttgagtgaga
       61 tacggatgct cgcagtcgat gttgtgaagc cggaagcgca agggcggatt ggtgaggtct
      121 ggagtggcag gggcatggtg catgggagcc agacgggacg cggcggcgcc aaaccagttt
      181 tgtaagcaca tcccggcctg acggagcgaa cagcgctcca gggcggccac gaggtcgaga
      241 acgtttcctc ccacccggcc ctgacgcgcg gccatgcagg aggcagaatg gcaggaccac
      301 acattccgcc ccagctggac ggaaaagcta tctgtgctgg cgcgggaggt atgggtgggc
      361 agggggcagg gccctcgcag agtccctgat ccggcaggct tgagtcgcaa gtcataatgc
      421 gagaggacct gctcgatgga gacgcgctct ttgagttgtt ggaaatcgac ctggtccggg
      481 tgcatgctcg gctcctgcac tactactgct catcggggca agcggtactg gcggttgtct
      541 ggcacgatgt cgcctttccg gcgcgcctcg cgaatggcca attgcgcggt gcgcttggaa
      601 gatgcagtgc gctcgatgag atggtcgcgc agttgactgt agcgcgcccg ctcgccgagg
      661 tcggccagag cctgggttac atcttggggt tctaccttgt ggcgcagggc atgggaagcc
      721 accgctgggc cggcggcgga aaaccacaac gaatgcggct ccaggtgtag cagctgcggc
      781 gccagcgggg gcgcgtagcg gaactgaaag cgcaactcca gcgcagcccg gttggcagca
      841 ggtcgccgca gcagcaggta gctatcaccg accgcatgca gggccgaaga gccgcggaaa
      901 gcgctaccaa tctcctcgcg gccgatggac ttgcgcgtat ggtgcaccac gatgagcgcg
      961 gctttagagg cgtcgcggag ccgcagcagg ctctggcaca gcgcggccat ggcgcgggtg
     1021 tcattctcgt cctggtcgtg cgccgaatac aagggatcca gtacgatgac ctcggcggcc
     1081 gcctggcgcg cggcatgcca aaagtgctgc agtccttgcg gcgcactgag gagatggccg
     1141 gccgcgcggg tgtccacaag caggttctca tccgcggccg cccctagcgt gcagcgcatg
     1201 gctgccagcc gggaaacaaa ctggggtaca ggcagttcga attggcagac caagacccgg
     1261 cgcgcggcgg ggacggtgaa gccgacccga tcggtgcctg cggccagcgc cagcgccaga
     1321 ttcgctacca acaaactttt gccgatcttt ggttccccgc cgacaaacaa aatgccttgc
     1381 ggcggcaaca gtcctggttc gatccagccg gccggcgggt cggcgggttg ctggctgagc
     1441 aactgggcca atgaagccac ggtgggcgga ttcatttctt cctccgccgc accacagcct
     1501 cctgctcact ttcccggagc cgatagcttt tgccctcgat gaccgtcaca tcggcgtgat
     1561 gcagtagccg atccagcaac gtggcgatgc aagtggcgtt ggggaacacc tcgttccact
     1621 ctttgaagtg ccggttggtg gtcagaatca gcgacttccg ttcatagcgc cggttaatca
     1681 cttcgtagag taagtcagcg gctttatcgt cgaaggacaa gtaaccgacc tcatccacgc
     1741 acagcagtcc ggcattggcg tacatcgaca gcttgtgtcg gcggccttcc gggccttgcc
     1801 gctgcagatc ttccagtaac gcgggcgcgg tccgaaacag aactgaactg cccgccaata
     1861 tagccgcatg acagatattt ttggcaatca tggtcttgcc taagccattg gtccccagca
     1921 gcaccagatt gcgcgcttcc gggaggaagt ccaaagtgag cgcgcgttca atgatgtcgc
     1981 gttcgatctt agtgggccag ttccactcga agtcggccat aggcctgaat ttcttgatgc
     2041 cggagaagcg cagacgccgt tccaggctgc gccgcgagtg ctcggcgatt tcggcctgcg
     2101 ccaactgttc taacacctgg cgtggagacc agcgggcctt agtggcccgc gccacgaagt
     2161 cgtcgagtgc ggcgggcaaa gcgcggagtc ctatgttttg gagttgatcg gccagattag
     2221 gattcatggg agtcctcctc gtcgtcctcg gactggcggg cgagggcatc gtaggactcc
     2281 agatcctgcg gccgcacctc gatc
//
LOCUS       DASQCV010000741         2507 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2310620, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000741 DASQCV010000000
VERSION     DASQCV010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2310620"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            147..803
                     /locus_tag="VEQ16_11630"
     CDS             147..803
                     /locus_tag="VEQ16_11630"
                     /inference="COORDINATES: protein motif:HMM:NF015961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HYP64536.1"
                     /translation="MKSILNSAPAQRAITWVLTRYVRLVMATQSWRVEGEQNIRLLAG
                     GNVFIIVLWHETLPAIPIMLRKARAMGVTNSGVVLASRHRNGQLIGNIMVNLGLEQVA
                     GSTSKGGASGLRGLARALEAGKHVILTPDGPRGPRRVPAPGVAQLAALTGAQVLPCAA
                     ATSRAITLNSWDKMRLALPFGRGVLVAAPPITVPRENWEASLPLIQAGLNAALERALS
                     "
     gene            800..2020
                     /locus_tag="VEQ16_11635"
     CDS             800..2020
                     /locus_tag="VEQ16_11635"
                     /EC_number="2.4.99.12"
                     /EC_number="2.4.99.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HYP64537.1"
                     /translation="MMLRLYAAAAGFAQPAFRRMLAKRAATGKEIPARLAEREGISSL
                     PRPDGKLAWVHAASVGETMSVLPVLHALAGQGAKILLTTGTVTSARLAESRLPPGAIH
                     QFVPLDVPAWVERFISHWQPDVAVFLESELWPNLLRGCDAHGIPRLLINARMSDKSAR
                     NWRRAPGTARALLGGFAAVLAQSATDAAKFRSLSVEVQEWGNLKFFTAPLPVDQAALD
                     TLKAQLPGPAWLAASTHEGEEEIIATAHENLLPQFPTLITIIVPRHPERGEAVAALCG
                     NAPRRSLGQPPIPGKIYVADTLGELGLFFRATPFAFIGNSLVGFGGHNIIEPALLARP
                     ALSGPHLENFKEPAEILRDAGMLAEVTDAASLAAAAASWLRACPDGAIAAACFASAAQ
                     LPLRVAGLIMGQIP"
     gene            2017..>2507
                     /locus_tag="VEQ16_11640"
     CDS             2017..>2507
                     /locus_tag="VEQ16_11640"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HYP64538.1"
                     /translation="MKAPSFWSERGLPAQALRPFSFVTRLATARRVRRPGVSLGIKTI
                     CVGNPGVGGAGKTMVVLDILTRLPGHPYALTRGYGGKLKGPVLVDRGQHDARDVGDEA
                     MLLAARAPTVVARDRAAGARLALAEGASAIVMDDGLQNPSVKKTLSLLVIDGGYGFGN
                     GFLL"
BASE COUNT          384 a          984 c          740 g          399 t
ORIGIN      
        1 cgcctgtcca tcatcatcaa tgccggcacg gcggacgaaa tcacccgcct gaaggacgtg
       61 gtggaccggc atctgctgcg cttcgccttc cgcgaggatt tcagcatcaa ctggcagtaa
      121 agcgcgttcg gtgctaccgg cgcggcgtga agagcatcct caattccgcg cccgcgcaac
      181 gcgccatcac ctgggtccta acccgctatg tcaggctggt gatggcaacc caaagctggc
      241 gcgtcgaggg cgagcagaat atccgcctgc tcgcgggcgg caatgtcttc atcattgtgc
      301 tctggcacga gaccctgccc gccattccca tcatgctgcg caaggcgcgg gcaatggggg
      361 tgaccaattc cggcgtggtg ctggccagcc gccaccgcaa cggtcagctc atcggcaata
      421 tcatggtcaa tctcgggctg gagcaggtgg cagggtccac cagcaaaggc ggcgcctccg
      481 gcctgcgcgg gctggcgagg gccttggagg cgggcaagca tgttatcctc acgccggacg
      541 gcccgcgcgg cccgcgccgc gtgcccgccc ccggcgtggc gcagctcgcc gccctcaccg
      601 gcgcgcaggt gctgccctgc gccgccgcca cctcgcgcgc catcaccctc aatagctggg
      661 acaagatgcg cctcgctctg cccttcgggc gcggcgtgct ggtggccgcc ccccccatca
      721 cggtgccgcg cgagaactgg gaagccagcc tgccgctcat ccaggcgggc ctcaacgcgg
      781 cgctggagcg cgccctctca tgatgctgcg cctctacgcc gccgccgccg gcttcgccca
      841 gcccgccttc cgccgcatgc tcgccaagcg cgcggccacg ggcaaggaaa tcccagcccg
      901 cctggccgag cgcgaaggca tttcgtctct accccgcccc gatggcaaac tcgcctgggt
      961 ccatgccgcc agcgtcggcg agacgatgag cgtgctcccc gtgctgcacg ccctcgccgg
     1021 ccagggtgca aaaatcctgc tcaccaccgg taccgtcacc tccgccaggc ttgccgaatc
     1081 ccgtctgccc cccggcgcca tccaccaatt cgtgccgctc gacgttcccg cctgggtgga
     1141 gcgttttatc tcccactggc agccggacgt cgcggttttc ctggaaagcg agctctggcc
     1201 caacctgctg cgcggctgcg atgcgcacgg catcccgcgt ctgctcatca atgcccgcat
     1261 gtcggacaaa tccgcccgca actggcgccg cgcccccggt accgcccgcg ccttgctcgg
     1321 cggttttgcc gccgtcctcg cgcaatcagc cacggacgca gcaaaattcc gctcgctcag
     1381 cgtcgaagtg caggaatggg gcaacctcaa attcttcacc gccccactac cggtggacca
     1441 agcggccctg gacacgctta aggcgcaact ccccggcccc gcctggctcg ccgccagcac
     1501 ccatgagggc gaagaggaaa tcatcgccac cgcgcacgaa aacctcctgc cgcaattccc
     1561 caccctcatc accatcatcg tcccgcgcca ccccgagcgc ggcgaagccg ttgccgccct
     1621 gtgcggcaac gccccccgcc gcagcctcgg ccaaccgccc atccccggca aaatctacgt
     1681 cgccgacacg ctgggtgagc taggcctgtt cttccgcgcc acgcccttcg ccttcatcgg
     1741 caattcactc gtcggcttcg gcggccacaa catcatcgag cccgccctcc tcgcccgccc
     1801 tgcgctcagc ggcccgcatc tcgaaaactt caaggaacca gcagaaattt tacgagatgc
     1861 cgggatgttg gcggaggtga cggacgccgc ctctttggcc gccgccgccg catcatggct
     1921 gcgtgcctgc cccgacggcg ccatcgctgc cgcctgtttc gccagcgcgg cgcaattgcc
     1981 tcttcgcgtc gccgggctca tcatgggcca gataccatga aagccccgtc cttttggtcc
     2041 gagcgcggcc tccccgccca ggcgctgcgc cccttcagct tcgtcacccg cctcgccacc
     2101 gcgcggcggg tacgccggcc cggcgtgtcg ctcggcatca agaccatctg cgtcggcaat
     2161 cccggcgtcg gcggcgccgg caaaaccatg gtggtgctcg acatcctcac ccgcctgccc
     2221 ggccacccct atgccctcac gcgcggctat ggcggcaagc tgaaaggtcc ggtcctggtc
     2281 gatcgcggcc agcatgacgc gcgggatgtg ggcgacgaag ccatgctgct cgccgcccgc
     2341 gcccccacgg tggtggcgcg cgaccgcgcc gccggcgccc gcctcgctct ggccgaaggc
     2401 gcttccgcca tcgtcatgga tgacgggctg caaaacccct ccgtgaagaa aaccctctcg
     2461 ctcctcgtca tcgatggcgg ctacggcttc ggcaacggtt ttctgct
//
LOCUS       DASQCV010000742         2930 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2973072, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000742 DASQCV010000000
VERSION     DASQCV010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2930
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2973072"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..345)
                     /locus_tag="VEQ16_11645"
     CDS             complement(<1..345)
                     /locus_tag="VEQ16_11645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64539.1"
                     /translation="MPERPPLSSFEVQRPPLSSFEASEPPEQSLLESVGESAGKAAKA
                     FPGSVKQAGEDLWNLVMHGDKVIAHMREKGFSGVASEFKDDILEHYGSLEKAKHTFET
                     DPFRFLTDVSLPL"
     gene            complement(345..2135)
                     /locus_tag="VEQ16_11650"
     CDS             complement(345..2135)
                     /locus_tag="VEQ16_11650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64540.1"
                     /translation="MSFLMGLGGFGSGLSQGMTQGLGTLDKILDYQAEARLAQDPAFA
                     AAISEQLGTLGGLGSIQQFLSQQPSPGGQSGAASQAAQPPPAAPQAPGTMAGAFPPMQ
                     TAMQMGQPAVAPGQPGGAQRQPFPLAVARDPVHQELESTPGLKAQLDRITTAEVGRDP
                     QMQKMFQETVINRAAADKIPLAKILSDRNYFPPATFLRAQREGGTGQGVSPEMWASTA
                     PSNLTGYGTGNASIDPRTGRPVGFAGGPQTAMRGGEQYGIEGRNLPWARSMGYGGPER
                     TALGRAGPQGPGGQAPVPPTVDHGELAKATTNLREGKPMPMNQLAQLIERNASDASPL
                     VKFRMMKKALGLMNSAGQTQFNQAMQIMQFRQREQQHEDVLKHQRTMEELAAGRQDPE
                     KQAALAAAKKGATAIIQSRQRELSTLNTQLGAIEGQTQNMLGNIDRLAAIAKEVQITG
                     SMPIDTWINNIKAKFGNTNALMYKAQLDTTRLDVSRVLNNPTGNAALTEGARKEAQAY
                     LNGVLTPKTIAAFKELYRVDAKIKRESLTNQIKAAEKDIEEYGGHRTTEPAETTAGQA
                     APATSRKIDREKAKAAGWSDAEIDAYERGQ"
     gene            complement(2132..>2930)
                     /locus_tag="VEQ16_11655"
     CDS             complement(2132..>2930)
                     /locus_tag="VEQ16_11655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64541.1"
                     /translation="LAGLQALNQLYPTAANLQGTAAPLFMQSAGMPWQAGQTIGGQAL
                     NTLGGLGGFGTNAANIPQIQLQDYYNLMGWGTGAQNQAFQQAQQANFLDPMAIAASQN
                     QFNQNLFQDQLQRAQASAAETAGAWGGIGSLVGNVGMLGMGLGSKGFNLFGSPQQTST
                     AQGLQYGGEMPAEGAVVGEGGPEYFKPKVPGTIVPNPQTQAQMGQMPGTGWPGGGSGM
                     QMAGGGDGIWAPFGQPNIPPESGMGGLGGIGTFKPQFGRGWQYGGAA"
BASE COUNT          458 a          959 c          890 g          623 t
ORIGIN      
        1 gagcggcaac gacacatcgg tcagaaagcg gaacggatcg gtctcaaacg tatgcttggc
       61 cttctcgagc gagccgtaat gctcgaggat gtcatccttg aactcgctgg cgaccccgct
      121 gaaccccttc tcacgcatgt gcgcgatgac cttgtcaccg tgcatgacga ggttccacag
      181 atcttcaccc gcctgcttga cgctgccggg aaaagctttc gcggctttgc cagcactttc
      241 gccgacgctc tccagcaagc tctgctcagg cggctcggat gcctcaaagc tggacagcgg
      301 agggcgctga acctcgaagc ttgaaagcgg cggacgctcg ggcatcactg cccccgttca
      361 taagcgtcaa tttctgcgtc gctccagccg gccgctttcg ccttttcacg atcgatctta
      421 cgcgatgttg ccggcgctgc ctgaccggcg gttgtctctg ccggttctgt cgtacgatgt
      481 ccgccgtatt cctcgatgtc tttttctgcg gccttgatct ggttcgttaa actttcgcgt
      541 ttgatcttgg cgtcgaccct gtacaattcc ttgaacgctg caatcgtctt tggcgtcagc
      601 acgccgttca gataagcctg cgcttccttg cgcgcgcctt ctgtcagcgc cgcattgcca
      661 gtcggattgt tgagcacgcg gctcacatcg agacgcgtcg tatcaagctg cgccttgtac
      721 atgagcgcgt tggtgttacc aaactttgcc ttaatattat tgatccaagt atcaattggc
      781 atgctgcccg tgatctgaac ctctttggca atggctgcca accggtctat gttgcccagc
      841 atattctggg tctgtccctc aatcgcgccg agctgcgtgt tgagcgtgga cagctcgcgc
      901 tggcgcgact ggatgattgc ggttgccccc ttctttgctg cagcgagtgc cgcctgtttc
      961 tcagggtctt gtcggccagc cgcaagctcc tccatcgtcc gttgatgctt gagcacgtcc
     1021 tcgtgctgct gctctctctg ccggaactgc atgatctgca tcgcctgatt gaattgcgtc
     1081 tgtccggccg agttcatcag accgagcgcc ttcttcatca tgcggaactt gaccaatgga
     1141 ctggcatcgg aagcgttgcg ctcgatgagc tgcgcgagct ggttcatggg cattggcttg
     1201 ccttcgcgca ggttggtcgt cgccttggcc agctcgccgt gatcgacagt cggcggcacg
     1261 ggcgcttgtc cgcctggccc ctgcgggccg gcgcggccga gcgcggtgcg ctcgggtccg
     1321 ccgtagccca tgctgcgcgc ccacggcaga ttgcgcccct cgataccgta ctgctcaccg
     1381 ccgcgcatgg cggtctgcgg cccgccggcg aagcccaccg gccgcccggt acgcgggtcg
     1441 atggacgcat tgccggtgcc gtaaccggtc aggttggacg gcgcggtcga tgcccacatt
     1501 tccggcgaaa cgccttgtcc ggtgccgccc tcacgctgcg cgcgcaagaa ggttgccggg
     1561 gggaaatagt tacgatcgga aagaattttg gctagcggaa ttttatccgc tgcggcgcgg
     1621 ttgatgaccg tctcctggaa catcttctgc atctgcggat cgcggccgac ctcggcggtc
     1681 gtgatgcgat cgagctgtgc tttgagcccc ggcgtgctct ccagctcctg gtgaacggga
     1741 tcgcgtgcca cggcaagtgg aaacggctgc cgctgcgcac caccgggctg tccaggcgcg
     1801 accgcaggct gccccatctg cattgcggtc tgcattggcg ggaacgcgcc ggccatggtg
     1861 ccgggagcct gcggggcggc tggtggcggc tgcgcagcct gcgaggcagc accggactgg
     1921 ccgccgggag agggctgctg gctgaggaac tgctggatcg aacccaggcc gccgagcgtg
     1981 ccgagctgct cggagatcgc ggccgcaaaa gccgggtctt gtgcgagccg tgcttcggcc
     2041 tggtagtcga gaattttgtc gagcgtgccc agcccctgcg tcatgccctg cgacaggccg
     2101 gagccaaaac cgccgagccc catcaggaag ctcatgccgc gcccccgtac tgccagccgc
     2161 ggccgaattg cggcttgaag gtaccgatgc cgccgagccc gcccatcccg ctctcaggcg
     2221 ggatattcgg ctgcccgaac ggagcccaga tgccatcgcc gccgccggcc atctgcatgc
     2281 cgctgccgcc accaggccag cccgtgccgg gcatctgccc catctgcgcc tgcgtctgcg
     2341 gattgggaac gatggtgccg ggcaccttcg gcttgaaata ctctggtccg ccctcgccga
     2401 cgaccgcgcc ttctgcaggc atctcgccgc cgtattgcaa gccttgcgcc gtgctcgtct
     2461 gctgcggtga accaaaaagg ttgaaccctt ttgagcctag ccccataccg agcatgccga
     2521 cattaccaac cagcgagcca ataccgcccc aggctccagc agtctcggcg gctgacgcct
     2581 gcgcccgctg cagctgatct tgaaacaggt tctgattgaa ttgattttgc gaggcggcaa
     2641 tcgccatcgg gtcaagaaaa ttcgcttgct gcgcttgttg aaatgcttga ttctgcgctc
     2701 ccgtgcccca gcccatcagg ttgtagtagt cctgcaattg tatctgcggg atattggctg
     2761 cattcgtgcc aaacccgccg agacctccaa gcgtgttgag cgcctgaccg ccgatcgtct
     2821 gccccgcctg ccacggcatg cctgcgcttt gcataaacag cggcgcagcc gttccctgca
     2881 gattggccgc ggtcggatag agctggttga gcgcctgcag gcccgcgagc
//
LOCUS       DASQCV010000743         2215 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2642925, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000743 DASQCV010000000
VERSION     DASQCV010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2642925"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..636
                     /locus_tag="VEQ16_11660"
     CDS             <1..636
                     /locus_tag="VEQ16_11660"
                     /inference="COORDINATES: protein motif:HMM:NF016843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPP family protein"
                     /protein_id="HYP64542.1"
                     /translation="HAERLRASLGVFLGIALTGLVSTAWLGPAGDLPLLVAPMGASAV
                     LLFGVPASPLAQPWPIMGGNLIAALIGVTAAHWFASPLAAACLAVGCTFAATSLLRCV
                     HPPSGAVALTAVLGGAHITALGYGFALVPVGLNSLLLVVAAIAYNNATGRSYPHHAHE
                     PVHPHPPVSLLSFDPADLDEVLADYGETIDISRDDLEALFRELLGRAQRLT"
     gene            complement(739..1632)
                     /locus_tag="VEQ16_11665"
     CDS             complement(739..1632)
                     /locus_tag="VEQ16_11665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012975244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HYP64543.1"
                     /translation="MNKTEPDWNLYRSFLAVLREKSLSAASRALNLTQPTLARHIDAL
                     EGALGFELFIRSQHGLAPTEAALELAPYAESLEASTAAILRTASGLGSAVKGTVRITA
                     SEIVGAEILPPILTGLRRQHPALEFELILSNAVENLLRRDADIAVRMIEPVQEALVVR
                     KLGGISLGLHAHKDYLAYAGVPARLEDLAAHSLIGFDRETPALRAMRSRAPGGDAMHF
                     AFRADSDIAQWRAIKAGFGIGVCQLGLAKQEPGLVRLLPRAFELKLGVWLAMHQNLRA
                     TPRCRATFDGLADGLTKYMRL"
     gene            1724..>2215
                     /locus_tag="VEQ16_11670"
     CDS             1724..>2215
                     /locus_tag="VEQ16_11670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014197842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP64544.1"
                     /translation="MTSHPTALVLGASGGIGGEVARRLAARGWIVRALHRDPSRLSSA
                     DKAENFTWLRGDAMSAADVAAAAAGASVIVHAVNPPGYRHWGKLVLPMLENTVAAARA
                     AGARIILPGTVYNFGPGAFPAPHETSPQHPLTVKGGIRVEMERRLRAAADAGTPVLIV
                     RAGD"
BASE COUNT          376 a          692 c          696 g          451 t
ORIGIN      
        1 catgccgagc gtctgcgcgc cagccttggg gtctttctgg gcatcgcgct caccggcctc
       61 gtcagcacgg cgtggctggg gccggcgggg gatttgccat tgctggtggc gccgatgggc
      121 gcgtccgcag tgctgctgtt cggcgtgccg gccagtccgc tggcccagcc ctggccgatt
      181 atgggcggca atctcatcgc ggcgttgatc ggcgtcacgg cggcgcattg gtttgcctca
      241 ccacttgccg cggcgtgctt ggcagtgggg tgcaccttcg ccgccacgtc tctgctgcgc
      301 tgcgtgcatc cgccaagcgg cgccgttgcc ctcaccgccg tgctgggcgg cgctcacatc
      361 acggcgcttg gctacgggtt tgcgctggtg ccggtcgggc tcaattcgct gctgctggtg
      421 gtggcggcga tagcctataa caacgccacg ggccgttcct acccgcacca tgcgcatgag
      481 ccagtgcatc cgcatccgcc ggtatcgctg ctatccttcg atcctgccga tctcgacgaa
      541 gtgctggctg attatgggga aaccatcgat atcagccgcg acgaccttga agccttgttc
      601 cgggagttgc ttgggcgcgc gcaacgcctc acctagccca gctgttagag ggctctggtc
      661 aaagcgtgat cgcgtataaa gccgaaacgc gatgataggt tgcgcccaaa tatattctgt
      721 tttcaggatg attgacggtc agagtctcat atattttgtg aggccatccg ccagcccgtc
      781 gaatgtcgcg cggcatcggg gcgtggcacg caggttttga tgcatggcga gccagacgcc
      841 gagcttaagt tcgaacgccc ttggcagcag gcgtaccagg ccgggttcct gctttgccag
      901 ccccagctgg cagacgccga tgccaaagcc tgccttaatg gcgcgccatt gcgcgatatc
      961 actatcggca cggaaggcaa aatgcatggc atcgccgccg ggcgcgcggc tgcgcatggc
     1021 ccggagcgcc ggcgtctcgc ggtcgaagcc gatcaggctg tgcgccgcta aatcttccaa
     1081 acgggccggt acgcctgcat aggcaagata gtccttatgc gcgtgcagcc ccaggcttat
     1141 gccgcctagt ttcctgacga caagggcctc ttgcacgggt tcgatcatgc gcactgcgat
     1201 atctgcatcg cggcggagca ggttttccac cgcattggaa agaatgagct caaattccag
     1261 cgccggatgt tgccgccgca ggccggtgag tatgggcggt aaaatctcgg caccgacgat
     1321 ctcgctggca gtgatgcgta ccgtgccttt gaccgcgctt cccaatccgg aggctgtacg
     1381 caatatggcg gccgtgctgg cttccaggct ttccgcatag ggtgcgagtt ccaaggctgc
     1441 ttcggtcggc gcgaggccat gttgggagcg gatgaataat tcgaacccca gtgccccctc
     1501 cagcgcgtcg atatgccgcg ccaaggtggg ttgcgtgagg ttcaaggcgc gtgatgccgc
     1561 cgagagcgat ttctcccgca agacggccaa gaagctgcga taaagattcc aatccggctc
     1621 ggtcttgttc atctatttta gtatagatta tgaacatatt taagcaattc cgtatagtat
     1681 gaaaatcctt cagtttggtc ccggccaact caaggagacc aacatgacat cccatccaac
     1741 agcactcgtg cttggcgcga gcggcggcat cggcggagaa gtggcaaggc gccttgccgc
     1801 aagaggctgg atcgtccgtg ccctgcaccg cgatccatcc cggctgtcca gcgctgacaa
     1861 ggcggagaat ttcacctggc tgcggggcga tgccatgtcc gcggctgatg tcgccgccgc
     1921 tgccgcgggc gcctcggtca ttgttcacgc cgtcaatccg cccggctatc gccattgggg
     1981 caagctggtg ctgccaatgc tggaaaatac ggtcgccgcc gcccgcgcgg caggtgcgcg
     2041 catcattttg cccggtacgg tttataattt cggccccggc gcattccccg caccgcacga
     2101 gacatcgccg caacatcccc tcaccgttaa aggcggcatt cgcgtggaga tggagcgccg
     2161 gctgcgcgct gctgccgatg cgggcacgcc cgtcctgatc gtacgcgccg gcgat
//
LOCUS       DASQCV010000744         3978 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2146091, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000744 DASQCV010000000
VERSION     DASQCV010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3978
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2146091"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1097
                     /gene="recF"
                     /locus_tag="VEQ16_11675"
     CDS             <1..1097
                     /gene="recF"
                     /locus_tag="VEQ16_11675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015073959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HYP64545.1"
                     /translation="LTRLTLTDFRSYPALRFTPEARVNVFAGPNGTGKTNLLEAVSLL
                     VPGRGLRGAKFSELARRGPDASGSWAVAASFADGLEIGTGMADSAPDRREFRLNGSKP
                     RSQAEIGELLAAVWLTPQMDRLFTDTASGRRKFLDRLVLALDPAHAREIAAFEAASAQ
                     RNRLLAENPDPTWLAGLEDSMARHGVAATAARAALLLRLNAAIEAGAADPFPRVHLGL
                     DCAIAARLAEAPAIEVEDHLRAAYVSARRQDAAQKTASIGPQKADFLISDLESGRLAA
                     LSSTGQQKAMLLGIVLGHAAMIATIRGQAPLLLLDEPLVHLDSTRRAALFAALNASNT
                     AAYLTGTDREQFEGLNAACYSIRDGSIEPA"
     gene            1094..1909
                     /locus_tag="VEQ16_11680"
     CDS             1094..1909
                     /locus_tag="VEQ16_11680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007002654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HYP64546.1"
                     /translation="MKILVLGDLMGRAGREAAIKHIPELRKSLKLDFVGVNAENASHG
                     FGLGPDMADALFAAGADVITLGNHAWDRREIIPYIAREKRLLRPLNFPPGTPGLGAHL
                     TTLPDGRKVLLAQAMGRLFMEPLDCPFRATEELLSRHRLGVTVHAILLDIHAEATSEK
                     MAYAHAFDGRVSGVTGTHTHVPTADHQVLPGGTAYATDLGMCGDYDSVIGMQKEPATG
                     RFIRKMPGDRLAPAEGAATLCGAFIETNDATGLARRIEPVRLGGRLAPALPSL"
     gene            1909..3081
                     /locus_tag="VEQ16_11685"
     CDS             1909..3081
                     /locus_tag="VEQ16_11685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015073191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HYP64547.1"
                     /translation="MPDFDALWSAILTRLEGEKRRRRLRDVTRLPGGRIKLGDGRELL
                     DFASNDYLGLSFHPELIKKSCEYTATQGTGAGASRLVAGNLAPFSEIEAKLAAGKGAE
                     AALLFVSGVQANLTILPALLDAKTLGAEPLVYADRLNHASLIQGCIGAGVRQNRFRHN
                     DLAHLEELLRRDEALGRPRFIITESVFSMDGDCADISALSAIAEKYGAFLYVDEAHAT
                     GVLGENGFGLVKGGRNILAMGTFSKGLGGFGAYVACSGVLREYLVNRCGGVIYATALP
                     PAVLGAMQAAVDLLPSLDTERVYLQALAEDFRNRLRQAGLDTGASRTQIVPVILGDEA
                     KVLEVAAGLEEDGFYVGAIRPPTVPAGTSRLRISLSASHESKNVAALADAIIRRAR"
     gene            3078..3794
                     /locus_tag="VEQ16_11690"
     CDS             3078..3794
                     /locus_tag="VEQ16_11690"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HYP64548.1"
                     /translation="MSGFEAQAGIYDSVALVQAEVAARLAARLDGSPRRILEIGCGTG
                     LLSAHLAQRFPGAKLVLTDLAPAMLAQAQARLGAGANYLVMDGQWPDAALGQFDLIAS
                     SLVFQWFDDLPGALARLKDMLAPGGVLQFATLGRESFAEWRQAHEELGLVCGLRDYVG
                     AEEFPWPPGLEGRIAAEMIEERHADGRAFVRGMKMLGAAQSPVRHRPLGAGRFRVLLD
                     RFSGGFTARYQILFGTAWRP"
BASE COUNT          609 a         1325 c         1310 g          734 t
ORIGIN      
        1 tgctcacccg cctcaccctc accgatttcc gctcctaccc ggccctgcgc ttcacgccgg
       61 aggcgcgcgt caacgtgttc gccggcccca acggcactgg caaaaccaat ctgctggaag
      121 ccgtctcgct cctggtcccc ggccgcggcc tgcgcggggc aaaattctcc gagctcgccc
      181 ggcgcggccc ggacgcctcc ggcagctggg ccgtcgccgc cagcttcgcg gacgggctgg
      241 aaattggcac cggcatggcc gattccgcgc ccgaccgccg cgaattccgc ctcaacggat
      301 caaaaccgcg cagccaggcc gaaatcggcg aattgctcgc cgccgtctgg ctcaccccgc
      361 aaatggaccg gctgtttacg gacaccgcct ccggccgccg caaattcctc gaccggctgg
      421 tcctcgcttt ggaccccgcc catgcccgcg aaatcgccgc cttcgaggcc gcctccgccc
      481 agcgtaaccg cttgctcgcg gaaaacccgg accccacctg gctcgccgga ctggaagatt
      541 ccatggcccg ccacggcgtc gccgccaccg ccgcccgcgc tgccctgctg ctccggctca
      601 atgccgccat cgaggccggc gccgccgacc cgttcccccg cgtgcatctc gggctggact
      661 gcgccattgc cgcccgcctg gcggaggccc ccgccatcga ggtggaagac catctccgcg
      721 ccgcctacgt gagcgcccgc cgccaggatg cggcgcagaa aaccgcctcc atcggtccgc
      781 aaaaggccga tttcctcatt tccgacctgg aatccggccg ccttgccgcg ctttcctcca
      841 ccggccagca gaaagccatg ctgctcggca tcgtgctcgg ccatgccgcg atgatcgcca
      901 caatccgcgg tcaggccccg ctgctgctgc tcgacgagcc gctggttcac ctcgattcca
      961 cccgccgcgc cgccctcttc gccgcgctga atgccagcaa caccgccgcc tatctcaccg
     1021 gcacggaccg tgagcagttc gaagggctga atgcggcctg ttacagcatc cgcgatggct
     1081 ctatagagcc cgcatgaaaa ttctggtcct tggcgacctt atgggccgcg ccggccgcga
     1141 ggctgctatc aaacatatcc ccgagctgcg taaatcgctg aaactcgatt tcgtgggtgt
     1201 gaacgctgaa aacgcatcgc acggcttcgg cctgggcccg gacatggccg acgccctctt
     1261 cgccgccggc gccgatgtga tcacgctggg caaccatgcc tgggaccggc gcgagatcat
     1321 cccctatatc gcgcgcgaaa aacgcctgct gcgcccgctg aatttcccac ccggcacgcc
     1381 cggcctgggc gcgcatctca ccacactgcc cgacggccgc aaggtgctgc tggcccaggc
     1441 catgggacgg ctcttcatgg aacctttgga ctgccccttc cgcgccaccg aggagctgct
     1501 ctcccgccac cggctcggcg tcaccgtgca tgccatcctg ctcgacatcc atgccgaggc
     1561 cacctccgag aaaatggcct acgcccacgc cttcgatggc cgcgtgtcag gcgtcaccgg
     1621 cacccacacc catgtcccca ccgccgacca ccaggtgctc cccggcggca ccgcctatgc
     1681 caccgacctc ggcatgtgcg gtgattatga ttccgtcatc ggcatgcaga aggagccagc
     1741 caccggccgc ttcatccgca aaatgcccgg cgaccggctg gccccggcgg aaggcgccgc
     1801 cacgctctgc ggcgccttca tcgagacaaa tgacgccacc ggcctggccc gccgcattga
     1861 acctgtccgc ctcggcggcc gcctggcgcc ggccctgccg tcactctgat gccggatttc
     1921 gatgcgctct ggtccgccat cctgacgcgc ctggagggtg aaaagcgccg ccgccgtctg
     1981 cgtgatgtca cccggctgcc cggcgggcgg ataaaacttg gcgatggacg ggagctgctg
     2041 gatttcgctt cgaatgatta cctgggctta tcattccacc ctgaattgat aaaaaaatct
     2101 tgtgaatata ctgccaccca gggcacgggg gccggagctt cacgtctggt ggcggggaat
     2161 ttggcgccgt tttcggagat cgaggcgaaa ttggcggcgg ggaagggggc ggaggcggct
     2221 ttgctgttcg tctctggcgt gcaggccaac ctgaccattc tgccggcgct gctggatgcc
     2281 aaaacgctgg gggcggagcc gctggtttat gcggaccggt tgaaccatgc cagcctgatc
     2341 cagggctgca tcggcgccgg ggtgcggcag aaccggttcc ggcataacga cctcgcgcat
     2401 ctggaagagt tgttgcgccg ggacgaggcg ctcggccggc cgcgcttcat tattacggaa
     2461 tccgtcttca gcatggatgg ggattgtgcc gatatttccg cgctttcggc catagctgaa
     2521 aaatacgggg cgtttctcta tgtggatgaa gcccatgcca caggcgtgct gggggagaac
     2581 gggttcgggc tggtgaaagg cggcaggaat attctggcca tgggcacctt cagcaagggg
     2641 ctgggcgggt tcggcgccta tgtggcttgt tccggcgttt tgcgcgaata tcttgtcaat
     2701 cgttgcggcg gggtgattta cgctaccgcc ttgccgcccg ccgtgctggg ggcgatgcag
     2761 gcggccgtcg atttgctccc gagcttggac acggagcgcg tgtatttgca ggctctggca
     2821 gaagattttc gaaaccgcct gcggcaggcg gggctggata cgggggcgtc ccgcacgcag
     2881 atcgtgccgg tgattctggg cgatgaggcg aaggttctgg aggttgcggc ggggctggaa
     2941 gaggacgggt tctacgtggg cgccatccgc ccccccaccg tgccggcggg cacgagccgg
     3001 ctgcgcattt cgctgtcagc ttcgcatgag agcaaaaatg tcgcggcgct ggcggatgcc
     3061 atcatcaggc gggcgcgatg agcgggttcg aggcgcaggc cgggatttat gattcggtgg
     3121 ccctggtgca ggctgaggtg gcggcgcggc tggcggcaag gttggacggg tcgccccggc
     3181 gcatattgga aatcggctgc ggtaccgggc tgttgagcgc gcatctggcc cagcgttttc
     3241 ccggcgcaaa actggtgctg acggaccttg cccccgccat gctggcgcag gcgcaggcgc
     3301 ggctgggggc gggcgcaaat tatctcgtga tggatgggca atggcccgat gccgcgctgg
     3361 ggcagttcga cctgatcgcc tccagcctgg tgtttcaatg gttcgacgat ctgccgggcg
     3421 cgctggcgcg cctcaaggac atgctggcgc cgggcggggt tctgcaattc gccacgctcg
     3481 ggcgcgagag ttttgccgaa tggcggcagg cgcatgagga gctggggctc gtctgcggat
     3541 tgcgtgatta tgtgggcgct gaggaatttc cctggccgcc cggccttgaa ggacggattg
     3601 ccgccgagat gatcgaggag cgccacgcgg atgggcgggc tttcgtgcgc ggcatgaaaa
     3661 tgttgggggc ggcgcaatcc ccggtccggc acaggccgtt gggggcgggg cggttccgcg
     3721 ttttgctgga ccggttttcc ggcgggttta cagcgcgtta ccagatatta ttcggcacgg
     3781 catggcggcc atgaaggctt gggggtgggc atgtcatgga ggctgcccta tctggtccca
     3841 tgctgttttg gttgccgatc tttttcatat tcgttctgtt tgcggtgtcg tctttcccgg
     3901 tagcatcgcg catgcggaac tggctggtgg gatgctggcg cgcgcatgtg gccggtgtgc
     3961 tgacgcgcga attgcgcc
//
LOCUS       DASQCV010000745         2474 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1978208, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000745 DASQCV010000000
VERSION     DASQCV010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1978208"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2474)
                     /locus_tag="VEQ16_11695"
     CDS             complement(<1..>2474)
                     /locus_tag="VEQ16_11695"
                     /inference="COORDINATES: protein motif:HMM:NF023802.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HYP64549.1"
                     /translation="IYDKGLYLQAYQQAETISPLPRWTGTRARILAGRLAGNLGGPRL
                     GEWHFIRAWRTDRSDPEASWFYGRYLLDAHGPWKALQFVKSQGTFPEASIEIRSYWLS
                     LHAMVYGRVRDFAAAEKWLAQAESLGWDHPWIRLERAALCSLEDRHEEAMAAAQTALK
                     VRPWYRPAVQWLAHFHVQKEQDEEAVKLLSEAARRMESSAIWSQLANLQMELGRYEEA
                     SRSLEEFARLAPLLDKGMAEWLAARRSDAAYYCGDIEQSREEAKKVKGRFFEAQVKRL
                     ENPPADGKRVCLPVGFVRQHFQTCAPATLAAICRFWEMPGDHLEMAAAITYAGTPNHS
                     ERQWAMDSSWFTREFTVTWDSAVAVLDQGIPFTLTTPEVSSSHLQAVIGYDSIRGTLI
                     IRDPGERHQSEFLAEGLAERYAASGPRGMALLPLKDKEKLASLNLPDSDLYDHMYQLE
                     KALETHDRAKAEQVCRELEAKAGKHRLAYLARRTLAVYDSDTPSILAVTEKQLELFPE
                     DLRWQLSKVNCLRTMARRDEYLALLKKLSEQKISDPACWQQYAQELADDAREHPRALH
                     LLRRSLRYNPGDARTFHCLARIHWDRRQFPEAFDLYRIAACLEETDEHLARSYFQAAS
                     TLGKTEEALEFLEQRFERFGSKSGQPARTLSWAYFQLERTREGFEVLEKALSRRPDDA
                     DLLLYAIDQRIQFGRFTQARELLIQAKGHSQKTAWLRSTANLAAAQGDLEIARKVWAK
                     VLEVEPLGDDAHAAYARLLAETKGRAAALKHLHKTCDRFPYNFQLKELLVEWLHEDGP
                     EAVEPVVRKLIDIHPANAWARRELAL"
BASE COUNT          410 a          788 c          786 g          490 t
ORIGIN      
        1 cagggccagc tcgcggcggg cccaggcatt ggccggatga atgtcgatca gtttgcggac
       61 caccggctcg accgcttcgg gcccgtcctc gtgcagccat tcaaccagga gttccttgag
      121 ctggaagttg taagggaagc gatcgcacgt tttgtgcagg tgcttgaggg cggcagcgcg
      181 gccctttgtc tccgccagca agcgggcata ggcggcatgg gcgtcgtccc ccaggggttc
      241 cacctccaat actttggccc acaccttgcg cgcgatttcc aggtctccct gtgcagcggc
      301 caggttcgcc gtcgaacgca gccaggccgt cttctgcgaa tggcccttgg cctggatgag
      361 cagctcgcgc gcctgggtga acctgccgaa ctggatgcgc tgatcgatcg cgtagaggag
      421 cagatcggcg tcgtccggcc gccggctcag ggctttttcc aggacctcga agccttcgcg
      481 ggtccgttcg agctggaagt aagcccagga cagcgtccgc gccggctgtc cggacttgct
      541 gccgaagcgc tcgaagcgct gctccaggaa ttcgagggct tcctcggttt tgcccagcgt
      601 gctggccgcc tggaaatagg agcgggccag gtgctcgtcg gtttcctcca gacaggcggc
      661 gatgcggtac aggtcgaagg cttcgggaaa ctgccgcctg tcccaatgaa tccgcgccag
      721 gcaatgaaag gtgcgggcat cgccgggatt gtaacggagc gaccgccgca aaaggtgcag
      781 ggcgcgcgga tgctcgcggg catcgtcggc caactcctgg gcatattgct gccagcacgc
      841 cggatcggag attttctgct cgctcagttt tttgagcagg gcaaggtatt cgtcgcggcg
      901 ggccatggtg cgcaggcagt tgaccttgga aagctgccag cgcaaatctt ccgggaacag
      961 ctctagttgt ttctcggtga cggccaggat gctgggggta tcggaatcgt agactgccag
     1021 ggtgcggcga gccagatacg ccaaccgatg tttgcccgct ttggcttcca gctcgcggca
     1081 aacctgctcc gccttggcgc ggtcgtgtgt ttccagcgcc ttttccaact gatacatgtg
     1141 atcgtacagg tcggaatcgg gcagattgag ggacgcgagt ttctccttgt cctttagagg
     1201 gagcagggcc atcccgcgcg ggccgctggc cgcgtagcgt tctgccaatc cctctgccag
     1261 gaattctgat tgatgccgct cccccggatc gcggatgatc aaggtgccgc ggatgctgtc
     1321 gtagccgatt accgcttgca gatgcgagct gctgacttcc ggtgtcgtca aggtaaaggg
     1381 aatgccctgg tcgagcacgg caacggcgct atcccaggtt acggtgaatt cgcgcgtgaa
     1441 ccagctgctg tccatggccc attggcgctc gctgtgattg ggcgtgccgg cataggtgat
     1501 ggcggcggcc atttccagat ggtcgccggg catttcccag aaccggcaga tggccgccag
     1561 cgttgccggc gcacacgtct ggaaatgttg ccgcacgaag ccgaccggca agcacacgcg
     1621 cttgccatcc gccggtgggt tttccagtcg tttgacctgg gcttcgaaga agcggccttt
     1681 gaccttcttg gcctcttcgc gggattgttc gatgtcgccg cagtaataag ccgcgtcgga
     1741 tcgccgggcc gccagccatt cggccatgcc cttgtccagg aggggcgcca ggcgggcgaa
     1801 ctcctccagg ctccggcttg cctcctcata acgccccagc tccatttgca agttggccag
     1861 ttgcgaccag atggccgagc tttccatgcg ccgggccgct tcggagagca gcttgacggc
     1921 ttcctcatcc tgctcttttt gcacgtgaaa atgcgccagc cattgcacgg ccggccgata
     1981 ccaggggcgg actttcaggg ccgtctgcgc cgccgccatg gcttcctcgt gccggtcctc
     2041 caacgagcac agggccgccc gttccagacg aatccatgga tggtcccagc ccagggattc
     2101 cgcctgtgcc agccatttct ccgctgctgc gaaatcccgc acccggccat acaccatggc
     2161 atgcagcgac agccagtacg agcgaatctc gatgctcgcc tccggaaatg tcccctggct
     2221 tttcacaaat tgcaaggctt tccaggggcc gtgagcatcg agcaggtagc ggccatagaa
     2281 ccaggacgct tccggatcgc tccggtcagt tcgccaggcg cggatgaagt gccactcgcc
     2341 cagtcgcggc ccgcccaggt tgcccgccag ccggcccgcc agaatccgcg cccgcgtccc
     2401 cgtccagcgc ggcaacggcg agatcgtctc cgcctgctga taggcctgca agtacaggcc
     2461 cttgtcgtaa atct
//
LOCUS       DASQCV010000746         3130 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_156080, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000746 DASQCV010000000
VERSION     DASQCV010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3130
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156080"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(60..464)
                     /gene="apaG"
                     /locus_tag="VEQ16_11700"
     CDS             complement(60..464)
                     /gene="apaG"
                     /locus_tag="VEQ16_11700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007003301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HYP64550.1"
                     /translation="MTQAFEAVTQNITVRVQVFYLAEQSVPESSEYKWAYHVTIINEG
                     QETVQLLRRTWRITDALGRVQLVHGEGVVGQQPVLAPGEQHEYTSGTPLATPSGFMTG
                     QYHMRALASGTDFDIDIPTFSLDSPFQNTSLH"
     gene            545..2236
                     /locus_tag="VEQ16_11705"
     CDS             545..2236
                     /locus_tag="VEQ16_11705"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP64551.1"
                     /translation="MKLNPLSGRTAAALCILLSACAAGPLGAIGAPPRPDPTYGAYLA
                     ARYADDTGNPAEAAKYYGIALHEQPNNQALVTEGFMAGLLAGDPAAANLAPRQIRNPL
                     AIMMLGNQAALAGGYAQAQAYFASLPQDELTGLIKPLLIAWAQFGQGNEQAALNGLGP
                     SFNNGSFGAVYVLNAALIADAAGDAKNAAQLYSAVDGSQPNLRLAQILGSWATRQGQN
                     GAAMAELSALVAAHPDLAIALPALQMQLGKPVITSATDGMAEAYLTLAGSLTQPQAAL
                     LRVAFLRFALTLRPDLTAARLLLADTQTGADNPNATPTPVQMQNALDTLAPVKKSDAL
                     YAPAAVQQANLLSALGRTDDAVTLLTGLLANAPNDPGLLSNIADTLRQGSQFQAALPY
                     YDKAIAALGSNPPPAAWTLFFDRGICHDQLGRWDLAEPDMMTALSLAPNEPYVLNYIA
                     YSWALHGENLDKAKTMLSQAVALDPNDGAVIDSLGFVEMKLGNTSKALALLTQAVQLS
                     ADDPEVNGHLGDAFWQAGRPLQAAYQWQRALSLHPDPKLKTELEGKIEQHFGTQK"
     gene            2233..3072
                     /locus_tag="VEQ16_11710"
     CDS             2233..3072
                     /locus_tag="VEQ16_11710"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HYP64552.1"
                     /translation="MSLARFAPAKVNLYLHVTGKRADGYHLLDSLAVFPNVGDRVDAA
                     AGETLNLEISGPFGTVLQGESDNLLLRAARLLAPDRGAALTLEKNLPVASGIGGGSAD
                     AAAALRVLSALWGVEAADLPALALKLGADVPVCLASRPARMQGIGEILAPAPRLPDFG
                     MVLVNPGVAVPTPAVFKARQGSFSPPPDLPASWTDVDAMVADLRCCTNDLQDAAIGIA
                     PVIGEVLDVLAALPGAKLARMSGSGATCFAIFESPAEASAAVDELPEDWWAWGGGLYQ
                     SPL"
BASE COUNT          513 a         1053 c         1024 g          540 t
ORIGIN      
        1 gcaaggggga aatcccgcaa cccaggaatt gcgtgccccc ggaaaccagc gtcccggcgt
       61 taatggaggc tggtattctg gaacgggcta tccaggctga aggtgggaat atcgatgtcg
      121 aaatccgtgc ccgaggccaa agcgcgcata tggtactggc cggtcatgaa gccggatggc
      181 gtggccagcg gcgtgccgga ggtatattca tgctgctcgc ccggggcgag caccggctgc
      241 tggcccacca caccctcgcc atgcacgagc tggacgcggc ccagggcgtc ggtaatgcgc
      301 caggtgcggc gcagtaattg gactgtctcc tgtccctcat tgataatcgt aacgtgatag
      361 gcccatttat attcgctgga ctcaggcacg gactgctcgg ccaggtagaa gacttgtacc
      421 cggacggtga tattctgcgt aaccgcctcg aacgcctgcg tcatcgggta acgctaacgc
      481 agccgcggga ccgccacaag tgccgcattt tgccgggggc ggatggcgct gctacagctt
      541 gggcatgaag ctgaatccgc tgtctggccg cactgccgcc gccttgtgca tccttctctc
      601 cgcctgtgcc gccgggccgc tcggcgccat cggcgcgccg ccgcggccag acccgaccta
      661 tggcgcctac ctcgccgcgc gctatgctga cgacaccggc aaccctgccg aagccgcgaa
      721 atattacggc atcgccctgc acgagcagcc caataatcag gcgctggtga cggaaggctt
      781 catggccggc ctgctggccg gcgaccccgc cgccgccaat ctggcgccgc gccagatccg
      841 caacccgctg gccatcatga tgctgggcaa ccaagcggcc ctggccgggg gttatgccca
      901 ggcgcaagcc tatttcgcct ccctgccgca ggacgagctg accgggctga tcaagcctct
      961 gctcatcgcc tgggcacaat tcggccaggg caatgagcag gcggcgctca acgggctcgg
     1021 gccttctttc aataatggca gcttcggcgc cgtgtatgtg ctcaacgccg cgctcatcgc
     1081 cgatgccgcc ggcgatgcca agaacgcggc gcagctttac agcgcggtgg atggcagcca
     1141 gcccaatctg cgcctggcac agatcctggg cagctgggcg acgcgccagg gccagaatgg
     1201 cgcggccatg gccgagcttt cggccctcgt cgcggcgcat cccgacctcg ccatcgccct
     1261 gccggcactg cagatgcagc ttggcaagcc ggtcattacc agtgcgaccg atggcatggc
     1321 cgaggcctat ctcactttgg ccggctctct tacccagccc caggcggcat tgctgcgcgt
     1381 cgccttcctg cgcttcgccc tgacgctgcg ccccgatttg accgccgcgc gcctgctgct
     1441 ggccgacacc cagaccggcg ctgacaatcc caacgccacc ccgacgccgg tgcagatgca
     1501 gaacgcgctg gacacgctgg cgccggtgaa gaaatcggac gcgctctacg ccccggcggc
     1561 ggtgcagcag gccaatctcc tctcggcgct gggccgcacg gacgatgccg tgacgctgct
     1621 caccgggctg ctcgccaacg cgccgaacga tcccggcctg ctcagcaaca ttgccgacac
     1681 gctgcgccag ggcagccagt ttcaggccgc cctgccctat tacgacaagg ccatcgccgc
     1741 gctcggctcc aacccgccgc ctgccgcctg gaccctgttt ttcgaccgcg gcatctgcca
     1801 cgaccagctc ggccgctggg acctggccga accggacatg atgacggcgc tgtcgctcgc
     1861 ccctaatgag ccttatgtgc tcaactacat tgcctatagc tgggcgctgc atggggagaa
     1921 tctggacaag gcgaagacca tgctctccca ggccgtggct ttggacccga atgatggggc
     1981 ggtgatcgac tcgctcggtt tcgtcgagat gaaactgggg aataccagca aggcgctcgc
     2041 cctgctcacc caggcggtgc aactctcggc cgatgatccg gaagtaaacg ggcatctggg
     2101 tgatgcgttc tggcaggccg ggcggccctt gcaggcggcc tatcaatggc agcgcgcact
     2161 gtcgctgcat ccggacccga aattgaagac cgagctggaa ggcaagatcg agcagcattt
     2221 cgggacgcag aaatgagcct tgcccgtttt gcgccggcca aggtcaatct gtatctgcac
     2281 gtcaccggca agcgggcgga cgggtatcat ctgctggaca gcctggccgt gtttcctaac
     2341 gtgggcgacc gcgtggacgc ggcggcgggg gagacgctga acctggagat ttccgggccg
     2401 ttcggcacgg tactgcaggg ggaaagcgat aatctgctgc tgcgcgccgc gcggcttctg
     2461 gcgccggaca ggggtgcggc gctgacgctt gagaagaatt tgccggtcgc ctcgggcatt
     2521 ggcggcggct cggcggatgc ggcggcggcg ctgcgggttt tatcggcgct ctggggcgtt
     2581 gaggctgccg atctacccgc tttggcactg aagctgggcg cggatgtgcc ggtgtgcctt
     2641 gcctcccgcc cggcgcgcat gcagggcatc ggcgagatac tggcccctgc cccgcgcctg
     2701 ccggatttcg gcatggtgct ggtgaatccg ggcgtcgccg tgcccacgcc ggcagtgttc
     2761 aaagcccggc agggcagctt ctcgccgccg ccagacctcc ccgcctcctg gacggatgtg
     2821 gacgcgatgg tcgcggactt gcggtgctgc accaatgatt tgcaagacgc cgccattggc
     2881 atcgccccgg tcatcggcga ggtgctggat gtgctggccg ccctgcccgg cgccaaactc
     2941 gcccgcatga gcggctcggg cgccacctgc ttcgccattt tcgagagtcc cgccgaggcc
     3001 tcagcggctg tagacgagct gcccgaagac tggtgggcat ggggcggggg gctttaccag
     3061 tcccccttat agcgcctatg aggacccccg cgtattggga cgtcgccaag cggtaaggca
     3121 gcggattttg
//
LOCUS       DASQCV010000747         2575 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1317528, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000747 DASQCV010000000
VERSION     DASQCV010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2575
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1317528"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..370
                     /locus_tag="VEQ16_11715"
     CDS             <1..370
                     /locus_tag="VEQ16_11715"
                     /inference="COORDINATES: protein motif:HMM:NF015316.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="outer membrane protein transport protein"
                     /protein_id="HYP64553.1"
                     /translation="NGTSGTTLAENWRNSWFAGVGTNYQLTPKLMLQAGFAFDQSPVT
                     DSNRTTRIPDANHYDLGIGAQYQLLANTRLELAYGHVFTPGGRINSSAGSSPLTPTGI
                     ITGNYSASDNSVTAGINMIF"
     gene            426..866
                     /locus_tag="VEQ16_11720"
     CDS             426..866
                     /locus_tag="VEQ16_11720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008888623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HYP64554.1"
                     /translation="MTQDDPLYTVTQLGAELGVTVRTLHFYEAQGLITPRRVGNTRVY
                     SQRDRGRMILILRGKKLGFSIREIKEYLELYDMDPTHEQQIKALLKAIKTRINKLTEQ
                     QAALTETLAELHDIEQQAITALQEMRAIAAAKSPPTPLPTGRSL"
     gene            863..1999
                     /locus_tag="VEQ16_11725"
     CDS             863..1999
                     /locus_tag="VEQ16_11725"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013639120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006635 - fatty acid beta-oxidation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HYP64555.1"
                     /translation="MKQAVIAGYVRSPFTLAGKGALAHTRPDDLAAAVVSALVARSGV
                     KAEDIEALVLGCAFPEAEQGLNIARLTVLLAGLPQSVAGYTVNQFCGSSMQAVHIAAG
                     HIATGAGEVFIAGGVESMSRVPMTGFNILPNPKLAEAVPGAYMGMGETAENVAKKWNI
                     SRATQEEFALRSQKRAAAAIAAGNFKDEIVPVQTKAGEVSVDGCPRPDSTAEGLAGLK
                     PAFDAAGSVTAATSSPLTDGATAVLVCSEDYAKANGLRIMARIVSSASAGCAPEIMGI
                     GPVAATKKALARAGLAIGDIDVVELNEAFASQSLACAHDLGIKDETLNIDGGAIALGH
                     PLGATGARLVGKAASLLQRTGKRYALATQCIGGGQGIATILERV"
     gene            1999..>2575
                     /locus_tag="VEQ16_11730"
     CDS             1999..>2575
                     /locus_tag="VEQ16_11730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HYP64556.1"
                     /translation="MADIKKAAVIGAGTMGAAIAAQFANAGTPVLLLDIVPQGATNRN
                     ALAEGAIAKMLKTDPAPFMSNAAAKLVTPGNIEDDLGKLADVDWVVEAIIERLDLKQD
                     LYRKIDAVRKPGTAVSSNTSTIPLTKLVDGSGEAFARDFLITHFFNPPRYMRLLEIVA
                     GPKTDAALAAKVEAFADIHLGKSIVRTKDSPG"
BASE COUNT          498 a          878 c          763 g          436 t
ORIGIN      
        1 caatggcacc tccggcacga cgctggcgga gaattggcgc aatagctggt tcgccggcgt
       61 gggcaccaat taccagctca cccccaagct gatgttgcag gccggcttcg ccttcgacca
      121 gtcgccggtg acggactcca accgcaccac acgcatcccc gatgcgaacc attacgatct
      181 cggcatcggc gcgcaatatc agcttctggc caatacgcgg ctcgagctgg cctatggcca
      241 tgtcttcacg cccggcggcc gcatcaatag ctccgcgggc agttcgcccc ttaccccgac
      301 gggcatcatt acgggcaact attccgcttc cgataattcc gttacggcag gtataaacat
      361 gatcttctaa ccctttacgc agcgccggcc cggccgccgg cgccattgaa cgcaggaacc
      421 aatcgatgac ccaggatgat ccgctctata ccgtcacaca gctcggcgcc gaactcggcg
      481 tgacggtgcg cacgctgcat ttctacgaag cgcaggggct gatcacgccg cggcgggtgg
      541 gcaatacgcg cgtctattca caacgcgacc gcggccgcat gatcctcatc ctgcgaggca
      601 agaagctcgg cttctcgatc cgcgagatca aggaatatct cgaactttac gatatggacc
      661 cgacgcatga gcagcagatc aaggcgctgc tcaaagccat caaaacccgt atcaacaagc
      721 tcaccgaaca gcaggccgcc ctcaccgaaa ctttggcgga actgcacgat atcgagcagc
      781 aggccatcac cgcactgcag gagatgaggg caatcgctgc ggccaagtct ccacccacac
      841 ccctaccaac cgggaggtcc ctttgaagca agccgtcatc gcgggttatg tccgctctcc
      901 tttcactctg gctggcaagg gcgcgctcgc ccatacgcgg cctgacgatt tggccgccgc
      961 cgtggtgtcc gccctggtgg cgcgcagcgg cgtgaaagcc gaagacatcg aagccctggt
     1021 cctgggctgc gcctttccgg aggcggaaca gggcctcaac atcgcccgcc ttaccgtgct
     1081 gctcgccggc ctgccgcaat cggtcgccgg ctataccgtc aaccagttct gcggctcctc
     1141 gatgcaggca gtgcatatcg ccgccgggca tatcgccacc ggcgcgggcg aggtcttcat
     1201 cgccggtggc gtggagagca tgagccgcgt gccgatgacc ggcttcaaca tcctgcccaa
     1261 cccaaagctc gccgaggccg tgccgggcgc ctatatgggc atgggcgaaa ccgccgagaa
     1321 tgtcgccaag aaatggaata tctcgcgcgc cacgcaggaa gaattcgcgc tgcgcagcca
     1381 gaagcgcgcc gccgcagcca tcgccgctgg caatttcaag gacgagatcg tgccggtgca
     1441 aaccaaggcg ggcgaagtgt ccgtcgatgg ctgcccgcgt ccggacagca ccgcggaggg
     1501 gctcgccggg ctgaagcccg cctttgacgc tgccggttcc gtgaccgccg ctacctcctc
     1561 cccgctcacc gatggcgcca ccgccgtgct ggtgtgcagc gaggattatg ccaaggccaa
     1621 cggcctgagg atcatggccc gcatcgtgtc ctccgccagc gccggctgtg cacccgagat
     1681 catgggcatc ggccccgttg ccgcgacgaa gaaggcgctg gcccgcgctg ggcttgccat
     1741 cggcgatata gatgtggtcg agctgaacga ggccttcgct tcgcaatccc tcgcctgcgc
     1801 gcatgatctc ggcatcaagg acgagacgct gaacattgat ggcggcgcca ttgctctcgg
     1861 ccatccgctt ggcgccacag gcgcgcgcct ggtcggcaag gccgccagcc tgctgcagcg
     1921 taccggcaag cgctacgcgc tggccacgca atgcatcggc ggcggccagg gcattgccac
     1981 catcctggag cgcgtgtgat ggcagacatc aagaaggctg ccgtcatcgg cgccggcacc
     2041 atgggcgctg ccatcgccgc ccagtttgcc aatgcgggca cgccggtact gctgctggac
     2101 atcgtgccgc agggtgccac gaaccgcaac gccttggctg aaggcgccat cgcgaaaatg
     2161 ctgaagaccg atcctgcacc tttcatgtcc aacgctgcgg ccaaactggt cacgccgggc
     2221 aatatcgagg atgatctcgg caagctggcc gatgtcgact gggtcgtcga agccattatc
     2281 gaacggctgg atctgaagca ggatctctac cgcaagatcg acgcggtgcg gaaaccaggc
     2341 accgccgttt cctccaacac ctcaaccatt ccgctaacga aactcgtgga cggttcgggc
     2401 gaggcgttcg cgcgcgattt cctcatcacc catttcttca acccgccgcg ctatatgcgc
     2461 ctgctggaaa tcgtcgccgg gccgaagacc gatgccgcgc tggccgcaaa ggttgaagca
     2521 tttgccgaca ttcatctcgg caaatccatc gtgcggacga aggattcgcc cggct
//
LOCUS       DASQCV010000748         2564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2146538, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000748 DASQCV010000000
VERSION     DASQCV010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2146538"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(117..1511)
                     /locus_tag="VEQ16_11735"
     CDS             complement(117..1511)
                     /locus_tag="VEQ16_11735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64557.1"
                     /translation="MAQAQDGGGLGGILGNFLRNAGGFVDANRMALLNIGAGMMGAQS
                     LGQGLGRGFQMAAQRGAPMDIQLQQVNRTAQWLQQQFPNMTPQEAMMYANNPQAMQQI
                     MTYSMGMRPMQWTQIGEDWLGNKRFGFVDPVSHQIIPFEGSSPMGGMGGAGGGGGTIG
                     QGGPAEPPTGEAGATGAGPDAARAYLSQFPKEIQTAVEDYAAGRTMPTGRAGMIQNVQ
                     LIARTYGRILGIPVDDSSFFARKNQRTQFGATGAGTAGGQINFANTSIGHLADMSDQV
                     LKLPNVGTGWMGWAPGSAQVAHGINRAMGSEGQYSPTVNAFNDIRERYVAEITKFYSG
                     SPGAEAERQRAIDVFDSAKTPQELAAAIEAEAHLMRAKMSALDSQWRDVQGPGTAPFV
                     TLKPESADALRRIETNVAKIRGQPAPTTPPGGQLKPMPQSVIDDARNALRQNKPRDLI
                     IQRLQQQGYDPSGL"
     gene            complement(2074..2382)
                     /locus_tag="VEQ16_11740"
     CDS             complement(2074..2382)
                     /locus_tag="VEQ16_11740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64558.1"
                     /translation="MTDQTNGGAPPISVPVGDANLIKTLQHFLTMAERGQICGCAIVA
                     LETMGGVQIAPVVPPNPGAFYVLMGALTSLSMLLNMKVQEFAQQRQPSSILRPNLGMR
                     "
     gene            complement(2382..>2564)
                     /locus_tag="VEQ16_11745"
     CDS             complement(2382..>2564)
                     /locus_tag="VEQ16_11745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64559.1"
                     /translation="VPLPPVRPPQAGPPAVTPMQKSPGMWQGQQQAANPFLQQTSQAL
                     LQPLMKPNFQPVKWMV"
BASE COUNT          473 a          774 c          789 g          528 t
ORIGIN      
        1 taggcgtccg agccgaagtc cggcttggcc ggctgaatgt cggcgaacat gccaccagct
       61 ggcggggctg aagcacctgg cgcgccggag ggaatatcgt caaacattcc catcaatcaa
      121 agtcctgatg gatcgtagcc ctgctgctgc agacgctgga tgatgagatc gcgcggcttg
      181 ttttgcctaa gagcgttcct ggcatcatca atcactgact gcggcatagg cttgagctgt
      241 ccgccaggag gagtagtcgg tgccggttgc ccgcgaattt ttgcaacgtt tgtttcaatg
      301 cgacggagag catcagcact ttctggtttc aaggtgacaa agggcgccgt tcctggccct
      361 tgtacgtcgc gccattgcga gtctagagcc gacatcttcg cccgcataag atgggcctcg
      421 gcctcaattg cagcggcgag ctcctggggg gtcttcgcac tatcgaagac atcgattgcg
      481 cgctgccgct ctgcttcggc gcctgggctg cctgaataga attttgtgat ttcagcgaca
      541 tagcgttccc gaatgtcgtt gaaggcattc acagtgggcg aatattggcc ttcgctaccc
      601 atcgcgcgat tgatgccgtg agcgacttga gctgagcctg gggcccatcc catccagccg
      661 gtgccgacat tcggaagttt cagcacctgg tcgctcatgt cggcaaggtg gccgatcgag
      721 gtgttggcaa aattgatttg cccaccagca gtgccagcgc cggtggcgcc gaactgcgta
      781 cgttggtttt tacgggcgaa gaacgaacta tcgtcgaccg gtatgcccag aattctaccg
      841 taggttcgtg cgatcagttg gacgttttgg atcataccgg cacggcccgt tggcattgtg
      901 cgaccagcag catagtcttc aacggctgtt tgtatctctt ttgggaactg gctgagataa
      961 gcccgagcag catctggacc ggcaccggtt gcgccggcct cgccagtcgg aggttctgct
     1021 ggaccgcctt ggccgatcgt gccgccgccg ccaccggcac cgcccatgcc gcccatcggg
     1081 ctcgaaccct cgaatggaat gatctggtgg cttacaggat caacaaatcc aaaccgcttg
     1141 ttgcctagcc aatcctctcc gatctgcgtc cattgcatcg gccgcatgcc catcgagtag
     1201 gtcatgatct gctgcatggc ctgcggattg ttggcgtaca tcatcgcttc ttggggcgtc
     1261 atgttcggga actgctgctg cagccattgt gctgttctgt tgacctgctg cagctggata
     1321 tccatcggcg ctccgcgctg cgccgccatc tggaaaccgc ggccgaggcc ttggccgagc
     1381 gattgtgccc ccatcatgcc ggcgccgatg ttgagcagcg ccatccgatt ggcatcaaca
     1441 aaaccgccgg cgttgcgcag gaagttgccg agaatgccgc ccaagccacc gccatcctga
     1501 gcctgcgcca ttgcgctgcg ccgctcatca ggccgcggga gaggaacgcg ctcaggctcg
     1561 ggctgcgcct ctggcgccgt gatcgggccc gtaggtaggc cggcccaatc ggcaccggtc
     1621 gtaccttgca tctggccgcc ggtcagcgcg gcgggattgg atggcaaagg aacagggggg
     1681 ccgctgtggg gaaaggctag ggctgcattt tccggcttcg gccccgttac ttggtattgc
     1741 ccaagcgaca atcgtggatc ataccaagcc gcgccggcgg ggccactcac gggatgggtt
     1801 cctaatggaa aaggtccacg ccagggcgat cccataccaa gcaggccagg gcgacctcca
     1861 ggcggagttg aaggcgatcc gacccctagc aatcctggga tcgctccgtg cggcacgcca
     1921 ggcaccggat cggacaacgg cacatcagac cctggccctg gctgcgctgg agcatccagc
     1981 acacgcacca tcgccgtatt gttggcaccg cgtcgccacg gcagcgggag ctgctgctgt
     2041 gcctgggggc cgaaaatgtc ctctaaagcc atgtcagcgc atccctaaat tcgggcgcag
     2101 gatcgatgaa ggctgtcgct gctgcgcgaa ctcttgcact ttcatattaa gaagcatgct
     2161 gaggctcgta agcgcgccca tcagcacata gaaggcacca ggatttggcg gcacgaccgg
     2221 cgctatttgt acgccgccca tcgtctcgag cgcgacgatc gcgcagccgc aaatctggcc
     2281 acgctcggcc attgtgagaa aatgctgcaa cgtcttgatc aggttcgcat cgcccaccgg
     2341 caccgaaatc ggaggcgcgc cgccgtttgt ttggtcggtc atcagaccat ccatttgacc
     2401 ggttggaagt tcggcttcat cagcggctgc agcagcgctt gcgaggtttg ttgcaggaat
     2461 ggattagccg cctgctgttg cccctgccac atgccaggcg acttttgcat cggtgtcacg
     2521 gcaggaggac cggcctgtgg aggacgaaca ggtggcagtg gcac
//
LOCUS       DASQCV010000749         1682 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3304808, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000749 DASQCV010000000
VERSION     DASQCV010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3304808"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..347
                     /locus_tag="VEQ16_11750"
     CDS             <1..347
                     /locus_tag="VEQ16_11750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="oxalate/formate MFS antiporter"
                     /protein_id="HYP64560.1"
                     /translation="QFAYEPIMFVLMSGLAFFGWGAVFSLFPAVSGDMFGRKFATTNY
                     SLLYTAKGAASLLVAQCGLLRTQTGSWTPVFAVMIAADMLAALLAVLVLRPWRVRLAK
                     MEEVLHHSPLNP"
     gene            complement(337..>1682)
                     /locus_tag="VEQ16_11755"
     CDS             complement(337..>1682)
                     /locus_tag="VEQ16_11755"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyl--CoA ligase"
                     /protein_id="HYP64561.1"
                     /translation="PIGIVLSNNLEYLVAFLATTRARAIAAPLNPGYKAEEFRFYLED
                     ANARAVIVAPGDHPAREAARQLQITIWECRLDAQGRVFVRHQSGQAAPNLDRSAPKAS
                     DVALFLHTSGTTSRPKGVPLTHGNLMASIANIAATYQLTPRDRSLIVMPLFHVHGLIG
                     ATLSALHTGGAVVVPAKFSAGAFWQLSSKYGVTWYSAVPTIHQMLLARADQNDALRGG
                     LRFIRSCSSALAPAVFQQLEQRFSAPVLEAYGMTEAAHQMASNPLPPGARKPGSVGRA
                     TGVDIVILDERGGILPAGMQGEISIRGSNVMHGYVNNPEANASSFCNGYFRTGDQGLF
                     DENGYLVLTGRLKELINRGGEKISPLEVDAALLEHPAVAEAVAFAAPDAMYGEEVHAA
                     VVLKGTASPAELQAHCRKRLADFKAPKVIHITEAVPRTATGKIQRRHVAAHFLKG"
BASE COUNT          295 a          530 c          528 g          329 t
ORIGIN      
        1 tccaatttgc ctacgagccc atcatgttcg tgctcatgtc cggactggcc ttctttggtt
       61 ggggcgcggt cttcagcctc ttcccggccg taagcggcga catgttcggc cgcaagttcg
      121 ccacgaccaa ttatagtttg ctctataccg ccaagggcgc cgcctccttg ctggtggccc
      181 agtgcggcct cttgcgtacg caaaccggaa gttggacccc tgtcttcgcc gtgatgatcg
      241 ctgccgacat gctcgcggct ttgctggcgg tgctcgttct gcggccttgg cgagtacggc
      301 tggcgaagat ggaagaagta ctccaccact cgccgctcaa cccttaagaa aatgcgctgc
      361 cacgtgccgg cgttgaatct tccccgtcgc cgtgcgggga accgcttccg tgatgtgaat
      421 cacctttggc gccttgaaat ccgccagccg cttccggcaa tgcgcctgga gttccgcagg
      481 gctggcagtc cccttgagca cgaccgctgc gtgcacttcc tcgccgtaca tggcatccgg
      541 ggccgcaaat gctaccgctt ctgccaccgc cggatgttcg agcagggcgg cgtccacctc
      601 gagcggagag attttttcgc cgccgcgatt gatcagttcc ttgagtcggc cggtcagcac
      661 caagtagccg ttctcgtcga aaagcccctg atcccccgtg cgaaaatagc cgttgcagaa
      721 cgacgacgca ttggcctcgg ggttattgac gtaaccgtgc atgacattac tgccacggat
      781 ggaaatctcg ccttgcattc cggccggcag aatcccgccc cgctcgtcga gaatgacgat
      841 gtcgacgccg gtcgccctgc ccacggagcc aggcttgcgc gcccctggcg gcaggggatt
      901 ggaggccatt tgatgggcag cctcggtcat gccgtaggct tccagcaccg gagcgctgaa
      961 acgttgttcc agttgctgaa agaccgccgg cgccagggcc gagctgcacg agcggataaa
     1021 gcgcaagccg ccacgcaggg cgtcgttctg atcagcccgt gccagcagca tctgatggat
     1081 ggtgggcacc gcggagtacc aggtaacccc gtactttgat gaaagctgcc aaaaggcgcc
     1141 tgcggagaat ttcgcgggaa ccaccacggc tcccccggtg tgcagtgcgg acagggtggc
     1201 gccgatcagc ccatggacat gaaagagcgg catgacgatc aggctgcggt cgcgcggtgt
     1261 gagctgatac gtggccgcga tgttggcgat cgaggccatc aggttgccat gcgtgagtgg
     1321 cacgcctttc ggcctgctgg tagtgccgct ggtgtgcagg aacagcgcga catcgctcgc
     1381 tttcggcgcc gaccggtcga gattcggcgc ggcctggccg ctttgatgcc gcacgaaaac
     1441 tcggccctgg gcatcgagcc ggcattccca gatggtaatc tgcaactgcc gggcggcctc
     1501 gcgcgcggga tgatcgcccg gcgccacaat aaccgccctg gcgttggcgt cttccagata
     1561 gaagcgaaat tcctcagcct tgtaccccgg attgagaggg gcagcgatcg ctcgcgcccg
     1621 ggtcgtggcc aggaaggcga cgagatactc caggttattg gatagcacaa tgccgatcgg
     1681 ct
//
LOCUS       DASQCV010000750         3428 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_156517, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000750 DASQCV010000000
VERSION     DASQCV010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3428
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156517"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..353
                     /locus_tag="VEQ16_11760"
     CDS             <1..353
                     /locus_tag="VEQ16_11760"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HYP64562.1"
                     /translation="ELIAANKDAALGETLMDLRADAAALRAMSYQFAVKSETGPVGSE
                     GSMIRLYFAELAQRVAKASIEIFGIAAPNVLEEHGLGFDYFDAYSETIAGGTAEIQRN
                     IIAERVLGLPRGSR"
     gene            364..1356
                     /locus_tag="VEQ16_11765"
     CDS             364..1356
                     /locus_tag="VEQ16_11765"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HYP64563.1"
                     /translation="MTTIFHATAEQHELIESFSRPLEELFPVARLHKDAGADAAQWLA
                     AAELGWFGIALPEEAGGIGLSVVEEALLFGKFGRHLVSPGFMAATLAAKLVAGDAALA
                     RQIIAGEVTVGVARQNADGIILFDAQDAALVLVISEQGATLHKAGVLTQRKTLDTAQW
                     SITLEAAALPGNPIAQASAEAIGAGINLLIAAQLTGIAAAALEMAVNYAQIRQQFGVP
                     IGSFQAIKHYCTDMAMHVQAAKDSVSFAAVAMAEGRGDYRFQAASALVVAIRAAFFNT
                     GKNIQIHGGMGFSAECDAHLFLKRAHVLETLAGGLKGARAALRAEASIFAKDAA"
     gene            1372..2175
                     /locus_tag="VEQ16_11770"
     CDS             1372..2175
                     /locus_tag="VEQ16_11770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012976528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HYP64564.1"
                     /translation="MDQSLLFELEGAVAVLTLNRPAEGNAMTPEMLIGLEEAWGRIEE
                     DKNIRVAVITGAGERHFCTGASVSKLEIGQGSLHNKPNAAVNRFSPRMCRVTKPVICA
                     VNGLANGGGLHFVADSDIVIASQKAAFMDTHVSVGQVSGLESIGIARRAGLGAALLLG
                     LAGKAYRMPAERAYQLGMVDLLEEDAAATVARAKELAQAIAANSPQAMALTKRAIWSS
                     TEMHDPAAPDFGWELLKSHWAHPDFAEGPQAFAEKRAPNWNPDPNARLK"
     gene            complement(2221..>3428)
                     /locus_tag="VEQ16_11775"
     CDS             complement(2221..>3428)
                     /locus_tag="VEQ16_11775"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HYP64565.1"
                     /translation="RRPLVTLLADVLRMRDGDYETSPSGRNRSDETGILAGALEDFRV
                     ALAQGRENERNATAARERTEALEQETRKTREAAAAALQEVITAVGGGLQHVARGDLRT
                     RLNIGFTAEYEPLRHDFNAAMERLEQLLVGVGANAEAVRSGVSEIAQAADDLSRRTEQ
                     QAANLEETVAAIGQLAQIAKDTTSRTVQARDVAGEVKRCADDSCAVVTKTIGAMDRIN
                     NSAKQISQIIGVIDEIAFQTNLLALNAGVEAARAGDAGRGFAVVATEVRALAQRSADA
                     AKEIKTLIVASNQEVTSGVDLVNETGQALGRILGQIEQLDALVRTIASATSEQASTLG
                     EVNGAVGQMDQVTQQNAAMVEQASAACQALEGEAQTLNAALKQFQTGPAVPATPHHAP
                     VRQYELAAE"
BASE COUNT          554 a         1054 c         1174 g          646 t
ORIGIN      
        1 aagagctgat tgccgcgaac aaggatgcgg cactgggcga aactttgatg gatttgcgcg
       61 ccgatgccgc ggcgctgcgg gcgatgagct atcagttcgc ggtgaagagc gagaccgggc
      121 cggtgggctc cgagggctcg atgataaggc tttatttcgc cgagctggcg caacgcgtgg
      181 cgaaggcgtc gattgagatt ttcggcattg ccgcgccgaa cgtgctggaa gagcacgggt
      241 tgggctttga ttatttcgac gcctattccg aaacgattgc cggcggcacc gccgagattc
      301 aacgcaacat catcgccgag cgcgttctcg ggctgcctcg cggaagcagg taagggggag
      361 ccgatgacca cgattttcca cgcgactgcc gaacagcatg agctgatcga aagtttcagc
      421 cggccgctcg aagaattatt tccggtggcg cggctgcata aggatgcggg tgccgatgcc
      481 gcgcaatggc tggcggcagc ggagctgggc tggttcggca ttgcgctgcc ggaagaggcg
      541 ggaggcattg gcctgagcgt ggtggaagag gctctgctct tcggcaagtt cggccggcat
      601 ctggtgagcc cgggcttcat ggcggcaacg ctggcggcga agctcgtggc gggcgatgcg
      661 gcgctggcgc ggcagatcat cgcgggtgaa gtgactgtgg gcgtggcgcg gcagaatgcg
      721 gacgggatca tcctgtttga tgcgcaagat gcggctttgg tgctggtgat ttccgaacag
      781 ggcgcgactt tgcataaggc cggggtgctg acgcagcgca agacgctcga tacagcgcaa
      841 tggagcatca cgctggaagc ggcggcgctg ccgggcaatc ccatcgccca ggcgagcgcg
      901 gaggcgattg gcgccggcat caatctgctt atcgccgcgc agcttaccgg cattgccgcg
      961 gcggcgctgg agatggcggt gaattatgcg caaatccgcc agcaattcgg cgtgcccatc
     1021 ggctccttcc aggcgatcaa gcattattgc accgatatgg cgatgcatgt gcaggcggcg
     1081 aaggattctg tttcctttgc ggcggtggcg atggcggaag ggcgtgggga ttaccgcttc
     1141 caggcggcgt ccgcgctggt ggtggccatc cgcgctgcgt ttttcaatac gggcaagaat
     1201 atccagattc atggcggcat ggggttcagc gcggaatgcg atgcacatct cttcctcaag
     1261 cgcgcccatg tgctggagac gctggccggc gggctgaagg gcgcgcgcgc ggccctgcgt
     1321 gcggaagcct cgatctttgc taaggatgct gcgtagaaac gggaggacga gatggaccag
     1381 tccctgttat tcgagctgga gggcgcggtt gccgtcctca cgctcaaccg cccggctgaa
     1441 ggcaatgcga tgacgccgga gatgctcatc gggcttgagg aagcctgggg gcggattgaa
     1501 gaggataaaa atatccgcgt cgcggtcatt acgggtgcgg gggaacggca tttctgcacc
     1561 ggcgcctcgg taagcaagct ggaaatcggc cagggctcgc tgcacaacaa gccgaacgcc
     1621 gcagtgaacc gtttttcgcc gcgcatgtgc cgggtgacca agccggtgat ctgcgcggtg
     1681 aacgggctcg ccaatggcgg cgggctgcat tttgtcgcgg atagcgacat tgtcatcgcc
     1741 tcgcagaagg ccgctttcat ggatacgcat gtgagcgtcg ggcaggtttc cgggctggaa
     1801 tccatcggca tcgcgcgccg cgccgggctg ggtgctgcgc tgctgctggg gctggcgggc
     1861 aaggcgtacc gcatgccggc ggagcgggcc tatcagcttg gcatggtgga tttgctggaa
     1921 gaggacgccg ctgccaccgt ggcgcgcgcc aaggaactgg cgcaggcgat tgccgccaac
     1981 tcgccgcaag ccatggcgct gaccaagcgc gccatttggt cctccaccga gatgcacgac
     2041 cccgccgcgc ccgatttcgg ctgggaactg ctgaagtctc attgggcgca tccggatttt
     2101 gccgaaggcc cgcaggcttt tgccgagaag cgcgcgccga actggaaccc ggacccgaac
     2161 gcgcgcttga agtaaggcca gggcagagct ctggccccgc tggagcctga ggcccctgcc
     2221 ttactccgcc gccagctcgt actgccggac tggggcgtgg tgtggcgtgg ccgggacggc
     2281 ggggccagtc tggaattgct taagcgcggc gttgagggtt tgcgcttcgc cttccagcgc
     2341 ctggcacgcc gcgctggcct gttccaccat tgcggcgttc tgctgcgtca cctgatccat
     2401 ctgtcccacg gcgccgttga cttcgccgag cgtgctggcc tgctcgctgg tggcgctggc
     2461 gatggtccgc acgagtgcgt cgagttgttc gatctgcccg aggatgcgcc ccagcgcctg
     2521 cccggtttcg ttcaccagat ccacgccgct cgtcacttcc tggttggagg cgacgatcag
     2581 cgtcttgatt tcttttgccg cgtcggcaga gcgttgcgcg agcgcgcgca cttccgtcgc
     2641 cacgacggca aagccgcgcc ccgcatcacc tgcacgcgcc gcctccacgc ccgcattcag
     2701 cgccagcaga ttcgtctgga acgcgatctc gtcgatcacg ccgataatct ggctgatctg
     2761 cttggcggaa ttgttgatcc ggtccatcgc gccgatggtt ttggtcacca cggcacagga
     2821 atcatcggcg caacgtttca cctcgcccgc cacgtcgcgc gcttgcacgg tgcggctcgt
     2881 ggtgtccttg gcgatctgcg ccagctgccc gatggccgca acggtttctt ccaggttggc
     2941 cgcctgctgc tcagtgcggc gggagagatc gtccgccgcc tgcgcgattt cagaaacacc
     3001 ggagcgcacc gcctcggcat tcgcgcccac gcctacgagc agctgctcca accgttccat
     3061 agccgcgttg aaatcatgac gcagcggctc gtattccgcg gtgaagccga tattcaaccg
     3121 cgtgcgcaaa tcgccgcgtg ccacgtgctg cagcccgccg ccgaccgcgg tgatgacctc
     3181 ctgcagtgcc gccgccgccg cctcgcgcgt cttgcgcgtt tcctgctcaa gtgcctcggt
     3241 acgctcacgc gccgctgtgg cgttgcgctc attctcgcgc ccctgtgcca gggcaacccg
     3301 gaaatcctcc agcgcgccag ccaggattcc ggtttcgtcg ctacggttgc gcccgctcgg
     3361 gctggtctcg taatcgccgt cgcgcatacg cagcacgtca gcgagcagcg taacgagcgg
     3421 gcgccgga
//
LOCUS       DASQCV010000751         2766 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_986413, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000751 DASQCV010000000
VERSION     DASQCV010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_986413"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..966)
                     /locus_tag="VEQ16_11780"
     CDS             complement(<1..966)
                     /locus_tag="VEQ16_11780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64566.1"
                     /translation="MKGKLPGDLPEFDVRLESPALTAVSAARLREETRGLTGLAAVMV
                     EERVHPLWLRAGTADVDRAIFMLDPAACGLKCAHEPRRIVEIGAGAGYRAVAMASEYP
                     GCEILATEADPLLQRTGLLNTLPYDNITYVSAAVGIEETQYGYFGRTGPQGRPSLVAH
                     SAGTIKSRKLGQLLSFHRFSDADTLIISPDAASAQILREKLPPSLRLIAVETGGEPLP
                     EDLARCYPLAQFITVISGDYVLLYRRGQQLLPPAPRPLAVLAADGPARFFQTENVSEG
                     SFFHLSGGGVRLHPNMAGVPPAKLTLSVEIREHAEFQVSLRVTQER"
     gene            complement(963..2120)
                     /locus_tag="VEQ16_11785"
     CDS             complement(963..2120)
                     /locus_tag="VEQ16_11785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019459923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HYP64567.1"
                     /translation="MSYDLAVRMKAWRHHLHSRPELSCQEMDTASYVCGQLDALGIPY
                     TAGVGGHGVVAQLTRGEGPSIGLRADMDALPIQETTGLAYASCRAGVMHACGHDGHTA
                     SLLGAAQMLRDDQDWRGTINFIFQPAEEGYGGAETMLKDGLLARFPMDRIFGYHNWPG
                     LPLGTVALHDGPVMAAAANFAVTLRGRAAHAAMPHLAADPVQGLAHLIVALNTIPARN
                     ADPLEAGVISTCTLSAGEARNQIPHEAAASGTIRALSEATMALLQTRLRDLATHIAAA
                     HNLTADLKIFGTLAATVNEKQATALAAGAARGAGLEVRQDLRPSMAAEDFGRFLHEIP
                     GAYAWIGNGPSASLHSPDYDYNDALLPVAARYLAATARAALRAGAGLTGAA"
     gene            complement(2492..>2766)
                     /locus_tag="VEQ16_11790"
     CDS             complement(2492..>2766)
                     /locus_tag="VEQ16_11790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional 3-demethylubiquinol
                     3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol
                     methylase"
                     /protein_id="HYP64568.1"
                     /translation="GGLLFLSTLNRTPASYLVAKLGAEYMLRLLPVGTHDWGKFITPA
                     ELGRHCRAAGLRLTDTAGLSFSPSARGFRVGRDLSVNYLAAAERGK"
BASE COUNT          537 a          894 c          877 g          458 t
ORIGIN      
        1 ccgctcctgc gtcacgcgca acgacacctg aaactccgca tgctcccgta tttccacgga
       61 aagcgtcagc ttggcaggag gcaccccggc catattgggg tgcagccgca cgccaccgcc
      121 ggacagatgg aagaagctgc cctcggacac gttctcggtc tggaagaagc gcgccggccc
      181 gtccgcggcc agcaccgcga gcggacgcgg cgcgggcggc agaagctgct ggccgcgccg
      241 gtagagcagc acgtaatcgc cggaaatgac ggtgatgaac tgcgccagcg ggtagcagcg
      301 cgccaaatct tccggcagcg gctccccgcc cgtctccacg gcaatgagcc gcagcgaggg
      361 tggcagcttc tcgcgcagaa tctgcgccga ggcggcatcg ggtgagatga tcagcgtatc
      421 ggcgtcgctg aaacggtgga agctgagcag ctgcccgagc ttgcggcttt tgatggtgcc
      481 agccgaatgc gccaccaggg acggccggcc ctgcggtccg gtgcggccga aatagccata
      541 ttgcgtctcc tcgatgccca ccgcggcgct gacataggtg atattgtcat aaggcagcgt
      601 gttgagcagg cctgtgcgct gcagcagcgg gtcggcctcg gtggcgagga tttcgcagcc
      661 cggatattcg ctggccatcg ccacggcacg gtagccggca ccggcgccaa tctcgacaat
      721 gcggcgcggc tcatgcgcgc atttcagccc gcaggcggcg gggtcgagca tgaagatggc
      781 acggtccacg tcagccgtgc cggcgcgcag ccagagcgga tgcacgcgct cctccaccat
      841 tactgcggcg aggccggtga ggccgcgcgt ttcctcgcgc agcctcgcgg cgctgacggc
      901 ggtgagcgcc gggctctcca acctgacgtc aaattcgggc agatcgcccg gcaatttccc
      961 cttcatgccg cccccgtcag tccggcgcca gcacgcaggg ccgcgcgcgc cgtggcggcc
     1021 aggtagcgcg ccgccaccgg cagcagcgcg tcgttataat cataatcggg actatgcaaa
     1081 gaggcggacg ggccattgcc gatccaggca taagcccctg gaatctcgtg caggaagcgg
     1141 ccgaaatcct ctgccgccat cgaggggcgc aaatcctgcc gtacttcgag tccggccccg
     1201 cgcgcagcac cagccgccag cgcggtggcc tgcttctcat tcaccgtggc cgccagcgtg
     1261 ccaaaaatct taaggtccgc ggtaaggtta tgcgccgcgg caatatgggt ggcgagatcg
     1321 cgcagcctgg tctgcagcag tgccatggtt gcctccgaga gggcgcggat ggtgcccgag
     1381 gccgcggcct catgcggaat ctggttgcgc gcctcgcccg ccgacagcgt gcaggtggag
     1441 atgacgccag cctccagcgg gtcggcattg cgggcgggaa tggtgttgag ggcaacgatg
     1501 agatgcgcca gcccctgcac cgggtcggcg gccagatgcg gcatggcggc atgggcggcc
     1561 cggccgcgca gcgtcacggc aaaattcgcg gccgccgcca tcaccggtcc gtcatgcaac
     1621 gccacggtgc cgagcggcag gccgggccag ttatggtagc cgaaaatccg gtccatcggg
     1681 aaacgcgcga gcagcccgtc cttcagcatc gtctcggcgc cgccataacc ctcttcggcc
     1741 ggctggaaga tgaaattgat ggtgccgcgc cagtcctggt cgtcccgcag catctgcgcc
     1801 gcgccgagca gcgaggcggt atggccgtca tggccgcaag catgcatcac cccggcgcgg
     1861 caggaggcat atgccagccc tgtcgtctcc tggatgggca gcgcgtccat atccgcgcgc
     1921 agcccgatgc tggggccctc gccgcgcgtg agctgcgcca ccaccccatg cccgccaacg
     1981 ccggccgtat agggaatgcc cagcgcatcg agctggccac agacatagga ggccgtgtcc
     2041 atctcctggc aggagagttc cgggcgggaa tgcagatgat gccgccacgc cttcatgcgg
     2101 acagcgagat cgtaagacat ggttaggccc ccaagacccc ggcgagacgg tagggaatat
     2161 ggtcccgttt gtcgccatga atgacgcacc gcaaccctgc ggacgatata gtaagtatac
     2221 tgagttacag taaagtaatt tattaaagaa acgtttcatc aacaataacg ctggtgcgga
     2281 gcattttaaa atgccgctga accacgccac gtctctacaa ttcgtaggcc aataaaatac
     2341 gtgacagtac gagatcgaat cttaaataaa agacgtttat ctacaagaat ttattattat
     2401 gattaattat ttttaatcca tttctcatgt gtagattatt cctgtggcgc gcgaaatttc
     2461 gcccccgccc agtttcacat cacccaatcg tctatttgcc cctctcggca gcggccagat
     2521 aattcaccga taggtcacgc cccacccgga aaccgcgtgc cgagggcgaa aaactcaggc
     2581 ccgccgtatc ggtgaggcgc agccctgccg cacggcaatg ccgtcccagc tccgccgggg
     2641 tgatgaattt gccccaatca tgtgtgccca cgggcagcaa ccgcagcata tattcggcgc
     2701 cgagcttggc cacgagatag gaggccggcg tgcggttcag cgtggagaga aacaaaagcc
     2761 cgcccg
//
LOCUS       DASQCV010000752         3281 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3140112, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000752 DASQCV010000000
VERSION     DASQCV010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3281
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3140112"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            66..827
                     /locus_tag="VEQ16_11795"
     CDS             66..827
                     /locus_tag="VEQ16_11795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HYP64569.1"
                     /translation="MNKWLERLAPAAFGIIALSVWQAAVTLGGVPSYVVPGPIDIWQA
                     YLDGYAILNPALLSTLTVTFAALAVATAVGVALAVAMAASRLFRAAVQPWAVMLQVTP
                     IVAIAPLIILWVPQPFIALVVCASIIAFFPILSNTAAGLAATPQDLQDLFRLNGASRW
                     QVLFLLSLPSALPNFLTGLRISGTLALVGAVVAEFVAGSGGFASGLAYRIIEASYRLE
                     IPRMFAALVMLGITGILIYAALGLLERFLLNSRDS"
     gene            890..1096
                     /locus_tag="VEQ16_11800"
     CDS             890..1096
                     /locus_tag="VEQ16_11800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007435897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64570.1"
                     /translation="MTTTTTKPLSKGQLAYEKERAAKAGKTLDEWLKLKAKNAAEEAK
                     KDTPKPAKKPGFLSRLIDKAHKPL"
     gene            complement(1169..1588)
                     /gene="rplQ"
                     /locus_tag="VEQ16_11805"
     CDS             complement(1169..1588)
                     /gene="rplQ"
                     /locus_tag="VEQ16_11805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HYP64571.1"
                     /translation="MRHGLSGRKLGVTSSHRAAMFRNLAVALIKHEQITTTLPKAKEL
                     RPVAEKLITLGKRGDLHAKRQAFNQLRDETIVAKLFDALAERYKGRAGGYTRVLKAGV
                     RYGDAADMAVIELVDRDVSAKGQDSGPKPELVEEDEE"
     gene            complement(1613..2632)
                     /locus_tag="VEQ16_11810"
     CDS             complement(1613..2632)
                     /locus_tag="VEQ16_11810"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010513068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HYP64572.1"
                     /translation="MSLQRNWQTLIKPEQLDIEFGSDAGRVATIIAEPLERGFGMTLG
                     NSLRRILLSSLQGAAVTAVRIDGVLHEFSTIAGVREDVTDIVLNIKQLAVRMHGEGPK
                     RMVLTATGPGEVKASQIQAGHDIEIMNPDLVLCTLDDGATLGIEFTVGSGRGYEAASA
                     NRPEDAPIGLIPIDAIYSPVRRVSYRVEKTRVGQVTDYDKLILEVETNGAVTPEDAVA
                     LAARILQDQLSMFVNFEEPQRLRAEEPRIELPFNPNLLRKVDELELSVRSANCLKNDN
                     IVYIGDLVQKSEQEMLRTPNFGRKSLNEIKEVLTAMGLSLGMTVNDWPPENIEELAKR
                     SDQPF"
     gene            complement(2709..3098)
                     /gene="rpsK"
                     /locus_tag="VEQ16_11815"
     CDS             complement(2709..3098)
                     /gene="rpsK"
                     /locus_tag="VEQ16_11815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002725469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HYP64573.1"
                     /translation="MAKPAARPRKKERKNIISGVAHVLASFNNTMVNITDAQGNTISW
                     SSAGSQGFKGSRKSTPYAAQVAAEDAGRKAREHGMEMLEIEVSGPGSGRESALRALQA
                     VGFQISAIRDLTPIPHNGCRPRKRRRV"
     gene            complement(3138..>3281)
                     /gene="rpsM"
                     /locus_tag="VEQ16_11820"
     CDS             complement(3138..>3281)
                     /gene="rpsM"
                     /locus_tag="VEQ16_11820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HYP64574.1"
                     /translation="KRLMDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKK
                     VTR"
BASE COUNT          587 a         1098 c          944 g          652 t
ORIGIN      
        1 caccagcccc gcttatgtga acctggtggc ggaggttacc catatgctgc gcgaggtcat
       61 gccgcatgaa taaatggctc gagcgcctcg cccccgccgc cttcggcatc atcgctttat
      121 cggtctggca ggcagcagtc acgctcggtg gtgtgccctc ctatgtcgtt cctggcccca
      181 tcgatatctg gcaggcctat ctggacggct acgccatcct caacccggct ctgctgtcca
      241 ccctcacggt caccttcgcc gctctggcgg tggccacggc cgtaggcgtc gccctcgcgg
      301 ttgccatggc tgcgagccgg cttttccgcg ccgccgtgca gccctgggcc gtcatgctgc
      361 aggtcacccc tatcgtcgcc atcgcgccgc tcatcatcct gtgggtgccg cagcccttca
      421 tcgcgctggt tgtctgcgcc agcattatcg ccttcttccc catcctctcc aacaccgccg
      481 ctggcctcgc cgccacgccg caggatttgc aggatctgtt ccgcctcaac ggcgcctcgc
      541 gctggcaggt gctcttcctc ctcagcttgc cctctgccct gccgaatttc ctcaccggcc
      601 tgcgcatctc tggcacgctc gctctggtcg gcgcggtggt ggcggaattc gttgccggct
      661 ctggcggctt cgcctccggc ctcgcctacc gtatcatcga agccagctac cgcctcgaaa
      721 tcccgcgcat gttcgcggcc ctcgtcatgc tcggcatcac cggcatcctc atctacgccg
      781 cgctcggcct gctggaacgg ttcttgctga acagccgtga ttcttgaagc cacacagctt
      841 gaagtttccc gcggactctg caagtttcag ttaaattctg gagagactta tgaccaccac
      901 gaccaccaag cccctcagca aaggccagct cgcctatgag aaggaacgcg ccgccaaagc
      961 cggcaagacc ctcgatgaat ggctgaaatt gaaggccaag aacgccgccg aagaggccaa
     1021 gaaagatacc ccgaagccgg ccaagaagcc gggcttcctc agccgcctca tcgacaaggc
     1081 gcacaagccg ctctaatctg gcgcatcatg caaacaaaaa gggcaagcta aggcttgccc
     1141 ttttttcatt cggaaagagc gaggaggctt actcctcgtc ctcctccacc agctccggct
     1201 tcggcccact atcctggccc ttggcggaca catcgcggtc caccagctcg atcacggcca
     1261 tatcggcggc atcgccatag cgcacgccgg ccttcagcac gcgggtgtaa ccaccggcgc
     1321 ggcccttgta gcgctcggcc agggcatcga acagcttggc aacgatcgtc tcgtcgcgca
     1381 gctggttgaa ggcctgccgc ttggcatgca gatcgccgcg cttgccgagc gtgatcagct
     1441 tctccgccac cgggcgcaat tccttcgcct tgggcagggt tgtggtgatc tgctcatgct
     1501 tgatgagcgc gaccgccaga ttgcggaaca tcgcagcgcg atgcgaagag gtgacgccga
     1561 gtttacggcc gctgagacca tgacgcatgg tttaaaactt cccggttaga cttcagaagg
     1621 gctggtcgga acgcttggcc agttcctcga tattctcggg cggccaatca ttcacggtca
     1681 tgccaaggga caggcccatg gcggtcaaca cttccttgat ttcgttcaaa gacttacggc
     1741 cgaaattcgg cgtacgcagc atttcctgct cgctcttctg caccagatcg ccaatataaa
     1801 cgatattgtc gttcttgagg cagttggctg aacgcacaga gagttccagc tcatccacct
     1861 tgcgcaggag attcgggttg aagggcagct cgatgcgcgg ctcttcggca cgcaggcgct
     1921 gcggctcctc gaaattcacg aacatcgaga gctggtcctg cagaatgcgg gcggccagcg
     1981 ccacggcatc ctccggcgtc acggcaccgt tggtctccac ttccaggatc agcttgtcat
     2041 agtccgtcac ctggccgacg cgggtctttt ccacgcggta agagacgcgg cgtaccggcg
     2101 aatagatcgc atcgatgggg atcaacccga tcggcgcgtc ttccgggcgg ttggcggaag
     2161 ccgcctcata gccgcggccg gagccaacgg tgaactcgat gccaagcgtc gcgccgtcat
     2221 ccagcgtgca cagcaccagg tccggattca tgatttcgat atcgtggcca gcctggatct
     2281 gcgaagcctt cacctcgcca gggccggtcg ctgtcaacac catgcgcttc ggcccctcgc
     2341 catgcatgcg tacggccagc tgcttgatgt tcagcacgat gtcggtcacg tcctcgcgga
     2401 cgccggcaat cgtcgagaac tcatgcagca cgccatcgat gcgcacggcg gtcacggcag
     2461 cgccctgcag cgaagagagc aggatgcggc gcagggagtt gccaagcgtc atgccaaaac
     2521 cacgctccag cggctcggcg ataatcgtgg ccacacggcc ggcatcggac ccgaactcaa
     2581 tatcgagctg ctccggcttg atcagcgttt gccaattgcg ttgcaaagac aaatttgact
     2641 ctttcaacat tcacccctcc ggcccgggcc ggccagagcc acccagacct caagaaaatc
     2701 gcttaccctt agacgcggcg gcgcttgcgc gggcggcagc cattatgcgg gatcggcgtc
     2761 aggtcgcgaa tcgcggaaat ctggaacccc acagcctgca gggcgcggag cgcgctctca
     2821 cggcccgaac cggggccgct cacctcgatt tccagcatct ccatgccgtg ctcgcgggcc
     2881 ttgcggccgg catcctcggc agccacctgg gcagcatacg gggtcgattt acggctgccc
     2941 ttgaaaccct ggctaccggc ggaggaccag gagatcgtgt tgccttgggc gtcggtgata
     3001 ttcaccatgg tgttgttgaa gctggccaga acgtgcgcaa caccggagat gatgttcttg
     3061 cgctctttct tgcggggacg ggcagcgggc ttcgccatat cttaattcct gtaaataaat
     3121 tcgagtgcgt cagacgctta ccgggtgact ttcttcttgc cagcgatggc cacggccttg
     3181 cccttgcgcg tgcgggcatt ggtgtgggtg cgctgaccgc ggaccggcaa gcccttgcga
     3241 tgacgcaggc cacggtagca gcccagatcc atcaggcgct t
//
LOCUS       DASQCV010000753         2539 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1979149, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000753 DASQCV010000000
VERSION     DASQCV010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1979149"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..494
                     /locus_tag="VEQ16_11825"
     CDS             <1..494
                     /locus_tag="VEQ16_11825"
                     /inference="COORDINATES: protein motif:HMM:NF016221.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HYP64575.1"
                     /translation="GSFPHERVWRIPTETSKGDEMRGKWLAAWLVLVPAQALAGSAED
                     IQVQNPWIRYLLPSVPAGGYMVLLNKSDTQATLTAASSPACSSLMLHQSMNMGGTAMM
                     MAVASVPIPAHGQAELVEGGYHLMCTDPKMKAGDHVPLTLTFGDGSSRIMSVPVYGAT
                     GAP"
     gene            491..835
                     /locus_tag="VEQ16_11830"
     CDS             491..835
                     /locus_tag="VEQ16_11830"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HYP64576.1"
                     /translation="MRRAALILVFAPGLAYLDLAPSSAWAAPDGRQIVLHGNGNGAPP
                     CAACHGANGAGNPATGAPALAGRPAGEIAAALMRMGQGKGGNALMQSIARSLNPAEIQ
                     AVAAYFSGLPKP"
     gene            941..2248
                     /gene="ahcY"
                     /locus_tag="VEQ16_11835"
     CDS             941..2248
                     /gene="ahcY"
                     /locus_tag="VEQ16_11835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HYP64577.1"
                     /translation="MADAIVAQDYKVKDISLAEWGRKEIAMAEDEMPGLMALRAEFGK
                     DKPLQGARIIGCLHMTIQTAVLIETLTALGASVRWSSCNIFSTQDQAAAAIAATGVPV
                     FAWKGMNEEEFWWCIEQTVRGPDGWEPNMILDDGGDATQLLHNKYPELLANVKGISEE
                     TTTGVHRLWEMAKTGELKVPAINVNDSVTKSKFDNLYGCRESLVDGIRRGTDVMMSGK
                     VAVVSGFGDVGKGSAASLRNAGCRVKVCEIDPICALQAAMEGYEVTTMEDAAPVGDIF
                     VTATGNVDVITLDHMRAMKHRAIVCNIGHFDSEIQIESLRNYKWENVKPQVDEVVFPD
                     GKRLIVLSEGRLVNLGNATGHPSFVMSASFTNQVLAQIELWGAKPGQYENKVYVLPRH
                     LDEKVAALHLAKVGATLTKLTAKQADYLGLKVDGPFKHDLYRY"
     gene            2248..>2539
                     /locus_tag="VEQ16_11840"
     CDS             2248..>2539
                     /locus_tag="VEQ16_11840"
                     /inference="COORDINATES: protein motif:HMM:NF025046.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HYP64578.1"
                     /translation="MRLWGGILAHLGLAALVGGMLFFGAVMAPLVFTKLPLPVAGPFI
                     RAAFPWYYGYCVASAVVVAVGLLLRRAWLVVLVPVGVILVTGWLWLYLLPALD"
BASE COUNT          457 a          698 c          905 g          479 t
ORIGIN      
        1 ggggcagctt cccgcacgag agggtttggc gtatccctac cgaaacatca aagggggatg
       61 agatgcgcgg aaaatggctg gcggcctggc ttgttctggt tccggcgcag gccctcgcgg
      121 gctcggcgga ggatatccag gtgcagaacc cctggatccg ctatctgctg ccgagcgtac
      181 cggccggcgg ctatatggtg ctgctgaata agagcgacac gcaagccacc ctgaccgcgg
      241 cgagttcgcc cgcctgctcc tcgctgatgc tgcatcagag catgaatatg ggcggcaccg
      301 ctatgatgat ggcggtggcg agcgtgccga tcccggccca tggccaggcg gagctggtgg
      361 agggcgggta tcatctgatg tgcacggacc cgaaaatgaa ggcgggcgac catgttcccc
      421 tcactttgac cttcggcgac ggctccagcc ggattatgag cgtgcccgtc tatggcgcca
      481 cgggggcacc gtgaggcgcg cggcgctcat cctggttttc gcgccgggcc ttgcctatct
      541 ggatttggcg ccgtccagcg cttgggcggc accggatggg cggcagattg tcctgcacgg
      601 caatggcaat ggcgctccgc cctgcgccgc ctgccatggc gccaatggcg ccggcaatcc
      661 ggccactggg gcgccggcac tggcgggccg gccagcgggt gaaattgcgg cggcgctgat
      721 gcggatgggc caaggcaagg gcgggaatgc gctgatgcaa tccatcgccc gcagcctgaa
      781 tccggcggaa attcaggccg ttgccgcgta tttttccggc ctgccgaagc catgaagcga
      841 ggcaggctgt tggcagaggc cctgattgac aaggatataa acatatcttt atatcctgtg
      901 gagattatgt acgcaggata atttgcagag gattgacgat atggcggatg caatcgtggc
      961 acaggactat aaggtcaagg acatctcgct ggctgaatgg ggccgcaagg aaattgccat
     1021 ggccgaggat gaaatgcccg gcctgatggc gttgcgggcg gaattcggca aggacaagcc
     1081 actgcagggt gcgcgcatca tcggctgcct gcacatgacc atccagaccg ccgtgctgat
     1141 cgagacgctg acggcgctcg gtgcctcggt gcgctggtcc tcctgcaaca tcttctcgac
     1201 gcaggaccaa gccgccgccg cgattgccgc gacgggcgtg ccggtgttcg cctggaaggg
     1261 catgaacgag gaagaattct ggtggtgcat cgagcagacc gtgcgcggcc cggatggctg
     1321 ggagccgaac atgatcctcg atgatggcgg cgacgccacc cagctgctgc acaacaagta
     1381 ccccgagctg ctggcgaacg tgaaaggcat ctcggaagag acgaccacgg gcgtgcaccg
     1441 cctgtgggaa atggcgaaga cgggcgagct gaaggtgccc gcgatcaatg tgaacgattc
     1501 cgtcacgaag tcgaaattcg acaatctcta tggctgccgc gagagcctgg tggacggcat
     1561 ccgccgtggc acggatgtga tgatgtccgg caaggtagcg gtggtgagcg gcttcggcga
     1621 cgtcggcaag ggttccgccg cttcgctgcg caatgccggg tgccgggtga aagtgtgcga
     1681 gatcgatccg atctgcgcgc tgcaggcggc gatggaaggc tatgaggtga cgacgatgga
     1741 agatgccgcg ccggtgggcg acatcttcgt caccgccacg ggcaatgtcg atgtcatcac
     1801 gctcgaccat atgcgggcga tgaagcaccg cgccatcgtc tgcaatatcg ggcatttcga
     1861 ttccgaaatt cagattgaga gcctgcgcaa ttacaaatgg gaaaatgtga agccgcaggt
     1921 ggacgaggtg gtgttccccg acggcaagcg gctcattgtg ctctcggaag ggcggctggt
     1981 gaatctgggc aatgcgaccg ggcatccgag cttcgtgatg tcggcgagct tcaccaacca
     2041 ggtgctggcg cagatcgaac tgtggggcgc caagccgggc cagtatgaga acaaggtgta
     2101 tgtgctgccg cggcatctgg acgagaaggt ggcggcgctg catctcgcga aagtgggcgc
     2161 gacgctgacg aagctgacgg ccaagcaggc ggattatctc ggcctgaagg tggatgggcc
     2221 gttcaagcac gatctgtacc gctactgatg cgtctctggg gcggcatcct cgcgcatctg
     2281 ggcctcgcgg ccctggtggg cgggatgctg ttcttcggcg cggtgatggc gcctttggtt
     2341 tttacgaaac tgccgctgcc ggtggcgggg ccgttcatcc gcgcggcgtt tccctggtat
     2401 tatgggtatt gcgtggcgag cgcggtggtt gtggcggttg ggttgctgct gcggcgcgcg
     2461 tggctggttg tgctggtgcc ggtgggcgta attttggtga cgggatggct gtggctgtat
     2521 ctgctgccgg cgctggatg
//
LOCUS       DASQCV010000754         2735 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1318442, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000754 DASQCV010000000
VERSION     DASQCV010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2735
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1318442"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1158
                     /locus_tag="VEQ16_11845"
     CDS             <1..1158
                     /locus_tag="VEQ16_11845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64579.1"
                     /translation="TAPKEYSDEIGPSLFWGGFGIPATGARVSKDTTGPGAIPCITAV
                     SPIKTVNATLTAGAGTLTVAANAVANTPFTNLTTYAAGRAPVPIYTSAGVLTQGIGLD
                     LGIDTATFQTAGTITLSVPANAWRYNKPGLWLAMLNGGIGGACLFTQVQSVNTSTGVI
                     TVLPAPTCTNGATGQICFTNRYNPNLYGSGPPTSIGGEVPAGSARISIPECGNGRGVG
                     ILGSTGGPANIPILIQGTDCYAAYTSEIINTTAGASTAWGKKTYDTFISATPLQNGGA
                     FNFTVVTSDLIGLPISVLSANGLYQVLFAGAAAGAANYTIVPADLTNPATQSTGDPRG
                     GIQLTANGPGAAPTITWAPPALLTVWQVFDPLAVMLSSGINGGPLLGVPSV"
     gene            1169..1558
                     /locus_tag="VEQ16_11850"
     CDS             1169..1558
                     /locus_tag="VEQ16_11850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64580.1"
                     /translation="MRGEEDRECRAKGGGIKMGGIKKNVIREFHGAHPKNTPDGTLSR
                     GSGIFREDGGAVVDRADGGIVKRLKGGRVAKAIGGSISGGGKKPSMGRAGRARGGGVG
                     ADLHPRTHNAGSGPKQRSIMPESDAEP"
     gene            1674..1913
                     /locus_tag="VEQ16_11855"
     CDS             1674..1913
                     /locus_tag="VEQ16_11855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64581.1"
                     /translation="MTVSAKTRASLPASRLGRPKSGGFPMPDKRHAAIAKGFAAMHNA
                     PDKAAIDAKADRILAKKRGGFIEGKGKKPHLGRKA"
     gene            1913..2260
                     /locus_tag="VEQ16_11860"
     CDS             1913..2260
                     /locus_tag="VEQ16_11860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64582.1"
                     /translation="MRPVTVNLGPGAATNATSAMANLDEWADAPLGVQLVVTAGTATV
                     QHSMDNPCDLVNPVPVGSMVWDTSLVPAGAIGATGTISFSIATAPLWMRILAATGPAT
                     ARMTLVQYNVTEP"
     gene            2297..2719
                     /locus_tag="VEQ16_11865"
     CDS             2297..2719
                     /locus_tag="VEQ16_11865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64583.1"
                     /translation="MRAITATVTPGATSAMARMDNYASAGLAVQIVASGGAAFSLRHS
                     HDDPNELVNPVPVGSMVWGSSLLPTGAANGTSNISFVIMAAPLWMQFNLTNATGSARA
                     IFLQVGTHSHSNIASGPFAPPHLMQATREGTNYGAIAK"
BASE COUNT          554 a          874 c          818 g          489 t
ORIGIN      
        1 acggcgccga aagaatactc tgacgaaatc gggccgagtc tgttctgggg cggcttcggc
       61 atccccgcga ccggagcgag ggtgagcaag gacacaactg ggccgggcgc gatcccctgc
      121 attacggcag tgagcccgat aaagaccgtt aacgccacct tgaccgctgg cgctggcacg
      181 ctgacagtcg cagccaatgc ggtcgccaat acgccgttca ccaacctgac cacctacgcg
      241 gctgggcgtg cgcccgtgcc gatctacacg agcgctggcg ttctgacgca gggtatcgga
      301 ttggacctcg gcatcgatac ggcgaccttc cagaccgccg ggacaatcac gttatccgtg
      361 cctgccaatg catggcgcta caacaagccg ggcctctggc ttgcaatgct caatggcggc
      421 attgggggcg cgtgcctgtt tactcaggtc cagtcggtca acacatcaac tggcgttatc
      481 acggtcttgc ccgcgccaac ttgcaccaat ggcgcgacgg gccagatttg cttcaccaac
      541 cgctacaatc caaatttgta tggatcaggt cctccgacca gcattggcgg tgaggttccg
      601 gctggcagcg cgcgcatcag cattccggaa tgcggcaacg ggcgcggtgt cggcattctc
      661 ggcagcactg gcggcccggc caatatcccg atcctgatcc aagggaccga ctgctacgcc
      721 gcctatacca gcgagatcat caacaccacg gcgggcgcgt cgacggcgtg gggcaagaaa
      781 acctatgaca cgttcatctc cgccacgccg ctccaaaatg gaggcgcgtt caacttcacc
      841 gtcgtcacat cggacctcat cgggctgccg atcagtgtcc tatcagccaa tggcctttat
      901 caggtactgt tcgcgggcgc ggcggcgggc gccgccaact acaccatcgt tcctgcggac
      961 ctgaccaacc cggctaccca gagcactggc gatcctcgcg gcggcatcca gctaactgcc
     1021 aacgggcccg gcgccgcgcc gaccatcaca tgggcgccgc ccgcgctgct cactgtctgg
     1081 caagtattcg atccgctggc ggttatgcta tcaagcggca tcaatggcgg cccgctactc
     1141 ggcgtgccat cggtttaagg aggccccaat gcgaggcgaa gaagatcgcg aatgccgcgc
     1201 caagggcggc ggcatcaaga tgggcggcat caagaagaat gtcatccgcg agtttcatgg
     1261 agcgcaccca aagaacacgc cggacgggac gctgtcacgc ggcagcggca ttttccgcga
     1321 ggacggcgga gcggtggtcg accgtgcgga cggcggcatc gtcaagcgcc tcaagggagg
     1381 ccgggtcgcg aaggcgattg gcggctcgat ttccggcggc ggcaagaagc cgtcgatggg
     1441 aagagcgggc cgagcgcgtg gcggcggcgt tggcgctgat ctccatccaa ggacacataa
     1501 tgcgggctct ggcccgaagc agcgttcaat catgcctgag agcgacgcgg agccataatt
     1561 cggaaaggac ttcccacagc cttcttgtga tggcagccca gcctttcata ggggcgtccg
     1621 tttccgcatc gccgcccaga ccctttgggc ggcgtctttt ttaggaggcc tagatgaccg
     1681 tatcggccaa aacgcgagca agccttcccg cctctaggct tggccggccg aaatccggcg
     1741 gctttcccat gccggataag cgtcacgccg ccatagcgaa gggcttcgcc gccatgcaca
     1801 acgcgccgga caaggcggcc atcgatgcaa aggcagatcg catcctcgcc aaaaaacgcg
     1861 gcgggttcat cgaaggcaaa ggcaagaagc cccatctcgg aaggaaagcc taatgcgccc
     1921 tgtcacagtc aacctcggac ccggcgcagc gaccaacgcc acgtcggcca tggcaaatct
     1981 cgatgaatgg gcggatgcgc ctcttggcgt tcagcttgtt gtcaccgcag ggacggccac
     2041 ggtgcaacac tcgatggaca atccttgcga tctggtcaac ccggttcctg tcggatcgat
     2101 ggtctgggat acgagccttg ttccggctgg cgccataggc gcaaccggca cgatctcttt
     2161 ctcgattgca accgcgccgt tatggatgcg aatcctagct gcgacgggcc ccgcaactgc
     2221 tagaatgaca ttggtgcaat acaatgtcac tgagccataa tgtaattagc gtccgattcg
     2281 cctcggagca tagcgcatga gggcaatcac tgccaccgtt acgcccggcg caacatcggc
     2341 catggcgcgt atggataatt acgcaagcgc agggcttgcg gtgcagatcg tcgcttccgg
     2401 cggcgcggcc ttctcgctta ggcactcaca cgatgatcct aatgagttgg tcaacccagt
     2461 ccctgtcggc tcgatggtat ggggttcttc cctgcttccg acaggcgccg cgaatggcac
     2521 gtcgaatatc tcattcgtca tcatggccgc gccgctctgg atgcaattca acctgaccaa
     2581 cgcgaccgga tcggcgcgcg caatctttct tcaggttggc acccatagcc actccaatat
     2641 cgctagcggc ccattcgctc ctccgcattt gatgcaggca acgagagagg gcacgaacta
     2701 cggggccata gcgaaatgag ttccgacctc gccac
//
LOCUS       DASQCV010000755         2960 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1651364, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000755 DASQCV010000000
VERSION     DASQCV010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2960
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1651364"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /locus_tag="VEQ16_11870"
     CDS             <1..331
                     /locus_tag="VEQ16_11870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HYP64584.1"
                     /translation="GRFPLWLAPTQVVVATIVSDADAYAEEVTASLQAAGLAVELDVS
                     NQKIQAKIRDHSLRYVPNILVVGRKEAEERKVALRRLGGAAQEILSLEEAVDLLKTEA
                     TPPDLRS"
     gene            334..981
                     /locus_tag="VEQ16_11875"
     CDS             334..981
                     /locus_tag="VEQ16_11875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HYP64585.1"
                     /translation="MALQVGIIPVTGFQQNCTLLWDDETLEAAIVDPGGNIPRLTAAL
                     EKTGAKLTAIYLTHGHMDHAGGATELHELTGAPVIGPHAAERFLLETMEEQGEMYRMK
                     ARNCTPSRYLTDGETVNMAGATFTVRHCPGHTPGHVVYLAMEQKFGIMGDVLFRDSIG
                     RTDFGNYGNYEQLMASIRDKLLTLPDDFAFTCGHGPSSTIGRERELNPFLAELID"
     gene            complement(1004..1678)
                     /locus_tag="VEQ16_11880"
     CDS             complement(1004..1678)
                     /locus_tag="VEQ16_11880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HYP64586.1"
                     /translation="MIPPGVPLRVTGDVHGDAKAFAAAAETDRFIIQLGDLVDDGPDT
                     PGALAVMFRLLAEKRGLFILGNHDYKLARALRGERVRSATTSRTMDELPANLREPTLG
                     MIAAAPAWASSEGRLFVHGGFHPAMLERPGEPMPASGRPGPLLARALYGQTTGRVTGA
                     GKPERLLRWVDEIPANFTVYCGHDQRSLNGRPYIRHGRQGGTAIFLDTGAGKGGHLSW
                     IDLDPL"
     gene            complement(1890..2546)
                     /locus_tag="VEQ16_11885"
     CDS             complement(1890..2546)
                     /locus_tag="VEQ16_11885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoesterase"
                     /protein_id="HYP64587.1"
                     /translation="MTAAPLRFRDERLMLDPAGAAFWPAKRVLIAADPPFAAPAPSFG
                     APPTDSRGALERLNRLIRLYRPAKVIMLGHGGATKLQKDELARLTAMAREANFLWVGP
                     VAADLPGSFVAVHREGPFTFRHEPSPKLAPREIEICGALRPWASIDARPRRIARPCFV
                     ADSSRLILPAFGSNGGGQDVREPAVTRLFPRGLRVFLLGQEQLYSFALEQLGRMAEVA
                     "
     gene            complement(2629..>2960)
                     /locus_tag="VEQ16_11890"
     CDS             complement(2629..>2960)
                     /locus_tag="VEQ16_11890"
                     /inference="COORDINATES: protein motif:HMM:NF013304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HYP64588.1"
                     /translation="ATYRNKTKLMLGDGTGTGLPDAQGLQVAVRAHANFAEFVPLTLI
                     ILACLVHEDVNQIFFLILCATLVLGRILHPIGIRILTPNVPRAVGAMLTWAVLLIASV
                     ATIVLAL"
BASE COUNT          560 a          920 c          985 g          495 t
ORIGIN      
        1 cgggcgcttc ccgctctggc tggcgccgac gcaggtggtg gtggctacca tcgtttctga
       61 tgcagacgcc tatgccgagg aagtgacggc ttccttgcag gcggccgggc tggcggtgga
      121 gctggatgtg tccaaccaga aaatccaggc gaaaatccgc gatcactcgc tgcgttatgt
      181 gcccaatatc ctcgttgtcg ggcgcaagga ggcggaggag cgcaaggtgg cgctgcgccg
      241 gctcggcggg gccgcgcagg aaattctttc gcttgaagag gcagtggatt tgctgaaaac
      301 tgaggccacg ccgccagatt tgcggagctg agcatggcat tacaagttgg catcatcccg
      361 gtcaccggct tccagcagaa ttgtaccctg ctgtgggacg acgaaacgct ggaagcggcc
      421 atcgtcgatc cgggcggcaa tatcccgcgc cttaccgccg cgctggaaaa gaccggggca
      481 aaactcaccg ccatctacct cacccacggc catatggacc atgccggcgg cgccacggaa
      541 ctccacgagc tcactggcgc cccggtcatc ggcccgcacg ccgccgagcg gtttctgctc
      601 gaaaccatgg aggagcaggg cgagatgtac cgcatgaagg cgcgcaactg cacgccctcg
      661 cgctatctca ccgatggcga aacggtgaac atggcggggg caacctttac cgtgcgccat
      721 tgcccaggcc acacgcccgg ccatgtcgtc tatctcgcca tggagcagaa attcgggatc
      781 atgggcgacg tcctgttccg cgattccatc ggccgcacgg attttggcaa ttacggcaat
      841 tacgaacagc tcatggcctc catccgcgac aagctactca ccctgcccga cgatttcgcc
      901 ttcacctgcg gccacggccc cagctccacc atcggccgcg aacgcgaact caacccgttc
      961 ctggccgagc tgatcgacta aaggccgggg gcttatcccc agactatagc gggtccagat
     1021 cgatccagga caggtgaccg cctttgcccg cgccggtatc gaggaagatg gcggttccac
     1081 cttggcggcc gtggcggata taagggcggc cattgaggct acgctggtcg tggccgcaat
     1141 agacggtgaa gttggccgga atttcgtcga cccagcgcag cagccgttcc ggtttgccgg
     1201 cgccggttac gcgtccggtt gtctggccgt agagggcgcg ggccaggagc ggaccggggc
     1261 ggccgctggc aggcatgggt tcgcctggcc tctccagcat agcggggtgg aagccgccat
     1321 gcacgaaaag ccgtccttcg ctgctggccc aggccggggc agcggcgatc attcccagcg
     1381 tgggttcgcg caaatttgcc ggcagctcat ccatggttcg cgatgtggtg gcgctgcgca
     1441 cacgctcgcc acgcagtgca cgcgccagct tgtagtcatg attgccgagg atgaagagcc
     1501 cgcgtttttc cgccaacagc cggaacatga ccgccaacgc acccggcgtg tcaggcccgt
     1561 catccaccag gtcgcccagc tggataatga aacggtctgt ctccgcggcg gccgcgaatg
     1621 cctttgcgtc gccgtgcaca tcgccagtga cgcggagtgg aacgccgggc gggatcatac
     1681 gcaacccagg cgggaaagca gagagtccat acacattaca gatcagaaat ggggtgcgca
     1741 gcgcctggtt gcaagttaca accggttatg ggttcttcac atttccgtag gccgtggggc
     1801 tggcgcgccc gctcatcgag gatgtagagc agcgccagcg caggtcattc ctgaccaaac
     1861 gaggtgttgc gccgctccct gcgggcggcc taagccactt cggccatccg tcccaattgc
     1921 tcgagcgcga aagagtagag ctgctcctgg ccgagcagga acacgcgcag cccgcgtggg
     1981 aagaggcgag tgaccgccgg ctcgcgcaca tcctgcccgc cgccattgga cccgaaggct
     2041 ggcagaatca gccggctgga atccgccacg aaacaggggc gggcaatgcg ccgggggcgg
     2101 gcgtcgatgc tggcccaggg cctgagcgcg ccgcagattt cgatttcacg cggcgccagc
     2161 ttcggcgagg gctcatgccg gaaggtgaag ggcccttcac gatgcaccgc gacgaagctg
     2221 cccggcagat ccgccgccac cggtccgacc cagaggaaat tcgcctcgcg cgccatggca
     2281 gtcaggcgtg ccagctcgtc cttttgcagt ttcgtcgcgc cgccatggcc cagcatgatg
     2341 actttggctg gccggtacag gcggatgagg cggttgagcc gctccagcgc gccgcggcta
     2401 tcggtgggag gggcgccgaa actgggcgcg ggggcggcga aaggcgggtc ggcggcgatg
     2461 agcacacgtt tggcgggcca gaaggcggca ccagccgggt cgagcatcag ccgttcgtca
     2521 cgaaagcgca gaggggcagc ggtcatttgg caaacttcat gggcgggtaa aagcatattc
     2581 cgttcgcccg cgccatgaat aaaatttata tgaatactta tcttcagttc ataatgcgag
     2641 cacgatggtg gcgacgctgg cgatgagcag cacggcccag gtgagcatgg cccccacggc
     2701 gcgcggcacg ttgggcgtga ggatgcggat gccgatggga tgcaggatgc gccccagcac
     2761 cagcgtggcg cacaggatca ggaagaagat ctggttgaca tcctcatgca ccaggcaggc
     2821 gaggatgatg agggtgagcg gcacgaattc ggcgaaattc gcgtgcgcgc gcaccgcgac
     2881 ctgcagaccc tgggcatcgg gcaaaccggt gccggtgcca tcgccaagca tcagcttggt
     2941 tttgttgcgg taggtcgcca
//
LOCUS       DASQCV010000756         1623 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2974627, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000756 DASQCV010000000
VERSION     DASQCV010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2974627"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..162
                     /locus_tag="VEQ16_11895"
     CDS             <1..162
                     /locus_tag="VEQ16_11895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS607 family transposase"
                     /protein_id="HYP64589.1"
                     /translation="RRIMVIEPDEMTDDIVRDLHEVMVSLCARLYGKRSANNRAKKAL
                     EAITKCADE"
     gene            155..>1623
                     /locus_tag="VEQ16_11900"
     CDS             155..>1623
                     /locus_tag="VEQ16_11900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64590.1"
                     /translation="MSKVFTYQTRLPESSYPALDAYAMLYGQVERKLFAALQSGRGTV
                     NQLKRDFLCRFGITARQFNAVRVGLEGKVASIQERRPELISEAGQRIRKAERVIAKLD
                     AQIGALRDPVKALMAGRPVKPVVPGLRREKLAAATSRRHHKMRRLAILRHRLQALKSD
                     REAGVTRLCFGSRKLFRAQFNLEENGYASHDEWLADWRRARSNPFFVLGSGDETAGCQ
                     GCVARENGDGTLALRLRLPDARAETHGKHVNLDGVRFAYGHEAILAALRSGRRITAST
                     QSGQVVTRRTGTAISYRLLREEKGWRVFLGVAARPVDHVSRRKSGAIGIDVNADHLAI
                     AETDRSGNLVSTSKIGLALYGKRADQARALTGEAAVSIAAQARAAGKPVVLEKLAFQK
                     KKEALEATGPRRARMISSLAYRLVGTSVKSACFRAGVETIEVNPAYTSVIGAVNHARR
                     RGISVHQGAAQSGTCSACPVWRPPCAATAPTARKAGIVR"
BASE COUNT          313 a          500 c          537 g          273 t
ORIGIN      
        1 cggcggatca tggtcattga gccggacgaa atgaccgatg acatcgtgag ggacctgcat
       61 gaagtcatgg tctccctgtg cgcccggttg tatggaaagc gatccgccaa caatcgcgca
      121 aagaaagcgt tggaagcgat aacaaagtgt gccgatgagt aaggtgttca cctaccagac
      181 ccgtctgccc gaaagcagct atccggcgct ggatgcctac gcgatgctgt acggccaggt
      241 ggagcggaag ctttttgccg ccctgcagtc gggccgcggg acggtgaacc agctgaagcg
      301 ggacttcctg tgccgcttcg gcatcactgc ccggcagttc aacgccgtgc gcgttggcct
      361 tgaaggcaag gtggcctcaa tccaggagcg gcgcccggag ctgatttccg aggccgggca
      421 gcgcatcagg aaagcagagc gggtgattgc aaaactggac gcgcagatcg gcgccttgcg
      481 agatccggta aaggcactca tggcgggacg cccggtgaag ccggttgtcc ccgggctgcg
      541 ccgcgagaaa ctggccgccg cgaccagcag gcgtcatcat aagatgcggc gcctggcgat
      601 tctgcgccac cgcctccagg ccctgaaatc cgaccgcgaa gccggcgtta cccgcctctg
      661 cttcggcagc cgcaaactgt tccgcgcgca gttcaacctg gaagagaacg gttacgcttc
      721 ccatgacgaa tggctggccg actggcgccg tgcgcgcagc aacccgttct tcgtgctggg
      781 cagtggcgat gaaacagcgg gatgccaggg atgcgtggcc cgtgagaatg gcgacggtac
      841 gcttgcgctc cggttgagac tgcccgatgc ccgggctgaa acccacggca agcatgtgaa
      901 ccttgatggc gtgcgttttg cctatggcca tgaggcgatt ctcgccgcct tgcgcagcgg
      961 acggcgaata acggcttcaa cccaatcagg gcaagtcgta acccggcgga cagggaccgc
     1021 gatcagttac cgcttgttgc gcgaggaaaa aggctggcgc gtcttcctgg gcgtcgcggc
     1081 gcggccggtc gaccacgtat cccggcgaaa atccggcgca atcggcatcg atgtgaatgc
     1141 cgaccacctc gccattgctg aaaccgaccg gtctggcaac cttgtttcga ccagcaagat
     1201 cgggttggca ctgtatggca agcgcgctga ccaggccagg gcgctgactg gcgaggcggc
     1261 ggtttccatc gcggctcagg cacgtgctgc gggcaagcct gtggtgctgg aaaaactggc
     1321 attccagaag aagaaagagg cattggaggc gaccggaccg cggcgggccc gcatgatctc
     1381 gtcccttgcc taccgcctgg tggggaccag cgtcaagtca gcgtgcttcc gggctggcgt
     1441 ggaaaccatc gaggtcaatc cggcctatac ctctgtgatc ggcgcagtga accatgctcg
     1501 ccggcgcggc atctcggtac accagggcgc ggctcaaagc ggcacatgca gcgcatgccc
     1561 ggtgtggcgg cctccttgcg ccgccaccgc ccctaccgcc cgaaaggccg gtatcgtgcg
     1621 cca
//
LOCUS       DASQCV010000757         5176 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2147932, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000757 DASQCV010000000
VERSION     DASQCV010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5176
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2147932"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..583
                     /locus_tag="VEQ16_11905"
     CDS             <1..583
                     /locus_tag="VEQ16_11905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HYP64591.1"
                     /translation="QEARAKLRSLDFDLMVLDVMMPGETGLEFTGGLRAERAPMMPIL
                     LLTARDTPEDIIAGFEAGADDYLGKPFDPRVLVARIRAMLRRAQPAAQPAAPLQLGGA
                     MFDPGRGELISPTSRVRLTGAELALLMALAARPHETLSREALAAALGLDDVNERAIDV
                     QVTRLRRKIEPDPREPRFLHTIRGKGYSLKPGP"
     gene            591..1922
                     /locus_tag="VEQ16_11910"
     CDS             591..1922
                     /locus_tag="VEQ16_11910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HYP64592.1"
                     /translation="MVRIRPGGVAPERYVRKVLPRGLFGRSLLIVLLPLVLLEAVTLQ
                     IFYGNHLSELSRRLADAVAGEVGFMIDEIDRYPQTRSLIILETNQHFQFQTTFFQGEV
                     LQHLPRPDAPGPVDTDLARALAAELDRPFNVAWYRSPGIIRIDVQMPDGVLRVDVPRK
                     RLYVGTFYLFLVWVIGTSVLMAGIAALFLRTQVRGISRLARAAENFGMGRDSGPIRPE
                     GAVEVRRAATAFNRMQERVRRFMAQRTTMLAGVSHDLRTPLTRLRLALAMQPDIAPDD
                     MADMVGDIEEMERLIGIYLNFARGEGSELAVPTDMPALLEEICANARRANALVTLHVE
                     DGLTATLRPEAMRRALTNLIDNAKRHGIHIWVTAQRSAPGWLHINIDDDGPGIPESQR
                     ETLLRPFESNAPGGTGLGLAIARDIIIAHGGSISLQDRPHGGLRVAIELPL"
     gene            complement(2011..3045)
                     /locus_tag="VEQ16_11915"
     CDS             complement(2011..3045)
                     /locus_tag="VEQ16_11915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006558701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HYP64593.1"
                     /translation="MFSKLLGLMSADMAIDLGTANTLVYVKGRGIVLAEPSVVAIQEE
                     KGRKIVRAVGEDAKLMLGRTPGNIQAIRPLRDGVIADFEVAEEMIKHFIRKVHNRRAA
                     APLIIVCVPSGSTAVERRAIQESAESAGARKVLLIEEPMAAAIGANLPVTEPSGSMIV
                     DIGGGTTEVAVISLGGIVYARSVRVGGDKMDEAIISYIRRTFNLLIGESSAERIKMDI
                     GAAWMDSADDGPARFVKGRDLINGVPREVQVTQRQIAESLAEPVGQIVEAIKVALENT
                     PPELAADIVDKGIMLTGGGGLLNRLDDVLRVSTGLPVMVAENPLQCVALGTGRALEER
                     NLRSVTSSMY"
     gene            3347..3583
                     /locus_tag="VEQ16_11920"
     CDS             3347..3583
                     /locus_tag="VEQ16_11920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YMGG-like glycine zipper-containing protein"
                     /protein_id="HYP64594.1"
                     /translation="MFRLTLPVLLFTAALPLLAGCGYSPGQRALSGGAIGAGAGAIVG
                     GATGMGAGTGALIGAGAGALTGAATSHRQLNLGN"
     gene            complement(3801..4076)
                     /locus_tag="VEQ16_11925"
     CDS             complement(3801..4076)
                     /locus_tag="VEQ16_11925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64595.1"
                     /translation="MSDGHEDDRLAATERVVKLEEELEASGVPVLDHDTLAEAKAVLH
                     QWIDEMVATVVSPGLGRVTLIHPNGRQSSIVSPDLPFLMSRPVGPKA"
     gene            complement(4160..>5176)
                     /locus_tag="VEQ16_11930"
     CDS             complement(4160..>5176)
                     /locus_tag="VEQ16_11930"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HYP64596.1"
                     /translation="IDYWFVGEKNFGSIGGNVIGRDHNKLLGRLAYRTYDDIDPGSYD
                     VRPRVQAMDDMGVWAQICYQNSGVTQAGSLMSLGDNELAVNIIKMYNDAAIERQKESG
                     DRLFTMAHLPLWDEKELMAEARRCIDMGLKGFVLPDTPERLGMPSFYGDYWTPFLELC
                     NDTGTPINFHLNAAIDPNALTWKGFAFEQTLSVVATMFSICNAATLGNWIVSGRLDRH
                     PKLKIGLIESGMGWIPFALEALEHQFDEMLAGKKALVSRRPWEYFKDHFWCTFWFEKV
                     APKMLLETIGEDKVLFETDFPHPTSLYPGVQEHIVETLGGYSYETRKKVLQGNAAKLY
                     NLPF"
BASE COUNT          874 a         1759 c         1623 g          920 t
ORIGIN      
        1 gcaggaggcg cgggcaaaat tgcgcagcct ggatttcgac ctgatggtgc tggacgtgat
       61 gatgccgggc gagaccgggc tggaattcac cggcgggctg cgcgccgagc gcgccccgat
      121 gatgcccatc ctgctgctta cggcgcgcga cacgccggaa gacatcatcg ccggattcga
      181 ggccggggcg gatgattatc tcggcaagcc gttcgacccg cgcgtgctgg tggcgcgcat
      241 ccgcgccatg ctgcgccgcg cccagcccgc cgcccagcca gccgccccgc tgcagctggg
      301 cggcgccatg ttcgatcccg ggcgcggcga gctgatcagc cccaccagcc gtgtccgcct
      361 caccggcgcg gagctcgcct tgctgatggc cctcgcggca aggccgcacg aaacgctctc
      421 gcgcgaggca ctggccgcgg ccctcgggct ggatgacgtg aatgagcgcg ccatcgacgt
      481 gcaggtgacc cgcctgcgcc gcaagatcga gcccgacccg cgcgagccgc gcttcctgca
      541 taccatccgg ggcaagggct acagcctcaa gcccggtcct taaagcgccc atggtacgga
      601 tacgccccgg cggggtggcg cccgagcgct atgtgcggaa agttctcccg cgcggcctgt
      661 tcggacgctc gctgctcatc gtgctgctgc cgctggtgct gctggaggca gtgacgctgc
      721 aaatcttcta cggcaaccat ctctccgaac tctcccgccg cctggctgac gccgtggccg
      781 gcgaggtggg attcatgatc gacgagatcg accgctaccc gcagacgcgc agcctgatca
      841 tcctggaaac caaccagcat ttccagttcc agaccacctt cttccagggc gaggtgctgc
      901 agcatctacc ccggcccgac gcgccggggc cagtggatac cgacctcgcc cgcgctctgg
      961 ccgcggagct ggacaggccg ttcaatgtgg cctggtaccg gtcgccaggc attatccgca
     1021 tcgatgtgca gatgcccgat ggcgtgctgc gcgtcgatgt gccgcgcaag cggctttatg
     1081 tcggcacatt ctatctgttt ctcgtctggg tcatcggcac ctcggtgctg atggccggca
     1141 tcgccgcctt gttcctgcgc acccaggtgc gcggcatctc ccgcctggcg cgggcggcgg
     1201 agaatttcgg catggggcgc gatagcggac ccatccgccc ggaaggtgcc gttgaagtgc
     1261 gccgcgccgc taccgccttc aaccgcatgc aggagcgcgt gcgccgcttc atggcccagc
     1321 gcaccaccat gctcgccggt gtcagccacg atctgcgcac ccccctcacc cgcctgcgcc
     1381 tggcgctggc catgcagccg gacatcgccc cggacgacat ggccgacatg gtcggggata
     1441 tcgaggaaat ggagcgcctc atcggcatct atctcaattt cgcccgcggc gagggcagcg
     1501 agctcgccgt gcccacggac atgccggccc tgcttgagga aatctgcgcc aatgcccgcc
     1561 gcgccaacgc cctcgtcacg ctccacgtcg aggacggcct gaccgcaaca ttgcgccccg
     1621 aggccatgcg ccgcgccctc accaacctca tcgacaacgc caagcgccac ggcatccata
     1681 tctgggtcac cgcccagcgc agcgccccag gctggctgca tatcaatatc gacgatgacg
     1741 gccccggcat ccccgaatcc cagcgtgaaa ccctgctccg ccccttcgaa agcaacgccc
     1801 caggcggcac cggcctcggc ctcgccatcg cccgcgacat catcatcgcc catggcggct
     1861 ccatctccct gcaagaccgc ccccacggcg gcctccgcgt cgccatcgag ctgccgttgt
     1921 aagagagagg caggggtttc acccctgcac cccaccaggg gctctgcccc tggaccccgc
     1981 tgggggtgcc gggggcgaag cccctgccgc tcagtacatc gacgacgtga cggagcggag
     2041 gttgcgctct tcgagggcgc ggccggtgcc gagggcgacg cactgcaggg ggttttcggc
     2101 gaccatcacg ggcaggccgg tggagacgcg cagcacgtcg tccaggcggt tgagcaggcc
     2161 gccgccgccg gtgagcatga tgcctttatc gacgatatcg gcggcgagtt cgggcggggt
     2221 gttttccagg gccaccttga tggcttcgac gatctgcccg acgggttcgg ccaggctttc
     2281 ggcgatctgg cgctgggtga cctgcacttc gcgcggcacg ccgttgataa ggtcgcggcc
     2341 tttcacgaag cgggccgggc cgtcatcggc gctgtccatc caggcggcgc cgatatccat
     2401 cttgatgcgc tctgccgagc tttcgccgat gagcaggtta aaggtgcggc ggatatagga
     2461 gatgatggct tcgtccatct tgtcgccgcc gacgcgcacg gagcgggcat agacgatacc
     2521 gccgagcgag atgacagcca cttccgtggt gccgccgccg atatccacga tcatcgaacc
     2581 ggacggttcg gtgacgggca ggttggcgcc gatggcggcg gccatgggct cctcgatgag
     2641 cagcaccttg cgcgcgccgg cgctctcagc actttcctga atggcgcggc gctcgaccgc
     2701 cgtggagccg gaaggcacgc acacgatgat gagcggcgcg gcggcgcggc ggttatgcac
     2761 cttgcggatg aagtgcttga tcatctcttc cgccacttcg aaatcggcga tgacgccgtc
     2821 gcgcaagggg cggatggcct ggatattgcc cggcgtgcgg cccagcatca gcttggcgtc
     2881 ctcgcccacg gcgcgcacga tcttgcggcc tttttcttcc tggatggcca cgaccgaagg
     2941 ttccgccagg acgatcccgc gccccttcac atagaccagc gtattcgccg taccgagatc
     3001 gatcgccata tcggccgaca tcaggccgag aagtttggaa aacatgaaac cctttctgca
     3061 aggccgcggc cccgcttgcg tcgcaatcct gcgcagggct tacaaaagtg attgcccccc
     3121 ggcaagcccg gaaaccgtgg gcaaggtgca gcgcaacacg gctttatccc gtcatccggc
     3181 gccttaagct tcactttcaa gatgttacac gcgtccagca caacccgggc gccatattgc
     3241 agcacccggc atttaagccg ccatgaaacc ttcgtaagcc ctggcttcct ccctggattt
     3301 gccacaattg cggcaaaaca tctgcaacgt gaaaaggagt ctcaaaatgt ttcgtctcac
     3361 tcttcccgtg ctgctgttta ccgcagcgct tcctttgctt gccggctgcg gctattcgcc
     3421 cggccaacgc gccttgtccg gcggcgccat cggcgctggt gccggtgcca tcgtcggcgg
     3481 cgcgacaggc atgggggccg gcacaggcgc cctgatcggc gcgggcgccg gcgcgctgac
     3541 cggtgcggcg acctcgcacc gccagcttaa tctcggcaat taaaccggac caagaaaggc
     3601 cagggggctc tgccctggac ccgctggggc ctgaggcccc agacccccga tagcttttaa
     3661 gaattgaaaa ggggcctgcc acctagccgc gtcgcggcac ggaggcaggc cccttttcaa
     3721 ttcttttaaa acaactaatg gggtctgggc ctgaggccca gcgggggtcc agggggcaga
     3781 gccccctggc ctttcttggc tcacgccttc ggcccgacgg gcctgctcat caggaagggc
     3841 agatcgggcg acacgatgct ggattggcgc ccattcggat gaatgagggt cacacggccc
     3901 agcccaggcg agaccacggt cgccaccatt tcatcgatcc attgatgcag cacggccttg
     3961 gcctcggcca gcgtgtcatg gtcaagcacc ggcacgccgg aggcctcaag ttcctcttcc
     4021 agcttcacca cgcgctcggt ggccgccagc ctgtcatcct catgaccgtc gctcatgagt
     4081 ctctcctcag gaatgtttct ctgaatatga aagcaaagca cccggctgca agccgggtgc
     4141 tttgctcact gccggccttt tagaagggca ggttatagag cttggcggcg ttgccctgca
     4201 gcaccttctt gcgtgtctcg tagctatagc cgccgagcgt ctcgacgata tgctcctgca
     4261 cgcctggata gagcgaggtg gggtgcggga agtcggtttc gaacagcacc ttgtcctcgc
     4321 cgatggtctc cagcagcatt ttcggcgcca ccttctcgaa ccagaaagtg caccagaaat
     4381 ggtccttgaa atattcccag ggacggcggc tcacgagcgc cttcttgccg gccagcattt
     4441 cgtcgaactg gtgctccagg gcttccagcg cgaacggaat ccaacccatg ccgctctcga
     4501 tcaggccgat tttcagcttc ggatgacggt cgagacggcc ggagacgatc cagttgccga
     4561 gcgtcgccgc gttgcagatg gagaacatgg tcgccacgac cgaaagcgtc tgctcgaagg
     4621 cgaagccctt ccaggtcagc gcgttcgggt cgatggcggc gttgaggtgg aaattgatcg
     4681 gtgtgccggt gtcgttgcac agctccagga acggcgtcca gtaatcgccg tagaaggagg
     4741 gcatgccgag gcgctcggga gtatccggca gcacgaagcc cttcagcccc atatcgatgc
     4801 agcggcgggc ttccgccatc agctcctttt cgtcccacag cggcagatgc gccatggtga
     4861 acagacgatc gccagattcc ttctgacgct cgatcgcggc gtcgttgtac atcttgatga
     4921 tgttcacggc gagctcgtta tcgcccagcg acatcagcga accggcctgg gtgacgccgg
     4981 aattctggta gcagatctgc gcccagacgc ccatgtcgtc catcgcctgc acccgcggcc
     5041 tcacgtcata ggagccgggg tcgatgtcgt cgtaggtccg gtaggccagg cggccgagca
     5101 gcttgttgtg gtcgcggccg atcacgttgc cgccgatcga gccgaagttc ttctcgccga
     5161 cgaaccagta gtcgat
//
LOCUS       DASQCV010000758         5534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2975060, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000758 DASQCV010000000
VERSION     DASQCV010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5534
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2975060"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..438)
                     /locus_tag="VEQ16_11935"
     CDS             complement(<1..438)
                     /locus_tag="VEQ16_11935"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HYP64597.1"
                     /translation="MTEQKTGKLVPLEGLRGIAAIIVMLGHMVRGLVPPDPGNLDALK
                     QVHKWMLNGGAAVSVFFVLSGFILSLPFARDRSPLRVAIALLKRWPRLAALTSIACLL
                     SWAMITLSQDAYEQAAAVTGNHWMANHFNAPLHGQEISWPEALR"
     gene            complement(500..1246)
                     /locus_tag="VEQ16_11940"
     CDS             complement(500..1246)
                     /locus_tag="VEQ16_11940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HYP64598.1"
                     /translation="MRRLLVLLLLLLPCAAQAQLNLATAPIDRLYLPWWQARWHATLE
                     EARATPDSRIVWLGDSITQNWQRAGLHDYDDYLPVWERYYAPYQALDFGFKGDTTADL
                     IWRLDHGQVAGLHPQLAIILIGANNFGHVHWDAQMTVPGIESVVRITHRQLPGAHILL
                     LGVLPSIRSPWVDEQTELTNAALARAYAGSNLVTFINLAPLFLTDGRVNAAFYLDPHL
                     TPPDPPLHPDAASMARIASALAPYVTEYVK"
     gene            complement(1246..2079)
                     /locus_tag="VEQ16_11945"
     CDS             complement(1246..2079)
                     /locus_tag="VEQ16_11945"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011941726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HYP64599.1"
                     /translation="MDFLHAILFAILQGATELFPVSSLGHAVVVPALLHWGIDQKGPG
                     FLPFLVMLHLGTAAGLFAYFIKDWSAIFFGALGRGYEAQTSAARALLGKLIVATLPLI
                     IIGVVLKKPLEHLFGAPLLASLFLIANAGLLLLGERLRGQSLRGGEMDYKDAFIIGLY
                     QCLAFLPGISRSGAAMVGALRRGIDHEGAAKFSFLIGTPAIIAAGLGEVPKLIHAHEL
                     HALFGMSLLAAVVAGVVAYASTDFLMRYFKGHDSWALRPFAWYCAAFGTGSFVLLLLR
                     I"
     gene            2194..3417
                     /locus_tag="VEQ16_11950"
     CDS             2194..3417
                     /locus_tag="VEQ16_11950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HYP64600.1"
                     /translation="MMSAVATLAIILAALVGMLVRPFGLREAAYAMAGAVALVLFGLM
                     PLKAALRAAGQGWDVALFLTGMMMLAQLAAQEGVFDWAACLMARAARGSPLRLFTYVY
                     ALAVLITVFLSNDATAVVFTPAVAAVARQARVAKKQPYLLICAFVANAASFLLPISNP
                     ANLVVYGAAMPALPQWLRIFLLPSVVAILATFLLLWATQAKALRGMLAVPARMRLEEK
                     GRLTLAGLIIMALLLLLASGLGWHLGPPTFCAGAGTLALVLLRARQSPWPILRGVSWG
                     VLFLVAGLFIMLGALEHIGLTKRLTPLSMQFGPLQLGVALALLCNLVNNLPAGLLAGH
                     VLAGSTPALKAAALIAVDLGPNLSMTGSLATLLWLHALHREAEPVTNWCFLRLGAVMM
                     PAALILALYALRATV"
     gene            3445..4899
                     /locus_tag="VEQ16_11955"
     CDS             3445..4899
                     /locus_tag="VEQ16_11955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012039941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HYP64601.1"
                     /translation="MSLARGAARGVAWNFVTVLVERSFGFLILGLLLRVIPASVVGLI
                     AIASAISDLARVVSASGAGEQVQASPGDRTVEAGAFWSQFLASLLFMGVLFAAAPAIA
                     GLYKQPELAWVLRIMGLNVVMTSFLLVPSARLSSQFRFKVLGLISLGSTMLGGIVALP
                     FAYTGHGVDAMMYQRMVGVGFYAVAVSIAARWLPPPPPAFPVLRESFRFSLPLMEATL
                     VDYISITGYVMLVGLRMPVAALGEFRIAQRLSEVLQEVAFTPARKVFMPVFVAVRHDK
                     VRRFETTRQMLDVLSLAIFFVCAVCGAAAKPIVLLMFGHRWEAAVPVFAIITLMVPAV
                     ALYSVINPLLTAAGRTRLVSLYAWANVATIAAAAWFAAPHGLLALAWALAARGITAVA
                     LFVFAMRQGLERPVAPILRLLVLPSIALAIARLVSWLVLSALPELDLVAQLMVTSGIS
                     ACIFAATALLMAPRRITGAVTRLYGALLGAQPAI"
     gene            4951..>5534
                     /locus_tag="VEQ16_11960"
     CDS             4951..>5534
                     /locus_tag="VEQ16_11960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-formylglutamate amidohydrolase"
                     /protein_id="HYP64602.1"
                     /translation="MTCPYTPFTLLQPARQNAALVLTSPHSGRRYDEAFLAQARLDAQ
                     SLRRSEDSFVEELFGAGPELGVPLLAAEFPRAWCDANREPWELDPAMFADSLPEYANT
                     TSPRVAAGLGTVARIVGAGEPIYGRKLRFAEAKARIETCWRPFHEALAQCIEDTVARF
                     GHCLVLDCHSMPTPLGRMAARADIVLGDGHGTSCG"
BASE COUNT          840 a         1728 c         1883 g         1083 t
ORIGIN      
        1 gcgcagcgcc tccggccagg agatttcctg cccatgcaag ggcgcgttga agtgattcgc
       61 catccagtga ttgccggtga cggcggcggc ctgctcgtag gcatcctggc tgagcgtgat
      121 catagcccag gagagcaggc aggcgatgct ggtgagggcg gccaggcgcg gccagcgctt
      181 gagcaaagca atggccacgc gcagggggct gcggtcgcgc gcaaagggca ggctgaggat
      241 gaagccggac agcacgaaaa acaccgagac ggcggcgcct ccgttgagca tccatttatg
      301 cacctgcttc aacgcatcga gattgccggg gtctggcggc accaggccgc gcaccatatg
      361 gcccagcatc acgatgatgg cggcgatgcc gcgcagccct tccagcggca ccagcttgcc
      421 ggttttctgc tcagtcatgg ctcgggttta gcggctggat gtgtcaggaa tgggacagaa
      481 tccctgcata atgtaaattc tacttcacat attccgtcac gtagggcgcc agcgccgacg
      541 caatgcgcgc catgctggcg gcgtccgggt gcaaaggcgg gtccggaggt gtgagatgcg
      601 ggtcgagata gaaggccgca ttcactcggc catcggtgag gaataagggg gccagattga
      661 tgaaggtgac gaggttgctg ccggcatagg cacgggccag agccgcgttg gtaagttcgg
      721 tttgctcatc cacccagggt gagcggatgg agggcagcac gccgaggagc aaaatatgcg
      781 cccccggcag ttggcgatgg gtgatgcgca ccacggattc gatgccgggc acggtcatct
      841 gcgcgtccca atgcacatgg ccgaaattat tggcaccgat gagaatgatg gcgagctgcg
      901 gatgtagccc cgccacttgc ccatggtcca gccgccagat gaggtcggcg gtggtgtcgc
      961 ccttgaagcc gaaatccaac gcctggtagg gggcgtaata gcgctcccac acaggcagat
     1021 aatcgtcata atcgtgcagc ccggcgcgct gccagttctg ggtgatggaa tcgcccagcc
     1081 agacgatacg gctgtccggt gtcgcgcgcg cttcctccag cgtcgcgtgc cagcgtgcct
     1141 gccaccaggg cagatacagc cggtcgatcg gtgcggtggc cagattcagt tgcgcttgcg
     1201 ctgcgcaggg cagcagcagg agcagcagca cgagcagtcg gcgcatcaga tacgcagcag
     1261 gaggagcacg aaactgccgg tgccgaaggc tgcgcaatac caggcgaagg gacgcagtgc
     1321 ccacgaatca tggcccttga aatagcgcat gaggaaatcc gtgctggcgt aggctaccac
     1381 ccccgccacc acggccgcca gcagcgacat gccgaataaa gcatgcagct catgcgcgtg
     1441 gatgagcttg ggcacttcac ccagcccggc ggcgatgatg gccggggtgc cgatgaggaa
     1501 ggagaatttg gccgcgccct catggtcgat gccgcggcgc agcgccccca ccatggccgc
     1561 gcccgagcgc gagatgccgg gcaggaaggc gaggcattga tagagcccga tgatgaaggc
     1621 gtccttgtag tccatctcgc cgccgcgcag ggactggccg cgcaggcgct cgccgagcag
     1681 cagcaacccg gcattggcga tgaggaacag gctggccagc agtggcgcgc cgaacagatg
     1741 ctcgagcggc ttcttcagta ccacgccgat gatgatgagc ggcagggtgg cgacgatgag
     1801 cttgcccaga agcgcgcggg ctgcggaggt ctgcgcctca tagccgcggc ccagcgcgcc
     1861 gaagaagatc gcgctccaat ccttgatgaa ataggcgaac agcccggccg cggtgccgag
     1921 atgcagcatc accaggaagg ggaggaagcc cggccccttc tggtcgatgc cccaatgcag
     1981 cagggctggc accaccacgg cgtgcccgag gctgctgaca gggaagagct ctgtcgcgcc
     2041 ctggaggatg gcgaagagga tggcatgcag gaaatccatg aaaactcctt catctcaggc
     2101 aagacgccgt tattggctgc attgcagaat ttcgcgccgc cgttaagccg gagccatgca
     2161 gattcggcaa accaaaacac atcttcatgt cccatgatga gcgccgttgc cacgctcgcc
     2221 atcatcctgg ctgccctggt ggggatgctg gtccgcccgt tcgggctgcg ggaggccgcc
     2281 tatgccatgg ccggggctgt ggcgctcgtg ctgtttggcc ttatgcccct gaaggcggcg
     2341 ctgcgcgcgg cgggccaggg ctgggatgtg gccttgttcc tcaccggcat gatgatgctt
     2401 gcgcagttgg cggcgcagga gggcgtgttc gactgggccg cctgcctcat ggctcgtgcg
     2461 gcgcgcggtt cgcctttgcg cctgttcacc tacgtctacg cgctggcggt gctcatcact
     2521 gtctttcttt ccaacgacgc caccgccgtt gtgttcaccc ccgccgtggc tgcggtggcg
     2581 cggcaggcga gggtggcgaa gaagcagcct tatctgctca tctgcgcctt cgtcgccaat
     2641 gccgcgtcgt ttctgctccc catttccaat ccggccaatc ttgtcgtcta tggcgccgcc
     2701 atgccggctt tgccgcaatg gctgcggatt ttccttctcc cttcggtggt ggccatcctt
     2761 gccacctttt tgctcctttg ggcgacgcag gcgaaggcgc tgcgcgggat gcttgctgtg
     2821 ccggcgcgca tgaggctgga ggaaaagggg cggctgactt tggccgggct catcatcatg
     2881 gcgctgctgc tgctgctggc gtccgggctg ggctggcatc tggggccgcc tactttctgc
     2941 gccggtgccg gcaccctggc gctggtattg ctgcgggcgc ggcaatcgcc ctggccgatc
     3001 ctgcgtggcg tgtcctgggg cgtgctgttc ctcgtcgcgg gtctgttcat catgctgggg
     3061 gcgctggagc atatcggcct gaccaagcga ttgacgccgc tcagtatgca atttgggccg
     3121 ctccagctcg gtgtggcgct ggcgctgcta tgcaatctcg tcaataatct gccggccggg
     3181 ctgctggcgg gccatgtgct ggccgggtcc acgcccgccc tcaaggcggc ggcgctcatt
     3241 gcggtggatc tcggccccaa cctctccatg accggctccc tggccacgct gctgtggctg
     3301 cacgcgctgc accgcgaagc cgagcccgtc acaaattggt gttttttgcg cctgggggcg
     3361 gtgatgatgc ccgccgcctt aattcttgcg ctttatgcct tgcgcgccac ggtctagact
     3421 gcccggatag gaggctttct tctgatgagc ttggcaaggg gcgcggcgcg gggtgtggcg
     3481 tggaatttcg tcaccgtgct ggtggagcgc agtttcgggt tcttgatcct gggactgctg
     3541 ctgcgcgtca tcccggcctc ggtggtcggg ctcattgcca ttgcctccgc catttcagat
     3601 ctggcccgtg tcgtttccgc ttccggcgcc ggcgagcagg tgcaggccag ccccggcgac
     3661 cggacagtgg aggccggcgc cttctggagc cagtttctcg cctcgctgct gttcatgggg
     3721 gtgctgtttg ccgccgcgcc tgccattgcc gggctgtata agcagccgga gctggcctgg
     3781 gtgctgcgca tcatggggct caatgtggtg atgaccagct tcctgctggt gccctcggcg
     3841 cggctctcct cgcaattccg ctttaaagtg ctggggctga tttcgctggg cagtacgatg
     3901 cttggcggca tcgtggcgct gcctttcgcc tataccgggc atggcgtgga cgccatgatg
     3961 tatcagcgca tggtcggggt ggggttctat gctgtcgccg tttccattgc cgcgcgctgg
     4021 ctgcccccgc ctccaccggc ctttccggtg ctgcgggaat ccttccgttt ttcgctgccg
     4081 cttatggagg cgaccctcgt cgattacatc tccatcaccg gctatgtgat gctggtgggg
     4141 ctgcgcatgc cagtggcggc cctgggcgaa ttccgcatcg cgcagcggct ttcggaagtg
     4201 ttgcaggaag tggcctttac gcctgcgaga aaagttttca tgcccgtctt tgtcgctgtg
     4261 cggcacgaca aggtgcggcg cttcgagacg acgcggcaga tgcttgatgt gctgtcgctg
     4321 gcaatcttct tcgtctgcgc cgtgtgcggg gcggcggcga aacccatcgt gctgctgatg
     4381 ttcgggcatc gatgggaggc ggcggtgccg gtcttcgcca tcattacgct gatggtaccc
     4441 gccgtggcgc tttacagcgt catcaacccg ctgctcaccg cggccgggcg caccaggctg
     4501 gtctcgctct atgcctgggc caatgtcgcc accatcgccg ccgccgcctg gtttgccgca
     4561 ccccacgggc tgctggctct ggcctgggcg ctggcggcgc gcggcatcac ggcggtggca
     4621 ttgttcgtgt tcgccatgcg ccaggggctg gagcgcccgg tggcgcccat tctgcgcctg
     4681 ctggtgctgc ccagcatcgc tttggccatt gcgcggctgg tctcctggct ggtgctaagc
     4741 gcgctgccgg agctagatct ggtcgcgcaa ttgatggtga cctcgggcat ttccgcctgc
     4801 attttcgcgg ccaccgcgct gctgatggcg ccgcgccgca tcaccggggc ggtgacacgg
     4861 ctttatggcg cgttgctggg cgcccagccc gctatataac aggcaatttt cttgccccat
     4921 cgcggcgttg ctggttgaat gggctggccc atgacctgtc catacacgcc cttcaccctg
     4981 ctgcagcccg ccaggcagaa tgctgccctg gtgctgacct cgccgcattc cggccggcgc
     5041 tatgacgagg cgtttctcgc ccaggcgcgg ctggatgcgc agagcctgcg ccggtccgag
     5101 gatagtttcg tggaggaatt gttcggcgcc ggccccgaac tcggcgtgcc gctgctggcg
     5161 gcggaatttc cccgcgcctg gtgcgacgcc aaccgcgagc cttgggagct ggaccccgcc
     5221 atgttcgcgg atagcctgcc cgaatatgcc aacaccacca gcccgcgcgt ggcggcgggg
     5281 ctgggcacgg tggcgcgcat cgtcggcgcc ggcgagccga tctatggccg caaattgcgc
     5341 ttcgctgagg ccaaggcacg tatcgagaca tgctggcgcc cattccatga ggcgctggcg
     5401 caatgcatcg aggatacggt ggcgcgcttc ggccattgtc tcgtgctgga ttgccattcc
     5461 atgcccaccc cgctcggccg catggcggcg cgggccgata tcgtgctggg ggacgggcac
     5521 ggtaccagct gtgg
//
LOCUS       DASQCV010000759         1526 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2645146, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000759 DASQCV010000000
VERSION     DASQCV010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2645146"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(228..304)
                     /locus_tag="VEQ16_11965"
     tRNA            complement(228..304)
                     /locus_tag="VEQ16_11965"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(268..270),aa:Arg,seq:tct)
     gene            complement(353..754)
                     /locus_tag="VEQ16_11970"
     CDS             complement(353..754)
                     /locus_tag="VEQ16_11970"
                     /inference="COORDINATES: protein motif:HMM:NF013996.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin family protein"
                     /protein_id="HYP64603.1"
                     /translation="MQRRNFGARALAGGALLASLPLAARAAEGGRLHNVVFTKDDYGH
                     WSGMESLHVPELTLSGQTLTVRTPHPMSPEHYIVSHTVVLADGTFLSRRTFAPTEQPV
                     STHTLPGGYKGEVRVTSTCNQHDFWLETLTV"
     gene            complement(833..1138)
                     /locus_tag="VEQ16_11975"
     CDS             complement(833..1138)
                     /locus_tag="VEQ16_11975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010512981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ETC complex I subunit"
                     /protein_id="HYP64604.1"
                     /translation="MRARIYQTPKSAMQSGLARTKRWILEFEPERQKLRDPLMGWTGS
                     DDMRQQLRLTFESKDEAIAYAEAENIPYDLEIPPARVKKPRLYADNFRADRKENWTH"
     gene            complement(1153..1229)
                     /locus_tag="VEQ16_11980"
     tRNA            complement(1153..1229)
                     /locus_tag="VEQ16_11980"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1193..1195),aa:Pro,seq:tgg)
     gene            complement(1248..>1526)
                     /locus_tag="VEQ16_11985"
     CDS             complement(1248..>1526)
                     /locus_tag="VEQ16_11985"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HYP64605.1"
                     /translation="PSLAADAGMLFPQVPQAPAEFWMKNTIIPLDIVFIGPDGKIISI
                     AENAVPYSLKPIPSGGTVEATLELQGGITAKDGISIGDKVVAKGLSGS"
BASE COUNT          276 a          482 c          469 g          299 t
ORIGIN      
        1 gacgcgcacc ggcacccgcc ggggcaaacg gagctacacc tattacagct gcgccggcac
       61 ctcgacgatg ggacattcag gcccgaaagg cctacctgcg gtccgtcgtc tcccgcatcg
      121 aggtcgatga cggaaaaatc cgcattgtcg gggaaaaagc cgcgttggcc gacatcattg
      181 ccggccgctc tcaggcgccc ggcgatgttc gcggttttgt ccgcaaatgg cgcgccctga
      241 tggagtcgaa ccatcggcct caagattaga agtctcgtgc tctatccagc tgagctaagg
      301 gcgcgcgtac cctcctgcta ccaagctcag ccggttgcag gcaagcgcgg cgtcagacgg
      361 tgagcgtctc cagccagaaa tcatgctggt tgcaggtact cgtcacccgc acctcgccct
      421 tgtagccgcc gggcagcgta tgggtggaga ccggctgctc cgtaggcgcg aatgtcctgc
      481 ggctcagaaa cgtgccgtcc gccagtacca ccgtatggct gacgatgtaa tgctcgggcg
      541 acatcgggtg cggcgtgcgc acggtcagtg tctggccgct cagggtcagc tccggcacat
      601 gcagcgattc catcccgctc caatggccat aatcatcctt ggtgaacacc acattatgca
      661 agcgtccgcc ttcagcggcc cgggcggcca gcggcaggct ggccagcagc gcgccgcctg
      721 ccagggctct tgctccaaaa ttccggcgtt gcatgagaca tctccttcaa cggtttcgga
      781 tgcctgtcat aatgggcatc ctttccgccg gaagaaggca cgtcacggca atttaatgcg
      841 tccagttttc cttgcggtcg gcgcggaaat tatcggcgta gagtctcggc ttcttcaccc
      901 gcgccggggg gatctccaaa tcatagggga tgttctcggc ctcggcatag gcgatggcct
      961 cgtccttgga ctcgaaagtg aggcggagct gctggcgcat atcgtccgag ccggtccagc
     1021 ccatcagcgg gtcgcgcagt ttctgccgtt cgggctcgaa ctccaaaatc cagcgcttgg
     1081 tgcgggccag gccggactgc atggccgatt tgggagtttg gtagatacgt gcccgcatga
     1141 acttctcctg actggtcggg gcgcccggat tcgaaccggg ggcctcttgt acccaaaaca
     1201 agcgcgctac caggctgcgc cacgccccgc tcaatgtgac gccgggctta gctgccgctt
     1261 aagcccttgg caaccacctt gtcaccaata ctgatgccat ccttggcggt gatgccgccc
     1321 tgcagctcca gcgtggcctc taccgtgccg ccggagggga tgggtttcag gctataaggc
     1381 accgcattct cggcaatgga gataattttc ccgtccgggc cgataaagac gatgtccagc
     1441 gggatgatgg tgttcttcat ccagaattcc gccggggctt gcggcacctg cgggaacagc
     1501 atgccggcat cagctgcgag cgaggg
//
LOCUS       DASQCV010000760         2940 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1485155, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000760 DASQCV010000000
VERSION     DASQCV010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2940
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1485155"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(201..914)
                     /locus_tag="VEQ16_11990"
     CDS             complement(201..914)
                     /locus_tag="VEQ16_11990"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HYP64606.1"
                     /translation="MCVLCTKPTRREFCAGTLLMPLALGKPRGGLLEPVLRLEPGAAP
                     SQVAVTLDACPGHFDPRVATALVNLRIPATIFVTSVWMKWNRDGLAYFLAHPDIFTLQ
                     NHGAKHLPPVLGDKPIYGLKVAGNFDAIGAEVINGAVSVQEATGKPPLWYRGAAGLYS
                     PEAIPFIESLGFKIAGYSLNSDQGASLPAASVAKRIEAAQDSDVIEGHINQPHRDSGA
                     GIATGLAQLQAKGMRFVTL"
     gene            complement(926..1858)
                     /gene="epsC"
                     /locus_tag="VEQ16_11995"
     CDS             complement(926..1858)
                     /gene="epsC"
                     /locus_tag="VEQ16_11995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase EpsC"
                     /protein_id="HYP64607.1"
                     /translation="MGSNTQTPGLSHAAQSTEGDLAAVVAGLRLAREVTHKIRHRGSV
                     RELPSRAALVKIRDGLLAALFPSHYGCPDLTDETIDYFVGDTLAQALAILTEQVRRDL
                     LFLPPEPDALPDTERAAAIVRAFAAQLPELRGVLAEDVLAAYQGDPAASSVAEVLIAY
                     PGMRAIIHHRLAHALHLLGAPLVARLLASISQADTGIDIHPQAQIGPRFFIDHGTGVV
                     IGQTAIIGANVRLYQHVTLGAKRFTEDENGMLVKGEPRHPIIEDDVVIYAGATVLGRI
                     TVGRGSTIGGNVWLTQSVPPGSFISQAQNRLTEV"
     gene            2172..>2940
                     /locus_tag="VEQ16_12000"
     CDS             2172..>2940
                     /locus_tag="VEQ16_12000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2849 domain-containing protein"
                     /protein_id="HYP64608.1"
                     /translation="MSLHVITANRLRDGISVWYAGAGNWAEHVTEAAAYDDAALDGAL
                     AEAQPADVALHVVDVRAVPAERGVGGLTPTEYREKIRATGPSVRADLPAGTWRNGAAL
                     PPLPSASSTSPYAGIYRYDEYDRDFLRQRAREFGEKVARRRSGELSEEEFVPLRLMNG
                     LYLQLHAYMLRIAIPYGVLSATQLRQLAYVARHYDRGYGHFTTRQNIQFNWLRLEDAP
                     AALAALAEADIHGIQTSGNCIRNVTTDEFAGASADEAV"
BASE COUNT          542 a          915 c          980 g          503 t
ORIGIN      
        1 cgtgaaggac ggcaaactcg ccttcgacgt cactgaagcc cccaccctcg ccttgcccaa
       61 gcctgaaacc gaaggcgacg acgagggcgg cgagaagacc caggaagaag tgacctaaga
      121 ggcttcgccc cttaacccct ccagggagca aagccctggt ggggtgcagg ggcaataccc
      181 ctgcctacac aataccccgc ctacaatgtc acaaaccgca tgcccttggc ttggagctgt
      241 gccaggccgg tggcaatgcc ggcgccgctg tcgcggtgcg gctggttgat gtggccttca
      301 atgacgtcgc tgtcctgggc ggcttcgatg cgtttggcca cgctggcggc gggcaaagag
      361 gcgccctggt cggaattcag ggagtagccg gcgattttga agccgaggga ttcgatgaag
      421 gggatggctt ccggactgta gaggccagcg gcgccacggt accagagagg cggtttgccg
      481 gtggcctcct gcacggaaac ggcgccgttg atcacttcgg cgccgatggc atcgaaattg
      541 ccggccactt tcagcccgta gatgggcttg tcgccgagca cgggcggcag atgcttagcg
      601 ccgtggtttt gcagcgtaaa aatatccggg tgggcgagga agtaggcgag cccgtcgcgg
      661 ttccatttca tccagaccga agtgacgaaa atggtggcag ggatgcgcaa atttaccagc
      721 gcggtggcaa cgcgcgggtc aaaatgaccg gggcacgcat ccagcgtgac ggccacctgg
      781 cttggcgcgg cacccggctc aagccgcagc acgggctcga gcagcccacc gcgcggctta
      841 cccaaagcca gcggcataag cagggtaccg gcgcagaatt cgcgccgggt cggtttcgtg
      901 cagagaacgc acatggggag cggccttaaa cctcggtcag ccggttttgc gcctggctga
      961 taaaactgcc cggcggcacg ctctgcgtga gccacacatt gccgccgatg gtcgagcccc
     1021 gcccgaccgt gatacgcccc agcacggtgg cgccggcata gatcaccacg tcatcctcga
     1081 tgatgggatg gcgcggctcg cccttcacta gcatgccgtt ctcgtcttcg gtgaagcgct
     1141 tggcgcccaa agtgacatgc tgatagagcc gcacattggc gccgatgatg gcggtctggc
     1201 cgatcaccac gccggtgccg tggtcgatga agaagcgcgg gccgatttgc gcctggggat
     1261 ggatgtcgat gccggtatcg gcctggctga tgctggccag tagccttgcc accaggggcg
     1321 cgccgagcag gtgcagcgca tgggcgaggc ggtgatggat gatggcgcgc atacctggat
     1381 aggcgatgag cacctcggcc acggaactcg ccgccgggtc gccctgatag gcggcgagca
     1441 catcctctgc cagcacgccg cgcaattccg gcagctgcgc ggcaaaggcg cgcacgatgg
     1501 cggcggcgcg ctcggtatcg ggcaaagcgt ccggctcggg cggcaggaag agcaaatcgc
     1561 gccgcacttg ctcggtgagg atggccagag cctgggccag cgtgtcaccg acaaaataat
     1621 caatcgtctc gtcggtgagg tccgggcagc cataatggct ggggaagagg gcggctagca
     1681 gcccgtcgcg gatcttcacc aaggcggcgc gcgagggcag ctcccgcacc gagccgcgat
     1741 ggcgaatctt gtgcgtcact tcgcgtgcga ggcgcagccc ggcgaccacg gcggcgaggt
     1801 caccttccgt gctctgcgcg gcgtggctga ggcccggcgt ctgcgtgttg ctgcccatgt
     1861 gactgtccta tggtgctgtg ttgactgaaa gctaggcacg gccagggcct ctgtaaatgt
     1921 gcggcacgca aggcagggcg gcgtggcagt gcgggctggc atggccctgt ggaaagaaca
     1981 ctccagcggc ggaagatagt ggaatatttt accccttcag cgccattaag gggaataaat
     2041 aaaccaatct ccacaaaaaa cctgccctgt aaaaaaatac atcctataat gtctttcccg
     2101 gcctggacga gcgctaaaat tgctttatct ggcgtccggg ttttgagtgt aggaaagcga
     2161 cgggatcaaa tatgtccttg catgtgatta ccgccaaccg gctgcgtgac ggcatctccg
     2221 tctggtatgc gggggcggga aactgggccg agcatgttac cgaggctgcc gcctatgatg
     2281 acgcggcgct ggacggcgcg ctcgcggaag cgcagcccgc cgatgtggcg ctgcatgtgg
     2341 ttgatgtgcg cgccgtgccg gccgagcgtg gcgtgggcgg gctgaccccc acggaatatc
     2401 gcgagaaaat ccgcgccacc ggcccctccg tgcgcgccga cctgccggcc ggcacctggc
     2461 gcaatggcgc ggcgctgccg cctttgccgt ccgctagctc tacttcgcct tatgcaggca
     2521 tctaccgcta cgacgaatat gaccgcgact tcctgcgcca gcgggccagg gagttcggcg
     2581 agaaggtggc gcgccgccgc tcgggtgagc tgtccgagga ggaattcgtc ccgctgcgcc
     2641 tgatgaacgg gctgtatctg cagctccacg cctatatgct gcgcatcgcc atcccctatg
     2701 gcgtgctcag cgccacgcag ctgcgccagc tcgcctacgt ggcccggcat tatgaccgcg
     2761 gctatggcca tttcaccacg cgccagaaca tccagtttaa ctggctgcgc ctcgaagatg
     2821 cccccgctgc cctggctgcc ttggccgaag ccgatatcca cggcatccag acctccggca
     2881 attgcatccg caacgtcacc accgacgaat tcgccggcgc ctcggccgac gaggcggtgg
//
LOCUS       DASQCV010000761         2279 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2148948, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000761 DASQCV010000000
VERSION     DASQCV010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2279
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2148948"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..535
                     /locus_tag="VEQ16_12005"
     CDS             <1..535
                     /locus_tag="VEQ16_12005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007422146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HYP64609.1"
                     /translation="IKLAPEPAYPRPKDPEWAFLVTGYSECIDSFFAYGLFEMARRSG
                     FFPDKLVETFEPVVQEEGRHILFFTNFVAWYRANMSWWRRILFELKVARVYAFLAWER
                     MGIASEVDGMENADANFTVSGSNSLVDELDPARLLDICLEEDKRRMAGYDTRLKRPTT
                     VPFVARVVRLVVRPKKT"
     gene            532..1515
                     /locus_tag="VEQ16_12010"
     CDS             532..1515
                     /locus_tag="VEQ16_12010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase
                     domain-containing protein"
                     /protein_id="HYP64610.1"
                     /translation="MSQKIKILPAALALAGIAVITGLVIYFGAGDVLRVLTSVRPLGF
                     GAYILAQIGITLGLGLCWRMLLRSRQRGSFWLCVWGRLVRDATGEFLPFSQVGGFFLG
                     ARVIGLGGVAMADAIASTLGDVTTEFLAQLVFVAIGLVVFARKVPGSELVMPVAIGLC
                     VALMAGVGLIVAQRGSGTKLFRALALKIAGTVGEGAAANFDRLQAALDIMYGERDRLA
                     WCALFHLGCWFGTATASYIGFHALGVPLSWPDAMCIEAILHAIMALAFFIPGRAGVQE
                     AAYTVLGGLFGIPPEVALSLSLLRRARDFVIAVPVLIIWQGLEAKKLKTAL"
     gene            1617..1874
                     /locus_tag="VEQ16_12015"
     CDS             1617..1874
                     /locus_tag="VEQ16_12015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HYP64611.1"
                     /translation="MSLLGWIVLGLIAGWIASHIVDNGGKGPLLDIVLGIVGALVGGF
                     IFNALGALPVTGFNLYSLVVAIIGSVVVLVLYHAIAGRRVL"
     gene            complement(1879..>2279)
                     /locus_tag="VEQ16_12020"
     CDS             complement(1879..>2279)
                     /locus_tag="VEQ16_12020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase type 11"
                     /protein_id="HYP64612.1"
                     /translation="EQAENTRRALREAWRLLKDDGRLIVVAPNRRGIWAYMESTPFGH
                     GQPYSETQLSRLLAGLFFHVEHQDAALFAPPLDWPPALRLFNLWEKTGSTLAPQFAGL
                     TIAEATKEVHGIIPARAAASGRRVLVDAGR"
BASE COUNT          350 a          654 c          781 g          494 t
ORIGIN      
        1 catcaagctc gcgcccgagc cggcctatcc gcgtccgaag gacccggagt gggccttcct
       61 cgtcaccggc tattcggaat gcatcgacag ctttttcgcc tatgggctgt tcgagatggc
      121 gcgccgctcc gggtttttcc ccgacaagct ggtggagacc ttcgagccgg tggtgcagga
      181 ggaggggcgg catatcctgt tcttcaccaa tttcgtcgcc tggtaccgtg ccaatatgag
      241 ctggtggcgg cgcatcctgt tcgagctgaa agtggcgcgg gtctacgcgt tcctggcctg
      301 ggagcggatg ggcatcgcct cggaagtgga cggaatggag aatgccgacg ccaatttcac
      361 cgtgagcggc agcaactcgc tcgtcgacga gctggacccg gcgcggctgc tggatatttg
      421 cctggaagaa gacaagcgcc gcatggcggg gtatgatacc agattgaagc gccccacaac
      481 cgtgcccttc gtggcgcggg tggtgcggct tgttgtgagg ccgaagaaaa cttgagtcag
      541 aagattaaaa ttctacccgc cgctttggcg ctggcgggca tcgctgtcat cacgggactg
      601 gtgatctatt ttggggccgg ggacgtgctg agggttctga cctcggtacg gccgctcggt
      661 ttcggcgcat atatcctggc gcaaattggc attacgctgg ggctgggctt gtgctggcgc
      721 atgctgctgc gctcgcgcca gcgcggcagc ttttggctgt gcgtgtgggg gcggttggtg
      781 cgcgatgcca ccggtgagtt cttgcccttc agccaggtcg gcggattctt cctcggcgcc
      841 cgtgtcattg gcctgggcgg ggtggcgatg gctgatgcca tcgcctcgac cctgggcgat
      901 gtgacgacgg aatttctcgc ccagcttgtg ttcgtcgcta tcgggctcgt tgtgttcgcg
      961 cgcaaggtgc cgggttccga gctggtgatg ccggtggcca tcgggctgtg cgtagcgctg
     1021 atggcgggtg tggggctcat cgtggcgcag cgcggctcgg gcaccaaatt attccgtgct
     1081 ctggcgctga aaatcgctgg cacggtgggc gagggagcgg cggcgaattt cgaccggctg
     1141 caggcggcgc tcgacatcat gtatggcgag cgcgaccggc tggcctggtg cgccttgttc
     1201 catctcggct gctggttcgg cacagcgacg gcctcctata tcggcttcca tgcactgggc
     1261 gtgccgctct cctggcccga tgccatgtgc atcgaggcga ttttgcatgc catcatggcg
     1321 cttgccttct tcattcccgg ccgtgccggc gtgcaggagg ccgcttatac ggtgctgggc
     1381 gggctgtttg gcatcccgcc cgaggtggcg ctttccctct cgctgctgcg gcgggccagg
     1441 gatttcgtca tcgccgtgcc ggtgctcatc atctggcagg ggctggaggc gaaaaagctc
     1501 aagaccgcac tgtgaccatg agcggttcat gaaaaacccg taagattctt gttccgcgcc
     1561 cgttcagagc catgtcttgg ctcaggtacg aggctcaggt acgaggagga acaaaaatgt
     1621 ctctgcttgg ctggattgtt ttgggactca tcgcgggttg gattgccagc catatcgtcg
     1681 ataatggcgg caaggggccg ctgctcgata tcgtgctcgg catcgtcggc gcattggtgg
     1741 gcggattcat cttcaacgcc ctgggcgcgc tgcctgtgac cggattcaac ctctattcgc
     1801 ttgtcgtcgc catcatcggc tcggtggttg tgctggtgct ctaccacgcc atcgcggggc
     1861 gacgggtttt atagggagtt agcgtccggc atccactagc acgcgccggc cggaggcggc
     1921 ggcgcgcgcg gggatgatgc cgtgtacctc cttggtggcc tcggcgatgg tcaagccggc
     1981 aaattgcggc gccagggtgc tgccggtttt ctcccataga ttgaacaggc gcaaagcagg
     2041 gggccaatcc aaaggcggag cgaaaagcgc cgcatcctgg tgttcgacat ggaagaacag
     2101 gccggcgagc aggcgggaga gctgggtttc ggaataaggc tggccatggc cgaagggcgt
     2161 gctctccata taggcccaga tgccgcgcct gttgggtgcc accacgatca gcctgccgtc
     2221 atccttcagc agccgccaag cctcgcgcaa agcacgcctg gtattttccg cctgttcca
//
LOCUS       DASQCV010000762         1640 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1653504, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000762 DASQCV010000000
VERSION     DASQCV010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1653504"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(71..1096)
                     /locus_tag="VEQ16_12025"
     CDS             complement(71..1096)
                     /locus_tag="VEQ16_12025"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000701 - purine-specific mismatch base
                     pair DNA N-glycosylase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HYP64613.1"
                     /translation="MRQISSSPQARALLSWYATHRRHLPWRAAPGETADPYHVWLSEI
                     MLQQTVVATVRPYYAKFLAAYPRIENLAAASVEEVCAHWAGLGYYARARNLHKCAQAV
                     AELGAFPQTIEALRTLPGVGPYTANAIGAIAFKLPVLPVDGNIERVASRIFAITTPLP
                     AGKPEIAAAAQAFIQDKAAQAAPGDFAQALFDLGATICTPKSPNCPACPWKSHCHAHK
                     EGIAASLPARAKKAARPHRIGTAYVLLDAADEVLLLRRPARGLLGGMLALPDEPPVKG
                     RWRDAGSIEHVFTHFTLTLNVQVRRTRNLPAGALSAPAASAPLPSVMRKALDAGRRAL
                     NDITNGE"
     gene            1075..1572
                     /locus_tag="VEQ16_12030"
     CDS             1075..1572
                     /locus_tag="VEQ16_12030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HYP64614.1"
                     /translation="MKKKSVAQAHVLPAPEATRNHTQEAPRNYAPRGIAALLAPITRP
                     VFRRRAPAAAQLLADWPQLAGPELAARAVPVKFAGGTLTLGCTGPTAMELQFAETQIM
                     ARLNLALGHNMVEQLRFVQQSPRLPSAPAPRGRPRPVAPPEDLPPGELGQALARLYQG
                     IKTRG"
BASE COUNT          277 a          553 c          542 g          268 t
ORIGIN      
        1 gaacgggcta gggccctccg gccatgggat atcgacatgc gtatctatgg ccagtaggcc
       61 attatgcgga tcactctcca ttagtgatat cgttgagcgc tctgcgcccg gcgtcaagcg
      121 cctttcgcat cacgctgggc aggggcgcgc tggcggcagg ggcgctgagc gcgcccgcgg
      181 gcagatttct ggtccgccgc acctgtacgt tcagcgtcag ggtgaaatgg gtgaagacat
      241 gctcgatact gcccgcatcc cgccaccgcc ccttcaccgg cggctcgtcg ggcaaagcca
      301 gcatcccgcc gagcaacccg cgcgccgggc ggcggaggag cagaacctcg tccgccgcgt
      361 ccagcagcac ataggccgtg ccgatgcggt gcggccgcgc cgctttcttg gcccgcgccg
      421 gcaggctggc ggcgatgccc tccttgtgcg cgtggcaatg ggacttccag gggcaggcgg
      481 ggcaattggg cgatttcggc gtgcagatgg tggcgccaag atcgaacaaa gcctgggcaa
      541 agtctcccgg cgcggcctgc gccgccttgt cctggataaa agcctgggcc gcggcggcga
      601 tttctggctt gccggcggga agcggcgtgg tgatggcaaa gattcgcgac gcgacgcgct
      661 ctatattccc atccaccggc agcacaggca gtttgaaggc aatggcgccg atggcattgg
      721 ccgtataggg gccgacgccc ggcaaggtcc gcagcgcctc gatggtttgc ggaaatgcgc
      781 ccagctccgc caccgcctgc gcgcatttat gcaggttgcg cgccctggcg taatagccga
      841 gccccgccca atgggcgcac acctcctcga cgctcgccgc cgccagattc tcgatgcggg
      901 gatacgcagc caaaaatttg gcgtaatagg ggcgcacggt ggccaccacc gtctgctgca
      961 gcatgatctc ggaaagccag acatggtacg gatcggctgt ctcgccgggc gctgcgcgcc
     1021 agggcagatg gcggcgatgc gtcgcgtacc aggaaaggag tgcccgtgcc tggggtgaag
     1081 aagaaatctg tcgcacaggc gcacgttctg cccgcgcccg aagcgacgcg caaccatacg
     1141 caagaggcgc cacgcaacta tgcgccgcgc ggcattgccg ccttgctggc ccccatcacc
     1201 cgcccggttt tccgccgccg cgccccggcc gccgctcagc ttctggcgga ctggccgcaa
     1261 ctggccgggc cggagctggc cgctcgcgcc gtgccggtga aattcgccgg cggcacgctc
     1321 acgctgggct gcaccggccc caccgccatg gagctgcaat tcgccgagac gcagatcatg
     1381 gcccggctca acctcgcttt gggccataat atggttgagc agctgcgctt cgtgcagcaa
     1441 tcgccgcgtt tgccgagcgc cccggcgccg cgcgggaggc cgcgcccggt ggctccccct
     1501 gaggatttgc cgcccggcga gctgggccag gctttggccc gcttatacca gggcataaaa
     1561 acccgtggat aactccgatt cctgattcga ctctgccggg aaaatgccgc tacactatat
     1621 ctaggagaaa aaatgccaat
//
LOCUS       DASQCV010000763         1757 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2811694, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000763 DASQCV010000000
VERSION     DASQCV010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2811694"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..222)
                     /locus_tag="VEQ16_12035"
     CDS             complement(<1..222)
                     /locus_tag="VEQ16_12035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007438728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HYP64615.1"
                     /translation="MSKDLKSIIENAWERRSDVSPTTQGSVRSAVESVLEQLDSGQVR
                     VAEPDGEEWIVNQWVKQAVLLSFRIHPNQL"
     gene            362..1315
                     /locus_tag="VEQ16_12040"
     CDS             362..1315
                     /locus_tag="VEQ16_12040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64616.1"
                     /translation="MTSSPLSLSAKLAAAPGRGWLAVAAMLADLAFETDPMGCFTAFG
                     PGKVLGQPAGALLGVELATLLAGGSAEEEELSASQFRAIVTTICTECVAWHGKVRLAR
                     IDGDSAVYRLALAPRILGSSVIGTYGLLFDMETPELTLPGSHAGHDSDPALTRSTMLD
                     AETGLWSGRTFGEEIARRFDRLDVEGLPGTLLYLGFSRATAKFRSAVAIRLAEELRDI
                     VRPTDLLGRIDETTIGLWCDGMDHLTGGERAAKFCISLPAILPERAIITVGVAPRWPG
                     SGDDPQSVQEHAAVALRLADMAAARANAEPPAGAWRVWQRD"
     gene            complement(1321..1734)
                     /locus_tag="VEQ16_12045"
     CDS             complement(1321..1734)
                     /locus_tag="VEQ16_12045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64617.1"
                     /translation="MNTPSDLNAAVAKAVATVPDCIAVGYIDVGSGFLLAIKTVDSHP
                     RDVIDLVAAATADLFQGTNVSAVEAIWKQARGAETNRHYFQEFIINSDNAIHVFIRGK
                     KYQDYVSVFVCRNTANIGMVLAKSRMATQVIEEVM"
BASE COUNT          309 a          583 c          540 g          325 t
ORIGIN      
        1 aagctggttg ggatggatgc ggaaggagag cagcacggcc tgcttcaccc attgattcac
       61 gatccactcc tcgccgtccg gctcggccac gcggacctgg cccgaatcca gctgctccag
      121 cacgctctcc acggcgctgc gcacgctgcc ctgggtcgtc ggggaaacat cggaacgccg
      181 ctcccaggca ttctcgataa tcgatttcag atccttgctc atgtgcgcct cgaaaaacct
      241 ctaaacatga cagcaacatg aacgtttgcg ccgcacaatg tcaacgcggt gacgtttccg
      301 atcgctgatt cttgtgattc tagttaagag attattcatg cccgccgcct aaaaccgcgc
      361 catgacaagc tctcccctct cgctatcagc aaagctggcc gcggcccccg gccgcggctg
      421 gctggctgtt gccgccatgc tggcggatct cgctttcgag accgacccga tgggctgttt
      481 cacggcgttc ggccccggca aagtactcgg ccagccggcg ggcgcgctgc tgggggtcga
      541 gctggccacg ctgctggccg gcggctctgc cgaggaggaa gagctcagcg ccagccagtt
      601 ccgcgccatt gtcaccacca tctgcaccga atgcgtggcc tggcacggca aggtgcggct
      661 ggcccgcatc gatggggata gcgccgtcta ccggctcgct ttggcgccgc gcatcctggg
      721 cagcagcgtc atcggcactt acgggcttct gttcgacatg gagacgcccg agctgaccct
      781 gcccggcagc catgccggcc atgacagcga ccctgccttg acccgcagca cgatgctcga
      841 tgccgagacc ggcctctggt ccggccgcac cttcggcgag gaaattgctc gccgcttcga
      901 ccgtctggat gtcgaggggc tgccgggcac cctgctttat ctgggttttt cccgcgcgac
      961 ggcgaaattc cgcagcgctg tcgccatccg tctcgccgag gagctgcgcg acatcgtccg
     1021 ccccaccgat ctgctgggcc gcatagacga gactacgatc gggctgtggt gcgacggcat
     1081 ggaccatctc accggcggcg agcgcgcggc caaattctgc atcagcctgc cagccatcct
     1141 gcccgagcgc gccatcatca ccgtgggtgt ggcgccgcgc tggccgggca gcggggacga
     1201 cccgcaatcc gtgcaggagc atgccgccgt ggcgctgcgc ctggcggaca tggccgccgc
     1261 gcgcgccaat gccgagccac cggccggcgc ctggcgcgtc tggcagcgcg attaggccgg
     1321 ctacatcacc tcttcgatca cctgcgtcgc catacgggat ttggccagta ccatgccgat
     1381 gttggccgtg ttgcggcaga cgaacacgga cacgtaatcc tgatatttct taccccggat
     1441 aaagacgtgg atggcattat cggaattgat aatgaattcc tggaaataat gccgattcgt
     1501 ctcggcaccg cgggcttgct tccagatcgc ctcgaccgcg ctgacattcg tgccctgaaa
     1561 caaatccgcg gtggcagcgg cgaccagatc gatgacgtcg cgcgggtggg aatcgaccgt
     1621 cttgatggcg agcaggaaac ccgatcccac atcgatatag ccgacagcaa tgcaatcggg
     1681 aaccgtggca acggctttcg caacggcggc gttgaggtcg gaaggcgtat tcatggatgg
     1741 tgcatacctt tacgtgc
//
LOCUS       DASQCV010000764         1521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_989632, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000764 DASQCV010000000
VERSION     DASQCV010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1521
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_989632"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            48..1088
                     /locus_tag="VEQ16_12050"
     CDS             48..1088
                     /locus_tag="VEQ16_12050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64618.1"
                     /translation="MNAKKLCALGAALALTGTAAAQYQAPPYPPPQAPVYQQPAYQAP
                     QAPAYQQPAPAYQQPQAPAYQQPQAPAYQQPQAPPYQQPQAPAYQQPQAPPYQQPQAP
                     PYQQPQAPPPGYAPPPAYAPPPAYPPPPPPYQPYSSNPAASAQAQQGIRYHPWRIQIE
                     GGYSITQGSTVKTLLNDGGSGGLGITWFPTAAIPLGFRVDGSYTSHPQTLHALDLASQ
                     STNQNIADGYTDIYGGDLDAEIDLHLGTRSREYFFGGIGWYRERTTLKSVTYQQGTIC
                     WFYCYQGYYPVYSNAQTSTTAWLNSWNAGIGFEFPLGDPATFFIDGRFLRIKQPQGGY
                     WDFIPIRVGIRF"
     gene            complement(1046..1234)
                     /locus_tag="VEQ16_12055"
     CDS             complement(1046..1234)
                     /locus_tag="VEQ16_12055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64619.1"
                     /translation="MTLVTALLILAAVLVAAALAVLSSIAAIAEVLPPRPGQVEESPG
                     PTAAAQNRMPTRIGMKSQ"
BASE COUNT          289 a          530 c          450 g          252 t
ORIGIN      
        1 gtcatcggaa tactggggga ctgcgcctca ttggcaggga tgacagcatg aacgcgaaga
       61 aactgtgcgc acttggagct gccctggcgc tgacggggac ggcggcggcc cagtatcagg
      121 cgcctccata tccgccccct caggcaccgg tttatcaaca accggcatac caggcgccgc
      181 aagccccggc ctaccagcag ccggccccgg cctatcagca gccgcaggcc ccggcctatc
      241 agcagccgca ggcgcccgcc tatcagcaac cgcaggcgcc cccgtatcaa cagccgcagg
      301 cgcccgccta tcagcaacct caggcgcccc cctatcagca gccccaggcg cccccgtatc
      361 agcagccgca ggcgccgccg ccggggtacg cgccaccgcc agcgtacgcg cccccgccag
      421 cgtacccgcc gccgccacca ccgtatcagc cttattcgtc aaatcccgca gcctccgccc
      481 aggcgcaaca ggggattcgc taccatcctt ggcggataca gattgagggc ggctacagca
      541 tcactcaggg cagcaccgta aagacgctgt tgaatgacgg cggaagcggt ggactcggaa
      601 ttacctggtt ccccacggct gccattccgt tgggcttccg cgtcgatggc agctacacca
      661 gtcatccgca gaccctccac gcactcgacc tagcctccca gtccaccaat cagaacattg
      721 ccgatgggta caccgacatc tacggcggag atctcgacgc ggagatcgac ctgcacctcg
      781 gcacgcgctc gcgcgaatac ttcttcggag gcattggctg gtaccgggag agaacgacgc
      841 tgaaaagcgt gacgtaccaa cagggaacca tctgctggtt ctactgctac cagggttact
      901 accccgtgta ctccaacgcg cagacgagca ccaccgcctg gctgaattca tggaacgcag
      961 gcatcgggtt cgagttcccg ctcggggatc cggcgacttt cttcatcgac ggccgctttc
     1021 tgcgcatcaa gcagccgcag ggtggttact gggacttcat cccgatacgt gttggcatcc
     1081 ggttctgagc cgcagcggtt gggcccggag attcctcgac ctgcccgggc cgcggcggca
     1141 agacctcggc gatcgccgcg atgctgctga gcacggcaag cgcggccgcc acgagtactg
     1201 ccgcgaggat caacagagca gtcaccagcg tcatctgagt gatctcctta tcgctcctga
     1261 ggaatcaggt tcgggcgtaa ggatcacctg aaggcgggcg ccctcttcct aaagggggtg
     1321 tcgatgctag agcagttgcg ggagccgacg cgcggccgcc gctcgtcgaa tcacgccacg
     1381 ctgtcggtgt cgtctccgtg cccttcgagc acttctgcca gcgcgcggca ggcatctgtc
     1441 acggtgaaaa tacctacgag cttgtcgtgc ttggtcacga tcgccgagcc aatgcggtta
     1501 tctgccatgg tgcgggcgac g
//
LOCUS       DASQCV010000765         3052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_492366, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000765 DASQCV010000000
VERSION     DASQCV010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3052
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492366"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            116..391
                     /locus_tag="VEQ16_12060"
     CDS             116..391
                     /locus_tag="VEQ16_12060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013635087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal/formaldehyde-sensitive transcriptional
                     repressor"
                     /protein_id="HYP64620.1"
                     /translation="MRYAENEKRKLANRLSRVRGQIEAMQAALEKDASCTALLQQAVA
                     CRGAMDGFIGMVIEHHVRQHVAGPENTEEGRAAAVEELIKVVHAYLT"
     gene            582..1538
                     /locus_tag="VEQ16_12065"
     CDS             582..1538
                     /locus_tag="VEQ16_12065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007439123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HYP64621.1"
                     /translation="MTREDSRHSNAVLDAVRSPEKAAASSVVASWRRSALYHRLDPTD
                     AAKREQVDGSTLDQLCDAHGSLLAVARPILDEMFRAVGRSGCCVILSNEHGVILEERL
                     EPGDLPAFASIGLVTGGRWSEAEEGTNGIGTCLYEGQPVTIHRGQHFASRNIGISCMD
                     APVHDPHGRLLAALDVSSCRYDHDTAAAGMIAVLVRDAARRIERDYFCRHFAGARIIF
                     LGDAPEAGMALLAVDQDDLVLGASRGARLNLRLTDDMLATPRPLAQLLGSGATASFDD
                     GERAVLRRALASASGNASKAARLLGVSRATLYRRMAQAKLRR"
     gene            1683..>3052
                     /gene="adh"
                     /locus_tag="VEQ16_12070"
     CDS             1683..>3052
                     /gene="adh"
                     /locus_tag="VEQ16_12070"
                     /EC_number="1.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007439152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HYP64622.1"
                     /translation="MDTLVQDRGMLKAPFAARYDNFIGGRWEAPRAGRYFDNLSPITG
                     KPVGQIARSDAADIEAALDAAHKAKDGWGHTPVAERALILNRIADRMEANLEQLARAE
                     TWDNGKPIRETMAADIPLAIDHFRYYAGAIRAQEGSLSEIDADMVAYHFHEPLGVVGQ
                     IIPWNFPLLMAAWKLAPALAAGNCVVLKPAEQTPASIMVWAELVGDLLPPGVLNIVNG
                     FGLEAGKPLASSSRIAKIAFTGETTTGRLIMQYASENLIPVTLELGGKSPNIFFEDVA
                     REDDDFLDKAIEGFVMFALNQGEVCTCPSRALIHESIYERFMDRALKRVAAIKQGNPL
                     DPETMIGAQASSEQREKILSYFDIGHQEGAEVLIGGEAASLGGVFADGYYVKPTVLKG
                     HNRMRVFQEEIFGPVVCVTTFKDEDEALVLANDTLYGLGAGIWSREANICYRFGRGIK
                     AGRVWT"
BASE COUNT          560 a          924 c         1013 g          555 t
ORIGIN      
        1 tggtagatcg cgggttcatg tggtcctgct gaaaaaatta cggattgccg actccggctg
       61 ctgccggaag acggttgcgg gatatacccg cggggggtat atagtcaagc ccagaatgcg
      121 atatgcggaa aacgaaaaac gcaagctcgc caaccggctg agccgggtgc gcgggcagat
      181 tgaggccatg caggcggcgc tggaaaagga cgcctcctgc acggccctgc tgcagcaggc
      241 ggtggcctgc cgcggcgcca tggatgggtt catcggcatg gtcatagagc atcatgtgcg
      301 tcagcatgtg gctgggccag agaatacaga ggaaggccgc gccgccgcgg tggaggaact
      361 gatcaaggtg gtgcatgcct acctgacgtg agttgcacgg ccggggaggc acatgatggg
      421 tggaaggggc cgaattggcc cggcgggcaa ggacgctgac gcgtggtcat atcggtgata
      481 tatggaccag cgggttgcgc ctcggaaagc gggcgttagt tgctcccctg cccactttga
      541 cgcgcccgcg cgtgagacgt agcctcaaag gaggagacag gatgacccgc gaggactccc
      601 ggcactcgaa cgccgtgctt gatgccgtcc gttcccccga gaaggcggcg gcatcgtctg
      661 tcgtcgcgtc ctggcgccgc tccgctctgt atcatcggct cgaccccacc gacgcggcga
      721 agcgtgagca ggtcgatgga tccaccctgg accagctgtg cgacgcgcat ggttcccttc
      781 tcgccgtggc caggccaatt ctggacgaga tgttccgtgc cgtcgggcgc tcgggctgct
      841 gcgtcatcct cagcaatgag cacggggtca tcctggagga acgtctggag ccgggagatc
      901 tcccagcctt cgccagcatc ggcctggtga cgggcggccg ctggagcgag gcggaggaag
      961 gcaccaacgg catcggcacc tgcctgtacg agggccagcc tgtcaccatc catcgcggcc
     1021 agcatttcgc gtcccgcaat atcggcatca gctgcatgga cgcgcccgtg catgatccgc
     1081 acggccgcct cctggcggcc ctggatgtgt cgagctgccg gtacgaccat gacactgcgg
     1141 cagccggcat gattgcggtt ttggtgcgcg acgcagccag gcggatagag cgcgattatt
     1201 tttgccgcca tttcgccggc gcccgcatta ttttcctggg cgatgcgccg gaagcgggca
     1261 tggccttgct cgcggtcgac caggacgatc ttgtgcttgg cgccagccgc ggcgccaggc
     1321 tgaacctgcg cctgacggac gacatgctcg ccaccccgcg tccgttggcg cagctgctgg
     1381 gctccggcgc cacggcgtcc tttgatgatg gcgagcgcgc cgtgctgcgg cgcgcccttg
     1441 ccagcgccag cggcaatgcg agcaaggcgg cccggctgct gggcgtcagc cgggcgacac
     1501 tttaccgccg catggctcag gccaagctgc gccggtaggc ggtatttttg caactccacc
     1561 tgtctcatcc gtgagacagg tcgcggcagc aacgctcgca cagcactttc ttcccgcgca
     1621 gcctggcggc agactcccca gcataaaccc ggcgctaaag ccagggtaag gaggaccagg
     1681 aaatggatac gcttgttcag gaccgtggaa tgctgaaggc acctttcgcg gcgcgttacg
     1741 acaatttcat cggcggcagg tgggaggcgc cccgcgccgg gcgctatttc gataatctct
     1801 ctcccatcac cggcaaaccg gtgggacaaa tcgcccgctc cgacgcagcg gatatcgagg
     1861 ccgcgctcga cgccgcgcac aaggccaagg atggctgggg ccacacaccg gtggccgagc
     1921 gcgcgctgat cctcaaccgc atcgccgacc ggatggaggc gaatctcgaa cagcttgccc
     1981 gtgccgagac atgggataat ggcaagccga tccgcgaaac catggccgcc gacattccgc
     2041 ttgccatcga ccatttccgt tattacgcgg gcgcgatccg cgcccaggaa gggtcgctca
     2101 gcgaaatcga cgcggacatg gttgcttacc atttccatga gccgctcggc gttgtcgggc
     2161 agatcattcc ttggaatttc ccgttgctca tggccgcctg gaagctcgcc ccagcgctcg
     2221 cggcgggcaa ttgcgtggtg ctgaagcccg cggaacagac gccggcttcc atcatggtct
     2281 gggcggagct ggttggcgat ctgctgccgc cgggcgtgct gaatattgtc aatgggttcg
     2341 gtctcgaagc cggcaagccg ctggcgtcat cgagccggat cgccaagatt gccttcaccg
     2401 gcgaaacgac gaccggccgc ctgatcatgc aatatgcgag cgagaatctg attcccgtca
     2461 cgctcgagct tggcggcaag tcgccgaata tcttcttcga ggatgtggct cgggaagatg
     2521 atgatttcct cgacaaggcc atcgaggggt ttgtgatgtt cgcgctcaac cagggcgagg
     2581 tttgtacctg tccgagccgg gcgctgattc acgaatcgat ctatgagcgt ttcatggacc
     2641 gcgccctcaa gcgcgtggcc gcgatcaagc agggcaaccc tcttgatcca gagacgatga
     2701 tcggcgccca ggcctcttcg gaacagcgcg agaaaatcct gagctatttc gatattggcc
     2761 accaggaagg agcagaagtg ctgattggcg gtgaggcggc gtccctcggc ggagtgtttg
     2821 ccgatggcta ttatgtcaag ccgacggtgc tgaaggggca taaccggatg cgggtcttcc
     2881 aggaggagat ttttggccct gttgtgtgcg tcaccacctt caaggatgaa gatgaagcgc
     2941 tggtacttgc caatgacacg ctgtacggcc tcggcgccgg catatggagc cgtgaagcca
     3001 atatatgcta ccgattcggg cggggcataa aggcggggcg cgtctggacc aa
//
LOCUS       DASQCV010000766         1537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1982789, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000766 DASQCV010000000
VERSION     DASQCV010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1982789"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1127
                     /locus_tag="VEQ16_12075"
     CDS             <1..1127
                     /locus_tag="VEQ16_12075"
                     /inference="COORDINATES: protein motif:HMM:NF014486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit II"
                     /protein_id="HYP64623.1"
                     /translation="AALGAACLLIVDPVCAPMAALLYPAGVSLYSVALVAWPAFLMPS
                     ASQETRACRAGYLYALAGWIGSALGIGMGRNLHHVPPAFVALAAALFIVPWMLDAIAS
                     GRLSKSVHIEALAVVCVLAAAFALTLIVQPTIRPFASVPVEDPIERGRRAYIAEGCIN
                     CHSQYVRPNTADVAMWGPATTLDELRRQRPPLIGNRRQGPDLSRVGARRSPLWLQMHF
                     IQPRDVSYASPMPPYDYLFRNRRGDDLVAYLSSLNDAAHWKDVAGWQPSPAAWDLAAK
                     ADGAALFRQHCATCHTADGAARRKWSARFHRLPPDLALDRLEHLSPNASPSEARTEIA
                     RIARFGIQGTDMPGREYLPDVQIAAIADYVLVQRESRLKR"
     gene            1182..1463
                     /locus_tag="VEQ16_12080"
     CDS             1182..1463
                     /locus_tag="VEQ16_12080"
                     /inference="COORDINATES: protein motif:HMM:NF012911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HYP64624.1"
                     /translation="MVLHFLIRGRVQGVGFRWFVHREASELDLRGWVRNTEDGDVEVV
                     AAGSTEDLAELRESLRRGPRGSRVDRLLEHYLDDKEAKNLDSFRIEGAW"
BASE COUNT          241 a          539 c          447 g          310 t
ORIGIN      
        1 tcgccgccct cggcgcagca tgtctgctga ttgttgatcc cgtctgcgcc cccatggcgg
       61 cgcttcttta ccccgccggt gtttcgctct actccgttgc gctggtcgcg tggcccgcgt
      121 tcctcatgcc ctccgcctcg caggaaaccc gcgcctgccg cgcgggctat ctctacgccc
      181 tcgcgggttg gatcggctcc gcgcttggca ttggtatggg acgcaacctg caccacgttc
      241 ctccagcatt cgtggccctg gctgcggcgt tattcatcgt gccctggatg ctggatgcga
      301 tcgcatccgg ccgcctgagc aaatccgtcc atatcgaggc tcttgctgtt gtctgcgtgc
      361 tggcggcggc gtttgcgctc acgctgattg tccagcccac catccgtccc ttcgccagcg
      421 ttccggtgga agatcccata gaacgcggcc gccgcgccta catcgccgaa ggctgtatca
      481 actgccattc gcaatacgtc cgcccaaaca cggccgacgt ggccatgtgg ggcccggcta
      541 caaccctgga cgaactccgc cgccagcggc cgccgctcat tggcaaccgc cgccagggcc
      601 ccgacctgag ccgcgtgggc gcgcgccgct caccgctgtg gctgcagatg cacttcatcc
      661 agcctcgcga cgtaagctat gcgtctccca tgccgcccta cgattacctg ttccgcaacc
      721 ggcgcggcga cgacctggtg gcctatcttt ccagtttgaa tgatgcggcg cactggaagg
      781 atgtagccgg gtggcagcct tcgccggccg cgtgggatct ggcggcgaaa gcggacggcg
      841 ccgccctgtt ccgccagcac tgcgccacct gccacactgc ggacggcgca gcccgcagaa
      901 aatggtcagc gaggttccac cgcctcccgc ccgatctcgc ccttgaccgg ctggagcatc
      961 tctccccgaa cgcttctccg tctgaggcgc ggacagagat cgcccgcatt gcccggttcg
     1021 gcatccaggg cacggacatg cccggccgcg aatacctgcc cgacgttcag atcgccgcga
     1081 tcgccgatta cgtcctcgtg caacgtgaat cccgcttgaa aaggtaatcg ccctttgtgg
     1141 cgtttgcgtg accccgatgc ggtctgcaaa actggccatc gatggtcttg cattttctaa
     1201 ttcgcggtcg cgtccagggt gtaggattcc ggtggttcgt gcatcgcgag gccagcgaac
     1261 tcgacctgcg cggctgggtg cgcaacaccg aagatggcga cgtagaggtt gtcgccgccg
     1321 gcagcactga agacctcgcc gaactgcgcg aaagccttcg tcgcggcccg cgcggaagcc
     1381 gggtcgaccg cctcctcgag cactatcttg atgacaaaga agccaaaaac ctcgactcct
     1441 tccgcattga aggagcgtgg taaacacagg gatacgggcg aatgttcgtg ttctctattc
     1501 ccttccctct actccctgct gcctgttctt tataatt
//
LOCUS       DASQCV010000767         1524 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2977869, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000767 DASQCV010000000
VERSION     DASQCV010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2977869"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VEQ16_12085"
     CDS             complement(<1..344)
                     /locus_tag="VEQ16_12085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64625.1"
                     /translation="MTLMFAMVPAVVLAAALYYQWQRVRNLRRQLQAAAADLEGLQNA
                     CARLAPAGVVQQLVADGIQLGEGPAAERKVATALFADLVSFTAMSERLEPDILLRIIN
                     GYYQRVGEAINE"
     gene            complement(341..>1524)
                     /locus_tag="VEQ16_12090"
     CDS             complement(341..>1524)
                     /locus_tag="VEQ16_12090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64626.1"
                     /translation="DQGSAERPWALRKGEACSLAAFHSLVLKWVKMASALEHVVWETC
                     LVDPQPDRALEAYARQKTGIPVPSIRYFTPVPWLARALIDLHPEYGLLMYLDQNLADL
                     LTLIVSQENSCRFCYGVQRMLLWGQGMSEARIQRLEQELSAGLAQRTAAAIAFGRAQS
                     RLGPAAARDACQALRRAGFGEEEMKEIAFTVAATDFLNRAYTIPAIPVGALERMPDQL
                     LSRLLRPIINRIIERHRSRGRATPLERAPSYPYARLIERYAGLPSAPALGRIIEAMWV
                     SPHLARRCKLLIFAVIARGLGCEVCAQEISKALEAEGLNESMLARVVTHLDAPELDET
                     ERLLMRFARETIWYEPAALQRRARSLRDRLSVLQLIEVIGVTALSNGLCRMNAMVMGH
                     S"
BASE COUNT          281 a          490 c          484 g          269 t
ORIGIN      
        1 tgctcgttga tagcctcgcc gacgcgctgg taatacccgt tgatgatgcg cagcaggatg
       61 tccggctcca gccgctcgct catcgcggtg aagctgacga gatcggcgaa gagcgcggtc
      121 gccactttgc gttcggccgc cggaccttcg ccgagttgta tcccatccgc gacaagctgc
      181 tgcacaacgc cagccggcgc aaggcgggcg caggcgttct ggaggccctc caggtcggcg
      241 gcggctgctt gcagctgcct ccggagattc cggacccgct gccattgata atagagcgcg
      301 gcggcgagaa cgaccgcggg gaccatggca aacatcaatg tcatgaatgg cccatcacca
      361 tggcgttcat tcggcagagt ccgttggaca gcgcagttac cccaatgacc tctatcagct
      421 gcagaaccga gaggcgatcg cgcaagcttc gggcgcggcg ttggagcgcg gcgggctcgt
      481 accagatcgt ctcccgcgca aaccgcatca gcaagcgctc ggtctcgtcc agctcgggcg
      541 cgtctaggtg agtcacgaca cgggcgagca tcgactcgtt caggccttct gcttccaatg
      601 ccttgctgat ttcctgcgcg cacacctcac agcccaggcc tcgtgcaatg acagcaaata
      661 tcaggagctt gcaccgtcgg gcgagatgag gcgagaccca catcgcctcg attatccgcc
      721 ccaaagccgg cgcgctcggc aaccccgcgt acctctcgat aaggcgcgca taagggtaag
      781 agggggcgcg ttcgagcggc gtggcccgtc cacgggaacg atgtctttct atgatgcggt
      841 tgatgatcgg ccgcagcagc cgggaaagaa gctgatcggg catccgctcc agcgcgccta
      901 cggggatggc gggaatcgtg taagcgcggt tgaggaaatc cgtggccgcc accgtgaagg
      961 cgatctcctt catctcctcc tcgccgaaac cggcgcggcg gagcgcctgg caggcgtcgc
     1021 gcgctgccgc gggcccgagg cgcgactgag ctcgcccgaa ggcgatggcg gcagccgtgc
     1081 gctgcgcgag accagcgctc aattcctgct ccagccgctg gatgcgggct tcgctcattc
     1141 cttggcccca cagcagcatc cgttgtaccc cgtagcagaa ccggcaagaa ttctcctggc
     1201 ttacgatcag ggtgaggaga tccgccaagt tctggtcaag gtacatcagg aggccgtact
     1261 ccggatgcag atcgatcagg gcccgcgcca gccatggaac cggcgtgaag tagcggatgg
     1321 agggaacggg tatcccggtt ttttggcgcg cgtacgcttc cagcgcccgg tcgggctgcg
     1381 ggtcgaccag gcacgtttcc cagacaacat gctctagcgc gctagccatt tttacccatt
     1441 ttagcaccag actatggaaa gcagctagcg agcatgcttc tccctttcgc agggcccagg
     1501 ggcgctcagc actgccctga tcgt
//
LOCUS       DASQCV010000768         2372 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_658052, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000768 DASQCV010000000
VERSION     DASQCV010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658052"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            36..1310
                     /locus_tag="VEQ16_12095"
     CDS             36..1310
                     /locus_tag="VEQ16_12095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HYP64627.1"
                     /translation="MSDASVGKALDEYLGMIGDPAATLGELVAADPDFIIGHTTLSAL
                     NSLGGLPGSHEAVREPLTVARALAGKTTKRERLHIEAATAWADGNIEAAAAHWEDALR
                     DDPADILSLRLAHDTHFFLGASQKLRDVPVAVLPSYAPGSRARGFVLGMASFGLEEMG
                     DYAEAEKAGREAVEINPADTWAVHAVAHVLEMQDRGAEGIAWLRGLEPHWTPATGLAV
                     HQWWHLALYLLEAGQLDEVLALYDTHINPNPASIVLDLVDAAALLWRLELAGVDVGPR
                     WQQLAPFWATHAEHVLAFNDLHISLALTGAENTQAADLLDASIQNYAAREDGTNASVS
                     RTLGLPVIRALRAFHTGDYARTVSLLAPLYKQLPPLGGSNAQRDLIIQTLGIAAHESG
                     DLGLVNEIAYERHKLKAGTPRAWRVFPALQFS"
     gene            1704..>2372
                     /locus_tag="VEQ16_12100"
     CDS             1704..>2372
                     /locus_tag="VEQ16_12100"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HYP64628.1"
                     /translation="MAEDRWSRWLNHGRDGGDTVLRARVEAETAIFAAKVLSFVPTSP
                     ADMLDIGCGNGLMAWAALSRWPDLRVTMTDISPALLAQAQAKAAQRGVAGQCCFVGAS
                     AETLEGVADASQDLVTSRSALAYVPDKPAAFRAAYRVLRPGGMLSIAEPLLREEALSA
                     CVLRTAAARAVNPLAVLLHRWKAAQFPDTSEAMDASPMASYTERELLGFAKQAGFHLL
                     HLELH"
BASE COUNT          449 a          761 c          712 g          450 t
ORIGIN      
        1 ttctggcagg gacttgagag cgaggggacg agaccatgag tgatgcaagt gttggcaaag
       61 ccctggacga atatctcggc atgatcggcg accccgccgc gacgctcggc gagcttgtgg
      121 cggcggaccc ggatttcatc atcggccata ccaccctctc cgccctcaac agcctgggcg
      181 gcctgcccgg cagccatgag gcggtgcgtg aaccgctcac cgtcgcccgg gcgctggcgg
      241 gcaagaccac gaagcgcgaa cgcctgcata tcgaagccgc cactgcctgg gcggatggca
      301 atatcgaagc cgccgccgcg cattgggagg acgcgctgcg cgacgatccg gcggacatac
      361 tctccctccg cctcgcccat gacacgcatt tcttcctcgg cgcctcgcag aaattgcgtg
      421 atgtgccggt tgccgtgctg ccatcctacg cgccaggctc ccgcgcgcgc ggtttcgtgc
      481 tgggcatggc cagcttcggg ctggaggaga tgggcgatta cgcggaggcc gaaaaggccg
      541 ggcgcgaggc ggttgagatc aatcccgccg acacatgggc cgtacatgcc gtcgcccatg
      601 tgctggaaat gcaggatcgc ggcgccgaag gcatcgcctg gctgcgcggg ctggagccgc
      661 attggacacc ggctacaggg ctcgccgtgc atcaatggtg gcatttggcg ctgtacctgc
      721 tggaagccgg ccagctggac gaggtgctcg cgctttacga cacgcacatc aaccccaacc
      781 ccgcctccat cgtactcgac ctcgtggatg cggccgcgct gctctggcgc ctggaactgg
      841 cgggcgtgga tgtgggacca cgctggcagc agctcgcccc tttctgggcc acgcatgcag
      901 aacatgtgct agcgttcaac gacctgcaca tttcccttgc actcaccggc gcggaaaaca
      961 cacaggcagc cgatttgctg gacgcttcga tccagaatta cgccgcacgc gaagacggca
     1021 ccaacgcttc ggtcagccgc acgctcggcc tgcctgtcat ccgggccttg cgcgcttttc
     1081 atacgggcga ttatgcccgc acggtctcgc tcctggcacc gctctacaag cagctcccac
     1141 ccttaggcgg cagcaacgcg cagcgcgatc tgatcattca aaccttgggt attgctgccc
     1201 acgaatccgg agacctcggc ttggtcaatg aaattgcgta cgaacggcat aaattgaaag
     1261 ccggaacacc acgcgcctgg cgcgtttttc ccgctttgca atttagctaa gctgatacgc
     1321 atccgttgca aacagcacct ctctttttgc aattcaacgt atgtgcacgc gactcgaaga
     1381 cagcgagaac aacgtaacgc cgggatcatc gcaacctcaa cgcgggcgtg agtaaaaata
     1441 ttttttgttt tttaacctgc ccccgtggaa gcactctatc ttgatgtcac tttttggcgg
     1501 agggaacttt cccccggcgg gcaaacttcc ccccccagcc gcagcgaacg gcgtgcatta
     1561 tttgcgcatc ccgatgaaag acgcatgttt tcgagcatac cgcaatggcc ggaatataaa
     1621 ggtgaggtct tggcgagcac gcggttaagc cactgttaga acaagcctcc tatcacgcgc
     1681 gtatggatac atctgctgag tgcttggccg aagatcgttg gtcccgctgg ctcaaccacg
     1741 ggcgagatgg cggtgatacc gttttgcggg cacgggtgga ggccgaaacc gccatctttg
     1801 ccgcgaaggt acttagcttc gtccccacct ctcccgcgga tatgctcgat attggctgtg
     1861 gcaacgggct gatggcatgg gcggcactgt cgcgctggcc agatttgcgc gtgacgatga
     1921 ccgatatctc ccctgcccta ctggcacagg cgcaagccaa agcagcacaa cggggcgttg
     1981 ccggccaatg ctgtttcgtc ggcgccagcg cggaaacact agaaggtgtc gccgatgctt
     2041 cgcaggatct ggtcaccagc cgctcggccc tggcctatgt gcccgataaa cccgcggcgt
     2101 tccgcgcggc atacagggtg ctgcgccccg gcgggatgct ctccatcgct gagccactct
     2161 tgagagagga agcgctctcc gcctgcgtgc tgcgcacagc cgcagcgcgc gccgtcaatc
     2221 cgcttgctgt actgctccat agatggaagg ctgcgcaatt ccccgacaca agcgaggcca
     2281 tggatgccag ccccatggcc agttatacgg agcgcgagct gctgggtttt gccaagcagg
     2341 cgggattcca cctcctgcac ctggagctgc at
//
LOCUS       DASQCV010000769         2481 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1983810, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000769 DASQCV010000000
VERSION     DASQCV010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2481
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1983810"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VEQ16_12105"
     CDS             complement(<1..285)
                     /locus_tag="VEQ16_12105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64629.1"
                     /translation="MDYNVEAVKVEVIKPAIGAIVHVDRNALFEPAVAHHIMDLLEKH
                     TALIFPQVNLTDKEQLAFTDALGSRINFTTTVKGGDAETRDVYKITLDKTQ"
     gene            complement(380..970)
                     /locus_tag="VEQ16_12110"
     CDS             complement(380..970)
                     /locus_tag="VEQ16_12110"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HYP64630.1"
                     /translation="MMDTGVAPGRRLGLEGSQTRARFIDAAEEVLCDEGMPGLTARQV
                     AAKAGLKTQLLYYYFRTMDDLILALVRRVNEHRMERFEAALASPEPLRALWELNSDPS
                     GAALGSELTSIATHREAIRAEIVRSAQLFRAKQVEAVTKLLGAETKNGAGLVMIAVAL
                     SRMIVAESALGLTDGHREALAIVEEMLDRFGAKQAG"
     gene            complement(999..>2481)
                     /locus_tag="VEQ16_12115"
     CDS             complement(999..>2481)
                     /locus_tag="VEQ16_12115"
                     /inference="COORDINATES: protein motif:HMM:NF020672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SelB C-terminal domain-containing protein"
                     /protein_id="HYP64631.1"
                     /translation="LPPVFTSVLANEGIEALGQSLARLMEGQAQKPAEGLAFLPVDRA
                     FAIPGHGPVVTGTLRGAAVAAGEVLELFPARKAVRVRAAQVRGARVEGAAPGQRVALN
                     LRDVELAELARGMALAAPGWLAPSDWLTISVRAVADAPPLKNGMQLRALLGTEEIGVR
                     LRLLDADALEPGQSGFAQLHCASPVAFPAREHVVLRLASPAQTVAGGRILAPQTKRLR
                     RHSPPVLARLAKLRDLAPETLLLAEIEAQGAVGTSLARLSQLSALAPAHIAEALRAQP
                     VLVARGGLVVARAALDALAGRIPPLLAARPDGLPAGRLLAALPGTGADVLDEAVAQLL
                     ARNAIVRRGALLSLPQPEADRARAAGEADLAVQITALLRAGGLAPPDPRTIVTSLAAK
                     RAVDRLLREGILIRAVDRAKNKEILFHFEAVEAAIRRLEPLLVPPPGLLATDVGAALG
                     ISRKYSIPLLDHMDTIRFTKRVNDRRIRGTASLTVLLSAATNG"
BASE COUNT          447 a          901 c          747 g          386 t
ORIGIN      
        1 ctgcgtcttg tccagcgtga tcttgtacac gtctcgcgtc tcggcatcgc cacccttcac
       61 ggtggtggtg aaattgatgc gcgaccccag cgcgtcggtg aaagcgagct gctctttgtc
      121 ggtcagattc acctgcggga agatcaaagc ggtgtgcttc tccagcagat ccatgatgtg
      181 gtgcgccacg gcgggctcga acagggcgtt gcggtccaca tgcacaatcg cgccgatggc
      241 gggcttgatg acctctacct tcacggcttc aacattataa tccacgatat ttcccccttg
      301 cagtccatgc tgaacgcgcg ccaatgcgcc ggttcagcca aatgctgaac acttcattag
      361 catcactgcg gggcgtgggt caaccggctt gcttggcgcc gaaacggtcc agcatttcct
      421 ccacaatggc gagcgcttcc cggtgcccat cagtcaggcc cagagcggat tccgccacga
      481 tcatgcgcga cagcgccacg gcaatcatca ccagcccggc gccattcttg gtctccgccc
      541 ccaacagctt cgtcacggcc tccacctgct tggcgcggaa aagctgggcg gagcggacga
      601 tctccgcgcg tatggcctcg cgatgagtgg caatggaagt cagctcgctg cccaaagcgg
      661 cgccggacgg gtcgctgttc agctcccaca gggcacgcaa gggctcgggg ctggccaaag
      721 cggcctcaaa ccgctccatg cggtgctcgt tcacgcgccg caccagcgcc aggatgaggt
      781 catccattgt gcggaaataa taatagagaa gctgcgtctt cagccccgcc ttggccgcca
      841 cctggcgggc ggtcaggccc ggcatcccct catcgcacag tacctcttcc gccgcgtcga
      901 taaagcgggc gcgcgtctgc gagccttcca aacccaaacg ccgccccggc gccacgcccg
      961 tatccatcat tcacctttca tttggttgaa acagtctctt acccgtttgt ggcagccgac
     1021 aaaagcacgg ttaacgaggc tgtgccccga attcgccggt cattgacgcg tttcgtgaag
     1081 cggatcgtat ccatatggtc gagcagaggt atggaatatt tacgggaaat gcctagcgcc
     1141 gcccccacat cggtggctag caggccgggg ggcggcacga gcagaggctc aaggcgcctg
     1201 attgccgctt ccaccgcctc gaaatggaac agaatttctt tattcttcgc ccgatccacg
     1261 gcgcggatca gaatgccctc gcgcagcagc cggtccacag cgcgcttggc cgccaggctg
     1321 gtgacgatgg ttcgcgggtc gggcggggcc agcccgccgg cacgcagcag cgccgtgatc
     1381 tgcacggcca gatccgcctc gccggcggcc cgtgcccggt ccgcctcggg ttgcggcagg
     1441 ctcaaaagcg cgccacggcg gacaatggcg ttgcgcgcca gaagctgcgc gacggcctca
     1501 tcaagcacat ccgcgcccgt tcccggcaag gcagcgagca gccggccggc cggcaaacca
     1561 tccggccgcg ctgccagtaa aggcggaatc cgccccgcca gcgcatccag cgccgcccgt
     1621 gccaccacca gcccgccgcg cgccaccagc acaggctgcg cccgcaacgc ttcagcaata
     1681 tgcgcgggcg ccagggcgga aagctgggaa aggcgcgcca ggctcgtccc caccgccccc
     1741 tgcgcctcga tctcggccag caacagcgtc tcgggcgcca ggtcgcgcag cttggccaga
     1801 cgcgccagca caggcgggga atggcgccgc agcctcttgg tctgcggcgc caggatgcgc
     1861 ccgcccgcca cggtctgcgc cggcgaggcc aggcgcagca ccacatgctc gcgcgccgga
     1921 aaggccaccg ggctggcaca atgcaattgc gcaaagccgc tctgccccgg ctccagcgcg
     1981 tcagcatcca aaaggcgcaa ccggacaccg atttcctccg tgcccaacaa cgcgcgtagc
     2041 tgcatcccgt tcttcaaggg cggcgcatca gccacagcgc ggaccgagat ggtcagccag
     2101 tccgagggcg cgagccagcc cggcgccgcc agcgccatgc cgcgcgcgag ttccgccagc
     2161 tccacatcgc gcagattcag cgccacgcgt tggccgggcg cggcgccctc cacccgtgcc
     2221 ccgcgcacct gcgccgcccg cacccgcacc gctttgcggg ccggaaacag ctccagcacc
     2281 tcgcctgccg ccacggcagc accccgcaac gtgcccgtca ccacaggacc atggccggga
     2341 atggcgaagg cccgatcaac aggcagaaaa gccagccctt ccgctggttt ttgcgcctgc
     2401 ccttccatca gcctggcgag gctttggccc agcgcctcta tcccttcatt ggccagcaca
     2461 gaggtaaaaa ccggcggcaa g
//
LOCUS       DASQCV010000770         1743 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1158659, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000770 DASQCV010000000
VERSION     DASQCV010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1158659"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1743)
                     /locus_tag="VEQ16_12120"
     CDS             complement(<1..1743)
                     /locus_tag="VEQ16_12120"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HYP64632.1"
                     /translation="MKNHPWKEEMSVIVAALIFGRPLKWIEDRYENLTTANQAREQEM
                     TLRLAFDANGGLIASNSDYSVNNGAYPQGPDANVAVHLFMWGAYKMPAYAFLTRGWYS
                     NTVGLAAYRGPWAMESLARETALDVAARKMGIDPIEIRRRNLIKLSDQPTMTSMGIPL
                     EDITPAECLEKLLENFDVAAFRAEQAAARKEGRYLGLGVAAYVEPTGSAGSIGVMTGE
                     LAQLRIEPTGKVTATMSTHSQGHGTQTTMAQLIAETLGVAYEDVTVFEGDSSRGGFSP
                     GAAGSRQGVIAGGASIKTAEKLAEKVKILAGHLFNAPVENVTIANGMVHIAGAEEMTR
                     SLRDIAEIAYGEPTRLPPGFEAGLEAQYRYQPPPMTFTSAAHACIVEVDADTGFVKIL
                     RWISAEDCGTIINPAVVEGQIAGGLAQAIGMVLLEEVSFDERGNPTATTFKDYMLPQI
                     SDVPDFEYLHANTPSQSVGGIRGVGEGGAIIGPPTLVNAIADALVPFGEIPFDLPLTP
                     VKLLEVIEGRPLAPKKLEEAVVATPVPVAAAPVVAAVPAPVTAVSADGLWKMVLSTPM
                     GPQEMKGRLETNGSA"
BASE COUNT          314 a          634 c          466 g          329 t
ORIGIN      
        1 cgcgctccca ttggtctcca agcggccctt catctcctgc ggccccatcg gcgtggagag
       61 caccatcttc cacaacccat cggccgagac cgccgtcaca ggcgcgggca cggctgccac
      121 cacgggcgcc gccgccacag gcacgggtgt tgccaccacc gcctcttcca gcttcttcgg
      181 cgccagaggc cgcccctcga tcacctccag caatttcacc ggcgtgagcg gcaaatcaaa
      241 gggaatctcg ccaaagggca cgagcgcatc ggcaatcgca ttcaccaggg tcggcggccc
      301 gataatcgcc ccgccttcgc ccacgccgcg tatgccgccc acgctctgcg atggggtatt
      361 ggcatgcaga tattcaaaat ccggcacatc cgaaatctgc ggcagcatat aatccttgaa
      421 ggtcgtcgca gtgggattgc cgcgctcatc gaaggagact tcctccagca ggaccatgcc
      481 gatggcctgc gccagcccgc ccgcaatctg cccttccacc acagccggat tgatgatggt
      541 cccgcaatcc tcggcggaaa tccagcgcag gattttgacg aagcctgtat ccgcatccac
      601 ctccacaatg caggcatggg ccgcgctggt gaacgtcatc ggcggtggct ggtagcgata
      661 ttgcgcctcc agcccggcct cgaatcccgg cggcaggcgc gtcggctcgc cataggcaat
      721 ttcggcaatg tcgcgcaggc tgcgcgtcat ttcctccgcg ccggcgatat gcaccatccc
      781 attcgcgatg gtcacgttct ccaccggcgc attgaataaa tgcccggcca gtattttcac
      841 cttctccgcc agcttctccg ccgtcttgat gctggccccg cccgcaatca cgccctgccg
      901 gctgcccgcc gcccccggcg aaaacccgcc gcgcgagctg tcaccctcga acaccgtcac
      961 atcttcatag gcaacaccaa gcgtttccgc gatgagctgc gccatggtgg tctgtgtgcc
     1021 atggccctgg ctatgcgtgc tcatggtcgc cgtcaccttg ccggtcggct cgatgcgcaa
     1081 ttgcgccagc tcgcccgtca tcacgccgat gctgcccgcc gagcccgtcg gctccacata
     1141 ggccgcaaca cccaagccca gataccgccc ttctttccgc gccgccgcct gctcggcgcg
     1201 gaacgcggcg acatcgaaat tctccagcaa tttctcaagg cattcagcgg gggtgatatc
     1261 ctccagcggt atacccatcg aggtcatggt cggctgatcg gagagtttga tcagattgcg
     1321 ccggcggatc tcgattggat cgatccccat ctttcgcgcc gccacatcca aagccgtctc
     1381 gcgtgccaag ctctccatcg cccagggccc gcgataagcg gccagcccca ccgtgttgct
     1441 gtaccagccc cgcgtgagga aggcataggc cggcatctta tacgcccccc acatgaacaa
     1501 atgcacggcg acattggcat ccggtccctg cggataggcg ccattattca cgctgtaatc
     1561 gctattggaa gcaatcagcc cgccattggc gtcaaacgcc agccgcagcg tcatttcctg
     1621 ctcgcgcgcc tggttggcgg tggtcaggtt ctcgtaccta tcctcaatcc atttcagcgg
     1681 ccgcccgaag atcagcgcgg cgacgatcac cgacatctct tccttccacg gatggttctt
     1741 caa
//
LOCUS       DASQCV010000771         2052 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1657323, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000771 DASQCV010000000
VERSION     DASQCV010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1657323"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VEQ16_12125"
     CDS             <1..212
                     /locus_tag="VEQ16_12125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014240060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HYP64633.1"
                     /translation="LNAPTKLMKNLGYGAGYEYDHEAEDAFSGQNYFPEGMGRPDFYR
                     PVERGFEREIVKRLAYWQKLREEKA"
     gene            209..1177
                     /locus_tag="VEQ16_12130"
     CDS             209..1177
                     /locus_tag="VEQ16_12130"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019013199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HYP64634.1"
                     /translation="MKDVTVTADAAEMRLDRFLRRENPGLTQAMLQKLLRNGKIRLNG
                     AKAEANARLAAGDVLRLPEIAPPEKAPRERHVVKMDPARLKELEGMILYRDNAVIALN
                     KPAGLAVQGGSGIAVHVDGMLDALREEDGERPKLVHRLDRDTSGILLLARSAKVAARL
                     STQFRSRNVEKIYWALVSGVPDVLEGRIDLRLKRVEFGNVSRSEPAKRKDEDAQSAVT
                     EYRVLDYAGRKFALLELRPQTGRMHQLRAHCLALGTPILGDAAYGAAFAEGFADQLHL
                     HARRLKLPHPDGGTLTLEAALPQHMRDGLKYLGFAVPEAAKPARHM"
     gene            1235..>2052
                     /locus_tag="VEQ16_12135"
     CDS             1235..>2052
                     /locus_tag="VEQ16_12135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HYP64635.1"
                     /translation="MRWRLHACLAGILLLLCTSARGADPVEYDVAFTPSGDKELDGLL
                     KQSASLVSLRGKLPAAPFALIGRARGDEAQFLIVLRSLGYVGGSVDITIDGKALDDPA
                     LLAELTALPASQRAVVQVVPHQGTQFHIGHVAIQGLPPGFSPPATVKSGDVALAAPIL
                     GAGSTLQTALQNDGYAFATVESPPLAVARLQAHEVDVTYTATPGPRVDVGPISFSGLT
                     RTDPAFLQRHIALRQGQLYSAKDVSDARDSLLGLGVFSSVTAVPEQVPGNQAPV"
BASE COUNT          368 a          642 c          682 g          360 t
ORIGIN      
        1 tcctcaacgc gccgaccaag ctgatgaaaa atctcggcta tggtgccggc tatgaatatg
       61 accacgaggc cgaggacgct ttctcagggc aaaattattt cccagaaggc atggggcggc
      121 cagattttta tcgtcccgtg gagcgcggct tcgagcgtga aattgtgaag cgcctcgcct
      181 attggcaaaa attgcgcgaa gagaaggcat gaaagacgta accgtgacag cagacgccgc
      241 cgagatgcgg ctggaccggt ttctgcgccg cgaaaatccc ggcctgaccc aggccatgct
      301 gcaaaaattg ctgcgcaacg gcaaaatccg gctgaacggc gcgaaggccg aggccaatgc
      361 gcgcctggcc gcgggcgatg tgctgcgtct gcctgaaatc gccccccccg aaaaagcccc
      421 gcgcgagcgc catgtggtga agatggaccc ggcccggctc aaggaactgg aaggcatgat
      481 cctctaccgc gacaatgcgg tgatcgcgct caacaagccg gccgggcttg ccgtacaggg
      541 tggcagcggc atcgccgtgc atgtggacgg catgctggac gcgctacgcg aggaagatgg
      601 cgaacgcccg aaactggtgc accggctcga ccgcgacacg tccggaattt tgctcctggc
      661 gcgcagtgcg aaggtggcgg caaggctgtc aacgcagttc cgtagccgga atgtcgagaa
      721 gatctattgg gcactggtct cgggcgtgcc agatgtgctg gaggggcgga tcgatctgcg
      781 actgaaacgg gtcgagttcg gcaatgtttc gcgttcggaa ccggccaagc gcaaggacga
      841 ggacgcgcaa tcggcggtga cggaatatcg cgtgctggat tatgccgggc gcaaattcgc
      901 gctgctggag ctgcggccgc agaccgggcg catgcaccag ctgcgcgccc attgcctggc
      961 gctgggcacg cccatactgg gggacgccgc ctatggcgcg gcctttgccg aggggttcgc
     1021 cgaccagctg catctgcacg cccgccgtct caagctgccg caccccgatg gcggcacgct
     1081 gacgctggaa gcggccttgc cccagcatat gcgggacggg ttgaaatatc tcggttttgc
     1141 cgtgcctgag gcggcaaagc cggcgcggca tatgtgagca gttcttaatc aggacaaagc
     1201 tagccggcgc gggcgaatct ggccataaac ccccatgcgg tggcggttac atgcctgtct
     1261 tgccggtatt ttgctcctgc tctgcacctc cgcgcggggg gcggaccccg tcgaatatga
     1321 tgtcgccttc accccgagcg gcgacaagga actcgatggg ctactgaaac aaagcgcctc
     1381 gctcgtcagc ctgcgcggca agctgccggc ggcacctttc gcgctcatcg gccgcgccag
     1441 gggcgacgag gcgcaattcc tcatcgttct gcgcagcctc ggctatgtcg gcggcagcgt
     1501 ggacatcacc attgacggca aggcactgga cgaccctgcc ctgctggccg agctgacggc
     1561 gctgccggcg tcgcagcgtg cggtggtgca ggtggttccg catcagggca cgcaatttca
     1621 tatcggacat gtcgcgatcc agggcctgcc gcccggtttt tctccgcccg ccacggtcaa
     1681 gtccggcgac gtggcactgg cggcgccgat tctcggtgcc gggtcgacct tgcagaccgc
     1741 gctgcagaat gatggttacg ccttcgccac ggtcgagtct ccgccgctgg cggtggcgcg
     1801 gctgcaagcc catgaggtgg atgtgaccta caccgccacg ccggggccgc gcgtggatgt
     1861 cgggccgatc agtttttccg gcctcacgcg cactgacccg gccttcctgc aacgccatat
     1921 cgcgctgcgc cagggccagc tttattccgc gaaagatgtg tcggatgcac gggattcgct
     1981 gctcgggctc ggcgtgttct cttccgtcac cgccgtgccg gaacaggtgc cgggcaatca
     2041 ggcgccggtg at
//
LOCUS       DASQCV010000772         4062 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_660008, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000772 DASQCV010000000
VERSION     DASQCV010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4062
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_660008"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1158)
                     /locus_tag="VEQ16_12140"
     CDS             complement(<1..1158)
                     /locus_tag="VEQ16_12140"
                     /inference="COORDINATES: protein motif:HMM:NF014235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliM/FliN family flagellar motor switch protein"
                     /protein_id="HYP64636.1"
                     /translation="MLEDNAGSAVIDLLDSMRAPQLRSMLMEHLSDRFMRQIAFNLFQ
                     RMRHSVQLLSCINNVISHESAMSALPEVMLAGISELAPLRGRMLLAIDGDLIGAMVDA
                     MCGATVSHPFERYELSALETRVGRQMIDLALETIAETLNPLIQLNLQPIAYENATGML
                     AIADGQDWMIAVTGIFESALGSGTIKLIAPYAGFEPLETKVASQSGLLGGRGADAGWA
                     AALESLTDSTPVHMRFELARAIVPLAMLETLQPGNILPFTLAQEAIAVSGEVDLFRAD
                     YGQQDGYVCCRVKSAPEGDVEMAEQKERNARERLIEPERVELERIQAQPRGAHAIGAR
                     NVLDRVQVALTVELGRTQITVKDLRALRHGQIVSLEQMVGEPLAIFANGQKL"
     gene            complement(1151..2680)
                     /locus_tag="VEQ16_12145"
     CDS             complement(1151..2680)
                     /locus_tag="VEQ16_12145"
                     /inference="COORDINATES: protein motif:HMM:NF014207.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HYP64637.1"
                     /translation="MQAGDVSAAPPGVVSSATTAGGTPGTAASWEAALSAAHAPSEGA
                     QDTAGQTTSSQAVPGTATPSQNVAGQDMQGQRAYGRAGGGNGADEAAQAHDSGTDQTN
                     AGAVTVTEKLAQQRHNIIAAAAVNAQAAAQPGKTPSKEQDQNKAQNGAALTGLMETAQ
                     TTMPAGDAASTPQPDGQRAAAAIQTVATASVQSGTPGSVRGNATTLPGGSETTPASGR
                     AESGTAAGPGADATSSHSSQLTLTGLTQPAQAIPTDLPTAAPLAHVNKASIGAAQALG
                     TSASSATTAPQEAATEHAGKAIAPAGSESAAGTAGGKAGTAADIAQIVQQTTPSGMGD
                     KGSGKNTSSNVISFTGVAAAHEAASQNVTPAASSAVTAISAALPASTSANAAGLAATV
                     TAMHQAGQSGATLRLDPPGLGTLSVHVALGQQGQVNVLFVPSTQAASNALQNNLSGLG
                     AALAQSGLTLGQAQVGGQFNQNAGQGGGQQGGGQGGAATANRFEAELPTTAQNGVNAY
                     A"
     gene            complement(2680..3702)
                     /locus_tag="VEQ16_12150"
     CDS             complement(2680..3702)
                     /locus_tag="VEQ16_12150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HYP64638.1"
                     /translation="MSEAQKQLPGPGLTGPERAAVVLRELGEGTAAAVLREMDEAAVN
                     RISAAMATLKAVPQDVREDVMMNFVSELGITGIGGDGLKFLNRVLVSALGETQAREIL
                     ERLNRAERRSAFHLPPNADARTLAMQMAHERPQTIALLLAHIPHEMGANLLTFLPEDL
                     AAETLYRFSTLDVVSPSMVVELRDMLEELMSASGGVGRRVTNLGGAKQTADIINHFPS
                     AMSDLVLNAIDTRDAKTADKIRENLFTFIDLGKLTDRSMQILLREVPSDKMAPALRLV
                     DETLRARFFQNLSARQVEVLKEELRSGPPIRRVDALTAQTEIVEAALRLAGEGRIAIS
                     ATEEMV"
     gene            complement(3699..3827)
                     /locus_tag="VEQ16_12155"
     CDS             complement(3699..3827)
                     /locus_tag="VEQ16_12155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64639.1"
                     /translation="MSIFVLRVMNGAFGVRLVSVDMTDEKRAPAVMDVMASERRDT"
     gene            complement(3824..>4062)
                     /locus_tag="VEQ16_12160"
     CDS             complement(3824..>4062)
                     /locus_tag="VEQ16_12160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64640.1"
                     /translation="PLVQAALELMAAAALLFGFAVPAGKRLAVVNIQSYLPPQPRPMP
                     AVLPPRDFSDLREQAADNVQGVARLLQNWAEDSE"
BASE COUNT          624 a         1384 c         1287 g          767 t
ORIGIN      
        1 cagtttctgc ccattggcga aaatcgccag cggttcgccc accatctgct cgagcgaaac
       61 gatctgccca tggcgcaaag cgcgcaaatc cttcaccgtg atctgcgtgc gccccagttc
      121 cacggttaga gccacctgta cccggtccag cacattgcgc gccccgatgg cgtgcgcccc
      181 gcggggctgc gcctgtatcc gctccagctc cacgcgctcc ggctcgatca gccgttcacg
      241 ggcattgcgc tctttctgtt ccgccatctc cacatctcct tccggtgccg atttgacacg
      301 gcagcacaca tagccatcct gctgcccgta atcggcacga aacaaatcca cctcgcccga
      361 caccgcgatg gcctcctgcg ccagcgtgaa aggcagaata ttgcccggct gcagcgtctc
      421 cagcatggcc agcggcacga tggcgcgggc cagctcgaag cgcatatgta ccggggtgga
      481 atcagtcagg gactcgagcg ccgcggccca gcccgcatcc gcgccgcgcc cgccgagcag
      541 gccagactgt gaggccacct tggtctccag cggctcgaag ccggcataag gggcgatgag
      601 cttgattgtg cccgagccaa gcgcggactc gaaaatgccg gtgacggcga tcatccagtc
      661 ctgcccatcg gcaatcgcca gcatgccggt tgcattctca taggcgatgg gctgaaggtt
      721 aagctgtatc agcgggttca gcgtttcagc gatcgtttct aaagcgagat cgatcatctg
      781 ccggccgacg cgcgtttcta gcgcggacag ctcgtagcgc tcgaacgggt gcgacactgt
      841 ggcgccgcac atggcgtcga ccatggcgcc gatcagatca ccatcgatgg cgagcagcat
      901 gcgtccgcgc aacggcgcca gctcggaaat gccagccagc atcacctccg gcaaggccga
      961 catggcggat tcatgggaga tgacattgtt gatgcaggac agcagctgca cggaatggcg
     1021 catgcgctgg aacaaattga aggcgatctg gcgcatgaaa cggtcggaga gatgttccat
     1081 gagcatcgaa cgcagctgcg gcgcccgcat ggaatccagg aggtcgatga ccgccgagcc
     1141 ggcattatcc tcaagcatag gcgttcacac cgttctgtgc tgttgtgggg agctccgcct
     1201 cgaacctgtt ggcggtggcc gcgccgccct ggccgccacc ctgctgcccg ccgccttgcc
     1261 cggcattctg gttgaactgc ccgcccacct gggcctggcc gagcgtgagg cctgattgcg
     1321 ccagcgccgc gccgagcccg gagagattat tctgcagcgc gttgctggcg gcttgggtgg
     1381 aggggacgaa cagtacattc acctggccct gttgccccag cgccacatgc accgagagcg
     1441 tgccgagccc cggcgggtcg agccgcaaag tggcgccgct ctgcccggcc tggtgcatgg
     1501 cggtgacggt ggcggcgagc cccgccgcgt tggcgctggt gctggcggga agggcggcgc
     1561 ttatggcggt caccgcgctg cttgcggcag gggtgacatt ttggctcgcc gcctcatgtg
     1621 ctgccgctac gccggtgaag ctgatgacgt tgctgctggt attcttgcca ctgcccttgt
     1681 cgcccatgcc ggagggcgtg gtttgctgaa cgatctgggc tatatccgcc gctgttcccg
     1741 ctttgccgcc ggccgttccg gccgcgctct cactgccggc cggcgctatc gccttgccgg
     1801 catgttccgt ggcggcctcc tgcggcgccg tagtggcgga actggcgctc gtgccgagag
     1861 cttgcgcggc gccgatgctg gccttgttga cgtgtgccag gggcgcggcc gtggggaggt
     1921 ccgtcggtat cgcctgcgcc ggttgggtga ggccggtcaa agtaagctgg gagctgtggc
     1981 tggacgttgc atccgcgcct gggcccgctg cggtgccgct ttccgcgcga cctgacgcgg
     2041 gcgtggtttc cgagccgccg ggcaaggttg tggcattgcc ccgcacgctg cctggcgttc
     2101 cggactgtac cgacgccgtt gccacggtct ggattgccgc ggccgccctc tgcccgtccg
     2161 gctgcggcgt ggaggcggca tcgccagccg gcatggtggt ttgggccgtt tccatcaagc
     2221 cggtcagtgc cgcgccattt tgtgccttgt tttggtcctg ctctttgctt ggtgttttgc
     2281 cgggctgggc tgccgcttgt gcgttcaccg ccgctgcagc gatgatgttg tgccgctgct
     2341 gggcgagttt ctctgttacc gtcaccgcgc ccgcattcgt ctggtccgtg ccggaatcat
     2401 gcgcctgcgc ggcctcatcc gctccgttgc cgccgccagc gcggccatag gcacgttggc
     2461 cctgcatgtc ctgtcccgcc acattctggc ttggcgtggc agtgccaggc acggcctggc
     2521 tggatgtggt ttggccggct gtatcctgcg ccccctctga cggcgcgtgc gccgcgctca
     2581 gcgccgcctc ccagcttgcc gccgtgcccg gcgtcccgcc tgccgttgtg gcggaagaca
     2641 ctacccccgg tggcgctgca ctgacatcac ctgcctgcat cacaccatct cctcggtggc
     2701 gctgattgcg atccgtccct cgccggccag gcgcagcgcc gcctcgacga tttccgtctg
     2761 tgcggtcagt gcgtcgacgc ggcgtatagg cgggccggag cgcagctcct ccttgagcac
     2821 ttccacttgc cgcgccgaga gattctggaa gaagcgggca cgcaacgtct cgtccaccag
     2881 ccgcagcgcc ggcgccatct tgtcgctcgg cacctcgcgc agcagaatct gcatcgagcg
     2941 gtcggtgagc ttgccgagat cgatgaaggt gaagagattt tcgcggattt tgtcagccgt
     3001 cttggcgtcg cgcgtatcga tggcgttcag caccaagtca gacatggcgg acggaaaatg
     3061 gttgatgata tccgcggtct gcttggcgcc gccaagattg gtgacgcgcc gcccgacccc
     3121 gcccgaggcg ctcatcagct cctccagcat gtcgcgcaat tccaccacca tgctgggcga
     3181 caccacatcg agcgtggaga aacggtacaa ggtctccgcc gccaggtcct ccggcagaaa
     3241 tgtgagcaga ttggcgccca tttcatgtgg aatatgcgcc agcagcaaag caatggtctg
     3301 cggccgctca tgcgccatct gcattgccag cgtgcgcgcg tcggcattcg gcggcagatg
     3361 gaaggctgaa cgccgttctg cgcggttgag ccgctccaga atctcgcgcg cctgcgtctc
     3421 gcccaacgca ctcacgagca cgcggttgag gaatttcagc ccgtcgccgc caataccggt
     3481 aatacccagc tcactgacaa aattcatcat cacgtcttcg cgcacatcct ggggaaccgc
     3541 tttcagcgtg gccatggcgg cggagatgcg gttgaccgcc gcctcgtcca tttcccgcag
     3601 tacggcggcg gcggtgcctt cgcctagttc gcgcagcacc accgctgcgc gttcgggccc
     3661 cgtgagccca gggccgggaa gctgtttttg cgcctcgctc atgtgtcgcg cctctcgctt
     3721 gccatcacat ccatcaccgc cggggccctc ttctcatccg tcatatccac gctgaccaac
     3781 ctcacgccaa aagccccgtt catcacacgc aaaacgaaaa tgctcactcc gaatcctcgg
     3841 cccaattctg caacagccgc gccacgcctt ggacgttgtc ggccgcctgc tcgcgcagat
     3901 cggagaaatc gcgcggtggc agcaccgccg gcatcggccg gggctgcggc ggcagatagg
     3961 attggatatt caccacggcg agccgcttgc ccgccggcac ggcaaagccg aacagcaaag
     4021 ccgccgccgc catcagctcc aatgccgcct gcaccagcgg cg
//
LOCUS       DASQCV010000773         1866 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3146287, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000773 DASQCV010000000
VERSION     DASQCV010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3146287"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            264..>1866
                     /locus_tag="VEQ16_12165"
     CDS             264..>1866
                     /locus_tag="VEQ16_12165"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HYP64641.1"
                     /translation="MDSLAKELKKQFGEGQVFKDDQDLRAGDRWPDRLQQEVLHSQVL
                     LAVIGKDWLSVHDEYGRRRIDDEDDWVRQEICTALTHKKRVIVLLVAPAVLPNKHGLP
                     KDCPLQQLPELQHLPLRLGRDFDHDLAVLVKELAAVLPAPVAASEPVKTPSGGTNETR
                     ASDEPGPHNLPVPPRGFVGHAALLAKLRDELRRGGVIILKGQGGVGKTDLALAAAHAA
                     YQDNEIPGGMVWINGELKLSLEGCLRQMAQVFFGDRLEQFDFARCGAQVGRHLQKCGP
                     LVIFDYFDGHASDRELLHWLAEIRPPARVLVITRKVPPGLHGRVLNMDVLPRAEAMQM
                     FINHASARGVNTQGQEKLVNELCQEVGDLPLAIQLLSARAVGVNLKRLLDRVRKGLDE
                     IAEVEEDPSLPPRHKSARACYALSFEELSAEARALLLRLSVLPDGAGDDLITAVMGNE
                     DWDRAAAELVRVSMWRFDDPRYTVQTLVRQFAREALGAGRAEAELRAARALAKLALEK
                     ANRTHPTAAPADLLDGLDWFTAEWRN"
BASE COUNT          347 a          576 c          608 g          335 t
ORIGIN      
        1 gttcaaagta agcatcggtg gtttgcagga gggcgccgac ccgcgccggt gctgaaggaa
       61 aacggggcca cttacccgaa cgctttagtg tcctgaaacg gagtccgcaa gataacctcg
      121 acgactcgaa gacagccgcc ctttcgcttt ttgctttaca atcgaaatgc tgccccccat
      181 aatcactgct aatccgcaga gcggttcgcc tcaggtgcac catgattttc atcagctacc
      241 gcaaggccga cacccaggcc gttgtggaca gcctcgccaa ggagttgaaa aagcagttcg
      301 gcgaggggca ggtcttcaag gacgatcagg acctccgcgc cggtgatcgt tggccggacc
      361 ggctgcagca ggaagtactg cacagccaag tgctgctggc tgtcatcggc aaggactggc
      421 tttcggttca cgatgaatat ggccggcggc ggatcgacga cgaggacgat tgggtccgcc
      481 aggaaatctg cacggcccta acccacaaga agcgtgtgat cgtgctgctg gtcgcgccgg
      541 ccgtattgcc caacaagcat gggctgccca aggactgccc gctgcagcag ctcccggaat
      601 tgcaacactt gccgctgcgc ctaggccggg atttcgacca cgacctggcg gtgctcgtca
      661 aggagttggc cgccgtcctt ccggcgccgg tcgcggcctc cgagccggtg aagacgccct
      721 ctggcggcac aaatgagaca cgcgcatcgg acgagccggg cccgcataac ctgcccgtgc
      781 cgccgcgcgg atttgtcgga catgcagcgc tcttggccaa gctgcgcgac gagttgcgcc
      841 gcggcggcgt catcattctc aagggccaag gcggcgtcgg caaaacggac ctggccctcg
      901 ccgccgctca tgccgcctat caagacaatg agattcccgg cggcatggtc tggatcaatg
      961 gcgaactcaa gctcagtctc gaagggtgcc tgcggcaaat ggcccaggtc ttcttcggtg
     1021 accggctgga gcaattcgac ttcgcccgct gcggcgctca ggtcggccgg catttgcaga
     1081 aatgcggtcc cctggtgatc ttcgactact ttgatgggca cgccagcgac agggagttac
     1141 tgcactggct ggcggaaatt cggccgcctg cccgcgtgct cgtcatcacg cgcaaggtcc
     1201 cgccaggttt gcatgggcgc gtgctcaaca tggacgttct gccgcgcgcc gaggcgatgc
     1261 agatgttcat caaccatgcc agcgcgcgcg gcgtgaatac gcaagggcag gaaaaattgg
     1321 tgaacgagtt gtgtcaggaa gtgggcgatt tgcccctcgc gatccagctc ctaagcgccc
     1381 gcgccgtggg ggtgaacctg aagcgcttgc ttgatcgcgt tcgcaagggg ctggatgaga
     1441 tcgcggaggt tgaggaagac cccagcctgc cgccgcgtca caagagcgcg cgcgcctgtt
     1501 atgccctgtc gtttgaggaa ttgagcgccg aggcgcgcgc tctcttgctg cgcctgagtg
     1561 tcctgcccga cggggccggt gacgatttga ttacggcagt catgggaaac gaggactggg
     1621 atcgcgccgc cgcagagctg gtccgagttt cgatgtggcg ttttgacgat ccgcgttaca
     1681 cagtgcagac cctggtgcgg caatttgccc gggaagccct gggtgccggc cgggctgagg
     1741 cggaactccg cgcggcgcgg gcactggcca agctcgccct cgagaaagcc aatcggaccc
     1801 atcccacggc ggcgccggcc gacttgctgg acggcctcga ttggttcacg gcggaatggc
     1861 gcaacc
//
LOCUS       DASQCV010000774         2499 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_496033, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000774 DASQCV010000000
VERSION     DASQCV010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2499
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_496033"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1242
                     /locus_tag="VEQ16_12170"
     CDS             <1..1242
                     /locus_tag="VEQ16_12170"
                     /inference="COORDINATES: protein motif:HMM:NF013104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64642.1"
                     /translation="LVRSRNAAHVMMSSLCIVSVAAGAYFVCGFAFQGFAGGPSYTVR
                     LGGTEWNWLADRPLFWRGLDWNGSPAALAAWMQMLAVALAAAIPLGAAAERWRLSAMC
                     ASSAILAGWIYPFFAHWAWGGGWLAELGVNYGLGHGFVDAGGSSTIQALGGLTALSMA
                     WILGPRRGKYTHDGMPTAIPGHNAVFVLLGCLLAWVGWVGLNAAGAILLSGIDPRRVG
                     LVAVNTTFAAGAAASAAAVVTNVRFGRPDASLSANGWVGGLAAGSAACAFVPPAAAIL
                     IGLVAGIAIPLAIENLELRLGIDDPGGAISVHAVGGCWGILAVGLFGRFPAPVLNTAD
                     ALAGRGTLGDEGQWLAQLIGLATLLGLVLPLVYGVNWLLNRLVPQRVALEGERQGLDL
                     HELGAGAYPEFLTHTDEFLQR"
     gene            complement(1215..2168)
                     /locus_tag="VEQ16_12175"
     CDS             complement(1215..2168)
                     /locus_tag="VEQ16_12175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008945548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing GNAT family
                     N-acetyltransferase"
                     /protein_id="HYP64643.1"
                     /translation="MPVLEKHVRAVRSFNRFYTRKIGLLSEGHLNSPFSLTEVRVLYE
                     LAHRRSPVAAEIATDLGLDAGYLSRVLLRFRKRGLVGRTRSVGDRRQSHLALTRKGQD
                     VFRPLDRSASQAVAALLKQLSRGEQASVVKAMAAITRILGGRVERGPGIVLRPHQPGD
                     IGWVVNRHGVLYAREQGWDERFEAVVAQIAAAFIHNFKPAHERCWIAERSGEIVGSVF
                     VVRESDEVARLRLLLVEPEARGLGIGKRLVDECIRFARRAGYRKIVLLTESTLKAAQH
                     IYQQAGFRLAREAQHSEFGFPVVGQHWELDLEPQRCRNSSV"
     gene            2262..>2499
                     /locus_tag="VEQ16_12180"
     CDS             2262..>2499
                     /locus_tag="VEQ16_12180"
                     /inference="COORDINATES: protein motif:HMM:NF023036.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-binding protein"
                     /protein_id="HYP64644.1"
                     /translation="MTRRILLLVGVILLAGCGAKTQTQGQTKRYAMEGEIKSLDSGAK
                     TASINTGKIEGWMEAMTMEYPVKPDAEFAKLHVGD"
BASE COUNT          409 a          785 c          815 g          490 t
ORIGIN      
        1 ctggtccgct cccgcaacgc ggcgcacgtg atgatgtctt ccttgtgcat cgtttcggtc
       61 gccgccggtg cctatttcgt ctgcggcttt gccttccagg gattcgccgg cggaccttcc
      121 tatacggtcc ggctcggcgg cacggagtgg aactggctgg cagaccggcc gcttttttgg
      181 cggggcctcg attggaatgg ctcccctgcc gcgttggcgg cgtggatgca gatgctcgcg
      241 gtggctttgg ccgctgcgat tcctttgggc gccgcggcgg agcgctggcg gctgagtgcc
      301 atgtgcgctt cctccgccat tttggcgggt tggatttacc ctttctttgc ccattgggcc
      361 tggggcggcg gatggctggc cgaactcggc gtgaactatg ggctcggcca cgggttcgtg
      421 gatgctggcg gctcgtccac catacaggcc ctgggcggct tgaccgcgct ttccatggct
      481 tggatcctgg gaccgcgccg gggcaaatat acacacgacg gcatgcccac agccattccg
      541 gggcataatg cggtttttgt tttgttgggt tgtctgctgg cgtgggtagg gtgggtcggc
      601 ttgaatgctg cgggcgccat ccttttgagc ggcattgatc cgcgccgcgt cggcctggtc
      661 gcggtgaaca ccaccttcgc cgccggagca gccgcctcgg cggcggcggt ggtcaccaat
      721 gtgcggttcg gcagaccgga tgcctctctc agcgcgaacg gttgggtggg cggcctggcg
      781 gcggggagcg cggcttgcgc tttcgtgccg ccggcggcag ccatcctgat cggcttggtc
      841 gccggcatcg ccattccgct cgccatcgaa aacctggagc tgcggctggg aattgacgat
      901 cctggcggcg cgatctccgt ccacgccgtc ggcgggtgct ggggaatatt ggcggtgggt
      961 ctgtttggac gcttcccggc accggtcctc aacacggcag acgcgctcgc cgggcgcggc
     1021 acgctcggcg atgagggcca atggctggcc cagctcattg gcttggcaac cttactcggc
     1081 ttggtgctgc cgctggtcta tggcgtcaat tggctgttga atcgcctcgt gccgcagcgc
     1141 gtcgcgctcg agggagaacg ccagggtcta gatctgcacg aactgggcgc cggcgcctat
     1201 ccggagttcc tgactcacac cgacgaattc ctgcagcgct gaggctcgag atccagctcc
     1261 cagtgctggc cgaccacggg aaacccgaac tcgctatgct gcgcttcccg cgccaggcgg
     1321 aatccggctt gctgatagat gtgctgcgcc gccttcagcg tgctttcagt cagaagaact
     1381 atctttcggt agcctgcgcg gcgcgcgaag cggatacatt cgtccaccag gcgctttccg
     1441 atacccagac cccgggcctc cggctccacc agcagcagcc ggagccgggc gacctcatcg
     1501 gactctcgca ccacaaacac cgagcccact atttcgccgg agcgttcggc gatccaacac
     1561 cgctcgtgtg cgggtttgaa gttgtgaatg aaggcggccg cgatctgggc gaccacggct
     1621 tcgaagcgct cgtcccagcc ctgctcccgc gcgtagagca cgccgtggcg attgaccacc
     1681 caaccgatgt cgccgggttg gtgaggccgc agcacgatgc caggaccgcg ctccacgcgt
     1741 ccgcctagga tgcgtgtaat cgccgccatg gctttcacga cgcttgcctg ctcaccgcgg
     1801 gaaagctgtt tcagcaaggc tgccacggct tgactggctg accggtcgag cggccgaaaa
     1861 acgtcctggc cttttctggt caaggccagg tgactctgcc tccgatcgcc cacggaacga
     1921 gttcgcccaa ccaggccgcg cttgcggaag cggagtagga cacggctcag gtagccggcg
     1981 tcgagaccga ggtctgtggc gatttccgcc gccaccggcg accggcggtg tgccagctca
     2041 tagagcacgc ggacctccgt cagcgaaaac gggctattaa gatggccttc gctcagcagg
     2101 ccgattttgc gcgtatagaa acggttgaaa ctccggacgg cccgcacatg cttttcgagt
     2161 accggcatga gtgccattgt gaaacgaatt agttgactct gtcaaccaat cctcgggccg
     2221 ggcctcggac ccgatgccga gccatgcgat catgagagag tatgacgaga cgaattctgc
     2281 tgctggttgg cgtgatcctg ttggctggct gcggcgccaa aacgcaaacg caaggacaga
     2341 cgaagcgtta tgcgatggaa ggcgaaatca aatctctcga ttccggcgca aaaaccgcca
     2401 gcatcaacac aggcaaaatc gaaggctgga tggaagccat gaccatggaa taccccgtca
     2461 agcccgatgc ggaattcgcc aaactgcacg taggcgacc
//
LOCUS       DASQCV010000775         4822 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1325295, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000775 DASQCV010000000
VERSION     DASQCV010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4822
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1325295"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            222..542
                     /locus_tag="VEQ16_12185"
     CDS             222..542
                     /locus_tag="VEQ16_12185"
                     /inference="COORDINATES: protein motif:HMM:NF012339.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HYP64645.1"
                     /translation="MARITYIDATGAEYIIEADAGQTLMQAAVSNGIHGIVAECGGNC
                     ACGTCRIYIDEAWRERIGEASDIEEATMEGREDETPGRRLSCQIKVTAQMDGLIVRTP
                     ESQW"
     gene            complement(545..1339)
                     /locus_tag="VEQ16_12190"
     CDS             complement(545..1339)
                     /locus_tag="VEQ16_12190"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HYP64646.1"
                     /translation="MDFSTCSAIVSGGAGGLGGATSRRLVELGIGVVVFEPELSRAAA
                     LADELGPRAVGVAGDHNNEADVKRAIEAARALGIFSINVNAAGVAITAPATATADGTP
                     HDMAIFKAMIELHLFGPFNMSRLCAAAFATNAPDADGQRGVIINTASTAAWDGQAKQA
                     AYSAAKAGIAGMTTAMARDLAEIGVRACAIAPGPFSTPRLEQAPQALKDHLVKNVAFP
                     KRLGRASEYASLVEAILRTPFLNGQTIRLDGALSTPLTDMNAAPRG"
     gene            complement(1381..1689)
                     /locus_tag="VEQ16_12195"
     CDS             complement(1381..1689)
                     /locus_tag="VEQ16_12195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64647.1"
                     /translation="MQVKFKPAENFVPNAEQTAAPAKPVETAAPARFSVDASKIGDLL
                     GNNAARAVLDKHFPGISTNPQIGMAKGMTLRAVSAFAPDQFSREALDAVNAELARLPA
                     "
     gene            1673..1873
                     /locus_tag="VEQ16_12200"
     CDS             1673..1873
                     /locus_tag="VEQ16_12200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64648.1"
                     /translation="MNFTCKAETCHVHVDPDYFGKLPSISGDENDLLDSTSCRNEFSR
                     LSCQLRLTPELDGLRVTIAAED"
     gene            complement(1888..2862)
                     /gene="fdhE"
                     /locus_tag="VEQ16_12205"
     CDS             complement(1888..2862)
                     /gene="fdhE"
                     /locus_tag="VEQ16_12205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004272293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HYP64649.1"
                     /translation="MRQGGAAPTGKWQGSASGGVTAPDAIILPTPATRFAVTSMRLKN
                     LSAGHPMRDWLTFMAQLAAAQHQAVMALSTLPIPTLDEIDLATSAGMPPLTTMSHRRA
                     PAWQDGLARILDAMALVELPDQAREVAMQLRAKPSDEMEHLADQFLLQHVDIADAGAA
                     LYIAAALQVYLTALAARLPVERLHLLPQRGLCPCCGATPSAGLITATGKTPGARYLYC
                     SLCSTSWNHVRATCITCGESRQIVLESIEGDESAVKAETCGSCGSYAKLIYQKQDPQA
                     DPYADDFATLGLDILAAEAGWSRHAPNPLVLVGRGEAQDGKTMAGSLQ"
     gene            complement(2873..3544)
                     /locus_tag="VEQ16_12210"
     CDS             complement(2873..3544)
                     /locus_tag="VEQ16_12210"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019463346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009326 - formate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009061 - anaerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HYP64650.1"
                     /translation="MSYPRGTIVRHNTFARVNHWITGICFVLLMLSGLAMFHPLFFWL
                     SGLFGGGQWTRAVHPWIGVILMISYLGLIIQFWRDNMPSQDDVRWMQKIDRVLINEEE
                     GVPEVPRFNAGQKFVFWSMALFVPVLFFTGIIIWDYYFSSYTPIEVQRIALLVHSLLA
                     IAAIIVWIIHVYAALWVRGSMRAMTQGYVTPGWAWRHHRKWFRSLVASGSRGPVPGSN
                     RDLGK"
     gene            complement(3541..4452)
                     /gene="fdxH"
                     /locus_tag="VEQ16_12215"
     CDS             complement(3541..4452)
                     /gene="fdxH"
                     /locus_tag="VEQ16_12215"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003625431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0045333 - cellular respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HYP64651.1"
                     /translation="MNDLQSQNYIRISATTLTPPSARANEAEVAKLIDVSRCIGCKAC
                     QAACMEWNDLRQEVGSFEGSYENPADLSPDVWTLMRFNEWENEQGGLEWLIRKDGCMH
                     CEDPGCLKACPAPGAIVQYANGIVDFISANCIGCGYCVKGCPFDIPRISHKDHKSYKC
                     TLCSDRVAVGLEPACVKACPTGAIMFGTKSDMKDWAQERIVDLQSRGFENAGLYDPPG
                     VSGTHVMYVLHHADKPEIYSGLPKDPHISSFVQFWKGLIKPIAIAGVAFTALAGFFHW
                     ISTGPNEVQPEDDDHAKELMESGREPK"
     gene            complement(4463..>4822)
                     /locus_tag="VEQ16_12220"
     CDS             complement(4463..>4822)
                     /locus_tag="VEQ16_12220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014528148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin dinucleotide binding
                     domain-containing protein"
                     /protein_id="HYP64652.1"
                     /translation="HFWTKHALINAILQPEQFVEVGEALANEKGITQGSWVRVSSKRG
                     VIVCKAYVTKRIKPLTIDGKETHVIGIPLHWGFTGQARKGYAANTLTPSVGDANTQTP
                     EYKAFLVNIETTSPPAG"
BASE COUNT          926 a         1464 c         1495 g          937 t
ORIGIN      
        1 ccgaataaac gtcacatcgc cttcagcctc ggcaaacata tgtgccttgg ccaattcatc
       61 gcacgcgcgc agttgcagga ggccttgcac cagattccac agcgcctgcg ccatccccgc
      121 ctggccggtg agatacgctg gcggccttac cctggctcct gggggttgaa gggcctgccg
      181 atcgaatgtg aacccgcaga gtccttggct ggagtttgag tttggccagg atcacctata
      241 tcgatgccac cggagcggaa tatataatcg aagccgacgc gggccagacg ctgatgcagg
      301 ccgctgtcag caacggtatc cacggcatcg tggctgaatg cggcggcaat tgcgcctgcg
      361 gcacctgccg aatctatatc gatgaagcct ggcgcgagag aattggtgag gcctcagata
      421 tagaagaagc caccatggaa gggcgtgagg atgaaacacc cggccggcgg ctctcttgcc
      481 agatcaaggt gacggcgcaa atggatgggc tcatcgtccg tacgcctgag agccagtggt
      541 aggcctagcc gcgcggcgcg gcgttcatgt cggtaagtgg cgtggaaagc gcgccgtcga
      601 gcctgatggt ctggccattg aggaagggcg tgcgcaggat ggcttcgact agcgaggcat
      661 attctgacgc gcggccaagg cgtttcggaa aagcgacatt ttttacaaga tgatctttca
      721 acgcctgcgg cgcctgttcc agccgcggcg tcgagaacgg gccgggtgcg atggcgcagg
      781 cgcgcacgcc gatctccgcc aggtcgcgcg ccatggcggt cgtcatgccg gcaatgccgg
      841 ccttagcggc ggaataggcg gcctgcttgg cctgcccgtc ccaggcggcc gtggaggcgg
      901 tattgatgat gacgccccgc tgcccgtccg cgtcgggcgc gttggtggca aaagctgcag
      961 cgcagaggcg cgacatgttg aatggcccga acagatgcag ctcaatcatc gccttgaaga
     1021 tcgccatgtc atgtggcgtg ccatcggcgg tcgcggtcgc tggggcggta atggcgacgc
     1081 ccgcggcgtt gacattgatg gagaagatgc cgagcgcgcg cgccgcttcg atggcgcgct
     1141 tcacatccgc ttcgttatta tggtcgcccg ccacccccac ggcgcggggg cccagctcat
     1201 cggcaagggc ggcggcgcgg ctgagctcgg gctcgaacac cacgacgccg atgccgagtt
     1261 ccaccaggcg acgcgatgtg gcgccgccga ggccgcccgc gccgccgctg acaatggccg
     1321 aacatgtgct gaaatccatg acaatctccg gttcgtcaga gggtggcgcg ggccgggctt
     1381 ttacgccggc agccgggcga gttcggcatt caccgcatcg agcgcctcgc gcgagaactg
     1441 gtccggcgcg aaggccgaga ctgcacgcaa ggtcatgcct ttcgccatgc cgatttgcgg
     1501 attcgtgctg atgccgggga aatgcttgtc cagcacagcg cgcgccgcgt tattcccgag
     1561 caggtcaccg attttcgagg catcgactga gaagcgggcg ggtgcggcgg tttccacagg
     1621 cttggctggg gctgccgttt gctctgcatt cggaacaaaa ttctcggccg gcttgaattt
     1681 cacctgcaag gcggagacct gtcacgtcca tgtcgatcct gactatttcg gcaagctgcc
     1741 atcgatcagt ggcgacgaga atgatctgct cgacagcacg tcctgccgta acgaattttc
     1801 ccgcctgtcc tgccagctgc gcctaacgcc agaattggat gggctgcgcg tgacaattgc
     1861 cgcggaggat tagccccgct gtcccgccta ttgcaggctg cccgccatgg tcttgccatc
     1921 ctgtgcctcg ccgcgcccga ccagcaccag gggatttggc gcgtggcgcg accagcctgc
     1981 ttccgcggcc aggatatcca gccccagcgt cgcgaaatca tccgcataag gatcggcctg
     2041 cggatcttgc ttctgataga tcagcttcgc atagctgccg cagctgccgc aggtctcggc
     2101 cttcacagcg ctttcatcgc cttcgatgga ttcaagcacg atctgacggg actctccgca
     2161 tgtgatacat gtggcacgga catggttcca ggatgtcgag caaagcgagc agtaaagata
     2221 gcgcgcgccg ggtgttttcc ccgtagcggt gatcagccct gcgctcggcg tcgcgccgca
     2281 gcaggggcac agtccgcgct gggggagcag atgcagccgc tccaccggca gccgcgccgc
     2341 gagcgccgtc agatagacct ggagcgcggc ggcgatgtag agagccgcgc ctgcatcggc
     2401 gatatcgaca tgctgaagaa gaaactggtc tgcgagatgt tccatctcat cggatggctt
     2461 cgcgcggagt tgcattgcca cttcgcgcgc ctggtcaggc agctctacca gcgccatggc
     2521 gtcgagaatg cgcgccaagc catcctgcca cgcaggggcg cgcctatggc tcattgtggt
     2581 gagcggcggc atgccggcgc tggtcgcgag atcgatttca tccagcgtag gaataggcaa
     2641 agtgctcagc gccatcaccg cctgatgctg tgcggcggcg agctgtgcca tgaaggtgag
     2701 ccaatcccgc atcggatgac ccgcagagag attcttcaac cgcatcgatg ttacggcaaa
     2761 acgtgtggca ggagtaggca agatgattgc atcgggcgcg gttacgccgc cgcttgccga
     2821 tccttgccat ttgcccgtgg gcgccgcccc gccttgcctc atgccatcgc tctcattttc
     2881 ctaagtcgcg gtttgaacca ggaacaggcc cgcgcgaacc gctcgcgacg aggctccgga
     2941 accatttgcg atgatgccgc caggcccagc ccggcgttac atagccctgc gtcatggcac
     3001 gcatggagcc gcgcacccac agcgcggcat agacatggat gatccagaca atgatcgcgg
     3061 cgatagccag caaactatga acgagcaagg cgatacgctg cacttcgatg ggcgtataag
     3121 aggaaaaata atagtcccag atgatgatgc ctgtgaagaa cagcaccggg acgaacaagg
     3181 ccatggacca gaacacgaat ttttgacccg cattgaagcg cggcacttcc ggcacgccct
     3241 cctcctcatt gatgagcacg cggtcgattt tctgcatcca tcgcacatca tcctggctcg
     3301 gcatgttgtc gcgccagaac tgaatgatca ggccgagata ggagatcatc aggatcaccc
     3361 cgatccaggg atgcaccgcc ctcgtccatt gcccgccgcc gaataggccg ctcagccaga
     3421 agaatagagg atggaacatc gccaggcccg agagcatcag caggacgaag cagatgccgg
     3481 tgatccagtg attgaccctg gcgaatgtgt tgtggcggac gatcgtccct ctggggtagc
     3541 tcattttggc tctctcccgg attccatcaa ttccttggca tggtcgtcat cttccggttg
     3601 cacttcgttg gggccggtgc tgatccagtg gaagaatccc gcgagcgcag tgaaggccac
     3661 gccggcgatg gcgatgggct tgatcaaccc cttccagaat tgcacgaagc tgctgatatg
     3721 cgggtccttg ggtaaaccgg aatagatttc cggcttgtcg gcatggtgca gcacatacat
     3781 cacatgggtg ccgctcacgc cgggcggatc gtatagcccg gcattctcga atccgcgcga
     3841 ctgcaaatcc acgatgcgct cctgcgccca atccttcatg tcggatttgg tgccgaacat
     3901 gatggcgccg gtcgggcagg ctttgacgca ggccggctcc agcccgacag ccacacggtc
     3961 ggagcataaa gtgcatttat aggatttatg atccttgtga ctgatgcgcg gaatatcgaa
     4021 cgggcagcct ttcacgcaat agccgcagcc gatgcaattc gcgctgatga aatcgacgat
     4081 gccattggca tattgcacga tcgcccccgg cgccgggcag gctttcaggc agccgggatc
     4141 ctcgcaatgc atgcagccat ccttacggat gagccattcc agcccgcctt gctcattctc
     4201 ccattcattg aagcgcatca gcgtccacac atccgggctc aaatccgccg gattctcgta
     4261 gctgccttcg aaacttccga cttcctggcg cagatcattc cactccatgc aggccgcctg
     4321 gcaagccttg cagccgatgc agcgcgatac atcgatgagc ttcgccacct ccgcctcatt
     4381 ggcacgcgcg gaaggcgggg tcagagtcgt ggccgagatg cggatataat tttgcgattg
     4441 cagatcgttc atcgattgca cctcatccgg ctggtgggct agtggtttcg atattgacga
     4501 ggaaggcctt atattccggc gtttgcgtat tggcgtcgcc caccgatgga gtgagcgtgt
     4561 tcgcggcgta gcccttgcgc gcctggccgg tgaaccccca gtgcagcgga atgccgatga
     4621 catgggtttc cttgccatcg atggtgagcg gcttgatgcg cttggtgaca taggccttgc
     4681 acacgatcac gccgcgcttg gacgagacgc gcacccagct gccctgcgtg atgcctttct
     4741 cattggccag agcctcgccg acttcaacga attgctcagg ctggaggatc gcgttgatca
     4801 aggcatgttt ggtccagaaa tg
//
LOCUS       DASQCV010000776         1952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_1491328, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000776 DASQCV010000000
VERSION     DASQCV010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1491328"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1385)
                     /locus_tag="VEQ16_12225"
     CDS             complement(<1..1385)
                     /locus_tag="VEQ16_12225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64653.1"
                     /translation="MVDFQVPTPGGASYVAPNVQFNWLGNLLDQYTGGMQQAKAQQSM
                     NAFPQGVPIDPRTGQPDINAIANTAARIGGLPAVQQYLPFLYGAQQNQQLANVLTGGG
                     QPQAPPAPAPNNAASPQTLTPAPVSRGTQAAPAAPSAPFMGGQPVAQGDQAPDNLRSI
                     VTESFGPDRDMSRFIPGFARMMNVDADQPLSDNQARDVRFRLGQYKIARGEGQPMVGG
                     NRPQVGVSEDVSQPTQAVSAAEQNVNAPLARQAQAETLAAENSPEVQALRQEAKRNRA
                     AGIYASDPRQGGTPEKGKIFTDNADKIDARADRLVEARKAAAEPTVEQKGARDIALID
                     QARAKTIAEEEAKASLKEYTGIQARAQNYEGSMKRYLGVIKGILNSPGVYTGIGAEAA
                     LDFNKIKAIFGDTRAAALQEAMKKGTSQSVLDQITQQREEMSGSGLTAVRIFAQQLQL
                     MMNASPSLETT"
     gene            complement(1389..1877)
                     /locus_tag="VEQ16_12230"
     CDS             complement(1389..1877)
                     /locus_tag="VEQ16_12230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64654.1"
                     /translation="MALQNWGQDYANQQYGNWVNRLTPYLQQQVQGAGGIAGVNQGLG
                     SALNANQMALGTQLGGNQMNLGTQLLGSYTGQGQAGMQGQAAIGAAQANALLANLQAS
                     QNEWNAIGGGLNLFSKLAGFGGGGGFSGGSPGGGALFGSPNWNPVSWVMGGSGGPNAI
                     TG"
BASE COUNT          310 a          625 c          588 g          429 t
ORIGIN      
        1 aaggtggtct ctagcgacgg cgaggcattc atcatcaatt ggagctgctg ggcgaagatg
       61 cggaccgccg tcaatccgga ccccgacatt tcctcgcgtt gctgagtgat ctggtcaagg
      121 acgctctgcg aggtgccctt cttcatggcc tcctgcagcg ccgccgcccg cgtatcgcca
      181 aagattgcct tgatcttgtt gaagtccaaa gccgcttcag cgcctattcc agtataaacg
      241 cctggactgt tgagaatacc cttgatgacc ccaagatatc gcttcatgct cccttcgtag
      301 ttctgagcac gagcctgtat cccagtgtat tccttgagcg atgcttttgc ttcttcttca
      361 gctatagtct tggcacgcgc ctgatctatt agcgcgatat ctcttgctcc tttctgctct
      421 acggtcggct ctgctgcggc cttgcgtgcc tcgactagcc gatcggccct ggcgtcaatc
      481 ttgtccgcat tgtcggtgaa aatcttgccc ttctcgggcg tgccgccctg tcgggggtcg
      541 gacgcataga tgccggccgc tcggttgcgc ttggcttcct gcctcaatgc ctggacttcc
      601 ggcgagtttt ccgccgcgag ggtttccgcc tgagcctgcc tggccagcgg tgcattgacg
      661 ttctgctctg ctgcgcttac ggcttgcgtg ggctgtgaaa catcctcgct gacgccgact
      721 tgcggccggt tgccgcccac catgggctgg ccttcgccgc gcgcaatctt gtactgaccg
      781 aggcggaacc gaacatcgcg cgcctgattg tccgataacg gctggtcggc atcgacgttc
      841 atcatgcggg caaagccggg aatgaaccgg ctcatgtccc gatctgggcc aaagctctcc
      901 gtcacaatgc tgcgcaagtt atcgggcgcc tgatcgccct gtgctaccgg ctggccaccc
      961 atgaacggag cagatggcgc ggccggggca gcctgtgttc cacgtgaaac gggcgcgggc
     1021 gtcaaggtct gcggggaagc ggcattgttc ggcgccggtg ccggtggagc ttgtggctgg
     1081 ccgccgccgg tcaaaacgtt ggccaactgc tggttttgct gcgctccgta gaggaacggc
     1141 aagtattgct gcactgccgg gagcccgccg atgcgtgccg ccgtgttggc gatggcattg
     1201 atgtcgggct gcccggtacg cggatcgatc ggcacgccct ggggaaaggc gttcatcgac
     1261 tgctgggcct tggcctgctg catcccgccc gtgtactggt caagcaggtt tccgagccaa
     1321 ttgaactgca cgttcggtgc gacatagctc gcaccgcctg gggtcggaac ctgaaagtca
     1381 accacgaatc accccgttat tgcgttcggg ccgccgctac cgcccatcac ccatgaaaca
     1441 ggattccagt tgggagaacc gaacagggct cccccgccag gggagccccc actaaaaccc
     1501 ccgccaccgc cgaatcctgc cagcttgcta aaaaggttga gtccgcctcc gatggcgttc
     1561 cattcgttct ggctggcctg caggtttgcc agcagggcgt tcgcctgcgc ggcaccgatc
     1621 gccgcctggc cctgcatccc agcctggccc tgtccggtat agctgccgag cagttgcgtg
     1681 cccaggttca tctggttgcc gccgagctgc gtcccgagcg ccatctggtt ggcgttgagc
     1741 gcggatccga gcccctgatt gacgccggca ataccgccag caccttgaac ctgctgctgc
     1801 aaataggggg tcagccggtt gacccaattg ccatattgct gattggcgta gtcctggccc
     1861 cagttctgca gggccatggc cgtgttgccg gacccgagat agcccttgtt ggcggcatcg
     1921 agaagcgcgg cattggtacc ctgctacagc cc
//
LOCUS       DASQCV010000777         4702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2981569, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000777 DASQCV010000000
VERSION     DASQCV010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 4702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4702
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2981569"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(312..548)
                     /locus_tag="VEQ16_12235"
     CDS             complement(312..548)
                     /locus_tag="VEQ16_12235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64655.1"
                     /translation="MNMPYLQDLTIRGWGVFRDSPWHLAGVYYTEAQATAKASQLGNE
                     YKIAYGENRDSTSDFISLEQGFHGLSQMAATRAG"
     gene            940..3096
                     /locus_tag="VEQ16_12240"
     CDS             940..3096
                     /locus_tag="VEQ16_12240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012976750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3141 domain-containing protein"
                     /protein_id="HYP64656.1"
                     /translation="MQSVQDYWLDAWQRSVLMLDVLRERGNMFLEQSHKNAPNVLTFK
                     AELVIDGRTLRHPVNYVLVRIIPPEGTKLDPAKPPIIVVDPRAGHGPGIGGMKQDSEI
                     GKALAAGHSCYFIGFLPKPVPGQTIEDVARAEAHFVEEVARLHPEAEGKPIIIANCQA
                     GWQIMMMAAMRPDLTGPIMLAGTPLSYWAGVRGKNPLRYLGGILGGTWMTALAGDLGH
                     GIFDGASLVANFESLNLANTYWTKPYNVYAKVDTEGERFLDFETWWGNPVLLNAEEMQ
                     WIADNLFVGNRLSTGEIRNRDGVRVDLRNIKSPIIIFCSWGDNITPPHQALDWVLDLY
                     EHEREIIENGQTIIYTMHQTIGHLGIFVSGKVATKEHGEFVSAMELIDLMPPGLYEAV
                     ITEVDEATENRELVHGRYLFRLEMRTLDHIRAIGGNDEADERRFATAARVSDVNLGLY
                     RTLAAPALRAAVSEPLAEALRDMHPNRLRFAMFSDRNPLMRPVKSTAEAVRASRKPAA
                     AGNPFLAMQEEMSSWIEWSLQISNEIRDTMMEASFLNVYGSRLLQALTGLNAAPGEKP
                     RRIERDLMREANTAQLRAQLEHKFELGGVDEALARALFYVRLSEGRVDERGFAVFRLL
                     RASRPAAQRLSSAQLKAMIKEQYLLMRMDGERAVDAIPKLLGGGQVDPAAALAALRQV
                     LSARGALTEDEKKRLARIETLFAAPRQELTQVAEIG"
     gene            3235..4575
                     /locus_tag="VEQ16_12245"
     CDS             3235..4575
                     /locus_tag="VEQ16_12245"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012975907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HYP64657.1"
                     /translation="MTKQLHLGAFMRPVGIHTGWWRYPGAYADANFNLHHMVRFIQKL
                     EEGRFDAFFMADHMALLNMNIAALRRSATVTSFEPFTLLSALAMVTQRIGLVATATTT
                     FDAPFHIARRFASLDHISQGRAGWNIVTTSNPDAALNFGLDDHMAHDERYRRAREFFD
                     VVTGLWDSFADDAFLRDQESGIFFDPAKLHTLGHKGEFFSVRGPLHVARPVQGWPVIV
                     QAGASEAGRQLAAETAEVIFGSARDIEDGRSFYADIHNRMRALGRADDSLKILPAALV
                     ITGATKEEAEQKEKLLDSLVHPDSSLPNLSMRLGVDASRFNLDAPLPELPETNDSKSA
                     QASLIALARAQNLTVRQLAQIVGGYGGLKFVGTPVQIADSMQEWLETKASDGFNIMFH
                     TVPQGLDEFVDLVVPELTRRGVFREAYTGTTLREHLGLQRPANRFFAPQARAAE"
BASE COUNT          906 a         1398 c         1437 g          961 t
ORIGIN      
        1 ctgaggctct gctgcctcga cgattgtctt tgtcagttta ggcaaattcc acctcgacgg
       61 cgaaaaaact cacaaaaaaa ctcaccaaat actcacctaa aatagtaaag aaggggtggt
      121 tctggcgaag tatagcgaaa atgccctttt atgaaaataa tgtttttcag ttacttatcg
      181 tacaatttcg taccctggcg aaggtttggg aacccaccgg tcaatcctcc gaaggcaaag
      241 gtcgcgcgtt cgaatcgcgc cgggtccgcc atccccctat ttttcgtcac gccgcgacta
      301 tggcggaacg cctagccggc gcgggtggct gccatttgcg acaggccgtg gaagccctgt
      361 tccagggaga tgaaatcgct cgtgctgtcg cggttctcgc cataggcgat tttgtactca
      421 ttccccaatt gggaggcttt cgcggtggcc tgcgcctcgg tgtagtacac gccggccaaa
      481 tgccatgggc tgtcccggaa taccccccag ccgcgaatgg tcaaatcctg aagatagggc
      541 atattcatct ctcccgcatt caacttcata tatttagtcc aaactgccgc gagatgagcg
      601 gctaacaggc tacattttta ccatgggaag cgccgccgcg tcacgggctt cgaaccttaa
      661 tccttaataa tactagcccc ggcgccggca agcgagattg atccgcgtca aaagcctaat
      721 tcttgctcct ttctcgcatt gaatgggccc aaaaacaaaa catatatccg caggcggatg
      781 agatggcgcc gccgcttgat ggcgcgaccc gcgcctatgc agtgaaatgg cgcagtaaaa
      841 tggcagtgga ccgtattgcg gcttgccata ccggtccggg tttcagcttg ttggattgat
      901 aaaccgcggg aggcttccat ggtgtctggc ttgccgaata tgcaatctgt tcaggattac
      961 tggctggatg cctggcagcg ctcggtcctg atgctggatg ttctgcgcga gcggggcaac
     1021 atgttcctcg aacagagcca caaaaatgcg cccaatgtgc tgacattcaa ggcggaactc
     1081 gtcattgacg gccgcacatt gcggcatccc gtcaattatg tgctggtgcg catcatcccg
     1141 ccggagggga cgaagcttga tccggcaaag ccgcccatta tcgtcgtgga tccccgcgcc
     1201 gggcatgggc caggcattgg cgggatgaag caggatagcg agatcggcaa ggcgctcgct
     1261 gcgggccata gctgctattt catagggttt ctgccaaagc ccgtgccggg tcagacgatc
     1321 gaggacgtcg cccgcgccga ggcgcatttt gtcgaggagg tggcgcggct gcacccggag
     1381 gccgaaggca agccgattat catcgccaat tgccaggcgg gctggcagat catgatgatg
     1441 gcggcgatgc gcccggacct gaccggcccc atcatgctgg cggggacgcc tctatcctac
     1501 tgggccggcg tgcgcggcaa aaatccgctc cgctatctgg gcggcattct gggcggcacc
     1561 tggatgacgg cattggccgg cgatctcggc catggcattt ttgatggcgc ctcgctggtg
     1621 gccaatttcg aatcgctcaa tctcgccaat acttattgga ccaagcccta taacgtgtac
     1681 gcgaaagtcg atactgaagg ggaacggttt ctcgatttcg agacctggtg gggcaatcct
     1741 gttctgctca atgctgagga gatgcaatgg attgccgata atctgttcgt cggcaaccgg
     1801 ctctccaccg gggaaatccg caaccgcgac ggggtgcgtg tcgatctgcg caatatcaag
     1861 tcgcccatca tcatcttctg ctcatggggc gacaatatca ccccgccgca ccaggcactg
     1921 gattgggtgc tcgatcttta cgagcatgag cgcgaaatca tcgagaatgg tcagacgatc
     1981 atctacacca tgcatcagac catcgggcat ctcggcatct tcgtgtcggg caaggtggcg
     2041 acgaaggagc atggcgaatt cgtctcggcg atggaattga tcgatctgat gccgcccgga
     2101 ttatatgaag ccgtgatcac ggaagttgac gaggcgaccg agaacaggga gcttgttcat
     2161 ggacgctatc tgttccggct cgagatgcgg acgctggacc atatccgtgc aattggcggt
     2221 aatgacgaag cggatgagcg ccgctttgcc acggcggcgc gagtgtcgga tgtcaatctc
     2281 ggcctgtacc gcacgctggc ggcaccggcc ttgcgcgcgg cggtgagcga gccgctggcc
     2341 gaggcgctgc gcgacatgca tcccaaccgg ctccgttttg cgatgttttc cgaccggaat
     2401 ccgctcatgc ggccggtcaa gtcaacggcg gaggccgtgc gcgccagcag gaaaccggcc
     2461 gccgccggta atccttttct ggccatgcag gaggagatgt cgtcctggat cgaatggtcg
     2521 ctgcagatat cgaatgaaat tcgcgacacg atgatggagg cctcgttcct gaatgtctac
     2581 gggtccaggc tcctgcaggc gctgaccggg ctgaatgcgg caccgggtga gaagccgcgc
     2641 cggatcgagc gcgacctgat gcgtgaggcc aataccgcgc agctgcgcgc acagctggag
     2701 cacaaattcg agcttggcgg tgtggacgag gcgctggcgc gcgcgctctt ctatgtccgc
     2761 ctgtctgagg ggcgtgtcga tgagcggggc ttcgcggttt tccggctgct tcgcgcctcg
     2821 cgtcccgcgg cgcagcgcct cagttcggcg cagctcaagg cgatgatcaa ggagcaatat
     2881 cttctcatgc gcatggatgg ggagcgtgca gttgatgcga ttccaaaact tcttggcggc
     2941 ggccaggttg acccggcggc tgcattggcg gcgctgcgcc aggtcctctc cgcgcgcggc
     3001 gctttgacgg aggacgagaa aaaacgcctg gcgcgcatcg aaaccttatt tgccgcgcca
     3061 cggcaggaat tgacccaggt ggcggagata ggctgacaaa acctgcgttg tcctggaaca
     3121 attttgttaa atcttgccgg cccatcttgg catggcgccg cgcctgccta actgaaggca
     3181 aaattccgtt tttgccgtcc cgccgcgcga cgggcttttc gtcaggagca agatttgacc
     3241 aagcagcttc atctcggcgc cttcatgcgg ccggttggca ttcacacggg ctggtggcgc
     3301 tatcccggcg cctatgcgga tgccaatttc aatcttcacc acatggtccg cttcatccag
     3361 aagctggagg aggggcggtt cgacgccttt ttcatggcgg accatatggc gctgctcaac
     3421 atgaacattg ccgccctgcg ccgcagcgcc acggtaacct cattcgagcc ttttaccttg
     3481 ctgtccgcct tggcgatggt cacgcagcgc atcgggctgg tcgccaccgc caccaccacg
     3541 ttcgatgccc ccttccacat cgcccgccgt ttcgcctcgc tcgaccatat cagccagggc
     3601 cgcgcggggt ggaacatcgt caccaccagc aaccccgatg ctgcgctcaa ttttggcctc
     3661 gacgaccata tggcgcatga cgagcgttac cgccgcgccc gtgagttttt cgatgttgtc
     3721 accgggctgt gggatagttt cgcggatgat gcgttcctgc gcgaccagga gagcggcatt
     3781 ttcttcgacc cggcaaaact ccacacgctc ggccataagg gcgagttctt ctccgtgcgc
     3841 ggcccgcttc atgtggcccg gccggtgcag ggctggcccg tcatcgtgca ggccggcgcg
     3901 tccgaggcgg gacgccagct tgccgccgaa acggcggaag tgattttcgg ttcggcgcgc
     3961 gacatcgaag acggccgctc cttctatgcc gacatccata accgcatgcg cgccctcggc
     4021 cgcgcggatg acagcctcaa aattctgccc gccgcgctgg tgattaccgg tgcgacgaag
     4081 gaggaggcgg agcagaagga aaaattactg gacagccttg tgcatccgga cagctccttg
     4141 cccaacctct ccatgcgcct aggggtggat gcgagccgct tcaatctcga tgcgcctctg
     4201 ccagaactgc cggaaacgaa tgatagcaaa agcgcgcagg ccagcctcat cgctttggcg
     4261 cgcgcgcaga atctcaccgt gcggcagctc gcgcaaatcg ttggcggcta tggcgggctc
     4321 aaattcgtcg gcacgccggt ccagattgcc gattcgatgc aggaatggct tgagacgaag
     4381 gcatcggatg ggttcaacat catgtttcac accgtgccgc aggggctcga cgaatttgtc
     4441 gatctcgtcg tgccggagct aacgcgccga ggtgttttcc gcgaggctta cactggcact
     4501 acgctgcgcg agcatctagg cctgcagcgt ccggccaacc ggtttttcgc gccccaggcc
     4561 cgcgcggccg aataggtgcc gcggcctcag acggtcttgc cggcgcggcg ggcgcggatc
     4621 agctcggcaa aggcagggcc atggccaggg ctgtgatgca gctcccaggc attgccggcg
     4681 gcgaggctga gcccgtccgt gt
//
LOCUS       DASQCV010000778         1530 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2319600, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000778 DASQCV010000000
VERSION     DASQCV010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2319600"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1530
                     /locus_tag="VEQ16_12250"
     CDS             <1..>1530
                     /locus_tag="VEQ16_12250"
                     /inference="COORDINATES: protein motif:HMM:NF024486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AAA domain-containing protein"
                     /protein_id="HYP64658.1"
                     /translation="AAAGLLRRPTVDAAPDRLVLWEDLFRHASPAQREHLLELAKRQG
                     FLYAHQVPVATNGKKPLPGQEQAPAAEKLKRLVEGDPLPPVRPQPLTPWDEALDRLQR
                     EAVARALDTPDVAVIAGLPGTGKSRIVAEILTQAAQRGQRVLFLAPRTGAIDPVLEQI
                     GGRDVLFPLRCMEAGERPALLTPLVRSMTFAERVHKMGETVPGALQGKEAAEQRCQRR
                     RNEETVWPALRDLAGQGENLARQREELQQQQARVPGEVSDEAARIRAEALETSEVSKT
                     SEACPFATELLAEERRHQETLAEITTALNQVEKTEADSDAARIALEAEVQKLKPLALA
                     KQRGRWWTFAWWRATFRGNVIERLAEAQQRLEETSQALAGAREEGQSFHAKRRELEQE
                     HQQALKHLLKKEVDRRQTDLAVKETALDEAGRQLDLRWHAQIELLDREGARPAMLTTA
                     AVDLAFEHWQARCRQDEESRAFAQQWADTIQEAADTLAQRLPALANVVAGTMAGFLAD
                     K"
BASE COUNT          295 a          498 c          499 g          238 t
ORIGIN      
        1 ggctgccgcc gggctgttgc gccggcccac cgtcgatgcc gcccccgacc gcctggttct
       61 ctgggaagac cttttccgtc acgccagccc cgcacagcgc gaacatttgc tcgaactggc
      121 aaagcgccag ggtttcctgt acgcccatca agtgccggtt gccaccaacg gcaagaaacc
      181 gcttcccggt caagaacagg ctcctgccgc ggagaagttg aagcggctgg tggaaggcga
      241 ccctctgcca ccggttcgtc ctcagccctt gactccctgg gacgaagccc tggatcgctt
      301 gcagcgcgaa gcggtggcgc gggcattgga cacgcccgat gtggccgtca tcgccggcct
      361 gcccggcacc ggcaaatcgc gcattgtggc cgaaatcctt actcaggccg cccagcgcgg
      421 ccagcgcgtg ctgtttctgg ccccccgaac cggcgccatc gatccggttc tggagcagat
      481 cggcgggcgc gacgtccttt tccccctgcg ctgcatggaa gccggcgaac ggcccgcatt
      541 gttgacgcct cttgtccgct ccatgacctt tgccgaacgc gtgcacaaga tgggcgagac
      601 agttcctggc gccttgcagg gcaaagaggc cgcagagcag cgctgtcagc gccgccggaa
      661 tgaggaaacg gtctggcccg ccctgcgcga cctggccggc cagggtgaaa acctggcacg
      721 ccagcgcgag gaactacagc aacaacaggc ccgcgtgccc ggagaggttt ctgacgaggc
      781 ggccaggatc cgtgcggagg cattggagac ttccgaagtg tccaagactt cggaagcctg
      841 tccttttgcg accgaattgc ttgccgagga gcgccggcat caagaaaccc tggccgagat
      901 taccactgcc ctgaaccagg tcgagaagac cgaggccgac agcgatgccg cccgcatcgc
      961 actggaagct gaggtgcaaa agttgaaacc gctggctctg gccaaacagc gcggccgctg
     1021 gtggaccttt gcctggtggc gggccacttt tcggggaaac gtcatcgaac gcctggcgga
     1081 agctcagcag cgcctggagg agacgagcca ggccctggcc ggcgctcgcg aggaaggcca
     1141 gagtttccac gccaagcgtc gcgagctgga acaagagcat cagcaagcct tgaagcactt
     1201 gctgaagaaa gaagtggacc ggcgtcagac cgacctggcc gtcaaggaaa ccgccctgga
     1261 tgaagccgga cggcaactgg atctgcgctg gcatgcacag atcgagttgc tggaccggga
     1321 aggcgcccgc ccggccatgt tgaccacggc agccgtggat ttggctttcg aacattggca
     1381 ggcccggtgc aggcaggacg aagaaagtcg tgcctttgcc cagcaatggg cggacacgat
     1441 tcaggaggca gccgacacgc tggcccagcg cctgccggcc ctggccaacg tggtggccgg
     1501 caccatggcg ggttttcttg ccgacaagca
//
LOCUS       DASQCV010000779         1506 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_497232, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000779 DASQCV010000000
VERSION     DASQCV010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497232"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..408)
                     /locus_tag="VEQ16_12255"
     CDS             complement(<1..408)
                     /locus_tag="VEQ16_12255"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF002003.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003905 - alkylbase DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HYP64659.1"
                     /translation="MSCKTLERSFYVRPTVEVARALLGKILIHGSAQARIVETEAYLG
                     LADAAAHASRGRTPRTEVIFGPPGHAYVYLIYGMYECLNVVAEPEGQAGCVLIRSLEP
                     LKGIESMRRRRRGIDRIEQLANGPGKLTLAMGIT"
     gene            complement(398..1186)
                     /locus_tag="VEQ16_12260"
     CDS             complement(398..1186)
                     /locus_tag="VEQ16_12260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64660.1"
                     /translation="MKKLSLLLLSASLAAWAADFWQTKSFTAWDQKEVQKILTDSPWA
                     KKVSVDMPVGGGAAGNAGGGGGSRSGRGGGAAGGNNDPGISGGGAPGIAETAGAGGRG
                     GGGFGGGGGGDAPAAVAAPALPLLVTCRSALPVRQALAKVKYGAEAATSPDAKKLVED
                     PQQYYIISVAGLPGYLQPRDDEAKQALIKQSSLSAKGKDSLAPVDIQFGPDGRNLDAY
                     FIFPRMVQFGAEDKEIEFAAKAGGLTIKQKFNLKNMVINGKLEL"
BASE COUNT          273 a          454 c          484 g          295 t
ORIGIN      
        1 tgtgatgccc atagcgagag tcaacttgcc tgggccgttc gcgagttgtt cgatgcggtc
       61 gatcccgcgc cgccgccggc gcatcgattc aatgcctttc agcggctcta gagagcggat
      121 gagaacgcag ccggcctgcc cctccggctc ggcgacgaca ttcaagcatt catacatgcc
      181 gtagattagg tagacgtagg catggcccgg agggccgaag atcacttccg ttcgcggcgt
      241 gcggccgcgc gaggcgtggg cggcggcgtc ggcgaggccg agataagcct cggtttccac
      301 aatcctcgcc tgcgccgagc cgtgaatcag gattttgcct agcagcgcgc gcgccacttc
      361 cacggtgggg cgcacgtaaa acgaacgctc cagcgtttta cagctcaagc ttgccgttga
      421 tcaccatgtt cttgagatta aacttttgtt tgatcgtgag cccgcctgct ttagccgcga
      481 attcgatctc tttatcttcg gcgccgaact gaaccatgcg cgggaagatg aaataggcgt
      541 cgagattgcg gccgtcggga ccgaattgaa tgtcgaccgg cgcgagcgaa tccttgcctt
      601 tggcgctgag ggagctttgt ttgatcaagg cctgtttggc ttcatcgtcg cggggctgaa
      661 gatagccggg gaggcctgcc acggaaatga tgtaatactg ttgcggatct tccaccagtt
      721 tcttggcgtc cggcgacgtc gcggcttcgg cgccgtattt gactttagcg agggcctggc
      781 gaacaggcag agcggagcgg cacgtgacca gcagaggcag ggcaggcgcc gcaaccgcag
      841 caggggcgtc gcctcctcca ccgccgccga atccgccgcc tccgcggccg ccggcgcctg
      901 cggtttccgc aatgccaggg gcgccgccgc cggaaatgcc aggatcgtta ttgccgcccg
      961 cggccccgcc gccgcgcccg ctacggctgc cgccgccacc gcccgcattc ccagcggcgc
     1021 ctccgccgac gggcatgtcg accgaaacct tcttcgccca aggcgaatcg gtaaggatct
     1081 tttgcacctc tttctgatcc caagcggtga aggacttggt ttgccagaaa tcggcggccc
     1141 aagcggcgag cgaggcggag agcaagagca ggctgagctt tttcatcggt ttcaatccac
     1201 gcgtcctacg gacgcgatgt acagccagtt tacaatactt gttcggacgc ttggaccgtg
     1261 cgcttgtttg tcgccataga tattccctcg gagattaaag cgcggctgcg cgcgttcgtc
     1321 gatcggctgc ggcccacggc gaagctaagc tggagccctg cggacaattt acacgtgacc
     1381 acaaaattca tcggagagtg gccggaggaa cggcttggag agttgaagag cgcattggcc
     1441 ctagtgccga ggccgggccc tgtggaagtg gcggtgaggg ggctaggctg gtttccgaac
     1501 gcaaag
//
LOCUS       DASQCV010000780         3624 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_497474, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000780 DASQCV010000000
VERSION     DASQCV010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3624
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497474"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..740
                     /locus_tag="VEQ16_12265"
     CDS             <1..740
                     /locus_tag="VEQ16_12265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64661.1"
                     /translation="GGEKRGPNWLPTTPGSRKLFIRQGFDRWDEIPARFRIERTDMTT
                     PKPLPTPANMITAMTWAGDFVTGVMRDWPDWMFAHGGVDEHAPNAFPPEANTADDKKR
                     GRAVTNMHWQIAEDEALIIEFAAHEGLWMLTNMGVFCNSMDYLYRPISYTPSRSAVDA
                     DGKIRMVLAHDDPGFHNWIDTQGFIRGNLTYRHMLAGGPVPLTTKLVKHAALETALPA
                     NSARVTPEQRAAQLWARFNGIRQRYLL"
     gene            complement(737..1528)
                     /locus_tag="VEQ16_12270"
     CDS             complement(737..1528)
                     /locus_tag="VEQ16_12270"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HYP64662.1"
                     /translation="MTRGLFDLTGRVVLAAGANSGIGLGFLMGCAKQGADVVVWGRRE
                     DRNNQALEQLKAAGAGRVHQEAVNVASEQAVIGAFASSLTAMGRVDCVFANAGFTTHA
                     PSFPDMTSEMYHDLLNVNLHGSFYTLREAARHMRVRAQAGDPGGSIAVCGSLSIFQGR
                     QGMEHYAGAKGALAAMVKGMAVELGQYKIRVNMIAPGFIMTEMTDSSPQSEAVAKHFS
                     SITPLGRPGYPSDIEGPAAYLASDASIFHTGDILVVDGGRTVKGN"
     gene            complement(1535..2686)
                     /locus_tag="VEQ16_12275"
     CDS             complement(1535..2686)
                     /locus_tag="VEQ16_12275"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HYP64663.1"
                     /translation="MALTFDEVVNAAREKSGAPDPDKDSWREGLEILLSDIAKADALT
                     ERGWGIMKNRYVEALAARMQVDEFIRQNPAVTKAPVTRPVFILGMPRTGTTVVSYLMA
                     ADPANRSMLRWEAYQGGAPAAPGALKTDPRCLAELAKDEAMLKANPDIGAAHWEPGDG
                     PTECVHLVAQDFRSLMLAVLTMTPVYHDFMMFTDMTTAFEHRKRVLQCLQSTNGGRWV
                     LKMPSDSLFIRQIFKTFPDAKVIWTHRDPYATFASSVNMRGKSRLIFNKDSGLDYIHQ
                     YFPVQLAQHLSRPLEVSAERPDDIYHLYYDDMMADPLAQMKKIYAWLGDEWTADTQSG
                     MENWLQENPQGRYGVHTYSLAEWGFTKKELEPYFHDYLRVHPVATGQEA"
     gene            complement(2711..>3624)
                     /locus_tag="VEQ16_12280"
     CDS             complement(2711..>3624)
                     /locus_tag="VEQ16_12280"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HYP64664.1"
                     /translation="RASGICGTDLHFRHMGPRFDKPMALGHEFAGEVIEAGPNVKSYK
                     VGDRVAYNSNNSPADMGRGGECGGFSHYVALREVDGHVQSLCKVPDNVSLDHAALVEP
                     LSVAMHAVNRADPKPDETVAVFGVGPIGLGVVLGLRQRGVENIVAFDLSPLRRERAVA
                     LGAKVAFDPRGTKPKEILKELHGVGKIWGIDYPKTSLYFEVSGAPGLLAQLVDLANKR
                     SRIITVAMQRHPVTIDATRLMSKEVSLIGASGYPTEFPEVMEKLAKGEIDPEAMITHR
                     FPFGDFLNAFEVADNANEAAKVVLTFG"
BASE COUNT          712 a         1226 c         1007 g          679 t
ORIGIN      
        1 tcggcggtga aaaacgcggc cccaactggc tgcccaccac gccaggctcg cgcaaactct
       61 tcatccgcca gggctttgac cgctgggacg aaatccccgc ccgcttccgc atcgagcgca
      121 cggacatgac cacgccaaaa cctttgccca caccagcgaa catgatcacc gccatgacct
      181 gggccggcga tttcgtgacc ggcgtgatgc gcgactggcc ggattggatg ttcgctcatg
      241 gcggcgtgga cgaacacgcg cccaacgcat tcccgcccga ggccaacacg gccgacgaca
      301 agaaacgcgg tcgcgccgtt accaacatgc attggcagat tgccgaagac gaagccctca
      361 tcatcgaatt cgccgcgcat gaaggcttgt ggatgctcac caatatgggc gtgttctgca
      421 actccatgga ttatctctac cgccccatca gctacacgcc gagccgcagc gcggtggatg
      481 cggacggcaa aatccgcatg gtgctcgccc atgacgatcc cggtttccat aactggatcg
      541 acacgcaggg ttttatccgc ggcaacctca cctatcgtca tatgctggca ggcgggcccg
      601 tgccgctcac caccaagctg gtgaagcacg cggcgctgga aacagcactg cccgcaaaca
      661 gcgcacgcgt cacgccggag cagcgcgccg cacaattatg ggcgcgcttc aacggcatcc
      721 gccagcgtta tctgctctag ttgcccttca ccgtgcgccc gccatcgaca acgagaatat
      781 cgcccgtgtg gaagatggac gcatccgagg cgagatacgc cgccggcccc tcgatgtcgg
      841 acggatagcc gggccgcccc agcggggtga tggacgaaaa atgtttcgcc accgcctcac
      901 tctgcgggct gctatcggtc atctccgtca tgatgaagcc cggcgcgatc atgtttacgc
      961 ggatcttgta ctggcccagc tccaccgcca tgcctttgac catcgccgcc agcgcgcctt
     1021 tcgccccggc ataatgctcc ataccctggc gcccctggaa aatcgacagg ctgccgcaca
     1081 cggcaatcga tccaccgggg tcgcccgcct gcgcccgcac ccgcatatgc cgcgccgcct
     1141 cgcgcaacgt gtagaaggag ccatgcagat tcacgttgag cagatcgtga tacatctcgc
     1201 tcgtcatgtc cggaaaggat ggcgcgtgcg tggtgaagcc ggcattggca aacacgcaat
     1261 ccacccgccc catggccgtc agtgacgacg caaacgcgcc gatcaccgcc tgctcactgg
     1321 ccacattcac agcctcctga tgaacgcgcc cggcaccggc cgctttcaac tgctccagcg
     1381 cctggttgtt gcggtcctca cgccggcccc acaccaccac atccgcgccc tgtttggcgc
     1441 agcccatcaa aaacccaagt ccgatgccac tattggcgcc agcggccagc accacacggc
     1501 cggttaggtc gaaaagtcca cgtgtcatgt ctgatcaggc ctcctggccg gtggcaacgg
     1561 ggtgcacccg caaataatca tggaaataag gttcaagctc tttcttggta aaaccccatt
     1621 cggcgagcga atatgtatgc acgccataac ggccttgcgg gttttcctgt agccagtttt
     1681 ccatgccgct ctgcgtgtcc gccgtccatt catcacccag ccaggcgtag atcttcttca
     1741 tctgcgccag cggatccgcc atcatgtcat cgtaataaag atgataaata tcatccggcc
     1801 gctccgcgct cacttccagc gggcgggaga gatgctgcgc cagctgcacc ggaaaatatt
     1861 ggtgtatata atccaggccg gaatccttgt tgaagatcag ccgcgatttg ccgcgcatat
     1921 tcacggagga ggcaaaggtc gcgtaagggt cgcgatgcgt ccagatcacc ttcgcatccg
     1981 gaaaggtctt gaatatctgc cggatgaaca gcgagtccga cggcatcttc agcacccagc
     2041 gcccgccatt ggtggattgc agacattgca gcacccgctt gcgatgttcg aacgccgtcg
     2101 tcatgtccgt gaacatcatg aaatcgtgat agactggcgt catcgtcagc accgccagca
     2161 tcagcgaacg aaaatcctgc gccaccagat gcacgcattc ggtcggccca tcgcccggct
     2221 cccaatgcgc cgcacctatg tccgggttcg ccttcagcat cgcctcgtcc ttggcgagtt
     2281 ctgcgaggca gcgcgggtcg gttttcaacg cgccaggtgc ggcgggcgcg ccgccctgat
     2341 aggcctccca gcgcagcatg gagcggttgg cggggtcagc cgccatcaga tagctcacca
     2401 ccgtcgtgcc agtgcgcggc ataccaagga tgaaaaccgg ccgcgtcacc ggtgccttcg
     2461 tcactgcagg attttggcgg atgaattcat ccacctgcat gcgcgccgcc agcgcctcga
     2521 catagcggtt cttcatgatg ccccagccac gctctgtcag cgcatccgcc ttggcgatgt
     2581 cgctgagaag aatctccagc ccctctcgcc aggaatcttt atcgggatcc ggcgcgccgg
     2641 atttttcgcg tgcggcgttt acaacctcgt caaacgtcaa agccattttt attttgcctg
     2701 ttcttgttgt tcagccgaag gtcagcacca ctttcgcggc ttcgttggcg ttatccgcca
     2761 cctcgaaagc attgagaaaa tcgccgaagg gaaagcgatg ggtgatcatc gcctcggggt
     2821 cgatctcgcc tttcgccagc ttctccatca cttcaggaaa ttccgtggga tagccggagg
     2881 cgccgatcag gctgacctcc ttgctcatca gccgggtggc atcgatggtg acgggatggc
     2941 gctgcatggc gaccgtgatg atacggctgc gcttattggc gaggtcgacc agctgcgcca
     3001 gcaagccggg cgcgccgctg acctcgaaat agaggctcgt cttcggataa tcgatgcccc
     3061 agattttgcc gacgccatgc agctccttga gaatctcctt aggcttggtc ccgcgcggat
     3121 cgaacgccac cttcgccccc agcgccaccg cccgctcgcg ccgcaaaggc gagaggtcga
     3181 acgcgacgat attttccact ccgcgctggc gcagccccag cacaacgcca agcccgatgg
     3241 gcccgacgcc gaatacggcg acggtttcat ccggcttggg gtcggcgcgg ttgaccgcat
     3301 gcatggcaac cgacagcggc tccacgagcg cggcatggtc caggctcaca ttatccggca
     3361 ccttgcacag cgactgcaca tgcccatcca cctcgcgcag cgcgacataa tggctgaacc
     3421 cgccacactc gccgccgcgg cccatatcgg ccgggctgtt attggagtta taggccacgc
     3481 ggtcgcccac cttgtaactt ttcacattcg gcccggcctc gatcacctcg ccggcaaatt
     3541 catggcccag cgccatcggc ttgtcgaagc gcggccccat atggcggaaa tgcagatccg
     3601 tgccgcaaat gccgctggcg cgga
//
LOCUS       DASQCV010000781         1650 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2982512, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000781 DASQCV010000000
VERSION     DASQCV010000781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2982512"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..525)
                     /locus_tag="VEQ16_12285"
     CDS             complement(<1..525)
                     /locus_tag="VEQ16_12285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64665.1"
                     /translation="MRPEDLVTVEAEARSEVVRVQLNRFHMADPLDDLLRIGDGYRID
                     LGLTPRPVGARARYFDRWGPNRFERIGQLFLIRKGERVHARNEPGSGRSLACHIQPHL
                     IQRWFGDEMEWTDPCLEASLDLNAPAVKTLLRRMGEETLHPGFAHEILLDSIAVQLII
                     ELRRHFNQLNAERAS"
     gene            complement(598..1548)
                     /locus_tag="VEQ16_12290"
     CDS             complement(598..1548)
                     /locus_tag="VEQ16_12290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007437084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl acyltransferase"
                     /protein_id="HYP64666.1"
                     /translation="MNSPRIKFAHRAEAALVRALVALLRPLSPATASRLGAAVAGTIG
                     PLIPTSSVADINLRIAMPELDAPARRRIIKQCWQNLGATAAELVHLGEINEIPADAPG
                     IGFSILGWEEHVAPAIAALPKGGPVIFFTGHIGNWEILSPGAFARGIDMGFMYRAASN
                     PLVDDIFMRLREANGRKVTMFPKGGAGARAAYAHLLKNGHLGLLVDQKLDTGLELPFF
                     GHNAMTMDAMAAFALKFRCPVIPIYVKRTGPARLHIICEAPLPLPDSGDKNADMRSLT
                     LTMNQTLERWIRTNPGSWLWLHRRWPKPLYREMKAKLRGE"
BASE COUNT          270 a          458 c          630 g          292 t
ORIGIN      
        1 gctcgcgcgt tcggcgttga gctggttgaa atgccggcgc agctcgatga tgagctggac
       61 ggcgatggaa tcaagcagga tttcatgcgc gaagccggga tgcagcgtct cctcgcccat
      121 gcgccggagc agggttttca cggccggggc gttaaggtcc aggctcgctt ccaggcatgg
      181 gtcggtccat tccatctcgt cgccgaacca tctctggatg agatgcggct ggatgtggca
      241 ggcgagcgag cggccggagc cgggctcgtt gcgggcatgg acgcgctcgc ccttgcggat
      301 gagaaaaagc tgaccaatgc gctcgaaccg gtttgggccc caacggtcga aataacgcgc
      361 cctcgccccc acggggcgcg gcgtgaggcc cagatcgatc cggtatccgt cgccgatgcg
      421 gaggagatca tccagcgggt cggccatatg gaagcggttg agctgaaccc ggaccacctc
      481 ggaccgcgcc tcggcctcca ccgtcaccaa atcctcagga cgcatgatcc tcgccatgcc
      541 cggcaggtgg ctcccggccg ttgccgctgt caaggccgct gtgtccagga ggcggtctta
      601 ctctccccga agcttcgcct tcatctcccg gtagagcggc ttgggccagc ggcgatgcag
      661 ccagagccag ctgccggggt tggtgcggat ccagcgttcg agggtttggt tcatggtgag
      721 ggtgaggctg cgcatgtcgg cgtttttgtc gccgctgtcg ggcagaggga ggggggcttc
      781 gcagatgatg tgcagccggg cggggccggt gcgtttcacg tagatcggga tgacagggca
      841 gcggaatttg agggcgaagg cggccatagc gtccatggtc atggcgttat ggccgaagaa
      901 ggggagttcg aggccggtat cgagtttctg gtcgacaagc aggccgagat ggccgttttt
      961 cagaagatgg gcataggcgg cgcgggcgcc cgcgccgcct ttggggaaca tggtgacctt
     1021 gcggccattg gcttcccgca ggcgcatgaa gatgtcgtcc accagcgggt tggacgcggc
     1081 gcggtacatg aagcccatgt cgatgccgcg ggcaaaggca ccgggcgaga ggatttccca
     1141 attgccgata tggccggtga agaagatgac ggggccgcct ttgggcaagg cggcgatggc
     1201 gggggcgaca tgttcttccc agccaaggat gctgaagccg atgccggggg cgtcggctgg
     1261 gatttcgttg atttcgccaa gatggaccag ctcggcggcg gtggcgccga gattttgcca
     1321 gcattgcttg atgatgcggc ggcgggcggg ggcgtccagc tccggcatgg cgatgcggag
     1381 attgatgtcg gcgacgctgg aggtggggat gagcgggccg atggttccgg ccacggcggc
     1441 gccgaggcgc gaggcggtag cgggggagag cgggcggagc agggcgacga gggcgcggac
     1501 cagcgccgcc tcggcgcggt gggcgaattt gatgcgcggt gagttcattg cagcaggctg
     1561 ttccaggcgt cttcatcctc ccaggcgagc tgtgcctgca ccacgaggca ggcggtgcgc
     1621 agagcgggcg ggagcttgac gaaatctttc
//
LOCUS       DASQCV010000782         3523 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_826188, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000782 DASQCV010000000
VERSION     DASQCV010000782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3523
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_826188"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..383
                     /locus_tag="VEQ16_12295"
     CDS             <1..383
                     /locus_tag="VEQ16_12295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008493014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HYP64667.1"
                     /translation="FAVPGGPLDPRARGGNELIRQGAHLTESAADVLTALPAQIGPRQ
                     RRLPGFRQDTPVWNGPQDDQAALAQARAAVPALLGPEGMDVDELARRCQLSMAAMQAV
                     ILELELGGMVESLPGGRVTPPQDY"
     gene            418..3117
                     /gene="topA"
                     /locus_tag="VEQ16_12300"
     CDS             418..3117
                     /gene="topA"
                     /locus_tag="VEQ16_12300"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010666274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HYP64668.1"
                     /translation="MTDIVVVESPSKAKTINKYLGDSFRVLASFGHVRDLPAKDGSVR
                     PDEDFAMDWEADDRGAKQLAEIAKALKGAKTLYLATDPDREGEAISWHVQSVLAEKQA
                     LKGVKVERVTFNEITKSAVKAAMAHPRALDMPLIEAYLARRALDYLVGFTLSPVLWRK
                     LPGSRSAGRVQSVALRLVCEREAEIEIFRPREYWLVEATMLTPTGAPYPARLTHYQGK
                     KLDQFDLNDAAKAEAARAAVLAGHFKVAGVEKKRTKRNPPAPFITSTLQQEASRKLGL
                     SSQVTMRLAQQLYEGVDINGDTVGLITYMRTDGVQLAKEAVESMRGRIRSEFGGDYLP
                     AAPREYQSKAKNAQEAHEAIRPTDINLTPAKVASMLSSDQARLYELIYKRALACQMAA
                     AELDQTAVNLTDGKGQTLRATGSVLAFDGFLRLYHEDQDDPSDDEDARILPPIADGDP
                     AKTGKVEATQHFTQPPPRYSEASLVKKMEELGIGRPSTYASILSVLRDRNYVRMENKR
                     FVPEDRGRLVTAFLTSFFAHYVDTGFTAGLEDQLDEIAEGKLDWRNVLRNFWNDFSAA
                     VEQTKGLKISDVIDALDADLGPHFFPVRADGSDPRLCTACGTGRLGLKLGRFGSFIGC
                     SNYPTCQYTRKLAVDGGSEQEDSLKDGMRVLGQHPDTGEDITLRRGPYGLYVQQGEPD
                     PNDKKAKPKRASLPRGMDGETLPLEDALGLLALPRLVGLHPETGQKIEANIGRFGPYV
                     KMGALFASMDRDDSVLHLGLNRAMELIAKKQDSVKSIGVHPKDGAEVLVRKGRFGPYA
                     QWGNVVANLPRGREMTEVTLDEAVALLAEKGKTLAPKGKKGATAKKNGAKAKAAPAKK
                     AEPKAKPAPKVKTAAKSAAKSKAKTAAKPKAKTTAKTKATAKV"
     gene            3251..>3523
                     /locus_tag="VEQ16_12305"
     CDS             3251..>3523
                     /locus_tag="VEQ16_12305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64669.1"
                     /translation="MKIPPFLLCLFPLAGLTSCASIVNGTTEPVTVSTTNDVGAPLDS
                     AQCDLSNKRGDWSVTTPQTVIVHRSFSALQVKCTKSGYEEADQKVKS"
BASE COUNT          726 a         1156 c         1063 g          578 t
ORIGIN      
        1 ttttcgccgt gcccggcggc ccgctcgacc cgcgcgccag aggcggcaat gagctgatcc
       61 gccagggcgc gcacctcacc gagagtgccg ccgacgtgct caccgccctg cccgcccaga
      121 tcggcccccg gcagcgccgc ctgcccggtt tccggcagga cacccccgtc tggaacgggc
      181 cccaggacga ccaagccgcc ctcgcccagg cccgcgccgc cgtgcccgcc ctgctaggcc
      241 cggaagggat ggatgttgac gagttggcgc ggcgctgcca gttgtcgatg gctgccatgc
      301 aggcggttat cctggagctg gagcttggcg gcatggttga aagcctgcct ggcggcaggg
      361 taacgcctcc gcaggactat tgagaccagc ttcaagacca atgaatggaa cggctccttg
      421 actgatatcg tcgtcgtcga atcaccctcc aaagctaaga cgatcaacaa atatctcggt
      481 gattccttca gggtgctggc ctccttcggc catgtgcggg atctgccggc gaaagacggc
      541 tccgtccgcc cggacgagga tttcgccatg gattgggagg cggatgaccg cggcgccaag
      601 cagctggccg agatcgccaa ggccctgaaa ggcgccaaaa ccctctatct ggcgaccgac
      661 cccgaccgcg agggcgaggc gatttcctgg catgtgcaga gcgtgctggc ggaaaaacag
      721 gcccttaaag gggttaaagt cgagcgcgtc acattcaacg agattaccaa aagcgcggtg
      781 aaggccgcca tggcgcatcc gcgcgccttg gatatgcccc tcatcgaggc ctatctcgcc
      841 cgccgcgcct tggactatct ggtcggcttc accctctcgc cggtgctgtg gcgcaagctg
      901 ccgggctccc gctccgccgg gcgcgtgcag tccgtggcgc tgcgcctggt gtgcgagcgc
      961 gaagccgaga tcgaaatttt ccgcccccgc gaatattggc tggtggaagc caccatgctc
     1021 acccccacgg gcgcccccta cccggctcgg ctaacccatt accagggcaa gaaactcgac
     1081 cagttcgacc tcaatgacgc ggccaaagcc gaagccgcgc gcgccgccgt gctggccgga
     1141 catttcaagg tcgccggcgt cgagaaaaag cgcaccaagc gcaacccgcc cgcgcctttc
     1201 atcacctcca cgctacagca ggaagccagc cgcaagctcg gcctctcctc gcaggtgacg
     1261 atgcgcctcg cccagcagct gtacgagggc gtggacatca atggcgatac ggtgggcctg
     1321 atcacctata tgcgtaccga cggcgtgcag ctcgccaagg aggccgtgga gtccatgcgc
     1381 ggccgcatcc gcagcgaatt cggcggcgat tacctccccg ccgctccgcg cgagtaccag
     1441 agcaaggcca agaacgcgca ggaagcgcac gaggccatcc gcccgaccga catcaacctc
     1501 acccccgcca aagtcgcgtc gatgctctcg tccgaccagg cgcggctgta tgagctgatc
     1561 tataagcgcg ccctcgcctg ccagatggcc gccgccgagt tggaccagac agccgtgaac
     1621 ctgaccgacg gcaagggcca aacattgcgc gccactggct ccgtgctcgc cttcgatggc
     1681 ttcctgcgcc tgtatcatga ggaccaggac gatccgtccg acgatgagga tgcgcgcatt
     1741 ctgccgccca tcgcggacgg agacccagcg aaaactggta aagtggaggc cacccagcat
     1801 ttcacccagc cgccgccgcg ctattccgag gcctcgctgg tgaagaagat ggaggagctc
     1861 ggcatcggcc gcccctccac ttacgcctcc attctttctg tcctgcgtga ccgcaattat
     1921 gtgcgcatgg agaataagcg gttcgtccct gaggatcgcg gccgcctcgt caccgccttc
     1981 ctcaccagct tcttcgcgca ttatgtcgat accgggttca ccgccgggct ggaggaccag
     2041 ctcgacgaga tcgccgaagg caagctcgac tggcgcaacg tgctgcgcaa tttctggaat
     2101 gatttttccg ctgctgtcga gcagaccaaa ggtttgaaaa tctccgacgt catcgacgcg
     2161 ctcgacgccg atctcggtcc gcatttcttc cccgttcgcg ccgatggttc cgacccgcgc
     2221 ctctgcaccg cctgcggcac agggcggttg gggctgaagc ttggccgctt cggcagcttc
     2281 atcggttgct cgaattatcc aacctgccag tacacacgca aactcgcggt ggatggcggc
     2341 agcgagcagg aagacagcct caaggacggc atgcgcgtgc tcggccagca tccagacacg
     2401 ggcgaggaca tcacgctccg gcgcggcccc tacgggcttt atgtgcagca aggcgagcct
     2461 gaccccaacg acaagaaagc gaaaccaaaa cgcgcctcac tgccgcgtgg gatggatggc
     2521 gagacgctgc ccctggagga tgcgctcggg ctgctcgcct tacctcgttt ggtcgggctg
     2581 catccggaga cggggcaaaa gatcgaggcc aatattggaa gattcggacc ctacgtgaaa
     2641 atgggtgcgc tcttcgcttc catggaccgc gacgattccg ttctgcatct cggcctcaac
     2701 cgcgccatgg agctgatcgc caagaaacag gattcggtga agtcgattgg cgttcacccc
     2761 aaggacggcg cggaagtgct ggtgcgcaag ggccgcttcg gcccgtatgc gcaatggggc
     2821 aatgtggtgg cgaatctccc gcgcgggcgc gaaatgaccg aggtgacgct ggacgaggcc
     2881 gttgcgctgc tggccgagaa gggcaaaacc ctggcgccga aaggcaagaa gggcgccact
     2941 gcgaagaaga atggtgccaa ggccaaggcc gcaccggcga aaaaggcgga gcccaaggcc
     3001 aaacccgcgc caaaagtaaa aaccgcggcg aagagcgcgg caaaatcaaa ggcgaaaaca
     3061 gcagccaagc ccaaggctaa aaccactgcc aagacgaagg ccacagccaa agtctgagca
     3121 aataattttt ctgaagaaac cagacccttc tcccggaacg aaaataatcc gggagaggga
     3181 tgttcgtctt gcgcgcttcg ttacgatatg accctttcct gacgcaaaga ttaacgtcag
     3241 gatataaata atgaaaatcc ccccattcct cctgtgcctt ttccctctcg ccgggcttac
     3301 gagctgtgcc tcgatcgtca atggcaccac cgagccggtg acggtgtcca ccaccaatga
     3361 tgtcggcgcg ccgctggact ccgcgcaatg cgatctcagc aacaaaaggg gggactggag
     3421 cgtgacgacg ccgcaaacgg tgatcgtgca tcgttccttc tcggcgttgc aggtgaaatg
     3481 caccaagagc ggctatgaag aggccgatca gaaggtcaaa tcc
//
LOCUS       DASQCV010000783         5110 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2155792, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000783 DASQCV010000000
VERSION     DASQCV010000783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 5110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5110
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2155792"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..542
                     /locus_tag="VEQ16_12310"
     CDS             <1..542
                     /locus_tag="VEQ16_12310"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HYP64670.1"
                     /translation="EHAAGGGMSVVLYDLRAIDEFYAMRESLEGTAAALAAKNADETE
                     IRILSATLDAMRALPHDARAHARENQVFHEQIYRAARNRFLLKSLQSLLNFVPLLGPT
                     TYNAPGRIEHALEEHVAIVDAIRARDPARAEDAIRQHIRHSHESRILVVSDSVRNAVQ
                     RRSERPQGVGLSKARGSAP"
     gene            complement(647..2113)
                     /locus_tag="VEQ16_12315"
     CDS             complement(647..2113)
                     /locus_tag="VEQ16_12315"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013640497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HYP64671.1"
                     /translation="MSAGAKTKVTALPGDGIGPEVMAATMKILATAGAPIEWEVAEAG
                     AEVFKKGSVTGVPRETLDSIATNGLALKSPLETPVGYGGKSANVTLRKYFELYANIRP
                     VRELPGIQTPYTGRGIDMVIVRENVEDVYAGIEHMQTTTVAQCLKLMTAPGCERIIRA
                     AYGLAQAEGRKSVTVATKANIMKLTEGMMKRMGEKVAPEFPDLKPGHIIIDNCAHQLV
                     IKPEAFDVIVTSNMNGDIISDLAAGLVGGLGIAPSSNLGDHAAMFEAVHGSAPDIAGK
                     GLANPTALLSAAIMLLRHIGAFEVAATVEQALFITLAEGKNLTGDLAPRGHGVGTDAF
                     TGQVIDNLGRFSTMPSREYKKLELKTWPELTAHMEPDTRELVGIDVFLETDLRAEELG
                     HQLEAIAADSPFTLSGISNRGVTVYPPTGGQTFLVDHFACRFMFKHPIPLLASKSEGQ
                     PEISYLVQRIGAKFTWMHIEKLQRFDGKDAFERPQGEG"
     gene            2301..2759
                     /locus_tag="VEQ16_12320"
     CDS             2301..2759
                     /locus_tag="VEQ16_12320"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HYP64672.1"
                     /translation="MTQDDALAHAAIRDTLARYNMAGDRLRVEDFCATFTEDGVLETG
                     TYTLTGRAGIRAWMSGFRPAGSLSAKPARVPRFVRHHLATCQIDLTGPDTAPDSAQVR
                     TYWMVLTDIGPDHAGLYVDRFRREDGRWLIAHRKARTEWFAPESYFAPVS"
     gene            complement(2989..3546)
                     /locus_tag="VEQ16_12325"
     CDS             complement(2989..3546)
                     /locus_tag="VEQ16_12325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64673.1"
                     /translation="MSATPSSAPWWASAVFSPLMTFVFAMLGAWFAIKFDRKKTINQE
                     LVKKRLLIYEDMAPKANDLLCYFICVGDWKALDPIKLLEHKRKLDRCVFVYGPLLSPA
                     LINKSHQFINSCFSTYQGAGKAAALRANLPFLKSQWRENWNEAWDKCFVESSESIDRK
                     DLRVAYNEFITQFALEIGVNQKAVP"
     gene            complement(3543..>5110)
                     /gene="polA"
                     /locus_tag="VEQ16_12330"
     CDS             complement(3543..>5110)
                     /gene="polA"
                     /locus_tag="VEQ16_12330"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014105596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HYP64674.1"
                     /translation="LLADVSVLKIFHDAKRGLEVLRRAGFAAAAPLDDVMLMSYAQDA
                     GNFAHDAATLARLHLSHTALDVESVTGSGRSRVGFADAPLAKAVAYAGEAADISLRLW
                     AYLKPALRVHKSLALYELLEKPLISVLAEMEEYGVMVDRANLSAMSVEFERRMGEIEK
                     EIHRLAGQEFNVGSPKQLGEILFESLKLPGGKKGKTGAWGTDSSILEELAEQGAEIAQ
                     KVMDWRQLSKLKSTYADALVGQIDDRTGRVHTSFQMAVAATGRLSSTDPNLQNIPIRT
                     AEGLRIREAFIAAPGCSLVSADYSQIELRLLAHMADIPALKESFAKGEDIHARTASEV
                     FGVPMAQMDGATRRRAKAINFGIIYGISAFGLGRQLGIPAGEARAYIAAYFERYPEIR
                     AFMEKMKEEARINGFVTTPFGRRIWVPRIKDKIPALRAYAERQAINAPLQGGGADIIK
                     RAMILLPKALREAGLRTRLILQVHDELLFEAPDAELERVAKLAREVMQGAAVLNVPLV
                     VETGVGKNWGAAH"
BASE COUNT         1005 a         1838 c         1324 g          943 t
ORIGIN      
        1 tggaacacgc agccggcggc ggcatgtcgg tggtgctcta cgacctccgc gccatcgacg
       61 aattctacgc catgcgtgaa agcctggaag gcaccgcagc cgccctcgcc gccaaaaacg
      121 ccgacgaaac ggaaatccgc atcctctccg ccacgctgga cgccatgcgc gccttgccgc
      181 acgatgcccg cgcccatgcc cgcgaaaacc aggtgttcca cgagcagatc taccgcgccg
      241 cccgcaaccg cttcctgctg aaaagcctgc aatcgcttct aaacttcgtg cccctgcttg
      301 gccccaccac ctacaacgcc cccggccgca ttgagcacgc cctcgaagag cacgtcgcca
      361 tcgtcgacgc catccgcgcc cgcgaccccg cccgcgccga agacgccatc cgccagcaca
      421 tccgccactc ccacgaaagc cgcatcctcg tcgtctccga cagcgtccgc aacgccgtgc
      481 agagacgttc cgagcggcct caaggcgttg gtttaagtaa ggcaaggggc tccgcccctt
      541 gaccccgctg gggccgtcgc gccggaggcg cgcctatcat tgaatcggcg gcccttcggg
      601 cctcaggccc agtgggggtc gagggggcga agccccccgc cttcctttaa ccctcgccct
      661 gcggccgctc gaacgcgtcc ttgccgtcga agcgttgcag tttctcgatg tgcatccagg
      721 tgaatttcgc gccgatgcgc tgcaccaggt aggaaatttc cggctgccct tcggacttgc
      781 tggccagcag cggaatcggg tgcttgaaca tgaagcggca agcgaaatga tcgacgagga
      841 aggtctgccc gcccgtcggc ggataaaccg tcacgccgcg gttggagatg cccgacagcg
      901 tgaacgggct gtccgcggcg atggcttcca gctggtgccc cagctcctcg gcgcgcaaat
      961 ccgtttccag gaacacgtcg atcccgacca gttcgcgcgt atccggctcc atatgcgccg
     1021 tcagttccgg ccaggttttt agctccagct ttttatattc gcgcgagggc atggtggaga
     1081 agcgcccgag attatcgatc acctgcccgg tgaacgcatc ggtccccacg ccatgcccgc
     1141 gcggtgccag gtcgccggtg aggttcttgc cctcggccag cgtaatgaac agcgcctgct
     1201 ccacggtcgc ggccacctcg aaggcgccga tatggcgcag cagcatgatg gcggcggaga
     1261 gcagcgcggt ggggttggcc agccccttgc cggcaatatc cggtgccgag ccatgcaccg
     1321 cctcgaacat cgccgcatgg tcgcccaggt tggaggaagg cgcgataccc aaaccgccaa
     1381 ccaggccagc ggcgaggtcg gatatgatat cgccattcat gttggaggtc acgatcacat
     1441 cgaacgcttc cggcttgata acaagctggt gcgcgcaatt atcgatgatg atgtgccccg
     1501 gcttgaggtc cgggaattcc ggcgccacct tctcacccat gcgcttcatc atgccttcgg
     1561 tcagcttcat gatgttcgcc ttggtcgcca cggtcacgct cttgcgccct tccgcctgcg
     1621 ccagcccata ggcggcgcgg atgatgcgct cgcaccccgg cgccgtcatc agcttcaaac
     1681 attgggccac cgtggtggtc tgcatatgct cgatgccggc atacacgtcc tccacattct
     1741 cgcgcacgat caccatgtcg atcccgcgcc cggtataagg cgtctggatg cccggcagct
     1801 cgcgcaccgg gcggatattc gcgtaaagct cgaaatattt gcgcagcgtc acgttggccg
     1861 acttgccgcc atagcccacc ggcgtctcca gcggactttt cagcgccagc ccattggtgg
     1921 cgatgctgtc cagcgtctcg cgcggcacgc ctgtcacgga gcccttcttg aacacctccg
     1981 ccccggcctc ggccacctcc cactcgatgg gcgccccggc ggtggcgagg atcttcatgg
     2041 tggcggccat cacttccggg ccaatcccat cccccggcaa agctgtgacc ttggttttgg
     2101 ctccggcgct catcctgtgc atcctgtggc tgtgagaggg tagcccgact ataacaagac
     2161 agcccgtggc cgcctatacg cgccccccag accggccatg tgcgcgggcc tattgccatg
     2221 aaaatgactc acaccgggtt aacgccttgt cccgctttgg cacatggccc taccgtggcg
     2281 tcataaagga gggagcaaaa atgacccaag acgacgccct ggcccacgcc gccatccgtg
     2341 acacgctggc ccgctacaac atggccggag accggctgcg cgtggaggat ttctgcgcca
     2401 ccttcacgga agacggcgtg ctggaaaccg gcacttacac cctcaccggc cgcgccggca
     2461 tccgcgcttg gatgagcggc ttccgccccg ccggcagcct ctccgccaag cccgcccgag
     2521 tgccccgctt cgtccgccac cacctcgcca cctgccagat cgacctcacc ggccccgaca
     2581 ccgcccccga cagcgcacag gtacgcacct actggatggt cctcaccgac atcggccccg
     2641 accatgccgg cctctacgtg gatcgtttcc gccgcgagga cggacgctgg ctcatcgccc
     2701 accgcaaggc ccgcaccgaa tggtttgccc ccgaaagcta ttttgccccg gtatcgtaac
     2761 gccgccattg cgcgcgcagc ccgtctttgg gaggcaaggg cagggggcgc gaaccccgcc
     2821 ccacccgcgc gcagcctcgc accgtgctca ggcgcgtcaa ggacgcttcg cgccgctacg
     2881 cggtaaatcc ttgacccgcc ctccgcccgg cgcgattctg cacccggccg ggacggggaa
     2941 acggccgtta ttcagccgaa ctgggaaact aagatcgaat ggagataact aaggaacggc
     3001 tttttgattt acgccgattt cgagcgcaaa ctgagtaata aattcattat acgccactcg
     3061 cagatctttg cgatcaatag actcggagct ttcgacaaaa catttgtccc acgcttcatt
     3121 ccaattttcg cgccactgag atttgagaaa cggaagattg gctcttagcg cagcagcttt
     3181 tcctgcacct tggtacgtag aaaagcacga atttataaat tggtgtgatt tattgatgag
     3241 cgcaggagaa aggagcgggc cgtacacaaa aacacaacga tccaactttc gcttgtgctc
     3301 taagagtttt attggatcga gagctttcca atcaccaaca catataaagt agcacaaaag
     3361 gtcattggct tttggtgcca tatcctcata gatgagaagc cgtttcttga cgagttcttg
     3421 attgatggtt tttttgcggt caaatttgat cgcgaaccat gcgccaagca tcgcaaaaac
     3481 aaatgtcata agaggtgaaa agaccgcact cgcccaccaa ggagctgagc taggtgttgc
     3541 gctcaatgcg ccgcccccca attcttccca acccccgtct ccaccaccag cggcacgttc
     3601 aacacagccg ccccctgcat cacctcgcgc gccagctttg ccacccgctc cagctccgca
     3661 tccggcgcct caaacaacaa ctcatcatgc acctgcaaaa tcagccgcgt ccttaacccc
     3721 gcctcccgca acgccttcgg cagcaaaatc atcgccctct taatgatatc cgccccgccc
     3781 ccctgcagcg gcgcgttgat cgcctgccgt tccgcatagg cccgcagcgc cggaatcttg
     3841 tccttgatcc gcggcaccca gatccgccgc ccgaacggcg tcgtcacgaa tccgtttatc
     3901 cgtgcctctt ccttcatctt ttccatgaag gcgcggattt ccggatagcg ctcaaagtaa
     3961 gccgcgatat aagcccgcgc ctcacccgcc ggtatcccta gctgccgccc gagcccgaat
     4021 gccgaaatcc cgtatataat cccgaaatta atcgccttcg cccgccgccg cgtcgcgcca
     4081 tccatctgcg ccatcggcac tccgaacact tcggacgccg tgcgcgcatg aatatcctcg
     4141 cccttggcaa aactctcctt cagcgccgga atatccgcca tatgcgccag cagccgcaat
     4201 tcgatctgcg aataatccgc cgataccagg ctgcatcccg gcgccgcgat aaacgcctcg
     4261 cgaatcctta agccctccgc cgttcttata ggaatattct gcaaattcgg gtcggtggaa
     4321 gaaagccgcc ccgtcgccgc caccgccatc tggaagctcg tatgcacccg cccggtgcgg
     4381 tcatcgatct gccccaccag cgcatccgca taggtgctct tcagcttgga aagctgccgc
     4441 caatccatca ccttctgcgc aatctccgcg ccctgctcag ccagctcctc caaaatggaa
     4501 gaatccgtcc cccaagcccc cgtcttgccc tttttcccgc ccggcagctt caaactctca
     4561 aacagaatct cacccagctg cttcgggctg ccgacattga attcctgccc ggcaagacga
     4621 tggatctcct tctcgatctc ccccatccgc ctttcgaact caaccgacat ggcggacagg
     4681 ttcgctctgt ccaccatcac cccatattcc tccatctccg ccagcacgga aatcaggggc
     4741 ttttccagaa gctcatacaa agccagcgat ttatgcaccc gcagcgccgg cttcagataa
     4801 gcccagagcc gcaacgaaat atccgccgcc tcaccagcat aagccacagc cttcgccagc
     4861 ggcgcatcgg cgaaccccac ccggctccgc ccgctgcccg taacgctctc cacatccagc
     4921 gccgtatgac tcagatgcag ccgcgccaaa gtcgccgcgt catgcgcgaa attccccgca
     4981 tcctgcgcgt aagacatcag catcacgtca tccaaaggtg ccgccgccgc aaacccggca
     5041 cgccgcaaaa cctccagccc gcgcttggca tcatggaaaa tcttcagcac cgacacatcg
     5101 gccagcagcg
//
LOCUS       DASQCV010000784         2128 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_327970, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000784 DASQCV010000000
VERSION     DASQCV010000784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327970"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /locus_tag="VEQ16_12335"
     CDS             complement(<1..455)
                     /locus_tag="VEQ16_12335"
                     /inference="COORDINATES: protein motif:HMM:NF022892.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2950 family protein"
                     /protein_id="HYP64675.1"
                     /translation="MKHSWNFLGTPPSFFSALRLLAATILVLGFGLGFDPSVSRAQSA
                     NEKTFASPGEAAFAFYNAAKAGDSAALNAMLGSNADKILHTGDNVADKNAVSDFIRNY
                     DQMHRVVIEPDQTATLYVGADNWPLPVSLVKNSGGRWYFDTPSGIKEIL"
     gene            complement(512..>2128)
                     /locus_tag="VEQ16_12340"
     CDS             complement(512..>2128)
                     /locus_tag="VEQ16_12340"
                     /inference="COORDINATES: protein motif:HMM:NF023165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HYP64676.1"
                     /translation="CVSLVFSTMGLDGCKKEAASGASAPVATYAAPTPDQLYQLVAPI
                     ALFPDNLLAQVLAASTFPDQVTAAWNYLQQNQGLKGPQLMQSVDGQSWDNSVKGLTQF
                     PDVLQQMSDNLSWTSSLGDAYFNSPQNVMNAVQVMRQRAYQAGNLKNTPQQNVAVQNQ
                     APSSAPVQSSAEVQQVASEGGQITVVQAPPQTIVIQPSQPDVVYVPQYNPTVVYGAPV
                     APYPGYSTAAMVTTGLISFGVGMMVGAAMSGGCCGWGYNSWGCGWNNSSVTYNKNTYI
                     STSNTFTNRSNYNRNNANYGGGNRPSQLPNRAGGAGGLGGVGGAGGLGGVGGAGGVGG
                     RGGVGGVGGAGGVGGRGGMGGVGGAGGVGGRGGVGGAGGNRGGDFGSSPKFDQNRNQA
                     GFRDQGRGNQSVGNQGRGDQGGNRGNAGGGAARPSQQPTFGGRNQAAGGNQAGGRNQA
                     AAQPRASANDRQPVRGYGDGGNRGGNNGLGNYSQGGNARANSSRGQQSLNNGGSNRGG
                     NDAAARSGNGGANRGGGRSGGSSNRGGGRR"
BASE COUNT          332 a          694 c          691 g          411 t
ORIGIN      
        1 tagagaatct ccttgatgcc gctgggggta tcgaaatacc accggccgcc gctgttcttc
       61 accaggctga cgggcaacgg ccagttgtcg gcgcccacat agagggtagc ggtctggtcc
      121 ggctcgatga cgacacgatg catctggtcg tagttgcgga tgaagtccga gactgcgttt
      181 ttatcggcta cattgtcgcc ggtatgcaga atcttatcgg cgttggagcc aagcatcgcg
      241 ttcagagcgg ctgagtcccc tgcttttgcg gcgttgtaga aagcgaacgc cgcttcgccg
      301 ggagaggcga atgtcttctc gttcgcggac tgcgcacgcg agacggatgg atcgaagcct
      361 aagccgaagc ccaagaccag gattgtcgcc gcgagtaacc gcagcgcgga gaagaagctg
      421 ggcggcgttc cgagaaaatt ccacgagtgt ttcacttgga tgcctcctga gtgagagctg
      481 cggatctggt agatggtgag acgggtatgc gtcaacggcg tccaccacct cgattggagc
      541 tgccgccact gcggccgccg cctcggttgg ctccgccgtt accgctgcgg gctgcggcat
      601 cgtttccgcc gcgattgctg ccgccgttat tcaggctctg ctggccgcgg gagctgttgg
      661 cgcgcgcgtt gccgccttgg ctgtagttgc caagcccatt gtttccgccg cgattgccgc
      721 cgtctccgta accacgtacg ggctggcggt cgttcgcgct ggcgcggggc tgggccgccg
      781 cctggtttct gccgccggcc tggtttccgc cggctgcctg gtttctgccg ccgaaggtcg
      841 gctgctgcga tggacgcgct gcgccgccgc cggcattgcc gcggttgcca ccctgatcgc
      901 cgcggccctg gttcccaaca ctctgattgc cgcggccctg atcgcggaac ccggcctggt
      961 tacggttctg gtcaaacttc gggctgctgc cgaaatcgcc gccgcgattc ccgcctgcgc
     1021 cgcccacccc gccgcggcca ccgactccgc ctgcgccgcc aactccgccc atcccgccgc
     1081 ggccaccgac tccgcccgcg ccgccaactc cgcccacccc gccgcggcca ccgacgccgc
     1141 ccgcaccacc aacaccaccg aggccgcccg caccaccaac accgccgagg ccgcctgcgc
     1201 cgcctgcccg gttgggaagc tgagagggcc ggttgccgcc accgtagttg gcattgttcc
     1261 ggttgtagtt actgcggttc gtgaaggtgt tggaagtcga aatgtaggta tttttgttgt
     1321 aggttacgct ggagttgttc cacccgcagc cccaggagtt gtagccccac ccgcagcagc
     1381 cgccgctcat ggccgcgcct accatcatgc cgactccaaa tgagatgagg ccggtggtca
     1441 ccatggcggc ggttgagtac ccgggatagg gagcgaccgg cgcgccgtag acgacggtcg
     1501 ggttgtattg cggcacgtac accacgtcag gctgcgaagg ctggatcacg atggtctggg
     1561 gaggagcctg gaccacggtg atttggcctc cttccgatgc cacctgctgc acctcggcag
     1621 aggattgcac cggcgcggag gagggagcct ggttctggac cgccacgttc tgctgcgggg
     1681 tgttcttcag attccccgcc tggtacgcgc gctggcgcat cacctgcacg gcgttcatca
     1741 cgttctgtgg cgagttgaaa taggcgtcgc ccagggatga ggtccacgag aggttgtcgg
     1801 acatctgctg caagacgtca gggaactggg tcagcccctt gacgctgtta tcccagcttt
     1861 gcccgtcgac ggactgcatg agctgcggcc ccttgaggcc ctggttctgc tgcaggtagt
     1921 tccaggcggc tgtcacttgg tcaggaaatg tggaagccgc gagcacctgc gccagcagat
     1981 tgtcagggaa gagagcgatg ggggctacaa gctggtagag ctgatccggc gttggcgccg
     2041 cgtatgtagc taccggcgcg ctcgcgccgg acgctgcctc cttcttgcag ccgtccagcc
     2101 ccatcgtgct aaacacgaga gaaacgca
//
LOCUS       DASQCV010000785         2747 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2321096, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000785 DASQCV010000000
VERSION     DASQCV010000785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2321096"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..240)
                     /locus_tag="VEQ16_12345"
     CDS             complement(<1..240)
                     /locus_tag="VEQ16_12345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64677.1"
                     /translation="MDDFAAMPPWSQGLTGVVLNKGPAPMGRDFWAELKASADATPAL
                     KTLFAEGQDRFSPFSARFGDMLLDFSRTSLTAASLA"
     gene            complement(260..2074)
                     /gene="uvrC"
                     /locus_tag="VEQ16_12350"
     CDS             complement(260..2074)
                     /gene="uvrC"
                     /locus_tag="VEQ16_12350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008494906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HYP64678.1"
                     /translation="MPGNPGVYRMLDAKGDALYVGKARNLKKRVTSYTQLPRLPERLR
                     RMVAATASMEVVTTHTEAEALLLEANLIKRLKPRYNILLRDDKSYPWLMLTSDHPYPQ
                     LAKHRGAQTRKGSYWGPFASAGAVNQSVQTLQRVFLIRTCADTVFANRTRPCLLFQIK
                     RCSAPCVGRISEADYAVLVEQAKSFLSGKSGTVQKEMASAMQEASDRLEFEQAAAIRD
                     RIKSLTFVQGSGVINPAGLAEADVIALHQAAGQACVQVFFIRGGHNNGNRSFYPVNTA
                     GDEPGAVMAAFIAQFYDDKPPPPQILLTHMPDEEELLAEALSLKAGRKVQLSVPQRGE
                     KYDVVQHAAINAREALERKLAEAAGQGKLLSAVGELFGLAETPKRIETYDNSHIMGTN
                     AYGVMVVAGPEGFIKNAYRKFGIKTVITPGDDFAMMREVMLRRFGRTLAEDPERASEN
                     WPDLVLIDGGAGQLSAAKAVMEELGLEDIPLVGIAKGPDRDAGREWFHMEGREPFQLP
                     PRDPVLYFLQRLRDEAHRFAITTHRAGRSKKLVTSELDEVPGIGAARKKALLQHFGSA
                     RAVKGAGLKDLEAVAGINRATARAVYAFFHPGVRWTED"
     gene            complement(2346..2711)
                     /gene="folB"
                     /locus_tag="VEQ16_12355"
     CDS             complement(2346..2711)
                     /gene="folB"
                     /locus_tag="VEQ16_12355"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HYP64679.1"
                     /translation="MFIRDLTLAASIGVHAHERGTAQRVRVNVELAVIDDGAQNLSRA
                     AVGADDLARVVDYEAIVNRIRAITMAGHVQLVETLAERLAETCLLDARVRRVLVRVEK
                     LDVFADAAAVGVEIERRNN"
BASE COUNT          498 a          851 c          871 g          527 t
ORIGIN      
        1 agcgagactc gcggccgtga ggctggtgcg ggagaaatcg agcagcatgt cgccgaaacg
       61 ggcggagaac gggctgaaac gatcctggcc ttcggcgaac aatgttttga gcgccggcgt
      121 ggcgtccgcg ctcgctttca gctccgccca aaaatctcga cccattggtg ccggcccttt
      181 attcaatacg acaccagtta agccttggga ccatggcggc attgcggcaa aatcatccat
      241 aggccgcgaa tttaacggct tagtcttccg tccaccgtac gccgggatga aaaaatgcat
      301 agacggcgcg ggccgtggcg cggttgatgc ccgccaccgc ctccagatcc ttgagccctg
      361 ccccttttac cgcgcgcgcc gagccgaaat gctgtaacaa agctttcttg cgcgcggcgc
      421 cgatgccggg gacctcgtcc agctccgagg tgacgagctt tttgctccgc ccggcgcggt
      481 gggtggtgat ggcgaaacga tgcgcctcgt cgcgcaggcg ctgcaggaaa tagagcaccg
      541 ggtcacgcgg gggcagctgg aagggttcgc gcccttccat atggaaccat tcgcgcccgg
      601 catcgcggtc cggccctttc gcgatgccga cgagggggat gtcctccagc cccagctcct
      661 ccatcaccgc tttcgcggcg gaaagctggc cggcgccgcc atcgatgagc acgagatctg
      721 gccagttttc cgaggcgcgc tccgggtcct cggccaaagt gcggccgaag cggcgcagca
      781 tcacctcgcg catcatggcg aaatcatcgc ccggcgtgat gacggtcttg atgccgaatt
      841 tgcggtaggc attcttgatg aaaccttccg gcccagccac gaccatcacg ccataggcat
      901 tcgtgcccat gatgtgggag ttgtcgtagg tctcgatgcg tttcggcgtc tcggccaggc
      961 cgaacagctc gccgacggcg gataaaagtt tgccctggcc ggcggcctcg gcgagcttgc
     1021 gctccagcgc ctcgcgcgca ttgatggcgg cgtgctgcac cacgtcgtat ttctcgcccc
     1081 gctgcggcac ggagagctgc accttccgcc cggccttcag cgaaagcgcc tcggccagca
     1141 actcctcctc gtctggcata tgggtgagca aaatctgcgg cgggggcggc ttgtcgtcgt
     1201 agaactgggc gatgaaggcg gccatcaccg cgcccggctc gtcgccggcc gtgttgacgg
     1261 gataaaaact gcgattgccg ttattatgcc cgccgcggat gaagaagacc tgcacgcagg
     1321 cctggccggc cgcctggtgc aaggcgatga catcggcctc cgccagtccg gccgggttga
     1381 tgacaccgct gccctgcacg aaggtgaggc tcttgatgcg gtcgcggatc gccgccgcct
     1441 gctcgaattc gagcctatca gaggcctcct gcatggcgga agccatctct ttctgtaccg
     1501 taccggattt ccccgagaga aacgatttgg cctgctcgac caaaacggcg taatccgcct
     1561 cggaaatgcg tccgacgcat ggcgcgctgc aacgcttgat ttgaaacagc aggcaagggc
     1621 gcgtgcggtt ggcaaaaacc gtgtccgcgc acgtccgaat caggaaaaca cgctgcaagg
     1681 tctgcacgct ctggttgact gccccggccg aggcgaaggg gccccaatag ctgcccttgc
     1741 gggtctgcgc gccgcgatgc ttggcgagct gcgggtaagg gtggtccgaa gtgagcatga
     1801 gccaggggta ggatttgtca tctctgagca gaatattgta acgcggcttc aacctcttga
     1861 tgaggttggc ttccagcagc agcgcctcgg cctcggtatg ggtggtgacg acctccatcg
     1921 aagcggttgc ggccaccatc cggcgcagcc gctcgggcag gcgggggagc tgggtatagc
     1981 tcgtgacgcg ttttttgagg ttgcgggcct tgccgacata gagcgcatcg cccttggcat
     2041 cgagcatgcg gtacacgcca gggttgcccg gcatggtgac caaggcggcc tctatgacat
     2101 gcacaccgct gctttctgga ttatccacct tcttctccta ggcctgtgga taaaactgtg
     2161 gaactctgga taagtgtaag ctgggagcta aaagccgcgc agatgtggat attccgcacc
     2221 cgtcgcgcag gctttccggc taatgcattg attttagtgc aaaatattgt tgcaatgctg
     2281 tcatgcaatt acggtaacct tctcgtgaaa ccctttgact ctgcatgaat ccggagggtg
     2341 gacaactagt tgttccggcg ttcgatttcc acacccaccg cggccgcatc ggcgaacacg
     2401 tcaagtttct ccacacgcac caaaacgcgc cgcacacggg catcgaggag gcaggtttcg
     2461 gccaggcgct cggccagggt ttccaccagc tgcacatggc ccgccatggt gatggcgcgg
     2521 atgcggttca cgatggcctc gtaatccacc acccgcgcca gatcgtccgc gccgacggca
     2581 gcgcgggaga ggttctgcgc cccgtcatcg atgacggcga gctcgacatt gacgcgcacg
     2641 cgctgcgccg tgccgcgctc atgcgcatgc acgccgatgg acgccgcgag cgtgaggtcg
     2701 cggatgaaca tgcggcgggt ggcttgggtg atgtcagcat aggcctt
//
LOCUS       DASQCV010000786         3564 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2818517, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000786 DASQCV010000000
VERSION     DASQCV010000786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3564
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2818517"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1443)
                     /locus_tag="VEQ16_12360"
     CDS             complement(<1..1443)
                     /locus_tag="VEQ16_12360"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007424662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HYP64680.1"
                     /translation="MTRFVFITGGVVSSLGKGIASAALGALLQARGYSVRLRKLDPYL
                     NVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFTGVSATKADNATTGKIYSDVIAKE
                     RRGDYLGATVQVIPHITDAIKEVVLRQTEGLDFVLVEIGGTVGDIESLPFLEAIRQLG
                     NELTPARAMFLHLTLVPYIQSAGELKTKPTQHSVKELQNVGIQPHMLICRCDREIPEN
                     ERRKIASFCNVRTEAVIPALDIDTIYAVPISYHEAGMDREVLRHFGLPFEAEPDLSHW
                     QRIVDTVRSPEGTVRIAVVGKYTNLLDSYKSLSEALAHGGIANGVKVQLDWVDSEIFE
                     QPNAVEQLDGVHGILVPGGFGERGTLGKIEAVRFARERQVPFLGICFGMQMAVIECAR
                     NLAGMPSASTTEFGPCDIPIVGLLTEWARGNEIERRAAGGNLGGTMRLGAFPASLAEG
                     SLVRDVYAGEAQIQERHRHRYEVNIHYRAQL"
     gene            complement(1498..1932)
                     /gene="secG"
                     /locus_tag="VEQ16_12365"
     CDS             complement(1498..1932)
                     /gene="secG"
                     /locus_tag="VEQ16_12365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015074106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HYP64681.1"
                     /translation="MIKVLLVLHVFVTIALIGVVLIQRSEGGGLGLGGGQGMGSFMTG
                     RGTANLLTRTTAILGTAFFALSLTLAMLYKGSGQNNNAAILNTPASQSAPAAPAVPVP
                     AAPVSPQSLPQTPADAFPATAPSNQPPASSNPATPAVPGPGQ"
     gene            complement(1987..2718)
                     /gene="tpiA"
                     /locus_tag="VEQ16_12370"
     CDS             complement(1987..2718)
                     /gene="tpiA"
                     /locus_tag="VEQ16_12370"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011942092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HYP64682.1"
                     /translation="MRQIIAGNWKMYGRLAGVAAYTEAIKAAPAHIDLLICPPFTLLN
                     SFAVALQGSAIALGAQNCHTAPEGAHTGDIAAPMLAEAGAKYVILGHSERRENHGETN
                     AEVKAKAEAAIAAGLIPIICVGETESQRDAGEAEHVVRTQLAHSLPANFAGVVAYEPV
                     WAIGTGRTPTEADVTAMHEAIRAALITQLGEGGKTINILYGGSVKPGNAASLLALPEV
                     GGALVGGASLKAEDLLAIASAAPQR"
     gene            2847..3014
                     /locus_tag="VEQ16_12375"
     CDS             2847..3014
                     /locus_tag="VEQ16_12375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64683.1"
                     /translation="MLMFLAVLSVSVVAVLLMQAMDIECAKQPRRRMGRAPKVAAKDV
                     YHDDGVAGALR"
     gene            3190..>3564
                     /locus_tag="VEQ16_12380"
     CDS             3190..>3564
                     /locus_tag="VEQ16_12380"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HYP64684.1"
                     /translation="MLVWVRKLMSNWVARIFFSLLVVGFVFWGVSNVLTLVGNDSSVA
                     RVGRTVIDISTVQAAYQAALNQAGQQGQPDLATRQQLASQALADALRKQIIKQEEQRL
                     GVTAPDAAVRQILDSDPAFQTNG"
BASE COUNT          617 a          985 c         1284 g          678 t
ORIGIN      
        1 cagctgggcg cggtaatgga tgttgacctc gtagcggtgg cggtggcgct cctggatctg
       61 tgcctcgccc gcatagacgt cgcgcaccag cgagccttcg gccaggctgg cggggaaggc
      121 gccgaggcgc atggtgccgc cgagattacc gccggcggcg cggcgctcga tctcattgcc
      181 gcgggcccat tcggtgagca ggccgacgat ggggatgtcg cacgggccga attcggtggt
      241 ggaggcggat ggcatgccgg caaggttgcg ggcgcattcg atgaccgcca tttgcatgcc
      301 gaaacagatg ccgaggaacg gcacctggcg ttcgcgggcg aaacggacgg cttcgatctt
      361 gcccagcgtg ccgcgctcgc cgaagccgcc ggggacgagg atgccgtgca cgccgtcgag
      421 ctgttcgacc gcgttgggct gctcgaagat ttccgaatcg acccagtcga gttggacttt
      481 cacgccattg gcgatgccgc catgggcgag ggcctcggag agcgacttat agctgtccag
      541 caggttggtg tatttgccga cgacggcgat gcggacggtg ccttccgggc tgcgcaccgt
      601 gtcgacgata cgctgccagt gcgagagatc gggctcggcc tcgaaaggca ggccgaaatg
      661 gcgcagcact tcgcggtcca tgccggcctc gtgataggag atgggcacgg cgtaaattgt
      721 atctatgtcc agcgctggaa tgaccgcctc ggtgcggaca ttgcagaagc tggcgatctt
      781 gcggcgctca ttttcgggaa tctcgcggtc gcagcggcag atgagcatat gcggctggat
      841 gccgacattt tgcagctcct tcaccgaatg ctgggtcggc ttggtcttca gctcgccggc
      901 ggattggatg tagggcacca gcgttaggtg caggaacatg gcgcgggcgg gggtgagctc
      961 gttgccgagc tggcggatgg cttcgaggaa gggcagcgac tcgatgtcgc ccaccgtgcc
     1021 gccgatttcg accaggacga agtcgagccc ctcggtttgg cgcagcacca cttccttgat
     1081 ggcgtcggtg atgtgcggaa tgacctggac ggtggcgccg agataatcgc cgcggcgctc
     1141 cttggcgatg acgtcggaat agattttgcc ggtggtggcg ttgtcggcct tggtggcgga
     1201 gacgccggtg aagcgctcgt aatgaccgag atcgaggtcg gtttccgcgc cgtcatcggt
     1261 cacgaacacc tcgccatgct ggtaggggct catcgtgccg gggtcgacgt tgagataggg
     1321 gtccagcttg cggaggcgga cggaatagcc gcgggcctgg agaagagcgc caagtgctgc
     1381 cgaagcgata cctttaccga gggacgagac cacgccgccg gtgatgaata caaaccgcgt
     1441 catggaatcc aaccttacac gagtcgcgaa aaaaacggga ggcttgtgag cggcggatta
     1501 ttgcccgggg cccggtacgg cgggcgtggc agggttgctg gaggcgggag gctggttcga
     1561 gggtgccgtg gccgggaagg cgtcggccgg ggtctgcggc agggattgcg gcgagaccgg
     1621 cgcggcggga acaggcacgg ctggtgcggc cggggcgctt tggctggccg gggtattaag
     1681 gatggcggcg ttattattct gaccgctgcc cttgtagagc atggccagcg tcagagacag
     1741 ggcgaagaag gcggtgccga ggatcgccgt ggtccgggtg aggaggttgg ccgtaccgcg
     1801 gccagtcatg aagctgccca tgccctggcc gccgccaagc ccgagtcccc cgccctcgct
     1861 gcgctggatc aacacgacgc cgatcagcgc gatggttacg aatacatgca ggacgaggag
     1921 aactttgatc atcgaggaac ccggttgaaa cgctgcggcg aagagccgcc aaaattaggg
     1981 ccgcttctag cgttgtggcg cggcgctagc aatggccaga aggtcctccg ccttgaggct
     2041 ggcaccgccg accagggcgc cgccgacctc gggcaaagct agcaggctgg cggcgttgcc
     2101 cggcttcacc gagccgccat agagaatgtt gatggtttta ccgccttcgc caagctgggt
     2161 gatgagggcc gcgcggatgg cttcatgcat ggcggtgaca tccgcctcgg tgggggtgcg
     2221 gccggtgccg atggcccaga ccggctcata ggccactaca ccggcaaagt tggcgggcag
     2281 gctatgggcg agctgggtgc gcacgacatg ctcggcctcg cctgcatcgc gctgggattc
     2341 ggtctcgccg acgcagatga tgggaatgag gccggcggcg atggcggctt cggccttggc
     2401 tttcacctcg gcattggtct cgccatggtt ctcgcgccgc tcggaatggc cgagaatcac
     2461 atattttgcg ccggcttcag ccagcatggg ggcggctata tcaccagtat gcgcgccctc
     2521 gggagcggtg tggcagttct gcgcgccgag ggcgatggcc gagccctgca gggcgacggc
     2581 gaagctgttg agcagggtga agggcgggca aatcagcaga tcgatatggg ccggggcggc
     2641 cttgatggcc tcggtatagg cggcaacccc tgccagccgg ccatacatct tccaattacc
     2701 tgcaatgatt tgccgcattg tgttgaactc ccgctataaa ctgcatgttg atgatcaaaa
     2761 gcgttctgct gctatgcagc atatttgctg gactttaaat gatgcgatgc aacataatga
     2821 agccaagcct gaaggagggt tttgttatgt tgatgtttct tgccgtcttg agcgtgtccg
     2881 tcgtggcggt gctgcttatg caggcgatgg acattgagtg cgccaagcag ccccggcgcc
     2941 gcatgggccg ggcgccaaag gttgccgcca aggacgtata tcacgacgat ggcgtggccg
     3001 gcgcgctgcg ctaagcggta ctgtttgcgt ttgtaagccg gggctgaagg gccctggcgg
     3061 ggtgccgcgg ggcgtggaaa tttgcttgtc cggtccgagc ggcgtgctca atgtctctcc
     3121 ggcctccagt tatttgcccg atactggccg cctagctata gaggcggcga tcttgggtaa
     3181 agagagccga tgctggtctg ggtccggaaa ttaatgagta attgggtggc gagaattttt
     3241 ttctcgctgc tcgtcgtggg gttcgtgttc tggggcgtct cgaacgtcct gacgctggtg
     3301 ggcaacgact cgtcagtggc gcgggtcggc agaaccgtga tcgatatttc cactgtgcag
     3361 gcggcctatc aggctgcgct caatcaggct ggtcagcagg gccagccgga tctggcaacg
     3421 cgccagcaat tggccagcca ggctttggcc gacgcgctgc gcaagcagat catcaagcag
     3481 gaagagcaga ggctgggcgt gacggcgccg gatgcggcgg tgcgccagat actggattca
     3541 gatccggcct tccagaccaa tggc
//
LOCUS       DASQCV010000787         3591 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_2983701, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000787 DASQCV010000000
VERSION     DASQCV010000787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 3591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3591
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2983701"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..1343
                     /gene="der"
                     /locus_tag="VEQ16_12385"
     CDS             3..1343
                     /gene="der"
                     /locus_tag="VEQ16_12385"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007423287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HYP64685.1"
                     /translation="MQPRIAIAGRPNVGKSTLFNRLIGQRLALVADTPGVTRDRKEAE
                     CEIGGRKVLMVDTAGLEEAPPDTLPGRMRASTSSAVEQADLVLFVFDAKSGLLPEDRH
                     FATWLRRTGKPVLVVANKAEGRGGAAAAMEAYELGLGEPCAISAEHNEGIYDLMSEIA
                     ARLPPLPEGEEEEDENLPLHLAIVGRPNAGKSTLLNYLLGEQRMITGPEPGLTRDAVS
                     VDFTGPDNKLYRVVDTAGLRKRAKVDAGLEKMSTSSSIEALKRAEMAVLAVDAVQGVQ
                     EQDLHIARLIEREGRACVIALTKWDAVEDRGEARKAALDRISISLSQMKGITIVPLSA
                     ETGEGMAKLFPAIRATYEKWNMRVPTSQLNRWFEAALERFPPPLVDGRRLKLRYITQI
                     KARPPTFALFGTRAEQTPETYQRYLVNSFRENFDMPGIPIRIYLRGTDNPYQDD"
     gene            complement(1356..2753)
                     /locus_tag="VEQ16_12390"
     CDS             complement(1356..2753)
                     /locus_tag="VEQ16_12390"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HYP64686.1"
                     /translation="MRYLSALALLAAFAAPAAQAQTAANLNALRGLVPFSTLLNSSEG
                     KAALEENGKTTTAIQTGTSHQPSLEPAPFPREQSIRDAFITFANATQLADGLGTTLGA
                     AYQKRATYSEGKDKPGFTSVSPNVALLLAYSIVVAESDSNSAKYFFANGTQKSSKNPP
                     QPASAAALEILKNAGGTTDVFGKFFGLPAGGKGADRLGDSRPFQTAKYFATFAGKDYF
                     GHYTSNAEWLRGPGPDSQSKGANLQDNPAFPSGHATYAYTGGVLLAIMVPQRYPQEIT
                     RAAEFGNGRIILGAHYAMDVIAGRTLALYDVAQLLSNNPDYVGQKEGKSPSITDYKAA
                     LTAARADLVKALESGTGTTIAEAATKDTSRFAHPATNEAFYESTQTYGLPVVFPAQAG
                     KTEDVGKLAPEAGLLLTAAFPYLTLEQADDILTKTEGPGGGFLDNGSSFGLYSRLDLY
                     KASLQAEALAPKSGD"
     gene            complement(2830..>3591)
                     /locus_tag="VEQ16_12395"
     CDS             complement(2830..>3591)
                     /locus_tag="VEQ16_12395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008492021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HYP64687.1"
                     /translation="LDIVTLDQGRSRLDPSISLADTLTGGKSDQVVVGGQSRHVIGYM
                     KDFLFKPEQARTPVGTLSGGERGRLLLAMALAKPSNLLVLDEPTNDLDLETLDLLQEM
                     LGDYPGTVITVSHDRDFLDRIASSTLAAEGQGRWVEYAGGYSDMLAQRGEAASVAKAE
                     KKPAPKPAAPAAAPKPASAKLSFKEQHELKLLTAEIDRLQGELQKQEVILTAPNLYEK
                     DPKKFAAATAAMAELHQKLEAAEERWLELEMRKEG"
BASE COUNT          626 a         1050 c         1237 g          678 t
ORIGIN      
        1 tgatgcaacc gcgcattgcc atcgccgggc ggccgaatgt cggtaagtcc accctcttca
       61 accgtctcat cggccagcgc ctcgcgctcg tcgcggatac gccgggggta acacgcgacc
      121 gcaaggaagc ggaatgcgag atcggcgggc ggaaagtcct catggtggat acggcggggc
      181 tggaagaggc accgccggat acgctgccgg ggcgcatgcg cgcctccacc tcgtcggcgg
      241 tggagcaagc ggatctcgtg ctgttcgtat tcgacgccaa aagcgggctg ctgcccgagg
      301 acaggcattt cgccacctgg ctgcgccgca ccggcaagcc tgtgctggtg gtggcgaaca
      361 aggccgaggg acgcggcggc gcggctgcgg ccatggaagc ctatgagctg ggcctgggcg
      421 agccctgcgc catttcggcc gagcataatg agggcattta cgacctcatg agcgaaatcg
      481 ccgcgcgcct gccgcctctg ccggaaggcg aagaggaaga agacgaaaac ctgccgctgc
      541 atttggccat tgtcggccgg ccgaatgccg gtaaatccac cctgctgaat tatctgctcg
      601 gcgagcagcg tatgatcacc ggccccgagc ccggcctgac gcgcgatgcc gtgtccgtcg
      661 acttcaccgg gccggataac aagctctacc gggtggtgga cacggctggc ctgcgcaagc
      721 gcgccaaggt ggatgcgggc ctggaaaaaa tgtcgacctc ctcctccatc gaagcgctga
      781 aacgggcgga aatggcagtg ctcgccgtcg atgccgtgca gggcgtgcag gagcaggatc
      841 tgcacatcgc ccggcttatc gaacgcgaag gccgtgcctg cgtcatcgcc ctgaccaaat
      901 gggacgcggt ggaagaccgc ggcgaagccc gcaaggcggc actcgaccgt atctccatct
      961 cgctctcgca gatgaagggc atcaccatcg tgcctctctc ggccgaaacc ggcgagggca
     1021 tggcgaaact ctttcccgcc attcgcgcca cctacgagaa atggaacatg cgcgtgccca
     1081 ccagccagct caaccgctgg ttcgaagccg ccctggaacg tttcccgccc ccgctcgtcg
     1141 atggccgccg gctgaaactg cgctacatca cccagatcaa ggcgaggccg ccaactttcg
     1201 ccctgttcgg cacgcgcgcc gaacaaaccc cggaaaccta ccagcgctat ctggtgaaca
     1261 gcttccgcga aaacttcgat atgcctggca tccccatccg aatctatctg cgcggcacgg
     1321 acaacccgta tcaggatgat tgaggggtta gcccatcaat ctcctgattt tggtgccaat
     1381 gcctcggcct ggagactggc tttatagagg tcgaggcggg agtagaggcc gaaagaggag
     1441 ccgttatcta ggaagccgcc gccggggcct tcggttttgg tgaggatatc gtcggcttgc
     1501 tctagggtga gataggggaa ggcggcggtg aggagcaggc cggcttcggg ggcgagtttg
     1561 ccgacatctt cggttttgcc ggcctgggcc gggaagacca cgggcagacc ataggtctgg
     1621 gtggattcgt agaaggcttc gttggtggcc gggtgggcga agcggcttgt atccttcgtc
     1681 gcggcttcgg cgatggtggt gccggtgccg gattcgaggg ctttcaccag gtcggcgcga
     1741 gcggcggtga gggcggcttt atagtcggtg atgctggggg acttgccttc cttctggccg
     1801 acataatcgg gattgttgga gagaagctga gcgacgtcat agagcgccag ggtgcggccg
     1861 gcgatgacat ccatggcgta atgcgcgccg aggatgatac ggccattgcc gaattcggcg
     1921 gcgcgggtga tttcctgcgg gtagcgttgc ggcaccatga tggcgagcag cacgccaccc
     1981 gtataggcgt aggtggcatg gccgctgggg aaggcggggt tgtcctgcag gttggcgccc
     2041 ttgctttggg agtccggacc ggggccgcgc agccattcgg cattactcgt ataatggccg
     2101 aaataatcct tgccggcaaa ggtggcgaaa tatttcgcgg tctggaaggg gcgggaatcg
     2161 ccgagcctgt ccgcgccctt cccgcctgcg ggaaggccga agaatttgcc gaacacgtcc
     2221 gtggtgccgc cggcgttctt cagaatctcc agagccgcgg cggaggcggg ctggggcgga
     2281 ttcttgcttg atttctgcgt gccgttggcg aagaaatatt tggcggaatt ggaatccgac
     2341 tcggcgacga cgatgctgta ggcaagcagc agcgcgacat tgggcgagac ggaggtgaag
     2401 ccaggcttat ccttgccctc gctataggtg gcgcgcttct ggtaggcggc gcccagcgtc
     2461 gtgccgagcc cgtccgcaag ctgggtggca ttggcgaagg tgatgaaggc gtcgcgtatc
     2521 gattgttccc gcgggaaggg cgcgggctcc aggctgggct ggtgggaggt gcccgtctgg
     2581 atggctgtgg tggttttgcc attctcctcc agcgcggcct tgccctcgct gctattgagc
     2641 agcgtgctga agggaaccag cccccgcaac gcgttgaggt tggcggcggt ctgggcctga
     2701 gcggcggggg cagcgaaggc agcgagaagg gcgagagcgg acaaatagcg catcttgggt
     2761 cctcagggct tcattcggct caagaggtgc cagccttggt tgcgggtgac aagatggcgg
     2821 cattgcgccc tacccttcct tgcgcatctc cagctctagc cagcgttcct ccgccgcttc
     2881 cagcttctgg tgcagctctg ccatggcggc ggtggcggca gcgaattttt tcggatcttt
     2941 ctcgtacaga ttgggggcgg tgaggatcac ctcctgcttc tgcaattcac cttgcaggcg
     3001 atcgatctcg gccgtgagca gtttcaattc atgttgctcc ttgaaggaga gttttgcgga
     3061 ggcgggcttg ggtgctgcgg cgggcgcggc aggtttgggg gcgggctttt tctccgcttt
     3121 tgcaacggaa gccgcttctc cccgttgcgc cagcatgtcc gaatagccgc ccgcatattc
     3181 cacccagcgc ccctgccctt ccgcggccaa agtggagctg gcgatgcggt cgaggaagtc
     3241 gcggtcgtgc gaaacggtga tgacggtgcc gggataatcg cccaacattt cctgcaacag
     3301 atcaagcgtt tccagatcga gatcgttggt gggctcgtcc agcaccagca gattgctggg
     3361 cttggccagc gccatggcga gcagcaggcg cccgcgctcg ccgcccgaga gcgtgccgac
     3421 cggggtgcgc gcctgttccg gcttgaagag gaaatccttc atatagccga tgacatggcg
     3481 ggattggccg ccgacgacca cctggtcgct cttgccaccg gtgagcgtgt cggcgagcga
     3541 gatcgatgga tcgagcctgg aacggccctg gtcgagcgtg acgatatcga g
//
LOCUS       DASQCV010000788         2829 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_828152, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000788 DASQCV010000000
VERSION     DASQCV010000788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2829
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_828152"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            63..1310
                     /gene="efeB"
                     /locus_tag="VEQ16_12400"
     CDS             63..1310
                     /gene="efeB"
                     /locus_tag="VEQ16_12400"
                     /inference="COORDINATES: protein motif:HMM:TIGR01412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0033212 - iron import into cell [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron uptake transporter
                     deferrochelatase/peroxidase subunit"
                     /protein_id="HYP64688.1"
                     /translation="MNGQKPSRRGFFGMAGGLAGGIATASAAPTAAVAYEGGGEAVPF
                     YGPRQAGITTPMQSHIYFAAFDLAAENRQELVALLQAWTMASARMSAGLPAVPGEQDG
                     DKPSLDSGEAVGLNPQRLTITFGFGPDLFTLAGKDRYGLAAKRPEALVNLPGFNGDQL
                     VEGLCGGALCVQACADDAQVAFHAVRQLARLSYGAANLRWVQSGFCTGGKSKGTARNL
                     LGFKDGTMNPTGATMDQAVWVEQPGWMQGGSYMVARRIRIALEHWDRMRVGFQEMTFG
                     RSKATGAPLGGKAEFDTPDFNATDSSGNYVIPENAHMRLAAPVNNDGAQILRRSYSYN
                     DGANFVAERWPPWHQGIEYDAGLFFQAYQKDPRTGFIRIFDKMSKFDALNQFTTHVGS
                     AIFACPPGVTKGGYIGQGLLETA"
     gene            1341..2699
                     /locus_tag="VEQ16_12405"
     CDS             1341..2699
                     /locus_tag="VEQ16_12405"
                     /inference="COORDINATES: protein motif:HMM:NF016830.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HYP64689.1"
                     /translation="MGKSNKVWMRGRLSALSLAAALGATPAFAQSDNNNGSIWQRSQL
                     LGDIGGLRTALGNAGITFGLSDSENLLANVSGGVKTGATMQGVTTMSLDMDTQKAVGL
                     PGGTFHVSALQLHGRPLSPYYLDTLQTANGNEGDNATRLWELWYDQSFAKGLFDIKIG
                     QQSIDNEFIVSQYSGLFVNTMAGWPLIPSENLYGGGPAYPLSSLGVRLRFKPNSNTAI
                     LAGVFDDNPGGGAFSDNAQALDASGAKFNLNTGALWIAELQYSASPFGLPGTYKFGGW
                     YDSGHFPDQLFGTDGLTFADPASNGNPRMHRGNYSLYGVVDQTVWQDAKDSSRNVNVF
                     GRIMGAPSVQNLVTFFFNGGVTMAAPFPGRDNDQAGIDFGIGKVSSRAADLDEASGAP
                     RRGTEELFELTYQAQVFPWLVAQPDIQYVIDPGAGALNPNDPTRKLDNELVIGARVVT
                     TF"
BASE COUNT          535 a          829 c          926 g          539 t
ORIGIN      
        1 aacccggaag ggacaggttt ttattatgtt gaggatgaca tgaacacagt ggtgcaggcg
       61 caatgaacgg acaaaaacca tcacgccggg gttttttcgg catggcgggc gggctggcgg
      121 gtggcattgc caccgccagc gcggccccta cggcggccgt ggcctatgag gggggcgggg
      181 aggcggtgcc attctacggc ccgcgccagg ccggcatcac cacgccgatg cagagccata
      241 tctatttcgc cgccttcgac ctggcggcgg aaaaccgtca ggagctggtc gccctgttgc
      301 aggcctggac catggcgtcc gcgcgtatga gcgccggtct gccggccgtg ccgggtgagc
      361 aggatggcga caagccctcg ctcgatagcg gcgaggcggt ggggcttaac ccgcagcgcc
      421 tcaccatcac ttttggtttc gggcccgacc tgttcactct ggctggcaag gaccgttacg
      481 gcctcgccgc gaaacggccc gaggcgctgg tcaatctgcc cggcttcaat ggcgaccagt
      541 tggtggaagg tttgtgcggt ggtgcgctct gcgtgcaggc ctgcgccgat gatgcgcagg
      601 tggctttcca tgcggtgcgg cagctggctc ggctgtccta cggcgcggcc aatctgcgct
      661 gggtgcagag cggtttctgc accggcggga agagcaaggg cacggcgcgc aaccttctgg
      721 gcttcaagga cggcaccatg aatcccacgg gtgccaccat ggaccaggcc gtctgggtgg
      781 agcagccggg ctggatgcag ggcggctcct atatggtggc gcggcgcatc cgtatcgcgc
      841 tggaacattg ggaccgcatg cgcgtcggtt tccaggaaat gacctttggg cgcagcaagg
      901 cgacgggcgc gccactcggc ggcaaggcgg aattcgatac accggatttc aacgccactg
      961 attccagcgg caattatgtg attcccgaaa acgcgcatat gcggctggcg gcgccggtga
     1021 ataatgacgg cgcgcagata ttgcgccgct cttattccta taatgatggc gccaatttcg
     1081 tggccgagcg ctggccgccc tggcaccagg gcatcgaata tgatgccggg ctgttcttcc
     1141 aggcctacca gaaggacccg cgcaccggct tcataagaat tttcgataaa atgtcgaaat
     1201 tcgacgcgct caaccagttc accacccatg tcggcagcgc cattttcgcc tgcccgccag
     1261 gggttacgaa aggtggctat atcggccagg gcctgctcga gaccgcctag cctagaatag
     1321 agacgcaaca ggagagtaac atgggaaaat ccaataaagt ttggatgcgg ggccgcttgt
     1381 ccgcgctctc gctggcggcg gcgctgggcg ccacgccggc cttcgcgcag agcgacaata
     1441 ataatggcag catctggcag cgctcgcagc ttctaggtga tatcggcggg ctgcgcacgg
     1501 cactcggcaa tgccggtatc accttcgggc tgagcgacag cgagaatttg ctggccaatg
     1561 tcagcggcgg cgtgaagacg ggcgccacca tgcagggcgt gaccaccatg tcgctggata
     1621 tggatacgca gaaagccgtc ggcctgccgg gcggcacctt ccatgtcagc gcactgcaac
     1681 tacatgggcg gccgctgagc ccctattatc tcgacactct gcagaccgcc aacggcaatg
     1741 aaggcgacaa tgccacgcgc ctgtgggagc tgtggtatga ccagtccttc gcgaaaggcc
     1801 tattcgatat caagatcggc cagcagagca tcgataatga attcatcgtc agccaatatt
     1861 ccgggctttt cgtcaacaca atggcaggct ggccgctgat tccctccgag aatctgtacg
     1921 gtggcggtcc ggcctatccg ctctcctcgc ttggcgtgcg gctgcgattc aagcccaaca
     1981 gcaatacggc gattctggct ggcgtgttcg acgataatcc cggcggcggc gcattttctg
     2041 acaatgccca ggcgctggat gcgtcaggcg ccaagttcaa cctgaatacc ggcgcgctgt
     2101 ggatcgcgga gttgcaatat tcggcgagcc cgttcggtct gcccggcacc tataaattcg
     2161 gcggctggta cgatagcggc catttccccg accagctttt tggcacggac gggctgacct
     2221 tcgccgaccc ggccagcaat ggcaatccac gcatgcatcg tggcaattac agcctctatg
     2281 gcgtggtgga ccagaccgtg tggcaggacg ccaaggatag ctcgcgcaat gtgaatgttt
     2341 ttggccgcat catgggcgcg ccctccgtgc agaatctcgt caccttcttc ttcaatggcg
     2401 gcgtgacgat ggcggccccc ttccctgggc gtgataatga ccaggcgggc attgatttcg
     2461 gcatcggcaa ggtgagcagc cgggcggcgg atctggacga ggcttccggc gcgccgcggc
     2521 gtggcacgga ggaattgttc gagctgacct atcaggcgca ggtcttcccc tggctggtgg
     2581 cgcagccgga catccagtat gtgatcgatc ctggcgcggg cgcgctgaac ccaaatgacc
     2641 cgacgcgcaa gctggataat gagctggtga ttggcgcgcg ggtggttacg acgttttgag
     2701 aagtcgtggg ggccttttga aaaggcccca taccactaaa acttttgcaa atttaatggt
     2761 cgttgatcgg ctgcgccggc ggggtgacct ggcggaggaa cggtgccagg agtacggcag
     2821 cggcgaaag
//
LOCUS       DASQCV010000789         2847 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Acidocella sp. isolate SMAG_U11708 k141_3150254, whole
            genome shotgun sequence.
ACCESSION   DASQCV010000789 DASQCV010000000
VERSION     DASQCV010000789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37945436
            Sequence Read Archive: SRR6516165
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Acidocella sp. (soil metagenome)
  ORGANISM  Acidocella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Acetobacterales; Acidocellaceae; Acidocella.
REFERENCE   1  (bases 1 to 2847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/09/2024 06:45:08
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,485
            CDSs (total)                      :: 2,468
            Genes (coding)                    :: 2,461
            CDSs (with protein)               :: 2,461
            Genes (RNA)                       :: 17
            tRNAs                             :: 14
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 7
            CDSs (without protein)            :: 7
            Pseudo Genes (ambiguous residues) :: 0 of 7
            Pseudo Genes (frameshifted)       :: 2 of 7
            Pseudo Genes (incomplete)         :: 4 of 7
            Pseudo Genes (internal stop)      :: 1 of 7
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2847
                     /organism="Acidocella sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3150254"
                     /isolate="SMAG_U11708"
                     /isolation_source="soil"
                     /db_xref="taxon:50710"
                     /environmental_sample
                     /geo_loc_name="Puerto Rico: Rio Grande"
                     /lat_lon="18.32 N 65.82 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VEQ16_12410"
     CDS             <1..252
                     /locus_tag="VEQ16_12410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HYP64690.1"
                     /translation="EPGQTTTSPISRSDLGQTRATCNPSAPIVPMPDSQLRYYQLLAS
                     SSKSANGAGLFAPNGAYLNLSVFFTMYLSTRFFLRAAGR"
     gene            complement(642..1088)
                     /locus_tag="VEQ16_12415"
     CDS             complement(642..1088)
                     /locus_tag="VEQ16_12415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012222930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HYP64691.1"
                     /translation="MRLTRYTDFAIRMVLYLAAHEERLCSIGEIAQAYGISQNHLMKV
                     ASDLAGTGYVHSLRGRGGGIRLARPTDEINIGQMVRHTEGKVDLVGCGECALAPACGM
                     VCAFKEATEAFFKSLEKYSLTDIMTKGKPDQLRRILAANPYPEGTL"
     gene            1193..1588
                     /locus_tag="VEQ16_12420"
     CDS             1193..1588
                     /locus_tag="VEQ16_12420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009542248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group III truncated hemoglobin"
                     /protein_id="HYP64692.1"
                     /translation="MLDEPSLTRLVTHFYARLRLDPLLGPLFNRAIADWPEHLQRLAA
                     FWSSVMLTTGRYKGQPLPAHLRHQAEIRPEMFERWLELWEQSAAQCLPPEGAAAVAAK
                     AHRIAASLRMALFPELPPVFVPATTHASR"
     gene            1681..>2847
                     /gene="hmpA"
                     /locus_tag="VEQ16_12425"
     CDS             1681..>2847
                     /gene="hmpA"
                     /locus_tag="VEQ16_12425"
                     /EC_number="1.14.12.17"
                     /inference="COORDINATES: protein motif:HMM:NF009805.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008941 - nitric oxide dioxygenase
                     activity [Evidence IEA];
                     GO_function: GO:0019825 - oxygen binding [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0051409 - response to nitrosative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NO-inducible flavohemoprotein"
                     /protein_id="HYP64693.1"
                     /translation="MLTDAQTAIIKATVPLLETGGEALTTHFYKIMLGEYAEVRPLFN
                     QAHQASGAQPRALANSVLLYAKNIDRLQELGPLAAQIVNKHVALQVQPEHYPIVGACL
                     LRAIREVLGPDIATDAVIDAWGAAYQQLADLLIGAEKGVYDALAAAPGGWRGARAFRV
                     ARKVEESAEITSFHLAPVDGQAVVDYKPGQYLGLRLVIDGQEVRRNYSLSAAANGRFY
                     RISVKRERGGLVSNFLHDKVAEGDVLDVFPPAGEFVLREGTAPLVLISGGVGITPTLA
                     MAEAALAEGGRDVTFLHYARNKEAHGFAETLAGWASRYERFRHFTIYEQGEAGEAHAF
                     GRPVLEHLQNWLPAKPDCDVYFLGPKPFMALMKTLLAKFGLADERCRYEFFGPAE"
BASE COUNT          546 a          843 c          864 g          594 t
ORIGIN      
        1 gaacccggcc aaactacaac gtcaccaata tcccgcagtg atcttggtca aacccgcgcc
       61 acttgcaacc catccgcccc aattgtgcca atgccggaca gccagctccg ttattaccag
      121 ctgttggcaa gctcctcgaa aagcgccaac ggcgccggcc tgttcgcgcc gaatggcgcc
      181 tatctcaacc tttccgtctt ttttaccatg tacctgtcca ctcggttttt ccttagggcg
      241 gcgggccggt agccggcttg cagcggagcg atgagaggcg tgggccggaa cgtcctggaa
      301 ccagcaggcg ttgcataaaa gcgagtatac ggaacggcgc cccagccaca tgagtggctc
      361 acctcttcgg cagggtgcga catacggaag catggttctg gacaagaggg aaaaatgctc
      421 gttacgcgag acgccaatcc tttttcggca acggccatgc atactggtgc cgagatgccc
      481 aaacgcaaac tgaatgaact tgtactgagc gatgcatcat gggcgcgcat tgcgccgcat
      541 atcatcggga acaagaaagg ccggcgatcc ggatttcgcg tatcggattg ttggtgatga
      601 cgctactgat acgagaatga cgccgcttta gatcaaacct gctaaagcgt tccctctgga
      661 tacgggtttg cggccaggat ccggcgcagc tgatcgggtt tgcctttggt cattatgtcg
      721 gtcaggctgt atttttccag gcttttgaag aaggcttctg tcgcctcttt gaaagcgcac
      781 accatgccgc aggcgggcgc cagggcacat tcgccgcagc cgacgagatc gacctttcct
      841 tcggtatggc gcaccatctg gccgatattg atttcgtcag tgggccgggc caggcggatg
      901 ccgccgccac ggccacgcag actatggaca tagcccgtgc cggccagatc gctcgccacc
      961 ttcatcagat gattctgcga gatgccgtag gcttgggcga tctcaccgat ggagcagagc
     1021 cgttcttcat gtgcggccag atagagcacc atccggatgg cgaagtccgt atagcgtgtc
     1081 agccgcatga gccgctccat aatatgcata tcacttgcat gttttgtcgc cgtaggttaa
     1141 acaggcatcc ataatacatg ttttagagtc gaacaccatg gctttaaccg agatgcttga
     1201 cgaaccgagc ctaaccaggc ttgtcaccca tttttatgcg cggctgcgcc tggacccgct
     1261 gttggggccg ctcttcaacc gggccattgc tgattggccc gagcatttgc agcggctggc
     1321 ggcattttgg tcttcggtga tgctgacgac cggccggtat aaggggcagc ctttgccagc
     1381 ccatctgcgg catcaggccg aaatcaggcc ggagatgttc gagcgctggc tggaattatg
     1441 ggaacagagc gcggcgcaat gcttgccgcc ggagggcgcg gcggctgtgg ccgccaaggc
     1501 ccatcgcatc gccgccagtc tgcggatggc gctgtttccg gagttgccac ccgtctttgt
     1561 cccagccacc acgcacgcca gccgctaggt cccccccttc cgcgtaccag agtccggcga
     1621 ccataaatta tggcgcctgc tcaggatgat tttgtctctt ttttcaaagg aactcttcgc
     1681 atgctcacag atgcccagac cgccatcatc aaagcgaccg tccccttgct ggaaactggc
     1741 ggcgaggcgc tgacaacgca tttctacaag atcatgcttg gcgaatacgc cgaagtgcgg
     1801 ccgctcttca accaggcgca tcaggccagc ggcgcccaac cgcgcgctct ggccaatagc
     1861 gtgctgctct atgccaaaaa tatagaccgg ctgcaggaac tgggaccgct tgccgcgcag
     1921 atcgtcaaca agcatgtggc gctgcaagtg cagcctgagc attaccccat cgtcggcgcc
     1981 tgcctgttgc gggcgatccg cgaggtgctg gggccggata tcgccaccga tgcggtgatc
     2041 gatgcctggg gtgctgccta tcagcaattg gctgatctgc tgattggcgc ggaaaaaggc
     2101 gtgtacgacg cgctcgccgc ggcgccaggc ggctggcgtg gcgcgcgtgc cttccgtgtt
     2161 gcccgcaagg tggaggaaag tgcggaaatc acctccttcc atttggcgcc ggtggatgga
     2221 caggcggtgg ttgattacaa acctggtcag tatcttgggc tgcgccttgt catcgatggg
     2281 caggaagtgc gccgcaatta ttcactctcg gcagcagcca atggccgttt ctaccgcatc
     2341 agcgtgaagc gcgagcgcgg cgggctggtg tccaatttcc tgcacgacaa ggtcgcggaa
     2401 ggcgatgtgc tcgatgtgtt tccgccggcc ggtgaattcg tgctccgcga gggcacggcg
     2461 cctttggtgt tgatcagcgg cggggttggc atcaccccga cccttgccat ggccgaggcg
     2521 gcgctggcgg aaggcggccg cgatgtgacc ttcctgcatt atgcccgcaa caaggaggca
     2581 catgggttcg ccgagacgct ggcgggctgg gcgtcacgct atgagcggtt ccggcacttc
     2641 acgatttatg aacagggcga agcaggagag gcgcacgcct ttggccgccc ggtgcttgag
     2701 catctgcaga actggctgcc agcgaagccc gattgcgatg tgtatttcct gggacccaag
     2761 ccgttcatgg ctctcatgaa gacgcttctg gccaaattcg gcctggcgga tgaacgttgc
     2821 cgctacgagt tttttggccc cgcggag
//
